Citrus Sinensis ID: 018408

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350------
Protein Sequence
MRVATVLHHPVRPVPSYRSTLFTPSPAKMKTLRFSFSHRSTKFKVLAAKKQLPELRSRKQKQDGENLLSRDQKAEEGFDLGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGDGALASLLVGVTNFAGLRSEKYCGYV
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHcccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccHHHHHccccccEEEEEHHHHHHHHHHHHHHccccEEEEcccc
Secondary Structure Prediction (SSPRO)
cEEEEEccccccccccccHHcccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEHHHHHHHHcccccHcccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccHHEEEEHHHEHHHHHHHHHcHcHEEHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccEEEEEccc
Coil and Loop (DISEMBL)
mrvatvlhhpvrpvpsyrstlftpspakmktlrfsfshrsTKFKVLAAKKQlpelrsrkqkqdgenllsrdqkaeegfdlgwlpafpHVLIASMSNFLFGYHIGVMNGPIVSIAKelgfegnpileGLVVSIFIAGAFvgsissgsladklgcrrtfqiDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYisevaptkyrgslgtlcqvgTCLGIITslflgipaeddphwWRTMLYIASLPGFILALGMQftvesprwlckggmlnDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSElleephsrvafiGDGALASLLVGVTNfaglrsekycgyv
Flexible Loop (DISEMBL)
mrvatvlhhpvrpvpsyrstlftpspaKMKTLRFSFSHRSTKFKVLaakkqlpelrsrkqkqdgenllSRDQKAEEGFDLGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGDGALASLLVGVTNfaglrsekycgyv
Low Complexity Region (SEG)
MRVATVLHHPVRPVPSYRSTLFTPSPAKMKTLRFSFSHRSTKFKVLAAKKQLPELRSRKQKQDGENLLSRDQKAEEGFDLGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGDGALASLLVGVTNFAGLRSEKYCGYV
Disordered region (IsUnstruct)
****************************************************************************GFDLGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGDGALASLLVGVTNFAGLRSEKYCG**
Disordered Region (DISOPRED)
***********************************************************************************PAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAI*******************ELLEEPHSRVAFIGDGALASLLVGVTNFAGLRSEKYCGYV
Disordered Region (DISEMBL)
MRVATVLHHPVRPVPSYRSTLFTPSPAKMKTLRFSFSHRSTKFKVLAAKKQLPELR************SRDQKAEEGFDLGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGDGALASLLVGVTNFAGLRSEKYCGYV
Disordered Region (DISPRO)
MRVATVLHHPVRPVPSYRS*LF*********************************************************LGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGDGALASLLVGVTNFAGLRSEKYCGYV
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRVATVLHHPVRPVPSYRSTLFTPSPAKMKTLRFSFSHRSTKFKVLAAKKQLPELRSRKQKQDGENLLSRDQKAEEGFDLGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGDGALASLLVGVTNFAGLRSEKYCGYV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	356	2.2.26 [Sep-21-2011]
Q0WVE9	524	Probable plastidic glucos	yes	no	0.932	0.633	0.627	1e-123
Q9FYG3	493	Probable plastidic glucos	no	no	0.803	0.580	0.426	3e-61
Q2V4B9	495	Probable plastidic glucos	no	no	0.780	0.561	0.441	4e-60
Q56ZZ7	546	Plastidic glucose transpo	no	no	0.685	0.446	0.416	5e-56
C0SPB2	457	Putative metabolite trans	yes	no	0.665	0.518	0.342	1e-29
O34718	473	Major myo-inositol transp	no	no	0.716	0.539	0.303	3e-27
P54723	482	Putative metabolite trans	no	no	0.719	0.531	0.306	7e-27
P46333	461	Probable metabolite trans	no	no	0.522	0.403	0.353	2e-26
Q9SD00	729	Monosaccharide-sensing pr	no	no	0.651	0.318	0.322	1e-25
P94493	471	Putative metabolite trans	no	no	0.741	0.560	0.295	1e-24

>sp|Q0WVE9|PLST1_ARATH Probable plastidic glucose transporter 1 OS=Arabidopsis thaliana GN=At1g05030 PE=2 SV=2

 Score =  442 bits (1138), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 234/373 (62%), Positives = 267/373 (71%), Gaps = 41/373 (10%)

Query: 19  STLFTPSPAKMKTLRFSFSHRSTKFK----------VLAAKKQLPELRSRKQKQDGENLL 68
           +T+    P  M  L FS+  R    +              KK++  L ++K   D E  +
Sbjct: 5   NTVLLYRPNSMNRLTFSYPTRLAHSRKASSFSRFFRSSKRKKRVTTLSTKKPDDDHE--I 62

Query: 69  SRDQKAEEGFDLGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGL 128
           S     +   DLGWL AFPHV +ASM+NFLFGYHIGVMNGPIVSIA+ELGFEGN ILEGL
Sbjct: 63  SPVPPEKFSADLGWLSAFPHVSVASMANFLFGYHIGVMNGPIVSIARELGFEGNSILEGL 122

Query: 129 VVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVG 188
           VVSIFIAGAF+GSI +G L DK G RRTFQI TIPLILGA++SAQAHSLDE+L GRFLVG
Sbjct: 123 VVSIFIAGAFIGSIVAGPLVDKFGYRRTFQIFTIPLILGALVSAQAHSLDEILCGRFLVG 182

Query: 189 LGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLY 248
           LGIGVNTVLVPIYISEVAPTKYRGSLGTLCQ+GTCLGII SL LGIPAEDDPHWWRTMLY
Sbjct: 183 LGIGVNTVLVPIYISEVAPTKYRGSLGTLCQIGTCLGIIFSLLLGIPAEDDPHWWRTMLY 242

Query: 249 IASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDG 308
           +AS+PGF+LALGMQF VESPRWLCK G L+DAK VI N+WG SE+ KA+E+FQ V+K  G
Sbjct: 243 VASMPGFLLALGMQFAVESPRWLCKVGRLDDAKVVIRNIWGGSEVEKAVEDFQSVMKNSG 302

Query: 309 SDLDSQWSELLEEPHSRVAFIG-----------------------------DGALASLLV 339
           S+L+S+W ELL++PHSRVAFIG                              GA ASL V
Sbjct: 303 SNLNSRWLELLDKPHSRVAFIGGSLFVLQQFAGINGVLYFSSLTFQNVGITSGAQASLYV 362

Query: 340 GVTNFAGLRSEKY 352
           GVTNFAG     Y
Sbjct: 363 GVTNFAGALCASY 375

May be involved in the efflux of glucose towards the cytosol.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FYG3|PLST2_ARATH Probable plastidic glucose transporter 2 OS=Arabidopsis thaliana GN=At1g67300 PE=2 SV=1

 Score =  236 bits (601), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 125/293 (42%), Positives = 183/293 (62%), Gaps = 7/293 (2%)

Query: 62  QDGENLLSRDQKAE-EGFDLGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFE 120
           +D   LL  D   E E  +  W  + PHVL+A++S+FLFGYH+GV+N P+ SI+ +LGF 
Sbjct: 27  EDSSGLLENDVDNEMETTNPSWKCSLPHVLVATISSFLFGYHLGVVNEPLESISSDLGFS 86

Query: 121 GNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEM 180
           G+ + EGLVVS+ + GAF+GS+ SG +AD  G RR FQI  +P+ILGA +S  ++SL  M
Sbjct: 87  GDTLAEGLVVSVCLGGAFLGSLFSGGVADGFGRRRAFQICALPMILGAFVSGVSNSLAVM 146

Query: 181 LWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP 240
           L GRFLVG G+G+   +  +Y++EV+P   RG+ G+  Q+ TCLG++ +LF+GIP  +  
Sbjct: 147 LLGRFLVGTGMGLGPPVAALYVTEVSPAFVRGTYGSFIQIATCLGLMAALFIGIPVHNIT 206

Query: 241 HWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEE- 299
            WWR   +++++P  +LALGM    ESP+WL K G + +A+A    L G S +  A+ E 
Sbjct: 207 GWWRVCFWLSTIPAALLALGMFLCAESPQWLFKQGKIAEAEAEFERLLGGSHVKTAMAEL 266

Query: 300 FQLVIKKDGSDLDSQWSELLEEPHSRVAFIGDGALASLLVGVTNFAGLRSEKY 352
           ++L + K         SELL   HSRV FIG     S L  +   +G+ +  Y
Sbjct: 267 YKLDLDKTDEPDVVSLSELLYGRHSRVVFIG-----STLFALQQLSGINAVFY 314

May be involved in the efflux of glucose towards the cytosol.

Arabidopsis thaliana (taxid: 3702)

>sp|Q2V4B9|PLST3_ARATH Probable plastidic glucose transporter 3 OS=Arabidopsis thaliana GN=At1g79820 PE=2 SV=2

 Score =  232 bits (591), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 129/292 (44%), Positives = 181/292 (61%), Gaps = 14/292 (4%)

Query: 56  RSRKQKQDGENLLSRDQKAEE--------GFDLG---WLPAFPHVLIASMSNFLFGYHIG 104
           R   ++   +  LS   KAE         G D G   W  + PHVL+AS+++ LFGYH+G
Sbjct: 14  RHIDKRVPSKEFLSALDKAETAVRLPTGTGKDCGNPSWKRSLPHVLVASLTSLLFGYHLG 73

Query: 105 VMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL 164
           V+N  + SI+ +LGF GN I EGLVVS  + GAF+GS+ SG +AD +G RR FQ+  +P+
Sbjct: 74  VVNETLESISIDLGFSGNTIAEGLVVSTCLGGAFIGSLFSGLVADGVGRRRAFQLSALPM 133

Query: 165 ILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCL 224
           I+GA +SA   SL  ML GRFLVG+G+G+   +  +Y++EV+P   RG+ G+  Q+ TC+
Sbjct: 134 IVGASVSASTESLMGMLLGRFLVGIGMGIGPSVTALYVTEVSPAYVRGTYGSSTQIATCI 193

Query: 225 GIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVI 284
           G++ SLF GIPA+D+  WWR   +I+++P  +LA+ M+  VESP+WL K G   +A+AV 
Sbjct: 194 GLLGSLFAGIPAKDNLGWWRICFWISTVPAAMLAVFMELCVESPQWLFKRGRAAEAEAVF 253

Query: 285 ANLWGESEINKAIEEFQLVIKKDGSDLDS-QWSELLEEPHSRVAFIGDGALA 335
             L G S +  A+ E  LV    G D DS + SELL     RV FIG    A
Sbjct: 254 EKLLGGSYVKAAMAE--LVKSDRGDDADSAKLSELLFGRSFRVVFIGSTLFA 303

May be involved in the efflux of glucose towards the cytosol.

Arabidopsis thaliana (taxid: 3702)

>sp|Q56ZZ7|PLST4_ARATH Plastidic glucose transporter 4 OS=Arabidopsis thaliana GN=At5g16150 PE=1 SV=2

 Score =  218 bits (556), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 102/245 (41%), Positives = 162/245 (66%), Gaps = 1/245 (0%)

Query: 86  FPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSG 145
            P V +A +   LFGYH+GV+NG +  +AK+LG   N +L+G +VS  +AGA VGS + G
Sbjct: 106 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGG 165

Query: 146 SLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEV 205
           +LADK G  RTFQ+D IPL +GA + A A S+  M+ GR L G+GIG+++ +VP+YISE+
Sbjct: 166 ALADKFGRTRTFQLDAIPLAIGAFLCATAQSVQTMIVGRLLAGIGIGISSAIVPLYISEI 225

Query: 206 APTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTV 265
           +PT+ RG+LG++ Q+  C+GI+ +L  G+P   +P WWRTM  +A +P  +LA+GM F+ 
Sbjct: 226 SPTEIRGALGSVNQLFICIGILAALIAGLPLAANPLWWRTMFGVAVIPSVLLAIGMAFSP 285

Query: 266 ESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSR 325
           ESPRWL + G +++A+  I  L+G+  + + + +      +  S+ ++ W +L    + +
Sbjct: 286 ESPRWLVQQGKVSEAEKAIKTLYGKERVVELVRDLS-ASGQGSSEPEAGWFDLFSSRYWK 344

Query: 326 VAFIG 330
           V  +G
Sbjct: 345 VVSVG 349

May be involved in the efflux of glucose towards the cytosol.

Arabidopsis thaliana (taxid: 3702)

>sp|C0SPB2|YWTG_BACSU Putative metabolite transport protein YwtG OS=Bacillus subtilis (strain 168) GN=ywtG PE=3 SV=1

 Score =  130 bits (328), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 84/245 (34%), Positives = 133/245 (54%), Gaps = 8/245 (3%)

Query: 93  SMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLG 152
           ++   L+GY  GV++G I+ + KELG   N   EGLVVS  + GA +GS ++G L D+ G
Sbjct: 14  ALGGALYGYDTGVISGAILFMKKELGL--NAFTEGLVVSSLLVGAILGSGAAGKLTDRFG 71

Query: 153 CRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRG 212
            ++      +   +G +  A A +   M+  R ++GL +G +T +VP+Y+SE+AP   RG
Sbjct: 72  RKKAIMAAALLFCIGGLGVALAPNTGVMVLFRIILGLAVGTSTTIVPLYLSELAPKHKRG 131

Query: 213 SLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLC 272
           +L +L Q+   +GI+ S  +      D   WR ML +A++P  +L +G+ F  ESPRWL 
Sbjct: 132 ALSSLNQLMITVGILLSYIVNYIFA-DAEAWRWMLGLAAVPSLLLLIGILFMPESPRWLF 190

Query: 273 KGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGDG 332
             G  + AK ++  L G  +I++ I + +   K+D   L       L +P  R A I   
Sbjct: 191 TNGEESKAKKILEKLRGTKDIDQEIHDIKEAEKQDEGGLKE-----LFDPWVRPALIAGL 245

Query: 333 ALASL 337
            LA L
Sbjct: 246 GLAFL 250

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|O34718|IOLT_BACSU Major myo-inositol transporter IolT OS=Bacillus subtilis (strain 168) GN=iolT PE=2 SV=1

 Score =  123 bits (308), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 79/260 (30%), Positives = 128/260 (49%), Gaps = 5/260 (1%)

Query: 89  VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLA 148
           +L+++    LFGY  GV+NG +  + +      N   EGLV S  + GA +G++  G ++
Sbjct: 15  ILVSTFGGLLFGYDTGVLNGALPYMGEPDQLNLNAFTEGLVTSSLLFGAALGAVFGGRMS 74

Query: 149 DKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPT 208
           D  G R+      +   +  I    A ++  M+  RF++G+ +G  +V VP Y++E++P 
Sbjct: 75  DFNGRRKNILFLAVIFFISTIGCTFAPNVTVMIISRFVLGIAVGGASVTVPAYLAEMSPV 134

Query: 209 KYRGSLGTLCQV----GTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFT 264
           + RG + T  ++    G  L  + +  LG    D+ H WR ML IASLP   L  GM   
Sbjct: 135 ESRGRMVTQNELMIVSGQLLAFVFNAILGTTMGDNSHVWRFMLVIASLPALFLFFGMIRM 194

Query: 265 VESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHS 324
            ESPRWL   G   DA  V+  +  E      ++E +   KK+     + + +L      
Sbjct: 195 PESPRWLVSKGRKEDALRVLKKIRDEKRAAAELQEIEFAFKKEDQLEKATFKDLSVPWVR 254

Query: 325 RVAFIGDG-ALASLLVGVTN 343
           R+ FIG G A+   + GV +
Sbjct: 255 RIVFIGLGIAIVQQITGVNS 274

Major myo-inositol uptake transporter.

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|P54723|YFIG_BACSU Putative metabolite transport protein YfiG OS=Bacillus subtilis (strain 168) GN=yfiG PE=3 SV=1

 Score =  121 bits (304), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 83/271 (30%), Positives = 136/271 (50%), Gaps = 15/271 (5%)

Query: 90  LIASMSNFLFGYHIGVMNG--PIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSL 147
           L+++    LFGY  GV+NG  P ++ A +L     P+ EGLV S  + GA  G++  G L
Sbjct: 26  LVSTFGGLLFGYDTGVINGALPFMATAGQLNL--TPVTEGLVASSLLLGAAFGAMFGGRL 83

Query: 148 ADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAP 207
           +D+ G R+T     +  I   +    + +   M+  RFL+GL +G  +V VP +++E++P
Sbjct: 84  SDRHGRRKTILYLALLFIAATLGCTFSPNASVMIAFRFLLGLAVGCASVTVPTFLAEISP 143

Query: 208 TKYRGSLGT----LCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQF 263
            + RG + T    +  +G  L    +  +G    +  + WR ML IA+LP  +L  GM  
Sbjct: 144 AERRGRIVTQNELMIVIGQLLAYTFNAIIGSTMGESANVWRYMLVIATLPAVVLWFGMLI 203

Query: 264 TVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPH 323
             ESPRWL   G + DA  V+  +  +S+  + I+E +  I  +G+   + + +  E   
Sbjct: 204 VPESPRWLAAKGRMGDALRVLRQIREDSQAQQEIKEIKHAI--EGTAKKAGFHDFQEPWI 261

Query: 324 SRVAFIGDGALASLLVGVTNFAGLRSEKYCG 354
            R+ FIG G     +  V    G+ S  Y G
Sbjct: 262 RRILFIGIG-----IAIVQQITGVNSIMYYG 287

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|P46333|CSBC_BACSU Probable metabolite transport protein CsbC OS=Bacillus subtilis (strain 168) GN=csbC PE=1 SV=3

 Score =  120 bits (300), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/195 (35%), Positives = 118/195 (60%), Gaps = 9/195 (4%)

Query: 93  SMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLG 152
           ++   L+GY  GV++G ++ I  ++      + EGLVVS+ + GA  GS  SG+ +D+ G
Sbjct: 15  ALGGLLYGYDTGVISGALLFINNDIPL--TTLTEGLVVSMLLLGAIFGSALSGTCSDRWG 72

Query: 153 CRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRG 212
            R+   + +I  I+GA+  A + ++  ++  R ++GL +G +T LVP+Y+SE+APTK RG
Sbjct: 73  RRKVVFVLSIIFIIGALACAFSQTIGMLIASRVILGLAVGGSTALVPVYLSEMAPTKIRG 132

Query: 213 SLGTLCQVGTCLGIITSL---FLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPR 269
           +LGT+  +    GI+ +    +L  P E     WR M+ +A++P  +L +G+ F  ESPR
Sbjct: 133 TLGTMNNLMIVTGILLAYIVNYLFTPFEA----WRWMVGLAAVPAVLLLIGIAFMPESPR 188

Query: 270 WLCKGGMLNDAKAVI 284
           WL K G   +A+ ++
Sbjct: 189 WLVKRGSEEEARRIM 203

Could serve either a nutritional or an osmotic protection function.

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|Q9SD00|MSSP3_ARATH Monosaccharide-sensing protein 3 OS=Arabidopsis thaliana GN=MSSP3 PE=2 SV=1

 Score =  117 bits (293), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/239 (32%), Positives = 126/239 (52%), Gaps = 7/239 (2%)

Query: 90  LIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLAD 149
           L A++ N L G+    + G ++ I KE   E  P +EGL+V++ + GA + +  SG ++D
Sbjct: 9   LAAAIGNMLQGWDNATIAGAVIYIKKEFHLEKEPKIEGLIVAMSLIGATLITTFSGPVSD 68

Query: 150 KLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTK 209
           K+G R    + ++   L +I+   + ++  +L+ R L G GIG+   LVPIYISE AP++
Sbjct: 69  KVGRRSMLILSSVLYFLSSIVMFWSPNVYVLLFARLLDGFGIGLAVTLVPIYISETAPSE 128

Query: 210 YRGSLGTLCQVGTCLGIITS--LFLGIPAEDDPHWWRTMLYIASLPGF-ILALGMQFTVE 266
            RG L T  Q     G+  S  L  G+  ++ P  WR ML + S+P      L   F  E
Sbjct: 129 IRGLLNTFPQFCGSGGMFLSYCLVFGMSLQESPS-WRLMLGVLSIPSIAYFVLAAFFLPE 187

Query: 267 SPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSR 325
           SPRWL   G +++A+ V+  L G  +++    E  L+++  G   D+   E +  P + 
Sbjct: 188 SPRWLVSKGRMDEARQVLQRLRGREDVSG---ELALLVEGLGVGKDTSIEEYVIGPDNE 243

Arabidopsis thaliana (taxid: 3702)

>sp|P94493|YNCC_BACSU Putative metabolite transport protein YncC OS=Bacillus subtilis (strain 168) GN=yncC PE=3 SV=2

 Score =  114 bits (285), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/271 (29%), Positives = 136/271 (50%), Gaps = 7/271 (2%)

Query: 92  ASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKL 151
           A+    LFGY  GV+NG +  +A+    +  P+ EGLV SI + GA  G++  G LAD+ 
Sbjct: 18  ATFGGLLFGYDTGVINGALPFMARPDQLDLTPVTEGLVTSILLLGAAFGALLCGRLADRY 77

Query: 152 GCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYR 211
           G R+     +    L ++ +A A ++  M   RFL+GL +G  + +VP +++E+AP + R
Sbjct: 78  GRRKMILNLSFLFFLASLGTALAPNVFIMAVFRFLLGLAVGGASAMVPAFLAEMAPHEKR 137

Query: 212 GSLGTLCQV----GTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVES 267
           G + T  ++    G  L  + +  LG+   +  H WR ML I ++P  +L   M    ES
Sbjct: 138 GRMVTQNELMIVGGQFLAYVFNAILGVTMANTGHVWRYMLVICAVPAIMLFASMLKVPES 197

Query: 268 PRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVA 327
           PRWL   G  ++A  V+  +  +        E Q  ++KD +   +   +       R+ 
Sbjct: 198 PRWLISKGKNSEALRVLKQIREDKRAEAECREIQEAVEKDTALEKASLKDFSTPWLRRLL 257

Query: 328 FIGDG-ALASLLVGVTN--FAGLRSEKYCGY 355
           +IG G A+ + + GV +  + G +  K  G+
Sbjct: 258 WIGIGVAIVNQITGVNSIMYYGTQILKESGF 288

Bacillus subtilis (strain 168) (taxid: 224308)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	356
297739205	537	unnamed protein product [Vitis vinifera]	0.983	0.651	0.677	1e-144
225447125	546	PREDICTED: probable plastidic glucose tr	0.988	0.644	0.665	1e-143
224136954	518	predicted protein [Populus trichocarpa]	0.943	0.648	0.644	1e-131
449463102	540	PREDICTED: probable plastidic glucose tr	0.977	0.644	0.631	1e-128
449505434	540	PREDICTED: probable plastidic glucose tr	0.977	0.644	0.628	1e-128
357462225	556	hypothetical protein MTR_3g080240 [Medic	0.929	0.595	0.643	1e-127
297848760	521	hypothetical protein ARALYDRAFT_470494 [	0.935	0.639	0.648	1e-126
356547853	515	PREDICTED: probable plastidic glucose tr	0.837	0.578	0.665	1e-122
42561706	524	putative plastidic glucose transporter 1	0.932	0.633	0.627	1e-122
310877902	439	putative monosaccharide transporter [Vit	0.727	0.589	0.753	1e-121

>gi|297739205|emb|CBI28856.3| unnamed protein product [Vitis vinifera]

 Score =  518 bits (1335), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 263/388 (67%), Positives = 294/388 (75%), Gaps = 38/388 (9%)

Query: 1   MRVATVLHHPVRPVPSYRSTLFTPS-------PAKMKTLRFSFSHRSTKFKVLAAKKQLP 53
           M  AT++H P+  VP   S    P         +K K  RF F  RS K +V AAK+QLP
Sbjct: 1   MWAATLVHQPLYVVPKILSPQSNPKLFAYPLIKSKPKCRRFGFRSRSKKLEVSAAKEQLP 60

Query: 54  ELRSRKQKQDGENLLSRDQKAEEGFDLGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSI 113
           EL +  QK   + + + ++  +EGFDLGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVS+
Sbjct: 61  ELHA--QKPGAKEVATEEEDGDEGFDLGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSV 118

Query: 114 AKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQ 173
           A+ELGFEGN ILEGLVVSIFI GAF+GS+SSG L DK GCRRT QIDTIPLILGA+ISAQ
Sbjct: 119 ARELGFEGNSILEGLVVSIFIGGAFIGSLSSGLLVDKFGCRRTLQIDTIPLILGALISAQ 178

Query: 174 AHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLG 233
           AHSLDE+LWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQ+GTCLGII SLFLG
Sbjct: 179 AHSLDEILWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQIGTCLGIIVSLFLG 238

Query: 234 IPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEI 293
           IP+EDDPHWWRTMLYIA++PGFI++LGMQF VESPRWLCK G LN+AK +I +LWG SE+
Sbjct: 239 IPSEDDPHWWRTMLYIATIPGFIISLGMQFAVESPRWLCKAGRLNEAKTIIRSLWGVSEV 298

Query: 294 NKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIG----------------------- 330
           ++AIEEFQ VIK DGSDLDS W ELLEEPHSRVAFIG                       
Sbjct: 299 DRAIEEFQAVIKNDGSDLDSNWLELLEEPHSRVAFIGGTLFFLQQFAGINGVLYFSSLTF 358

Query: 331 ------DGALASLLVGVTNFAGLRSEKY 352
                  GALASL VGVTNFAG     Y
Sbjct: 359 QDVGITSGALASLFVGVTNFAGALCALY 386

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447125|ref|XP_002271129.1| PREDICTED: probable plastidic glucose transporter 1-like [Vitis vinifera]

 Score =  515 bits (1327), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 263/395 (66%), Positives = 295/395 (74%), Gaps = 43/395 (10%)

Query: 1   MRVATVLHHPVRPVPSYRSTLFTPS-------PAKMKTLRFSFSHRSTKFKVLAAKKQLP 53
           M  AT++H P+  VP   S    P         +K K  RF F  RS K +V AAK+QLP
Sbjct: 1   MWAATLVHQPLYVVPKILSPQSNPKLFAYPLIKSKPKCRRFGFRSRSKKLEVSAAKEQLP 60

Query: 54  ELRSRKQKQDGE-------NLLSRDQKAEEGFDLGWLPAFPHVLIASMSNFLFGYHIGVM 106
           EL ++K  +  E        + + ++  +EGFDLGWLPAFPHVLIASMSNFLFGYHIGVM
Sbjct: 61  ELHAQKPVEIRELGVAGAKEVATEEEDGDEGFDLGWLPAFPHVLIASMSNFLFGYHIGVM 120

Query: 107 NGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLIL 166
           NGPIVS+A+ELGFEGN ILEGLVVSIFI GAF+GS+SSG L DK GCRRT QIDTIPLIL
Sbjct: 121 NGPIVSVARELGFEGNSILEGLVVSIFIGGAFIGSLSSGLLVDKFGCRRTLQIDTIPLIL 180

Query: 167 GAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGI 226
           GA+ISAQAHSLDE+LWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQ+GTCLGI
Sbjct: 181 GALISAQAHSLDEILWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQIGTCLGI 240

Query: 227 ITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIAN 286
           I SLFLGIP+EDDPHWWRTMLYIA++PGFI++LGMQF VESPRWLCK G LN+AK +I +
Sbjct: 241 IVSLFLGIPSEDDPHWWRTMLYIATIPGFIISLGMQFAVESPRWLCKAGRLNEAKTIIRS 300

Query: 287 LWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIG---------------- 330
           LWG SE+++AIEEFQ VIK DGSDLDS W ELLEEPHSRVAFIG                
Sbjct: 301 LWGVSEVDRAIEEFQAVIKNDGSDLDSNWLELLEEPHSRVAFIGGTLFFLQQFAGINGVL 360

Query: 331 -------------DGALASLLVGVTNFAGLRSEKY 352
                         GALASL VGVTNFAG     Y
Sbjct: 361 YFSSLTFQDVGITSGALASLFVGVTNFAGALCALY 395

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136954|ref|XP_002326986.1| predicted protein [Populus trichocarpa] gi|222835301|gb|EEE73736.1| predicted protein [Populus trichocarpa]

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 247/383 (64%), Positives = 279/383 (72%), Gaps = 47/383 (12%)

Query: 1   MRVATVLHHPVRPVPSYRSTLFTPSPAKMKTLRFSFSHRSTKFKVLAAKKQ--LPELRSR 58
           M VATVL  PV PV S  ++   P   K  +  F FS+R    +V A K+Q  LPE ++ 
Sbjct: 1   MWVATVLPKPVPPVLSVLTSSRNP---KQSSFHFRFSYRPLNLEVSATKQQQQLPEPKA- 56

Query: 59  KQKQDGENLLSRDQKAEEGFDLGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELG 118
                       D+K     DLGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVS+AKELG
Sbjct: 57  ------------DKKNPSSSDLGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSVAKELG 104

Query: 119 FEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLD 178
           FEGN  LEGLVVSIFIAGAF+GS++SGSL DKLGCRRTFQ+DTIPLILGA++SAQAHSLD
Sbjct: 105 FEGNSTLEGLVVSIFIAGAFLGSVASGSLVDKLGCRRTFQLDTIPLILGALVSAQAHSLD 164

Query: 179 EMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAED 238
           E+LWGRFLVGLGIGV+TVLVPIYISEVAPTKYRGSLGTLCQ+GTCLGII SLFL IP+E 
Sbjct: 165 EILWGRFLVGLGIGVHTVLVPIYISEVAPTKYRGSLGTLCQIGTCLGIIASLFLDIPSET 224

Query: 239 DPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIE 298
           DPHWWRT+LY+AS PGFILALGMQF VESPRWLCK G L+DAK VI N+WG SE+  AI+
Sbjct: 225 DPHWWRTILYLASAPGFILALGMQFAVESPRWLCKVGRLDDAKTVIRNIWGSSEVETAIQ 284

Query: 299 EFQLVIKKDGSDLDSQWSELLEEPHSRVAFIG---------------------------- 330
           +FQ VIK +G ++ S W ELLEEPHSRVAFIG                            
Sbjct: 285 DFQSVIKNNGVNVGSGWLELLEEPHSRVAFIGGALFVLQQFAGINGVLYFSSLTFKDVGI 344

Query: 331 -DGALASLLVGVTNFAGLRSEKY 352
              +LASL VG+ NFAG     Y
Sbjct: 345 TSSSLASLFVGLANFAGALCAVY 367

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463102|ref|XP_004149273.1| PREDICTED: probable plastidic glucose transporter 1-like [Cucumis sativus]

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 248/393 (63%), Positives = 283/393 (72%), Gaps = 45/393 (11%)

Query: 1   MRVATVLHHPVRPVPSYRSTLFTPSPAKMKT-------LR--FSFSHRST-KFKVLAAKK 50
           MRV  +LH PV P P+         P            LR  F +  RS  KF+VLA  K
Sbjct: 1   MRVIPLLHFPVPPAPAITIARRHSIPPSYDLSGHGSFPLRSGFRYMFRSVRKFEVLATNK 60

Query: 51  QLPELRSRKQKQDGENLLSRDQKAEEG--FDLGWLPAFPHVLIASMSNFLFGYHIGVMNG 108
           QLPEL+  K + + E +L R   AE G  FDLGWLPAFPHVL+ASMSNFLFGYHIGVMNG
Sbjct: 61  QLPELKDGKSESE-EGILLR---AEVGGSFDLGWLPAFPHVLVASMSNFLFGYHIGVMNG 116

Query: 109 PIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA 168
           PI+SIA+ELGFEGN ILEGLVVSIFI GAF+GSISSGSL DKLG RRTFQ+ TIPLILGA
Sbjct: 117 PIISIARELGFEGNSILEGLVVSIFIVGAFLGSISSGSLLDKLGFRRTFQLATIPLILGA 176

Query: 169 IISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIIT 228
           ++SAQA +LDE+LWGRFLVGLGIGVNTVLVPIYISEV PTKYRG+LG LCQ+GTCLGII 
Sbjct: 177 LLSAQALTLDEVLWGRFLVGLGIGVNTVLVPIYISEVVPTKYRGTLGGLCQIGTCLGIIA 236

Query: 229 SLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLW 288
           SLFLGIP E+DPHWWRTMLYIASLPGF +A GMQF VESPRWL K G L++ + VI NLW
Sbjct: 237 SLFLGIPYENDPHWWRTMLYIASLPGFFIAFGMQFAVESPRWLSKAGRLDETRVVIRNLW 296

Query: 289 GESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGDG---------------- 332
           GESE+ +A+EEFQ VI+ DGSDL+S WS LLEE + RVAFIG                  
Sbjct: 297 GESEVERAVEEFQSVIRNDGSDLNSGWSVLLEEQNFRVAFIGGALFFLQQFAGINGVLYF 356

Query: 333 -------------ALASLLVGVTNFAGLRSEKY 352
                        A+ASL++G+TNF+G     Y
Sbjct: 357 SSLTFEDVGITNVAVASLVIGITNFSGALCALY 389

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449505434|ref|XP_004162468.1| PREDICTED: probable plastidic glucose transporter 1-like [Cucumis sativus]

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 247/393 (62%), Positives = 285/393 (72%), Gaps = 45/393 (11%)

Query: 1   MRVATVLHHPVRPVPSYR-STLFTPSPAKMKTLRFSFSHRS---------TKFKVLAAKK 50
           MRV  +LH PV P P+   +   +  P+   +   SF  RS          KF+VLA  K
Sbjct: 1   MRVIPLLHFPVPPAPAITIARRHSIPPSYDLSGHGSFPLRSGFRYMFPSVRKFEVLATNK 60

Query: 51  QLPELRSRKQKQDGENLLSRDQKAEEG--FDLGWLPAFPHVLIASMSNFLFGYHIGVMNG 108
           QLPEL+  K + + E +L R   AE G  FDLGWLPAFPHVL+ASMSNFLFGYHIGVMNG
Sbjct: 61  QLPELKDGKSESE-EGILLR---AEVGGSFDLGWLPAFPHVLVASMSNFLFGYHIGVMNG 116

Query: 109 PIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA 168
           PI+SIA+ELGFEGN ILEGLVVSIFI GAF+GSISSGSL DKLG RRTFQ+ TIPLILGA
Sbjct: 117 PIISIARELGFEGNSILEGLVVSIFIVGAFLGSISSGSLLDKLGFRRTFQLATIPLILGA 176

Query: 169 IISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIIT 228
           ++SAQA +LDE+LWGRFLVGLGIGVNTVLVPIYISEV PTKYRG+LG LCQ+GTCLGII 
Sbjct: 177 LLSAQALTLDEVLWGRFLVGLGIGVNTVLVPIYISEVVPTKYRGTLGGLCQIGTCLGIIA 236

Query: 229 SLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLW 288
           SLFLGIP E+DPHWWRTMLYIASLPGF +A GMQF VESPRWL K G L++ + VI NLW
Sbjct: 237 SLFLGIPYENDPHWWRTMLYIASLPGFFIAFGMQFAVESPRWLSKAGRLDETRVVIRNLW 296

Query: 289 GESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGDG---------------- 332
           GESE+ +A+EEFQ VI+ DGSDL+S WS LLEE + RVAFIG                  
Sbjct: 297 GESEVERAVEEFQSVIRNDGSDLNSGWSVLLEEQNFRVAFIGGALFFLQQFAGINGVLYF 356

Query: 333 -------------ALASLLVGVTNFAGLRSEKY 352
                        A+ASL++G+TNF+G     Y
Sbjct: 357 SSLTFEDVGITNVAVASLVIGITNFSGALCALY 389

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357462225|ref|XP_003601394.1| hypothetical protein MTR_3g080240 [Medicago truncatula] gi|355490442|gb|AES71645.1| hypothetical protein MTR_3g080240 [Medicago truncatula]

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 236/367 (64%), Positives = 271/367 (73%), Gaps = 36/367 (9%)

Query: 22  FTPSPAKMKTLRFSF--SHRSTKFKVLAAKKQ-LPELRSRKQKQDGE----NLLSRDQKA 74
           F+    K+KT+ +S   S R +K +V A K Q   E ++     D E    + L  +   
Sbjct: 23  FSKPKIKIKTIPYSLNSSFRLSKLRVSATKDQNHSESQTSNNVSDDEVTEQHPLDENGGV 82

Query: 75  EEGFDLGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFI 134
             GFDLGWLP+FPHVLIAS+SNF FGYHIG+MNGPI+SIA+ELGFEGN  +EGLVVSIFI
Sbjct: 83  GGGFDLGWLPSFPHVLIASLSNFTFGYHIGIMNGPIISIARELGFEGNSFIEGLVVSIFI 142

Query: 135 AGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVN 194
           AGAF+GS+S+GSL DKLGCR TFQIDTIPLILGAIISA AHSLDE+L GRFLVGLGIGVN
Sbjct: 143 AGAFIGSLSTGSLVDKLGCRLTFQIDTIPLILGAIISANAHSLDEILGGRFLVGLGIGVN 202

Query: 195 TVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPG 254
            VLVPIYISEVAPTKYRGSLG+LCQ+GTCLGII SL LGIP+E+DPHWWRTMLYIAS+PG
Sbjct: 203 AVLVPIYISEVAPTKYRGSLGSLCQIGTCLGIIASLSLGIPSENDPHWWRTMLYIASVPG 262

Query: 255 FILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQ 314
           F++ LGMQF V+SPRWLCK G +NDAK V+  LWG SE+  AIEEFQ V K DGSDLDS+
Sbjct: 263 FVVGLGMQFAVDSPRWLCKAGRINDAKRVVWELWGASEVEGAIEEFQSVSKNDGSDLDSR 322

Query: 315 WSELLEEPHSRVAFIG-----------------------------DGALASLLVGVTNFA 345
           WSE+LE+PHSRVAFIG                               ALASL VG+TNFA
Sbjct: 323 WSEILEQPHSRVAFIGGALFVLQQFAGINAVLYFSSLTFQDVGIQSSALASLFVGLTNFA 382

Query: 346 GLRSEKY 352
           G     Y
Sbjct: 383 GALCALY 389

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297848760|ref|XP_002892261.1| hypothetical protein ARALYDRAFT_470494 [Arabidopsis lyrata subsp. lyrata] gi|297338103|gb|EFH68520.1| hypothetical protein ARALYDRAFT_470494 [Arabidopsis lyrata subsp. lyrata]

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 240/370 (64%), Positives = 273/370 (73%), Gaps = 37/370 (10%)

Query: 19  STLFTPSPAKMKTLRFSFSHRSTK------FKVLAAKKQLPELRSRKQKQDGENLLSRDQ 72
           +T+    P  +  L FS+  R T       F     K ++  L + K K D ++ LS D+
Sbjct: 5   NTVILHQPNSLTRLTFSYPTRLTHSRKVSPFSRFLRKNRVTALSTTK-KPDEDHELSPDE 63

Query: 73  KAEE-GFDLGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVS 131
           K E+   DLGWL AFPHV +ASM+NFLFGYHIGVMNGPIVSIA+ELGFEGN ILEGLVVS
Sbjct: 64  KLEKFSADLGWLSAFPHVSVASMANFLFGYHIGVMNGPIVSIARELGFEGNSILEGLVVS 123

Query: 132 IFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGI 191
           IFIAGAF+GSI SG L DK G RRTFQI TIPLILGA++SAQAHSLDE+L GRFLVGLGI
Sbjct: 124 IFIAGAFIGSIVSGPLVDKFGYRRTFQIVTIPLILGALVSAQAHSLDEILCGRFLVGLGI 183

Query: 192 GVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIAS 251
           GVNTVLVPIYISEVAPTKYRGSLGTLCQ+GTCLGII SL LGIPAEDDPHWWRTMLY+AS
Sbjct: 184 GVNTVLVPIYISEVAPTKYRGSLGTLCQIGTCLGIIFSLLLGIPAEDDPHWWRTMLYVAS 243

Query: 252 LPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDL 311
           +PGF+LALGMQF VESPRWLCK G L+DAK VI N+WG SEI KA+E+FQ V+K +GS+L
Sbjct: 244 MPGFLLALGMQFAVESPRWLCKVGQLDDAKVVIRNIWGGSEIEKAVEDFQSVMKNNGSNL 303

Query: 312 DSQWSELLEEPHSRVAFIG-----------------------------DGALASLLVGVT 342
           +S+W ELL++PHSRVAFIG                              GA ASL VGVT
Sbjct: 304 NSRWLELLDKPHSRVAFIGGTLFVLQQFAGINGVLYFSSITFQNVGITSGAQASLYVGVT 363

Query: 343 NFAGLRSEKY 352
           NFAG     Y
Sbjct: 364 NFAGALCASY 373

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356547853|ref|XP_003542319.1| PREDICTED: probable plastidic glucose transporter 1-like [Glycine max]

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 229/344 (66%), Positives = 256/344 (74%), Gaps = 46/344 (13%)

Query: 38  HRSTKFKVLAAKKQLPELRSRKQKQDGENLLSRDQKAEEGFDLGWLPAFPHVLIASMSNF 97
           H S K KV A K         K KQ      S  Q        GWLPAFPHVL+ASMSNF
Sbjct: 43  HLSNKLKVSALKSN-----ETKPKQ-----FSLCQN-------GWLPAFPHVLVASMSNF 85

Query: 98  LFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTF 157
           +FGYHIGVMNGPIVSIA+ELGFEGN  +EGLVVSIFIAGAF+GSISS SL D+LG R TF
Sbjct: 86  IFGYHIGVMNGPIVSIARELGFEGNSFIEGLVVSIFIAGAFIGSISSASLLDRLGSRLTF 145

Query: 158 QIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTL 217
           QI++IPLILGAIISAQAHSL+E++ GRFLVGLGIGVNTVLVPIYISEVAPTKYRG+LG+L
Sbjct: 146 QINSIPLILGAIISAQAHSLNEIIGGRFLVGLGIGVNTVLVPIYISEVAPTKYRGALGSL 205

Query: 218 CQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGML 277
           CQ+GTCLGIITSLFLGIP+E+DPHWWRTMLYIAS+PG ++ALGMQF V+SPRWLCK G +
Sbjct: 206 CQIGTCLGIITSLFLGIPSENDPHWWRTMLYIASIPGILVALGMQFAVDSPRWLCKAGRI 265

Query: 278 NDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIG------- 330
           NDAK V+  LWG SE++ AIEEFQ V K DGSDL S+WSE+LEEPHSRVAFIG       
Sbjct: 266 NDAKTVVRELWGASEVDSAIEEFQSVSKNDGSDLASRWSEILEEPHSRVAFIGGTLFVLQ 325

Query: 331 ----------------------DGALASLLVGVTNFAGLRSEKY 352
                                   ALASL VG+TNFAG     Y
Sbjct: 326 QFAGINGVLYFSSLTFQKVGVESSALASLFVGLTNFAGALCALY 369

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42561706|ref|NP_171996.2| putative plastidic glucose transporter 1 [Arabidopsis thaliana] gi|117940084|sp|Q0WVE9.2|PLST1_ARATH RecName: Full=Probable plastidic glucose transporter 1 gi|53828535|gb|AAU94377.1| At1g05030 [Arabidopsis thaliana] gi|55733727|gb|AAV59260.1| At1g05030 [Arabidopsis thaliana] gi|332189660|gb|AEE27781.1| putative plastidic glucose transporter 1 [Arabidopsis thaliana]

 Score =  442 bits (1138), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 234/373 (62%), Positives = 267/373 (71%), Gaps = 41/373 (10%)

Query: 19  STLFTPSPAKMKTLRFSFSHRSTKFK----------VLAAKKQLPELRSRKQKQDGENLL 68
           +T+    P  M  L FS+  R    +              KK++  L ++K   D E  +
Sbjct: 5   NTVLLYRPNSMNRLTFSYPTRLAHSRKASSFSRFFRSSKRKKRVTTLSTKKPDDDHE--I 62

Query: 69  SRDQKAEEGFDLGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGL 128
           S     +   DLGWL AFPHV +ASM+NFLFGYHIGVMNGPIVSIA+ELGFEGN ILEGL
Sbjct: 63  SPVPPEKFSADLGWLSAFPHVSVASMANFLFGYHIGVMNGPIVSIARELGFEGNSILEGL 122

Query: 129 VVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVG 188
           VVSIFIAGAF+GSI +G L DK G RRTFQI TIPLILGA++SAQAHSLDE+L GRFLVG
Sbjct: 123 VVSIFIAGAFIGSIVAGPLVDKFGYRRTFQIFTIPLILGALVSAQAHSLDEILCGRFLVG 182

Query: 189 LGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLY 248
           LGIGVNTVLVPIYISEVAPTKYRGSLGTLCQ+GTCLGII SL LGIPAEDDPHWWRTMLY
Sbjct: 183 LGIGVNTVLVPIYISEVAPTKYRGSLGTLCQIGTCLGIIFSLLLGIPAEDDPHWWRTMLY 242

Query: 249 IASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDG 308
           +AS+PGF+LALGMQF VESPRWLCK G L+DAK VI N+WG SE+ KA+E+FQ V+K  G
Sbjct: 243 VASMPGFLLALGMQFAVESPRWLCKVGRLDDAKVVIRNIWGGSEVEKAVEDFQSVMKNSG 302

Query: 309 SDLDSQWSELLEEPHSRVAFIG-----------------------------DGALASLLV 339
           S+L+S+W ELL++PHSRVAFIG                              GA ASL V
Sbjct: 303 SNLNSRWLELLDKPHSRVAFIGGSLFVLQQFAGINGVLYFSSLTFQNVGITSGAQASLYV 362

Query: 340 GVTNFAGLRSEKY 352
           GVTNFAG     Y
Sbjct: 363 GVTNFAGALCASY 375

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|310877902|gb|ADP37182.1| putative monosaccharide transporter [Vitis vinifera]

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 217/288 (75%), Positives = 235/288 (81%), Gaps = 29/288 (10%)

Query: 94  MSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGC 153
           MSNFLFGYHIGVMNGPIVS+A+ELGFEGN ILEGLVVSIFI GAF+GS+SSG L DK GC
Sbjct: 1   MSNFLFGYHIGVMNGPIVSVARELGFEGNSILEGLVVSIFIGGAFIGSLSSGLLVDKFGC 60

Query: 154 RRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGS 213
           RRT QIDTIPLILGA+ISAQAHSLDE+LWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGS
Sbjct: 61  RRTLQIDTIPLILGALISAQAHSLDEILWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGS 120

Query: 214 LGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCK 273
           LGTLCQ+GTCLGII SLFLGIP+EDDPHWWRTMLYIA++PGFI++LGMQF VESPRWLCK
Sbjct: 121 LGTLCQIGTCLGIIVSLFLGIPSEDDPHWWRTMLYIATIPGFIISLGMQFAVESPRWLCK 180

Query: 274 GGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIG--- 330
            G LN+AK +I +LWG SE+++AIEEFQ VIK DGSDLDS W ELLEEPHSRVAFIG   
Sbjct: 181 AGRLNEAKTIIRSLWGVSEVDRAIEEFQAVIKNDGSDLDSNWLELLEEPHSRVAFIGGTL 240

Query: 331 --------------------------DGALASLLVGVTNFAGLRSEKY 352
                                      GALASL VGVTNFAG     Y
Sbjct: 241 FFLQQFAGINGVLYFSSLTFQDVGITSGALASLFVGVTNFAGALCALY 288

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	356
TAIR|locus:2205548	524	AT1G05030 [Arabidopsis thalian	0.943	0.641	0.666	1.1e-118
TAIR|locus:2019554	494	AT1G67300 [Arabidopsis thalian	0.766	0.552	0.451	1e-59
TAIR|locus:2017899	495	SGB1 "SUPPRESSOR OF G PROTEIN	0.719	0.517	0.465	8.4e-58
TAIR|locus:2181422	546	PGLCT "plastidic GLC transloca	0.713	0.465	0.410	3.4e-54
TIGR_CMR|CBU_0347	463	CBU_0347 "d-xylose-proton symp	0.646	0.496	0.333	1.6e-29
ASPGD|ASPL0000049573	528	AN8912 [Emericella nidulans (t	0.727	0.490	0.316	9e-29
TAIR|locus:2009832	580	INT2 "inositol transporter 2"	0.662	0.406	0.344	3e-27
UNIPROTKB|P0AEP1	464	galP "galactose:H+ symporter"	0.648	0.497	0.327	5.3e-27
UNIPROTKB|E9PE47	357	SLC2A13 "Proton myo-inositol c	0.789	0.787	0.288	5.7e-27
ZFIN|ZDB-GENE-090812-1	546	slc2a13b "solute carrier famil	0.803	0.523	0.285	1.1e-26

TAIR|locus:2205548 AT1G05030 [Arabidopsis thaliana (taxid:3702)]

 Score = 1125 (401.1 bits), Expect = 1.1e-118, Sum P(2) = 1.1e-118
 Identities = 232/348 (66%), Positives = 266/348 (76%)

Query:     5 TVLHHPVRPVPSYRSTLFTPSPAKMKTLRFSFSHRSTKFKVLAAKKQLPELRSRKQKQDG 64
             TVL +  RP    R T   P+         SFS     F+    KK++  L ++K   D 
Sbjct:     6 TVLLY--RPNSMNRLTFSYPTRLAHSRKASSFSRF---FRSSKRKKRVTTLSTKKPDDDH 60

Query:    65 ENLLSRDQKAEEGFDLGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPI 124
             E  +S     +   DLGWL AFPHV +ASM+NFLFGYHIGVMNGPIVSIA+ELGFEGN I
Sbjct:    61 E--ISPVPPEKFSADLGWLSAFPHVSVASMANFLFGYHIGVMNGPIVSIARELGFEGNSI 118

Query:   125 LEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGR 184
             LEGLVVSIFIAGAF+GSI +G L DK G RRTFQI TIPLILGA++SAQAHSLDE+L GR
Sbjct:   119 LEGLVVSIFIAGAFIGSIVAGPLVDKFGYRRTFQIFTIPLILGALVSAQAHSLDEILCGR 178

Query:   185 FLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWR 244
             FLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQ+GTCLGII SL LGIPAEDDPHWWR
Sbjct:   179 FLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQIGTCLGIIFSLLLGIPAEDDPHWWR 238

Query:   245 TMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVI 304
             TMLY+AS+PGF+LALGMQF VESPRWLCK G L+DAK VI N+WG SE+ KA+E+FQ V+
Sbjct:   239 TMLYVASMPGFLLALGMQFAVESPRWLCKVGRLDDAKVVIRNIWGGSEVEKAVEDFQSVM 298

Query:   305 KKDGSDLDSQWSELLEEPHSRVAFIGDGALASLLVGVTNFAGLRSEKY 352
             K  GS+L+S+W ELL++PHSRVAFIG     SL V +  FAG+    Y
Sbjct:   299 KNSGSNLNSRWLELLDKPHSRVAFIG----GSLFV-LQQFAGINGVLY 341

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2019554 AT1G67300 [Arabidopsis thaliana (taxid:3702)]

 Score = 612 (220.5 bits), Expect = 1.0e-59, P = 1.0e-59
 Identities = 125/277 (45%), Positives = 180/277 (64%)

Query:    62 QDGENLLSRDQKAE-EGFDLGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFE 120
             +D   LL  D   E E  +  W  + PHVL+A++S+FLFGYH+GV+N P+ SI+ +LGF 
Sbjct:    27 EDSSGLLENDVDNEMETTNPSWKCSLPHVLVATISSFLFGYHLGVVNEPLESISSDLGFS 86

Query:   121 GNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEM 180
             G+ + EGLVVS+ + GAF+GS+ SG +AD  G RR FQI  +P+ILGA +S  ++SL  M
Sbjct:    87 GDTLAEGLVVSVCLGGAFLGSLFSGGVADGFGRRRAFQICALPMILGAFVSGVSNSLAVM 146

Query:   181 LWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP 240
             L GRFLVG G+G+   +  +Y++EV+P   RG+ G+  Q+ TCLG++ +LF+GIP  +  
Sbjct:   147 LLGRFLVGTGMGLGPPVAALYVTEVSPAFVRGTYGSFIQIATCLGLMAALFIGIPVHNIT 206

Query:   241 HWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEE- 299
              WWR   +++++P  +LALGM    ESP+WL K G + +A+A    L G S +  A+ E 
Sbjct:   207 GWWRVCFWLSTIPAALLALGMFLCAESPQWLFKQGKIAEAEAEFERLLGGSHVKTAMAEL 266

Query:   300 FQLVIKK-DGSDLDSQWSELLEEPHSRVAFIGDGALA 335
             ++L + K D  D+ S  SELL   HSRV FIG    A
Sbjct:   267 YKLDLDKTDEPDVVSL-SELLYGRHSRVVFIGSTLFA 302

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2017899 SGB1 "SUPPRESSOR OF G PROTEIN BETA1" [Arabidopsis thaliana (taxid:3702)]

 Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
 Identities = 123/264 (46%), Positives = 174/264 (65%)

Query:    77 GFDLG---WLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIF 133
             G D G   W  + PHVL+AS+++ LFGYH+GV+N  + SI+ +LGF GN I EGLVVS  
Sbjct:    43 GKDCGNPSWKRSLPHVLVASLTSLLFGYHLGVVNETLESISIDLGFSGNTIAEGLVVSTC 102

Query:   134 IAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGV 193
             + GAF+GS+ SG +AD +G RR FQ+  +P+I+GA +SA   SL  ML GRFLVG+G+G+
Sbjct:   103 LGGAFIGSLFSGLVADGVGRRRAFQLSALPMIVGASVSASTESLMGMLLGRFLVGIGMGI 162

Query:   194 NTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLP 253
                +  +Y++EV+P   RG+ G+  Q+ TC+G++ SLF GIPA+D+  WWR   +I+++P
Sbjct:   163 GPSVTALYVTEVSPAYVRGTYGSSTQIATCIGLLGSLFAGIPAKDNLGWWRICFWISTVP 222

Query:   254 GFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKD-GSDLD 312
               +LA+ M+  VESP+WL K G   +A+AV   L G S +  A+ E   ++K D G D D
Sbjct:   223 AAMLAVFMELCVESPQWLFKRGRAAEAEAVFEKLLGGSYVKAAMAE---LVKSDRGDDAD 279

Query:   313 S-QWSELLEEPHSRVAFIGDGALA 335
             S + SELL     RV FIG    A
Sbjct:   280 SAKLSELLFGRSFRVVFIGSTLFA 303

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2181422 PGLCT "plastidic GLC translocator" [Arabidopsis thaliana (taxid:3702)]

 Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
 Identities = 105/256 (41%), Positives = 166/256 (64%)

Query:    87 PHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGS 146
             P V +A +   LFGYH+GV+NG +  +AK+LG   N +L+G +VS  +AGA VGS + G+
Sbjct:   107 PFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGA 166

Query:   147 LADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVA 206
             LADK G  RTFQ+D IPL +GA + A A S+  M+ GR L G+GIG+++ +VP+YISE++
Sbjct:   167 LADKFGRTRTFQLDAIPLAIGAFLCATAQSVQTMIVGRLLAGIGIGISSAIVPLYISEIS 226

Query:   207 PTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVE 266
             PT+ RG+LG++ Q+  C+GI+ +L  G+P   +P WWRTM  +A +P  +LA+GM F+ E
Sbjct:   227 PTEIRGALGSVNQLFICIGILAALIAGLPLAANPLWWRTMFGVAVIPSVLLAIGMAFSPE 286

Query:   267 SPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRV 326
             SPRWL + G +++A+  I  L+G+  + + + +      +  S+ ++ W +L    + +V
Sbjct:   287 SPRWLVQQGKVSEAEKAIKTLYGKERVVELVRDLS-ASGQGSSEPEAGWFDLFSSRYWKV 345

Query:   327 AFIGDGA-LASLLVGV 341
               +G    L   L G+
Sbjct:   346 VSVGAALFLFQQLAGI 361

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

TIGR_CMR|CBU_0347 CBU_0347 "d-xylose-proton symporter, putative" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 80/240 (33%), Positives = 131/240 (54%)

Query:    82 WLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGS 141
             W+ AF    IA+ +  LFGY  GV++G I+ I++E  F  +P + G VVS  + GAF+G+
Sbjct:    18 WVIAF----IAAFAGILFGYDTGVISGAILFISQE--FHLSPQMNGFVVSAVLIGAFLGA 71

Query:   142 ISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIY 201
             + SG LAD +G +R   ID +  I+G  IS+   S+  ++ GR +VG+ IG+ +   P+Y
Sbjct:    72 LFSGHLADYIGRKRLLIIDALIFIVGTAISSMTVSISWLVIGRIIVGIAIGIASYSAPLY 131

Query:   202 ISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIP-AEDDPHWWRTMLYIASLPGFILALG 260
             ISE++P   RG+L +L Q+   +GI  S  +    A  D   WR+M     +P  +L LG
Sbjct:   132 ISEISPPHRRGALVSLNQLAVTIGIFLSYVVDYYFARHDA--WRSMFAAGVIPAALLLLG 189

Query:   261 MQFTVESPRWLCKGGMLNDAKAVIANLWGES-EINKAIEEFQLVIKKDGSDLDSQWSELL 319
             M     SPRW+   G    A  ++  L G      + +E  +  +++   D  + +S+++
Sbjct:   190 MIVLPYSPRWIFSRGHEEKALWILRKLRGHGPHAEQELEHIRASLQQQKGDWRTLFSKII 249

GO:0015519 "D-xylose:hydrogen symporter activity" evidence=ISS

GO:0015753 "D-xylose transport" evidence=ISS

ASPGD|ASPL0000049573 AN8912 [Emericella nidulans (taxid:162425)]

 Score = 324 (119.1 bits), Expect = 9.0e-29, P = 9.0e-29
 Identities = 86/272 (31%), Positives = 145/272 (53%)

Query:    90 LIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEG---LVVSIFIAGAFVGSISSGS 146
             L AS++  LFGY  G+++  +V +  +L  +G P  E    L+ S+   G+FVG+I +G 
Sbjct:    40 LTASIAGSLFGYDTGIISAVLVYLGSDL--DGRPASENEKQLITSLCSGGSFVGAIIAGL 97

Query:   147 LADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVA 206
              ADK G +    +  +   +GA++   A+S+ +M  GR +VG G+G  +++VP+YI+E++
Sbjct:    98 TADKFGRKPAIYVGCVLFTVGAVLQGAAYSIAQMSVGRLIVGFGVGSASMVVPLYIAELS 157

Query:   207 PTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVE 266
             PTK RG L  L  +    G + S  +G      PH WR M+ +  +P  ILA  + F  E
Sbjct:   158 PTKVRGRLIGLNNMSITGGQVISYGIGAAFAHVPHGWRYMVGLGGVPSIILACLLPFCPE 217

Query:   267 SPRWLCKGGMLNDAKAVIANLW-GESEINKAIEEFQLVIKK-DGS-DL--DS-QWSELLE 320
             SPR L   G   +A+ VI  ++ G S+   A +  +L+++  D S +L  DS +W+++ +
Sbjct:   218 SPRQLVYHGKTQEAETVIRKIYKGASDAQVAAK-VRLIVRACDESRELNKDSTRWAKI-K 275

Query:   321 EPHSRVAFIGDGALASLLVGVTNFAGLRSEKY 352
               HS  A+      A     +   +G  +  Y
Sbjct:   276 LLHSNPAYFRALVCACGFAVIAQMSGFNTLMY 307

GO:0097319 "carbohydrate import into cell" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000329 "fungal-type vacuole membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

TAIR|locus:2009832 INT2 "inositol transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 3.0e-27, P = 3.0e-27
 Identities = 86/250 (34%), Positives = 131/250 (52%)

Query:    71 DQKA-EEGFDLGWLPAFPHVL----IASMSNFLFGYHIGVMNGPIVSIAKEL-GFEGNPI 124
             D+ A +E F L W    P+VL     A +   LFGY  GV++G ++ I  +    + N  
Sbjct:    11 DESAFKECFSLTWKN--PYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRNTW 68

Query:   125 LEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGR 184
             L+ ++VS+ +AGA VG+   G   DKLG R    +     +LGAII A A +   ++ GR
Sbjct:    69 LQEMIVSMAVAGAIVGAAIGGWANDKLGRRSAILMADFLFLLGAIIMAAAPNPSLLVVGR 128

Query:   185 FLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWR 244
               VGLG+G+ ++  P+YISE +P K RG+L +        G   S  + +   D    WR
Sbjct:   129 VFVGLGVGMASMTAPLYISEASPAKIRGALVSTNGFLITGGQFLSYLINLAFTDVTGTWR 188

Query:   245 TMLYIASLPGFILALGMQFTV-ESPRWLCKGGMLNDAKAVIANLWG----ESEINKAIEE 299
              ML IA +P  +L   + FT+ ESPRWL + G   +AKA++  ++     E EI    + 
Sbjct:   189 WMLGIAGIPA-LLQFVLMFTLPESPRWLYRKGREEEAKAILRRIYSAEDVEQEIRALKDS 247

Query:   300 FQLVIKKDGS 309
              +  I ++GS
Sbjct:   248 VETEILEEGS 257

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005366 "myo-inositol:hydrogen symporter activity" evidence=IMP;IDA

GO:0015798 "myo-inositol transport" evidence=IDA

GO:0023052 "signaling" evidence=TAS

GO:0090406 "pollen tube" evidence=TAS

GO:0006863 "purine nucleobase transport" evidence=RCA

UNIPROTKB|P0AEP1 galP "galactose:H+ symporter" [Escherichia coli K-12 (taxid:83333)]

 Score = 305 (112.4 bits), Expect = 5.3e-27, P = 5.3e-27
 Identities = 80/244 (32%), Positives = 134/244 (54%)

Query:    91 IASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADK 150
             +A+++  LFG  IGV+ G +  IA E  F+     +  VVS  + GA VG++ SG L+ K
Sbjct:    21 LAALAGLLFGLDIGVIAGALPFIADE--FQITSHTQEWVVSSMMFGAAVGAVGSGWLSFK 78

Query:   151 LGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKY 210
             LG +++  I  I  + G++ SA A +++ ++  R L+GL +GV +   P+Y+SE+AP K 
Sbjct:    79 LGRKKSLMIGAILFVAGSLFSAAAPNVEVLILSRVLLGLAVGVASYTAPLYLSEIAPEKI 138

Query:   211 RGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRW 270
             RGS+ ++ Q+   +GI+ + +L   A      WR ML +  +P  +L +G+ F  +SPRW
Sbjct:   139 RGSMISMYQLMITIGILGA-YLSDTAFSYTGAWRWMLGVIIIPAILLLIGVFFLPDSPRW 197

Query:   271 LCKGGMLNDAKAVIANLWGES-EINKAIEEFQ--LVIKKDGSDLDSQWSELLEEPHSRVA 327
                     DA+ V+  L   S E  + ++E +  L +K+ G      W+   E  + R A
Sbjct:   198 FAAKRRFVDAERVLLRLRDTSAEAKRELDEIRESLQVKQSG------WALFKENSNFRRA 251

Query:   328 -FIG 330
              F+G
Sbjct:   252 VFLG 255

GO:0055085 "transmembrane transport" evidence=IEA

GO:0015517 "galactose:hydrogen symporter activity" evidence=IDA

GO:0015757 "galactose transport" evidence=IDA

GO:0005886 "plasma membrane" evidence=IEA;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|E9PE47 SLC2A13 "Proton myo-inositol cotransporter" [Homo sapiens (taxid:9606)]

 Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
 Identities = 84/291 (28%), Positives = 147/291 (50%)

Query:    45 VLAAKKQLPELRSRKQKQDGENLLSRDQKAEEGFDLGWLPAFPHVL--IASMSNFLFGYH 102
             +LAA +    L+S      G   L R   A   F     PAF +V+   +++  FLFGY 
Sbjct:    41 LLAAAESSTSLQSAGAGGGGVGDLER--AARRQFQQDETPAFVYVVAVFSALGGFLFGYD 98

Query:   103 IGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTI 162
              GV++G ++ + ++L  +   + + L+VS  +  A V +++ G+L    G R    + + 
Sbjct:    99 TGVVSGAMLLLKRQLSLDA--LWQELLVSSTVGAAAVSALAGGALNGVFGRRAAILLASA 156

Query:   163 PLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGT 222
                 G+ + A A++ + +L GR +VGLGIG+ ++ VP+YI+EV+P   RG L T+  +  
Sbjct:   157 LFTAGSAVLAAANNKETLLAGRLVVGLGIGIASMTVPVYIAEVSPPNLRGRLVTINTLFI 216

Query:   223 CLG-IITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAK 281
               G    S+  G  +      WR ML +A++P  I   G  F  ESPRWL + G    A+
Sbjct:   217 TGGQFFASVVDGAFSYLQKDGWRYMLGLAAVPAVIQFFGFLFLPESPRWLIQKGQTQKAR 276

Query:   282 AVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWS---ELLEEPHSRVAFI 329
              +++ + G   I++  +  +  I+++  ++ S       +L  P +R A I
Sbjct:   277 RILSQMRGNQTIDEEYDSIKNNIEEEEKEVGSAGPVICRMLSYPPTRRALI 327

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-090812-1 slc2a13b "solute carrier family 2 (facilitated glucose transporter), member 13b" [Danio rerio (taxid:7955)]

 Score = 306 (112.8 bits), Expect = 1.1e-26, P = 1.1e-26
 Identities = 85/298 (28%), Positives = 147/298 (49%)

Query:    52 LPELRSRKQKQDGENLLSRDQKAEEGFDLGWLPAFPHVL--IASMSNFLFGYHIGVMNGP 109
             + + R+  + +D   L+    K +     G  P F + L   +++  FLFGY  GV++G 
Sbjct:     1 MEDQRAYARVEDESTLIKTASKRDHELQPG-PPCFVYTLAFFSALGGFLFGYDTGVVSGA 59

Query:   110 IVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAI 169
             ++ + +E       + + L+VSI +  A V +++ G L  + G R    + +     G I
Sbjct:    60 MLLLKREKKLSS--VWQELLVSITVGAAAVSALAGGFLNGRFGRRVCILLASFIFCAGGI 117

Query:   170 ISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLG-IIT 228
             I + A + + +L GR  VGLG+G+ ++ VP+YI+EV+P   RG L T+  +    G  I 
Sbjct:   118 ILSVARNKEALLCGRLTVGLGLGIASMTVPVYIAEVSPPDLRGQLVTVNTLFITGGQFIA 177

Query:   229 SLFLGIPAEDDPH-WWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANL 287
             S+  G  +   PH  WR ML ++ +P  +  LG  F  ESPRWL + G   +A  V+  +
Sbjct:   178 SVVDGAFSYL-PHDGWRFMLGLSVVPAALQFLGFLFLPESPRWLLQKGFTQNALLVLRQI 236

Query:   288 WGESEINKAIEEFQLVIKKDGSDLDSQ---WSELLEEPHSRVAFIGDGA-LASLLVGV 341
              G+ ++ +  E  +  I+++  D+      W  L   P  R   +G G  +   L G+
Sbjct:   237 RGDVDVEEEFESIRCSIQEEQRDVAGGPVLWRMLASPPARRALIVGCGLQMFQQLAGI 294

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015758 "glucose transport" evidence=IDA

GO:0055056 "D-glucose transmembrane transporter activity" evidence=IDA

GO:0035428 "hexose transmembrane transport" evidence=IDA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0WVE9	PLST1_ARATH	No assigned EC number	0.6273	0.9325	0.6335	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh2_kg.1__448__AT1G05030.1	annotation not avaliable (521 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
	Al_scaffold_0003_483	annotation not avaliable (221 aa)			•						0.439

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	356
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	1e-44
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	2e-35
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	3e-24
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	2e-19
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	7e-18
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	2e-16
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	9e-13
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	1e-09
PRK11551	406	PRK11551, PRK11551, putative 3-hydroxyphenylpropio	1e-08
COG0477	338	COG0477, ProP, Permeases of the major facilitator	4e-08
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	2e-07
TIGR01299	742	TIGR01299, synapt_SV2, synaptic vesicle protein SV	5e-07
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	4e-05
COG0738	422	COG0738, FucP, Fucose permease [Carbohydrate trans	2e-04
TIGR00893	399	TIGR00893, 2A0114, D-galactonate transporter	3e-04
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	3e-04
PRK10504	471	PRK10504, PRK10504, putative transporter; Provisio	4e-04
TIGR00887	502	TIGR00887, 2A0109, phosphate:H+ symporter	0.001
TIGR00894	465	TIGR00894, 2A0114euk, Na(+)-dependent inorganic ph	0.002
TIGR00710	385	TIGR00710, efflux_Bcr_CflA, drug resistance transp	0.002
COG2223	417	COG2223, NarK, Nitrate/nitrite transporter [Inorga	0.003
PRK11102	377	PRK11102, PRK11102, bicyclomycin/multidrug efflux	0.003

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score =  158 bits (402), Expect = 1e-44
 Identities = 89/271 (32%), Positives = 145/271 (53%), Gaps = 17/271 (6%)

Query: 89  VLIASMSNFLFGYHIGVMNGPIVSIAKELGF---------EGNPILEGLVVSIFIAGAFV 139
            L+A++  FLFGY  GV+   +  I     F           + +L GL+VSIF  G  +
Sbjct: 2   ALVAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCLI 61

Query: 140 GSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAH--SLDEMLWGRFLVGLGIGVNTVL 197
           GS+ +G L D+ G +++  I  +  ++GA++   A   S   ++ GR +VGLG+G  +VL
Sbjct: 62  GSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISVL 121

Query: 198 VPIYISEVAPTKYRGSLGTLCQVGTCLGIITS--LFLGIPAEDDPHWWRTMLYIASLPGF 255
           VP+YISE+AP K RG+LG+L Q+G   GI+ +  + LG+    +   WR  L +  +P  
Sbjct: 122 VPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPAI 181

Query: 256 ILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQW 315
           +L +G+ F  ESPRWL   G L +A+AV+A L G S++++ I+E +  +++      + W
Sbjct: 182 LLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVSDVDQEIQEEKDSLERSVEAEKASW 241

Query: 316 SELLEEPHSRVAFIGDGALASLLVGVTNFAG 346
            EL      R   +    +  +L       G
Sbjct: 242 LELFRGKTVRQRLL----MGVMLQIFQQLTG 268

Length = 449

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score =  134 bits (338), Expect = 2e-35
 Identities = 77/234 (32%), Positives = 126/234 (53%), Gaps = 11/234 (4%)

Query: 85  AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNP------ILEGLVVSIFIAGAF 138
                LIA++   +FGY  GV+ G +   A E  F           L GLVVSIF+ G F
Sbjct: 26  VALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGF 85

Query: 139 VGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAH---SLDEMLWGRFLVGLGIGVNT 195
           +G++ +G L+D+ G +++  I  +  ++GAI+   A    S++ ++ GR L+G+G+G+ +
Sbjct: 86  IGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIAS 145

Query: 196 VLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPH--WWRTMLYIASLP 253
            LVP+Y+SE+AP   RG+L +L Q+    GI+ +   G       +   WR  L +  +P
Sbjct: 146 ALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIP 205

Query: 254 GFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKD 307
             +L LG+ F  ESPRWL   G + +A+  +A L G S  +K + +   +I   
Sbjct: 206 AGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIK 259

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score =  101 bits (253), Expect = 3e-24
 Identities = 57/177 (32%), Positives = 90/177 (50%), Gaps = 3/177 (1%)

Query: 89  VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLA 148
           +L+  +  FL G   G+++  +  +A++LG   +    GL+VS F  G  +GS+ +G L+
Sbjct: 1   LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQA--GLIVSAFSLGYALGSLLAGYLS 58

Query: 149 DKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPT 208
           D+ G RR   +  +   LG+++ A A SL  +L GRFL+GLG G         I+E  P 
Sbjct: 59  DRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPP 118

Query: 209 KYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTV 265
           K RG    L   G  LG +    LG     +   WR +  I ++ G +LAL + F +
Sbjct: 119 KERGRALGLFSAGFGLGALLGPLLG-GLLAESLGWRWLFLILAILGLLLALLLLFLL 174

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score = 89.0 bits (221), Expect = 2e-19
 Identities = 56/242 (23%), Positives = 105/242 (43%), Gaps = 25/242 (10%)

Query: 89  VLIASMSNFLFGYHIGVMNGPIVSI------AKELGFEGNPILEGLVVSIFIAGAFVGSI 142
            L+A++   LFGY   V++G + S+       + L       L G  V+  + G  +G  
Sbjct: 14  TLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGA 73

Query: 143 SSGSLADKLGCRRTFQIDTIPLILGAIISA--------QAHSLDEMLWG----RFLVGLG 190
             G  +++ G R + +I  +   + A+ SA                +      R + G+G
Sbjct: 74  LGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIG 133

Query: 191 IGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFL--GIPAEDDPHW-----W 243
           +G+ ++L P+YI+E+AP   RG L +  Q     G +   F+   I    D  W     W
Sbjct: 134 VGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGW 193

Query: 244 RTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLV 303
           R M    ++P  +  + + F  E+PR+L   G    A+ ++  + G +   +A++E +  
Sbjct: 194 RYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQALQEIKHS 253

Query: 304 IK 305
           + 
Sbjct: 254 LD 255

Length = 479

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score = 84.3 bits (209), Expect = 7e-18
 Identities = 61/205 (29%), Positives = 95/205 (46%), Gaps = 6/205 (2%)

Query: 127 GLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFL 186
            L  S F  G  +GS   G L+D+ G ++   + T+   +  +++A + +    L  R L
Sbjct: 130 DLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL 189

Query: 187 VGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTM 246
           VG+GIG   V   +  +E  P K R  +GTL QV   LG++    L + A   P  WR +
Sbjct: 190 VGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLV---LLPLVAYFIPD-WRWL 245

Query: 247 LYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKK 306
               SLP F+  L   F  ESPRWL   G + +A  ++  +   +      E   L ++K
Sbjct: 246 QLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEK 305

Query: 307 DGSDLDSQWS--ELLEEPHSRVAFI 329
           D S    Q+S  +L   P+ R   +
Sbjct: 306 DLSSSKKQYSFLDLFRTPNLRKTTL 330

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 79.3 bits (196), Expect = 2e-16
 Identities = 54/190 (28%), Positives = 88/190 (46%), Gaps = 10/190 (5%)

Query: 100 GYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQI 159
           GY +  M     +I+ E G +  P+  G + S  + G   G++  G LAD++G RR    
Sbjct: 30  GYDLAAMGFAAPAISAEWGLD--PVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLW 87

Query: 160 DTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQ 219
             +   +  ++ A A ++ ++L  RFL GLG+G     +   +SE AP ++RG+   L  
Sbjct: 88  SILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMF 147

Query: 220 VGTCLGIITSLFLG---IPAEDDPHWWRTMLYIASL-PGFILALGMQFTVESPRWLCKGG 275
            G  +G     FL    IP       WR++ Y+  + P  +L L M+F  ES  +L    
Sbjct: 148 CGYPIGAAVGGFLAGWLIPV----FGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKR 203

Query: 276 MLNDAKAVIA 285
                + V A
Sbjct: 204 PETVRRIVNA 213

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 68.2 bits (167), Expect = 9e-13
 Identities = 44/171 (25%), Positives = 69/171 (40%), Gaps = 5/171 (2%)

Query: 89  VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLA 148
           + +A+    L    +G        +A++LG     I  GL+++ F  G  +    +G L+
Sbjct: 1   LFLAAFLAGLGRSLLGPALPLY--LAEDLGISPTEI--GLLLTAFSLGYALAQPLAGRLS 56

Query: 149 DKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPT 208
           D+ G RR   I  +   LG ++   A SL  +L  R L GLG G         I++  P 
Sbjct: 57  DRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPP 116

Query: 209 KYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILAL 259
           + RG    L   G  LG      LG         WR    I ++   + A+
Sbjct: 117 EERGRALGLLSAGFGLGAALGPLLG-GLLASLFGWRAAFLILAILALLAAV 166

Length = 346

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 45/181 (24%), Positives = 78/181 (43%), Gaps = 3/181 (1%)

Query: 80  LGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFV 139
           L  L     +L+ +++ FL  +    +   +    +E+         GL++S+F  G  +
Sbjct: 168 LLLLFLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLS-AAEAGLLLSLFGLGGIL 226

Query: 140 GSISSGSLADKLGCRRTFQIDTIPL-ILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLV 198
           G++  G L+D+LG RR   +  + L  LG ++ A A SL  +L    L+G G+G     +
Sbjct: 227 GALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPAL 286

Query: 199 PIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILA 258
               SE+AP + RG+   L      LG      L      D   +  +  I +    + A
Sbjct: 287 LTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLL-LDTGGYGGVFLILAALALLAA 345

Query: 259 L 259
           L
Sbjct: 346 L 346

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

 Score = 55.7 bits (135), Expect = 1e-08
 Identities = 49/183 (26%), Positives = 81/183 (44%), Gaps = 12/183 (6%)

Query: 113 IAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISA 172
           +A+E G   +    G   S  I G   G++  G LAD++G +R   +      L ++ +A
Sbjct: 41  MAQEFGL--DVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATA 98

Query: 173 QAHSLDEMLWGRFLVGLGIGVNTVLVPIYI---SEVAPTKYRGSLGTLCQVGT-CLGIIT 228
           QA     +L  R L G+G+G     +P  I   SE    + RG+  +L   G    G + 
Sbjct: 99  QAWDFPSLLVARLLTGVGLG---GALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALA 155

Query: 229 SLFLGIPAEDDPHWWRTMLYIASL-PGFILALGMQFTVESPRWLCKGGMLNDAKAVIANL 287
           S+   + A D    WR + Y+  + P  ++ L M++  ES  +    G       V+  L
Sbjct: 156 SVIGVLAAGDAA--WRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAPVLRAL 213

Query: 288 WGE 290
           +GE
Sbjct: 214 FGE 216

Length = 406

>gnl|CDD|223553 COG0477, ProP, Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

 Score = 53.9 bits (128), Expect = 4e-08
 Identities = 44/191 (23%), Positives = 79/191 (41%), Gaps = 8/191 (4%)

Query: 89  VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLA 148
           +L  +++  L G  +G+++  +  +   L      +L GL++S F  G  +GS+ +G L 
Sbjct: 4   LLALALAALLLGLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLG 63

Query: 149 DKLGCRRTFQIDTIPLILGAIISAQAHSLD--EMLWGRFLVGLGIGVNTVLVPIYISEVA 206
           D+ G R+   I  +  +LG ++ A A ++    +L  R L GLG G    +    +SE  
Sbjct: 64  DRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWF 123

Query: 207 PTKYRGSL------GTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALG 260
           P      L           +G  LG + +  L             +  +  L   IL L 
Sbjct: 124 PEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLLLLILVLL 183

Query: 261 MQFTVESPRWL 271
           +   + +PR  
Sbjct: 184 LDLLLAAPRLP 194

Length = 338

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 51.7 bits (124), Expect = 2e-07
 Identities = 42/167 (25%), Positives = 72/167 (43%), Gaps = 10/167 (5%)

Query: 69  SRDQKAEEGFDLGWLPAF-----PHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNP 123
           S+  K  E      +PA+       VL   ++  LFG+    +   +    + LG   + 
Sbjct: 179 SKRPKPAEEAPAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEVLGL--SA 236

Query: 124 ILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWG 183
           +L GL++ +      +G +  G L+D+LG RR   +  + LIL A+  A     +  LW 
Sbjct: 237 LLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWL 296

Query: 184 R---FLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGII 227
                L+G G G+    +   +S++AP + RG+   L      LG  
Sbjct: 297 LVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGA 343

Length = 346

>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2

 Score = 51.1 bits (122), Expect = 5e-07
 Identities = 43/171 (25%), Positives = 67/171 (39%), Gaps = 12/171 (7%)

Query: 126 EGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRF 185
           +G++  I   G  VG+   G LADKLG ++   I        A  S+        L+ R 
Sbjct: 204 KGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRL 263

Query: 186 LVGLGIGVNTVLVPIYISEVAPTKYRGS-LGTLCQVGTCLGIITSLF-----------LG 233
           L G GIG    +V  Y +E    + RG  L  LC      GI  +               
Sbjct: 264 LSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQ 323

Query: 234 IPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVI 284
           + +    H WR  + + + P       + F  ESPR+  + G  ++A  ++
Sbjct: 324 MGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMIL 374

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 44.9 bits (107), Expect = 4e-05
 Identities = 31/149 (20%), Positives = 53/149 (35%), Gaps = 21/149 (14%)

Query: 127 GLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFL 186
           G +++ +  G  +G+     L  +L  RR         I+  ++SA A S   +L  R L
Sbjct: 51  GQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARAL 110

Query: 187 VGLGIGVNTVLVPIYISEVAPTKYRG----------SLGTLCQVGTCLGIITSLFLGIPA 236
            GL  GV   +     + + P   RG          +L T+  +G  LG       G   
Sbjct: 111 AGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATV--LGVPLGTFLGQLFG--- 165

Query: 237 EDDPHWWRTMLYIASLPGFILALGMQFTV 265
                 WR      ++   +  L +   +
Sbjct: 166 ------WRATFLAIAVLALLALLLLWKLL 188

Length = 394

>gnl|CDD|223809 COG0738, FucP, Fucose permease [Carbohydrate transport and metabolism]

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 38/153 (24%), Positives = 65/153 (42%), Gaps = 6/153 (3%)

Query: 84  PAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSIS 143
                VL+ S+  FL+G+ I  +N  ++   KE+ F+       L+   F  G F+ S+ 
Sbjct: 11  VKLAFVLLTSLF-FLWGF-ITCLNDILIPHLKEV-FDLTYFEASLIQFAFFGGYFIMSLP 67

Query: 144 SGSLADKLGCRRTFQIDTIPLILGAII---SAQAHSLDEMLWGRFLVGLGIGVNTVLVPI 200
           +G L  KLG +    +  +   +GA +   +A + S    L   F++  GIG+       
Sbjct: 68  AGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANP 127

Query: 201 YISEVAPTKYRGSLGTLCQVGTCLGIITSLFLG 233
           Y++ +   +       L Q    LG I    LG
Sbjct: 128 YVTLLGKPESAAFRLNLAQAFNGLGAILGPLLG 160

Length = 422

>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 34/193 (17%), Positives = 65/193 (33%), Gaps = 26/193 (13%)

Query: 111 VSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAII 170
             + ++LG        G V S F  G  VG    G L D+ G R+T     + +++  + 
Sbjct: 18  PMLQEDLGLSAAQY--GYVFSAFSWGYVVGQFPGGWLLDRFGARKTL---AVFIVIWGVF 72

Query: 171 SAQAHSLDEMLWG----RFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLG- 225
           +    +           R L+G         + + ++   P   R +  ++      LG 
Sbjct: 73  TG-LQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGG 131

Query: 226 -IITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTV----ESPRWLCK------- 273
            I   L   I        W+    I  + G I  +     +    +  +WL +       
Sbjct: 132 IIGGPLVGWILIH---FSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKYIVV 188

Query: 274 GGMLNDAKAVIAN 286
           GG+L + +    +
Sbjct: 189 GGLLAEQQGKGPS 201

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 29/127 (22%), Positives = 51/127 (40%), Gaps = 3/127 (2%)

Query: 127 GLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFL 186
           GL+++ +  G  + S  SG L D+ G +    +     +L   + A + ++  ++  RFL
Sbjct: 1   GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFL 60

Query: 187 VGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHW-WRT 245
            G G     V     I+++ P + RG    L   G  LG +    LG          WR 
Sbjct: 61  QGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLG--GVLAQFLGWRA 118

Query: 246 MLYIASL 252
                ++
Sbjct: 119 PFLFLAI 125

Length = 141

>gnl|CDD|182502 PRK10504, PRK10504, putative transporter; Provisional

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 31/107 (28%), Positives = 57/107 (53%), Gaps = 10/107 (9%)

Query: 99  FGYHIGVMNGPIV-----SIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGC 153
           FG+ +  ++  IV     S+A+ LG   +P+   +V+  ++    V   +SG LAD++G 
Sbjct: 17  FGFFMQSLDTTIVNTALPSMAQSLG--ESPLHMHMVIVSYVLTVAVMLPASGWLADRVGV 74

Query: 154 RRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPI 200
           R  F    +   LG++  A + +L+E+L  R L G+G     ++VP+
Sbjct: 75  RNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVG---GAMMVPV 118

Length = 471

>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 8/101 (7%)

Query: 121 GNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQ-------IDTIPLILGAIISAQ 173
               +   V      G   G +  G LADKLG +R +        I T+   L    S +
Sbjct: 53  LPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPK 112

Query: 174 AHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSL 214
           +       W RF +G+GIG +  L  I  SE A  K+RG++
Sbjct: 113 SVMATLCFW-RFWLGVGIGGDYPLSAIITSEFATKKWRGAM 152

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502

>gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate cotransporter

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 32/127 (25%), Positives = 49/127 (38%), Gaps = 3/127 (2%)

Query: 119 FEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLD 178
           F+ +  L+GL++S    G  +  I  G LA K   + +  I      + +I+   A    
Sbjct: 71  FKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGG 130

Query: 179 EML--WGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFL-GIP 235
             L  + R + GL  G  +      I + AP K R  L  +   G  LG    L + G  
Sbjct: 131 IALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWL 190

Query: 236 AEDDPHW 242
            E    W
Sbjct: 191 CESWGGW 197

[Transport and binding proteins, Anions]. Length = 465

>gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA subfamily

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 26/156 (16%), Positives = 61/156 (39%), Gaps = 19/156 (12%)

Query: 112 SIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIIS 171
            IA +L    + +   + +++++ G   G +  G L+D+ G R    +      L ++  
Sbjct: 30  EIAADLSTPASIV--QMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGL 87

Query: 172 AQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLF 231
           A +++++ +L  RF+   G    +V+    + ++ P +         ++     I+  + 
Sbjct: 88  ALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGE---------ELSRIYSILMPVL 138

Query: 232 LGIPAED-------DPHW-WRTMLYIASLPGFILAL 259
              PA              W  +    SL G +L+ 
Sbjct: 139 ALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSA 174

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. Length = 385

>gnl|CDD|225133 COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

 Score = 38.8 bits (91), Expect = 0.003
 Identities = 34/142 (23%), Positives = 55/142 (38%), Gaps = 16/142 (11%)

Query: 89  VLIASMSNFLFGYHIGVMNGPI-VSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSL 147
            L  S   F  G+ +  +  P+ V I  + G        GL+V+I I    +  +  G L
Sbjct: 15  NLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQK--GLLVAIPILVGALLRLPYGFL 72

Query: 148 ADKLGCRRTFQIDTIPLI---LGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISE 204
            D+ G R+   +  + L+   LG   +    S  ++L    L+GL      V +P   S 
Sbjct: 73  TDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGMP-NASF 131

Query: 205 VAPTKYRGSLGTLCQVGTCLGI 226
             P +         + G  LGI
Sbjct: 132 FFPKE---------KQGLALGI 144

Length = 417

>gnl|CDD|182964 PRK11102, PRK11102, bicyclomycin/multidrug efflux system; Provisional

 Score = 38.7 bits (91), Expect = 0.003
 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 2/78 (2%)

Query: 112 SIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIIS 171
            IA + G     +   L  S +I G  +G +  G +AD  G +      T+   L A+  
Sbjct: 16  VIAADFGVSAGSVQMTL--SAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVAC 73

Query: 172 AQAHSLDEMLWGRFLVGL 189
           A A ++D++++ RFL GL
Sbjct: 74  ALAQTIDQLIYMRFLHGL 91

Length = 377

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	356
KOG0569	485	consensus Permease of the major facilitator superf	99.97
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.96
KOG0254	513	consensus Predicted transporter (major facilitator	99.94
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.93
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.93
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.92
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.92
TIGR00898	505	2A0119 cation transport protein.	99.91
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.91
PRK10642	490	proline/glycine betaine transporter; Provisional	99.91
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.91
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.91
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.9
PRK03545	390	putative arabinose transporter; Provisional	99.9
TIGR00891	405	2A0112 putative sialic acid transporter.	99.9
PRK11663	434	regulatory protein UhpC; Provisional	99.89
PRK12307	426	putative sialic acid transporter; Provisional	99.89
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.89
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.89
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.89
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.88
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.88
PLN00028	476	nitrate transmembrane transporter; Provisional	99.88
TIGR00895	398	2A0115 benzoate transport.	99.88
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.88
TIGR00893	399	2A0114 d-galactonate transporter.	99.88
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.87
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.87
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.87
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.87
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.87
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.87
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.86
PRK09952	438	shikimate transporter; Provisional	99.86
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.86
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.86
PRK09705	393	cynX putative cyanate transporter; Provisional	99.86
PRK10091	382	MFS transport protein AraJ; Provisional	99.86
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.85
TIGR00805	633	oat sodium-independent organic anion transporter.	99.85
TIGR00900	365	2A0121 H+ Antiporter protein.	99.85
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.85
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.85
PRK03893	496	putative sialic acid transporter; Provisional	99.85
KOG2532	466	consensus Permease of the major facilitator superf	99.85
PRK03699	394	putative transporter; Provisional	99.85
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.85
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.85
PRK10504	471	putative transporter; Provisional	99.84
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.84
PRK11043	401	putative transporter; Provisional	99.84
KOG2533	495	consensus Permease of the major facilitator superf	99.84
PRK10133	438	L-fucose transporter; Provisional	99.83
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.83
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.83
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.83
PRK15075	434	citrate-proton symporter; Provisional	99.82
PRK10642	490	proline/glycine betaine transporter; Provisional	99.82
PRK03633	381	putative MFS family transporter protein; Provision	99.82
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.81
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.81
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.81
PRK05122	399	major facilitator superfamily transporter; Provisi	99.8
PRK12382	392	putative transporter; Provisional	99.79
PRK10054	395	putative transporter; Provisional	99.78
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.78
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.78
PRK09874	408	drug efflux system protein MdtG; Provisional	99.78
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.78
PRK10489	417	enterobactin exporter EntS; Provisional	99.78
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.77
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.77
PTZ00207	591	hypothetical protein; Provisional	99.77
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.76
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.75
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.75
KOG2615	451	consensus Permease of the major facilitator superf	99.75
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.74
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.74
PRK11010	491	ampG muropeptide transporter; Validated	99.73
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.73
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.73
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.73
PRK11902	402	ampG muropeptide transporter; Reviewed	99.72
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.7
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.7
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.69
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.69
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.69
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.67
TIGR00901	356	2A0125 AmpG-related permease.	99.66
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.65
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.65
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.64
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.63
PRK09528	420	lacY galactoside permease; Reviewed	99.63
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.62
PRK15011	393	sugar efflux transporter B; Provisional	99.62
PRK15011	393	sugar efflux transporter B; Provisional	99.61
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.6
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.6
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.59
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.59
PRK05122	399	major facilitator superfamily transporter; Provisi	99.58
PRK09528	420	lacY galactoside permease; Reviewed	99.58
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.57
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.57
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.56
PRK12382	392	putative transporter; Provisional	99.55
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.53
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.52
PRK09874	408	drug efflux system protein MdtG; Provisional	99.52
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.52
PRK09952	438	shikimate transporter; Provisional	99.51
TIGR00893	399	2A0114 d-galactonate transporter.	99.51
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.51
PRK03699	394	putative transporter; Provisional	99.51
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.51
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.5
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.49
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.49
PRK09705	393	cynX putative cyanate transporter; Provisional	99.49
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.48
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.47
PRK03893	496	putative sialic acid transporter; Provisional	99.47
PRK03633	381	putative MFS family transporter protein; Provision	99.47
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.45
TIGR00891	405	2A0112 putative sialic acid transporter.	99.45
PRK03545	390	putative arabinose transporter; Provisional	99.45
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.44
PRK10489	417	enterobactin exporter EntS; Provisional	99.44
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.44
TIGR00895	398	2A0115 benzoate transport.	99.43
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.42
KOG0569	485	consensus Permease of the major facilitator superf	99.42
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.41
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.4
PRK11663	434	regulatory protein UhpC; Provisional	99.39
PRK15075	434	citrate-proton symporter; Provisional	99.39
PRK12307	426	putative sialic acid transporter; Provisional	99.39
TIGR00900	365	2A0121 H+ Antiporter protein.	99.39
TIGR00898	505	2A0119 cation transport protein.	99.38
PRK10504	471	putative transporter; Provisional	99.37
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.37
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.37
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.37
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.36
KOG3626	735	consensus Organic anion transporter [Secondary met	99.35
PLN00028	476	nitrate transmembrane transporter; Provisional	99.34
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.34
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.34
PRK11010	491	ampG muropeptide transporter; Validated	99.33
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.33
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.33
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.32
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.32
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	99.31
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.3
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.29
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.29
KOG2563	480	consensus Permease of the major facilitator superf	99.29
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.28
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.27
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.27
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.27
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.25
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.25
PRK10091	382	MFS transport protein AraJ; Provisional	99.23
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.22
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.22
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.22
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.21
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.21
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.21
PRK09848	448	glucuronide transporter; Provisional	99.2
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.19
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.19
PRK10054	395	putative transporter; Provisional	99.19
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.18
PRK10429	473	melibiose:sodium symporter; Provisional	99.18
PF13347	428	MFS_2: MFS/sugar transport protein	99.17
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.15
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.15
PRK11902	402	ampG muropeptide transporter; Reviewed	99.15
TIGR00901	356	2A0125 AmpG-related permease.	99.14
PRK09669	444	putative symporter YagG; Provisional	99.13
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.13
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.12
PF13347	428	MFS_2: MFS/sugar transport protein	99.1
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.1
PRK10429	473	melibiose:sodium symporter; Provisional	99.08
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.07
PRK10133	438	L-fucose transporter; Provisional	99.07
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.07
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.05
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.05
PRK09669	444	putative symporter YagG; Provisional	99.04
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.03
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.01
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.01
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.01
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.0
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.99
PRK11043	401	putative transporter; Provisional	98.98
PRK11462	460	putative transporter; Provisional	98.94
KOG0254	513	consensus Predicted transporter (major facilitator	98.93
COG0477	338	ProP Permeases of the major facilitator superfamil	98.91
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.91
KOG3762	618	consensus Predicted transporter [General function	98.89
COG2211	467	MelB Na+/melibiose symporter and related transport	98.86
PRK09848	448	glucuronide transporter; Provisional	98.85
PRK11462	460	putative transporter; Provisional	98.84
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.84
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.83
KOG2532	466	consensus Permease of the major facilitator superf	98.83
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.76
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.76
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.73
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.71
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.69
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.68
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	98.67
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.67
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.67
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.65
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.65
COG2211	467	MelB Na+/melibiose symporter and related transport	98.58
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.56
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.55
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.52
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.49
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.49
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.44
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.43
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	98.42
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.4
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.37
PTZ00207	591	hypothetical protein; Provisional	98.35
KOG2533	495	consensus Permease of the major facilitator superf	98.29
PF12832	77	MFS_1_like: MFS_1 like family	98.26
KOG2615	451	consensus Permease of the major facilitator superf	98.03
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.02
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.95
KOG0637	498	consensus Sucrose transporter and related proteins	97.94
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	97.89
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	97.78
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	97.72
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.62
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.58
KOG3098	461	consensus Uncharacterized conserved protein [Funct	97.54
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	97.44
KOG3098	461	consensus Uncharacterized conserved protein [Funct	97.37
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.34
PRK03612	521	spermidine synthase; Provisional	97.34
COG3202	509	ATP/ADP translocase [Energy production and convers	97.3
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	97.23
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	97.23
KOG1330	493	consensus Sugar transporter/spinster transmembrane	97.16
KOG2563	480	consensus Permease of the major facilitator superf	97.07
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.03
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	96.96
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	96.96
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	96.72
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	96.63
KOG2325	488	consensus Predicted transporter/transmembrane prot	96.59
TIGR00805	633	oat sodium-independent organic anion transporter.	96.45
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	96.28
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	96.23
KOG3762	618	consensus Predicted transporter [General function	96.14
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	95.9
KOG3810	433	consensus Micronutrient transporters (folate trans	95.59
KOG3097	390	consensus Predicted membrane protein [Function unk	95.58
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	95.01
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	93.48
KOG0637	498	consensus Sucrose transporter and related proteins	90.54
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	88.88
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	87.73
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	87.56
KOG3626	735	consensus Organic anion transporter [Secondary met	87.47
KOG3880	409	consensus Predicted small molecule transporter inv	87.08
PF06912	209	DUF1275: Protein of unknown function (DUF1275); In	86.68
COG4262	508	Predicted spermidine synthase with an N-terminal m	86.53
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	86.5
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	85.26
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	84.7
COG5336	116	Uncharacterized protein conserved in bacteria [Fun	82.79
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	82.23

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.97  E-value=5.2e-28  Score=220.63  Aligned_cols=266  Identities=30%  Similarity=0.573  Sum_probs=216.0

Q ss_pred             HHHHHHHHHHHHHhhhhcchhhHHHHH--------HHhCCCCCh----hHHHHHHHHHHHHHHHHHHhHHhhhhhhchhH
Q 018408           88 HVLIASMSNFLFGYHIGVMNGPIVSIA--------KELGFEGNP----ILEGLVVSIFIAGAFVGSISSGSLADKLGCRR  155 (356)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~  155 (356)
                      ....+.++.+..||....+++..+.+.        +.+|...++    ...+.+++++.+|.++|+++.++++||+|||.
T Consensus        12 ~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~   91 (485)
T KOG0569|consen   12 AVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKN   91 (485)
T ss_pred             HHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchH
Confidence            345556666888999988888765443        335533333    24677888999999999999999999999999


Q ss_pred             HHHHhHHHHHHHHHHHHHh---hhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHh
Q 018408          156 TFQIDTIPLILGAIISAQA---HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFL  232 (356)
Q Consensus       156 ~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i  232 (356)
                      .++++.++..++.++..++   +++.+++++|++.|+..|......+.|+.|..|.+.||....+.+++..+|..++..+
T Consensus        92 ~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~  171 (485)
T KOG0569|consen   92 ALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVL  171 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHH
Confidence            9999988888888777654   6888999999999999999999999999999999999999999999999999999776


Q ss_pred             hhc-cCCCCchhHHHHHHhHHHHHHHHHHhhcccCChHHHHh-cCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCC-
Q 018408          233 GIP-AEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCK-GGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGS-  309 (356)
Q Consensus       233 ~~~-l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  309 (356)
                      +.. +......|.+.+.+.++++++..+...++||||+|+.. +++.+||++.++.+|++++++++.++..++.++++. 
T Consensus       172 ~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~  251 (485)
T KOG0569|consen  172 GLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELE  251 (485)
T ss_pred             ccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccc
Confidence            543 33333339999999999999999999999999999987 899999999999999998766655554444433322 


Q ss_pred             -CCccchhhhcccCcchhhHHHH--------------------------------HHHHHHHHHHHHHHHhhhhhhc
Q 018408          310 -DLDSQWSELLEEPHSRVAFIGD--------------------------------GALASLLVGVTNFAGLRSEKYC  353 (356)
Q Consensus       310 -~~~~~~~~~l~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~  353 (356)
                       +++.++++++++|..|+..+..                                +..++...++++++.++.+.++
T Consensus       252 ~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~l  328 (485)
T KOG0569|consen  252 KKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFL  328 (485)
T ss_pred             cccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             2467999999999888764333                                5788888899999988887664

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.96  E-value=3.8e-27  Score=227.88  Aligned_cols=206  Identities=22%  Similarity=0.272  Sum_probs=182.4

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHH
Q 018408           84 PAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIP  163 (356)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~  163 (356)
                      ..+..+++++++.+..+++...++..+|.+.+++|+  +..+.+++.+++.+|++++.+++|+++||+|||+++++++++
T Consensus       164 ~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gl--s~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil  241 (742)
T TIGR01299       164 FQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCI--PDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSV  241 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            344556667777888888888888999999999998  566689999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCC---
Q 018408          164 LILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP---  240 (356)
Q Consensus       164 ~~i~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~---  240 (356)
                      .+++.++++++++++.++++|++.|++.|+..+....++.|++|++.||+.+++..+++.+|.++++.++..+....   
T Consensus       242 ~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~  321 (742)
T TIGR01299       242 NGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWS  321 (742)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence            99999999999999999999999999999999999999999999999999999999999999999988765443211   


Q ss_pred             ---------chhHHHHHHhHHHHHHHHHHhhcccCChHHHHhcCCHHHHHHHHHHHcCCc
Q 018408          241 ---------HWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGES  291 (356)
Q Consensus       241 ---------~~w~~~~~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~  291 (356)
                               .+||+.+++.+++.++.++..+++||+|+|+..+++.+++.+.+++++..+
T Consensus       322 ~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n  381 (742)
T TIGR01299       322 FQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTN  381 (742)
T ss_pred             hccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCC
Confidence                     139999999888888888888889999999999999999999999887654

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.94  E-value=6.5e-24  Score=201.50  Aligned_cols=265  Identities=34%  Similarity=0.603  Sum_probs=204.0

Q ss_pred             HHHHHHHHHHHHHHHhh--hhcchhhHHHHHHHhCCC---CCh--hHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHH
Q 018408           86 FPHVLIASMSNFLFGYH--IGVMNGPIVSIAKELGFE---GNP--ILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQ  158 (356)
Q Consensus        86 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~---~~~--~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~  158 (356)
                      ....+...++.+..+++  .+...+....+.+.....   .+.  .+.+++.+.+.+|..+++++.|+++|++|||+.++
T Consensus        44 ~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~  123 (513)
T KOG0254|consen   44 ILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLL  123 (513)
T ss_pred             HHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            44456667777777775  455555555555533211   111  23589999999999999999999999999999999


Q ss_pred             HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCC
Q 018408          159 IDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAED  238 (356)
Q Consensus       159 ~~~~~~~i~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~  238 (356)
                      ++.++..++.+++++++|+..++++|++.|+|.|+...+.+.|++|+.|++.||...++.+....+|..++..++....+
T Consensus       124 ~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~  203 (513)
T KOG0254|consen  124 LAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSK  203 (513)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999665554433


Q ss_pred             C-CchhHHHHHHhHHHHHHHHHHhhcccCChHHHHhcCCHHHHHHHHHHHcC--CcchHHHHHHHHHHHH-hc-CCCCcc
Q 018408          239 D-PHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWG--ESEINKAIEEFQLVIK-KD-GSDLDS  313 (356)
Q Consensus       239 ~-~~~w~~~~~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~-~~~~~~  313 (356)
                      . .+ ||..+.+..+++++.++..+++||+|+|+.++++.+++++.++++++  +.+.+.+.++.+.... +. ......
T Consensus       204 ~~~~-Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (513)
T KOG0254|consen  204 VYAG-WRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKA  282 (513)
T ss_pred             CCcc-HHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccc
Confidence            2 25 99999999999998888888899999999999999999999999998  3444444444442211 11 111122


Q ss_pred             chhhhcccCcchhhHHHH-----------------------------H-HHHHHHHHHHHHHHhhhhh
Q 018408          314 QWSELLEEPHSRVAFIGD-----------------------------G-ALASLLVGVTNFAGLRSEK  351 (356)
Q Consensus       314 ~~~~~l~~~~~~~~~~~~-----------------------------~-~~~~~~~~~~~~~~~~~~~  351 (356)
                      .+.++++....++..+++                             . .....+++++++++++++.
T Consensus       283 ~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~t~~~~  350 (513)
T KOG0254|consen  283 SWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILGVVNFLGTLVAT  350 (513)
T ss_pred             cHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHH
Confidence            467777744455555454                             2 5666777777777777663

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.93  E-value=2.5e-24  Score=204.17  Aligned_cols=204  Identities=21%  Similarity=0.306  Sum_probs=170.8

Q ss_pred             hHHHHHHHHHHHHHHHhhhhcchhhHHHHHHHh-C--CCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhH
Q 018408           85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKEL-G--FEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDT  161 (356)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g--~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~  161 (356)
                      .+..+.++.++.+.++++....+...|.+..++ +  ...++.+.+++.+.+.+++.++.++.|+++||+|||+++.++.
T Consensus        14 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~   93 (502)
T TIGR00887        14 HFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMEL   93 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence            345567788889999999999998888777653 1  1224556789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhh------HHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhc
Q 018408          162 IPLILGAIISAQAHS------LDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIP  235 (356)
Q Consensus       162 ~~~~i~~~~~~~~~~------~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~  235 (356)
                      ++..++.++++++++      +..++++|++.|++.|+..+....+++|++|+++||+++++.+.+..+|..+++.++..
T Consensus        94 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~  173 (502)
T TIGR00887        94 IIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALI  173 (502)
T ss_pred             HHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999998888765      67899999999999999999999999999999999999999999999999888877654


Q ss_pred             cCC-----------------------CCchhHHHHHHhHHHHHHHHHHhhcccCChHHHHhcCCH-HHHHHHHHHHcC
Q 018408          236 AED-----------------------DPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGML-NDAKAVIANLWG  289 (356)
Q Consensus       236 l~~-----------------------~~~~w~~~~~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~-~~~~~~~~~~~~  289 (356)
                      +..                       ..+ ||+.+.+.+++.++..+..+++||+|+|+..+++. +++++.+++.++
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~  250 (502)
T TIGR00887       174 VLAGFKHSLEAAADEASCTGSCVPAVDYM-WRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQ  250 (502)
T ss_pred             HHHHhccccccccccccccccccchhccc-HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhc
Confidence            321                       124 99999998888888888888899999999887765 446666666544

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.93  E-value=1.8e-25  Score=195.96  Aligned_cols=251  Identities=14%  Similarity=0.078  Sum_probs=203.1

Q ss_pred             HHHHHHHHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHH
Q 018408           86 FPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLI  165 (356)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~  165 (356)
                      +..++.+.+++....+....++...|.+.++.++  +..+.|++.+.+.+.|.++.++.|.++||.+.|+.+.+++++.+
T Consensus        28 ~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~l--sk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsa  105 (448)
T COG2271          28 IQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGL--SKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSA  105 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHH
Confidence            4557778888998888999999999999999998  67779999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhh--hccCCCCchh
Q 018408          166 LGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLG--IPAEDDPHWW  243 (356)
Q Consensus       166 i~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~--~~l~~~~~~w  243 (356)
                      +.+++++++++...+.++.++.|.++|...|.+...++.|+|+++||+..++++.+.++|+.+.+++.  +.+..+.+ |
T Consensus       106 i~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~-w  184 (448)
T COG2271         106 IVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGG-W  184 (448)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccc-h
Confidence            99999999999999999999999999999999999999999999999999999999999999999998  88877776 9


Q ss_pred             HHHHHHhHHHHHHHHHH-hhcccCChHHHHhcCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhc-CCCCccchhhhccc
Q 018408          244 RTMLYIASLPGFILALG-MQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKD-GSDLDSQWSELLEE  321 (356)
Q Consensus       244 ~~~~~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~  321 (356)
                      |..|++.++++++..+. ++..+++|.-.-        ...+++++++..+..     +++.+.+ ...++.-++.+|+|
T Consensus       185 ~~~f~~pgiiaiival~~~~~~rd~Pqs~G--------LP~ie~~~~d~~e~~-----~~~~~~~~ls~~~i~~~YVL~N  251 (448)
T COG2271         185 RAAFYFPGIIAIIVALILLFLLRDRPQSEG--------LPPIEEYRGDPLEIY-----EEEKENEGLTAWQIFVKYVLKN  251 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhCCCccccC--------CCCHHHhhcCchhhh-----hhhccCCCccHHHHHHHHHHcC
Confidence            99999988887776554 455777774211        111122222211110     1111111 11123456668999


Q ss_pred             CcchhhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 018408          322 PHSRVAFIGDGALASLLVGVTNFAGLRSEKY  352 (356)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (356)
                      |.+|.+.++..+...+-+++..|.+.++.-.
T Consensus       252 k~iW~la~a~vfvYivR~gi~dW~p~YL~e~  282 (448)
T COG2271         252 KLIWLLALANVFVYVVRYGINDWGPLYLSEV  282 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Confidence            9999999999887788888888777776543

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.92  E-value=4e-23  Score=195.07  Aligned_cols=204  Identities=25%  Similarity=0.530  Sum_probs=173.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhcchhhHHHHHHHh--------CCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHH
Q 018408           86 FPHVLIASMSNFLFGYHIGVMNGPIVSIAKEL--------GFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTF  157 (356)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~  157 (356)
                      .+.++.+.++.+..+++...+++..|.+.+.+        +.  +..+.+++.+.+.++..++++++|+++||+|||+++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~   88 (479)
T PRK10077         11 FSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESA--ANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSL   88 (479)
T ss_pred             HHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            44566777888999999999999999898887        44  566789999999999999999999999999999999


Q ss_pred             HHhHHHHHHHHHHHHHh------------hhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHH
Q 018408          158 QIDTIPLILGAIISAQA------------HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLG  225 (356)
Q Consensus       158 ~~~~~~~~i~~~~~~~~------------~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g  225 (356)
                      +++.++.+++.+..++.            +.+..++++|+++|++.|+..+....+++|++|+++||+++++.+.+..+|
T Consensus        89 ~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G  168 (479)
T PRK10077         89 KIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFG  168 (479)
T ss_pred             HHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHH
Confidence            99999998888877653            235677899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhccC--------CCCchhHHHHHHhHHHHHHHHHHhhcccCChHHHHhcCCHHHHHHHHHHHcCCcc
Q 018408          226 IITSLFLGIPAE--------DDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESE  292 (356)
Q Consensus       226 ~~~~~~i~~~l~--------~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~  292 (356)
                      .++++.++..+.        +..+ ||+.|++.+++.++..+..+++||+|+++..+++.+++++..++.++.++
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~g-Wr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~  242 (479)
T PRK10077        169 QLVVYFVNYFIARSGDASWLNTDG-WRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTL  242 (479)
T ss_pred             HHHHHHHHHHHhccCcccccccCC-hHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChh
Confidence            999887765432        3345 99999998888777777778899999998888888888777777665443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.92  E-value=1.8e-23  Score=193.30  Aligned_cols=182  Identities=16%  Similarity=0.191  Sum_probs=162.5

Q ss_pred             hHHHHHHHHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHH
Q 018408           85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL  164 (356)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~  164 (356)
                      +++.+..+.++++..+++....+...|.+.+++|+  +..+.+++.+++.+++.+++++.|+++||+|||+++..+.++.
T Consensus         6 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~--s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~   83 (412)
T TIGR02332         6 FRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGL--SATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLW   83 (412)
T ss_pred             hhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCC--CHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHH
Confidence            46667777888888889999999999999999999  5677999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCC------
Q 018408          165 ILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAED------  238 (356)
Q Consensus       165 ~i~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~------  238 (356)
                      +++.+++++++|++.+++.|++.|++.+...+....++.|++|+++|++++++++.+..+|..+++.+++.+.+      
T Consensus        84 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~  163 (412)
T TIGR02332        84 GIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMA  163 (412)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999887753      


Q ss_pred             CCchhHHHHHHhHHHHHHHH-HHhhcccCChH
Q 018408          239 DPHWWRTMLYIASLPGFILA-LGMQFTVESPR  269 (356)
Q Consensus       239 ~~~~w~~~~~~~~~~~~~~~-~~~~~~~e~p~  269 (356)
                      ..+ ||+.|++.+++.++.. +.++++||+|+
T Consensus       164 ~~g-wr~~f~~~~~~~l~~~~~~~~~~~~~p~  194 (412)
T TIGR02332       164 LKG-WQWLFLLEGFPSVILGVMTWFWLDDSPD  194 (412)
T ss_pred             ccc-hhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence            235 9999999877766554 45566888874

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00898 2A0119 cation transport protein

Probab=99.91  E-value=1.5e-23  Score=199.32  Aligned_cols=220  Identities=25%  Similarity=0.366  Sum_probs=178.4

Q ss_pred             hhHHHHHHHhCCC-CChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 018408          108 GPIVSIAKELGFE-GNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFL  186 (356)
Q Consensus       108 ~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l  186 (356)
                      ...+.+.+++|++ .+..+.++..+++.+|+.++.++.|+++||+|||++++++.++.+++.++.+++++++.++++|++
T Consensus       110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l  189 (505)
T TIGR00898       110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL  189 (505)
T ss_pred             cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            4456788899984 126678999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHHHHHHHhhcccC
Q 018408          187 VGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVE  266 (356)
Q Consensus       187 ~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e  266 (356)
                      .|++.++..+....++.|++|+++|+.+.++...+..+|.++++.++..+.+    ||+.+++.+++.++..+..+++||
T Consensus       190 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~----wr~~~~~~~i~~~~~~~~~~~~~e  265 (505)
T TIGR00898       190 VGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD----WRWLQLAVSLPTFLFFLLSWFVPE  265 (505)
T ss_pred             HHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999999999999999999999999998876643    999999998888887777788999


Q ss_pred             ChHHHHhcCCHHHHHHHHHHHcCCcch--HHHHHHHHHHHHhcCCCCccchhhhcccCcchhhHHHH
Q 018408          267 SPRWLCKGGMLNDAKAVIANLWGESEI--NKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGD  331 (356)
Q Consensus       267 ~p~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  331 (356)
                      +|+|+..+++.+++.+.+++..+.+..  .++..+.+...++..+.++.++++++++|.++..++..
T Consensus       266 sp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  332 (505)
T TIGR00898       266 SPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCL  332 (505)
T ss_pred             ChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHH
Confidence            999999999988888877665432211  11111111111111111135788999999888766655

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.91  E-value=1.8e-22  Score=189.98  Aligned_cols=206  Identities=36%  Similarity=0.680  Sum_probs=171.9

Q ss_pred             chhHHHHHHHHHHHHHHHhhhhcchhhHHHHHHHhCCC------CChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHH
Q 018408           83 LPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFE------GNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRT  156 (356)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~------~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~  156 (356)
                      ++.....+++.++.+..+++...+....+.+..+++.+      .+..+.+++.+++.++..++.+++|+++||+|||++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~  103 (481)
T TIGR00879        24 WKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKS  103 (481)
T ss_pred             HHHHHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHH
Confidence            33444455566666777888888888888888888775      446779999999999999999999999999999999


Q ss_pred             HHHhHHHHHHHHHHHHHhh---hHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhh
Q 018408          157 FQIDTIPLILGAIISAQAH---SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLG  233 (356)
Q Consensus       157 ~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~  233 (356)
                      ++++.++..++.+++.+..   +++.++++|++.|++.+...+....++.|++|+++|++++++++.+..+|..+++.++
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~  183 (481)
T TIGR00879       104 LLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG  183 (481)
T ss_pred             HHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            9999999999988886543   4558899999999999999999999999999999999999999999999999999998


Q ss_pred             ---hccCCCCchhHHHHHHhHHHHHHHHHHhhcccCChHHHHhcCCHHHHHHHHHHHcC
Q 018408          234 ---IPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWG  289 (356)
Q Consensus       234 ---~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~  289 (356)
                         ....+..+ ||+.|++.++..++.++..+++||+|++...+++.+++.+..++.++
T Consensus       184 ~~~~~~~~~~~-w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  241 (481)
T TIGR00879       184 SGKVSLNNTLG-WRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRG  241 (481)
T ss_pred             HHhhcCCCCcc-HHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhC
Confidence               66656666 99999997777777777778899999887777766666655555443

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.91  E-value=3.5e-22  Score=188.88  Aligned_cols=184  Identities=20%  Similarity=0.257  Sum_probs=152.2

Q ss_pred             HHHHHHHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhH--HHH--HHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHH
Q 018408           87 PHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPIL--EGL--VVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTI  162 (356)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~--~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~  162 (356)
                      +.++...++.++.+|+...++...|.+.++++.+.++..  .+.  +.++..+++.+|++++|+++||+|||+++.++.+
T Consensus        16 ~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~   95 (490)
T PRK10642         16 KAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIV   95 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence            456667788999999999999999999999865433321  111  2467788999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhHHH--------HHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhh
Q 018408          163 PLILGAIISAQAHSLDE--------MLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGI  234 (356)
Q Consensus       163 ~~~i~~~~~~~~~~~~~--------~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~  234 (356)
                      +++++++++++++|+..        ++++|+++|++.|+.++....+++|++|+++||+..++...+..+|..+++.+..
T Consensus        96 l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~  175 (490)
T PRK10642         96 IMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVV  175 (490)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999864        7889999999999999999999999999999999999998888888877775543


Q ss_pred             cc----C----CCCchhHHHHHHhHHHHHHHHHHhhcccCChHHH
Q 018408          235 PA----E----DDPHWWRTMLYIASLPGFILALGMQFTVESPRWL  271 (356)
Q Consensus       235 ~l----~----~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~p~~~  271 (356)
                      .+    .    ...+ ||+.|++.+++.++..++..++||+|++.
T Consensus       176 ~~~~~~~~~~~~~~g-WR~~f~i~~~~~l~~~~~~~~~~esp~~~  219 (490)
T PRK10642        176 LISTIVGEANFLDWG-WRIPFFIALPLGIIGLYLRHALEETPAFQ  219 (490)
T ss_pred             HHHHhcCHHHhcCcc-HHHHHHHHHHHHHHHHHHHHcCCCChhHH
Confidence            32    1    2446 99999998776666666666789998865

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.91  E-value=2.8e-22  Score=177.97  Aligned_cols=178  Identities=22%  Similarity=0.266  Sum_probs=166.2

Q ss_pred             hHHHHHHHHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHH
Q 018408           85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL  164 (356)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~  164 (356)
                      .+..++.+.++.|..+.........+|.+.+++|.  +....|++.+.|.++..++.++...+.||+.||++++..+.++
T Consensus        11 ~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~v--s~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lF   88 (394)
T COG2814          11 MWLALLALALAAFAIGTTEFVPVGLLPPIAADLGV--SEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALF   88 (394)
T ss_pred             chHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence            45567888888899999999999999999999999  5666999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhH
Q 018408          165 ILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWR  244 (356)
Q Consensus       165 ~i~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~  244 (356)
                      +++++++++++|++.++++|++.|+..|..++....+..++.|+++|++++++...+..++..+|.+++.++.+..| ||
T Consensus        89 i~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~G-WR  167 (394)
T COG2814          89 IVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFG-WR  167 (394)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhh-HH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             HHHHHhHHHHHHHHHH-hhccc
Q 018408          245 TMLYIASLPGFILALG-MQFTV  265 (356)
Q Consensus       245 ~~~~~~~~~~~~~~~~-~~~~~  265 (356)
                      +.|+..+.+.++..+. +..+|
T Consensus       168 ~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         168 ATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCC
Confidence            9999988888877654 45577

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.91  E-value=1.1e-22  Score=184.59  Aligned_cols=214  Identities=13%  Similarity=0.014  Sum_probs=167.4

Q ss_pred             hhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhhhHHHHHH
Q 018408          103 IGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLW  182 (356)
Q Consensus       103 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~  182 (356)
                      ...+.+.+|.+.+++|+  +..+.+++.+.+.+++.+++++.|+++||+|||++++.+......+.+.....+++..+++
T Consensus         7 ~~~~~~~lp~i~~~~~~--s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~   84 (368)
T TIGR00903         7 WVTFSPVLSLVAEDIDV--SKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLA   84 (368)
T ss_pred             HHHHHhhHHHHHHHhCc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            34567788999999999  6777999999999999999999999999999998876555544444333333378999999


Q ss_pred             HHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHHHHH-HHh
Q 018408          183 GRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILA-LGM  261 (356)
Q Consensus       183 ~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~-~~~  261 (356)
                      +|++.|++.+. .......++|++|+++|++++++.+.+..+|..+++.++..+.++.+ ||+.|++.+++.++.. +..
T Consensus        85 ~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~g-Wr~~f~~~~~l~~~~~~~~~  162 (368)
T TIGR00903        85 CQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGG-LQLLIIPIAAVAAAGIILVL  162 (368)
T ss_pred             HHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-hHHHHHHHHHHHHHHHHHHH
Confidence            99999999986 45556667999999999999999999999999999999999988777 9999999766665554 455


Q ss_pred             hcccCChHHHHhcCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCccchhhhcccCcchhhHHHHHHHHHHHHHH
Q 018408          262 QFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGDGALASLLVGV  341 (356)
Q Consensus       262 ~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  341 (356)
                      +++||+|++.   ++             ..+.+       +.        ...+++++++|.+|...+..........++
T Consensus       163 ~~lp~~p~~~---~~-------------~~~~~-------~~--------~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~  211 (368)
T TIGR00903       163 AALPALPFQA---AE-------------GFGFK-------DA--------VKEFGALAGRKDLWIIGAILGFGVALFDNL  211 (368)
T ss_pred             HHcCCCCCCC---CC-------------CcchH-------HH--------HHHHHHHHcChhHHHHHHHHHHHHHHHHHH
Confidence            6689887431   00             00000       00        013678899999999988888888888888


Q ss_pred             HHHHHhhhhh
Q 018408          342 TNFAGLRSEK  351 (356)
Q Consensus       342 ~~~~~~~~~~  351 (356)
                      ..|+++++..
T Consensus       212 ~~wlp~~L~~  221 (368)
T TIGR00903       212 AIWLEAALRP  221 (368)
T ss_pred             HHHHHHHHHH
Confidence            8888888753

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.90  E-value=7.9e-22  Score=183.64  Aligned_cols=183  Identities=17%  Similarity=0.154  Sum_probs=145.4

Q ss_pred             hHHHHHHHHHHHHHHHhhhhcchhhHHHHHHHhCCC-CChhHHHH---HHHHHHHHHHHHHHhHHhhhhhhchhHHHHHh
Q 018408           85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFE-GNPILEGL---VVSIFIAGAFVGSISSGSLADKLGCRRTFQID  160 (356)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~---~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~  160 (356)
                      +++.+....++.+...++...++...|.+.++++.+ .+..+.+.   +.+...++..+|++++|+++||+|||+++.++
T Consensus        20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~   99 (432)
T PRK10406         20 RIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLIS   99 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            444566667788889999999999899999998532 12332333   33444555569999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhHH--------HHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHh
Q 018408          161 TIPLILGAIISAQAHSLD--------EMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFL  232 (356)
Q Consensus       161 ~~~~~i~~~~~~~~~~~~--------~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i  232 (356)
                      .++++++++++++++++.        .++++|+++|++.|+.++....+++|++|+++||++.++.+.+..+|.++++.+
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~  179 (432)
T PRK10406        100 VCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLV  179 (432)
T ss_pred             HHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999888764        588899999999999999999999999999999999999888888887777765


Q ss_pred             hhccC--------CCCchhHHHHHHhHHHHHHHHHHhhcccCCh
Q 018408          233 GIPAE--------DDPHWWRTMLYIASLPGFILALGMQFTVESP  268 (356)
Q Consensus       233 ~~~l~--------~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~p  268 (356)
                      ...+.        ...+ ||+.|++.+++.++..+.....||+|
T Consensus       180 ~~~~~~~~~~~~~~~~g-Wr~~F~i~~~~~ll~~~~~~~~~e~~  222 (432)
T PRK10406        180 VVVLQQTLEDAELREWG-WRIPFALGAVLAVVALWLRRQLDETS  222 (432)
T ss_pred             HHHHHHhCCHHHHhccc-hHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            44332        1345 99999998887776655555567765

>PRK03545 putative arabinose transporter; Provisional

Probab=99.90  E-value=8e-22  Score=181.28  Aligned_cols=180  Identities=19%  Similarity=0.211  Sum_probs=153.9

Q ss_pred             hHHHHHHHHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHH
Q 018408           85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL  164 (356)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~  164 (356)
                      ++..++.+.++.+..........+.+|.+.+++|.  +..+.+++.+.+.+++.++.++.|+++||+|||+++..+.++.
T Consensus         7 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~--s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   84 (390)
T PRK03545          7 AWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHM--QTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLF   84 (390)
T ss_pred             chHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence            44445555555555545544555667899999999  6677999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhH
Q 018408          165 ILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWR  244 (356)
Q Consensus       165 ~i~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~  244 (356)
                      +++++++++++|++.++++|+++|++.+...+....++.|++|+++|++++++...+..+|..++|.+++.+.+..+ ||
T Consensus        85 ~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~g-w~  163 (390)
T PRK03545         85 IASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLG-WR  163 (390)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhc-HH
Confidence            99999999999999999999999999998889999999999999999999999999999999999999998888777 99


Q ss_pred             HHHHHhHHHHHHHHHH-hhcccCC
Q 018408          245 TMLYIASLPGFILALG-MQFTVES  267 (356)
Q Consensus       245 ~~~~~~~~~~~~~~~~-~~~~~e~  267 (356)
                      +.|++.+++.++..+. ..++||.
T Consensus       164 ~~f~~~~~~~~l~~~~~~~~~~~~  187 (390)
T PRK03545        164 TTFLAIGGGALITLLLLIKLLPLL  187 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCC
Confidence            9999988776665543 3345654

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.90  E-value=2.9e-21  Score=178.18  Aligned_cols=186  Identities=17%  Similarity=0.256  Sum_probs=165.4

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHH
Q 018408           84 PAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIP  163 (356)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~  163 (356)
                      .+++.+..+.++++..+++....+...|.+.+++|.  +..+.+++.+++.++..++.++.|+++||+|||++++++.++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~   86 (405)
T TIGR00891         9 AQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGL--TTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVL   86 (405)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            456667788888899999999999999999999999  566699999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCc-h
Q 018408          164 LILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPH-W  242 (356)
Q Consensus       164 ~~i~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~-~  242 (356)
                      .+++.++++++++++.+++.|++.|++.+...+....++.|++|+++|++++++.+.+..+|..+++.+++.+.+..+ +
T Consensus        87 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~  166 (405)
T TIGR00891        87 FSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDG  166 (405)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999888776532 3


Q ss_pred             hHHHHHHhHHHHHHHHHHhhcccCChHHH
Q 018408          243 WRTMLYIASLPGFILALGMQFTVESPRWL  271 (356)
Q Consensus       243 w~~~~~~~~~~~~~~~~~~~~~~e~p~~~  271 (356)
                      ||+.|++.++..++..+....+||++++.
T Consensus       167 w~~~f~~~~~~~~~~~~~~~~~~~~~~~~  195 (405)
T TIGR00891       167 WRALFFISILPIIFALWLRKNIPEAEDWK  195 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCChhHH
Confidence            99999987777666666666788886543

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.89  E-value=9.5e-22  Score=183.19  Aligned_cols=181  Identities=15%  Similarity=0.121  Sum_probs=157.7

Q ss_pred             HHHHHHHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHH
Q 018408           87 PHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLIL  166 (356)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i  166 (356)
                      ...+...++++...++...++..+|.+.+++|+  +..+.+++.+.+.+++.++.++.|+++||+|||+++.++.++.++
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~  100 (434)
T PRK11663         23 HILITMYLGYALFYFTRKSFNAAMPEMLADLGL--SRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGI  100 (434)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHH
Confidence            444555666666667667778888999999999  667799999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHH
Q 018408          167 GAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTM  246 (356)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~  246 (356)
                      +.++++++++++.+++.|++.|++.|...+....++.|++|+++|++++++++.+..+|..+++.+.+.+.+..+ ||+.
T Consensus       101 ~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-w~~~  179 (434)
T PRK11663        101 INILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYG-WRYG  179 (434)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-HHHH
Confidence            999999999999999999999999998889999999999999999999999999999999999999998888777 9999


Q ss_pred             HHHhHHHHHHHH-HHhhcccCChHH
Q 018408          247 LYIASLPGFILA-LGMQFTVESPRW  270 (356)
Q Consensus       247 ~~~~~~~~~~~~-~~~~~~~e~p~~  270 (356)
                      |++.+++.++.. +..++++|+|+.
T Consensus       180 f~~~~i~~~~~~~~~~~~~~~~p~~  204 (434)
T PRK11663        180 MMIAGIIAIVVGLFLCWRLRDKPQA  204 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCHhh
Confidence            998777665443 344567887643

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.89  E-value=2.1e-21  Score=180.59  Aligned_cols=180  Identities=18%  Similarity=0.275  Sum_probs=157.5

Q ss_pred             HHHHHHHHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHH
Q 018408           86 FPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLI  165 (356)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~  165 (356)
                      ++.++.+.++++..+++.....+..|.+.+++|.  ++.+.+++.+++.+++.++.++.|+++||+|||+++.++.++.+
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~   94 (426)
T PRK12307         17 KNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGL--TDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYS   94 (426)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence            4456677788888888888888889999999999  56668999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHH
Q 018408          166 LGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRT  245 (356)
Q Consensus       166 i~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~  245 (356)
                      ++.++.+++++++.++++|++.|++.+..++....++.|++|+++|++++++...+..+|.++++.+.+.+.+..+ ||+
T Consensus        95 ~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~-w~~  173 (426)
T PRK12307         95 VGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYG-WRA  173 (426)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCC-HHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999888888777 999


Q ss_pred             HHHHhHHHHHHHHHHhhcccCCh
Q 018408          246 MLYIASLPGFILALGMQFTVESP  268 (356)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~e~p  268 (356)
                      .|++.++..++........||++
T Consensus       174 ~f~i~~~~~~~~~~~~~~~p~~~  196 (426)
T PRK12307        174 AFFVGLLPVLLVIYIRARAPESK  196 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCh
Confidence            99886554444333333355654

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.89  E-value=4.5e-21  Score=176.31  Aligned_cols=180  Identities=14%  Similarity=0.144  Sum_probs=152.4

Q ss_pred             hHHHHHHHHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHH
Q 018408           85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL  164 (356)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~  164 (356)
                      .|+.++.+.++.+..........+.+|.+.+++|.  +..+.++..+.+.++..++.++.|+++||+|||++++.+.++.
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~   95 (394)
T PRK10213         18 NWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGI--SEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLL   95 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHH
Confidence            34444555555444444444555567889999999  5667899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhH
Q 018408          165 ILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWR  244 (356)
Q Consensus       165 ~i~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~  244 (356)
                      +++.+++.++++++.++++|++.|++.+...+....++.|++|+++|++++++...+.++|..++|.+++.+.+..+ ||
T Consensus        96 ~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~g-w~  174 (394)
T PRK10213         96 TLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIG-WR  174 (394)
T ss_pred             HHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-HH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988888 99


Q ss_pred             HHHHHhHHHHHHHHHHh-hcccCC
Q 018408          245 TMLYIASLPGFILALGM-QFTVES  267 (356)
Q Consensus       245 ~~~~~~~~~~~~~~~~~-~~~~e~  267 (356)
                      +.|++.+++.++..+.. ...||+
T Consensus       175 ~~f~~~~~l~~~~~l~~~~~~p~~  198 (394)
T PRK10213        175 NVFNAAAVMGVLCIFWIIKSLPSL  198 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCC
Confidence            99998776666544333 335654

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.89  E-value=3.7e-21  Score=182.03  Aligned_cols=182  Identities=12%  Similarity=0.103  Sum_probs=161.9

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHH
Q 018408           84 PAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIP  163 (356)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~  163 (356)
                      +++..+..++++.+....+..+.+..+|.+.+++|.  +..+.+|+.+.+.+++.++.+++|+++||+|||++++++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~--s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~   80 (495)
T PRK14995          3 RQWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGA--SGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTL   80 (495)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            345677888899999999999999999999999998  555689999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhc-CCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCch
Q 018408          164 LILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVA-PTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHW  242 (356)
Q Consensus       164 ~~i~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~  242 (356)
                      .+++++++++++|++.++++|+++|++.+...+.....+.+.+ |+++|+++++++.....+|..++|.+++.+.++.+ 
T Consensus        81 ~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~g-  159 (495)
T PRK14995         81 FGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFY-  159 (495)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-
Confidence            9999999999999999999999999999998888877777776 67899999999999999999999999999999888 


Q ss_pred             hHHHHHHhHHHHHHHHH-HhhcccCCh
Q 018408          243 WRTMLYIASLPGFILAL-GMQFTVESP  268 (356)
Q Consensus       243 w~~~~~~~~~~~~~~~~-~~~~~~e~p  268 (356)
                      |||.|++...+.++.++ ..+++|+.+
T Consensus       160 wr~~f~i~~~~~~~~~~l~~~~l~~~~  186 (495)
T PRK14995        160 WGSVFLINVPIVLVVMGLTARYVPRQA  186 (495)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            99999997766665543 445567654

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.89  E-value=3.3e-21  Score=178.25  Aligned_cols=174  Identities=17%  Similarity=0.250  Sum_probs=151.4

Q ss_pred             HHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHH
Q 018408           92 ASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIIS  171 (356)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~  171 (356)
                      +.+..+........+.+.+|.+.+++|.  +....++..+++.+++.++++++|+++||+|||++++.+.++.+++.+++
T Consensus        21 ~~~~~~~~~~~~~~~~p~l~~i~~~~~~--~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~   98 (413)
T PRK15403         21 LILYDFAAYLTTDLIQPGIINVVRDFNA--DVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAAT   98 (413)
T ss_pred             HHHHHHHHHHHHHhhccCHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHH
Confidence            3444455566667788888999999998  56668899999999999999999999999999999999999999999999


Q ss_pred             HHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhH
Q 018408          172 AQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIAS  251 (356)
Q Consensus       172 ~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~  251 (356)
                      +++++++.++++|+++|++.+...+....++.|++|+++|++.+++...+..+|..++|.+++.+.++.+ ||+.|++.+
T Consensus        99 ~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~g-w~~~f~~~~  177 (413)
T PRK15403         99 LFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVH-WKVLFAIIA  177 (413)
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHH
Confidence            9999999999999999999887777778889999999999999999999999999999999998887777 999999988


Q ss_pred             HHHHHHHHH-hhcccCCh
Q 018408          252 LPGFILALG-MQFTVESP  268 (356)
Q Consensus       252 ~~~~~~~~~-~~~~~e~p  268 (356)
                      +..++..+. .+++||++
T Consensus       178 ~~~~i~~~~~~~~lp~~~  195 (413)
T PRK15403        178 VMGLIAFVGLLLAMPETV  195 (413)
T ss_pred             HHHHHHHHHHHHhCCCCc
Confidence            777766554 44578764

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.88  E-value=1e-21  Score=187.29  Aligned_cols=206  Identities=23%  Similarity=0.256  Sum_probs=168.0

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHH
Q 018408          122 NPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIY  201 (356)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~  201 (356)
                      +.....+..+++.+|..+|++++|+++||+|||+++++++++..++.++.++++|++.+++.|++.|++.++.......+
T Consensus       116 ~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~  195 (521)
T KOG0255|consen  116 SSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGL  195 (521)
T ss_pred             cHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhh
Confidence            55567888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHHHHHHHhhcccCChHHHHhcCCHHHHH
Q 018408          202 ISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAK  281 (356)
Q Consensus       202 ~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~  281 (356)
                      +.|++++++|+.++.+ ......++.+++.+++++..  + ||+.+++..++.++.++.+++.||+|+|+..+++.+++.
T Consensus       196 ~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~-Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~a~  271 (521)
T KOG0255|consen  196 VAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--D-WRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGRIDEAI  271 (521)
T ss_pred             heeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--h-HHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCchHHHH
Confidence            9999999999999999 77777777777777777766  4 999999999999888877777779999999999999999


Q ss_pred             HHHHHHcCCc----chHHHHHHH-HHHHHh-cCCCCccchhhhcccCcchhhHHHH
Q 018408          282 AVIANLWGES----EINKAIEEF-QLVIKK-DGSDLDSQWSELLEEPHSRVAFIGD  331 (356)
Q Consensus       282 ~~~~~~~~~~----~~~~~~~~~-~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~  331 (356)
                      +.+++....+    +.++..+.. .....+ ...+.+..+.++++.|+++..++..
T Consensus       272 ~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~  327 (521)
T KOG0255|consen  272 KILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYL  327 (521)
T ss_pred             HHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHH
Confidence            9988864321    222222211 111111 1122236799999999655544444

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.88  E-value=6.2e-26  Score=212.57  Aligned_cols=231  Identities=34%  Similarity=0.600  Sum_probs=185.4

Q ss_pred             HHHHHHHHHhhhhcchhhHHHHH--HHhCCCC-------ChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHH
Q 018408           92 ASMSNFLFGYHIGVMNGPIVSIA--KELGFEG-------NPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTI  162 (356)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~-------~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~  162 (356)
                      +.++.+..+|+...++...+...  ..++.+.       ++...++..+...+|..+|++++|+++||+|||+.++++.+
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~   84 (451)
T PF00083_consen    5 ASLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISAL   84 (451)
T ss_pred             eHHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhccccccccccccccccccccccccc
Confidence            45556788888877766654433  2222221       12356889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhh---hHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCC
Q 018408          163 PLILGAIISAQAH---SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDD  239 (356)
Q Consensus       163 ~~~i~~~~~~~~~---~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~  239 (356)
                      +..++.++.++++   ++..++++|++.|++.|+..+....++.|..|+++|++..++.+.+..+|.+++..++..+...
T Consensus        85 ~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~  164 (451)
T PF00083_consen   85 LMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYY  164 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999999999   9999999999999999999999999999999999999999999999999999888876655322


Q ss_pred             C--chhHHHHHHhHHHHHHHHHHhhcccCChHHHHhcCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCccchhh
Q 018408          240 P--HWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSE  317 (356)
Q Consensus       240 ~--~~w~~~~~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (356)
                      .  ..||..+++.+++.++..+..+++||||+|+..+++.+||++.++++++++..+++.++..++.++.++. +.++++
T Consensus       165 ~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  243 (451)
T PF00083_consen  165 SDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQES-KASWRD  243 (451)
T ss_pred             cccccccccccccccccccccccccccccccceeccccccccccccccccccccccccccccccccccccccc-ceeeee
Confidence            1  2399999999999888888888899999999999999999999999777654444443333333322222 267888


Q ss_pred             hcccCc
Q 018408          318 LLEEPH  323 (356)
Q Consensus       318 ~l~~~~  323 (356)
                      +++++.
T Consensus       244 l~~~~~  249 (451)
T PF00083_consen  244 LFRNKK  249 (451)
T ss_pred             cccccc
Confidence            888865

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.88  E-value=8.8e-21  Score=178.46  Aligned_cols=176  Identities=14%  Similarity=0.106  Sum_probs=138.8

Q ss_pred             HHHHHHHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHH
Q 018408           87 PHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLIL  166 (356)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i  166 (356)
                      +.+...++..+...+......+..|.+.+++|+  +..+.+++.+.+.+++.++.++.|+++||+|||+++..+.++.++
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl--s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~  113 (476)
T PLN00028         36 RAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNL--TKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAP  113 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence            334444455555555555667778899999999  566688999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccC----C----
Q 018408          167 GAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAE----D----  238 (356)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~----~----  238 (356)
                      +.++.++++++..++++|++.|++.+... ....+++|++|+++||+++++.+.+..+|..+++.+.+.+.    +    
T Consensus       114 ~~~~~~~~~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~  192 (476)
T PLN00028        114 AVFCMSLVSSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAP  192 (476)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            99999999999999999999999887654 45567899999999999999987776667666655443321    1    


Q ss_pred             -CCchhHHHHHHhHHHHHHHHHHhhcccC
Q 018408          239 -DPHWWRTMLYIASLPGFILALGMQFTVE  266 (356)
Q Consensus       239 -~~~~w~~~~~~~~~~~~~~~~~~~~~~e  266 (356)
                       ..+ ||+.|++.+++.++..+..+++++
T Consensus       193 ~~~g-Wr~~f~i~g~l~l~~~l~~~~~~~  220 (476)
T PLN00028        193 SFTA-WRIAFFVPGLLHIIMGILVLTLGQ  220 (476)
T ss_pred             chhh-hHHHHHHHHHHHHHHHHHHHHHcC
Confidence             135 999999988877766655555443

>TIGR00895 2A0115 benzoate transport

Probab=99.88  E-value=2.2e-21  Score=178.37  Aligned_cols=186  Identities=26%  Similarity=0.423  Sum_probs=160.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHH
Q 018408           86 FPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLI  165 (356)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~  165 (356)
                      ++.+..+.+..+..++.........|.+.+++|.  +..+.+++.+.+.++..++.++.|+++||+|||+.+..+.++.+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~   93 (398)
T TIGR00895        16 WRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGL--DPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFS   93 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCC--CHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHH
Confidence            4445555566677777777777888999999998  56678999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHH
Q 018408          166 LGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRT  245 (356)
Q Consensus       166 i~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~  245 (356)
                      ++.++..+.++++.+++.+++.|++.+...+....++.|++|+++|++++++.+.+..+|..+++.+++.+.+..+ |++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-~~~  172 (398)
T TIGR00895        94 VFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFG-WRS  172 (398)
T ss_pred             HHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhccc-cee
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999888877 999


Q ss_pred             HHHHhHHHHHH-HHHHhhcccCChHHHHhc
Q 018408          246 MLYIASLPGFI-LALGMQFTVESPRWLCKG  274 (356)
Q Consensus       246 ~~~~~~~~~~~-~~~~~~~~~e~p~~~~~~  274 (356)
                      .+++.++..++ ..+...++||++++..++
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (398)
T TIGR00895       173 LFYVGGIAPLLLLLLLMRFLPESIDFLVSK  202 (398)
T ss_pred             ehhhhhhHHHHHHHHHHHhCCCCChHHHhc
Confidence            99887544444 445556688887665443

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.88  E-value=2.2e-23  Score=184.62  Aligned_cols=183  Identities=18%  Similarity=0.241  Sum_probs=167.1

Q ss_pred             chhHHHHHHHHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHH
Q 018408           83 LPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTI  162 (356)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~  162 (356)
                      ....+.+.++++...+...+.+.+....+.+++.+|++  +...|++.+.+.+++.++++++|+++||++||+++.+|..
T Consensus        29 ~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~--~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~  106 (493)
T KOG1330|consen   29 KSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNIS--DSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIF  106 (493)
T ss_pred             ccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCC--chhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHH
Confidence            34456677788888888899888888899999999995  4459999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCch
Q 018408          163 PLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHW  242 (356)
Q Consensus       163 ~~~i~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~  242 (356)
                      ++.++.+..+++..+++++++|.+.|+|.+.+.+..+.+++|.+|..+|++.+++++++..+|..+|.+++..+.+..++
T Consensus       107 iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~  186 (493)
T KOG1330|consen  107 IWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFW  186 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             hHHHHHHhHHHHHHHHHHhhc-ccCC
Q 018408          243 WRTMLYIASLPGFILALGMQF-TVES  267 (356)
Q Consensus       243 w~~~~~~~~~~~~~~~~~~~~-~~e~  267 (356)
                      |||.|+..+++.++..++.++ .+|.
T Consensus       187 Wr~af~~~avl~vi~~~L~~~f~~eP  212 (493)
T KOG1330|consen  187 WRWAFRGSAVLGVIVGLLVFLFVREP  212 (493)
T ss_pred             eEEEEEeehHHHHHHHHHHHhhccCc
Confidence            999999999988887766544 5554

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.88  E-value=2.3e-21  Score=177.77  Aligned_cols=168  Identities=19%  Similarity=0.174  Sum_probs=148.9

Q ss_pred             HHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhhhH
Q 018408           98 LFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSL  177 (356)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~  177 (356)
                      ...++...++...|.+.+++|.  +..+.+++.+++.++..++.++.|+++||+|||+++.++.++.+++.+++++++++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~g~--s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~   82 (399)
T TIGR00893         5 INYLDRANLSFAAPMLQEDLGL--SAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAY   82 (399)
T ss_pred             HHHHHHHhhhHhHHHHHHhhCC--ChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCH
Confidence            3445556677778899999999  56669999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHHHH
Q 018408          178 DEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFIL  257 (356)
Q Consensus       178 ~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~  257 (356)
                      +.++++|++.|++.+...+....++.|++|+++|++++++.+....+|..+++.+++.+.+..+ |++.|++.++..++.
T Consensus        83 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~  161 (399)
T TIGR00893        83 VSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFS-WQWAFIIEGVLGIIW  161 (399)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCC-chHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999998888877 999999887776665


Q ss_pred             HHHh-hcccCCh
Q 018408          258 ALGM-QFTVESP  268 (356)
Q Consensus       258 ~~~~-~~~~e~p  268 (356)
                      .+.. ++.||+|
T Consensus       162 ~~~~~~~~~~~~  173 (399)
T TIGR00893       162 GVLWLKFIPDPP  173 (399)
T ss_pred             HHHhhheecCCC
Confidence            5443 4456654

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.87  E-value=1.2e-20  Score=162.07  Aligned_cols=199  Identities=19%  Similarity=0.221  Sum_probs=176.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHH
Q 018408           86 FPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLI  165 (356)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~  165 (356)
                      +.....+.++++...+.....+...|.+.+.+|.  +..+..+++...+.|+.+++..+|.++|++|||+.+.+.....+
T Consensus        77 ~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~--s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~  154 (528)
T KOG0253|consen   77 WYLFFVAGMGWMADAMEMMLLSLILPALDEVWGP--SEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTG  154 (528)
T ss_pred             hhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhch--hhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHH
Confidence            4455666777777766666666677888888887  66778999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHH
Q 018408          166 LGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRT  245 (356)
Q Consensus       166 i~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~  245 (356)
                      +..++.+.++|+..+.+.|.+.|+|.|+ .+...++-.|..|..+|+..+-+. ..+.+|.++...++.....+.| |||
T Consensus       155 v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~g-wr~  231 (528)
T KOG0253|consen  155 VFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFG-WRY  231 (528)
T ss_pred             HHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhh-HHH
Confidence            9999999999999999999999999999 788888889999999999888777 8999999999999988888888 999


Q ss_pred             HHHHhHHHHHHHHHHhhcccCChHHHHhcCCHHHHHHHHHHHcC
Q 018408          246 MLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWG  289 (356)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~  289 (356)
                      .......+..+.++..+++||+||++..+++.++|.+.++++..
T Consensus       232 ~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiAr  275 (528)
T KOG0253|consen  232 LLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIAR  275 (528)
T ss_pred             HHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHH
Confidence            98888888888888888999999999999999999998887654

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.87  E-value=5.8e-20  Score=169.84  Aligned_cols=184  Identities=23%  Similarity=0.356  Sum_probs=163.0

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHH
Q 018408           84 PAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIP  163 (356)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~  163 (356)
                      +++..++++.+..+..+++....+...|.+.+++|.  ++.+.+++.+.+.++..++.++.|+++||+|||+++..+.++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   89 (406)
T PRK11551         12 RLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGL--DVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVAL   89 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHH
Confidence            455667777788888899998899999999999998  677799999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchh
Q 018408          164 LILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWW  243 (356)
Q Consensus       164 ~~i~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w  243 (356)
                      ..++.+++.++++++.+++.|++.|++.+...+....++.|++|+++|++++++.+.+..+|..+++.++..+.+..+ |
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~  168 (406)
T PRK11551         90 FGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAA-W  168 (406)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC-H
Confidence            999999999999999999999999999999999999999999999999999999999999999999999888877777 9


Q ss_pred             HHHHHHhHHHHHHHHH-HhhcccCChHH
Q 018408          244 RTMLYIASLPGFILAL-GMQFTVESPRW  270 (356)
Q Consensus       244 ~~~~~~~~~~~~~~~~-~~~~~~e~p~~  270 (356)
                      ++.|++.++..++..+ ...++||+|++
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~  196 (406)
T PRK11551        169 RHIFYVGGVGPLLLVPLLMRWLPESRAF  196 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCChhH
Confidence            9999987766555443 44567888754

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.87  E-value=3.9e-21  Score=180.73  Aligned_cols=180  Identities=15%  Similarity=0.099  Sum_probs=149.1

Q ss_pred             HHHHHHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHH
Q 018408           88 HVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILG  167 (356)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~  167 (356)
                      .+..+.++++....+...++...|.+.+++|+  +..+.|++.+.+.+++.+++++.|+++||+|||+++.++.++++++
T Consensus        30 i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~--s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~  107 (467)
T PRK09556         30 SYLVVFIGYLTMYLIRKNFKAAQNDMISTYGL--STTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAIC  107 (467)
T ss_pred             HHHHHHHHHHHHHHHhcChhhhhHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHH
Confidence            34455666666666788888889999999999  5677999999999999999999999999999999999888888877


Q ss_pred             HHHHHH-----hhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCC--
Q 018408          168 AIISAQ-----AHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP--  240 (356)
Q Consensus       168 ~~~~~~-----~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~--  240 (356)
                      .++.++     +++++.++++|++.|++.+...+....+++|++|+++||+++|+++.+..+|.++++.+...+....  
T Consensus       108 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~  187 (467)
T PRK09556        108 MLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFD  187 (467)
T ss_pred             HHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhcc
Confidence            776654     5899999999999999999999999999999999999999999999999999999998876554432  


Q ss_pred             chhHHHHHHhHHHHHHHHH-HhhcccCChH
Q 018408          241 HWWRTMLYIASLPGFILAL-GMQFTVESPR  269 (356)
Q Consensus       241 ~~w~~~~~~~~~~~~~~~~-~~~~~~e~p~  269 (356)
                      ++|+..|.+.+++.++..+ .+++.++.|+
T Consensus       188 ~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~  217 (467)
T PRK09556        188 GHVIGMFIFPSIIALIIGFIGLRYGSDSPE  217 (467)
T ss_pred             CcchhHHHHHHHHHHHHHHHHHHhCCCChh
Confidence            2389888887766655544 3444566653

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.87  E-value=4.2e-20  Score=174.73  Aligned_cols=178  Identities=21%  Similarity=0.288  Sum_probs=158.8

Q ss_pred             HHHHHHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHH
Q 018408           88 HVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILG  167 (356)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~  167 (356)
                      .+..++++.+...++....+..+|.+.+++|.  +..+.+++.+.+.++..++.++.|+++||+|||++++++.++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~--s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~   80 (485)
T TIGR00711         3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGS--SLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLG   80 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--ChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            34566677788888888889999999999998  4556899999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHH
Q 018408          168 AIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTML  247 (356)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~  247 (356)
                      .+++++++++..++++|+++|++.+...+....++.|++|+++|+++++++..+..+|..++|.+++.+.++.+ ||+.|
T Consensus        81 ~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-w~~~f  159 (485)
T TIGR00711        81 SLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYH-WRWIF  159 (485)
T ss_pred             HHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcC-ceehh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998888 99999


Q ss_pred             HHhHHHHHHHHHH-hhcccCCh
Q 018408          248 YIASLPGFILALG-MQFTVESP  268 (356)
Q Consensus       248 ~~~~~~~~~~~~~-~~~~~e~p  268 (356)
                      ++.+++.++..+. .++.||++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~  181 (485)
T TIGR00711       160 LINVPIGIIVVVVAFFILPRDK  181 (485)
T ss_pred             hhhhHHHHHHHHHHHHHcCCcc
Confidence            9887766655543 34466643

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.87  E-value=1.8e-21  Score=177.73  Aligned_cols=170  Identities=15%  Similarity=0.105  Sum_probs=147.6

Q ss_pred             HHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhh
Q 018408           96 NFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAH  175 (356)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~  175 (356)
                      ++...++...++...|.+.+++|.  +..+.+++.+++.+++.++.++.|+++||+|||+++.++.++.+++.++.++++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~g~--s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~   81 (379)
T TIGR00881         4 YAAYYLVRKNFALAMPYLVEEIGL--SKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFST   81 (379)
T ss_pred             hhHHHHhHHhhhhhhHHHHHHhCC--CHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhh
Confidence            445556667777888999999999  566699999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHH-HhhhccCCCCchhHHHHHHhHHHH
Q 018408          176 SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSL-FLGIPAEDDPHWWRTMLYIASLPG  254 (356)
Q Consensus       176 ~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~-~i~~~l~~~~~~w~~~~~~~~~~~  254 (356)
                      +++.+++.|++.|++.+...+....++.|++|+++|++++++.+.+..+|..+++ .++..+.+..+ |++.|++.+++.
T Consensus        82 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  160 (379)
T TIGR00881        82 SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYS-WHWVFIVPGIIA  160 (379)
T ss_pred             hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCC-chhHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999 46666666666 999998877666


Q ss_pred             HHHH-HHhhcccCCh
Q 018408          255 FILA-LGMQFTVESP  268 (356)
Q Consensus       255 ~~~~-~~~~~~~e~p  268 (356)
                      ++.. +..++.+|+|
T Consensus       161 ~~~~~~~~~~~~~~~  175 (379)
T TIGR00881       161 IIVSLICFLLLRDSP  175 (379)
T ss_pred             HHHHHHHheeeCCCc
Confidence            5543 4455567665

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.87  E-value=6.5e-21  Score=179.28  Aligned_cols=245  Identities=14%  Similarity=0.113  Sum_probs=177.7

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhcchhhHHHHHH----------------------HhCCCCChhHHHHHHHHHHHHHHHHH
Q 018408           84 PAFPHVLIASMSNFLFGYHIGVMNGPIVSIAK----------------------ELGFEGNPILEGLVVSIFIAGAFVGS  141 (356)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~g~~~~~~~~~~~~~~~~~~~~~~~  141 (356)
                      .++....++.++......+....+...+.+.+                      ++++  +..+.|++.+.+.+++.+++
T Consensus        16 ~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~g~~~s~~~~~~~~~~   93 (465)
T TIGR00894        16 FRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKW--SGALQGLILSSHFYGQIIIQ   93 (465)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCC--CHHHhhHHHHHHHHHHHHHH
Confidence            34555555666666556666666555555544                      5666  66779999999999999999


Q ss_pred             HhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHh--hhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhH
Q 018408          142 ISSGSLADKLGCRRTFQIDTIPLILGAIISAQA--HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQ  219 (356)
Q Consensus       142 ~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~  219 (356)
                      ++.|+++||+|||+++.++.++.+++.+++.++  .++..+++.|+++|++.+...+....+++|++|+++|++++++..
T Consensus        94 ~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  173 (465)
T TIGR00894        94 IPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMST  173 (465)
T ss_pred             cchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHH
Confidence            999999999999999999999999988877544  457889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhccCCCC-chhHHHHHHhHHHHHHHHHHhhc-ccCChHHHHhcCCHHHHHHHHHHHcCCcchHHHH
Q 018408          220 VGTCLGIITSLFLGIPAEDDP-HWWRTMLYIASLPGFILALGMQF-TVESPRWLCKGGMLNDAKAVIANLWGESEINKAI  297 (356)
Q Consensus       220 ~~~~~g~~~~~~i~~~l~~~~-~~w~~~~~~~~~~~~~~~~~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (356)
                      .+..+|.++++.+++.+.+.. + |++.|++.+++.++..+.+++ .+|+|+... +.+.+|                 .
T Consensus       174 ~~~~~g~~i~~~l~~~l~~~~~g-w~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~-----------------~  234 (465)
T TIGR00894       174 SGFQLGTFIFLPISGWLCESWGG-WPMIFYVFGIVGCAWSLLWFVFPADDPSIHP-CISKFE-----------------K  234 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCC-CCeehhhhhHHHHHHHHHHHHHhcCCcccCC-CCCHHH-----------------H
Confidence            999999999999999988774 6 999999988877766555444 556653210 000000                 0


Q ss_pred             HHHHHHHHhc--CCCCccchhhhcccCcchhhHHHHHHHHHHHHHHHHHHHhhh
Q 018408          298 EEFQLVIKKD--GSDLDSQWSELLEEPHSRVAFIGDGALASLLVGVTNFAGLRS  349 (356)
Q Consensus       298 ~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (356)
                      +..++..+++  ..+....++++++++.+|...+..............+++.++
T Consensus       235 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l  288 (465)
T TIGR00894       235 KYINSSLQGQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFI  288 (465)
T ss_pred             HHHHhhcccccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111110110  111124688899999998887776444444444444554444

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.86  E-value=3.4e-20  Score=169.96  Aligned_cols=177  Identities=17%  Similarity=0.246  Sum_probs=153.5

Q ss_pred             HHHHHHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHH
Q 018408           88 HVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILG  167 (356)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~  167 (356)
                      ..+.+.+..+........+.+..|.+.+++|.  +..+.+++.+.+.++..++.++.|+++||+|||+++..+.++.+++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~--s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~   83 (385)
T TIGR00710         6 FALLLGCLSILGPLGIDMYLPAFPEIAADLST--PASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALS   83 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHH
Confidence            33444444555666777777888999999999  5666999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHH
Q 018408          168 AIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTML  247 (356)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~  247 (356)
                      .++..++++++.+++.|++.|++.+...+....++.|++|+++|++.+++.+....+|..+++.+++.+.+..+ |++.+
T Consensus        84 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-~~~~~  162 (385)
T TIGR00710        84 SLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLS-WHAIF  162 (385)
T ss_pred             HHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999998888777 99999


Q ss_pred             HHhHHHHHHHHHH-hhcccCC
Q 018408          248 YIASLPGFILALG-MQFTVES  267 (356)
Q Consensus       248 ~~~~~~~~~~~~~-~~~~~e~  267 (356)
                      ++.++..++..+. .++.||+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~  183 (385)
T TIGR00710       163 AFLSLAGILLSALIFFILPET  183 (385)
T ss_pred             HHHHHHHHHHHHHHHHhCCCC
Confidence            9877766655544 3446665

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK09952 shikimate transporter; Provisional

Probab=99.86  E-value=8.6e-20  Score=170.14  Aligned_cols=182  Identities=16%  Similarity=0.133  Sum_probs=145.2

Q ss_pred             hHHHHHHHHHHHHHHHhhhhcchhhHHH-HHHHh--CCCCChhHHHHHH-----HHHHHHHHHHHHhHHhhhhhhchhHH
Q 018408           85 AFPHVLIASMSNFLFGYHIGVMNGPIVS-IAKEL--GFEGNPILEGLVV-----SIFIAGAFVGSISSGSLADKLGCRRT  156 (356)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--g~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~l~dr~Grr~~  156 (356)
                      +++.+....++.+..+++...++...|. +.+++  +.+  +. .+++.     ++..++..+++++.|+++||+|||++
T Consensus        20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~   96 (438)
T PRK09952         20 ARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVS--PA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRM   96 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--cH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHH
Confidence            3455667777888999999888877764 45555  453  33 34443     24456677899999999999999999


Q ss_pred             HHHhHHHHHHHHHHHHHhhhHH--------HHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHH
Q 018408          157 FQIDTIPLILGAIISAQAHSLD--------EMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIIT  228 (356)
Q Consensus       157 ~~~~~~~~~i~~~~~~~~~~~~--------~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~  228 (356)
                      +.++.++++++++++++++++.        .++++|+++|++.|+.++....++.|++|+++|++..+..+.+..+|..+
T Consensus        97 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l  176 (438)
T PRK09952         97 LMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLL  176 (438)
T ss_pred             HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence            9999999999999999999876        58889999999999999999999999999999999999999999999988


Q ss_pred             HHHhhhccC--------CCCchhHHHHHHhHHHHHHHHHHhhcccCChHH
Q 018408          229 SLFLGIPAE--------DDPHWWRTMLYIASLPGFILALGMQFTVESPRW  270 (356)
Q Consensus       229 ~~~i~~~l~--------~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~p~~  270 (356)
                      +..+...+.        ...+ ||+.|++.+++.++........||+|++
T Consensus       177 ~~~~~~~l~~~~~~~~~~~~g-Wr~~f~~~~~~~l~~~~l~~~~~es~~~  225 (438)
T PRK09952        177 STGLVSLISMMTTDEQFLSWG-WRIPFLFSIVLVLIALWVRNGMEESAEF  225 (438)
T ss_pred             HHHHHHHHHHhCCHHHhhccC-hHHHHHHHHHHHHHHHHHHHhCCCChhH
Confidence            877655443        2345 9999999887766555544557888754

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.86  E-value=6.9e-20  Score=169.35  Aligned_cols=181  Identities=16%  Similarity=0.182  Sum_probs=154.2

Q ss_pred             hHHHHHHHHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHH
Q 018408           85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL  164 (356)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~  164 (356)
                      .+.....+.+..+...+....+.+.+|.+.+++|.  +..+.++..+.+.+++.++.++.|+++||+|||++++++.++.
T Consensus        11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~   88 (406)
T PRK15402         11 ALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNA--GAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFF   88 (406)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence            33445555666666666777777888899999998  5667899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhH
Q 018408          165 ILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWR  244 (356)
Q Consensus       165 ~i~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~  244 (356)
                      +++.++..++++++.+++.|++.|++.+...+....++.|.+|+++|++.+++......+|..++|.+++.+.++.+ |+
T Consensus        89 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~-w~  167 (406)
T PRK15402         89 ILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLP-WR  167 (406)
T ss_pred             HHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-cc
Confidence            99999999999999999999999999998888889999999999999999999888888899999999998888777 99


Q ss_pred             HHHHHhHHHHHHHHHH-hhcccCCh
Q 018408          245 TMLYIASLPGFILALG-MQFTVESP  268 (356)
Q Consensus       245 ~~~~~~~~~~~~~~~~-~~~~~e~p  268 (356)
                      +.|++.++..++..+. .++.||++
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~  192 (406)
T PRK15402        168 GMFVLFAALAALSFFGLWRAMPETA  192 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            9999877776665543 34467653

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.86  E-value=9.6e-21  Score=171.28  Aligned_cols=172  Identities=28%  Similarity=0.415  Sum_probs=147.5

Q ss_pred             HHHHHHHHhhhhcchhhHH-HHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHH
Q 018408           93 SMSNFLFGYHIGVMNGPIV-SIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIIS  171 (356)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~  171 (356)
                      .++.+...+......+..| .+.+++|.  +..+.+++.+++.++..++.++.|+++||+|||+++.++.++.+++.++.
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~   79 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEELGL--SPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLL   79 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCSTT--TSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHccCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHh
Confidence            3455666666677778888 88899998  55669999999999999999999999999999999999999999996666


Q ss_pred             HHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhH
Q 018408          172 AQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIAS  251 (356)
Q Consensus       172 ~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~  251 (356)
                      .++++.+.++++|++.|++.+...+....++.|++|+++|++++++.+.+..+|..+++.+++.+.+..+ |++.|++.+
T Consensus        80 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~-~~~~~~~~~  158 (352)
T PF07690_consen   80 AFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFG-WRWAFLISA  158 (352)
T ss_dssp             HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCH-HCCHHHHHH
T ss_pred             hhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccc-ccccccccc
Confidence            6667878999999999999999999999999999999999999999999999999999999999997777 999999988


Q ss_pred             HHHHHHHHH-hhcccCC
Q 018408          252 LPGFILALG-MQFTVES  267 (356)
Q Consensus       252 ~~~~~~~~~-~~~~~e~  267 (356)
                      ++.++..++ ..+++++
T Consensus       159 ~~~~~~~il~~~~~~~~  175 (352)
T PF07690_consen  159 ILSLIAAILFILFLPEP  175 (352)
T ss_dssp             HHHHHHHHHHHCCC---
T ss_pred             chhhhhhhhHhhhhhhc
Confidence            888877654 3445444

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.86  E-value=1.1e-19  Score=167.16  Aligned_cols=152  Identities=14%  Similarity=0.141  Sum_probs=136.4

Q ss_pred             hcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhhhHHHHHHH
Q 018408          104 GVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWG  183 (356)
Q Consensus       104 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  183 (356)
                      ...++.+|.+.+++|+  +..+.+++.+.+.+++.+++++.|+++||+|||+++..+..+.+++.+++++++++..++++
T Consensus        26 ~~~~~~lp~i~~~~~~--s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~  103 (393)
T PRK09705         26 TSVGPLLPQLRQASGM--SFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSS  103 (393)
T ss_pred             hccchhHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHH
Confidence            5677889999999999  66779999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHHHHH
Q 018408          184 RFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILA  258 (356)
Q Consensus       184 ~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~  258 (356)
                      |++.|++.+...+....++.+++| ++|+++++++..+..+|..+++.+++.+.++..+||+.+.+.++..++..
T Consensus       104 r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~  177 (393)
T PRK09705        104 ALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVAL  177 (393)
T ss_pred             HHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999997 77999999999999999999999988887775349998876655544433

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.86  E-value=9.2e-20  Score=167.10  Aligned_cols=176  Identities=14%  Similarity=0.184  Sum_probs=154.8

Q ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHH
Q 018408           89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA  168 (356)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~  168 (356)
                      ++...+..+..+.......+.+|.+.+++|.  +..+.+++.+.+.+++.+++++.|+++||+|||+++.++.++.+++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~   82 (382)
T PRK10091          5 ILSLALGTFGLGMAEFGIMGVLTELAHDVGI--SIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGN   82 (382)
T ss_pred             HHHHHHHHHHHHhhHHHHHhChHHHHHHcCC--CHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHH
Confidence            4555666677777777778888999999999  56669999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHH
Q 018408          169 IISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLY  248 (356)
Q Consensus       169 ~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~  248 (356)
                      ++++++++++.+++.|++.|++.+...+....++.|++|+++|+++++++..+..+|..+++.+++.+.+..+ ||+.|+
T Consensus        83 ~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g-wr~~f~  161 (382)
T PRK10091         83 AMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFS-WRYTFL  161 (382)
T ss_pred             HHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhcc-HHHHHH
Confidence            9999999999999999999999999888888899999999999999999999999999999999998888777 999999


Q ss_pred             HhHHHHHHHHH-HhhcccCC
Q 018408          249 IASLPGFILAL-GMQFTVES  267 (356)
Q Consensus       249 ~~~~~~~~~~~-~~~~~~e~  267 (356)
                      +.++..++..+ ..+++||.
T Consensus       162 ~~~~~~~~~~~~~~~~lp~~  181 (382)
T PRK10091        162 LIAVFNIAVLASIYFWVPDI  181 (382)
T ss_pred             HHHHHHHHHHHHHHHhCCCC
Confidence            98776665544 34456765

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.85  E-value=6.7e-20  Score=166.96  Aligned_cols=174  Identities=21%  Similarity=0.175  Sum_probs=136.1

Q ss_pred             HHHHHHHHHHhhhhcchhhHHH-HHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHH
Q 018408           91 IASMSNFLFGYHIGVMNGPIVS-IAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAI  169 (356)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~  169 (356)
                      ..+++.+........+.+..|. +.+++|+  +..+.+++.+++.+++.++.++.|+++||+|||+.++++.++.+++.+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~   82 (366)
T TIGR00886         5 FSWFGFFLSFSVWFAFSPLAVQMIKDDLGL--STAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCL   82 (366)
T ss_pred             HHHHHHHHHHHHHHHhHHhhhHHHHHHhCC--CHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence            3445555555555667778884 8899999  666799999999999999999999999999999999999999999999


Q ss_pred             HHHHhh-hHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCC----------
Q 018408          170 ISAQAH-SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAED----------  238 (356)
Q Consensus       170 ~~~~~~-~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~----------  238 (356)
                      ++++++ +++.+++.|++.|++.+. ......+++|++|+++|++++++...+..+|..+++.+++.+..          
T Consensus        83 ~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~  161 (366)
T TIGR00886        83 WAGLAVQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPA  161 (366)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            999999 999999999999998654 46677899999999999999999887666776666666544332          


Q ss_pred             CCchhHHHHHH-hHHHHH-HHHHHhhcccCCh
Q 018408          239 DPHWWRTMLYI-ASLPGF-ILALGMQFTVESP  268 (356)
Q Consensus       239 ~~~~w~~~~~~-~~~~~~-~~~~~~~~~~e~p  268 (356)
                      +.+ ||+.|++ .++..+ +..+...+.+|+|
T Consensus       162 ~~~-w~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (366)
T TIGR00886       162 HLA-WGWAFVIVPAGILLLPALLIFFVGADTP  192 (366)
T ss_pred             ccc-ccchhHHHHHHHHHHHHHHHHHhcccCC
Confidence            224 9999844 344333 3334445566654

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.85  E-value=6.6e-21  Score=183.90  Aligned_cols=250  Identities=15%  Similarity=0.102  Sum_probs=175.7

Q ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHH
Q 018408           90 LIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAI  169 (356)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~  169 (356)
                      +...+..+......+..+..++.+.++|++  +..+.|++.+.+.+++.++.++.+++.||+|||+++.++.++++++++
T Consensus        36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~l--ss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~l  113 (633)
T TIGR00805        36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKL--STSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSF  113 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHhhchhhhhhhCC--CCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHH
Confidence            334445566666667788888999999999  455599999999999999999999999999999999999999999999


Q ss_pred             HHHHhh---------------------------------------------------hHHHHHHHHHHHHhhhhhhhhHH
Q 018408          170 ISAQAH---------------------------------------------------SLDEMLWGRFLVGLGIGVNTVLV  198 (356)
Q Consensus       170 ~~~~~~---------------------------------------------------~~~~~~~~~~l~G~~~g~~~~~~  198 (356)
                      ++++.+                                                   .+..++++|+++|++.+..++..
T Consensus       114 l~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~  193 (633)
T TIGR00805       114 LLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLG  193 (633)
T ss_pred             HHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcC
Confidence            887653                                                   24567789999999999999999


Q ss_pred             HHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCC---------------------chhHHHHHHhHHHHHHH
Q 018408          199 PIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP---------------------HWWRTMLYIASLPGFIL  257 (356)
Q Consensus       199 ~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~---------------------~~w~~~~~~~~~~~~~~  257 (356)
                      .+++.|++|+++|++++++++.+..+|.++++++++++.+..                     |+|+..|++.+++.++.
T Consensus       194 ~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~  273 (633)
T TIGR00805       194 ISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLT  273 (633)
T ss_pred             chhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988776432                     23777788877777776


Q ss_pred             HHHhhcccCChHHHHhcCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCccchhhhcccCcchhhHHHHHHHHHH
Q 018408          258 ALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGDGALASL  337 (356)
Q Consensus       258 ~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  337 (356)
                      .+.++++|++.+....+.+.++.++   ...++.+.+. ..+    ..+..++....++.++++|.++...+........
T Consensus       274 ~v~l~~~p~~lp~~~~~~~~~~~~~---~~~~~~~~~~-~~~----~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~  345 (633)
T TIGR00805       274 SIPFFFFPKALPKEGKRVNVDVHET---EKLEKSEDKS-RKK----NSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLA  345 (633)
T ss_pred             HHHHHhCccccCCcccccchhhhhh---hccccccccc-chh----hhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence            6666667764210000000000000   0000000000 000    0000011124577899999998888877555555


Q ss_pred             HHHHHHHHHhhh
Q 018408          338 LVGVTNFAGLRS  349 (356)
Q Consensus       338 ~~~~~~~~~~~~  349 (356)
                      ..+...+++.++
T Consensus       346 ~~~~~~~lP~yl  357 (633)
T TIGR00805       346 FNGYITFLPKYL  357 (633)
T ss_pred             HHHHHHHHHHHH
Confidence            555555555444

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.85  E-value=4.4e-20  Score=167.72  Aligned_cols=168  Identities=10%  Similarity=-0.037  Sum_probs=146.3

Q ss_pred             HHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHH
Q 018408           93 SMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISA  172 (356)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~  172 (356)
                      ..+.+...+........+|.+..+++.  +..+.+++.+++.++..++.++.|+++||+|||++++.+.++.+++.++.+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~   82 (365)
T TIGR00900         5 FAAQLISLIGTAITQVALPLYVLAGTG--SASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLP   82 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHH
Confidence            344555556666677778888888887  677799999999999999999999999999999999999999888888888


Q ss_pred             Hhh-----hHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHH
Q 018408          173 QAH-----SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTML  247 (356)
Q Consensus       173 ~~~-----~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~  247 (356)
                      +..     +++.+++.|++.|++.+...+...+++.|++|+++|++.+++.+.+..+|..+++.+++.+.+..+ |++.|
T Consensus        83 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g-~~~~~  161 (365)
T TIGR00900        83 FVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLG-IKWAI  161 (365)
T ss_pred             HHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHH
Confidence            777     999999999999999999999999999999999999999999999999999999999999888777 99999


Q ss_pred             HHhHHHHHHHHHHhhc
Q 018408          248 YIASLPGFILALGMQF  263 (356)
Q Consensus       248 ~~~~~~~~~~~~~~~~  263 (356)
                      ++.++..++..+..++
T Consensus       162 ~~~~~~~~~~~~~~~~  177 (365)
T TIGR00900       162 WVDAVGFAISALLIVS  177 (365)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            8877766655544433

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.85  E-value=4.4e-20  Score=168.40  Aligned_cols=161  Identities=16%  Similarity=0.083  Sum_probs=139.0

Q ss_pred             hhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhhhHHHHHH
Q 018408          103 IGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLW  182 (356)
Q Consensus       103 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~  182 (356)
                      .....+..|.+.+++|+  +..+.+++.+++.+++.++.++.|+++||+|||+++.++.++.+++.++++++++++.+++
T Consensus        19 ~~~~~~~~~~~~~~~~~--s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (377)
T TIGR00890        19 VYTWTLLAPPLGRYFGV--GVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYL   96 (377)
T ss_pred             HhhhhhHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566778999999999  6777999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHHHHHHHh-
Q 018408          183 GRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGM-  261 (356)
Q Consensus       183 ~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~-  261 (356)
                      +|++.|++.+..++....++.+++| ++|++++++...+..+|..+++.+.+.+.+..+ ||+.|++.+++.++..+.. 
T Consensus        97 ~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~f~~~~~~~~~~~~~~~  174 (377)
T TIGR00890        97 TYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEG-VPAAFIYMGIIFLLVIVLGA  174 (377)
T ss_pred             HHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHH
Confidence            9999999999888888888899987 569999999999999998877766666666666 9999999887776665544 


Q ss_pred             hcccCC
Q 018408          262 QFTVES  267 (356)
Q Consensus       262 ~~~~e~  267 (356)
                      +++++.
T Consensus       175 ~~~~~~  180 (377)
T TIGR00890       175 FLIGYP  180 (377)
T ss_pred             HheecC
Confidence            344443

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.85  E-value=2.6e-19  Score=164.48  Aligned_cols=174  Identities=15%  Similarity=0.021  Sum_probs=134.3

Q ss_pred             HHHHHHHHHHHHHHhhhhcchhhHHHHHH-HhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHH
Q 018408           87 PHVLIASMSNFLFGYHIGVMNGPIVSIAK-ELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLI  165 (356)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~  165 (356)
                      +.+++..++.+.........++..+.+.+ ++|+  +..+.+++.+++.+++.++.++.|+++||+|.|+++.++.++..
T Consensus        34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~l--s~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~  111 (462)
T PRK15034         34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNF--TTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILI  111 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence            44455555555555555666666777765 7898  67779999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHh-----hhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccC---
Q 018408          166 LGAIISAQA-----HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAE---  237 (356)
Q Consensus       166 i~~~~~~~~-----~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~---  237 (356)
                      +.++..+++     +++..+++.|++.|++ +..++.....+++++|+++||+++|+.....++|..+++++...+.   
T Consensus       112 i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~  190 (462)
T PRK15034        112 IPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVP  190 (462)
T ss_pred             HHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            999999886     8999999999999998 6788889999999999999999999996666666655554443211   


Q ss_pred             --CC------------CchhHHHHHHhHHHHHHHHHHhhc
Q 018408          238 --DD------------PHWWRTMLYIASLPGFILALGMQF  263 (356)
Q Consensus       238 --~~------------~~~w~~~~~~~~~~~~~~~~~~~~  263 (356)
                        ..            ..+|+.++++.+++.++..++.++
T Consensus       191 l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~  230 (462)
T PRK15034        191 VFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWS  230 (462)
T ss_pred             HHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence              10            112777777766666655544443

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.85  E-value=2.1e-19  Score=170.52  Aligned_cols=184  Identities=16%  Similarity=0.292  Sum_probs=162.2

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHH
Q 018408           84 PAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIP  163 (356)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~  163 (356)
                      .+++.+..++++.+...++.......+|.+.+++|.  +..+.+++.+.+.+++.++.++.|+++||+|||++++++.++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   94 (496)
T PRK03893         17 AQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGL--TTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVL   94 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            345566777788888888888888889999999998  566789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchh
Q 018408          164 LILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWW  243 (356)
Q Consensus       164 ~~i~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w  243 (356)
                      .+++.++.+++++++.+++.|++.|++.++..+....++.|++|+++|++++++...+..+|..+++.+.+.+.+..+ |
T Consensus        95 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-w  173 (496)
T PRK03893         95 FSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWG-W  173 (496)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-H
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999888877 9


Q ss_pred             HHHHHHhHHHHHHHHHHhhcccCChHH
Q 018408          244 RTMLYIASLPGFILALGMQFTVESPRW  270 (356)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~e~p~~  270 (356)
                      |+.|++.++..++..+....+||++++
T Consensus       174 ~~~f~~~~~~~~~~~~~~~~~p~~~~~  200 (496)
T PRK03893        174 RALFFIGILPIIFALWLRKNLPEAEDW  200 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCchhh
Confidence            999988666555544445557877654

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.85  E-value=4.2e-20  Score=170.62  Aligned_cols=218  Identities=22%  Similarity=0.279  Sum_probs=176.8

Q ss_pred             HhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhh--hHHHHHHHHHHHHhhhhh
Q 018408          116 ELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAH--SLDEMLWGRFLVGLGIGV  193 (356)
Q Consensus       116 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~l~G~~~g~  193 (356)
                      ++++  +..+.+++.+.+++|+++++++.|+++||+|-|+++.++.++.++++++..++.  +++.+++.|+++|++.|.
T Consensus        67 ~~~w--s~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~  144 (466)
T KOG2532|consen   67 EYDW--SSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV  144 (466)
T ss_pred             eecC--CHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence            4556  667799999999999999999999999999999999999999999999998775  445778899999999999


Q ss_pred             hhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCC-CchhHHHHHHhHHHHHHHHHHhhc-ccCChHHH
Q 018408          194 NTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDD-PHWWRTMLYIASLPGFILALGMQF-TVESPRWL  271 (356)
Q Consensus       194 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~-~~~w~~~~~~~~~~~~~~~~~~~~-~~e~p~~~  271 (356)
                      .++....+.+.|+|+++|++..++...+..+|.+++-++++++.+. .| |+++|++.++..++..+++++ ..|+|.. 
T Consensus       145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~G-W~sifY~~g~~g~i~~~~w~~~~~d~P~~-  222 (466)
T KOG2532|consen  145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLG-WPSIFYVFGIVGLIWFILWFLFYSDSPSK-  222 (466)
T ss_pred             HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCC-CchHHHHHHHHHHHHHHHHHHHhcCCccc-
Confidence            9999999999999999999999999999999999999999999988 56 999999999888887766544 5566642 


Q ss_pred             HhcCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCC--CccchhhhcccCcchhhHHHHHHHHHHHHHHHHHHHhhh
Q 018408          272 CKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSD--LDSQWSELLEEPHSRVAFIGDGALASLLVGVTNFAGLRS  349 (356)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (356)
                        +..               -.++|.+.+++...++..+  .+..|++++++|.+|...+.............+.+++++
T Consensus       223 --h~~---------------is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~  285 (466)
T KOG2532|consen  223 --HPN---------------ISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYL  285 (466)
T ss_pred             --CCC---------------CCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence              111               1111222222222222111  357899999999999999999888888888888888887


Q ss_pred             hhhcc
Q 018408          350 EKYCG  354 (356)
Q Consensus       350 ~~~~g  354 (356)
                      .-.++
T Consensus       286 ~~VL~  290 (466)
T KOG2532|consen  286 KEVLG  290 (466)
T ss_pred             HHHhC
Confidence            76554

>PRK03699 putative transporter; Provisional

Probab=99.85  E-value=5.1e-19  Score=162.86  Aligned_cols=175  Identities=15%  Similarity=0.087  Sum_probs=152.8

Q ss_pred             hHHHHHHHHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHH
Q 018408           85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL  164 (356)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~  164 (356)
                      +++.++.+.+..+..+......+..+|.+.+++|+  +..+.+++.+.+.+++.++.++.|+++||+|||++++.+.++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~--s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~   82 (394)
T PRK03699          5 RIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNL--PVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALM   82 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            45566677778888888888888889999999999  6677999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCC-Cchh
Q 018408          165 ILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDD-PHWW  243 (356)
Q Consensus       165 ~i~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~-~~~w  243 (356)
                      +++.++.+++++++.+++.|++.|++.+...+....++.|++|+++|+..+++.+....+|+.++|.+.+.+... .+ |
T Consensus        83 ~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~g-w  161 (394)
T PRK03699         83 ILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIE-W  161 (394)
T ss_pred             HHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-H
Confidence            999999999999999999999999999988888889999999999999999998888899999999888776543 45 9


Q ss_pred             HHHHHHhHHHHHHHHHHhh
Q 018408          244 RTMLYIASLPGFILALGMQ  262 (356)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~  262 (356)
                      |+.|.+.+++.++..+..+
T Consensus       162 ~~~f~~~~~~~~~~~~~~~  180 (394)
T PRK03699        162 YWVYACIGLVYVAIFILTL  180 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999987777665554433

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.85  E-value=1.3e-19  Score=169.72  Aligned_cols=175  Identities=14%  Similarity=0.108  Sum_probs=137.3

Q ss_pred             HHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHH
Q 018408           92 ASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIIS  171 (356)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~  171 (356)
                      +.+...........+....|++.++ |+  +..+.+++.+.+.+++.+++++.|+++||+|||++++++.++.+++.+++
T Consensus        34 ~~~~~~~~~~~~~~~~~~~p~l~~~-g~--s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~  110 (452)
T PRK11273         34 IFFGYAAYYLVRKNFALAMPYLVEQ-GF--SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFM  110 (452)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHc-CC--CHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHH
Confidence            3333344444444456667888877 88  56679999999999999999999999999999999999999999999888


Q ss_pred             HHhh----hHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHH-HHHHhhhccCCCCchhHHH
Q 018408          172 AQAH----SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGII-TSLFLGIPAEDDPHWWRTM  246 (356)
Q Consensus       172 ~~~~----~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~-~~~~i~~~l~~~~~~w~~~  246 (356)
                      ++.+    ++..++++|++.|++.+...+.....+.|++|+++|++++++++.+..+|+. .+++++..+....+ ||+.
T Consensus       111 ~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g-w~~~  189 (452)
T PRK11273        111 GFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFND-WHAA  189 (452)
T ss_pred             HhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcc-HHHH
Confidence            7753    6778889999999999988888888899999999999999999999998864 45544332322335 9999


Q ss_pred             HHHhHHHHHHH-HHHhhcccCChHH
Q 018408          247 LYIASLPGFIL-ALGMQFTVESPRW  270 (356)
Q Consensus       247 ~~~~~~~~~~~-~~~~~~~~e~p~~  270 (356)
                      |++.+++.++. ++..+++||+|+.
T Consensus       190 f~i~~~~~~~~~~l~~~~~~~~~~~  214 (452)
T PRK11273        190 LYMPAFAAILVALFAFAMMRDTPQS  214 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHccCCHhh
Confidence            99877766554 4455667887653

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.85  E-value=9.9e-20  Score=164.49  Aligned_cols=161  Identities=11%  Similarity=0.071  Sum_probs=141.3

Q ss_pred             hcchhhHHHHHHHhCCCCChhH-HHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhhhHHHHHH
Q 018408          104 GVMNGPIVSIAKELGFEGNPIL-EGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLW  182 (356)
Q Consensus       104 ~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~  182 (356)
                      .......|.+.+++|+  +..+ .|.+.++++.++.++.+++|+++||+|.|+++.++.+.+++.+++.++++++..+.+
T Consensus        43 ~n~s~a~p~L~~elgl--T~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i  120 (511)
T TIGR00806        43 PGESFITPYLLTVLNF--TEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQL  120 (511)
T ss_pred             chHHHHHHHHHHHcCC--CHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455667899999999  6667 899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHH---hHHHHHHHHH
Q 018408          183 GRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYI---ASLPGFILAL  259 (356)
Q Consensus       183 ~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~---~~~~~~~~~~  259 (356)
                      .|++.|++.|... ....++..++|+++|+++.+++..+..+|.++++++++. ....+ |++.+.+   .....+++++
T Consensus       121 ~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~g-Wr~y~~Ln~Isl~s~~~a~~  197 (511)
T TIGR00806       121 MEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLG-WISYSTLNIISLVFMTFSVF  197 (511)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcC-chhHHHHHHHHHHHHHHHHH
Confidence            9999999999999 999999999999999999999999999999999999998 44556 8775543   4444455566


Q ss_pred             HhhcccCChH
Q 018408          260 GMQFTVESPR  269 (356)
Q Consensus       260 ~~~~~~e~p~  269 (356)
                      +.+++|..++
T Consensus       198 ~a~~LP~~~~  207 (511)
T TIGR00806       198 LALFLKRPKR  207 (511)
T ss_pred             HHHhCCCCch
Confidence            6788886554

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK10504 putative transporter; Provisional

Probab=99.84  E-value=6.4e-19  Score=166.07  Aligned_cols=177  Identities=21%  Similarity=0.317  Sum_probs=155.5

Q ss_pred             HHHHHHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHH
Q 018408           88 HVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILG  167 (356)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~  167 (356)
                      .++.++++.+...++...+++.+|.+.+++|.  +..+.+++.+.+.++..++.+++|+++||+|||++++.+.++.+++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~--s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~   88 (471)
T PRK10504         11 QLWIVAFGFFMQSLDTTIVNTALPSMAQSLGE--SPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLG   88 (471)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence            45666777788888888888889999999998  6667889999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHH
Q 018408          168 AIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTML  247 (356)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~  247 (356)
                      .+++.++++++.++++|+++|++.+...+....++.|++|+++|+++.++......+|..++|.+++.+.++.+ |++.|
T Consensus        89 ~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~g-w~~~f  167 (471)
T PRK10504         89 SLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYAS-WHWIF  167 (471)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcc-HHHHH
Confidence            98888899999999999999999999999999999999999999999999999999999999999999988887 99999


Q ss_pred             HHhHHHHHHHHHHh-hcccCC
Q 018408          248 YIASLPGFILALGM-QFTVES  267 (356)
Q Consensus       248 ~~~~~~~~~~~~~~-~~~~e~  267 (356)
                      ++.....++..+.. ...|+.
T Consensus       168 ~~~~~~~~l~~~~~~~~~~~~  188 (471)
T PRK10504        168 LINIPVGIIGAIATLMLMPNY  188 (471)
T ss_pred             HHHHHHHHHHHHHHHHhCCCc
Confidence            99876666555443 334443

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.84  E-value=3.5e-19  Score=164.01  Aligned_cols=181  Identities=17%  Similarity=0.207  Sum_probs=152.7

Q ss_pred             hHHHHHHHHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHH
Q 018408           85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL  164 (356)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~  164 (356)
                      .++.++.+.+..+...+....+.+.+|.+.+++|.  ++.+.+++.+.+.+++.++.++.|+++||+|||+++.++.++.
T Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~--s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~   83 (394)
T PRK11652          6 NVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNV--REGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIF   83 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHH
Confidence            34444555555555556666677778999999999  5666999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhH
Q 018408          165 ILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWR  244 (356)
Q Consensus       165 ~i~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~  244 (356)
                      +++.+++.++++++.+++.|++.|++.+...+....+..|.++.++|+.++++.+.+..+|..++|.+++.+.+..+ |+
T Consensus        84 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g-~~  162 (394)
T PRK11652         84 ILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFG-WR  162 (394)
T ss_pred             HHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hH
Confidence            99999999999999999999999999988888888889999999999999999999999999999999998888777 99


Q ss_pred             HHHHHhHHHHHHHH-HHhhcccCCh
Q 018408          245 TMLYIASLPGFILA-LGMQFTVESP  268 (356)
Q Consensus       245 ~~~~~~~~~~~~~~-~~~~~~~e~p  268 (356)
                      +.|++.++..++.. +..++.||++
T Consensus       163 ~~f~~~~~~~~~~~~~~~~~~~~~~  187 (394)
T PRK11652        163 ACYLFLLLLGAGVTFSMARWMPETR  187 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCccC
Confidence            99998776655443 3445577763

>PRK11043 putative transporter; Provisional

Probab=99.84  E-value=5.2e-19  Score=163.21  Aligned_cols=169  Identities=17%  Similarity=0.159  Sum_probs=146.8

Q ss_pred             HHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhh
Q 018408           96 NFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAH  175 (356)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~  175 (356)
                      .+...+....+.+..|.+.+++|.  +..+.+++.+++.+++.++++++|+++||+|||+++..+.++..++.+++.+++
T Consensus        15 ~~~~~~~~~~~~p~~~~i~~~~~~--s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~   92 (401)
T PRK11043         15 SMLGFLATDMYLPAFKAIQADLQT--SASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVE   92 (401)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhc
Confidence            344445556667777888999998  677799999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHH
Q 018408          176 SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGF  255 (356)
Q Consensus       176 ~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~  255 (356)
                      +++.+++.|++.|++.+...+....++.|++|+++++...+.......+|..++|.+++.+.+..+ |++.|++.++..+
T Consensus        93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g-~~~~~~~~~~~~~  171 (401)
T PRK11043         93 SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFG-WQAIFATLFAITL  171 (401)
T ss_pred             CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHH
Confidence            999999999999999888888888899999999989999998888889999999999999888887 9999998877777


Q ss_pred             HHHHHhhcccCC
Q 018408          256 ILALGMQFTVES  267 (356)
Q Consensus       256 ~~~~~~~~~~e~  267 (356)
                      +..+..++++|+
T Consensus       172 ~~~~~~~~~~~~  183 (401)
T PRK11043        172 LLILPTLRLKPS  183 (401)
T ss_pred             HHHHHHHHcCCC
Confidence            766655556554

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.84  E-value=6.2e-20  Score=169.94  Aligned_cols=225  Identities=17%  Similarity=0.155  Sum_probs=171.1

Q ss_pred             HHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhh
Q 018408          112 SIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGI  191 (356)
Q Consensus       112 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~G~~~  191 (356)
                      .+.++.++  ...+.+.+.+++.++++++.++++.+.||++-.+.+....+++++..++.+..+|++.+++.|++.|+++
T Consensus        71 g~~edl~~--~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~e  148 (495)
T KOG2533|consen   71 GLKEDLKL--VGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFE  148 (495)
T ss_pred             CCccccch--hhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            34567666  4455899999999999999999999999999999999999999998888888999999999999999999


Q ss_pred             hhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCC------CCchhHHHHHHhHHHHHHHHH-Hhhcc
Q 018408          192 GVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAED------DPHWWRTMLYIASLPGFILAL-GMQFT  264 (356)
Q Consensus       192 g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~------~~~~w~~~~~~~~~~~~~~~~-~~~~~  264 (356)
                      ++.+|....+++.||.+++||+.++++..+..+|.++|.+++..+..      ..| |||.|++.++++++..+ +.+++
T Consensus       149 s~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~g-W~~~FiI~G~i~~~~gi~~f~~l  227 (495)
T KOG2533|consen  149 SGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAG-WRWLFIIEGVITLVLGIVVFFFL  227 (495)
T ss_pred             cccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCC-ceeehhHHHHHHHHHHheEEEEe
Confidence            99999999999999999999999999999999999999999887532      334 99999998877776654 55668


Q ss_pred             cCChHHHHhcCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCccchhhhcccCcchhhHHHHHHHHHHHHHHHHH
Q 018408          265 VESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGDGALASLLVGVTNF  344 (356)
Q Consensus       265 ~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  344 (356)
                      |+.|.-..-..+ +|..-..++.+..          +.... +++.+...+++.+++|..|...++..+....-.++.++
T Consensus       228 p~~P~~~~fl~~-~ek~~~~~~~~~~----------~~~~~-~~~~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~  295 (495)
T KOG2533|consen  228 PDNPSKAWFLTD-EEKELVVERLRES----------PSGGI-ENKFKWKGFKEALKDPGVWPFSLCYFFLKLVNYGFSYW  295 (495)
T ss_pred             cCChhhccccch-HHHHHHHHHHHhc----------cCCCc-ccccCHHHHHHHHhchhHHHHHHHHHHHhhccccHHHH
Confidence            988752100000 0000000000000          00000 01133578999999999999999987766666666666


Q ss_pred             HHhhhhh
Q 018408          345 AGLRSEK  351 (356)
Q Consensus       345 ~~~~~~~  351 (356)
                      .+.++.-
T Consensus       296 lpl~l~~  302 (495)
T KOG2533|consen  296 LPLYLKS  302 (495)
T ss_pred             HHHHHHc
Confidence            6666544

>PRK10133 L-fucose transporter; Provisional

Probab=99.83  E-value=8.9e-19  Score=163.01  Aligned_cols=149  Identities=19%  Similarity=0.260  Sum_probs=131.1

Q ss_pred             HHHHHHHHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHH
Q 018408           86 FPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLI  165 (356)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~  165 (356)
                      ...+..+.+.++..++.........|.+++++|.  ++.+.+++.+.+.+++.+++++.|+++||+|||+++.++.++.+
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~--s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~  102 (438)
T PRK10133         25 IIPFALLCSLFFLWAVANNLNDILLPQFQQAFTL--TNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYA  102 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            3345566677777788888888889999999999  67779999999999999999999999999999999999999999


Q ss_pred             HHHHHH---HHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhcc
Q 018408          166 LGAIIS---AQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPA  236 (356)
Q Consensus       166 i~~~~~---~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l  236 (356)
                      ++.+++   ..++++..++++|+++|++.|...+....++.|+.|.++|+..+++.+..+.+|..+++.++..+
T Consensus       103 ~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l  176 (438)
T PRK10133        103 LGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL  176 (438)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999875   45789999999999999999999999999999987777777789999999999999999887643

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.83  E-value=2.2e-19  Score=167.49  Aligned_cols=179  Identities=15%  Similarity=0.109  Sum_probs=143.2

Q ss_pred             HHHHHHHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHH
Q 018408           87 PHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLIL  166 (356)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i  166 (356)
                      ..++...+.+.........+....|.+.+ +|.  +..+.+++.+++.++..++.++.|+++||+|||+.+.++.++.++
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~--s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~  103 (438)
T TIGR00712        27 QVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGF--SKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAA  103 (438)
T ss_pred             HHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCC--CHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHH
Confidence            33444444555555555555666777775 587  666799999999999999999999999999999999999999999


Q ss_pred             HHHHHHHh----hhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCC-CCc
Q 018408          167 GAIISAQA----HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAED-DPH  241 (356)
Q Consensus       167 ~~~~~~~~----~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~-~~~  241 (356)
                      +.++.++.    .++..+++.|++.|++.+..++....++.|++|+++|++++++++.+..+|+.+++.+.+...+ ..+
T Consensus       104 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~  183 (438)
T TIGR00712       104 VMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFND  183 (438)
T ss_pred             HHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhh
Confidence            88877654    4567778889999999998888888999999999999999999999999999998887665444 345


Q ss_pred             hhHHHHHHhHHHHHHHH-HHhhcccCChH
Q 018408          242 WWRTMLYIASLPGFILA-LGMQFTVESPR  269 (356)
Q Consensus       242 ~w~~~~~~~~~~~~~~~-~~~~~~~e~p~  269 (356)
                       ||+.|++.+++.++.. +..+++||+|+
T Consensus       184 -w~~~f~~~~~~~~i~~~~~~~~~~~~~~  211 (438)
T TIGR00712       184 -WHAALYFPAICAIIVALFAFAMMRDTPQ  211 (438)
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence             9999999877766654 45566788764

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.83  E-value=7.4e-19  Score=161.73  Aligned_cols=171  Identities=20%  Similarity=0.296  Sum_probs=147.0

Q ss_pred             HHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHH
Q 018408           94 MSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQ  173 (356)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~  173 (356)
                      ...+........+.+.+|.+.+++|.  +..+.++..+.+.++..++.++.|+++||+|||+.++++.++.+++.+++..
T Consensus        10 ~~~~~~~~~~~~~~~~lp~~~~~~~~--s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~   87 (392)
T PRK10473         10 ALVLLYPAGIDMYLVGLPRIAADLNA--SEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSL   87 (392)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence            33344444555556778999999998  5667899999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHH
Q 018408          174 AHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLP  253 (356)
Q Consensus       174 ~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~  253 (356)
                      +++++.+++.|++.|++.+...+....++.|.+|+++|++++++.+....+|..++|.+++.+.+..+ |++.+++.++.
T Consensus        88 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g-~~~~~~~~~~~  166 (392)
T PRK10473         88 AETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFP-WQSLFYTMAAM  166 (392)
T ss_pred             hCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC-hHHHHHHHHHH
Confidence            99999999999999999999889999999999999999999999999999999999999888777777 99999988776


Q ss_pred             HHHHHH-HhhcccCC
Q 018408          254 GFILAL-GMQFTVES  267 (356)
Q Consensus       254 ~~~~~~-~~~~~~e~  267 (356)
                      .++..+ ..+++||+
T Consensus       167 ~~i~~~~~~~~~~~~  181 (392)
T PRK10473        167 GILVLLLSLFILKET  181 (392)
T ss_pred             HHHHHHHHHHHcCCC
Confidence            665544 34556765

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.83  E-value=1.2e-18  Score=160.65  Aligned_cols=171  Identities=18%  Similarity=0.198  Sum_probs=147.3

Q ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHH
Q 018408           89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA  168 (356)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~  168 (356)
                      +..++...+..++..+..++.+|.+++++|+  +..+.+++.+.+.+++.++.++.|++.||+|||++++++.++++++.
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~--s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~   82 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMVPQFQQAFTL--TAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGA   82 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence            4566677788888888888999999999999  67779999999999999999999999999999999999999999998


Q ss_pred             HHHHH---hhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCC-----
Q 018408          169 IISAQ---AHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP-----  240 (356)
Q Consensus       169 ~~~~~---~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~-----  240 (356)
                      ++...   .++++.+++.|++.|++.|...+....++.+..|+++|++.+++.+.+..+|..+++.++..+....     
T Consensus        83 ~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~  162 (410)
T TIGR00885        83 FLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQS  162 (410)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccch
Confidence            87644   3588999999999999999999999999999999999999999999999999999999887664221     


Q ss_pred             --------------------chhHHHHHHhHHHHHHHHHHh
Q 018408          241 --------------------HWWRTMLYIASLPGFILALGM  261 (356)
Q Consensus       241 --------------------~~w~~~~~~~~~~~~~~~~~~  261 (356)
                                          .+||+.|++.+++.++..+..
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~  203 (410)
T TIGR00885       163 QDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLI  203 (410)
T ss_pred             hhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                139999988777666554443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK15075 citrate-proton symporter; Provisional

Probab=99.82  E-value=4.1e-18  Score=158.82  Aligned_cols=167  Identities=22%  Similarity=0.302  Sum_probs=134.1

Q ss_pred             HHHHHHHHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHH-----HHHHHHHHHhHHhhhhhhchhHHHHHh
Q 018408           86 FPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIF-----IAGAFVGSISSGSLADKLGCRRTFQID  160 (356)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~~~~~~~~g~l~dr~Grr~~~~~~  160 (356)
                      ++....+.++.+...++...++...|.+.++++.+..+. ..+..+..     .++..+++++.|+++||+|||+.++.+
T Consensus        14 ~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~   92 (434)
T PRK15075         14 ARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEF-ASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVT   92 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCch-HHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHH
Confidence            345677788899999999999999999999998854431 22222222     223347889999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhHH--------HHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHh
Q 018408          161 TIPLILGAIISAQAHSLD--------EMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFL  232 (356)
Q Consensus       161 ~~~~~i~~~~~~~~~~~~--------~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i  232 (356)
                      .++.+++.+++++++++.        .++++|+++|++.+...+....+++|++|+++|++++++...+..+|..+++.+
T Consensus        93 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~  172 (434)
T PRK15075         93 LSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALL  172 (434)
T ss_pred             HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998876        368899999999999988889999999999999999999888877777777666


Q ss_pred             hhccC--------CCCchhHHHHHHhHHHH
Q 018408          233 GIPAE--------DDPHWWRTMLYIASLPG  254 (356)
Q Consensus       233 ~~~l~--------~~~~~w~~~~~~~~~~~  254 (356)
                      ++.+.        +..+ ||+.|++.++..
T Consensus       173 g~~l~~~~~~~~~~~~g-Wr~~f~~~~~~~  201 (434)
T PRK15075        173 GYLLNQWLSPAQMAEWG-WRIPFLIGCLIV  201 (434)
T ss_pred             HHHHHHhCCHHHHhccc-hHHHHHHHHHHH
Confidence            55442        3456 999999865443

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.82  E-value=6.9e-19  Score=166.43  Aligned_cols=183  Identities=15%  Similarity=0.111  Sum_probs=138.2

Q ss_pred             cchhhHHHHH-HHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHH-H--HHhhhHHHH
Q 018408          105 VMNGPIVSIA-KELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAII-S--AQAHSLDEM  180 (356)
Q Consensus       105 ~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~-~--~~~~~~~~~  180 (356)
                      ....++|.+. +.+|+  +....++..+...++..++.++.|+++||+|||+.++++.++..++.+. .  ..+++...+
T Consensus       268 ~~~~~~p~~l~~~~g~--s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (490)
T PRK10642        268 MLLTYMPSYLSHNLHY--SEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLI  345 (490)
T ss_pred             HHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence            3344556554 56787  4444667777888899999999999999999999988877654433332 2  223456777


Q ss_pred             HHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHHHHHHH
Q 018408          181 LWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALG  260 (356)
Q Consensus       181 ~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~  260 (356)
                      ++++++.|++.+...+....++.|++|++.|++++++......+++.++|.+.+++.+..++|+..+++..+++++.++.
T Consensus       346 ~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~  425 (490)
T PRK10642        346 FAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLIT  425 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Confidence            78899999888877777888899999999999999974433455567888888887765544777777767777777777


Q ss_pred             hhcccCChHHHHhc-----CCHHHHHHHHHHHcC
Q 018408          261 MQFTVESPRWLCKG-----GMLNDAKAVIANLWG  289 (356)
Q Consensus       261 ~~~~~e~p~~~~~~-----~~~~~~~~~~~~~~~  289 (356)
                      .+++||+|+++.++     ++.+|+++.++++++
T Consensus       426 ~~~~pes~~~~~~~~~~~~~~~~~a~~~l~~~~~  459 (490)
T PRK10642        426 GVTMKETANRPLKGATPAASDIQEAKEILVEHYD  459 (490)
T ss_pred             HHHhccccCCCCCCccccccchhhHHHHhhcccc
Confidence            77789999987755     888999999998874

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.82  E-value=8.7e-18  Score=154.00  Aligned_cols=151  Identities=19%  Similarity=0.253  Sum_probs=137.4

Q ss_pred             HHHHHHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHH
Q 018408           88 HVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILG  167 (356)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~  167 (356)
                      .++.+.++.+.........++.+|.+.+++|.  +..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~--s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~   84 (381)
T PRK03633          7 PVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHL--PTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAG   84 (381)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35666677777888888899999999999998  6677999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCC
Q 018408          168 AIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP  240 (356)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~  240 (356)
                      .++++++++++.++++|++.|++.+...+.....+.+..++++|++++++++.+..+|..+++.+++.+.+..
T Consensus        85 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  157 (381)
T PRK03633         85 CAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTEL  157 (381)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            9999999999999999999999999888888778888999999999999999999999999999999887653

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.81  E-value=2.4e-18  Score=158.14  Aligned_cols=170  Identities=19%  Similarity=0.146  Sum_probs=138.3

Q ss_pred             HHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHH
Q 018408           92 ASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIIS  171 (356)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~  171 (356)
                      ..++.++..+.........+.+.++++.  +..+.+++.+.+.+++.++.++.|+++||+|||++++++.++.+++.+++
T Consensus         8 l~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~   85 (393)
T PRK11195          8 IMAAQFFSALADNALLFAAIALLKELHY--PDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLM   85 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHH
Confidence            3444555555444444545566778877  56668999999999999999999999999999999999999999888877


Q ss_pred             HHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhH
Q 018408          172 AQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIAS  251 (356)
Q Consensus       172 ~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~  251 (356)
                      ++..+.   ++.|+++|++.+...+...+++.|++|+++|++++++.+....+|..+||.+++.+.+. . |+..+.+.+
T Consensus        86 ~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~-~~~~~~i~~  160 (393)
T PRK11195         86 LFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP-H-AEAALAVCA  160 (393)
T ss_pred             HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHH
Confidence            776664   67899999999999999999999999999999999999999999999999999998874 3 666666665


Q ss_pred             HHHHHHHHHhhcccCCh
Q 018408          252 LPGFILALGMQFTVESP  268 (356)
Q Consensus       252 ~~~~~~~~~~~~~~e~p  268 (356)
                      ...++..+..+++||+|
T Consensus       161 ~~~~~~~~~~~~l~~~~  177 (393)
T PRK11195        161 LIYLLAALFNLFIPRLG  177 (393)
T ss_pred             HHHHHHHHHHhcCCCCc
Confidence            55555555556678764

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.81  E-value=1.6e-18  Score=162.28  Aligned_cols=157  Identities=17%  Similarity=0.164  Sum_probs=135.1

Q ss_pred             hcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhhhHHHHHH-
Q 018408          104 GVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLW-  182 (356)
Q Consensus       104 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~-  182 (356)
                      ..++...|.+.+++|.  +..+.+++.+.+.++..++.++.|+++||+|||++++.+.++.++++++++++++++.+++ 
T Consensus        36 ~~~~~~~~~i~~~~g~--s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~  113 (455)
T TIGR00892        36 KAVTVFFKELQQIFQA--TYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLT  113 (455)
T ss_pred             cchhhhHHHHHHHhCc--chhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHH
Confidence            4456678899999999  5556899999999999999999999999999999999999999999999999999888765 


Q ss_pred             HHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHHHHHHHhh
Q 018408          183 GRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQ  262 (356)
Q Consensus       183 ~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~  262 (356)
                      .|++.|++.+...+....++.++++ ++|++++++.+.+..+|..++|.+++.+.+..+ ||+.|++.+++.++..+..+
T Consensus       114 ~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~g-wr~~f~~~~~~~~~~~v~~~  191 (455)
T TIGR00892       114 AGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFG-WRGSFLILGGLLLHCCVCGA  191 (455)
T ss_pred             HHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHH
Confidence            4689999998776777788899996 789999999999999999999999998888777 99999998877766555444


Q ss_pred             cc
Q 018408          263 FT  264 (356)
Q Consensus       263 ~~  264 (356)
                      ++
T Consensus       192 ~~  193 (455)
T TIGR00892       192 LM  193 (455)
T ss_pred             Hh
Confidence            43

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.81  E-value=1.9e-18  Score=158.15  Aligned_cols=162  Identities=19%  Similarity=0.324  Sum_probs=144.7

Q ss_pred             hhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhhhHHHHHH
Q 018408          103 IGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLW  182 (356)
Q Consensus       103 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~  182 (356)
                      ...+.+.+|.+.+++|.  +..+.+++.+++.++..++.++.|+++||+|||+++..+.++.+++.+++.++++++.+++
T Consensus         7 ~~~~~p~~~~~~~~~~~--s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   84 (377)
T PRK11102          7 IDMYLPALPVIAADFGV--SAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIY   84 (377)
T ss_pred             HHHHhccHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHH
Confidence            34556778899999998  6677999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHHHHHH-Hh
Q 018408          183 GRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILAL-GM  261 (356)
Q Consensus       183 ~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~-~~  261 (356)
                      .|++.|++.+...+....++.|++|+++|++++++.+.+..+|..++|.+++.+.+..+ |++.|++.+++.++..+ ..
T Consensus        85 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~  163 (377)
T PRK11102         85 MRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFS-WHAIFWVLALAAILAAALVF  163 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-hHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998888777 99999987777666544 34


Q ss_pred             hcccCC
Q 018408          262 QFTVES  267 (356)
Q Consensus       262 ~~~~e~  267 (356)
                      +++||+
T Consensus       164 ~~~~~~  169 (377)
T PRK11102        164 FFIPET  169 (377)
T ss_pred             HhCCcc
Confidence            556765

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.80  E-value=2.1e-18  Score=159.05  Aligned_cols=178  Identities=19%  Similarity=0.191  Sum_probs=145.4

Q ss_pred             HHHHHHHHHHHHHHHhhhhcchhhHHH-HHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHH
Q 018408           86 FPHVLIASMSNFLFGYHIGVMNGPIVS-IAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL  164 (356)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~  164 (356)
                      .+.+..+.+..+....+..+..+.+|. +.+++|.  +..+.+++.+++.+++.+++++.|+++||+|||++++.+.++.
T Consensus        14 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~--s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~   91 (399)
T PRK05122         14 TLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGF--SAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGC   91 (399)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--cHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHH
Confidence            344455666666666777777777775 5788898  5677999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHh--------hhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhcc
Q 018408          165 ILGAIISAQA--------HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPA  236 (356)
Q Consensus       165 ~i~~~~~~~~--------~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l  236 (356)
                      +++.+.+.++        .++..+++.|+++|++.+...+....++.|++|+++|++++++...+..+|..+++.+++.+
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l  171 (399)
T PRK05122         92 ALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLL  171 (399)
T ss_pred             HHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHH
Confidence            8776655443        25667889999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCCchhHHHHHHhHHHHHHHHHHhhcccC
Q 018408          237 EDDPHWWRTMLYIASLPGFILALGMQFTVE  266 (356)
Q Consensus       237 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e  266 (356)
                      .+..+ |++.+++.++..++..+.....|+
T Consensus       172 ~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~  200 (399)
T PRK05122        172 YHWGG-LAGLGLLIMLLALLGLLLARPRPA  200 (399)
T ss_pred             HHccc-HHHHHHHHHHHHHHHHHHHhcCCC
Confidence            88878 999888776665554444333444

>PRK12382 putative transporter; Provisional

Probab=99.79  E-value=1.1e-17  Score=153.83  Aligned_cols=174  Identities=14%  Similarity=0.154  Sum_probs=137.2

Q ss_pred             HHHHHHHHHHHhhhhcchhhHHH-HHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHH
Q 018408           90 LIASMSNFLFGYHIGVMNGPIVS-IAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA  168 (356)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~  168 (356)
                      +.+.++.+......+...+.+|. +.+++|.  +..+.+++.+++.+++.+++++.|+++||+|||++++.+.++..++.
T Consensus        18 ~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~--s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~   95 (392)
T PRK12382         18 FRIAFAVFLTYMTVGLPLPVIPLFVHHDLGF--GNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAG   95 (392)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHhcCC--cHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHH
Confidence            33344444444555666677774 5788998  66779999999999999999999999999999999999888777665


Q ss_pred             HHHHH--------hhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCC
Q 018408          169 IISAQ--------AHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP  240 (356)
Q Consensus       169 ~~~~~--------~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~  240 (356)
                      +....        .++++.++++|+++|++.+...+....++.|++|+++|++++++.+.+..+|..++|.+++.+.+..
T Consensus        96 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~  175 (392)
T PRK12382         96 LAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHF  175 (392)
T ss_pred             HHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            43221        3578889999999999999888888889999999999999999999999999999999999888877


Q ss_pred             chhHHHHHHhHHHHHHHHHHhhcccC
Q 018408          241 HWWRTMLYIASLPGFILALGMQFTVE  266 (356)
Q Consensus       241 ~~w~~~~~~~~~~~~~~~~~~~~~~e  266 (356)
                      + |++.+.+..+..++..+.....||
T Consensus       176 g-~~~~~~~~~~~~~~~~~~~~~~~~  200 (392)
T PRK12382        176 G-FAALALTTMVLPLLAWAFNGTVRK  200 (392)
T ss_pred             C-hHHHHHHHHHHHHHHHHHHHhccC
Confidence            7 998777655544433333333444

>PRK10054 putative transporter; Provisional

Probab=99.78  E-value=2.1e-17  Score=152.03  Aligned_cols=171  Identities=14%  Similarity=0.118  Sum_probs=141.6

Q ss_pred             HHHHHHHHhhhhcchhhHH-HHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHH
Q 018408           93 SMSNFLFGYHIGVMNGPIV-SIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIIS  171 (356)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~  171 (356)
                      .+..+..........+.+| ++.+++|+  +..+.|++.+.+.+++.+++++.|+++||+|||++++++.++.+++.++.
T Consensus        13 ~~~~~~~~~g~~~~~~~l~~~l~~~~g~--s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~   90 (395)
T PRK10054         13 LASSLLLTIGRGATLPFMTIYLSRQYSL--SVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAI   90 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHH
Confidence            3344444555555555554 56678898  67779999999999999999999999999999999999999999999888


Q ss_pred             HHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhH
Q 018408          172 AQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIAS  251 (356)
Q Consensus       172 ~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~  251 (356)
                      ++.++++.+++++++.|.+.+...+....+..|.+|+++|++++++.+...++|.+++|.+++.+.+ .+ |+..|++.+
T Consensus        91 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g-~~~~f~~~~  168 (395)
T PRK10054         91 PLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QS-INLPFWLAA  168 (395)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hc-cCcHHHHHH
Confidence            9999999888889888888887788888999999999999999999999999999999999998774 45 999999887


Q ss_pred             HHHHHHHHHh-hcccCC
Q 018408          252 LPGFILALGM-QFTVES  267 (356)
Q Consensus       252 ~~~~~~~~~~-~~~~e~  267 (356)
                      +..++..+.. +++|+.
T Consensus       169 ~~~~i~~i~~~~~~~~~  185 (395)
T PRK10054        169 ICSAFPLVFIQIWVQRS  185 (395)
T ss_pred             HHHHHHHHHHHHHHhcc
Confidence            7766664433 345544

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.78  E-value=3.6e-17  Score=150.74  Aligned_cols=162  Identities=16%  Similarity=0.126  Sum_probs=138.1

Q ss_pred             hhhhcchhhH-HHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhhhHHH
Q 018408          101 YHIGVMNGPI-VSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDE  179 (356)
Q Consensus       101 ~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~  179 (356)
                      .......+.+ +++.+++|+  +..+.|++.+...++..+..++.|+++||+|||++++.+.++.+++.+++.+.++++.
T Consensus        24 ~~~~~~~~~~~~~~~~~~g~--s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~  101 (400)
T PRK11646         24 LGFFVVFPLISIRFVDQLGW--AAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWL  101 (400)
T ss_pred             HHHHHHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            3333334444 356788898  6777999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHHHHHH
Q 018408          180 MLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILAL  259 (356)
Q Consensus       180 ~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~  259 (356)
                      +++.|++.|++.+...+...+++.|++|+++|++++++......+|..++|.+++.+. ..+ |++.|++.++..++..+
T Consensus       102 l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g-~~~~f~~~~~~~~~~~i  179 (400)
T PRK11646        102 LWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYD-FRLVCATGAVLFVLAAA  179 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh-HHHHHHHHHHHHHHHHH
Confidence            9999999999998888888999999999999999999999999999999999999887 556 99999987776665543


Q ss_pred             H-hhcccC
Q 018408          260 G-MQFTVE  266 (356)
Q Consensus       260 ~-~~~~~e  266 (356)
                      . .++.||
T Consensus       180 ~~~~~~~~  187 (400)
T PRK11646        180 FNAWLLPA  187 (400)
T ss_pred             HHHHhCCc
Confidence            3 344554

>TIGR00897 2A0118 polyol permease family

Probab=99.78  E-value=4.3e-17  Score=150.44  Aligned_cols=144  Identities=16%  Similarity=0.110  Sum_probs=119.6

Q ss_pred             chhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHH---H-hhhHHHHH
Q 018408          106 MNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISA---Q-AHSLDEML  181 (356)
Q Consensus       106 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~---~-~~~~~~~~  181 (356)
                      ....++.+.+++|.  +..+.+++.+.+.+++.++.++.|+++||+|||+++..+.++.+++.+++.   . .++++.++
T Consensus        32 ~~~~~~~~~~~~g~--s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~  109 (402)
T TIGR00897        32 EQGWLSPFLKALGL--SPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLIL  109 (402)
T ss_pred             HHHhHHHHHHHhCC--CHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHH
Confidence            33445556688888  667799999999999999999999999999999999999999888876543   2 25788888


Q ss_pred             HHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHH-HHHHHhhhccCCCCchhHHHHHHhHH
Q 018408          182 WGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGI-ITSLFLGIPAEDDPHWWRTMLYIASL  252 (356)
Q Consensus       182 ~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~-~~~~~i~~~l~~~~~~w~~~~~~~~~  252 (356)
                      +.|++.|++.+...+.....+.+.+|+++|++++|+.+.+..+|. .+++.+++.+.+..+ |+..++....
T Consensus       110 ~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g-~~~~~~~~~~  180 (402)
T TIGR00897       110 LFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFG-EMNTLWSALA  180 (402)
T ss_pred             HHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-hHHHHHHHHH
Confidence            999999999888877778888999999999999999999999996 588999888887777 6655554433

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.78  E-value=3.2e-17  Score=151.55  Aligned_cols=177  Identities=21%  Similarity=0.200  Sum_probs=147.0

Q ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHhCCCCChh---HHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHH
Q 018408           89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPI---LEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLI  165 (356)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~  165 (356)
                      ...+.++.+..+.......+.+|.+.+++|.+..+.   ..+++.+++.++..++.++.|+++||+|||++++.+.++.+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   95 (408)
T PRK09874         16 LTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMG   95 (408)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHH
Confidence            344455566667777777888899999998864332   34888899999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHH
Q 018408          166 LGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRT  245 (356)
Q Consensus       166 i~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~  245 (356)
                      ++.+++.+.++++.+++.|++.|++.+ ..+....++.+.+|+++|++++++.+.+..+|..+++.+++.+.+..+ |++
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~  173 (408)
T PRK09874         96 IVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYG-LRP  173 (408)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-HHH
Confidence            999888888999999999999999765 456777788999999999999999999999999999999999888777 999


Q ss_pred             HHHHhHHHHHHHHHH-hhcccCC
Q 018408          246 MLYIASLPGFILALG-MQFTVES  267 (356)
Q Consensus       246 ~~~~~~~~~~~~~~~-~~~~~e~  267 (356)
                      .|++.++..++..+. .++.+|.
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~  196 (408)
T PRK09874        174 VFFITASVLFLCFLVTLFCIREN  196 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccC
Confidence            999887776655543 3445554

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.78  E-value=1.3e-17  Score=156.59  Aligned_cols=164  Identities=21%  Similarity=0.276  Sum_probs=134.0

Q ss_pred             HHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHH
Q 018408           93 SMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISA  172 (356)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~  172 (356)
                      ++......+........++.+..++|-+   ....|+.+...++..++.++.|.++|.+|||.+++.+.++..+++++++
T Consensus        50 ~~~~~~~~~~~~~~a~~l~~I~~diG~~---~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~a  126 (599)
T PF06609_consen   50 SLAVIAAYFVLVLPASILPYINADIGGS---DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCA  126 (599)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHhcCCC---ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhh
Confidence            3333334445555667778999999864   2367899999999999999999999999999999999999999999999


Q ss_pred             HhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHH
Q 018408          173 QAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASL  252 (356)
Q Consensus       173 ~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~  252 (356)
                      .++|...++++..+.|++.|.... ....++|..|.+.|+.+.++......+...+++.++..+..+.+ |||.|++.++
T Consensus       127 tA~~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~-WRw~~~~~~i  204 (599)
T PF06609_consen  127 TAQNMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSG-WRWIFYIFII  204 (599)
T ss_pred             cCCcHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCC-cchHHHHHHH
Confidence            999999999999999999877754 45568999999999988887777666666677788776665555 9999999888


Q ss_pred             HHHHHHHHh
Q 018408          253 PGFILALGM  261 (356)
Q Consensus       253 ~~~~~~~~~  261 (356)
                      ...+.++..
T Consensus       205 ~~~i~~vl~  213 (599)
T PF06609_consen  205 WSGIALVLI  213 (599)
T ss_pred             HHHHHHHHH
Confidence            777665443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.78  E-value=3.1e-18  Score=158.90  Aligned_cols=170  Identities=17%  Similarity=0.114  Sum_probs=142.2

Q ss_pred             HHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHH--
Q 018408           96 NFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQ--  173 (356)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~--  173 (356)
                      .+...+........+|.+.++++.  +..+.|++.+.+.+++.++.++.|+++||+|||+++..+.++.+++.+..+.  
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~  103 (417)
T PRK10489         26 RFISIFGLGLLGVAVPVQIQMMTG--STLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNA  103 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHH
Confidence            344444555666777888888877  6777999999999999999999999999999999998888777776655432  


Q ss_pred             ---hhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHh
Q 018408          174 ---AHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIA  250 (356)
Q Consensus       174 ---~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~  250 (356)
                         .++++.+++.|++.|++.+...+....++.|++|+++|+++.++.+....+|..+++.+++.+.+..+ |++.|++.
T Consensus       104 ~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~-~~~~~~~~  182 (417)
T PRK10489        104 FLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGG-VAWNYGLA  182 (417)
T ss_pred             HcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHh-hHHHHHHH
Confidence               45788888999999999888888888899999999999999999999999999999999998887767 99999988


Q ss_pred             HHHHHHHHHHhhcccCCh
Q 018408          251 SLPGFILALGMQFTVESP  268 (356)
Q Consensus       251 ~~~~~~~~~~~~~~~e~p  268 (356)
                      ++..++..+..+.+|+++
T Consensus       183 ~~~~~~~~~~~~~l~~~~  200 (417)
T PRK10489        183 AAGTFITLLPLLRLPALP  200 (417)
T ss_pred             HHHHHHHHHHHHhCCCCC
Confidence            777776666666677653

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.77  E-value=5.1e-17  Score=148.43  Aligned_cols=171  Identities=15%  Similarity=0.061  Sum_probs=137.8

Q ss_pred             HHHHHHhhhhcchhhHHH-HHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHH-hHHHHHHHHHHHH
Q 018408           95 SNFLFGYHIGVMNGPIVS-IAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQI-DTIPLILGAIISA  172 (356)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~-~~~~~~i~~~~~~  172 (356)
                      .++..++......+.+|. +.+++|.  +..+.+++.+.+.++..+..++.|+++||+|||+.++. +.++.+++.++++
T Consensus         5 ~~~~~~~~~~~~~~~l~~~l~~~~g~--s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~   82 (375)
T TIGR00899         5 VAFLTGIAGALQFPTLSLFLSEEVRA--RPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFA   82 (375)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHcccCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHH
Confidence            355666666667777765 5678898  66779999999999999999999999999999887655 5566667777888


Q ss_pred             HhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchh--HHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHh
Q 018408          173 QAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSL--GTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIA  250 (356)
Q Consensus       173 ~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~--~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~  250 (356)
                      ++++++.+++.|++.|.+.+...+....+..|+.|++.|+..  .+....+..+|..+++.+++.+.+..+ ||+.|++.
T Consensus        83 ~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~-~~~~f~~~  161 (375)
T TIGR00899        83 WNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFG-FTVMFLTA  161 (375)
T ss_pred             hcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcc-cHHHHHHH
Confidence            889999999999999888887888888888898887777654  577788889999999999999888777 99999998


Q ss_pred             HHHHHHHHHH-hhcccCCh
Q 018408          251 SLPGFILALG-MQFTVESP  268 (356)
Q Consensus       251 ~~~~~~~~~~-~~~~~e~p  268 (356)
                      ++..++..+. .+++||.|
T Consensus       162 ~~~~~~~~~~~~~~~~~~~  180 (375)
T TIGR00899       162 ALAFVLCGVLVWLFLPSYP  180 (375)
T ss_pred             HHHHHHHHHHHHHhCCCcc
Confidence            8776665544 44578765

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00896 CynX cyanate transporter

Probab=99.77  E-value=4e-17  Score=148.18  Aligned_cols=149  Identities=21%  Similarity=0.293  Sum_probs=128.8

Q ss_pred             hcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhhhHHHHHHH
Q 018408          104 GVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWG  183 (356)
Q Consensus       104 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  183 (356)
                      ....+.+|.+.+++|+  +..+.+++.+.+.+++.++.++.|+++||+|||+++.++.++..++.+.. ..++.+.+++.
T Consensus        17 ~~~~~~lp~l~~~~~~--s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~   93 (355)
T TIGR00896        17 TSVGPLLPQIRSALGM--SFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAG   93 (355)
T ss_pred             ccCcccHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHH
Confidence            4567788999999999  56679999999999999999999999999999999999998888887777 77888899999


Q ss_pred             HHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCch-hHHHHHHhHHHHHH
Q 018408          184 RFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHW-WRTMLYIASLPGFI  256 (356)
Q Consensus       184 ~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~-w~~~~~~~~~~~~~  256 (356)
                      |++.|++.+...+....++.|++| ++|++++++++.+..+|..+++.+.+.+.+..+. ||+.|.+.++..++
T Consensus        94 ~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~  166 (355)
T TIGR00896        94 TALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALL  166 (355)
T ss_pred             HHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence            999999999888888888899886 5799999999999999999999988877765432 99888776654443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PTZ00207 hypothetical protein; Provisional

Probab=99.77  E-value=2.2e-16  Score=149.09  Aligned_cols=175  Identities=13%  Similarity=0.087  Sum_probs=130.7

Q ss_pred             chhHHHHHHHHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHH
Q 018408           83 LPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTI  162 (356)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~  162 (356)
                      .++|..+....+.....+.. ..++...+.+.+++|+  +..+.+++.++. ....++.++.|+++||+|+|++++++.+
T Consensus        24 ~~Rw~~lva~~~~~~~~g~~-y~fsv~s~~L~~~lgl--s~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~l   99 (591)
T PTZ00207         24 PRRFALLVLGAFCSICTSFM-YAFNLISGAMQARYNL--TQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMT   99 (591)
T ss_pred             cchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCc--CHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence            34555444444333333322 3344566788999999  566678777663 3445677789999999999999999999


Q ss_pred             HHHHHHHHHHHh------hhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHH-HHHhhhc
Q 018408          163 PLILGAIISAQA------HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIIT-SLFLGIP  235 (356)
Q Consensus       163 ~~~i~~~~~~~~------~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~-~~~i~~~  235 (356)
                      ++++++++++++      ++++.+.+.|++.|++.+...+.....+.++|| ++||+++|+...+..+|+++ +++..++
T Consensus       100 l~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l  178 (591)
T PTZ00207        100 VFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAF  178 (591)
T ss_pred             HHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999987      689999999999999999988888999999997 67999999999999999975 4444444


Q ss_pred             cCCCCchhHHHHHHhHHHHHHHHH-Hhhccc
Q 018408          236 AEDDPHWWRTMLYIASLPGFILAL-GMQFTV  265 (356)
Q Consensus       236 l~~~~~~w~~~~~~~~~~~~~~~~-~~~~~~  265 (356)
                      +.  .+ |+..|++.+++.++..+ .+.+++
T Consensus       179 ~~--~~-~~~~fl~l~vl~~vv~ll~~~~vr  206 (591)
T PTZ00207        179 FS--DN-TSAYFFFLMSFALVVGILAIVFMR  206 (591)
T ss_pred             HH--Hh-HHHHHHHHHHHHHHHHHHHHhhee
Confidence            43  23 77777776666555544 344443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.76  E-value=5e-17  Score=149.11  Aligned_cols=170  Identities=19%  Similarity=0.286  Sum_probs=130.1

Q ss_pred             HHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHH--H---HHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHH
Q 018408           98 LFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSI--F---IAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISA  172 (356)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~---~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~  172 (356)
                      ...++...++...+.+.+++..+.++.+.+.+.+.  +   .++..+++++.|+++||+|||+++.++.++..++.++++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~   83 (394)
T TIGR00883         4 VEWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIG   83 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence            34555556666666776665542234444444332  2   233346889999999999999999999999999999999


Q ss_pred             HhhhHH--------HHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccC-------
Q 018408          173 QAHSLD--------EMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAE-------  237 (356)
Q Consensus       173 ~~~~~~--------~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~-------  237 (356)
                      +++++.        .+++.|+++|++.+...+....++.|++|+++|++..++.+.+..+|..+++.++..+.       
T Consensus        84 ~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~  163 (394)
T TIGR00883        84 LLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDA  163 (394)
T ss_pred             hCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence            988765        47788999999999999999999999999999999999999999999999988765543       


Q ss_pred             -CCCchhHHHHHHhHHHHHHHHHHhhcccCCh
Q 018408          238 -DDPHWWRTMLYIASLPGFILALGMQFTVESP  268 (356)
Q Consensus       238 -~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~p  268 (356)
                       +..+ ||+.|++.++..++..+.....+|++
T Consensus       164 ~~~~~-w~~~~~~~~~~~~~~~~~~~~~~~~~  194 (394)
T TIGR00883       164 LLEWG-WRIPFLVSAVLVLIGLYLRRNLEETP  194 (394)
T ss_pred             hhccc-hHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence             2345 99999887776666655555566664

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.75  E-value=3.4e-17  Score=147.73  Aligned_cols=172  Identities=33%  Similarity=0.497  Sum_probs=153.1

Q ss_pred             HHHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHH
Q 018408           91 IASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAII  170 (356)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~  170 (356)
                      .+.+..+...+......+..|.+.+++|.  +..+.+++.+...++..++.++.|+++||+|||+.+.++.++..++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~   80 (352)
T cd06174           3 LLFLGFFLSGLDRGLLSPALPLLAEDLGL--SASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLL   80 (352)
T ss_pred             HHHHHHHHHHHhhhhhHhhHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHH
Confidence            34455666777777888888999999888  6667999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHh
Q 018408          171 SAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIA  250 (356)
Q Consensus       171 ~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~  250 (356)
                      ..+.++++.+++.|++.|++.+...+....++.|++|+++|++.+++.+.+..+|..+++.+++.+.+..+ |++.+++.
T Consensus        81 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~  159 (352)
T cd06174          81 LAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLG-WRWLFLIL  159 (352)
T ss_pred             HHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999988777 99999988


Q ss_pred             HHHHHHHHHHhhccc
Q 018408          251 SLPGFILALGMQFTV  265 (356)
Q Consensus       251 ~~~~~~~~~~~~~~~  265 (356)
                      ++..++..+...+++
T Consensus       160 ~~~~~~~~~~~~~~~  174 (352)
T cd06174         160 AILGLLLALLLLFLL  174 (352)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            777776665544443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.75  E-value=5.9e-18  Score=149.85  Aligned_cols=189  Identities=22%  Similarity=0.291  Sum_probs=149.3

Q ss_pred             chhHHHHHHHHHHHHHHHhhhhcchhhHHHHHHHh-CCC-----CChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHH
Q 018408           83 LPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKEL-GFE-----GNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRT  156 (356)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~-----~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~  156 (356)
                      |+..+.+.++.++.+.++|+...++...+.+...+ +-+     ..+...+.+..+.++|.++|++++|++.|++|||++
T Consensus        37 w~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~v  116 (538)
T KOG0252|consen   37 WKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKV  116 (538)
T ss_pred             HHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhh
Confidence            45556677888999999999999999888776654 221     233447788899999999999999999999999999


Q ss_pred             HHHhHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHH---
Q 018408          157 FQIDTIPLILGAIISAQAH-------SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGI---  226 (356)
Q Consensus       157 ~~~~~~~~~i~~~~~~~~~-------~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~---  226 (356)
                      +...+++++++++++++..       -+.++...|+++|+|.|+-+|...+..+|....+.||..++...+...+|.   
T Consensus       117 YG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG  196 (538)
T KOG0252|consen  117 YGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAG  196 (538)
T ss_pred             hhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhc
Confidence            9999999999999777642       246677889999999999999999999999999999998887544444433   


Q ss_pred             -HHHHHhhhccCCCC----------chhHHHHHHhHHHHHHHHHHhhcccCChHHH
Q 018408          227 -ITSLFLGIPAEDDP----------HWWRTMLYIASLPGFILALGMQFTVESPRWL  271 (356)
Q Consensus       227 -~~~~~i~~~l~~~~----------~~w~~~~~~~~~~~~~~~~~~~~~~e~p~~~  271 (356)
                       +++-++...+....          +-||..+.+++++.++.....+.+|||+++.
T Consensus       197 ~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~  252 (538)
T KOG0252|consen  197 GIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYT  252 (538)
T ss_pred             cHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHH
Confidence             33333333222211          1399999999999998888888899999885

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.75  E-value=3.4e-17  Score=141.77  Aligned_cols=116  Identities=24%  Similarity=0.287  Sum_probs=108.1

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHH
Q 018408          122 NPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIY  201 (356)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~  201 (356)
                      +....|++.+.+.++..+.++.+|.++||+|||.+++++++..++...+.+.+.|+..+++.|++.|+.-|.. .+..++
T Consensus        66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl-~v~rAi  144 (451)
T KOG2615|consen   66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNL-SVIRAI  144 (451)
T ss_pred             cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCch-HHHHHH
Confidence            4556899999999999999999999999999999999999999999999999999977777799999998765 667789


Q ss_pred             HHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCC
Q 018408          202 ISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAED  238 (356)
Q Consensus       202 ~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~  238 (356)
                      ++|.+++++|+.+++.....+.+|.++||.+++++..
T Consensus       145 isdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  145 ISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             HHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence            9999999999999999999999999999999999887

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.74  E-value=2.5e-16  Score=138.05  Aligned_cols=228  Identities=18%  Similarity=0.185  Sum_probs=186.1

Q ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHH
Q 018408           89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA  168 (356)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~  168 (356)
                      ...+...+++.++........+|.+++.+++  +..+++++...++.|+.+++++.|++.+|+|+|+.+++|+.++++++
T Consensus        15 ~v~~t~lFfl~G~~~~l~diLip~l~~~f~l--s~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~   92 (422)
T COG0738          15 FVLLTSLFFLWGFITCLNDILIPHLKEVFDL--TYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGA   92 (422)
T ss_pred             HHHHHHHHHHHHHHhhcchhhHHHHHHHhCc--cHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            4555666778888888889999999999999  67779999999999999999999999999999999999999999999


Q ss_pred             HHHH---HhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCC------
Q 018408          169 IISA---QAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDD------  239 (356)
Q Consensus       169 ~~~~---~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~------  239 (356)
                      .++.   ...++..++++-++.|.|.+...+..+.+++.+.+++.-...+.+.+.++.+|.+++|++++.+..+      
T Consensus        93 ~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~  172 (422)
T COG0738          93 ALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTM  172 (422)
T ss_pred             HHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhcc
Confidence            9885   4568889999999999999999999999999999998888999999999999999999999987763      


Q ss_pred             ------------CchhHHHHHHhHHHHHHHHHHhhcc--cCChHHHHhcCCHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Q 018408          240 ------------PHWWRTMLYIASLPGFILALGMQFT--VESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIK  305 (356)
Q Consensus       240 ------------~~~w~~~~~~~~~~~~~~~~~~~~~--~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (356)
                                  ...|++.|...+...++..+.....  |+.+                       +          ...
T Consensus       173 ~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~-----------------------~----------~~~  219 (422)
T COG0738         173 SAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQ-----------------------V----------AAP  219 (422)
T ss_pred             CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCC-----------------------c----------ccc
Confidence                        1136777777666655555444332  2220                       0          000


Q ss_pred             hcCCCCccchhhhcccCcchhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 018408          306 KDGSDLDSQWSELLEEPHSRVAFIGDGALASLLVGVTNFAGLRSEK  351 (356)
Q Consensus       306 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (356)
                      ++.+..+....+++++|.++...++...|+++.+.+.+++.+++.-
T Consensus       220 ~~~~~~~~~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~  265 (422)
T COG0738         220 SLGASGSAGLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEE  265 (422)
T ss_pred             cccccccchHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence            1111111257889999999999999999999999999999888754

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.74  E-value=9.7e-17  Score=150.92  Aligned_cols=173  Identities=18%  Similarity=0.171  Sum_probs=136.9

Q ss_pred             HHHHHHHHHHHHhhhhcchhhH-HHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhh-hchhHHHHHhHHHHHH
Q 018408           89 VLIASMSNFLFGYHIGVMNGPI-VSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADK-LGCRRTFQIDTIPLIL  166 (356)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~i  166 (356)
                      ++.+.+..+...+..+.....+ .++.+++|+  +....+++.+.+.....+..+++|+++|| +|||++++++.+++++
T Consensus        16 ~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~--~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~   93 (489)
T PRK10207         16 FFMIFFVELWERFGYYGVQGILAVFFVKQLGF--SQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAI   93 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHH
Confidence            3444444444555544444444 466778888  55557888888888888888899999999 9999999999999999


Q ss_pred             HHHHHHHhhhHHH-HHHHHHHHHhhhhhhhhHHHHHHHhhcCCC--ccchhHHHhHHHHHHHHHHHHHhhhccCCCCchh
Q 018408          167 GAIISAQAHSLDE-MLWGRFLVGLGIGVNTVLVPIYISEVAPTK--YRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWW  243 (356)
Q Consensus       167 ~~~~~~~~~~~~~-~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~--~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w  243 (356)
                      +.++++++.+... ++++|+++|++.|...+...+++.|.+|++  +|+.+.++++.+.++|.+++|.+++++.++.| |
T Consensus        94 g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~g-w  172 (489)
T PRK10207         94 GYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFG-Y  172 (489)
T ss_pred             HHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhC-h
Confidence            9999988876444 557899999999999999999999999887  45778999999999999999999999999888 9


Q ss_pred             HHHHHHhHHHHHHHHHHhhcc
Q 018408          244 RTMLYIASLPGFILALGMQFT  264 (356)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~  264 (356)
                      ++.|++.++..++.++.+.+.
T Consensus       173 ~~~F~i~~i~~~~~~~~~~~~  193 (489)
T PRK10207        173 SVTYNLCGAGLIIALLVYFAC  193 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHc
Confidence            999998755444444433333

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.73  E-value=8.6e-16  Score=145.06  Aligned_cols=175  Identities=15%  Similarity=0.178  Sum_probs=138.5

Q ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhh-----chhHH-HHHhHH
Q 018408           89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKL-----GCRRT-FQIDTI  162 (356)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----Grr~~-~~~~~~  162 (356)
                      .+.+.+..+..+.........+|.+.++.|.  +..+.+.. +.....+ ++.+++|+++||+     |||+. ++++.+
T Consensus        14 ~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~--~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i   89 (491)
T PRK11010         14 SAILLILGFASGLPLALTSGTLQAWMTVENI--DLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQL   89 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHH
Confidence            3444555556666666777788888888888  45456664 3333333 6889999999999     99986 556777


Q ss_pred             HHHHHHHHHHHh---hhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCC
Q 018408          163 PLILGAIISAQA---HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDD  239 (356)
Q Consensus       163 ~~~i~~~~~~~~---~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~  239 (356)
                      +.+++..++++.   ++++.+.+.+++.|++.+...+...++..|++|+++|+++.++...+..+|.++++.++..+.++
T Consensus        90 ~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~  169 (491)
T PRK11010         90 LLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADR  169 (491)
T ss_pred             HHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            777777777665   46778888999999999999999999999999999999999999999999999999999888874


Q ss_pred             -CchhHHHHHHhHHHHHHHHHHhhcccCCh
Q 018408          240 -PHWWRTMLYIASLPGFILALGMQFTVESP  268 (356)
Q Consensus       240 -~~~w~~~~~~~~~~~~~~~~~~~~~~e~p  268 (356)
                       .| ||..|++.++..++..+..+++||++
T Consensus       170 ~~G-Wr~~f~i~a~l~ll~~l~~~~~~e~~  198 (491)
T PRK11010        170 YLG-WQGMYWLMAALLIPCIIATLLAPEPT  198 (491)
T ss_pred             ccC-HHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence             46 99999998877777766666677764

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.73  E-value=1.6e-16  Score=149.33  Aligned_cols=171  Identities=16%  Similarity=0.157  Sum_probs=143.1

Q ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHH-H--hCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhh-hchhHHHHHhHHHHH
Q 018408           90 LIASMSNFLFGYHIGVMNGPIVSIAK-E--LGFEGNPILEGLVVSIFIAGAFVGSISSGSLADK-LGCRRTFQIDTIPLI  165 (356)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~  165 (356)
                      +.+.+..+...+..+...+.+|.+.+ +  +|+  +..+.+++.+.+.+++.++.+++|+++|| +|||+++.++.++.+
T Consensus        13 ~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~--s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~   90 (475)
T TIGR00924        13 FTLFFVELWERFSYYGMQGILAVYLVQQAGLGF--SQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLM   90 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC--CHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHH
Confidence            44444555555555555666665544 4  677  67779999999999999999999999999 899999999999999


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCc---cchhHHHhHHHHHHHHHHHHHhhhccCCCCch
Q 018408          166 LGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKY---RGSLGTLCQVGTCLGIITSLFLGIPAEDDPHW  242 (356)
Q Consensus       166 i~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~---r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~  242 (356)
                      ++.++.++++++..+++++++.|++.|...+...++++|++|+++   |+.+.++++.+.++|.+++|.+++.+.++.+ 
T Consensus        91 ~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g-  169 (475)
T TIGR00924        91 LGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYG-  169 (475)
T ss_pred             HHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence            999999998888888899999999999998999999999998764   8889999999999999999999999988878 


Q ss_pred             hHHHHHHhHHHHHHHHHHhhc
Q 018408          243 WRTMLYIASLPGFILALGMQF  263 (356)
Q Consensus       243 w~~~~~~~~~~~~~~~~~~~~  263 (356)
                      |++.|++.++..+++.+..++
T Consensus       170 ~~~~f~~~~~~~~~~~l~~~~  190 (475)
T TIGR00924       170 YHVGFNLAAVGMVIGLLTFFA  190 (475)
T ss_pred             hHHHHHHHHHHHHHHHHHHHH
Confidence            999999877665555444433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.73  E-value=2.7e-16  Score=163.67  Aligned_cols=161  Identities=14%  Similarity=-0.009  Sum_probs=127.5

Q ss_pred             hhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHH---HhhhHHHHHHHH
Q 018408          108 GPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISA---QAHSLDEMLWGR  184 (356)
Q Consensus       108 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~  184 (356)
                      ...+.+..+++.+.+....+++.+++.+++.++++++|+++||+|||++++++.++.+++.++..   ..++++.++++|
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r  110 (1146)
T PRK08633         31 LIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVT  110 (1146)
T ss_pred             HHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence            34455666777755566678999999999999999999999999999999988876665555443   456889999999


Q ss_pred             HHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCC--------CchhHHHHHHhH-HHHH
Q 018408          185 FLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDD--------PHWWRTMLYIAS-LPGF  255 (356)
Q Consensus       185 ~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~--------~~~w~~~~~~~~-~~~~  255 (356)
                      ++.|++.+...+...+++.|++|+++|++++++..++..+|.++++.+++++.+.        .++|.+.+.+.+ +..+
T Consensus       111 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (1146)
T PRK08633        111 FLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAV  190 (1146)
T ss_pred             HHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999988765        232444444433 3333


Q ss_pred             HHHHHhhcccCCh
Q 018408          256 ILALGMQFTVESP  268 (356)
Q Consensus       256 ~~~~~~~~~~e~p  268 (356)
                      +.++..+++|++|
T Consensus       191 ~~~~~~~~~~~~~  203 (1146)
T PRK08633        191 LGLIFAYRLPKVP  203 (1146)
T ss_pred             HHHHHHhcCcCCC
Confidence            4444455677765

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.73  E-value=2.1e-16  Score=139.41  Aligned_cols=226  Identities=16%  Similarity=0.089  Sum_probs=171.3

Q ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHH
Q 018408           89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA  168 (356)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~  168 (356)
                      +++-.+......+.....++..+.+.+++|+  |+.|.+++.++..+...+..++.|.+.||+|.|++.+++.++..+.+
T Consensus        16 L~~S~~af~v~F~VW~l~s~l~~~i~~~~~L--S~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~   93 (417)
T COG2223          16 LWLSTLAFDVGFMVWTLFSPLGVFIKSDFGL--SEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPC   93 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccccCC--CHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHH
Confidence            3333333333334445556666788899999  67779999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhH---HHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCc--hh
Q 018408          169 IISAQAHSL---DEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPH--WW  243 (356)
Q Consensus       169 ~~~~~~~~~---~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~--~w  243 (356)
                      +..+++.+.   +.+++++++.|++.+. +++...+++.+||++++|.++|++. ..++|..+..+++..+....+  .|
T Consensus        94 ~~~~~a~~~~~~~~ll~~gll~G~~Gas-Fav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w  171 (417)
T COG2223          94 LGLAFAVTYPSTWQLLVIGLLLGLAGAS-FAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAW  171 (417)
T ss_pred             HHHHHHccCCchHHHHHHHHHHhcccce-ehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHH
Confidence            999988544   5999999999997755 4777779999999999999999998 888888888888777776655  38


Q ss_pred             HHHHHHhHHHHHHHHH-HhhcccCChHHHHhcCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCccchhhhcccC
Q 018408          244 RTMLYIASLPGFILAL-GMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEP  322 (356)
Q Consensus       244 ~~~~~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  322 (356)
                      +.+..+..+..++..+ .++++.+.|......                               ++..  ...++.+++++
T Consensus       172 ~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~-------------------------------~~~~--~~~~~~v~~~~  218 (417)
T COG2223         172 RNVAGIYVVALAIAAVLAWLGMNDVPEHRASV-------------------------------KPQL--PAQLKAVFSNK  218 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCChhhhccc-------------------------------cccc--hhHHHHHhcCc
Confidence            8888877766666544 445555554210000                               0000  03466788899


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 018408          323 HSRVAFIGDGALASLLVGVTNFAGLRSEK  351 (356)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (356)
                      +.|.+.+.+....+..++..++++.+..-
T Consensus       219 ~~W~lsllY~~tFG~Fvgfs~~l~~~~~~  247 (417)
T COG2223         219 DTWLLSLLYFATFGGFVGFSAYLPMYLVT  247 (417)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999988888888888887776643

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.72  E-value=2e-15  Score=139.34  Aligned_cols=171  Identities=17%  Similarity=0.161  Sum_probs=139.6

Q ss_pred             HHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhh-----chhH-HHHHhHHHHHH
Q 018408           93 SMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKL-----GCRR-TFQIDTIPLIL  166 (356)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----Grr~-~~~~~~~~~~i  166 (356)
                      ...++.++...+.....+|.+.++.|+  +..+.|++..+...  .+..+++|+++||+     |||| .++++.++.++
T Consensus         5 ~~l~~~~~~~~~~~~~~~~~~l~~~g~--~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l   80 (402)
T PRK11902          5 LLLGFASGLPLALTSGTLQAWMTVEGL--DIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAA   80 (402)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHH
Confidence            344566777777788888999999999  66679988776664  58899999999999     8876 67778888887


Q ss_pred             HHHHHHHh---hhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCC-ch
Q 018408          167 GAIISAQA---HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP-HW  242 (356)
Q Consensus       167 ~~~~~~~~---~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~-~~  242 (356)
                      +....++.   .+++.+++..++.+++.+...+...+++.|++|+++|+++.++...+..+|..+++.++..+.+.. + 
T Consensus        81 ~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~g-  159 (402)
T PRK11902         81 SIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLG-  159 (402)
T ss_pred             HHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccC-
Confidence            77777776   356777777778888888888999999999999999999999999999999999999888887754 5 


Q ss_pred             hHHHHHHhHHHHHHHHHHhhcccCCh
Q 018408          243 WRTMLYIASLPGFILALGMQFTVESP  268 (356)
Q Consensus       243 w~~~~~~~~~~~~~~~~~~~~~~e~p  268 (356)
                      ||..|++.++..++..+..++.||++
T Consensus       160 w~~~f~i~a~~~l~~~l~~~~~~e~~  185 (402)
T PRK11902        160 WGNTYLLMAGLMLAGALTTLWAPEPE  185 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            99999998877766655556677753

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.70  E-value=1.3e-15  Score=148.12  Aligned_cols=140  Identities=14%  Similarity=-0.025  Sum_probs=121.8

Q ss_pred             HHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhc
Q 018408          127 GLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVA  206 (356)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~  206 (356)
                      .+...+..++.+++.++.|+++||+|||++++++.++.++++++.++.++...+++++++.|++.++..+....+++|++
T Consensus       598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~  677 (742)
T TIGR01299       598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELY  677 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            34455667888999999999999999999999999999999999988888888888888999988888899999999999


Q ss_pred             CCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHHHHHHHhhcccCCh
Q 018408          207 PTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESP  268 (356)
Q Consensus       207 p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~p  268 (356)
                      |++.|++++|+.++...+|.+++|++++.+.+. + ....|++.+++.++++++.+++||+.
T Consensus       678 Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~-~~~pf~i~a~~lll~~ll~~~LPET~  737 (742)
T TIGR01299       678 PSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-T-KAAPILFASAALACGGLLALKLPDTR  737 (742)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h-hHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            999999999999999999999999999877654 2 45677777777777777777789873

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.70  E-value=7.6e-17  Score=140.48  Aligned_cols=153  Identities=16%  Similarity=0.156  Sum_probs=139.9

Q ss_pred             HHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhh
Q 018408          113 IAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIG  192 (356)
Q Consensus       113 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~G~~~g  192 (356)
                      ..++...+.++++.|++.+...+.+.+..++.|.+.||+|+|..+++|++.+...++++++.++++.++++|.++|++.+
T Consensus        95 ~~~~~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA  174 (464)
T KOG3764|consen   95 PAEAISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSA  174 (464)
T ss_pred             chhccCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHH
Confidence            34444555567789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHhhcCCCc-cchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHHHHHHHhhcccC
Q 018408          193 VNTVLVPIYISEVAPTKY-RGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVE  266 (356)
Q Consensus       193 ~~~~~~~~~~~e~~p~~~-r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e  266 (356)
                      ...+...+++++.||.++ |++++|+.-.+.++|..+||.+++.+.+..| .+..|++.++++++-..+.+++-|
T Consensus       175 ~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~G-k~aPFlVL~~v~Lld~~L~l~vi~  248 (464)
T KOG3764|consen  175 FADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAG-KSAPFLVLAIVLLLDGALQLLVIE  248 (464)
T ss_pred             HHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcC-CcCcHHHHHHHHHHHHHHHHheeC
Confidence            999999999999999755 7999999999999999999999999999988 999999999999888777666544

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.69  E-value=1.6e-15  Score=157.61  Aligned_cols=143  Identities=19%  Similarity=0.168  Sum_probs=117.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHH---hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHH
Q 018408          124 ILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQI---DTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPI  200 (356)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~  200 (356)
                      ...++..+++.+.+.++++++|+++||+|||+++..   ..++.++..+.....++++.++++|+++|++.+...+...+
T Consensus        52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a  131 (1140)
T PRK06814         52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYS  131 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHH
Confidence            457788889999999999999999999999997643   22222222233334489999999999999999999999999


Q ss_pred             HHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHHHHHHHhhcccCC
Q 018408          201 YISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVES  267 (356)
Q Consensus       201 ~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~  267 (356)
                      ++.+++|+++|++++|+.+++..+|.+++|.+++++....+ |++.|+..++..++.+++.+++|++
T Consensus       132 ~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  197 (1140)
T PRK06814        132 ILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGN-FVILVALLMGIAVLGWLASLFIPKT  197 (1140)
T ss_pred             hhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHhhCCCC
Confidence            99999999999999999999999999999999999988877 9999866666666666666667765

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.69  E-value=2.6e-15  Score=137.66  Aligned_cols=159  Identities=14%  Similarity=-0.017  Sum_probs=125.1

Q ss_pred             HHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhH-HHHHHHH-H
Q 018408           92 ASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDT-IPLILGA-I  169 (356)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~-~~~~i~~-~  169 (356)
                      +.+.++..........+.+|.+.+++|.  +..+.|++.+.+.++..++++++|+++||+||+....... ....+.. .
T Consensus         9 l~~~~~~~~~~~~~~~p~l~~~l~~~g~--s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~   86 (382)
T TIGR00902         9 LALGFFGYFCAYGIFLPFFPAWLKGIGL--GEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAA   86 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence            4455566666667788889999999999  6777999999999999999999999999999854332221 1111222 2


Q ss_pred             HHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHH
Q 018408          170 ISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYI  249 (356)
Q Consensus       170 ~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~  249 (356)
                      ....+++++.+++.|.++|.+.+...+...++..++  .++|++..|....+.++|.+++|.+++.+.++.| ||..|++
T Consensus        87 ~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g-~~~~f~~  163 (382)
T TIGR00902        87 FSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFD-EQNILAI  163 (382)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcC-hhHHHHH
Confidence            334678899999999999998888888888777664  4778999999999999999999999999998888 9999888


Q ss_pred             hHHHHH
Q 018408          250 ASLPGF  255 (356)
Q Consensus       250 ~~~~~~  255 (356)
                      .++..+
T Consensus       164 ~~~~~~  169 (382)
T TIGR00902       164 LTAGLA  169 (382)
T ss_pred             HHHHHH
Confidence            665533

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.69  E-value=2.8e-15  Score=137.46  Aligned_cols=164  Identities=16%  Similarity=0.058  Sum_probs=125.4

Q ss_pred             HHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchh----HHHHHhHHHHHHHHHHH
Q 018408           96 NFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCR----RTFQIDTIPLILGAIIS  171 (356)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr----~~~~~~~~~~~i~~~~~  171 (356)
                      ++......+.+.+.+|.+.+++|.  +..+.|++.+++.++..++++++|+++||+||+    +.+.+...+.  .....
T Consensus        13 ~~~~~~~~g~~~p~l~~~l~~~g~--s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~   88 (382)
T PRK11128         13 YFGYFFAYGVFLPFWSVWLKGQGY--TPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFW   88 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHHhcCC--CHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHH
Confidence            444445567778888888899988  677799999999999999999999999999984    3332222221  12223


Q ss_pred             HHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhH
Q 018408          172 AQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIAS  251 (356)
Q Consensus       172 ~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~  251 (356)
                      ...++++.+++.|++.|++.+...+...++..++  .++|++..+....+..+|..++|.+++.+.++.+ ||..|++.+
T Consensus        89 ~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g-~~~~f~~~~  165 (382)
T PRK11128         89 FGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFG-EQAILWILT  165 (382)
T ss_pred             HhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcC-hhHHHHHHH
Confidence            3457899999999999999888888877777776  4568888998888899999999999999998888 999998877


Q ss_pred             HHHHHHHHHhhcccC
Q 018408          252 LPGFILALGMQFTVE  266 (356)
Q Consensus       252 ~~~~~~~~~~~~~~e  266 (356)
                      +..++..+..++.||
T Consensus       166 ~~~~~~~~~~~~~~~  180 (382)
T PRK11128        166 AGVASMLLGQLLRPT  180 (382)
T ss_pred             HHHHHHHHHHHccCC
Confidence            655544444444444

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.67  E-value=1.5e-14  Score=133.28  Aligned_cols=169  Identities=15%  Similarity=0.094  Sum_probs=120.4

Q ss_pred             HHHHHHHHHHHhhhhcchhhHHH-HHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHH
Q 018408           90 LIASMSNFLFGYHIGVMNGPIVS-IAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA  168 (356)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~  168 (356)
                      +.+....+........+.+.+|. +.+++|+  +..+.+++.+++.+++.+++++.|+++||+|||+.++.+....+++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~   82 (396)
T TIGR00882         5 WMFGLFFFLYFFIMSAYFPFFPIWLHDVNGL--SKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLF   82 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence            33344444444555556666654 4566888  67779999999999999999999999999999999988766665544


Q ss_pred             HHHH---Hhh-----hHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCC
Q 018408          169 IISA---QAH-----SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP  240 (356)
Q Consensus       169 ~~~~---~~~-----~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~  240 (356)
                      ....   +.+     ....+++.+++.|++.+...+....+..+..+  +++...+.......+|..+++.+++.+.+. 
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~-  159 (396)
T TIGR00882        83 APFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFSI-  159 (396)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhcc-
Confidence            3321   111     23344566788888888777777777766533  345566777788889999999998877653 


Q ss_pred             chhHHHHHHhHHHHHHHHHHhhcc
Q 018408          241 HWWRTMLYIASLPGFILALGMQFT  264 (356)
Q Consensus       241 ~~w~~~~~~~~~~~~~~~~~~~~~  264 (356)
                      + |++.|++.++..++..+..++.
T Consensus       160 ~-~~~~f~~~~~~~~~~~~~~~~~  182 (396)
T TIGR00882       160 D-PQIVFWLGSGFALILMLLLMFA  182 (396)
T ss_pred             C-chHHHHHHHHHHHHHHHHHHHh
Confidence            5 9999999887777666554443

>TIGR00901 2A0125 AmpG-related permease

Probab=99.66  E-value=1.7e-14  Score=130.91  Aligned_cols=160  Identities=16%  Similarity=0.155  Sum_probs=125.0

Q ss_pred             hcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhh-----chhHHH-HHhHHHHHHHHHHHHHh---
Q 018408          104 GVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKL-----GCRRTF-QIDTIPLILGAIISAQA---  174 (356)
Q Consensus       104 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----Grr~~~-~~~~~~~~i~~~~~~~~---  174 (356)
                      ...++..|.+.+++|+  +..+.++.... .+...+ .+++|+++||+     ||||.+ +.+.++.+++....++.   
T Consensus         5 ~~~~~~~~~~~~~~g~--s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~   80 (356)
T TIGR00901         5 GLVGNTLPYWLRSKNV--SLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPS   80 (356)
T ss_pred             hhHHhHHHHHHHHcCC--CHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcc
Confidence            3456677889999999  56668887654 344444 89999999998     899975 55677777776666666   


Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCc-------hhHHHH
Q 018408          175 HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPH-------WWRTML  247 (356)
Q Consensus       175 ~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~-------~w~~~~  247 (356)
                      .+.+.+.+..++.+++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+....+       +||..|
T Consensus        81 ~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f  160 (356)
T TIGR00901        81 TDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIF  160 (356)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHH
Confidence            4555666677788888888889999999999999999999999999999999999999887776544       299999


Q ss_pred             HHhHHHHHHHHHHhhc-ccCC
Q 018408          248 YIASLPGFILALGMQF-TVES  267 (356)
Q Consensus       248 ~~~~~~~~~~~~~~~~-~~e~  267 (356)
                      ++.++..++..+..++ .+|+
T Consensus       161 ~i~ai~~l~~~~~~~~~~~e~  181 (356)
T TIGR00901       161 FWTALLILPGLLVTLFLAKEP  181 (356)
T ss_pred             HHHHHHHHHHHHHHHHhccCC
Confidence            9988877766655443 4554

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.65  E-value=7.1e-15  Score=139.02  Aligned_cols=165  Identities=17%  Similarity=0.158  Sum_probs=127.1

Q ss_pred             HHHHHHHHHHhhhhcchhhH-HHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhh-hchhHHHHHhHHHHHHHH
Q 018408           91 IASMSNFLFGYHIGVMNGPI-VSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADK-LGCRRTFQIDTIPLILGA  168 (356)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~i~~  168 (356)
                      .+.+..+...+..+.....+ .++.+++|+  +..+.+++.+.+........+++|+++|| +|||++++++.++.+++.
T Consensus        25 ~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~--s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~  102 (500)
T PRK09584         25 LIFSIELWERFGYYGLQGIMAVYLVKQLGM--SEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGY  102 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence            33344444444444444444 455688998  45556777777665555666789999999 599999999999999998


Q ss_pred             HHHHHhh-hHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCc--cchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHH
Q 018408          169 IISAQAH-SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKY--RGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRT  245 (356)
Q Consensus       169 ~~~~~~~-~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~--r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~  245 (356)
                      +++++++ +...++++++++|++.|...+....++.|++|+++  |..++++++.+.++|..++|.+++++.+..| |++
T Consensus       103 ~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g-~~~  181 (500)
T PRK09584        103 ALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYG-WSV  181 (500)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhC-HHH
Confidence            8888864 45667778999999999888888899999998653  4567888899999999999999999988888 999


Q ss_pred             HHHHhHHHHHHHH
Q 018408          246 MLYIASLPGFILA  258 (356)
Q Consensus       246 ~~~~~~~~~~~~~  258 (356)
                      .|++.++..+++.
T Consensus       182 ~F~i~~i~~~i~~  194 (500)
T PRK09584        182 AFALSVVGMLITV  194 (500)
T ss_pred             HHHHHHHHHHHHH
Confidence            9998776555544

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.65  E-value=2.1e-15  Score=117.43  Aligned_cols=135  Identities=21%  Similarity=0.311  Sum_probs=118.8

Q ss_pred             HHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCc
Q 018408          131 SIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKY  210 (356)
Q Consensus       131 ~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~  210 (356)
                      +.+.++..++.++.|++.||+|||+.+..+..+..++.+.....++.+.+++.+++.|++.+...+....++.|.+|+++
T Consensus         5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   84 (141)
T TIGR00880         5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEE   84 (141)
T ss_pred             EeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhh
Confidence            44567788999999999999999999999999999998888888999999999999999999999999999999999999


Q ss_pred             cchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHHHHHHHhh-cccC
Q 018408          211 RGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQ-FTVE  266 (356)
Q Consensus       211 r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~e  266 (356)
                      |++.+++.+....+|..+++.+.+.+.+..+ |++.+++.++..++..+... +.||
T Consensus        85 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        85 RGVALGLMSAGIALGPLLGPPLGGVLAQFLG-WRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             hhHHHHHHHHhHHHHHHHhHHhHHHHhcccc-hHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            9999999999999999999999999888777 99998887777666655443 3444

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.64  E-value=1.5e-14  Score=134.62  Aligned_cols=169  Identities=14%  Similarity=0.139  Sum_probs=127.5

Q ss_pred             HHHHHHHHHHHhhhhcchhhHHHH-HHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhh-chhHHHHHhHHHHHHH
Q 018408           90 LIASMSNFLFGYHIGVMNGPIVSI-AKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKL-GCRRTFQIDTIPLILG  167 (356)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~i~  167 (356)
                      +.+.+..+...+..+.....+|.+ .+++|+  +..+.+.+.+.+.....++.+++|+++||+ |||++++++.++.+++
T Consensus        12 ~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgl--s~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg   89 (493)
T PRK15462         12 YYVVALQIWEYFSFYGMRALLILYLTNQLKY--DDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIG   89 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHH
Confidence            333333344444444455555544 566788  566688889999999999999999999999 9999999999999999


Q ss_pred             HHHHHHhh-hHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCC--ccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhH
Q 018408          168 AIISAQAH-SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTK--YRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWR  244 (356)
Q Consensus       168 ~~~~~~~~-~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~--~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~  244 (356)
                      .++++... +...++++..+.+++.|...+...++++|.+|++  +|..+.++.+.+.++|+.++|.+.+++.+..| |+
T Consensus        90 ~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~G-w~  168 (493)
T PRK15462         90 HVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYS-WA  168 (493)
T ss_pred             HHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhC-hH
Confidence            87766543 2233444444555666666677788999999975  69999999999999999999999999988878 99


Q ss_pred             HHHHHhHHHHHHHHHHh
Q 018408          245 TMLYIASLPGFILALGM  261 (356)
Q Consensus       245 ~~~~~~~~~~~~~~~~~  261 (356)
                      +.|.++++..+++.+..
T Consensus       169 ~~F~iaaigm~l~li~~  185 (493)
T PRK15462        169 MGFGLAAVGMIAGLVIF  185 (493)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99998776555544443

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.63  E-value=1.9e-14  Score=133.11  Aligned_cols=159  Identities=21%  Similarity=0.141  Sum_probs=130.2

Q ss_pred             chhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHH
Q 018408          106 MNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRF  185 (356)
Q Consensus       106 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  185 (356)
                      .....|.+.++.|.  +..+.+.+.+.+.++..++.++.|+++||+|||+.+..+.+..+++.++..+.++.+.+++..+
T Consensus       239 ~~~~~p~~~~~~g~--s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (406)
T PRK11551        239 LLNWLPSLLVGQGL--SRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGF  316 (406)
T ss_pred             HHHHHHHHHHhCCC--ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            34456777777887  4555888899999999999999999999999999988877777777776677777777777788


Q ss_pred             HHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHHHHHHHhhccc
Q 018408          186 LVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTV  265 (356)
Q Consensus       186 l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  265 (356)
                      +.|++.++..+....++.|.+|+++|++++|+.+....+|..++|.+++.+.++.++|...++..+...++..+..+++.
T Consensus       317 ~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (406)
T PRK11551        317 AAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLLV  396 (406)
T ss_pred             HHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence            88988888888889999999999999999999999999999999999999988766577777776666666555554443


Q ss_pred             C
Q 018408          266 E  266 (356)
Q Consensus       266 e  266 (356)
                      +
T Consensus       397 ~  397 (406)
T PRK11551        397 S  397 (406)
T ss_pred             c
Confidence            3

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.63  E-value=3.6e-14  Score=131.80  Aligned_cols=166  Identities=16%  Similarity=0.090  Sum_probs=108.0

Q ss_pred             HHHHHHHhhhhcchhhHH-HHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHH
Q 018408           94 MSNFLFGYHIGVMNGPIV-SIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISA  172 (356)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~  172 (356)
                      +..+......+...+.++ ++.+++|+  +..+.|++.+.+.+++.+++++.|+++||+|||++++++..+.+++.....
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~l~~~~g~--s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~   94 (420)
T PRK09528         17 LFFFFFFFIWSSWFSFFPIWLHDINGL--SGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFF   94 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence            334444444444455555 44555898  677799999999999999999999999999999999887665554433221


Q ss_pred             ---Hhh-----hHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhH
Q 018408          173 ---QAH-----SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWR  244 (356)
Q Consensus       173 ---~~~-----~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~  244 (356)
                         ..+     .....++++++.|.+.....+....+..+ . .++++..++....+..+|..+++.+++.+.+. + |+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~-~~  170 (420)
T PRK09528         95 IYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFNI-N-PQ  170 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHhc-C-ch
Confidence               111     11112222333333333333333333322 2 24577788888888899999999999988764 5 89


Q ss_pred             HHHHHhHHHHHHHHHHhhccc
Q 018408          245 TMLYIASLPGFILALGMQFTV  265 (356)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~  265 (356)
                      +.|++.+++.++..+..++++
T Consensus       171 ~~f~~~~~~~~~~~~~~~~~~  191 (420)
T PRK09528        171 INFWLGSGSALILLVLLFFAK  191 (420)
T ss_pred             HhHHHHHHHHHHHHHHHhccc
Confidence            999988877776665555544

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.62  E-value=3.9e-15  Score=139.47  Aligned_cols=157  Identities=17%  Similarity=0.186  Sum_probs=137.0

Q ss_pred             hcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhhhHHHHHHH
Q 018408          104 GVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWG  183 (356)
Q Consensus       104 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  183 (356)
                      ..++...+.+.++++.+  ..+.+|+.++....+.+..++.+.+.||+|.|.+.++|.++..++.++.+++++++.+++.
T Consensus        63 ~~~Gv~~~~~~~~f~~s--~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt  140 (509)
T KOG2504|consen   63 NSFGLLFEELMDYFGSS--SSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLT  140 (509)
T ss_pred             heehhhHHHHHHHhCCC--ccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            34446678999999984  4448999999999999999999999999999999999999999999999999999888875


Q ss_pred             -HHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHHHHHHHhh
Q 018408          184 -RFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQ  262 (356)
Q Consensus       184 -~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~  262 (356)
                       -++.|+|.|..+......+..+|. ++|+.++|+...+..+|.++-|.+..++.+..| ||+.+++.+.+.+-.++...
T Consensus       141 ~gvi~G~G~~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G-~r~~~l~~~~~~l~~~~~~~  218 (509)
T KOG2504|consen  141 FGVIGGLGLGLIYLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLSKYG-WRGALLIFGGISLNVLVAGA  218 (509)
T ss_pred             HHHHhhccchhhhcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHH
Confidence             688999999999999989998875 569999999999999999999999999999999 99999987777665555444


Q ss_pred             cc
Q 018408          263 FT  264 (356)
Q Consensus       263 ~~  264 (356)
                      .+
T Consensus       219 ~~  220 (509)
T KOG2504|consen  219 LL  220 (509)
T ss_pred             Hc
Confidence            43

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.62  E-value=6.7e-14  Score=128.85  Aligned_cols=154  Identities=18%  Similarity=0.144  Sum_probs=124.6

Q ss_pred             hHH-HHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 018408          109 PIV-SIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLV  187 (356)
Q Consensus       109 ~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~  187 (356)
                      ..| ++.+++|+  +..+.+++.+...++..++.++.|+++||+|||+.+..+.+...+........++.+.+++.+++.
T Consensus       238 ~~p~~l~~~~~~--~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~  315 (393)
T PRK15011        238 NMPLFIINELHL--PEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLN  315 (393)
T ss_pred             HHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            344 45567788  555678877777777888999999999999999988877666665555555567777777888888


Q ss_pred             HhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHHHHHHHhhcccC
Q 018408          188 GLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVE  266 (356)
Q Consensus       188 G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e  266 (356)
                      +++.|...+....+..|.+|. +||+++++++....+|..+++.+++.+.++.+ |+..|++.+++.++..+..+++||
T Consensus       316 ~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~  392 (393)
T PRK15011        316 AIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWN-YHAVFWFALVMIIATLFCLLRIKD  392 (393)
T ss_pred             HHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHhhcC
Confidence            888877777777888999985 59999999988899999999999999988777 999999888888887777777765

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.61  E-value=3.1e-13  Score=124.40  Aligned_cols=170  Identities=14%  Similarity=0.120  Sum_probs=123.5

Q ss_pred             HHHHHHhhhhcchhhHH-HHHHHhCCCCChhHHHHHHHHH-HHHHHHHHHhHHhhhhhhchhHHHH-HhHHHHHHHHHHH
Q 018408           95 SNFLFGYHIGVMNGPIV-SIAKELGFEGNPILEGLVVSIF-IAGAFVGSISSGSLADKLGCRRTFQ-IDTIPLILGAIIS  171 (356)
Q Consensus        95 ~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~dr~Grr~~~~-~~~~~~~i~~~~~  171 (356)
                      ..+..+.......+.++ ++.+++|.  +..+.|++.+.. .+++.++.+++++ +||+|||+.++ .+.++.+++..+.
T Consensus        23 ~~~~~~~~~~~~~p~~~~~l~~~~~~--s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~   99 (393)
T PRK15011         23 VAFLTGIAGALQTPTLSIFLTDEVHA--RPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLF   99 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHH
Confidence            34555555555556555 46788898  566689887655 4466666766666 99999998754 5566666777777


Q ss_pred             HHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccc--hhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHH
Q 018408          172 AQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRG--SLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYI  249 (356)
Q Consensus       172 ~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~--~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~  249 (356)
                      +++++++.+++.+.+.|...+...+....+..++.+++.|.  ...++.+.+.++|.+++|.+++.+.++.| ||..|++
T Consensus       100 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~g-w~~~f~~  178 (393)
T PRK15011        100 AWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFS-FTVMYLS  178 (393)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcC-hHHHHHH
Confidence            88889988776666655555566777788888877766553  44578888999999999999999988777 9999998


Q ss_pred             hHHHHHHHHHH-hhcccCCh
Q 018408          250 ASLPGFILALG-MQFTVESP  268 (356)
Q Consensus       250 ~~~~~~~~~~~-~~~~~e~p  268 (356)
                      .++..++..+. ++++||.+
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~  198 (393)
T PRK15011        179 AAVAFIVCGVMVWLFLPSMR  198 (393)
T ss_pred             HHHHHHHHHHHHHhhcCccC
Confidence            87776655544 45577763

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.60  E-value=4.6e-13  Score=116.04  Aligned_cols=219  Identities=18%  Similarity=0.185  Sum_probs=178.9

Q ss_pred             HHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHH
Q 018408           92 ASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIIS  171 (356)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~  171 (356)
                      +.+..+.--.......+.++.+.+++|+  +.+..|+++++..+...+.+++..+++.|+|.++.+..++++.+++.++-
T Consensus        17 Ivlia~NLR~~itsvgPLL~~Ir~~~gl--s~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR   94 (395)
T COG2807          17 IVLIAFNLRPAITSVGPLLDEIRQDLGL--SFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIR   94 (395)
T ss_pred             HHHHHhccchhhhhhhhhHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            3333344444557788889999999999  56669999999999999999999999999999999999999999999998


Q ss_pred             HHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhH
Q 018408          172 AQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIAS  251 (356)
Q Consensus       172 ~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~  251 (356)
                      ... +...++.+-.+.|.+.+..+...+..+-+.||++ -+..+|+|.+...+|+.+++.+...+.++.++||....+-+
T Consensus        95 ~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WA  172 (395)
T COG2807          95 SLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWA  172 (395)
T ss_pred             hcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHH
Confidence            777 7788889999999999999999999999999865 78999999999999999999998888887755999999999


Q ss_pred             HHHHHHHHHhhcccCChHHHHhcCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCccchhhhcccCcchhhHHHH
Q 018408          252 LPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGD  331 (356)
Q Consensus       252 ~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  331 (356)
                      .++++.++.++.-...       .+           +                 ...+.+..+...++++|.-|..++.+
T Consensus       173 l~allAl~~WlPq~~r-------~~-----------~-----------------~~~~~~~~~~~~vw~~~~aW~vtLfm  217 (395)
T COG2807         173 LLALLALLIWLPQALR-------EQ-----------A-----------------ASIATKLVSVRKVWRSPLAWQVTLFM  217 (395)
T ss_pred             HHHHHHHHHHhhhccc-------cc-----------c-----------------cccccccccccccccCchhHHHHHHH
Confidence            9988887776532111       00           0                 00001113445578999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhh
Q 018408          332 GALASLLVGVTNFAGLRS  349 (356)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~  349 (356)
                      .......+.++.|.+.+.
T Consensus       218 GlqS~~~Y~~~~WLP~il  235 (395)
T COG2807         218 GLQSLLYYIVIGWLPAIL  235 (395)
T ss_pred             HhhHHHHHHHHHHHHHHH
Confidence            888888888888888765

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.60  E-value=2.2e-14  Score=130.76  Aligned_cols=147  Identities=17%  Similarity=0.051  Sum_probs=122.6

Q ss_pred             hHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhhhH--HHHHHHHHH
Q 018408          109 PIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSL--DEMLWGRFL  186 (356)
Q Consensus       109 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~l  186 (356)
                      ..+.+.+++|.  +..+.+++.+.+.++..++.++.|+++||+|||+.+.++.++.+++.++..+.++.  ..+++..++
T Consensus       227 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (377)
T TIGR00890       227 LYKPYGQSLGL--SDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVAL  304 (377)
T ss_pred             HHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHH
Confidence            34455677777  55568888999999999999999999999999999999988888888777666543  234456777


Q ss_pred             HHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHHHHH
Q 018408          187 VGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILA  258 (356)
Q Consensus       187 ~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~  258 (356)
                      .|++.+...+..+.++.|.+|+++|++..|+.+....+|..++|.+.+.+.++.+ |++.|++.+++.++++
T Consensus       305 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       305 VFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIG-FEYTFIVTGAFALTSL  375 (377)
T ss_pred             HHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhc-hhhHHHHHHHHHHHhc
Confidence            8888888878888899999999999999999999999999999999999988888 9999988777666543

>TIGR00889 2A0110 nucleoside transporter

Probab=99.59  E-value=1.1e-14  Score=134.97  Aligned_cols=160  Identities=14%  Similarity=0.091  Sum_probs=126.8

Q ss_pred             hhHHHHHHHhCCCC------ChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhh----hH
Q 018408          108 GPIVSIAKELGFEG------NPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAH----SL  177 (356)
Q Consensus       108 ~~~~~~~~~~g~~~------~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~----~~  177 (356)
                      ...+.+.++.|.+.      .....+...++..++.+++.++.|+++||+|||+++.++.++.+++..+.....    ++
T Consensus       229 ~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~  308 (418)
T TIGR00889       229 IFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGY  308 (418)
T ss_pred             HhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence            33455555666432      123468888888889999999999999999999999999999888876666532    24


Q ss_pred             HHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhH-HHHHHHHHHHHHhhhccCCCCc-----hhHHHHHHhH
Q 018408          178 DEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQ-VGTCLGIITSLFLGIPAEDDPH-----WWRTMLYIAS  251 (356)
Q Consensus       178 ~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~-~~~~~g~~~~~~i~~~l~~~~~-----~w~~~~~~~~  251 (356)
                      +.+++.+++.|++.+...+....++.|++|++.|++++|+.+ ....+|.+++|.+++.+.++.+     +|+..|++.+
T Consensus       309 ~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~  388 (418)
T TIGR00889       309 ALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFA  388 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHH
Confidence            566778999999999888888999999999999999999997 6788999999999999887642     3999998877


Q ss_pred             HHHHHHHH-HhhcccCC
Q 018408          252 LPGFILAL-GMQFTVES  267 (356)
Q Consensus       252 ~~~~~~~~-~~~~~~e~  267 (356)
                      ++.++..+ ..++++|+
T Consensus       389 ~~~~i~~~l~~~~~~~~  405 (418)
T TIGR00889       389 GYIAILAVLFMIFFKYS  405 (418)
T ss_pred             HHHHHHHHHHHHHhCCc
Confidence            77666554 45557765

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.59  E-value=1.2e-13  Score=124.57  Aligned_cols=161  Identities=25%  Similarity=0.333  Sum_probs=140.0

Q ss_pred             hhhhcchhhHHHHHHHh-CCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhH-HHHHhHHHHHHHHHHHHHhhhHH
Q 018408          101 YHIGVMNGPIVSIAKEL-GFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRR-TFQIDTIPLILGAIISAQAHSLD  178 (356)
Q Consensus       101 ~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~-~~~~~~~~~~i~~~~~~~~~~~~  178 (356)
                      ..........|.+.++. |.  +..+.+++.+...++..++.++.+++.||+|||+ .+..+..+..++.+.....++.+
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  266 (352)
T cd06174         189 FGYYGLLTYLPLYLQEVLGL--SAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLA  266 (352)
T ss_pred             hHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHH
Confidence            33344444555555554 66  6667899999999999999999999999999999 99999999999999998888888


Q ss_pred             HHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHHHHH
Q 018408          179 EMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILA  258 (356)
Q Consensus       179 ~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~  258 (356)
                      .+++..++.|++.+...+....++.|..|+++|++.+++.+....+|..+++.+.+.+.+..+ |+..+++.+++.++..
T Consensus       267 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~-~~~~~~~~~~~~~i~~  345 (352)
T cd06174         267 LLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGG-YGGVFLILAALALLAA  345 (352)
T ss_pred             HHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-cchHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999999999999999999999999999988777 9999999888888777


Q ss_pred             HHhhcc
Q 018408          259 LGMQFT  264 (356)
Q Consensus       259 ~~~~~~  264 (356)
                      +..+++
T Consensus       346 i~~~~~  351 (352)
T cd06174         346 LLLLLL  351 (352)
T ss_pred             HHheec
Confidence            665443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.58  E-value=1.1e-13  Score=127.56  Aligned_cols=156  Identities=17%  Similarity=0.112  Sum_probs=128.6

Q ss_pred             hhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 018408          107 NGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFL  186 (356)
Q Consensus       107 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l  186 (356)
                      ....+.+..+.|.  +.  .++..+.+.++..++.++.|++.||+|+|+.+..+..+.+++.++..+.++.+.+++..++
T Consensus       236 ~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  311 (399)
T PRK05122        236 ATFITLYYAARGW--DG--AALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAAL  311 (399)
T ss_pred             HHHHHHHHHHccc--cc--chHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            3444444455565  22  4556677888889999999999999999999998888888888888888888888888999


Q ss_pred             HHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHHHHHHHhhcccC
Q 018408          187 VGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVE  266 (356)
Q Consensus       187 ~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e  266 (356)
                      .|++.+..++.....+.|.+|+++||++.++++....+|..+++.+.+.+.+..+ |++.+++.++..+++.+..+++++
T Consensus       312 ~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~  390 (399)
T PRK05122        312 TGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFG-YPSIFLAAALAALLGLALTWLLYR  390 (399)
T ss_pred             HHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999998888888888899999999999999999999999999999999888877 999999888877777666555544


Q ss_pred             C
Q 018408          267 S  267 (356)
Q Consensus       267 ~  267 (356)
                      +
T Consensus       391 ~  391 (399)
T PRK05122        391 R  391 (399)
T ss_pred             c
Confidence            3

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.58  E-value=3.9e-14  Score=131.61  Aligned_cols=145  Identities=13%  Similarity=0.021  Sum_probs=122.9

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHH
Q 018408          122 NPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIY  201 (356)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~  201 (356)
                      +..+.+++.++..++..++.+++|+++||+|||+.+.++.++.+++.++.+++++.+.+++.+++.|++.+...+....+
T Consensus       260 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~  339 (420)
T PRK09528        260 GTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKY  339 (420)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44557888888889999999999999999999999999999999888888888899988889999999988888888889


Q ss_pred             HHhhcCCCccchhHHH-hHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHHHHHHHh-hcccCC
Q 018408          202 ISEVAPTKYRGSLGTL-CQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGM-QFTVES  267 (356)
Q Consensus       202 ~~e~~p~~~r~~~~~~-~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e~  267 (356)
                      +.|.+|++.|++..+. +++...+|.++++.+.+.+.+..| |+..|.+.+++.++..+.. ++.++.
T Consensus       340 ~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G-~~~~f~~~~~~~~i~~~~~~~~~~~~  406 (420)
T PRK09528        340 ITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIG-FQGTYLILGGIVLLFTLISVFTLSGD  406 (420)
T ss_pred             HHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            9999999999987765 678889999999999999999888 9999998777666554433 334433

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.57  E-value=6.5e-14  Score=131.26  Aligned_cols=161  Identities=14%  Similarity=0.092  Sum_probs=126.0

Q ss_pred             HHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhh--hchhHHHHH--hHHHHHHHHHHHH
Q 018408           97 FLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADK--LGCRRTFQI--DTIPLILGAIISA  172 (356)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr--~Grr~~~~~--~~~~~~i~~~~~~  172 (356)
                      +............++.+.+++|+  +..+.+++.++..++..++.++.|+++||  +++|+...+  +.++.+++.++..
T Consensus       251 ~l~~~~~~~~~~~l~~~~~~~g~--s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~  328 (455)
T TIGR00892       251 VIMFLGFFAPIIFLVPYAKDKGV--DEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCA  328 (455)
T ss_pred             HHHHHHccchHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333444555666677888  56668899999999999999999999997  344443333  3344445555556


Q ss_pred             HhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHH
Q 018408          173 QAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASL  252 (356)
Q Consensus       173 ~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~  252 (356)
                      ..++++.+++.+++.|++.+...+....++.|.+|++++++.+++++....+|.+++|.+++.+.+..++|++.|++.++
T Consensus       329 ~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~  408 (455)
T TIGR00892       329 LAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGS  408 (455)
T ss_pred             HhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhH
Confidence            67888888889999999999998999999999999999999999999999999999999999998877559999998887


Q ss_pred             HHHHHHH
Q 018408          253 PGFILAL  259 (356)
Q Consensus       253 ~~~~~~~  259 (356)
                      +.+++.+
T Consensus       409 ~~li~~~  415 (455)
T TIGR00892       409 IVVSAGL  415 (455)
T ss_pred             HHHHHHH
Confidence            7665554

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.57  E-value=1.8e-13  Score=128.79  Aligned_cols=172  Identities=17%  Similarity=0.079  Sum_probs=123.0

Q ss_pred             HHHHHHHHHHHHhhhhcchhhHH-HHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHH
Q 018408           89 VLIASMSNFLFGYHIGVMNGPIV-SIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILG  167 (356)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~  167 (356)
                      ++.+.+..+...........++| ++.+++|+  +..+.++..+...++..++.+++|+++||+|||+.++....+..++
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~--s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~  337 (467)
T PRK09556        260 IWLLCFANIFLYIVRIGIDNWSPVYAFQELGF--SKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALII  337 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence            44444444444444334455566 45567888  5566888889999999999999999999999998876654444433


Q ss_pred             HHH--HHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHH-HHHHHHHhhhccCC------
Q 018408          168 AII--SAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCL-GIITSLFLGIPAED------  238 (356)
Q Consensus       168 ~~~--~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~-g~~~~~~i~~~l~~------  238 (356)
                      ..+  ....++...+++.+++.|++..+..........|.+|++.||++.|+.+....+ |..++|.+.|.+.+      
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~  417 (467)
T PRK09556        338 FTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGT  417 (467)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhccccccc
Confidence            322  223345656667788888655444444446777999999999999999888886 77999999999988      


Q ss_pred             ------CCchhHHHHHHhHHHHHHHHHHhhc
Q 018408          239 ------DPHWWRTMLYIASLPGFILALGMQF  263 (356)
Q Consensus       239 ------~~~~w~~~~~~~~~~~~~~~~~~~~  263 (356)
                            ..+ |+..|++.++..+++.+..++
T Consensus       418 ~~~~~~~~~-~~~~f~~~~~~~~~~~~~~~~  447 (467)
T PRK09556        418 PIFGYTLTG-WAGTFAALDIAAIGCICLMAI  447 (467)
T ss_pred             ccccccccC-hHHHHHHHHHHHHHHHHHHHH
Confidence                  455 999998887777776655443

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.56  E-value=4.7e-13  Score=122.22  Aligned_cols=151  Identities=19%  Similarity=0.191  Sum_probs=123.8

Q ss_pred             HHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhh
Q 018408          112 SIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGI  191 (356)
Q Consensus       112 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~G~~~  191 (356)
                      ++.+++|.  +..+.+++.+...+...++.++.|++.||+|||+.+.++.++..+........++.+.+++.+++.|++.
T Consensus       225 ~~~~~~g~--~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  302 (375)
T TIGR00899       225 LIIHELGL--PDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFI  302 (375)
T ss_pred             HHHHHcCC--CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44567787  4555777777777777788899999999999999998887776666666666677888888889999998


Q ss_pred             hhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHHHHHHHhhcccC
Q 018408          192 GVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVE  266 (356)
Q Consensus       192 g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e  266 (356)
                      +...+....++.|..|. ++++++++++....+|..++|.+++.+.+..+ |+..|++.++..+++.+...+++|
T Consensus       303 g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~  375 (375)
T TIGR00899       303 GILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWS-YHAVYWFAIVMLIVALFCLLLIKD  375 (375)
T ss_pred             HHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHheecC
Confidence            88888888899999876 46799999999999999999999999888877 999999988888877776665543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK12382 putative transporter; Provisional

Probab=99.55  E-value=2.4e-13  Score=125.08  Aligned_cols=152  Identities=12%  Similarity=0.076  Sum_probs=127.2

Q ss_pred             chhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHH
Q 018408          106 MNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRF  185 (356)
Q Consensus       106 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  185 (356)
                      .....+.+.++.+.  +.  .++..+.+.++..++.++.|++.||+|+|+.+..+..+.+++.++..+.++...++++.+
T Consensus       235 ~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (392)
T PRK12382        235 IGTFVSLYFASKGW--AM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAA  310 (392)
T ss_pred             HHHHHHHHHHhcCC--ch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence            33444555556665  33  455666777888899999999999999999999998888888888777888888888899


Q ss_pred             HHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHHHHHHHhh
Q 018408          186 LVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQ  262 (356)
Q Consensus       186 l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~  262 (356)
                      +.|++.+...+.....+.|.+|+++||++.++++....+|..++|.+.+.+.++.+ |+..|++.++..++..+..+
T Consensus       311 l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~  386 (392)
T PRK12382        311 LTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFG-YPSVFLAGAISAVLGIIVTI  386 (392)
T ss_pred             HHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHHHHH
Confidence            99999988888888888999999999999999999999999999999999998888 99999998887777665544

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.53  E-value=7.4e-13  Score=121.44  Aligned_cols=155  Identities=12%  Similarity=-0.008  Sum_probs=130.7

Q ss_pred             hhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhhhHHHHHH
Q 018408          103 IGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLW  182 (356)
Q Consensus       103 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~  182 (356)
                      ...+....|.+.+++|.  +..+.|.+.+...++.+++.++.+++.||+|+|+.+.++.++.++..+..++.++.+.+++
T Consensus       221 ~~~~~~~~~~~l~~~g~--s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  298 (382)
T TIGR00902       221 HAAYYGFSAIYWQAAGI--SASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFL  298 (382)
T ss_pred             HHHHHHHHHHHHHHCCC--CHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHH
Confidence            33344455656677888  5666888888888889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhH-HHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHHHHHHHh
Q 018408          183 GRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQ-VGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGM  261 (356)
Q Consensus       183 ~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~-~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~  261 (356)
                      .+++.|+..+...+....++.+. |+++|+++.++++ ....+|..+++.++|.+.++.+ + ..|++.+.+.+++.++.
T Consensus       299 ~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g-~-~~~~~~~~~~~~~~~~~  375 (382)
T TIGR00902       299 LQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG-A-GTFVFMAIIAAAAFFLI  375 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-H-HHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988 9999999999986 5788999999999999999887 6 55666666666555444


Q ss_pred             h
Q 018408          262 Q  262 (356)
Q Consensus       262 ~  262 (356)
                      .
T Consensus       376 ~  376 (382)
T TIGR00902       376 P  376 (382)
T ss_pred             H
Confidence            3

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.52  E-value=1.2e-12  Score=123.40  Aligned_cols=172  Identities=19%  Similarity=0.138  Sum_probs=136.1

Q ss_pred             HHHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHH
Q 018408           91 IASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAII  170 (356)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~  170 (356)
                      .++++.+....+..+.....+.+..+..  .++...+++..+..+-..+..+++|.++||++||++++.+-++.++..+.
T Consensus        14 ~lw~a~~iS~lG~~~~~va~~wlv~~lt--~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~   91 (524)
T PF05977_consen   14 RLWIAQLISNLGDWMQTVALAWLVTQLT--GSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALL   91 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH
Confidence            3444445555555555566666665553  37888999999999999999999999999999999999988777665554


Q ss_pred             HHHh-----hhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHH
Q 018408          171 SAQA-----HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRT  245 (356)
Q Consensus       171 ~~~~-----~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~  245 (356)
                      .++.     .+.+.+++.-++.|++.+...|...+++.|+.|+++...++++.++..++...+||.++|.+....| -.+
T Consensus        92 L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G-~~~  170 (524)
T PF05977_consen   92 LAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFG-AAA  170 (524)
T ss_pred             HHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHH-HHH
Confidence            4332     3678888899999999999999999999999999999999999999999999999999999887766 677


Q ss_pred             HHHHhHHHHHHHHHHhhccc
Q 018408          246 MLYIASLPGFILALGMQFTV  265 (356)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~  265 (356)
                      .|.+.++..++.++.+..++
T Consensus       171 ~f~inalsfl~~i~~l~~~~  190 (524)
T PF05977_consen  171 AFLINALSFLISILALLRWK  190 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHcc
Confidence            88877666555544444443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.52  E-value=3.1e-13  Score=124.94  Aligned_cols=137  Identities=17%  Similarity=0.156  Sum_probs=119.4

Q ss_pred             HHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhh
Q 018408          126 EGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEV  205 (356)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~  205 (356)
                      .+.+.++..++..++.++.|+++||+|||+.+..+.++.+++.+...+.++.+.+++.+++.|++.+...+....++.+.
T Consensus       260 ~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  339 (408)
T PRK09874        260 SGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYN  339 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHh
Confidence            45566667788888999999999999999999999888888777777777888888889999999999989888899999


Q ss_pred             cCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHHHHHHHhhc
Q 018408          206 APTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQF  263 (356)
Q Consensus       206 ~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~  263 (356)
                      .|+++||+.+++++....+|..++|.+++.+.+..+ |++.|++.+++.++..+..++
T Consensus       340 ~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~~  396 (408)
T PRK09874        340 SSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYG-FRAVFLVTAGVVLFNAVYSWN  396 (408)
T ss_pred             CCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999988888 999999988887777665443

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.52  E-value=1.4e-12  Score=121.05  Aligned_cols=177  Identities=12%  Similarity=0.125  Sum_probs=129.3

Q ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhh----hhchhHHHHHh-HHHH
Q 018408           90 LIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLAD----KLGCRRTFQID-TIPL  164 (356)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~Grr~~~~~~-~~~~  164 (356)
                      +.++...+...+......+..+.+.+++|.  +....+++..+..+...+.+++.|+++|    |+|||+.++++ .+..
T Consensus         7 i~~~~~~~Giq~~~~l~~~~l~~yl~~lg~--~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~   84 (477)
T TIGR01301         7 LRVASVAAGVQFGWALQLSLLTPYVQELGI--PHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALV   84 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHH
Confidence            334444444445555566666667788998  6677999999999999999999999999    59999998874 6666


Q ss_pred             HHHHHHHHHhhhHH-----------------HHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCcc--chhHHHhHHHHHHH
Q 018408          165 ILGAIISAQAHSLD-----------------EMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYR--GSLGTLCQVGTCLG  225 (356)
Q Consensus       165 ~i~~~~~~~~~~~~-----------------~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r--~~~~~~~~~~~~~g  225 (356)
                      +++.++++++++..                 .++++..+..++.+...+...++++|.+|+++|  +.+.++.+....+|
T Consensus        85 ~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG  164 (477)
T TIGR01301        85 AFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIG  164 (477)
T ss_pred             HHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHH
Confidence            66666776665532                 223333445567777888889999999998865  57888899999999


Q ss_pred             HHHHHHhhhccC--CC--------C----chhHHHHHHhHHHHHHHHH-HhhcccCCh
Q 018408          226 IITSLFLGIPAE--DD--------P----HWWRTMLYIASLPGFILAL-GMQFTVESP  268 (356)
Q Consensus       226 ~~~~~~i~~~l~--~~--------~----~~w~~~~~~~~~~~~~~~~-~~~~~~e~p  268 (356)
                      ..+++.++++..  +.        .    .+.+..|++.++..++..+ ..++.+|.|
T Consensus       165 ~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~  222 (477)
T TIGR01301       165 NVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP  222 (477)
T ss_pred             HHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence            999999887541  10        0    1378899998877776654 455678865

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK09952 shikimate transporter; Provisional

Probab=99.51  E-value=2e-12  Score=120.72  Aligned_cols=154  Identities=16%  Similarity=0.091  Sum_probs=112.9

Q ss_pred             HHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHH---h-hhHHHHHHHHHHH
Q 018408          112 SIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQ---A-HSLDEMLWGRFLV  187 (356)
Q Consensus       112 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~---~-~~~~~~~~~~~l~  187 (356)
                      ++.+.+|++  ......+.....+...++.++.|+++||+|||+++..+.++.+++.+....   . ++...+++..++.
T Consensus       276 y~~~~~g~s--~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  353 (438)
T PRK09952        276 YSTQNLGLP--RELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLA  353 (438)
T ss_pred             HHHHhcCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            445667874  333444445556667788899999999999999988887766555443322   1 2334444556677


Q ss_pred             HhhhhhhhhHHHHHHHhhcCCCccchhHHHh-HHHHHHHHHHHHHhhhccCCCC-chhHHHHHHhHHHHHHHHHHhhccc
Q 018408          188 GLGIGVNTVLVPIYISEVAPTKYRGSLGTLC-QVGTCLGIITSLFLGIPAEDDP-HWWRTMLYIASLPGFILALGMQFTV  265 (356)
Q Consensus       188 G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~-~~~~~~g~~~~~~i~~~l~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~  265 (356)
                      +++.+...+..+.+++|.+|++.|+.+.++. +.+..+|+.++|.+.+.+.+.. ++|...+.+.++..++..+..+.++
T Consensus       354 ~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~  433 (438)
T PRK09952        354 NIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMK  433 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcc
Confidence            8888888888899999999999999999984 5566689999999999987743 3488888888877777777766666


Q ss_pred             CC
Q 018408          266 ES  267 (356)
Q Consensus       266 e~  267 (356)
                      |+
T Consensus       434 ~~  435 (438)
T PRK09952        434 DN  435 (438)
T ss_pred             cc
Confidence            64

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.51  E-value=8.3e-13  Score=121.02  Aligned_cols=169  Identities=21%  Similarity=0.147  Sum_probs=114.4

Q ss_pred             HHHHHHHHHHHhhhhcchhhHHHH-HHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhH--HHHH------h
Q 018408           90 LIASMSNFLFGYHIGVMNGPIVSI-AKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRR--TFQI------D  160 (356)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~--~~~~------~  160 (356)
                      +...+..+.............|.+ .+.+|.  +..+.+++.+...++..++.++.|+++||+|||+  ....      +
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  295 (399)
T TIGR00893       218 WGLALGQFLVNIGLGFFLTWFPTYLVQERGL--SILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIA  295 (399)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHhcc--cHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHH
Confidence            333333444444444445555544 456777  5566888899999999999999999999999996  1111      1


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCC
Q 018408          161 TIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP  240 (356)
Q Consensus       161 ~~~~~i~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~  240 (356)
                      .++..+........++....+...++.+++.+ ..+....++.|.+|+++|++++++.+....+|..++|.+.+.+.+..
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~  374 (399)
T TIGR00893       296 GLVLSLLMFATNYVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATT  374 (399)
T ss_pred             HHHHHHHHHHhccchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCC
Confidence            11111111111112233333333334444444 77888999999999999999999999999999999999999999877


Q ss_pred             chhHHHHHHhHHHHHHHHHHh
Q 018408          241 HWWRTMLYIASLPGFILALGM  261 (356)
Q Consensus       241 ~~w~~~~~~~~~~~~~~~~~~  261 (356)
                      ++|+..+++.++..++..+..
T Consensus       375 g~~~~~~~~~~~~~~~~~~~~  395 (399)
T TIGR00893       375 GSFAGALMVVAALALIGALSY  395 (399)
T ss_pred             CchhHHHHHHHHHHHHHHHHH
Confidence            668888888777766665544

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.51  E-value=1.4e-12  Score=124.01  Aligned_cols=162  Identities=18%  Similarity=0.078  Sum_probs=108.7

Q ss_pred             chhhHHHHHHHhCCCCChhH----------HHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhh
Q 018408          106 MNGPIVSIAKELGFEGNPIL----------EGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAH  175 (356)
Q Consensus       106 ~~~~~~~~~~~~g~~~~~~~----------~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~  175 (356)
                      .....|.+.++.|++.+...          ......+..++.+++.++.++++||+|||+.++++.++.+++.++.++..
T Consensus       307 ~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~  386 (502)
T TIGR00887       307 VNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAY  386 (502)
T ss_pred             cccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence            34446777788887533110          01123344456677889999999999999999888877777766555432


Q ss_pred             h----HHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCc---------h
Q 018408          176 S----LDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPH---------W  242 (356)
Q Consensus       176 ~----~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~---------~  242 (356)
                      +    ...+...-+...++..+..+..+.+.+|.+|++.|+++.++.+....+|+++++.+.+.+.+..+         +
T Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  466 (502)
T TIGR00887       387 NHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIW  466 (502)
T ss_pred             HhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcccccccccccccc
Confidence            1    11111111112222223455677788999999999999999999999999999999998877421         1


Q ss_pred             hHHHHHHhHHHHHHHHHHhhcccCC
Q 018408          243 WRTMLYIASLPGFILALGMQFTVES  267 (356)
Q Consensus       243 w~~~~~~~~~~~~~~~~~~~~~~e~  267 (356)
                      +...|++.++..++..+..+++||+
T Consensus       467 ~~~~~~i~~~~~~~~~i~~~~lpEt  491 (502)
T TIGR00887       467 MGHVLEIFALFMFLGILFTLLIPET  491 (502)
T ss_pred             chHHHHHHHHHHHHHHHHheEeccC
Confidence            4556676666666666666778998

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK03699 putative transporter; Provisional

Probab=99.51  E-value=1.3e-12  Score=120.40  Aligned_cols=159  Identities=11%  Similarity=0.008  Sum_probs=127.0

Q ss_pred             hcchhhHHHHH-HHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhhhHHHHHH
Q 018408          104 GVMNGPIVSIA-KELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLW  182 (356)
Q Consensus       104 ~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~  182 (356)
                      ..+..+.|.+. +.+|+  +..+.+++.+.+.++..++.++.|+++||+|||+.+.....+.++...+....++...+.+
T Consensus       222 ~~~~~~~p~~l~~~~g~--s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  299 (394)
T PRK03699        222 LTFISWVPEYAQKKFGM--SLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLY  299 (394)
T ss_pred             HHHHHHHHHHHHHHcCC--ChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHH
Confidence            33445566555 66788  5556888999999999999999999999999999998887777776666666777777777


Q ss_pred             HHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHHHHHHHhh
Q 018408          183 GRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQ  262 (356)
Q Consensus       183 ~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~  262 (356)
                      ..++.|++.++.++....+..|..| +.++...+....+..+|..++|.+.+.+.+..+ ++..+++.+++.+++.+...
T Consensus       300 ~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~  377 (394)
T PRK03699        300 AILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFG-LQAALLTANGLYAVVFVMCI  377 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhC-chhhhhhhHHHHHHHHHHHH
Confidence            7888899888888888878888776 446788888888889999999999999998888 89998887777777765555


Q ss_pred             cccC
Q 018408          263 FTVE  266 (356)
Q Consensus       263 ~~~e  266 (356)
                      ++++
T Consensus       378 ~~~~  381 (394)
T PRK03699        378 LLGF  381 (394)
T ss_pred             HHHH
Confidence            5543

>TIGR00897 2A0118 polyol permease family

Probab=99.51  E-value=1e-12  Score=121.31  Aligned_cols=158  Identities=16%  Similarity=0.086  Sum_probs=118.2

Q ss_pred             hhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHH-HhHHHHHHHHHHHHH-----hh
Q 018408          102 HIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQ-IDTIPLILGAIISAQ-----AH  175 (356)
Q Consensus       102 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~-~~~~~~~i~~~~~~~-----~~  175 (356)
                      .........|.+.+++|+  +..+.+++.+...++..++.++.|+++||+|||+.+. .+.+..+++.+....     .+
T Consensus       237 ~~~~~~~~~p~~~~~~g~--s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~  314 (402)
T TIGR00897       237 GLFGFAVFLPMFVAELGF--STSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGH  314 (402)
T ss_pred             HHHHHHHHHHHHHHHcCC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            333445566777788888  4555788888889999999999999999999988764 333333443333322     23


Q ss_pred             hHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHH
Q 018408          176 SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGF  255 (356)
Q Consensus       176 ~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~  255 (356)
                      +.+.+++..++.|++.+...+. ...+.|..| ++||+++|+.+....+|..++|.+++.+.+..| |...+++.++..+
T Consensus       315 ~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g-~~~~~~~~a~~~~  391 (402)
T TIGR00897       315 SFAVALIIAIALGIFLAGYVPL-AAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFG-AIGVVWIFAALYV  391 (402)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hHHHHHHHHHHHH
Confidence            5566667788888888766443 456677655 589999999999999999999999999999888 8899998888877


Q ss_pred             HHHHHhhcc
Q 018408          256 ILALGMQFT  264 (356)
Q Consensus       256 ~~~~~~~~~  264 (356)
                      +..+..+|+
T Consensus       392 i~~~~~~~~  400 (402)
T TIGR00897       392 VSAFLTAFI  400 (402)
T ss_pred             HHHHHHHHh
Confidence            776666554

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.50  E-value=2.6e-12  Score=121.47  Aligned_cols=160  Identities=17%  Similarity=0.090  Sum_probs=113.2

Q ss_pred             cchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhh--hH-H-HH
Q 018408          105 VMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAH--SL-D-EM  180 (356)
Q Consensus       105 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~--~~-~-~~  180 (356)
                      ......|.+.++.|.+..  ...+......++..++.+++|+++||+|||+.++.+.++.+++.++++...  +. . ..
T Consensus       289 ~~~~~~p~i~~~~g~~~~--~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~  366 (479)
T PRK10077        289 VVLYYAPEIFKTLGASTD--IALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVA  366 (479)
T ss_pred             HHHHHHHHHHHHcCCCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHH
Confidence            344556788888888533  355666667778889999999999999999999999999888887765432  11 1 22


Q ss_pred             HHHHHHHHhhhhh-hhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhh------ccCCCCchhHHHHHHhHHH
Q 018408          181 LWGRFLVGLGIGV-NTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGI------PAEDDPHWWRTMLYIASLP  253 (356)
Q Consensus       181 ~~~~~l~G~~~g~-~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~------~l~~~~~~w~~~~~~~~~~  253 (356)
                      +++.++.+++.+. ..+..+.+++|.+|+++|++++|+.+....+|.++++.+.+      ++.+..+ |++.|++.++.
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~  445 (479)
T PRK10077        367 LLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFH-NGFSYWIYGCM  445 (479)
T ss_pred             HHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhcc-CccHHHHHHHH
Confidence            2333444444433 33667889999999999999999998888888887765544      3334556 77778877666


Q ss_pred             HHHHHHHh-hcccCC
Q 018408          254 GFILALGM-QFTVES  267 (356)
Q Consensus       254 ~~~~~~~~-~~~~e~  267 (356)
                      .++.+++. ++.||+
T Consensus       446 ~~~~~~~~~~~~~e~  460 (479)
T PRK10077        446 GVLAALFMWKFVPET  460 (479)
T ss_pred             HHHHHHHHHhccccC
Confidence            66555443 456776

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.49  E-value=8.5e-13  Score=124.21  Aligned_cols=176  Identities=14%  Similarity=-0.004  Sum_probs=127.9

Q ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHH
Q 018408           89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA  168 (356)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~  168 (356)
                      ++...+..+.............|.+.+++|++.  ...++......++..++.++.|+++||+|||+.+.++.++.+++.
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~  363 (481)
T TIGR00879       286 FLGVVLQWFQQFTGINAIMYYSPTIFENAGVST--DHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICL  363 (481)
T ss_pred             HHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            333344444444444455566788888889854  457788888889999999999999999999999999888877777


Q ss_pred             HHHHHh-----h------hHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccC
Q 018408          169 IISAQA-----H------SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAE  237 (356)
Q Consensus       169 ~~~~~~-----~------~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~  237 (356)
                      ++.++.     +      +...++...++.+....+..+....++.|.+|++.|++++++.+....+|.++++.+.+.+.
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~  443 (481)
T TIGR00879       364 FVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTML  443 (481)
T ss_pred             HHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666521     1      22223333333333333344666778899999999999999999999999999999999888


Q ss_pred             CCCchhHHHHHHhHHHHHHHHHHh-hcccCC
Q 018408          238 DDPHWWRTMLYIASLPGFILALGM-QFTVES  267 (356)
Q Consensus       238 ~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e~  267 (356)
                      ++.+ |++.|++.++++++..++. ++.||+
T Consensus       444 ~~~~-~~~~f~~~~~~~~~~~i~~~~~~~~~  473 (481)
T TIGR00879       444 ESIG-VGGVFIFFGGLNVLGLIFVYFFLPET  473 (481)
T ss_pred             HhcC-ccceehhHHHHHHHHHHHHheecccC
Confidence            8777 9988888877777666554 446665

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.49  E-value=5.1e-13  Score=122.51  Aligned_cols=157  Identities=17%  Similarity=0.148  Sum_probs=116.3

Q ss_pred             HHHHhhhhcchhhHHHHH-HHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHH--HHHH
Q 018408           97 FLFGYHIGVMNGPIVSIA-KELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAI--ISAQ  173 (356)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~--~~~~  173 (356)
                      +.............|.+. +++|.  +..+.+.+.+...++..++.++.|+++||+|||+.+..+..+..+..+  ...+
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~  306 (394)
T TIGR00883       229 IATTTTFYLITTYLPTYLTQTLGL--SANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMAL  306 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333334444555554 66787  455578888888999999999999999999999987765544443331  2222


Q ss_pred             --hhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHH-hHHHHHHHHHHHHHhhhccCCCCchhHHHHHHh
Q 018408          174 --AHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTL-CQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIA  250 (356)
Q Consensus       174 --~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~-~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~  250 (356)
                        .++.+.+++..++.|++.+...+....++.|.+|+++|++++++ ++.+..+|..++|.+++.+.++.+.|++.+++.
T Consensus       307 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~  386 (394)
T TIGR00883       307 LDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYL  386 (394)
T ss_pred             hcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHH
Confidence              24566666778888998888889999999999999999999998 567778899999999999988776577776665


Q ss_pred             HHHHH
Q 018408          251 SLPGF  255 (356)
Q Consensus       251 ~~~~~  255 (356)
                      ++..+
T Consensus       387 ~~~~l  391 (394)
T TIGR00883       387 AALAL  391 (394)
T ss_pred             HHHHH
Confidence            54443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.49  E-value=2.2e-12  Score=118.73  Aligned_cols=161  Identities=12%  Similarity=0.072  Sum_probs=122.3

Q ss_pred             hcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhh-hHHHHHH
Q 018408          104 GVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAH-SLDEMLW  182 (356)
Q Consensus       104 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~-~~~~~~~  182 (356)
                      .......|.+.+++|.  +..+.+...+.+.++..++.++.|++.||+|||+.+..+..+..++.++....+ +...+  
T Consensus       222 ~~~~~~lp~~l~~~g~--s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--  297 (393)
T PRK09705        222 ASLIAWLPAFYIEIGA--SAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--  297 (393)
T ss_pred             HHHHHHHHHHHHHcCC--ChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--
Confidence            3344455666666787  556688999999999999999999999999999999888877777766554333 22222  


Q ss_pred             HHHHHHhhhhhhhhHHHHHHHhhcC-CCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHHHHHHH-
Q 018408          183 GRFLVGLGIGVNTVLVPIYISEVAP-TKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALG-  260 (356)
Q Consensus       183 ~~~l~G~~~g~~~~~~~~~~~e~~p-~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~-  260 (356)
                      ..++.|++.+...+.......+.++ +++|++..++.+....++..++|.+.+++.+..|+|...|++.++..++..+. 
T Consensus       298 ~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~  377 (393)
T PRK09705        298 WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIIT  377 (393)
T ss_pred             HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Confidence            2345677777777777766677775 57899999999999999999999999999998877888888877666655544 


Q ss_pred             hhcccCCh
Q 018408          261 MQFTVESP  268 (356)
Q Consensus       261 ~~~~~e~p  268 (356)
                      ..+.||++
T Consensus       378 ~~~~~~~~  385 (393)
T PRK09705        378 LRFAPARF  385 (393)
T ss_pred             HHhccccc
Confidence            45567764

>TIGR00889 2A0110 nucleoside transporter

Probab=99.48  E-value=9.6e-12  Score=115.34  Aligned_cols=166  Identities=17%  Similarity=0.092  Sum_probs=113.5

Q ss_pred             HHHHHHHHhhhhcchhhH-HHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhch-hHHHHHhHHHHHHHHHH
Q 018408           93 SMSNFLFGYHIGVMNGPI-VSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGC-RRTFQIDTIPLILGAII  170 (356)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr-r~~~~~~~~~~~i~~~~  170 (356)
                      ++..+.+....+...+.+ +++.+++|+  +..+.|++.+++.++..++++++|.++||+|| |+++.++.++..++..+
T Consensus         8 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~--s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~   85 (418)
T TIGR00889         8 KFMSFLQWFIWGSWLVTLGSYMSKTLHF--SGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFF   85 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            344444445555554444 566677888  67779999999999999999999999999965 77888888888888888


Q ss_pred             HHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHH--------hhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCch
Q 018408          171 SAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYIS--------EVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHW  242 (356)
Q Consensus       171 ~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~--------e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~  242 (356)
                      ..+.++++.+++.|++.|++.+...+...+...        |......|.+..|      .+|.++++.+++.+..... 
T Consensus        86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~-  158 (418)
T TIGR00889        86 AAQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELS-  158 (418)
T ss_pred             HHHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccch-
Confidence            888889999999999999977666555444321        2222223444444      3567777777776633222 


Q ss_pred             hHHHHHHhHHHHHHHHHHhhcccCCh
Q 018408          243 WRTMLYIASLPGFILALGMQFTVESP  268 (356)
Q Consensus       243 w~~~~~~~~~~~~~~~~~~~~~~e~p  268 (356)
                      |.. |++.++..++..+..+++||+|
T Consensus       159 ~~~-f~~~~~~~~~~~~~~~~~~e~~  183 (418)
T TIGR00889       159 NIQ-LYITAGSSALLGVFALTLPDIP  183 (418)
T ss_pred             hHH-HHHHHHHHHHHHHHHhcCCCCC
Confidence            543 4455555555555566778764

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.47  E-value=4.3e-13  Score=118.56  Aligned_cols=174  Identities=17%  Similarity=0.158  Sum_probs=138.4

Q ss_pred             hHHHHHHHHHHHHHHHhhhhcchhhHH-HHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhh--chhHHHHHhH
Q 018408           85 AFPHVLIASMSNFLFGYHIGVMNGPIV-SIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKL--GCRRTFQIDT  161 (356)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--Grr~~~~~~~  161 (356)
                      +.+.++.++++++........+..+.| ++.|..|+  +...+++..+.+-++.+.|.+++|+++||+  |||....+.+
T Consensus       250 ~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~--s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~  327 (448)
T COG2271         250 KNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGF--SLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIF  327 (448)
T ss_pred             cChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCC--CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHH
Confidence            345688888888888877777777776 45566788  455588999999999999999999999996  7887665544


Q ss_pred             -HHHHHHHHHHHHhh--hHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHH-HHHHHHHhhhccC
Q 018408          162 -IPLILGAIISAQAH--SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCL-GIITSLFLGIPAE  237 (356)
Q Consensus       162 -~~~~i~~~~~~~~~--~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~-g~~~~~~i~~~l~  237 (356)
                       ++..++.+....++  |+....++.+++|+...+..-.......|..|++--|++.|+...+..+ |..++....+.+.
T Consensus       328 ~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~  407 (448)
T COG2271         328 MLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIA  407 (448)
T ss_pred             HHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeE
Confidence             33334434444444  5678888899999998888888888899999999999999999988888 9999999999998


Q ss_pred             CCCchhHHHHHHhHHHHHHHHHHh
Q 018408          238 DDPHWWRTMLYIASLPGFILALGM  261 (356)
Q Consensus       238 ~~~~~w~~~~~~~~~~~~~~~~~~  261 (356)
                      |..| |...|++..+.++++.++.
T Consensus       408 d~~g-W~g~Fi~~~~~a~l~~lll  430 (448)
T COG2271         408 DTWG-WDGGFIVLSIAALLAILLL  430 (448)
T ss_pred             ecCC-CcchHHHHHHHHHHHHHHH
Confidence            8877 9999998777776665543

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.47  E-value=7.3e-13  Score=125.77  Aligned_cols=144  Identities=20%  Similarity=0.102  Sum_probs=110.3

Q ss_pred             hhhHHHHH-HHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHh--hhHHHHHHH
Q 018408          107 NGPIVSIA-KELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQA--HSLDEMLWG  183 (356)
Q Consensus       107 ~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~  183 (356)
                      ...+|.+. +++|+  +..+.+++.+.+.++..++.++.|+++||+|||+++.++.++..+..++....  .+.+.+.+.
T Consensus       295 ~~~lp~~l~~~~g~--~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (496)
T PRK03893        295 QALLPTYLKTDLGY--DPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLL  372 (496)
T ss_pred             HHHHHHHHHhhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence            34556555 57888  56678999999999999999999999999999999888877666665544333  233344444


Q ss_pred             HHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHH
Q 018408          184 RFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLP  253 (356)
Q Consensus       184 ~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~  253 (356)
                      .++.++...+..+..+.++.|.+|+++||+.+++.+....+|..++|.+++.+.++.+ |+..+...+..
T Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g-~~~~~~~~~~~  441 (496)
T PRK03893        373 LFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLD-LGTALASLSFS  441 (496)
T ss_pred             HHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCC-hHHHHHHHHHH
Confidence            4544444444456677889999999999999999999999999999999999999888 88777654433

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.47  E-value=3.6e-12  Score=116.88  Aligned_cols=151  Identities=14%  Similarity=0.153  Sum_probs=119.9

Q ss_pred             hhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 018408          107 NGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFL  186 (356)
Q Consensus       107 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l  186 (356)
                      ...+|.+.++.|.  +....++..+...++..++.++.|+++||+|+|+.+..+.++.+++.+...  . ....+...++
T Consensus       220 ~~~lp~~~~~~g~--s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l  294 (381)
T PRK03633        220 YGLMPLYLNHQGM--SDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFI  294 (381)
T ss_pred             HHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHH
Confidence            3456777777777  555688888889999999999999999999999999888777777655443  2 2333456677


Q ss_pred             HHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHHHHHHHhhc
Q 018408          187 VGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQF  263 (356)
Q Consensus       187 ~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~  263 (356)
                      .|++.+...+....++.|..|+++++...+.++....+|.+++|.+++.+.++.+ |++.|.+.+.+.++..+..+.
T Consensus       295 ~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~~  370 (381)
T PRK03633        295 LGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYS-DNLLFIMIASVSFIYLLMLLR  370 (381)
T ss_pred             HHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHHHHh
Confidence            7877777788888889999998888888888888999999999999999999888 899998877777666554443

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.45  E-value=7.5e-12  Score=116.79  Aligned_cols=177  Identities=16%  Similarity=0.090  Sum_probs=141.9

Q ss_pred             HHHHHHHHHHHHhhhhcchhhH-HHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchh--HHHHHhHHHHH
Q 018408           89 VLIASMSNFLFGYHIGVMNGPI-VSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCR--RTFQIDTIPLI  165 (356)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr--~~~~~~~~~~~  165 (356)
                      ++...+++++..-+.+.+.... .+..+++|+  +..+...+..+..+..++|++++|++.||+|.|  ++++++.+++.
T Consensus       283 ~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~--s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~  360 (477)
T PF11700_consen  283 LFLFLIAYFLYSDGVNTIISFAGIYATEVLGM--STTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWI  360 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHH
Confidence            4444444444333333333333 345568999  555577778888899999999999999999999  88888887776


Q ss_pred             HHHHHHHH--------hhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccC
Q 018408          166 LGAIISAQ--------AHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAE  237 (356)
Q Consensus       166 i~~~~~~~--------~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~  237 (356)
                      +..+...+        .++.+.+.+.-++.|++.|..++..-++.+|+.|+.+.+..+|++.+..-..+.+||++.+.+.
T Consensus       361 ~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~  440 (477)
T PF11700_consen  361 IIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLIT  440 (477)
T ss_pred             HHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66655555        5677889999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCchhHHHHHHhHHHHHHHHHHhhcccCC
Q 018408          238 DDPHWWRTMLYIASLPGFILALGMQFTVES  267 (356)
Q Consensus       238 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~  267 (356)
                      +..++-|+.+....++.+++++++++++..
T Consensus       441 ~~tg~~r~g~~~l~~lf~~gl~ll~~v~~~  470 (477)
T PF11700_consen  441 DATGSQRYGFLFLLVLFLIGLILLFFVDVE  470 (477)
T ss_pred             HHhCCchhHHHHHHHHHHHHHHHHhhccch
Confidence            988878888888888888887777666543

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.45  E-value=2.4e-12  Score=118.69  Aligned_cols=137  Identities=21%  Similarity=0.177  Sum_probs=109.8

Q ss_pred             HHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHH-HHHHhhhHHHHHHHHHHHHh
Q 018408          111 VSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAI-ISAQAHSLDEMLWGRFLVGL  189 (356)
Q Consensus       111 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~l~G~  189 (356)
                      +++.+++|+  +..+.+++.+...++..++.++.|++.||+|||+.+.++.++.++..+ .....++.+.+.+..++.|+
T Consensus       263 ~~~~~~~g~--s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (405)
T TIGR00891       263 TYLKADLGL--SPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQM  340 (405)
T ss_pred             HHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            345567788  566688999999999999999999999999999998887766544333 33334555666666677777


Q ss_pred             hhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHH
Q 018408          190 GIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYI  249 (356)
Q Consensus       190 ~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~  249 (356)
                      +.++..+..+.++.|.+|+++|++++|+.+....+|..++|.+.+.+.++.|.|+..+..
T Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       341 LVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS  400 (405)
T ss_pred             HHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence            777777888889999999999999999999999999999999999999887656655444

>PRK03545 putative arabinose transporter; Provisional

Probab=99.45  E-value=1e-11  Score=114.18  Aligned_cols=148  Identities=13%  Similarity=0.098  Sum_probs=116.3

Q ss_pred             HHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHH-HHHHhhhHHHHHHHHHHHH
Q 018408          110 IVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAI-ISAQAHSLDEMLWGRFLVG  188 (356)
Q Consensus       110 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~l~G  188 (356)
                      .+.+.+.+|.+  ....+++.+...++..++.++.|+++||+|||.... +..+..++.. .....++.+.++++.++.|
T Consensus       229 ~~~l~~~~g~s--~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g  305 (390)
T PRK03545        229 EPFVQQVAGLS--ENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIFWG  305 (390)
T ss_pred             HHHHHHhcCCC--ccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence            34556667874  455888888899999999999999999999887544 4444444433 3345667777888888899


Q ss_pred             hhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHHHHHHHhh
Q 018408          189 LGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQ  262 (356)
Q Consensus       189 ~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~  262 (356)
                      ++.+...+.....+.+..| +.|++++++++....+|..+|+.+++.+.++.+ ++..|++.+++.+++.+...
T Consensus       306 ~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g-~~~~~~~~~~~~~~~~~~~~  377 (390)
T PRK03545        306 IAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLG-LSSIGYVGAALALAALVWSI  377 (390)
T ss_pred             HHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hhHHHHHHHHHHHHHHHHHH
Confidence            9887776777778888876 678999999999999999999999999999988 99999998877777665443

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.44  E-value=8e-12  Score=117.22  Aligned_cols=156  Identities=14%  Similarity=0.058  Sum_probs=105.8

Q ss_pred             cchhhHHHHHH-HhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhh--chhHHHH-HhHHHHHHHHHHHHH--hhhHH
Q 018408          105 VMNGPIVSIAK-ELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKL--GCRRTFQ-IDTIPLILGAIISAQ--AHSLD  178 (356)
Q Consensus       105 ~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--Grr~~~~-~~~~~~~i~~~~~~~--~~~~~  178 (356)
                      ....++|.+.+ +.|+  +..+.+++...+.++..++.++.|+++||+  |||+... ....+..++.++...  ..+..
T Consensus       271 ~~~~~~P~~l~~~~g~--s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~  348 (452)
T PRK11273        271 GILDWSPTYLKEVKHF--ALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPT  348 (452)
T ss_pred             HHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChH
Confidence            34445665554 4688  445578888888899999999999999999  5554322 222333333332222  23444


Q ss_pred             HHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHH-HHHhhhccCCCCchhHHHHHHhHHHHHHH
Q 018408          179 EMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIIT-SLFLGIPAEDDPHWWRTMLYIASLPGFIL  257 (356)
Q Consensus       179 ~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~-~~~i~~~l~~~~~~w~~~~~~~~~~~~~~  257 (356)
                      ..+++.++.|.+..........+..|.+|++.||+++|+.+....+|+.+ +|.+.+.+.++.| |+..|++.++.++++
T Consensus       349 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g-~~~~f~~~~~~~~~~  427 (452)
T PRK11273        349 VDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILA  427 (452)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhc-chHHHHHHHHHHHHH
Confidence            44445555565443333344456789999999999999998888887654 7999999999888 999999887777776


Q ss_pred             HHHhhc
Q 018408          258 ALGMQF  263 (356)
Q Consensus       258 ~~~~~~  263 (356)
                      ++....
T Consensus       428 ~~~~~~  433 (452)
T PRK11273        428 VILLIV  433 (452)
T ss_pred             HHHHHH
Confidence            655444

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.44  E-value=4.5e-12  Score=117.70  Aligned_cols=158  Identities=15%  Similarity=0.034  Sum_probs=128.5

Q ss_pred             hhhHHHHHHH-hCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHH
Q 018408          107 NGPIVSIAKE-LGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRF  185 (356)
Q Consensus       107 ~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  185 (356)
                      ....|.+.++ +|.  +....+++.+...++..++.++.+++.||.++++.+..+.++.+++.++..+.++...++++.+
T Consensus       243 ~~~~p~~~~~~~g~--~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (417)
T PRK10489        243 RVLYPALADEVWQM--GAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLA  320 (417)
T ss_pred             HHhhHHHHHhccCC--ChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHH
Confidence            3445655555 788  4556889999999999999999999999988888888888888888877777888877788888


Q ss_pred             HHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHH-HHHHHHhhcc
Q 018408          186 LVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPG-FILALGMQFT  264 (356)
Q Consensus       186 l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~-~~~~~~~~~~  264 (356)
                      +.|++.+...+...+++.|..|++.||+++++++....+|..+++.+.+.+.+..+ ++..+++.++.. +++.+....+
T Consensus       321 ~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~  399 (417)
T PRK10489        321 LFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMT-PVASASASGFGLLIIGVLLLLVL  399 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhc-hhhHHHHHHHHHHHHHHHHHHhc
Confidence            99998888878888899999999999999999999999999999999999998877 666666655444 4445555556


Q ss_pred             cCC
Q 018408          265 VES  267 (356)
Q Consensus       265 ~e~  267 (356)
                      ++.
T Consensus       400 ~~~  402 (417)
T PRK10489        400 GEL  402 (417)
T ss_pred             ccc
Confidence            665

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.44  E-value=1.8e-11  Score=112.61  Aligned_cols=176  Identities=10%  Similarity=-0.010  Sum_probs=127.9

Q ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHH--HHHHHHHHHHHHhH-HhhhhhhchhHHHHHhHHHH-
Q 018408           89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVV--SIFIAGAFVGSISS-GSLADKLGCRRTFQIDTIPL-  164 (356)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~-g~l~dr~Grr~~~~~~~~~~-  164 (356)
                      .+.+...++..+...+...+.+|.+.++.|.  +..+.|++.  +...+...+..++. ++..||+||||.+++...+. 
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~--~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~   80 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLREDGA--PLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLV   80 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHH
Confidence            4556667788888888899999999999998  666788863  55566676777777 55789999999876655332 


Q ss_pred             HHHHHHHH-H--hhh-HHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCC
Q 018408          165 ILGAIISA-Q--AHS-LDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP  240 (356)
Q Consensus       165 ~i~~~~~~-~--~~~-~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~  240 (356)
                      ++.....+ +  ..+ ...++...++.++..+...+....+..|..+.++++...+....+..+|..+++...+++.++.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~  160 (390)
T TIGR02718        81 SACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKF  160 (390)
T ss_pred             HHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            22222222 1  222 2333444555666677777777878889888888888888888888999999998888888888


Q ss_pred             chhHHHHHHhHHHHHHHHHHhhcccCC
Q 018408          241 HWWRTMLYIASLPGFILALGMQFTVES  267 (356)
Q Consensus       241 ~~w~~~~~~~~~~~~~~~~~~~~~~e~  267 (356)
                      + |+..|++.++..++..+..++++|+
T Consensus       161 g-w~~~f~~~a~l~~~~~~~~~~~~~~  186 (390)
T TIGR02718       161 G-QRPAFLLVACVPLASLVCVLWLKDR  186 (390)
T ss_pred             C-HHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            8 9999999888777666555555543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00895 2A0115 benzoate transport

Probab=99.43  E-value=5.9e-12  Score=115.70  Aligned_cols=133  Identities=21%  Similarity=0.171  Sum_probs=105.8

Q ss_pred             hhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhhhHHHHH
Q 018408          102 HIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEML  181 (356)
Q Consensus       102 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~  181 (356)
                      .........|.+.+++|.  +..+.+++.+...++..++.++.|+++||+|||+.+....+...+..++.....+...++
T Consensus       265 ~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (398)
T TIGR00895       265 GVYFLTNWLPKLMVELGF--SLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLL  342 (398)
T ss_pred             HHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHH
Confidence            333445556778888888  455588889999999999999999999999999554444333333333333355667777


Q ss_pred             HHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhcc
Q 018408          182 WGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPA  236 (356)
Q Consensus       182 ~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l  236 (356)
                      +..++.|++.+...+....++.|.+|+++|++++|+.+....+|..++|.+++.+
T Consensus       343 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       343 LLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            7889999999999999999999999999999999999999999999999998865

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.42  E-value=1.1e-12  Score=122.53  Aligned_cols=156  Identities=18%  Similarity=0.198  Sum_probs=116.6

Q ss_pred             hHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhh----hchhH-HHHHhHHHHHHHHHHHHHhhh------H
Q 018408          109 PIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADK----LGCRR-TFQIDTIPLILGAIISAQAHS------L  177 (356)
Q Consensus       109 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~Grr~-~~~~~~~~~~i~~~~~~~~~~------~  177 (356)
                      ..+++.+++|+  +..+.|++.++..+..++..++.|+++||    +|||| .++++....+++.+++...++      .
T Consensus        22 l~~~~~~~~g~--s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~   99 (437)
T TIGR00792        22 LLFFYTDVLGL--SAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKL   99 (437)
T ss_pred             HHHHHHHccCC--CHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHH
Confidence            34566778898  67779999999999999999999999998    68855 566677888887777766543      3


Q ss_pred             HHHHHHHHHHHhhhhhhhhHHHHHHHhhc-CCCccchhHHHhHHHHHHHHHHHHHhhhccC-------CCCchhHHHHHH
Q 018408          178 DEMLWGRFLVGLGIGVNTVLVPIYISEVA-PTKYRGSLGTLCQVGTCLGIITSLFLGIPAE-------DDPHWWRTMLYI  249 (356)
Q Consensus       178 ~~~~~~~~l~G~~~g~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~-------~~~~~w~~~~~~  249 (356)
                      ..+++.+++.+++.+.......++..|+. ++++|++..++.+.+..+|..+++.+.+.+.       +..+ |++.+++
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g-~~~~~~i  178 (437)
T TIGR00792       100 VYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFG-WFMFALV  178 (437)
T ss_pred             HHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccc-HHHHHHH
Confidence            45566678888888877777788888887 4688999999988888887776655543332       2334 9999888


Q ss_pred             hHHHHHHHHHH-hhcccCC
Q 018408          250 ASLPGFILALG-MQFTVES  267 (356)
Q Consensus       250 ~~~~~~~~~~~-~~~~~e~  267 (356)
                      .+++.++..+. .++.+|+
T Consensus       179 ~~~l~~~~~~~~~~~~~e~  197 (437)
T TIGR00792       179 LALIGVVSLIICFFGTKER  197 (437)
T ss_pred             HHHHHHHHHHHHHcCCEec
Confidence            87776666544 4456664

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.42  E-value=2e-11  Score=112.28  Aligned_cols=177  Identities=16%  Similarity=0.049  Sum_probs=129.1

Q ss_pred             HHHHHHHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHH
Q 018408           87 PHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLIL  166 (356)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i  166 (356)
                      .....+.+.......+......+...+.++.|+  +...+.+.+....+...+..+++.++.||+|||+.++++..++.+
T Consensus       270 ~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~--~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~  347 (485)
T KOG0569|consen  270 PLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGF--TPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAV  347 (485)
T ss_pred             HHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence            334444444444545556666667788899998  555577888888999999999999999999999999999999988


Q ss_pred             HHHHHHHhh---hHH------HHHHHHHHHHhhhh-hhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhcc
Q 018408          167 GAIISAQAH---SLD------EMLWGRFLVGLGIG-VNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPA  236 (356)
Q Consensus       167 ~~~~~~~~~---~~~------~~~~~~~l~G~~~g-~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l  236 (356)
                      ..+++....   +..      ..+++.++..++.+ +..|..+-+.+|++|.+.|..++++..+...+..++-......+
T Consensus       348 ~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l  427 (485)
T KOG0569|consen  348 ALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPL  427 (485)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            887776431   111      12333444333333 23577888999999999999999999888888888877777777


Q ss_pred             CCCCchhHHHHHHhHHHHHHHH-HHhhcccCC
Q 018408          237 EDDPHWWRTMLYIASLPGFILA-LGMQFTVES  267 (356)
Q Consensus       237 ~~~~~~w~~~~~~~~~~~~~~~-~~~~~~~e~  267 (356)
                      .+..|.  +.|++.++++++.. ..+..+|||
T Consensus       428 ~~~~g~--~~filF~i~~~~~~i~~~~~lPET  457 (485)
T KOG0569|consen  428 QNVIGP--YVFILFVIPLAIFLIYLYRYLPET  457 (485)
T ss_pred             HHHhcc--hhhHHHHHHHHHHHHHHHHhCccc
Confidence            776663  56666666666554 456779999

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.41  E-value=1.9e-11  Score=112.19  Aligned_cols=148  Identities=13%  Similarity=0.029  Sum_probs=119.2

Q ss_pred             hhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 018408          107 NGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFL  186 (356)
Q Consensus       107 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l  186 (356)
                      ....|.+.++.|.  +....+.+.+...++..++.++.|++.||+|+|+.+..+.++.+++.+..+..++.+.+++..++
T Consensus       225 ~~~~~~~~~~~g~--s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  302 (382)
T PRK11128        225 YGFSAIYWQAAGY--SASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQIL  302 (382)
T ss_pred             HHHHHHHHHHCCC--CHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            3344555567787  55558888888888888999999999999999999999999988888888888899988999999


Q ss_pred             HHhhhhhhhhHHHHHHHhhcCCCccchhHHHhH-HHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHHHHHH
Q 018408          187 VGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQ-VGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILAL  259 (356)
Q Consensus       187 ~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~-~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~  259 (356)
                      .|++.+...+....++.+. +++++++..++++ ....+|..++|.++|.+.+..+ + ..++..+++.+++++
T Consensus       303 ~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g-~-~~~~~~~~~~~~~~~  373 (382)
T PRK11128        303 HCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLG-A-GVFWVMALVALPALF  373 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-H-HHHHHHHHHHHHHHH
Confidence            9999998888888888886 5566788888875 6667888999999999999887 5 355555555554443

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.40  E-value=2.9e-14  Score=134.71  Aligned_cols=234  Identities=16%  Similarity=0.171  Sum_probs=3.0

Q ss_pred             HHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHH
Q 018408           92 ASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIIS  171 (356)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~  171 (356)
                      +++..+.+....+.....+..+.+.|++  +.++.|++.+.+-++..+..++..++.+|..|-|.+-+|.++++++++++
T Consensus         8 ~~~~~~~q~~~~g~~~~~lttiErRF~l--~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~   85 (539)
T PF03137_consen    8 LCLLGLFQMMVSGYVNSSLTTIERRFGL--SSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLF   85 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHH
Confidence            3444444466666777778899999999  56669999999999999999999999999999999999999999999888


Q ss_pred             HHh-------------------------h-------------------------hHHHHHHHHHHHHhhhhhhhhHHHHH
Q 018408          172 AQA-------------------------H-------------------------SLDEMLWGRFLVGLGIGVNTVLVPIY  201 (356)
Q Consensus       172 ~~~-------------------------~-------------------------~~~~~~~~~~l~G~~~g~~~~~~~~~  201 (356)
                      ++-                         .                         -+..++++.++.|+|....+++..+|
T Consensus        86 ~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tY  165 (539)
T PF03137_consen   86 ALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITY  165 (539)
T ss_dssp             ------------------------------------------------------------------SSS-----------
T ss_pred             hccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeee
Confidence            640                         0                         02456778999999999999999999


Q ss_pred             HHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCC---------------------chhHHHHHHhHHHHHHHHHH
Q 018408          202 ISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP---------------------HWWRTMLYIASLPGFILALG  260 (356)
Q Consensus       202 ~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~---------------------~~w~~~~~~~~~~~~~~~~~  260 (356)
                      +-|..++++-+..+|+......+|.++|.++++.+.+..                     |.|..-|++.+++.++..+.
T Consensus       166 iDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aip  245 (539)
T PF03137_consen  166 IDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIP  245 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999888665321                     23555566666666666666


Q ss_pred             hhcccCChHHHHhcCCHHHHHHHHHHHcCCcchHHHHHHHH--HHHHhcCCCCccchhhhcccCcchhhHHHH
Q 018408          261 MQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQ--LVIKKDGSDLDSQWSELLEEPHSRVAFIGD  331 (356)
Q Consensus       261 ~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  331 (356)
                      ++++|+.-...  ++..++.+..  +.+.++..+++.++.+  ....+.-++.....+.+++||.+....++.
T Consensus       246 l~~FPk~lp~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~  314 (539)
T PF03137_consen  246 LFFFPKKLPGT--SERQEEKESS--ERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAG  314 (539)
T ss_dssp             -------------------------------------------------------------------------
T ss_pred             HHcCCccCCCc--ccccchhhhh--hcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHH
Confidence            67777652111  0000110100  0000000000000000  001122234456888999999988888877

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.39  E-value=2.1e-11  Score=113.79  Aligned_cols=170  Identities=21%  Similarity=0.165  Sum_probs=110.5

Q ss_pred             HHHHHHHHHHHhhhhcchhhHHHHH-HHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhh--chhHHH-HHhHHHHH
Q 018408           90 LIASMSNFLFGYHIGVMNGPIVSIA-KELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKL--GCRRTF-QIDTIPLI  165 (356)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--Grr~~~-~~~~~~~~  165 (356)
                      +.+.+..+...........++|.+. +++|+  +..+.+...+.+.++..++.++.|+++||+  ++|+.. ....+...
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~--s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~  323 (434)
T PRK11663        246 WLLSFSYVLVYVVRAAINDWGNLYMSETLGV--DLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGIL  323 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHH
Confidence            3333333333333334444555554 66788  555688889999999999999999999999  333322 22211111


Q ss_pred             HHHHHHH--HhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchh
Q 018408          166 LGAIISA--QAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWW  243 (356)
Q Consensus       166 i~~~~~~--~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w  243 (356)
                      +...+..  ...+...+++..+..|++..+.......++.|.+|+++||+++|+.++...+|..++|.+.+.+.++.+ |
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g-~  402 (434)
T PRK11663        324 LSVGSLWLMPFASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWH-W  402 (434)
T ss_pred             HHHHHHHHcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcc-c
Confidence            1111111  122333333334445544333333445577899999999999999999999999999999999999888 9


Q ss_pred             HHHHHHhHHHHHHHHHHhh
Q 018408          244 RTMLYIASLPGFILALGMQ  262 (356)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~  262 (356)
                      +..|++.+++.++..+...
T Consensus       403 ~~~f~~~~~~~~~~~~~~~  421 (434)
T PRK11663        403 TGFFVVISIAAGISALLLL  421 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999988877776655443

>PRK15075 citrate-proton symporter; Provisional

Probab=99.39  E-value=3.7e-11  Score=112.14  Aligned_cols=137  Identities=18%  Similarity=0.086  Sum_probs=97.5

Q ss_pred             hhcchhhHHHHHH-HhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHH-HH---HhhhH
Q 018408          103 IGVMNGPIVSIAK-ELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAII-SA---QAHSL  177 (356)
Q Consensus       103 ~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~-~~---~~~~~  177 (356)
                      ........|.+.+ .+|+  +..+.++....+.++..++.+++|+++||+|||+.++.+.++..+..++ ..   ..++.
T Consensus       254 ~~~~~~~~p~~l~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (434)
T PRK15075        254 FYLITVYTPTFGKTVLHL--SAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSF  331 (434)
T ss_pred             HHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence            3344455665554 4788  4555778888888899999999999999999999888765544332221 11   12333


Q ss_pred             HHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHh-HHHHHHHHHHHHHhhhccCCCCc
Q 018408          178 DEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLC-QVGTCLGIITSLFLGIPAEDDPH  241 (356)
Q Consensus       178 ~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~-~~~~~~g~~~~~~i~~~l~~~~~  241 (356)
                      ..+.+..++.|++.+...+....++.|.+|++.|++++++. +++..+++.++|.+.+.+.++.+
T Consensus       332 ~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g  396 (434)
T PRK15075        332 ARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTG  396 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcC
Confidence            34444456667777777777778899999999999999985 44555567889999998888766

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.39  E-value=3e-11  Score=112.41  Aligned_cols=137  Identities=19%  Similarity=0.131  Sum_probs=100.6

Q ss_pred             hhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 018408          107 NGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFL  186 (356)
Q Consensus       107 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l  186 (356)
                      ...+|.+.++.|.  +....+.+.+...++..++.++.|++.||+|||+.+..+.++.++..+.....++.....+..++
T Consensus       251 ~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (426)
T PRK12307        251 FGLLPTYLAGEGF--DTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACL  328 (426)
T ss_pred             HHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHH
Confidence            3455666667777  55567888888889999999999999999999999988887776665544433321112222233


Q ss_pred             HHh--hhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHH
Q 018408          187 VGL--GIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTM  246 (356)
Q Consensus       187 ~G~--~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~  246 (356)
                      .|+  +..+..+..+.++.|.+|++.||+++|+......+|+.++|.+.+.+.+..+ +...
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g-~~~~  389 (426)
T PRK12307        329 FGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMG-LGAA  389 (426)
T ss_pred             HHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHccc-HHHH
Confidence            333  2233345566788999999999999999999999999999999999988776 5443

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.39  E-value=6e-12  Score=114.26  Aligned_cols=131  Identities=18%  Similarity=0.163  Sum_probs=113.8

Q ss_pred             hhHHHHHHH-hCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhhh-HHHHHHHHH
Q 018408          108 GPIVSIAKE-LGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHS-LDEMLWGRF  185 (356)
Q Consensus       108 ~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~  185 (356)
                      ...|.+.++ +|.  +..+.+++.+...++..++.++.+++.||+|||+.+..+..+.+++..+..+.++ .+.+++..+
T Consensus       232 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (365)
T TIGR00900       232 ALFPYVQSKYLGR--GSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWF  309 (365)
T ss_pred             HHhHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Confidence            445666654 777  5666889999999999999999999999999999999888888888777777764 778888899


Q ss_pred             HHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCC
Q 018408          186 LVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP  240 (356)
Q Consensus       186 l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~  240 (356)
                      +.|++.+...+....++.|.+|+++|++..++.+....+|..+++.+++.+.+..
T Consensus       310 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~  364 (365)
T TIGR00900       310 AIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHL  364 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            9999999999999999999999999999999999999999999999999887643

>TIGR00898 2A0119 cation transport protein

Probab=99.38  E-value=8.5e-12  Score=118.77  Aligned_cols=135  Identities=19%  Similarity=0.081  Sum_probs=109.0

Q ss_pred             HHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhhhH--HHHHHHHHHHHhhhhhhhhHHHHHHHhhcC
Q 018408          130 VSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSL--DEMLWGRFLVGLGIGVNTVLVPIYISEVAP  207 (356)
Q Consensus       130 ~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p  207 (356)
                      ..+..+..+++.++.+++.||+|||+.+.++.++.+++.++..+.++.  ...++..++.+++.+..++..+.+.+|.+|
T Consensus       361 ~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p  440 (505)
T TIGR00898       361 LFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYP  440 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            344556677889999999999999999999999988888877776543  444555666777777788888999999999


Q ss_pred             CCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHHHHHHHhhcccCC
Q 018408          208 TKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVES  267 (356)
Q Consensus       208 ~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~  267 (356)
                      ++.|++++|+.+....+|.+++|.+.+ +. ..+ +...+++.++..++..+..+++||+
T Consensus       441 ~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~-~~~-~~~~~~~~~~~~~~~~~~~~~lpet  497 (505)
T TIGR00898       441 TVVRNLGVGVCSTMARVGSIISPFLVY-LG-EKW-LFLPLVLFGGLALLAGILTLFLPET  497 (505)
T ss_pred             HHHHhhhHhHHHHHHHHHHHHHhHHHH-HH-HHH-HhhHHHHHHHHHHHHHHHHHcCcCC
Confidence            999999999999999999999999988 33 333 5667777777777777777788987

>PRK10504 putative transporter; Provisional

Probab=99.37  E-value=2.8e-11  Score=114.21  Aligned_cols=137  Identities=15%  Similarity=0.117  Sum_probs=107.8

Q ss_pred             hhhcchhhHHHHHH-HhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHh---hhH
Q 018408          102 HIGVMNGPIVSIAK-ELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQA---HSL  177 (356)
Q Consensus       102 ~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~---~~~  177 (356)
                      .........|++.+ .+|.  +....+++.....++..++.++.|++.||+|||+++.++.++.++..++..+.   .+.
T Consensus       276 ~~~~~~~~~~~~~~~~~g~--~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (471)
T PRK10504        276 GSGMLPFMTPVFLQIGLGF--SPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWY  353 (471)
T ss_pred             HHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccH
Confidence            33444455666655 4676  66678888888888888888999999999999999998888888777666553   233


Q ss_pred             HHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCC
Q 018408          178 DEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP  240 (356)
Q Consensus       178 ~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~  240 (356)
                      ..+.+..++.|++.+...+....++.+..|++.|+.+.++.++...+|..+++.+++.+.+..
T Consensus       354 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~  416 (471)
T PRK10504        354 YLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLF  416 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344455677888888888888899999999999999999999999999999998888765543

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.37  E-value=1.6e-11  Score=113.65  Aligned_cols=165  Identities=14%  Similarity=0.097  Sum_probs=109.8

Q ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHH-HHHhHHHHHHHH
Q 018408           90 LIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRT-FQIDTIPLILGA  168 (356)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~-~~~~~~~~~i~~  168 (356)
                      +...+.++............+|.+.++++.+.+..+.+.+.+...++..++.+++|+++||++||+. +....++.+++.
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~  324 (412)
T TIGR02332       245 MLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGW  324 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHH
Confidence            3334444444444445566777777775433355667888899999999999999999999997774 333444444433


Q ss_pred             HHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHH
Q 018408          169 IISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLY  248 (356)
Q Consensus       169 ~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~  248 (356)
                      ++.....+....+++-++.+++.....+.......|.+|+++|++++|+.+....+|.+++|.+.+.+.+..++|++.++
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~  404 (412)
T TIGR02332       325 LLASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLW  404 (412)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHH
Confidence            22222222222222222333333333344445557889999999999999999999999999999999998766998888


Q ss_pred             HhHHHH
Q 018408          249 IASLPG  254 (356)
Q Consensus       249 ~~~~~~  254 (356)
                      +.++..
T Consensus       405 ~~~~~~  410 (412)
T TIGR02332       405 FVAALL  410 (412)
T ss_pred             HHHHHH
Confidence            766543

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.37  E-value=7.3e-11  Score=110.08  Aligned_cols=157  Identities=12%  Similarity=0.009  Sum_probs=99.2

Q ss_pred             chhhHHHH-HHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHH--H--hhhHHHH
Q 018408          106 MNGPIVSI-AKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISA--Q--AHSLDEM  180 (356)
Q Consensus       106 ~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~--~--~~~~~~~  180 (356)
                      ...++|.+ .+.+|.  +..+.+...++..++..++.++.|+++||+|||+.+.++.++.++..+...  .  ..+....
T Consensus       262 ~~~~lp~~l~~~~g~--s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (432)
T PRK10406        262 FTTYMQKYLVNTAGM--HANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAA  339 (432)
T ss_pred             HHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence            34445544 456787  455577777777777888899999999999999988776655444333221  1  1222222


Q ss_pred             HHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHH-HHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHHHHHH
Q 018408          181 LWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVG-TCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILAL  259 (356)
Q Consensus       181 ~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~-~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~  259 (356)
                      +..-++.+++.+...+....+++|++|++.|++++|+.+.. ..+++...|.+.+.+ +..+.|...+++.++..++..+
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~~~  418 (432)
T PRK10406        340 FGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVVAFL  418 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHHH
Confidence            22222233334444455677889999999999999997654 434444577777755 4444366666666666666665


Q ss_pred             Hhhccc
Q 018408          260 GMQFTV  265 (356)
Q Consensus       260 ~~~~~~  265 (356)
                      ..++++
T Consensus       419 ~~~~l~  424 (432)
T PRK10406        419 VSLMLH  424 (432)
T ss_pred             HHHHhh
Confidence            555543

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.37  E-value=1.9e-11  Score=115.36  Aligned_cols=153  Identities=22%  Similarity=0.182  Sum_probs=132.6

Q ss_pred             cchhhHHHHH-HHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhhhHHHHHHH
Q 018408          105 VMNGPIVSIA-KELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWG  183 (356)
Q Consensus       105 ~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  183 (356)
                      .+...+|.+. +.+|.  +....|++.+++.+|.++|.++.+++.+|+++++.+..+.++.+++.+..+++++.+..+++
T Consensus       236 a~~aLlPl~a~~~l~~--~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~  313 (524)
T PF05977_consen  236 AVWALLPLFARDVLGG--GASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIA  313 (524)
T ss_pred             HHHHhhhHHHHHHhCC--cHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence            3344567665 45676  56679999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHHHHHHH
Q 018408          184 RFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALG  260 (356)
Q Consensus       184 ~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~  260 (356)
                      .++.|++.........+.+.+..|++.||+.++++++....+..+|..+.|.+.+..| .+..+.++++..++..++
T Consensus       314 l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g-~~~al~~a~~~lll~~~~  389 (524)
T PF05977_consen  314 LFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFG-VRTALLIAGAALLLSALI  389 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHH
Confidence            9999999999989999999999999999999999999999999999999999998888 777777776655554443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.36  E-value=1.8e-11  Score=114.37  Aligned_cols=119  Identities=23%  Similarity=0.181  Sum_probs=98.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHh-hhHHHHHHHHHHHHhhhhhhhhHHHHH
Q 018408          123 PILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQA-HSLDEMLWGRFLVGLGIGVNTVLVPIY  201 (356)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~l~G~~~g~~~~~~~~~  201 (356)
                      ....+++.+...++.+++.+++++++||+|+|+++.++.++.+++.++..+. ++.+.+++..++.|++.+...+...++
T Consensus       256 ~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  335 (437)
T TIGR00792       256 PELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWAL  335 (437)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3446677778889999999999999999999999999988888887776655 356666777888999999988999999


Q ss_pred             HHhhcC-------CCccchhHHHhHHHHHHHHHHHHHhhhccCCCCc
Q 018408          202 ISEVAP-------TKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPH  241 (356)
Q Consensus       202 ~~e~~p-------~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~  241 (356)
                      ++|..+       ++.+|...|+++....+|..+++.+.+.+.+..|
T Consensus       336 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G  382 (437)
T TIGR00792       336 VADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIG  382 (437)
T ss_pred             HhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            988865       4567999999999999999999998887765433

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.35  E-value=6.7e-12  Score=119.31  Aligned_cols=233  Identities=18%  Similarity=0.170  Sum_probs=169.3

Q ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHH
Q 018408           89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA  168 (356)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~  168 (356)
                      +.++++..+..++....+...+..+.+.|+++  ..+.|++.+.+-++..+...+..++.-|..|-+.+-+|.++++++.
T Consensus        99 l~~l~~~~~~q~l~~~y~~s~IttiErRF~i~--Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgs  176 (735)
T KOG3626|consen   99 LVLLSLAAFAQGLYVGYFNSVITTIERRFKIS--SSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGS  176 (735)
T ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCC--CCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHH
Confidence            45566677777777788888889999999995  4449999999999999999999999999999999999999999999


Q ss_pred             HHHHHh--------------------h--------------------------------hHHHHHHHHHHHHhhhhhhhh
Q 018408          169 IISAQA--------------------H--------------------------------SLDEMLWGRFLVGLGIGVNTV  196 (356)
Q Consensus       169 ~~~~~~--------------------~--------------------------------~~~~~~~~~~l~G~~~g~~~~  196 (356)
                      +++++-                    +                                -+..++++.++.|+|....++
T Consensus       177 ll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~t  256 (735)
T KOG3626|consen  177 LLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFT  256 (735)
T ss_pred             HHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCcc
Confidence            988751                    0                                012456679999999999999


Q ss_pred             HHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCC------------------CchhHHHHHHhHHHHHHHH
Q 018408          197 LVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDD------------------PHWWRTMLYIASLPGFILA  258 (356)
Q Consensus       197 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~------------------~~~w~~~~~~~~~~~~~~~  258 (356)
                      ...+|+-|...+++-...+|+......+|.++|.++++++...                  .|.|..-|++++.+.++..
T Consensus       257 lGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a  336 (735)
T KOG3626|consen  257 LGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSA  336 (735)
T ss_pred             CCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988865531                  1237777778888888888


Q ss_pred             HHhhcccCChHHHHhcCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCccchhhhcccCcchhhHHHH
Q 018408          259 LGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGD  331 (356)
Q Consensus       259 ~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  331 (356)
                      +.++++|....-   .++. ...+..+..+.+++..++    +....++-++...+.+.+++||.+...+++.
T Consensus       337 ~p~f~fPk~lp~---~~~~-~~~~~~~~~k~~~~~~~~----~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~  401 (735)
T KOG3626|consen  337 VPLFFFPKELPK---SQKR-KRARDLHVLKTESGGAKS----DKTFGKKIKDFPKSIKRLLSNPIFMLVVLAS  401 (735)
T ss_pred             HHHHhCcccCcc---cccc-chhhhhcccccccccccC----CcchhhhHHHHHHHHHHHhcCchHHHHHHHH
Confidence            888888866321   1110 000001111111100000    0000011122245788899999988888877

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.34  E-value=2.6e-11  Score=114.38  Aligned_cols=150  Identities=15%  Similarity=0.067  Sum_probs=105.9

Q ss_pred             HHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchh-------HHHHHhHHHHHHHHHHHHHhhhHHHHHHH
Q 018408          111 VSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCR-------RTFQIDTIPLILGAIISAQAHSLDEMLWG  183 (356)
Q Consensus       111 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr-------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  183 (356)
                      +++.+++|+  +....+.+.+++.++..++.+++|+++||+|||       ..+.+..++.+++.++....++....++.
T Consensus       277 ~~l~~~~g~--s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~  354 (476)
T PLN00028        277 EYFYDRFGL--SLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVV  354 (476)
T ss_pred             HHHHHhcCC--CHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence            344566788  566688899999999999999999999999876       22333333333444444455565555556


Q ss_pred             HHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHHHHHHHhhc
Q 018408          184 RFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQF  263 (356)
Q Consensus       184 ~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~  263 (356)
                      .++.+++.+...+....++.+..| ++||...|+.+.+..+|+.+++.+.+ . +..++|+..|++.+++.+++.++.++
T Consensus       355 ~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~-~-~~~~~y~~~f~~~~~~~~i~~~~~~~  431 (476)
T PLN00028        355 MILFSIFVQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF-T-GSSYSTETGISLMGVMIIACTLPVAF  431 (476)
T ss_pred             HHHHHHHHHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH-h-cCCccHhhHHHHHHHHHHHHHHHHHh
Confidence            666677666666666666677654 68999999998888888888887754 2 22233999999988887777776666


Q ss_pred             cc
Q 018408          264 TV  265 (356)
Q Consensus       264 ~~  265 (356)
                      ++
T Consensus       432 ~~  433 (476)
T PLN00028        432 IH  433 (476)
T ss_pred             ee
Confidence            54

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.34  E-value=6.5e-11  Score=109.15  Aligned_cols=138  Identities=13%  Similarity=0.064  Sum_probs=117.3

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHH
Q 018408          122 NPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIY  201 (356)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~  201 (356)
                      +....+.+.++..+...++.+..|++.||+|||+.+.++.++.++...+....++.+.+++..++.|++..........+
T Consensus       252 ~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~  331 (396)
T TIGR00882       252 GTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKY  331 (396)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33456788888888888899999999999999999999998888888877778888888888999999887777777778


Q ss_pred             HHhhcCCCccchhHHH-hHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHHHHHHH
Q 018408          202 ISEVAPTKYRGSLGTL-CQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALG  260 (356)
Q Consensus       202 ~~e~~p~~~r~~~~~~-~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~  260 (356)
                      ..+..+++.+++..+. ++....+|..+++.+++.+.+..| |+..|.+.++..++..+.
T Consensus       332 ~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G-~~~~f~~~~~~~~i~~~~  390 (396)
T TIGR00882       332 ITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIG-FQGAYLVLGCIVLLFTLI  390 (396)
T ss_pred             HHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcc-cHHHHHHHHHHHHHHHHH
Confidence            8888898888887776 678999999999999999999887 999999987776666544

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.34  E-value=5.1e-12  Score=109.50  Aligned_cols=129  Identities=17%  Similarity=0.181  Sum_probs=98.2

Q ss_pred             HHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccch
Q 018408          134 IAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGS  213 (356)
Q Consensus       134 ~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~  213 (356)
                      .+.-..|.++.+++.||+|||+++..++++++++.++...+.+...+.+..+..-++..+.+.+.+.|..|.+|+..|++
T Consensus       391 slaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRat  470 (528)
T KOG0253|consen  391 SLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRAT  470 (528)
T ss_pred             HHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhc
Confidence            44567899999999999999999999999999999988777655544444455555566666777789999999999999


Q ss_pred             hHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHHHHHHHhhccc
Q 018408          214 LGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTV  265 (356)
Q Consensus       214 ~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  265 (356)
                      +.|.......+|+++.|+++-..-.+   -.....+.....+++.++..++|
T Consensus       471 gvGtcSsmaRIggI~~p~iA~~~e~s---~sl~i~vy~~~~ilagIavcffP  519 (528)
T KOG0253|consen  471 GVGTCSSMARIGGIFSPVIAMRAELS---TSLPIFVYGALFILAGIAVCFFP  519 (528)
T ss_pred             chhhhhhHHhhhhhhhhHHHHHhccc---eeehHHHHHHHHHHHHHHheeee
Confidence            99999999999999999998322222   22333444555556666666777

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.33  E-value=1.1e-10  Score=110.46  Aligned_cols=155  Identities=15%  Similarity=0.117  Sum_probs=118.1

Q ss_pred             HHHHHHHhCCCCChhHHHHHHH-HHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHH---HHh-hhHHHHHHHH
Q 018408          110 IVSIAKELGFEGNPILEGLVVS-IFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIIS---AQA-HSLDEMLWGR  184 (356)
Q Consensus       110 ~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~---~~~-~~~~~~~~~~  184 (356)
                      .|++.+++|+  +..+.+++.. ...++.+++.+++|+++||+|+|+.+.++.++.+++.++.   +.. ++...+.+..
T Consensus       246 ~~~l~~~~G~--s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~  323 (491)
T PRK11010        246 TTFLIRGVGF--DAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAV  323 (491)
T ss_pred             HHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence            4555667888  5666888764 5567899999999999999999998877666555544332   232 3444455556


Q ss_pred             HHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHHHHHHHhhcc
Q 018408          185 FLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFT  264 (356)
Q Consensus       185 ~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~  264 (356)
                      ++..++.|...+...++..+..+++.+++..++.+....+|..+++.++|.+.+..| |+..|.+.++..+++.+...++
T Consensus       324 ~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G-~~~~f~~~~~~~l~~l~~~~~~  402 (491)
T PRK11010        324 FFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHG-WPTFYLFSVAAAVPGLLLLLVC  402 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666667778888999999999999999999999999999999999998887 9999998888888877666555


Q ss_pred             cCC
Q 018408          265 VES  267 (356)
Q Consensus       265 ~e~  267 (356)
                      +++
T Consensus       403 ~~~  405 (491)
T PRK11010        403 RQT  405 (491)
T ss_pred             Hhc
Confidence            543

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.33  E-value=3.8e-11  Score=106.53  Aligned_cols=175  Identities=15%  Similarity=0.105  Sum_probs=144.4

Q ss_pred             HHHHHHHHHHHHhhhhcchhhHHHH-HHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHH
Q 018408           89 VLIASMSNFLFGYHIGVMNGPIVSI-AKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILG  167 (356)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~  167 (356)
                      .++++-..+.++.+.  .......+ ..++|+  ++.+...+.....+..++|++++|++.||+|.|+++.++.++..+.
T Consensus       256 ~FLiA~~~~~DGv~t--il~~~~~fg~~~~gl--s~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~  331 (438)
T COG2270         256 LFLIARFFYIDGVNT--ILAMGGVFGAADLGL--SSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIA  331 (438)
T ss_pred             HHHHHHHHHHhhHHH--HHHHHHHHHHHHcCc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHH
Confidence            344444444454432  22222233 458899  6777888899999999999999999999999999999999999998


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHH
Q 018408          168 AIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTML  247 (356)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~  247 (356)
                      ++...+...-..+.++-++.|.+.|+.++..-+|..++.|+++-+..+|++++....+..++|.+.+.+.+..++-|..+
T Consensus       332 ~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~  411 (438)
T COG2270         332 ALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGV  411 (438)
T ss_pred             HHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHH
Confidence            88888888878888889999999999999999999999999999999999999999999999999999988887778777


Q ss_pred             HHhHHHHHHHHHHhhcccCC
Q 018408          248 YIASLPGFILALGMQFTVES  267 (356)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~e~  267 (356)
                      ...+++.++.++....+|+.
T Consensus       412 ~~i~vll~iGl~~L~~v~~~  431 (438)
T COG2270         412 LSIIVLLLIGLLLLLRVKVP  431 (438)
T ss_pred             HHHHHHHHhhHhhEEeecCC
Confidence            77777777777777777654

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.33  E-value=2.4e-11  Score=110.12  Aligned_cols=174  Identities=18%  Similarity=0.224  Sum_probs=136.2

Q ss_pred             HHHHHHHHHHHHhhhhcchhhH-HHHHHHhC----CCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhh-chhHHHHHhHH
Q 018408           89 VLIASMSNFLFGYHIGVMNGPI-VSIAKELG----FEGNPILEGLVVSIFIAGAFVGSISSGSLADKL-GCRRTFQIDTI  162 (356)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~  162 (356)
                      ++.+...-+..-+.++.+...+ -++..+++    +  +++++.-+.+.|..---+..+++||++||+ |+|++++.|.+
T Consensus        23 l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~--~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGai  100 (498)
T COG3104          23 LYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGF--DETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAI  100 (498)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCc--ChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence            3444444455555554444433 35555555    7  444455556666555556788999999996 99999999999


Q ss_pred             HHHHHHHHHHHhh--hHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCC--ccchhHHHhHHHHHHHHHHHHHhhhccCC
Q 018408          163 PLILGAIISAQAH--SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTK--YRGSLGTLCQVGTCLGIITSLFLGIPAED  238 (356)
Q Consensus       163 ~~~i~~~~~~~~~--~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~--~r~~~~~~~~~~~~~g~~~~~~i~~~l~~  238 (356)
                      +.+++.++.+...  +...++++..++++|.|..=+....++.|.+|++  +|-.+++++.++.++|++++|++.+++.+
T Consensus       101 l~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~  180 (498)
T COG3104         101 LMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAI  180 (498)
T ss_pred             HHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHH
Confidence            9999999999884  7888999999999999999999999999999863  36678888999999999999999999999


Q ss_pred             CCchhHHHHHHhHHHHHHHHHHhhccc
Q 018408          239 DPHWWRTMLYIASLPGFILALGMQFTV  265 (356)
Q Consensus       239 ~~~~w~~~~~~~~~~~~~~~~~~~~~~  265 (356)
                      ..+ |...|..+++-..++++...+.+
T Consensus       181 ~~g-~~~gF~~aavGm~~gl~~f~~~~  206 (498)
T COG3104         181 NYG-WHVGFGLAAVGMIIGLVIFLLGR  206 (498)
T ss_pred             hhC-HHHHHHHHHHHHHHHHHHHHHcc
Confidence            988 99999998888777776655543

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.32  E-value=5e-11  Score=109.04  Aligned_cols=183  Identities=19%  Similarity=0.254  Sum_probs=137.7

Q ss_pred             hHHHHHHHHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhch-hHHHHHhHHH
Q 018408           85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGC-RRTFQIDTIP  163 (356)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr-r~~~~~~~~~  163 (356)
                      +|+.++++.+..++.+...+++.+..-.+.++++.+.+....|++.++..+|.+++++++|+...|.|. |+.++.|.++
T Consensus        32 ~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii  111 (488)
T KOG2325|consen   32 NWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLI  111 (488)
T ss_pred             chHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHH
Confidence            466677777778888887777766654455565555567779999999999999999999999999987 8888999999


Q ss_pred             HHHHHHHH-HHh---h-hHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCC
Q 018408          164 LILGAIIS-AQA---H-SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAED  238 (356)
Q Consensus       164 ~~i~~~~~-~~~---~-~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~  238 (356)
                      .++++++. ++.   + ..+.++++|++.|+|.|.. +..-.|+++....+.|.++++....+..+|..+||.+...+..
T Consensus       112 ~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~  190 (488)
T KOG2325|consen  112 AIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNF-AVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTP  190 (488)
T ss_pred             HHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccH-HHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhh
Confidence            99999887 332   2 5678889999999998765 7788899998888899999998888777777777776554432


Q ss_pred             CC--c----------hhHHHHHHhHHHHHHHHHH-hhcccCCh
Q 018408          239 DP--H----------WWRTMLYIASLPGFILALG-MQFTVESP  268 (356)
Q Consensus       239 ~~--~----------~w~~~~~~~~~~~~~~~~~-~~~~~e~p  268 (356)
                      -.  |          -+...-|+.+++.++.++. .+++.|.+
T Consensus       191 Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~  233 (488)
T KOG2325|consen  191 LGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVY  233 (488)
T ss_pred             hcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecc
Confidence            11  1          1445566666666666544 45566664

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.32  E-value=9.3e-11  Score=104.87  Aligned_cols=156  Identities=19%  Similarity=0.165  Sum_probs=127.5

Q ss_pred             hhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhh-hHHHHH
Q 018408          103 IGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAH-SLDEML  181 (356)
Q Consensus       103 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~-~~~~~~  181 (356)
                      +..+.+.-|.+.+..|+  +....+++...+.++..+|.+++|+++|| +.|+.+.....+.++..+...+.. +.+..+
T Consensus       228 F~~ftYi~P~L~~v~g~--s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~  304 (394)
T COG2814         228 FALYTYIRPFLESVAGF--SVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALAL  304 (394)
T ss_pred             hhhHHhHHHHHHHccCC--CHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence            34555666888888899  55569999999999999999999999999 999999888888888877766654 455556


Q ss_pred             HHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHHHHHHHh
Q 018408          182 WGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGM  261 (356)
Q Consensus       182 ~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~  261 (356)
                      +.-++.|+..+........-+++ .-++.+..+.+++...+++|..+|..+++.+.++.| +....+++++..+++.++.
T Consensus       305 ~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g-~~~~~~~~a~l~~~a~~~~  382 (394)
T COG2814         305 ALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALG-YAATGWVGAALLLLALLLA  382 (394)
T ss_pred             HHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHHHHHH
Confidence            66677788777666666666666 335779999999999999999999999999999977 9999999999888887665


Q ss_pred             hc
Q 018408          262 QF  263 (356)
Q Consensus       262 ~~  263 (356)
                      ++
T Consensus       383 ~~  384 (394)
T COG2814         383 LL  384 (394)
T ss_pred             HH
Confidence            54

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=99.31  E-value=1.9e-10  Score=97.32  Aligned_cols=160  Identities=17%  Similarity=0.096  Sum_probs=120.8

Q ss_pred             hhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHh-------h
Q 018408          103 IGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQA-------H  175 (356)
Q Consensus       103 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-------~  175 (356)
                      .+.++.+.|.+++.+|+  ++.+...+.+.-.+|..+| ++.|.+.|++|.+.++.+|.++..++..+...+       .
T Consensus        18 ~Y~Fs~yS~~Lk~~l~~--sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~   94 (250)
T PF06813_consen   18 TYTFSAYSPQLKSRLGY--SQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSL   94 (250)
T ss_pred             ccchhhhhHHHHHHhCC--CHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCcc
Confidence            34556667899999999  7777889999999998875 888999999999999999999999999877653       3


Q ss_pred             hHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHH
Q 018408          176 SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGF  255 (356)
Q Consensus       176 ~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~  255 (356)
                      +++.+.+..++.|.+.+...+.......+.|| ++||++.|+.-....+++.+-..+...+..... -...+..+..+.+
T Consensus        95 ~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~-~~fll~la~~~~~  172 (250)
T PF06813_consen   95 PVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDP-SSFLLFLAVLPAV  172 (250)
T ss_pred             chHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCCh-HHHHHHHHHHHHH
Confidence            56677777777777777776777777778898 579999999988888877776666555554433 3444445555555


Q ss_pred             HHHHHhhcccCC
Q 018408          256 ILALGMQFTVES  267 (356)
Q Consensus       256 ~~~~~~~~~~e~  267 (356)
                      +.++..++++..
T Consensus       173 v~l~~~~~vr~~  184 (250)
T PF06813_consen  173 VCLVAMFFVRPV  184 (250)
T ss_pred             HHHHHhhheecc
Confidence            555555555443

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.30  E-value=4.9e-11  Score=112.03  Aligned_cols=176  Identities=19%  Similarity=0.171  Sum_probs=152.3

Q ss_pred             HHHHHHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhc--hhHHHHHhHHHHH
Q 018408           88 HVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLG--CRRTFQIDTIPLI  165 (356)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G--rr~~~~~~~~~~~  165 (356)
                      .++...+..........+....+|.+.++.|+  ++.+.+.+.++..+...++.++.|+++|+..  ++.+..++.+..+
T Consensus       299 ~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~--~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~g  376 (509)
T KOG2504|consen  299 KFLLLALSNLFAYLGFNVPFVYLPSYAKSLGL--SSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAG  376 (509)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--ChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHH
Confidence            34555555555555666667778888889898  5566899999999999999999999999987  5566677888888


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHH
Q 018408          166 LGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRT  245 (356)
Q Consensus       166 i~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~  245 (356)
                      ++.+.++++++++.++..-.+.|+..|...+.....+.|+.+.++-..+.|+..++..++..++|++++.+.+..++|..
T Consensus       377 l~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~  456 (509)
T KOG2504|consen  377 LARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDH  456 (509)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeee
Confidence            88888999999999999999999999999998888999999999999999999999999999999999999998888999


Q ss_pred             HHHHhHHHHHHHHHHhhccc
Q 018408          246 MLYIASLPGFILALGMQFTV  265 (356)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~  265 (356)
                      .|+.+++..++..+.+++.+
T Consensus       457 ~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  457 AFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             ehhhcChHHHHHHHHHHHhH
Confidence            99999988888887777665

>TIGR00788 fbt folate/biopterin transporter

Probab=99.29  E-value=1e-10  Score=109.96  Aligned_cols=174  Identities=17%  Similarity=0.082  Sum_probs=126.6

Q ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhc-----hhHHHHHhHHH
Q 018408           89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLG-----CRRTFQIDTIP  163 (356)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G-----rr~~~~~~~~~  163 (356)
                      ..++...++..|..........+.+.+++|+  +..+.+.+.+...+.+.+-.+ +|+++||++     ||+.++++.++
T Consensus        28 ~~~~~~~y~~qGl~~l~~~~~~~~l~~~lg~--s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l  104 (468)
T TIGR00788        28 LAIGLQVLFVKGIAGLMRLPLSPMLTDDLGL--DGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLL  104 (468)
T ss_pred             HHHHHHHHHHhhHHHHhhhhhhHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHH
Confidence            3445555677777733344455677778999  666788888888888888555 999999997     77777777766


Q ss_pred             HH-HHHHHHHHhhhHHHHH-HHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHh---HHHHHHHHHHHHHhhhccCC
Q 018408          164 LI-LGAIISAQAHSLDEML-WGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLC---QVGTCLGIITSLFLGIPAED  238 (356)
Q Consensus       164 ~~-i~~~~~~~~~~~~~~~-~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~---~~~~~~g~~~~~~i~~~l~~  238 (356)
                      .. ++....+..++..... +..++.+++.+......-.+..|..+ +++....+..   .....+|..+++.+++.+.+
T Consensus       105 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~  183 (468)
T TIGR00788       105 GSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLD  183 (468)
T ss_pred             HHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence            53 4333333334544444 47889999999999999999999998 5555444333   33345899999999999888


Q ss_pred             CCchhHHHHHHhHHHHHHHHHHhhcccCC
Q 018408          239 DPHWWRTMLYIASLPGFILALGMQFTVES  267 (356)
Q Consensus       239 ~~~~w~~~~~~~~~~~~~~~~~~~~~~e~  267 (356)
                      ..+ |+..|++.+++.++..+..++++|+
T Consensus       184 ~~~-~~~~f~~~a~l~ll~~~~~~~~~E~  211 (468)
T TIGR00788       184 KTL-TRILFLITAALLLLQLFVSNLSKER  211 (468)
T ss_pred             hcC-cchHHHHHHHHHHHHHHHHHhcccc
Confidence            877 9999999887777776666778886

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR01272 gluP glucose/galactose transporter

Probab=99.29  E-value=3.2e-10  Score=100.74  Aligned_cols=160  Identities=13%  Similarity=0.098  Sum_probs=116.5

Q ss_pred             HHHHHHHHHHHHHHhhhhcchhhHHHHHHH---hCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHH
Q 018408           87 PHVLIASMSNFLFGYHIGVMNGPIVSIAKE---LGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIP  163 (356)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~  163 (356)
                      +.++...++.+.+.......+.+.+.+.++   +|+  +..+.+...+.+..++.+|.++.+++.||+|+|+.+.++.++
T Consensus       140 ~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~--s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l  217 (310)
T TIGR01272       140 THLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGL--PEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFL  217 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            334444444444443344445555555543   466  566789999999999999999999999999999998888888


Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchh
Q 018408          164 LILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWW  243 (356)
Q Consensus       164 ~~i~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w  243 (356)
                      .+++.++....++... ..+-++.|++.+..+|...+...+.+|++ .+++.++. ....+|+++.|.+.|.+.|..+ .
T Consensus       218 ~~~~~~l~~~~~~~~~-~~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g-~  293 (310)
T TIGR01272       218 AVLLSIGAALTHGYVA-MWFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLG-I  293 (310)
T ss_pred             HHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhcc-c
Confidence            8777766655554333 34566889999999999998888888754 45666665 4566899999999999988777 7


Q ss_pred             HHHHHHhHH
Q 018408          244 RTMLYIASL  252 (356)
Q Consensus       244 ~~~~~~~~~  252 (356)
                      +..+++..+
T Consensus       294 ~~a~~v~~~  302 (310)
T TIGR01272       294 QLAFALPVP  302 (310)
T ss_pred             hHHHHHHHH
Confidence            777764433

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.29  E-value=8.1e-10  Score=98.76  Aligned_cols=159  Identities=15%  Similarity=0.077  Sum_probs=130.2

Q ss_pred             CCCCchhHHHHHHHHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHH
Q 018408           79 DLGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQ  158 (356)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~  158 (356)
                      .+-+.+||..++..++..+..++....+.+...+....||   +.....|...+|.+.++...+++.|+.|++|-|....
T Consensus        37 ~rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg---s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~l  113 (480)
T KOG2563|consen   37 HRVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG---SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALL  113 (480)
T ss_pred             cccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc---chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHH
Confidence            3456678888888888888888877777777788888888   3334779999999999999999999999999999999


Q ss_pred             HhHHHHHHHHHHHHHhh------hHH--HHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHH
Q 018408          159 IDTIPLILGAIISAQAH------SLD--EMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSL  230 (356)
Q Consensus       159 ~~~~~~~i~~~~~~~~~------~~~--~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~  230 (356)
                      ++..+.+++..+-..+.      .++  ....+..+.+.++-.....-.-...-|||+++|+.+..+-.++..+|.+++.
T Consensus       114 lgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~  193 (480)
T KOG2563|consen  114 LGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGF  193 (480)
T ss_pred             HHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHh
Confidence            99999999999876652      233  5566777777777666666567778899999999999999889899999998


Q ss_pred             HhhhccCCCC
Q 018408          231 FLGIPAEDDP  240 (356)
Q Consensus       231 ~i~~~l~~~~  240 (356)
                      ++...+..+.
T Consensus       194 llppilV~~~  203 (480)
T KOG2563|consen  194 LLPPILVPSS  203 (480)
T ss_pred             hccceecCCC
Confidence            8888877654

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.28  E-value=8.5e-11  Score=109.84  Aligned_cols=158  Identities=11%  Similarity=0.034  Sum_probs=102.2

Q ss_pred             hhhHHHHH-HHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHH---HHHHHHHHh--hhHHHH
Q 018408          107 NGPIVSIA-KELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLI---LGAIISAQA--HSLDEM  180 (356)
Q Consensus       107 ~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~---i~~~~~~~~--~~~~~~  180 (356)
                      ....|.+. +..|+  +..+.++....+.++..++.+++|+++||+|+++....+..+..   ++.+.....  .+....
T Consensus       271 ~~~~p~~l~~~~g~--s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (438)
T TIGR00712       271 LDWSPTYLKEVKHF--ALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVD  348 (438)
T ss_pred             HHhHHHHHHHccCC--ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHH
Confidence            34455554 44677  55568888888999999999999999999965432222322221   111221121  233333


Q ss_pred             HHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHH-HHHHHHhhhccCCCCchhHHHHHHhHHHHHHHHH
Q 018408          181 LWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLG-IITSLFLGIPAEDDPHWWRTMLYIASLPGFILAL  259 (356)
Q Consensus       181 ~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g-~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~  259 (356)
                      .+..++.|++..+..........|.+|++.||+++|+.+....+| .+++|.+.+.+.++.| |...+++.++..+++.+
T Consensus       349 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g-~~~~~~~~~~~~~~~~~  427 (438)
T TIGR00712       349 MICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVI  427 (438)
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhcc-chHHHHHHHHHHHHHHH
Confidence            334455555433332333346789999999999999998877776 4689999999999887 99998887666555544


Q ss_pred             -HhhcccCC
Q 018408          260 -GMQFTVES  267 (356)
Q Consensus       260 -~~~~~~e~  267 (356)
                       .++++||.
T Consensus       428 ~~~~~~~~~  436 (438)
T TIGR00712       428 LLIVVMIGE  436 (438)
T ss_pred             HHHHHHhhc
Confidence             44456665

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.27  E-value=1e-10  Score=110.16  Aligned_cols=174  Identities=16%  Similarity=0.052  Sum_probs=113.5

Q ss_pred             HHHHHHHHHHHHhhhhcchhhHHHH-HHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHH--------HH
Q 018408           89 VLIASMSNFLFGYHIGVMNGPIVSI-AKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTF--------QI  159 (356)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~--------~~  159 (356)
                      ++...+..+...+....+..++|.+ .+.+|.  +..+.+++.++..++..++.++.|+++||+++|+..        ..
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~--s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~  340 (465)
T TIGR00894       263 VWAIWFAIFGHFWLYTILPTYLPTFISWVLRV--SGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFN  340 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--ChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence            4445555555555555555566655 556788  556688999999999999999999999998755321        11


Q ss_pred             hHHHH--HHHHHHHHH-hhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhcc
Q 018408          160 DTIPL--ILGAIISAQ-AHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPA  236 (356)
Q Consensus       160 ~~~~~--~i~~~~~~~-~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l  236 (356)
                      +..+.  ++..++... ..+....+++.++.+.+.+...+.......|..|. .+|..+++.++...+|+.++|.+.+.+
T Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~  419 (465)
T TIGR00894       341 GIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNI  419 (465)
T ss_pred             HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence            11111  111111222 22333344444555555555555555555677765 799999999999999999999999988


Q ss_pred             CCCC--chhHHHHHHhHHHHHHHHHHhhccc
Q 018408          237 EDDP--HWWRTMLYIASLPGFILALGMQFTV  265 (356)
Q Consensus       237 ~~~~--~~w~~~~~~~~~~~~~~~~~~~~~~  265 (356)
                      .+..  +.|...|++.++..++..+...+++
T Consensus       420 ~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~  450 (465)
T TIGR00894       420 LSQDSKNVWLIVFLIMAFVNILCVIFYLIFG  450 (465)
T ss_pred             eCCCCchHHHHHHHHHHHHHHHHHHHeeeee
Confidence            7654  4488899888877777766555543

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.27  E-value=4.2e-11  Score=109.22  Aligned_cols=152  Identities=20%  Similarity=0.152  Sum_probs=103.8

Q ss_pred             HHHHHHHHHhhhhcchhhHHH-HHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhch-hHHHH-HhH-HHHHHH
Q 018408           92 ASMSNFLFGYHIGVMNGPIVS-IAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGC-RRTFQ-IDT-IPLILG  167 (356)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr-r~~~~-~~~-~~~~i~  167 (356)
                      +.+..+.............|. +.+.+|.  +..+.+++.+.+.++..++.++.|+++||.++ |+... ... .+..++
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~  298 (379)
T TIGR00881       221 ISLGYVFVYVVRTGILDWSPLYLTQEKGF--SKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVS  298 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHH
Confidence            333333333333333444444 4566787  55668889999999999999999999998643 33222 221 112222


Q ss_pred             HHHHHH--hhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHH
Q 018408          168 AIISAQ--AHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRT  245 (356)
Q Consensus       168 ~~~~~~--~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~  245 (356)
                      ......  ..+...+++..++.|+...+..+....+..|.+|+++|+++.++.+....+|..++|.+.+.+.++.| |++
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~  377 (379)
T TIGR00881       299 LLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFG-WAG  377 (379)
T ss_pred             HHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhc-ccc
Confidence            222222  23445555666777776666666677789999999999999999999999999999999999999877 876


Q ss_pred             H
Q 018408          246 M  246 (356)
Q Consensus       246 ~  246 (356)
                      .
T Consensus       378 ~  378 (379)
T TIGR00881       378 A  378 (379)
T ss_pred             c
Confidence            4

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.27  E-value=3.3e-10  Score=104.21  Aligned_cols=148  Identities=14%  Similarity=-0.000  Sum_probs=108.8

Q ss_pred             hHHHHHHHhCCCCChhHHHHHHHHHH-HHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHH------hhhHHHHH
Q 018408          109 PIVSIAKELGFEGNPILEGLVVSIFI-AGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQ------AHSLDEML  181 (356)
Q Consensus       109 ~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~------~~~~~~~~  181 (356)
                      ..+.+.++.|+  +..+.+++..... .+..++.++.|++.||+|+|+.+..+..+.++..+....      .++...++
T Consensus       230 ~~~~~l~~~G~--s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (390)
T TIGR02718       230 LSKLYLVDAGW--PLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAW  307 (390)
T ss_pred             HhhHHHHhcCC--CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHH
Confidence            34445566788  5666888777765 466778899999999999999988877665333322221      12233334


Q ss_pred             HHHHHHHhhhhhhhhHHHHHHHhhcCC-CccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHHHHHH
Q 018408          182 WGRFLVGLGIGVNTVLVPIYISEVAPT-KYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILAL  259 (356)
Q Consensus       182 ~~~~l~G~~~g~~~~~~~~~~~e~~p~-~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~  259 (356)
                      ....+.+++.+...+.....+.+..++ +.+++.+++.+....+|..++|.+++.+.+..| ++..|++.+++.++..+
T Consensus       308 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G-~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       308 SCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFG-YAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHHHHH
Confidence            445556677777777777787777776 889999999999999999999999999998877 88888887776666544

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.25  E-value=5.8e-10  Score=101.51  Aligned_cols=168  Identities=10%  Similarity=-0.017  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhch---hHHHHH-hHHHHH
Q 018408           90 LIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGC---RRTFQI-DTIPLI  165 (356)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr---r~~~~~-~~~~~~  165 (356)
                      +.+.+..+........+..++|.+.++.|++  .. .+...++..++..++   .++++||..|   |+.... ..++.+
T Consensus       195 ~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s--~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a  268 (368)
T TIGR00903       195 WIIGAILGFGVALFDNLAIWLEAALRPAGLE--DI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIA  268 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--hH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHH
Confidence            3443444444444445556778777877874  32 444444444444444   5778887754   333332 334444


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHH
Q 018408          166 LGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRT  245 (356)
Q Consensus       166 i~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~  245 (356)
                      +.....+...+....++.-++.|++....++..+.+.+|.+|++.||+++|+.+....+|+.++|.+.+.+..  + ...
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~-~~~  345 (368)
T TIGR00903       269 AFFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--S-AEA  345 (368)
T ss_pred             HHHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--C-HHH
Confidence            4444444444444445556667777777778888899999999999999999999999999999988876663  4 667


Q ss_pred             HHHHhHHHHHHHHHHhhcccC
Q 018408          246 MLYIASLPGFILALGMQFTVE  266 (356)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~e  266 (356)
                      .|.+.+++.+++.+...++++
T Consensus       346 ~f~~~~~~~~i~~~~~~~~~~  366 (368)
T TIGR00903       346 YFTFLAILITIAFAIALLLPN  366 (368)
T ss_pred             HHHHHHHHHHHHHHHHHhCCC
Confidence            777777777766655544454

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00896 CynX cyanate transporter

Probab=99.25  E-value=2.3e-10  Score=103.89  Aligned_cols=136  Identities=15%  Similarity=0.083  Sum_probs=104.9

Q ss_pred             chhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhh-chhHHHHHhHHHHHHHHHHHHHhhhHHHHHHHH
Q 018408          106 MNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKL-GCRRTFQIDTIPLILGAIISAQAHSLDEMLWGR  184 (356)
Q Consensus       106 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  184 (356)
                      ....+|.+.++.|.  +..+.+.+.+.+.++.+++.++.|+++||+ +||+.+.++.++.+++.++..+.++..... ..
T Consensus       216 ~~~~lp~~~~~~g~--~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  292 (355)
T TIGR00896       216 LIGWLPAILISHGA--SAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WA  292 (355)
T ss_pred             HHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HH
Confidence            34556767777787  556688999999999999999999999999 566677777777777776666655433222 45


Q ss_pred             HHHHhhhhhhhhHHHHHHHhhcC-CCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhH
Q 018408          185 FLVGLGIGVNTVLVPIYISEVAP-TKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWR  244 (356)
Q Consensus       185 ~l~G~~~g~~~~~~~~~~~e~~p-~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~  244 (356)
                      ++.|++.+...+.....+.+..+ +++++...++.+....+|..++|.+.+.+.++.++|.
T Consensus       293 ~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~~~  353 (355)
T TIGR00896       293 LVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGNWL  353 (355)
T ss_pred             HHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            67899998888887777765554 5667888999888889999999999999988776553

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.23  E-value=9.8e-10  Score=100.81  Aligned_cols=150  Identities=14%  Similarity=0.112  Sum_probs=107.2

Q ss_pred             HHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHH-hhhHHHHHHHHHHHH
Q 018408          110 IVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQ-AHSLDEMLWGRFLVG  188 (356)
Q Consensus       110 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~l~G  188 (356)
                      .|++.+.+|.  +..+.+++.+...++..++.++.|++.||+|+|+.+..+..+.+++.++... .++.+..++..++.+
T Consensus       223 ~~~~~~~~g~--s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  300 (382)
T PRK10091        223 KPYMMFISGF--SETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICC  300 (382)
T ss_pred             HHHHHHhcCC--CHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            4566666788  5566889999999999999999999999999999999888887777765543 445555555666666


Q ss_pred             hhhhhhhhHHHH-HHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHHHHHHHhhc
Q 018408          189 LGIGVNTVLVPI-YISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQF  263 (356)
Q Consensus       189 ~~~g~~~~~~~~-~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~  263 (356)
                      ++.++..+.... ...+..+.+.++..  ..+....+|..++|.+++.+.+..++|++.+.+.++..++.+....+
T Consensus       301 ~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (382)
T PRK10091        301 AGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLL  374 (382)
T ss_pred             HHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHH
Confidence            665544443333 33444444444443  34677889999999999999886545999999887766665544433

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.22  E-value=2.1e-09  Score=99.01  Aligned_cols=145  Identities=14%  Similarity=0.017  Sum_probs=110.6

Q ss_pred             HHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 018408          110 IVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGL  189 (356)
Q Consensus       110 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~G~  189 (356)
                      .|.+.+++|+  +....+.+...+.++..++.++.+++.||.+++..+....+...+..++....++.+.+.+..++.|+
T Consensus       240 ~p~~~~~~g~--s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~  317 (394)
T PRK10213        240 RPVYMNLAGF--GVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGL  317 (394)
T ss_pred             HHHHHHhcCC--ChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            4777778888  45558888888999999999999999999654443443333334434444455667777778889999


Q ss_pred             hhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHHHHH
Q 018408          190 GIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILA  258 (356)
Q Consensus       190 ~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~  258 (356)
                      +.+...+....++.+..| +++++..++......+|..+|+.+++.+.+..| ++..++.+++..++..
T Consensus       318 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g-~~~~~~~~~~~~~~~~  384 (394)
T PRK10213        318 TFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIG-LTSPLMLSGTLMLLTA  384 (394)
T ss_pred             HHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hhhHHHHHHHHHHHHH
Confidence            999888888888998887 456777888888889999999999999999877 8887777766554443

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.22  E-value=4.8e-10  Score=117.16  Aligned_cols=143  Identities=20%  Similarity=0.174  Sum_probs=116.8

Q ss_pred             HHHHHHhCCCCChh-HHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 018408          111 VSIAKELGFEGNPI-LEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGL  189 (356)
Q Consensus       111 ~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~G~  189 (356)
                      +++.+.+|+  +.. ..+++.+...++.+++.++.|+++||+++++.+.++.++.+++.++..+..+.+.++++.++.|+
T Consensus       257 ~~~~~~~g~--s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  334 (1146)
T PRK08633        257 AYAKEVLGL--DNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGF  334 (1146)
T ss_pred             HHHHHHhCC--CcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            355667888  444 68899999999999999999999999999999988888888888888888888888888999999


Q ss_pred             hhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHH
Q 018408          190 GIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGF  255 (356)
Q Consensus       190 ~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~  255 (356)
                      +.++..+...+++.+.+|++.||+++++.++...+|.++++.+++.+.....++...+++.+.+.+
T Consensus       335 ~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  400 (1146)
T PRK08633        335 SAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTL  400 (1146)
T ss_pred             HHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            999988889999999999999999999999999999888877776654321125555555444433

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.22  E-value=2.6e-09  Score=97.88  Aligned_cols=171  Identities=17%  Similarity=0.157  Sum_probs=116.9

Q ss_pred             HHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhc-hhHHHHHhHHHHHHHHHHHH
Q 018408           94 MSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLG-CRRTFQIDTIPLILGAIISA  172 (356)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G-rr~~~~~~~~~~~i~~~~~~  172 (356)
                      ..++...+..+.+.+..+.+.++.|+  +..++|.+.+...+..+++++++|.++||.+ +|+.+.+..++.++......
T Consensus         9 ~~~f~~f~~~G~~~p~~~~~L~~~G~--s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~   86 (400)
T PF03825_consen    9 LMYFLYFFAYGAFLPYLPLYLESRGF--SGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLA   86 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            33444445555666777888888998  7788999999999999999999999999985 57777777777777777777


Q ss_pred             HhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHh-hhccCCCC--chhHHHHHH
Q 018408          173 QAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFL-GIPAEDDP--HWWRTMLYI  249 (356)
Q Consensus       173 ~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i-~~~l~~~~--~~w~~~~~~  249 (356)
                      ..++++.+++..++..+......+...++..+...  +++.-.|-.-.++++|-+++... ...+....  ++....+++
T Consensus        87 ~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i  164 (400)
T PF03825_consen   87 FSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYI  164 (400)
T ss_pred             HhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHH
Confidence            78888888888888888887777888877777765  33444455555555555555332 11111111  113345566


Q ss_pred             hHHHHHHHHHHhhcccCCh
Q 018408          250 ASLPGFILALGMQFTVESP  268 (356)
Q Consensus       250 ~~~~~~~~~~~~~~~~e~p  268 (356)
                      .++..++.....+.+|++|
T Consensus       165 ~~~~~~ll~~~~l~lp~~~  183 (400)
T PF03825_consen  165 AAILSLLLAGFALFLPKTP  183 (400)
T ss_pred             HHHHHHHHHHHHHhCCCCc
Confidence            6655555555556678765

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.21  E-value=2.3e-09  Score=99.21  Aligned_cols=144  Identities=14%  Similarity=0.123  Sum_probs=108.7

Q ss_pred             HHH-HHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHh-----hhHHHHHHH
Q 018408          110 IVS-IAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQA-----HSLDEMLWG  183 (356)
Q Consensus       110 ~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~  183 (356)
                      .|. +.+++|+  ++.+.++......++..++.++.|+++||+|+|+.+.++.++.+++.++..+.     .+...+++.
T Consensus       238 ~p~~~~~~~g~--~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  315 (406)
T PRK15402        238 SPVILISGEQL--SSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAG  315 (406)
T ss_pred             hHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHH
Confidence            344 4566787  56667777777778889999999999999999999998888777777666543     245566777


Q ss_pred             HHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHHHH
Q 018408          184 RFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFIL  257 (356)
Q Consensus       184 ~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~  257 (356)
                      .++.|++.+...+........ .++++||+..+++++...+|..+++.+.+.+.+..+ +....+..++..++.
T Consensus       316 ~~~~g~g~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~-~~~~~~~~~~~~~~~  387 (406)
T PRK15402        316 LSLYAFGIGLANAGLYRLTLF-SSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGG-NGLFNLFNLANGLLW  387 (406)
T ss_pred             HHHHHHHHHHHhhhHHHHHhh-hccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCc-hHHHHHHHHHHHHHH
Confidence            888999888877666655443 345889999999999999999999999999988877 444444444444433

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.21  E-value=4.2e-10  Score=94.49  Aligned_cols=155  Identities=15%  Similarity=0.121  Sum_probs=114.5

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHH
Q 018408           84 PAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIP  163 (356)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~  163 (356)
                      ...+.+.++++.+....+-+...++  ..+++.+|+  ++..++.+.+.......+.+++.|.++||+|++...+.+..+
T Consensus       264 ppfw~~~iicv~yyva~fPFi~lg~--~fF~~rfGl--S~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~  339 (459)
T KOG4686|consen  264 PPFWVLVIICVLYYVAWFPFITLGP--MFFQKRFGL--SAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACI  339 (459)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhhhhH--HHHHHhhCC--ChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHH
Confidence            3345555666655544443333332  357888999  555577788887777888899999999999999888876554


Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchh
Q 018408          164 LILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWW  243 (356)
Q Consensus       164 ~~i~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w  243 (356)
                      ..+..-.. +.-+.+.=++...+.|+.........+..++-+.|.++-|++.|..+...++|-.+.|++++.+.++.|++
T Consensus       340 ~tl~~H~~-l~Ft~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y  418 (459)
T KOG4686|consen  340 LTLLGHSG-LFFTFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSY  418 (459)
T ss_pred             HHHHHhhh-HHhhhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCch
Confidence            44433221 12233333556778899888888888889999999999999999999999999999999999999987753

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.21  E-value=5.7e-10  Score=102.97  Aligned_cols=151  Identities=12%  Similarity=0.043  Sum_probs=111.9

Q ss_pred             hhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhh-hhchhHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 018408          108 GPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLAD-KLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFL  186 (356)
Q Consensus       108 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-r~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l  186 (356)
                      ...|.+.++.+.  ++...+++.+...++...+..+.+++.| |++.++.+..+.++.+++.++.+..++++.+++..++
T Consensus       229 ~~~p~~~~~~~~--~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l  306 (400)
T PRK11646        229 LMLPIMVNDIAG--SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICL  306 (400)
T ss_pred             HhhhhhHHhhcC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            345666666554  3445777777776666655555566655 5676777777888888888777778888777777788


Q ss_pred             HHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCch---hHHHHHHhHHHHHHHHHH
Q 018408          187 VGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHW---WRTMLYIASLPGFILALG  260 (356)
Q Consensus       187 ~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~---w~~~~~~~~~~~~~~~~~  260 (356)
                      .+++.+...+....++.+..|+++||+.+|+++....+|..++|.+++.+.++.++   ....+++.++..++..+.
T Consensus       307 ~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (400)
T PRK11646        307 FYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLA  383 (400)
T ss_pred             HHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence            88888888888889999999999999999999999999999999999999876421   234555555555555444

>PRK09848 glucuronide transporter; Provisional

Probab=99.20  E-value=3.8e-10  Score=105.80  Aligned_cols=128  Identities=14%  Similarity=0.078  Sum_probs=96.8

Q ss_pred             hHHHHH-HHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhh--hHHHHHHHHH
Q 018408          109 PIVSIA-KELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAH--SLDEMLWGRF  185 (356)
Q Consensus       109 ~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~  185 (356)
                      ..|++. +.+|.  +....++......++..++.++.+++.||+|+|+.+.++.++.+++.++..+.+  +.+.+++..+
T Consensus       250 ~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~  327 (448)
T PRK09848        250 SSLFYVRYVLND--TGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALA  327 (448)
T ss_pred             hheeeEeeecCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHH
Confidence            344333 34554  343344444444567788999999999999999999999988888877776643  5666667788


Q ss_pred             HHHhhhhhhhhHHHHHHHhhcCCC-------ccchhHHHhHHHHHHHHHHHHHhhhccCC
Q 018408          186 LVGLGIGVNTVLVPIYISEVAPTK-------YRGSLGTLCQVGTCLGIITSLFLGIPAED  238 (356)
Q Consensus       186 l~G~~~g~~~~~~~~~~~e~~p~~-------~r~~~~~~~~~~~~~g~~~~~~i~~~l~~  238 (356)
                      +.|++.+...+...++.+|..|.+       .+|...+++++...+|..+++.+.+.+.+
T Consensus       328 l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~  387 (448)
T PRK09848        328 IASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILG  387 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999998888753       45888999999999999998888776543

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.19  E-value=1.9e-09  Score=98.74  Aligned_cols=133  Identities=18%  Similarity=0.312  Sum_probs=97.3

Q ss_pred             HHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHh-----hhHHHHHHHHHH
Q 018408          112 SIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQA-----HSLDEMLWGRFL  186 (356)
Q Consensus       112 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~l  186 (356)
                      .+.+++|.  ++.+.+++.+...++..++.++.|++.||+|+|+.+..+..+..++.++....     ++...+++..++
T Consensus       232 ~~~~~~g~--~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (385)
T TIGR00710       232 VYIDIMGV--SPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMF  309 (385)
T ss_pred             HHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence            34457787  56668888999999999999999999999999999988887777776665543     233445556778


Q ss_pred             HHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHH-HHHHHHHhhhccCCCCchhHHHHHH
Q 018408          187 VGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCL-GIITSLFLGIPAEDDPHWWRTMLYI  249 (356)
Q Consensus       187 ~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~-g~~~~~~i~~~l~~~~~~w~~~~~~  249 (356)
                      .|++.+...+....+..|..| ++|+++.++.+..... |...++.++ .+.+..+ |...+..
T Consensus       310 ~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~-~~~~~~~-~~~~~~~  370 (385)
T TIGR00710       310 VGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS-LIHGNTA-WPMSLSC  370 (385)
T ss_pred             HHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH-hccccCh-HHHHHHH
Confidence            889888888888888888887 5799999998766654 555555544 4433333 5444433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.19  E-value=1.2e-09  Score=100.14  Aligned_cols=170  Identities=16%  Similarity=0.221  Sum_probs=125.6

Q ss_pred             HHHHHHhhhhcchhhHHHHHHHhC-CCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHH
Q 018408           95 SNFLFGYHIGVMNGPIVSIAKELG-FEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQ  173 (356)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~  173 (356)
                      ..+..+.....+..+.+.+.++.| .+  ....+.+.++..++-++.-...+++..|+|.|+++.++.+..++=..+.++
T Consensus       215 ~~~l~~~~~~~~~~f~~~yl~~~gg~~--~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~  292 (400)
T PF03825_consen  215 AAFLIGISHAAYYTFFSIYLQELGGYS--GSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAY  292 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcccch--hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            334445555555666666777777 53  333566666666677788889999999999999999999999999988887


Q ss_pred             h-hhHHHHHH----HHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhH-HHHHHHHHHHHHhhhccCCCCch-----
Q 018408          174 A-HSLDEMLW----GRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQ-VGTCLGIITSLFLGIPAEDDPHW-----  242 (356)
Q Consensus       174 ~-~~~~~~~~----~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~-~~~~~g~~~~~~i~~~l~~~~~~-----  242 (356)
                      . ++.+..++    ...+.|+..+........|+.+.+|++.|+++.++++ +...+|..+|..++|.+.++.+.     
T Consensus       293 ~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~  372 (400)
T PF03825_consen  293 FSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFD  372 (400)
T ss_pred             hcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhh
Confidence            7 45444333    3456999999999999999999999999999999976 46789999999999999987651     


Q ss_pred             hHHHHHHhHHHHHHHHHH-hhcccC
Q 018408          243 WRTMLYIASLPGFILALG-MQFTVE  266 (356)
Q Consensus       243 w~~~~~~~~~~~~~~~~~-~~~~~e  266 (356)
                      |...+.+.+.+.++..++ +++++|
T Consensus       373 ~~~~~~v~a~~~~~~~~~f~~~fk~  397 (400)
T PF03825_consen  373 WSAVFLVFAVMALVILVLFVILFKP  397 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccC
Confidence            444555555554444433 333444

>PRK10054 putative transporter; Provisional

Probab=99.19  E-value=4.6e-10  Score=103.43  Aligned_cols=135  Identities=13%  Similarity=0.013  Sum_probs=107.1

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHh-hhHHHHHHHHHHHHhhhhhhhhHHHH
Q 018408          122 NPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQA-HSLDEMLWGRFLVGLGIGVNTVLVPI  200 (356)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~l~G~~~g~~~~~~~~  200 (356)
                      +....+++.+...+......++.|++.||+++|+.+..+.++.+++.+...+. ++.+.+++..++.|++.+...+....
T Consensus       242 ~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~  321 (395)
T PRK10054        242 AEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYM  321 (395)
T ss_pred             HHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            44456677777766666777888999999999999999988888887777654 56666777888999998888888888


Q ss_pred             HHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHHHHH
Q 018408          201 YISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILA  258 (356)
Q Consensus       201 ~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~  258 (356)
                      ++.+..|++.|+++.+..+ ...+|..++|.+++.+.++.+ ....|++.+....+..
T Consensus       322 ~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g-~~~~~~~~~~~~~~~~  377 (395)
T PRK10054        322 LIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLP-PWSLFVILALAIVAAW  377 (395)
T ss_pred             HHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcC-hhhHHHHHHHHHHHHH
Confidence            9999999999999988765 556899999999999999887 6667766544444333

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.18  E-value=5.2e-10  Score=116.73  Aligned_cols=144  Identities=15%  Similarity=0.054  Sum_probs=113.1

Q ss_pred             hhHHHH-HHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHh------------
Q 018408          108 GPIVSI-AKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQA------------  174 (356)
Q Consensus       108 ~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~------------  174 (356)
                      ..+|.+ .+.+|.  +....+++.+.+.+|.++|.++.|+++++.++++.+..+.++.+++.+.+++.            
T Consensus       246 ~~~p~~~~~~~g~--~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  323 (1140)
T PRK06814        246 SQLPLLAKETLGG--DENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLK  323 (1140)
T ss_pred             HHhHHHHHHHcCC--chHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhccccccccccccc
Confidence            344544 455787  56669999999999999999999999998887776666666655555544432            


Q ss_pred             --------hhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHH
Q 018408          175 --------HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTM  246 (356)
Q Consensus       175 --------~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~  246 (356)
                              .+.+.++++.++.|++.+...+...+++.+.+|++.||+++|+.++...+|..+++++.+.+.+...++...
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~  403 (1140)
T PRK06814        324 SILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWI  403 (1140)
T ss_pred             chhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHH
Confidence                    566777788889999999999999999999999999999999999999999999999988886433336666


Q ss_pred             HHHhHHH
Q 018408          247 LYIASLP  253 (356)
Q Consensus       247 ~~~~~~~  253 (356)
                      +++.++.
T Consensus       404 ~~~~~~~  410 (1140)
T PRK06814        404 ILFIALA  410 (1140)
T ss_pred             HHHHHHH
Confidence            6654444

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.18  E-value=4.7e-10  Score=105.82  Aligned_cols=116  Identities=16%  Similarity=0.037  Sum_probs=88.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHH-----hhhHHHHHHHHHHHHhhhhhhhhH
Q 018408          123 PILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQ-----AHSLDEMLWGRFLVGLGIGVNTVL  197 (356)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~l~G~~~g~~~~~  197 (356)
                      ....+++.+...++.+++.++.++++||+|+|+.+.++.++.+++.+....     ..+.+.+++.-++.|++.+...+.
T Consensus       265 ~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~  344 (473)
T PRK10429        265 ADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVL  344 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHH
Confidence            334566667667888999999999999999999998888776666555432     235566667778889999999999


Q ss_pred             HHHHHHhhcC-------CCccchhHHHhHHHHHHHHHHHHHhhhccCC
Q 018408          198 VPIYISEVAP-------TKYRGSLGTLCQVGTCLGIITSLFLGIPAED  238 (356)
Q Consensus       198 ~~~~~~e~~p-------~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~  238 (356)
                      ..++++|..+       .+..|...++..+..-+|..+++.+.+.+.+
T Consensus       345 ~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~  392 (473)
T PRK10429        345 QVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLG  392 (473)
T ss_pred             HHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999965       2334557788888888888888887776554

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.17  E-value=2.2e-10  Score=106.77  Aligned_cols=156  Identities=20%  Similarity=0.214  Sum_probs=115.4

Q ss_pred             hHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhh----hhchhHHHHH-hHHHHHHHHHHHHHh-h-------
Q 018408          109 PIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLAD----KLGCRRTFQI-DTIPLILGAIISAQA-H-------  175 (356)
Q Consensus       109 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~Grr~~~~~-~~~~~~i~~~~~~~~-~-------  175 (356)
                      ..+++.+.+|+  ++...|.+..+.-+..++..++.|.++|    |+||||.+++ +.+..+++.+++... +       
T Consensus        24 ~~~f~~~~~gl--~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~  101 (428)
T PF13347_consen   24 LLYFYTDVLGL--SPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTA  101 (428)
T ss_pred             HHHHHHHHcCC--CHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhh
Confidence            34566777798  6677888888888888888999999999    7998876664 777777777777655 3       


Q ss_pred             hHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCC-CccchhHHHhHHHHHHHHHHHHHhhhccCCCCc------hhHHHHH
Q 018408          176 SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPT-KYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPH------WWRTMLY  248 (356)
Q Consensus       176 ~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~-~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~------~w~~~~~  248 (356)
                      ....+++..++..++.........++..|+.+. ++|.+..+.-..+..+|.++...+.+.+.+..+      +|++..+
T Consensus       102 ~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~  181 (428)
T PF13347_consen  102 KLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMAL  181 (428)
T ss_pred             HHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHH
Confidence            123345666777888888888889999999984 789999999888888888766666665553222      4888888


Q ss_pred             HhHHHHHHHHHHh-hcccC
Q 018408          249 IASLPGFILALGM-QFTVE  266 (356)
Q Consensus       249 ~~~~~~~~~~~~~-~~~~e  266 (356)
                      +.+++.++..+.. +..+|
T Consensus       182 v~~iv~~v~~~i~~~~~ke  200 (428)
T PF13347_consen  182 VLAIVGLVFFLITFFFVKE  200 (428)
T ss_pred             HHHHHHHHHhhhhhheeee
Confidence            8777766665443 44555

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.15  E-value=8.9e-10  Score=101.83  Aligned_cols=133  Identities=9%  Similarity=-0.135  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHH-Hh-----hhHHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 018408          130 VSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISA-QA-----HSLDEMLWGRFLVGLGIGVNTVLVPIYIS  203 (356)
Q Consensus       130 ~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~-~~-----~~~~~~~~~~~l~G~~~g~~~~~~~~~~~  203 (356)
                      ..+..+...+..+++|+++||+|+++++.++.++..++..... ..     .+++.+.+..+...++.|........++.
T Consensus       292 ~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip  371 (462)
T PRK15034        292 AFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIA  371 (462)
T ss_pred             HHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhH
Confidence            3344566788889999999999999999998887777764422 22     24555666555566666777777777888


Q ss_pred             hhcCC---------------------CccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHHHHHHHhh
Q 018408          204 EVAPT---------------------KYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQ  262 (356)
Q Consensus       204 e~~p~---------------------~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~  262 (356)
                      .++|.                     ++-|...|+......+|+++.|.+.+...+..|++...|+...+..++++++.+
T Consensus       372 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w  451 (462)
T PRK15034        372 VIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTW  451 (462)
T ss_pred             HHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence            88874                     145678888899999999999988777777777788888888777776665433

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.15  E-value=3.2e-10  Score=100.62  Aligned_cols=153  Identities=14%  Similarity=0.073  Sum_probs=119.6

Q ss_pred             hhhHH-HHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHh-------hhHH
Q 018408          107 NGPIV-SIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQA-------HSLD  178 (356)
Q Consensus       107 ~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-------~~~~  178 (356)
                      +..+| ++.++||.  ++...+.+...+.+...+..+.+|+++||+|.+|++.+....++++..+..+.       .+..
T Consensus       238 s~~l~~~~~~~fg~--~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~  315 (417)
T COG2223         238 SAYLPMYLVTQFGL--SPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFV  315 (417)
T ss_pred             HHHHHHHHHHhcCC--ChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchH
Confidence            34444 56778898  55558888999999999999999999999999999999999999888887765       3444


Q ss_pred             HHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHHHHH
Q 018408          179 EMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILA  258 (356)
Q Consensus       179 ~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~  258 (356)
                      ..++..+..+++.|.....+..++..++|. +-|...|+......+|+..-|...+...+..+.+...|++.....+++.
T Consensus       316 ~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~  394 (417)
T COG2223         316 VFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVAL  394 (417)
T ss_pred             HHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            455545555555555556666677777765 5789999999999999999999888888888879999998887777776


Q ss_pred             HHhh
Q 018408          259 LGMQ  262 (356)
Q Consensus       259 ~~~~  262 (356)
                      +...
T Consensus       395 v~~~  398 (417)
T COG2223         395 VLTW  398 (417)
T ss_pred             HHHH
Confidence            6443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.15  E-value=1.7e-09  Score=99.97  Aligned_cols=145  Identities=14%  Similarity=0.093  Sum_probs=100.6

Q ss_pred             HHHHHHhCCCCChhHHHHHHHHHH-HHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHH---HHh-hhHHHHHHHHH
Q 018408          111 VSIAKELGFEGNPILEGLVVSIFI-AGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIIS---AQA-HSLDEMLWGRF  185 (356)
Q Consensus       111 ~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~---~~~-~~~~~~~~~~~  185 (356)
                      +.+.+++|+  +..+.+++..... ++..++.+++|++.||+|+|+.+.++.++.++..+..   ++. ++.+.+++..+
T Consensus       234 ~~l~~~~G~--~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~  311 (402)
T PRK11902        234 TFLIRGAGF--SAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIG  311 (402)
T ss_pred             HHHHHhcCC--CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence            456677888  5666788776544 4688999999999999999998877776666554433   333 34455554443


Q ss_pred             ----HHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHHHHHHHh
Q 018408          186 ----LVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGM  261 (356)
Q Consensus       186 ----l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~  261 (356)
                          +.|++.+...+....++.+.+|.+.    .++++....+|..+++.+++.+.+..| |+..|.+.++++++.+++.
T Consensus       312 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~G~l~~~~G-~~~~f~~~~~~~~~~~~~~  386 (402)
T PRK11902        312 IENLCGGMGTAAFVALLMALCNRSFSATQ----YALLSALASVGRVYVGPTSGYLVEAYG-WPGFYLMTVVIALPGLALL  386 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCcHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHH
Confidence                4555566666666667666666544    455555566777766778888888888 9999999888877766554


Q ss_pred             h
Q 018408          262 Q  262 (356)
Q Consensus       262 ~  262 (356)
                      .
T Consensus       387 ~  387 (402)
T PRK11902        387 W  387 (402)
T ss_pred             H
Confidence            3

>TIGR00901 2A0125 AmpG-related permease

Probab=99.14  E-value=2e-09  Score=97.78  Aligned_cols=118  Identities=17%  Similarity=0.121  Sum_probs=93.0

Q ss_pred             hcchhhHHHHHHHhCCCCChhHHHHHHHHHH-HHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHh--------
Q 018408          104 GVMNGPIVSIAKELGFEGNPILEGLVVSIFI-AGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQA--------  174 (356)
Q Consensus       104 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~--------  174 (356)
                      .......|.+.+++|+  +..+.+.+..... ++..++.+++|++.||+|||+.++++.++.+++..+..+.        
T Consensus       226 ~~~~~~~~~~l~~~g~--~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  303 (356)
T TIGR00901       226 SAATVLTTLFLLDMGF--SKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDG  303 (356)
T ss_pred             HHHHHHHHHHHHHcCC--CHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence            3344455666566887  5666777776655 5778999999999999999999988888887776655443        


Q ss_pred             ---hhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHH
Q 018408          175 ---HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTC  223 (356)
Q Consensus       175 ---~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~  223 (356)
                         ++.+.++.+.++.+++.+...+...+++.|.+|+++||+.+|+++...+
T Consensus       304 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       304 ITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence               3456677778889999999999999999999999999999999876543

>PRK09669 putative symporter YagG; Provisional

Probab=99.13  E-value=1e-09  Score=102.80  Aligned_cols=149  Identities=13%  Similarity=0.091  Sum_probs=103.5

Q ss_pred             hHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhh----hchhHH-HHHhHHHHHHHHHHHHHhhh------H
Q 018408          109 PIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADK----LGCRRT-FQIDTIPLILGAIISAQAHS------L  177 (356)
Q Consensus       109 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~Grr~~-~~~~~~~~~i~~~~~~~~~~------~  177 (356)
                      ...++.+.+|+  +....|.+..+.-+...+..++.|+++||    +||||. ++.+.+..+++.++....++      .
T Consensus        32 l~~~~t~~~gl--s~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~  109 (444)
T PRK09669         32 LAYFYTDVFGL--SAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKI  109 (444)
T ss_pred             HHHHHHHhcCC--CHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHH
Confidence            34566778898  67779999999999999999999999999    788655 44566777666655544432      3


Q ss_pred             HHHHHHHHHHHhhhhhhhhHHHHHHHhhcC-CCccchhHHHhHHHHHHHHHHHHHhhh----ccCC---CCchhHHHHHH
Q 018408          178 DEMLWGRFLVGLGIGVNTVLVPIYISEVAP-TKYRGSLGTLCQVGTCLGIITSLFLGI----PAED---DPHWWRTMLYI  249 (356)
Q Consensus       178 ~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p-~~~r~~~~~~~~~~~~~g~~~~~~i~~----~l~~---~~~~w~~~~~~  249 (356)
                      ..+++..++.+.+.........++.+|+.+ +++|.+..++...+..+|..+++.+..    .+..   ..+ |+..+.+
T Consensus       110 ~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g-~~~~~~i  188 (444)
T PRK09669        110 IYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKG-YFYAMMV  188 (444)
T ss_pred             HHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhh-HHHHHHH
Confidence            444555566677776777777788999884 577998888877777777666654332    2221   123 8877777


Q ss_pred             hHHHHHHHHHH
Q 018408          250 ASLPGFILALG  260 (356)
Q Consensus       250 ~~~~~~~~~~~  260 (356)
                      .+++.++..+.
T Consensus       189 ~~ii~~v~~~~  199 (444)
T PRK09669        189 MGLLGVVLFFC  199 (444)
T ss_pred             HHHHHHHHHHH
Confidence            66665555443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.13  E-value=9.8e-10  Score=104.02  Aligned_cols=131  Identities=17%  Similarity=0.152  Sum_probs=108.6

Q ss_pred             hhhHHHHH-HHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHH----hhhHHHHH
Q 018408          107 NGPIVSIA-KELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQ----AHSLDEML  181 (356)
Q Consensus       107 ~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~----~~~~~~~~  181 (356)
                      ...+|.+. +.+|+  +..+.++......++..++.++.|++.||+|||+.+.++..+.+++..+..+    ..+.+.++
T Consensus       275 ~~~~p~~~~~~~g~--s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  352 (485)
T TIGR00711       275 FYLLPLYLQQVLGY--TALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIA  352 (485)
T ss_pred             HHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHH
Confidence            34455554 45687  5667899999999999999999999999999999999998888888877662    13456666


Q ss_pred             HHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCC
Q 018408          182 WGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDD  239 (356)
Q Consensus       182 ~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~  239 (356)
                      ...++.|++.+...+.......+..|+++|+.+.++.+....+|..+++.+.+.+.++
T Consensus       353 ~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       353 LPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTN  410 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7788899999988877777888889999999999999999999999999998877654

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.12  E-value=1e-09  Score=99.03  Aligned_cols=126  Identities=31%  Similarity=0.420  Sum_probs=104.1

Q ss_pred             hcchhhHHHH-HHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHh---hhHHH
Q 018408          104 GVMNGPIVSI-AKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQA---HSLDE  179 (356)
Q Consensus       104 ~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~---~~~~~  179 (356)
                      .......|.+ .+.+|.+ +..+.+++.+...++..++.++.|++.||+|+|+.+.+......+..+...+.   .+...
T Consensus       223 ~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (352)
T PF07690_consen  223 SGFSFFLPLYLQEVLGFS-GPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVW  301 (352)
T ss_dssp             HHHHHHHHHHCCHHHHCC-THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHH
T ss_pred             HHhhcccchhhhhccCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            3355556665 7888884 25668888999999999999999999999999888777777766666665443   34566


Q ss_pred             HHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHH
Q 018408          180 MLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSL  230 (356)
Q Consensus       180 ~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~  230 (356)
                      .++..++.|++.+...+....++.|.+|+++||++.|+.+....+|..++|
T Consensus       302 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  302 LIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            777888899999999999999999999999999999999999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.10  E-value=2.1e-09  Score=100.18  Aligned_cols=146  Identities=20%  Similarity=0.132  Sum_probs=115.2

Q ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHH-hCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHH
Q 018408           90 LIASMSNFLFGYHIGVMNGPIVSIAKE-LGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA  168 (356)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~  168 (356)
                      ..+.+..+.........+...+++.++ +|.   +...+.+..+..++..++.+++++++||+|+|+.+..+.++.+++.
T Consensus       228 ~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~---~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~  304 (428)
T PF13347_consen  228 RILLLAFFLQWLAFALMNTFLPYYFTYVLGN---EGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGF  304 (428)
T ss_pred             HHHHHHHHHHHhhhhhhhhHHHHHHHHHhcC---chhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHH
Confidence            333444444444555555555666555 443   2346777888899999999999999999999999999999999999


Q ss_pred             HHHHHhh--hHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCC-------CccchhHHHhHHHHHHHHHHHHHhhhccCC
Q 018408          169 IISAQAH--SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPT-------KYRGSLGTLCQVGTCLGIITSLFLGIPAED  238 (356)
Q Consensus       169 ~~~~~~~--~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~-------~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~  238 (356)
                      ++..+.+  +.+.+++..++.|++.+..+....++++|..+.       +..|...++.++...+|..+++.+.+.+.+
T Consensus       305 ~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~  383 (428)
T PF13347_consen  305 LLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLA  383 (428)
T ss_pred             HHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence            9888876  899999999999999999999999999998873       335788888888888888888887776543

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.10  E-value=4.7e-10  Score=101.39  Aligned_cols=169  Identities=18%  Similarity=0.166  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHH-HhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHH-
Q 018408           89 VLIASMSNFLFGYHIGVMNGPIVSIAK-ELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLIL-  166 (356)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i-  166 (356)
                      .+..+...+...+..+...+..+...+ ..|+  +.++.|.+.++..+...+.+++.|.++||+|.||-++.......+ 
T Consensus         9 ~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GL--s~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l   86 (412)
T PF01306_consen    9 YWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGL--SGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLL   86 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccccCC--CHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHH
Confidence            344455555555666666676665554 5899  778899999999999999999999999999977765543322221 


Q ss_pred             -HHHHH-HHh----hhH-HHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCC
Q 018408          167 -GAIIS-AQA----HSL-DEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDD  239 (356)
Q Consensus       167 -~~~~~-~~~----~~~-~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~  239 (356)
                       +.... .+.    .|. ...+++-+..|++.....++.-+++.++.  ++.+.=.|-.-+++++|.+++..++|.+.+.
T Consensus        87 ~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i  164 (412)
T PF01306_consen   87 FGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNI  164 (412)
T ss_dssp             CHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeee
Confidence             22111 122    232 22333344455555556666666655543  3345555667788999999999999988764


Q ss_pred             CchhHHHHHHhHHHHHHHHHHhhc
Q 018408          240 PHWWRTMLYIASLPGFILALGMQF  263 (356)
Q Consensus       240 ~~~w~~~~~~~~~~~~~~~~~~~~  263 (356)
                      .  -...|+++....++..++.++
T Consensus       165 ~--p~~~fwi~s~~~~il~lll~~  186 (412)
T PF01306_consen  165 N--PNIIFWIASAAAIILLLLLLL  186 (412)
T ss_dssp             H--HHHHHHHHHHHHHHHHHHHHS
T ss_pred             C--ccHHHHHHHHHHHHHHHHHHH
Confidence            2  456777766555555444433

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.08  E-value=4.5e-09  Score=99.22  Aligned_cols=167  Identities=11%  Similarity=0.046  Sum_probs=108.0

Q ss_pred             HHhhhhcchhhH-HHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhh----hhchhH-HHHHhHHHHHHHHHHHH
Q 018408           99 FGYHIGVMNGPI-VSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLAD----KLGCRR-TFQIDTIPLILGAIISA  172 (356)
Q Consensus        99 ~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~Grr~-~~~~~~~~~~i~~~~~~  172 (356)
                      .++.......++ .++.+.+|+  +....|.+..+.-+.-++..++.|.++|    |+|||| .++++.+..+++.+++.
T Consensus        18 ~~~~~~~~~~~l~~yyt~v~Gl--s~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf   95 (473)
T PRK10429         18 KDFAIGIVYMYLMYYYTDVVGL--SVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLF   95 (473)
T ss_pred             HhHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHH
Confidence            333333444444 455666788  6777999999988889999999999999    569955 55557777777765554


Q ss_pred             Hhhh------HHHHHHHHHHHHhhhhhhhhHHHHHHHhhc-CCCccchhHHHhHHHHHHHHHHHHHhhhcc----C--CC
Q 018408          173 QAHS------LDEMLWGRFLVGLGIGVNTVLVPIYISEVA-PTKYRGSLGTLCQVGTCLGIITSLFLGIPA----E--DD  239 (356)
Q Consensus       173 ~~~~------~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l----~--~~  239 (356)
                      ..++      +..+++..++.+++.........++..|+. ++++|.+..++-..+..+|+.+.+.+...+    .  +.
T Consensus        96 ~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~  175 (473)
T PRK10429         96 SAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDR  175 (473)
T ss_pred             cCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCch
Confidence            4321      233444556677888888888888999998 578899988886666666655544433221    1  11


Q ss_pred             CchhHHHHHHhHHHHHHHHHH-hhcccCC
Q 018408          240 PHWWRTMLYIASLPGFILALG-MQFTVES  267 (356)
Q Consensus       240 ~~~w~~~~~~~~~~~~~~~~~-~~~~~e~  267 (356)
                      ..+|+....+.+++.++..+. .+..+|.
T Consensus       176 ~~g~~~~~~i~~~~~~~~~~~~~~~~~e~  204 (473)
T PRK10429        176 GFGFQMFTLVLIAFFIVSTIITLRNVHEV  204 (473)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHcCceec
Confidence            112676666666555544433 3335554

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.07  E-value=2.1e-08  Score=88.03  Aligned_cols=153  Identities=16%  Similarity=0.115  Sum_probs=104.1

Q ss_pred             HHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhh
Q 018408          112 SIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGI  191 (356)
Q Consensus       112 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~G~~~  191 (356)
                      .+.+++|+  +..+++.+...-+....+...+.|.++||+|||+..++.+++.+++++. -..+++..++++|++.|++.
T Consensus        59 ~LY~~yg~--~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~-k~~~~~~~L~~GRvlgGiaT  135 (354)
T PF05631_consen   59 ALYESYGF--SEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT-KHSSNYPVLLLGRVLGGIAT  135 (354)
T ss_pred             HHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH-HhccccHHHHHHHHHHHHHH
Confidence            34467888  5556788888888888889999999999999999999999998888864 35588999999999999999


Q ss_pred             hhhhhHHHHHH-Hhhc----CCCccchhHHHhH-HHHHHHHHHHHHhhhccCCCCc-hhHHHHHHhHHHHHHHHHHhh-c
Q 018408          192 GVNTVLVPIYI-SEVA----PTKYRGSLGTLCQ-VGTCLGIITSLFLGIPAEDDPH-WWRTMLYIASLPGFILALGMQ-F  263 (356)
Q Consensus       192 g~~~~~~~~~~-~e~~----p~~~r~~~~~~~~-~~~~~g~~~~~~i~~~l~~~~~-~w~~~~~~~~~~~~~~~~~~~-~  263 (356)
                      ...+..-.+++ .|.-    |.+..+...+... ....+-.+++.+++..+.+..+ +-.++|..++.+.+++.+++. .
T Consensus       136 SLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~  215 (354)
T PF05631_consen  136 SLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKT  215 (354)
T ss_pred             HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhc
Confidence            99888776654 3432    2222222222222 2233444555555555555443 136677777766666655443 3


Q ss_pred             ccCC
Q 018408          264 TVES  267 (356)
Q Consensus       264 ~~e~  267 (356)
                      .+|.
T Consensus       216 W~EN  219 (354)
T PF05631_consen  216 WPEN  219 (354)
T ss_pred             cccc
Confidence            4554

>PRK10133 L-fucose transporter; Provisional

Probab=99.07  E-value=6.6e-09  Score=96.97  Aligned_cols=139  Identities=12%  Similarity=-0.039  Sum_probs=106.1

Q ss_pred             HHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhh
Q 018408          114 AKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGV  193 (356)
Q Consensus       114 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~G~~~g~  193 (356)
                      ++.+|+  ++.+.++....+.+++.+|.+++|++.||+|+|+++..+.++.+++.++..+.++.. .++..++.|++.+.
T Consensus       287 ~~~~g~--s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~glg~~~  363 (438)
T PRK10133        287 EEIPGM--TAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCSAFMSI  363 (438)
T ss_pred             hhcCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHH
Confidence            345687  677789999999999999999999999999999999888877777766665555532 24567789999999


Q ss_pred             hhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHHHH
Q 018408          194 NTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFIL  257 (356)
Q Consensus       194 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~  257 (356)
                      .+|.......+.+|++ .+.+.++..+ ..+|+.++|.+.+.+.+..|+-+..|++..+..+..
T Consensus       364 i~P~~~s~a~~~~~~~-~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~  425 (438)
T PRK10133        364 QYPTIFSLGIKNLGQD-TKYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI  425 (438)
T ss_pred             HHHHHHHHHHcccchh-hccchhHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence            9999999999988754 5677777754 446788888888888776543566666544444433

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.07  E-value=3.7e-09  Score=100.39  Aligned_cols=128  Identities=14%  Similarity=0.055  Sum_probs=107.3

Q ss_pred             hHH-HHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHh---hhHHHHHHHH
Q 018408          109 PIV-SIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQA---HSLDEMLWGR  184 (356)
Q Consensus       109 ~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~  184 (356)
                      ..| +++..+|+  +..+.+.....+.++..++.++.|++.||+|+|+.+..+.++.+++.++....   ++.+..++..
T Consensus       281 ~~~~~lq~v~g~--s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~  358 (495)
T PRK14995        281 LMAQELQFVHGL--SPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLM  358 (495)
T ss_pred             HHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence            344 44555788  67779999999999999999999999999999999988888887777655432   3555566678


Q ss_pred             HHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCC
Q 018408          185 FLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAED  238 (356)
Q Consensus       185 ~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~  238 (356)
                      ++.|++.|...+.....+.+..|+++++.+.+++++...+|..+|+.+.+.+.+
T Consensus       359 ~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        359 ALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             HHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999988888888999999999999999999999999999999887753

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.05  E-value=8.9e-09  Score=94.81  Aligned_cols=142  Identities=15%  Similarity=0.035  Sum_probs=107.1

Q ss_pred             HHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q 018408          111 VSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLG  190 (356)
Q Consensus       111 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~G~~  190 (356)
                      +++.+.+|.  ++.+.|++.+...+|..+++++.+++.||.++++.+..+. +.++..+...+.++++..++..++.|++
T Consensus       230 ~~~~~~lg~--s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~  306 (393)
T PRK11195        230 AWAPVALGI--TLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQHSLLPAYPLLILIGAL  306 (393)
T ss_pred             HHHHHHcCC--ChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence            345566787  5666999999999999999999999999999998887775 3444444555666777677778889999


Q ss_pred             hhhhhhHHHHHHHhhcCCCc-cchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHHHH
Q 018408          191 IGVNTVLVPIYISEVAPTKY-RGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFIL  257 (356)
Q Consensus       191 ~g~~~~~~~~~~~e~~p~~~-r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~  257 (356)
                      .+...+...+.+.+..|++. +|++.++.++...+|..++..+.+.+ +..+ -+..+++.++..++.
T Consensus       307 ~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~  372 (393)
T PRK11195        307 GGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLG-VPVVAVIVGFGLLVA  372 (393)
T ss_pred             hhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcC-CCHHHHHHHHHHHHH
Confidence            88888878888888766654 79999999999999999999888855 3444 445455443333333

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.05  E-value=1.6e-10  Score=103.22  Aligned_cols=180  Identities=14%  Similarity=-0.024  Sum_probs=129.4

Q ss_pred             HHHHHHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHH------HHHHH-HHHHHHHHHHHhHHhhhhhhchhHHHHHh
Q 018408           88 HVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILE------GLVVS-IFIAGAFVGSISSGSLADKLGCRRTFQID  160 (356)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------~~~~~-~~~~~~~~~~~~~g~l~dr~Grr~~~~~~  160 (356)
                      .++..+..+|+.-...+..+.....+.+..|+..+....      ..... +...+++.|..+...++|++|||++.+.+
T Consensus       305 ~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~G  384 (538)
T KOG0252|consen  305 HLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMG  384 (538)
T ss_pred             HHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhh
Confidence            355566667777666666677777788877764332211      11111 22333445777788899999999999999


Q ss_pred             HHHHHHHHHHHHHhhh----HHHHHHHHHHHHhh-hhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhc
Q 018408          161 TIPLILGAIISAQAHS----LDEMLWGRFLVGLG-IGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIP  235 (356)
Q Consensus       161 ~~~~~i~~~~~~~~~~----~~~~~~~~~l~G~~-~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~  235 (356)
                      .+++.+..+..+...|    -..+++...+..++ .-+.......+.+|.||.+.|+++.|+..++.-+|++++......
T Consensus       385 F~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~  464 (538)
T KOG0252|consen  385 FFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLY  464 (538)
T ss_pred             HHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhH
Confidence            9999999998887655    11222222222221 222344455577999999999999999999999999999998888


Q ss_pred             cCC-----CCchhHHHHHHhHHHHHHHHHHhhcccCCh
Q 018408          236 AED-----DPHWWRTMLYIASLPGFILALGMQFTVESP  268 (356)
Q Consensus       236 l~~-----~~~~w~~~~~~~~~~~~~~~~~~~~~~e~p  268 (356)
                      +.+     ..+ .+.++++.+...++..+..+++||+.
T Consensus       465 ~t~~~yp~~~g-~~~v~~i~~~~~~~gi~~T~l~pEtk  501 (538)
T KOG0252|consen  465 LTDHNYPPNIG-VRNVFIILAGCMLLGILFTLLIPETK  501 (538)
T ss_pred             hhhccCCcccc-chHHHHHHHHHHHHhHheeEEeeccc
Confidence            887     455 89999999999999999999999983

>PRK09669 putative symporter YagG; Provisional

Probab=99.04  E-value=1.2e-08  Score=95.50  Aligned_cols=114  Identities=13%  Similarity=0.039  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHH--hhhHHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 018408          126 EGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQ--AHSLDEMLWGRFLVGLGIGVNTVLVPIYIS  203 (356)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~  203 (356)
                      .+.+.....+..+++.+++++++||+|+|+.+.++.++.++..+...+  .++.+.+++..++.|++.+...+...++++
T Consensus       266 ~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~a  345 (444)
T PRK09669        266 ATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFS  345 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555666777888999999999999999998887766654443332  246666777788999999999999999999


Q ss_pred             hhcCC-------CccchhHHHhHHHHHHHHHHHHHhhhccCCC
Q 018408          204 EVAPT-------KYRGSLGTLCQVGTCLGIITSLFLGIPAEDD  239 (356)
Q Consensus       204 e~~p~-------~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~  239 (356)
                      |..+.       +..|...++.+....+|..+++.+++.+.+.
T Consensus       346 d~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~  388 (444)
T PRK09669        346 DVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAW  388 (444)
T ss_pred             hhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            98862       3345677888888888888888887766543

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.03  E-value=3.4e-08  Score=90.33  Aligned_cols=121  Identities=14%  Similarity=0.118  Sum_probs=85.7

Q ss_pred             HHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHH---Hh-hhHHHHHHHHHHH
Q 018408          112 SIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISA---QA-HSLDEMLWGRFLV  187 (356)
Q Consensus       112 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~---~~-~~~~~~~~~~~l~  187 (356)
                      .+.+.+|.  +..+.+++.+...++..++.++.|++.||+|||+.+.++..+..+..+...   .. .+.+.++++..+.
T Consensus       220 ~~~~~~g~--s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (377)
T PRK11102        220 VYIELNGV--SPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAF  297 (377)
T ss_pred             HHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            45566788  566789999999999999999999999999999999888766544433322   12 2344444444455


Q ss_pred             HhhhhhhhhHHHHHHHhhcCCCccchhHHHhHH-HHHHHHHHHHHhhhc
Q 018408          188 GLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQV-GTCLGIITSLFLGIP  235 (356)
Q Consensus       188 G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~-~~~~g~~~~~~i~~~  235 (356)
                      +.+.+........++.|..| +.++.+.++.+. ...+|..+++++++.
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~~  345 (377)
T PRK11102        298 VGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSLA  345 (377)
T ss_pred             HHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            55555555666667778776 789999998654 456778888877654

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.01  E-value=5.5e-09  Score=94.54  Aligned_cols=143  Identities=16%  Similarity=0.060  Sum_probs=120.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 018408          123 PILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYI  202 (356)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~  202 (356)
                      +...|.+.+...+.-++...+..++.+|+|.|+.++++.+++++=.++++++++.+.+.+.+.+.|+-.+.......-|+
T Consensus       258 ~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI  337 (412)
T PF01306_consen  258 NQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYI  337 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34578888888888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCCccchhHHH-hHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHHHHHHHh-hcccC
Q 018408          203 SEVAPTKYRGSLGTL-CQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGM-QFTVE  266 (356)
Q Consensus       203 ~e~~p~~~r~~~~~~-~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e  266 (356)
                      ++.+|++..++...+ .+....+|..+.+.++|.+.|+.| .+..|++.+.+.++..++. +.+++
T Consensus       338 ~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G-~~~tylimg~iv~~~~li~~f~l~~  402 (412)
T PF01306_consen  338 TAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIG-FQHTYLIMGLIVLPFTLISAFTLKK  402 (412)
T ss_dssp             HHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred             HHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcC-cHHHHHHHHHHHHHHHHHheeeecC
Confidence            999999988888887 479999999999999999999988 8888887766666555444 44443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.01  E-value=1.8e-08  Score=93.28  Aligned_cols=143  Identities=12%  Similarity=-0.140  Sum_probs=103.2

Q ss_pred             hhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 018408          107 NGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFL  186 (356)
Q Consensus       107 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l  186 (356)
                      ...++.+.++.+.+.+....+...+.+..+..+|.++++++.||+++|+++.+..++.++..++....++... +++-++
T Consensus       252 ~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~-~~~l~~  330 (410)
T TIGR00885       252 WTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVG-LYCLTL  330 (410)
T ss_pred             HHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-HHHHHH
Confidence            3445555555443334433455666677788999999999999999999999988888888888877766544 456677


Q ss_pred             HHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCC-----chhHHHHHHhHH
Q 018408          187 VGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP-----HWWRTMLYIASL  252 (356)
Q Consensus       187 ~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~-----~~w~~~~~~~~~  252 (356)
                      .|++.+..+|.......+..+++.+....++.. + .+|+++.|.+.|.+.|+.     ++.+..|++..+
T Consensus       331 ~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~-~-~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~  399 (410)
T TIGR00885       331 CSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVM-A-IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLL  399 (410)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH-H-HhccchHHHHHHHHHHHhcccccCccchHHHHHHH
Confidence            888888888999999999998665433333333 2 399999999999999853     236666665433

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.01  E-value=4.1e-08  Score=85.74  Aligned_cols=157  Identities=17%  Similarity=0.168  Sum_probs=125.9

Q ss_pred             hhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhh-chhHHHHHhHHHHHHHHHHHHHhhhHHH
Q 018408          101 YHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKL-GCRRTFQIDTIPLILGAIISAQAHSLDE  179 (356)
Q Consensus       101 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~i~~~~~~~~~~~~~  179 (356)
                      +..+....++|.+..|.|+  +..+.|++.+...+......+....+++|. .+|+..+....++.++.+.+.+.+....
T Consensus       222 ~~~Y~~~~WLP~ili~~G~--sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~  299 (395)
T COG2807         222 LLYYIVIGWLPAILIDRGL--SAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLP  299 (395)
T ss_pred             HHHHHHHHHHHHHHHHcCC--CHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHH
Confidence            3444556778999999999  677799999999999999999999999965 6777777788888888887777765444


Q ss_pred             HHHHHHHHHhhhhhhhhHHHHHHHhhcCC-CccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHHHHH
Q 018408          180 MLWGRFLVGLGIGVNTVLVPIYISEVAPT-KYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILA  258 (356)
Q Consensus       180 ~~~~~~l~G~~~g~~~~~~~~~~~e~~p~-~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~  258 (356)
                      +.. .+++|++.|+.++....++..-.+. ++-+...++.+....+=..++|.+.|++-|..|+|+..++..+...++..
T Consensus       300 ~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~  378 (395)
T COG2807         300 ILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLML  378 (395)
T ss_pred             HHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHH
Confidence            333 4899999999999999999887765 44566667788888888889999999999999999988887766666554


Q ss_pred             HH
Q 018408          259 LG  260 (356)
Q Consensus       259 ~~  260 (356)
                      +.
T Consensus       379 i~  380 (395)
T COG2807         379 IF  380 (395)
T ss_pred             HH
Confidence            43

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.00  E-value=1.1e-08  Score=94.28  Aligned_cols=119  Identities=15%  Similarity=0.180  Sum_probs=78.3

Q ss_pred             HHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhh
Q 018408          112 SIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGI  191 (356)
Q Consensus       112 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~G~~~  191 (356)
                      .+.+++|.  +..+.+.+.+...++..++.++.+++.||+|||+.+.++..+..++.++..+.++....++...+.+.+.
T Consensus       229 ~~~~~~g~--~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  306 (392)
T PRK10473        229 LLMEQMGF--SRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGF  306 (392)
T ss_pred             HHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567788  5556788888889999999999999999999999999999888888887777665554444444444444


Q ss_pred             hhhhhHHHHHHHhhcCCCcc-chhHHHhHHHHHHHHHHHHHhhh
Q 018408          192 GVNTVLVPIYISEVAPTKYR-GSLGTLCQVGTCLGIITSLFLGI  234 (356)
Q Consensus       192 g~~~~~~~~~~~e~~p~~~r-~~~~~~~~~~~~~g~~~~~~i~~  234 (356)
                      +...+..  ...+..|.++| |.+.++..++..+|..+++.+.+
T Consensus       307 ~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~l~~  348 (392)
T PRK10473        307 SVGFGVA--MSQALGPFSLRAGVASSTLGIAQVCGSSLWIWLAA  348 (392)
T ss_pred             HHHhHHH--HHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            4433332  33455565444 33444444444445444444443

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.99  E-value=2.4e-12  Score=120.68  Aligned_cols=158  Identities=20%  Similarity=0.088  Sum_probs=102.2

Q ss_pred             chhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHH--H---hhh----
Q 018408          106 MNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISA--Q---AHS----  176 (356)
Q Consensus       106 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~--~---~~~----  176 (356)
                      .....+.+.+..+.+..    -.......+...++.+++.++.||+|||+.++++.++.+++.+..+  .   .++    
T Consensus       272 ~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (451)
T PF00083_consen  272 IFYYSPSIFENAGISNS----FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWW  347 (451)
T ss_pred             ccccccccccccccccc----ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            33445667777777433    1222333444556777777999999999999999888888877664  1   112    


Q ss_pred             HHHHHHHHHHHHhhhh-hhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHH
Q 018408          177 LDEMLWGRFLVGLGIG-VNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGF  255 (356)
Q Consensus       177 ~~~~~~~~~l~G~~~g-~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~  255 (356)
                      -...++.-.+..++.+ +..+..+.+.+|.+|++.|+++.++......+++++++.+...+.+..+.+.....+.++..+
T Consensus       348 ~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i  427 (451)
T PF00083_consen  348 SILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLI  427 (451)
T ss_pred             ccccceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHH
Confidence            1111222222222222 344666688899999999999999998888899999988887777665423333333344444


Q ss_pred             HHHHHhhcccCC
Q 018408          256 ILALGMQFTVES  267 (356)
Q Consensus       256 ~~~~~~~~~~e~  267 (356)
                      ..++.++++|||
T Consensus       428 ~~i~~~~~lpET  439 (451)
T PF00083_consen  428 AIIFVYFFLPET  439 (451)
T ss_pred             HHhheeEEEeeC
Confidence            445667889999

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK11043 putative transporter; Provisional

Probab=98.98  E-value=1.2e-07  Score=87.48  Aligned_cols=130  Identities=15%  Similarity=0.066  Sum_probs=96.6

Q ss_pred             hhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHH---H--hhhHHHHHH
Q 018408          108 GPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISA---Q--AHSLDEMLW  182 (356)
Q Consensus       108 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~---~--~~~~~~~~~  182 (356)
                      ...|.+.+++|+  +..+.++......++..++.++.+++.||+|+|+.+....++.+++.+...   .  .++...+++
T Consensus       224 ~~~p~~~~~~g~--s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (401)
T PRK11043        224 TGSPFILEQMGY--SPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLI  301 (401)
T ss_pred             HHhHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHH
Confidence            345666677888  566678877777888899999999999999999877665555444433322   2  234555556


Q ss_pred             HHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCC
Q 018408          183 GRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP  240 (356)
Q Consensus       183 ~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~  240 (356)
                      ...+.|++.+..++.......+..| ++||+++++++.....++.+++.+.+.+.+..
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~  358 (401)
T PRK11043        302 PFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALISTP  358 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence            6677888888888888877777776 57999999999888888888888888887644

>PRK11462 putative transporter; Provisional

Probab=98.94  E-value=5.6e-08  Score=91.34  Aligned_cols=147  Identities=16%  Similarity=0.091  Sum_probs=103.9

Q ss_pred             HHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhh----hchhHHHHH-hHHHHHHHHHHHHHhhh------HHH
Q 018408          111 VSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADK----LGCRRTFQI-DTIPLILGAIISAQAHS------LDE  179 (356)
Q Consensus       111 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~Grr~~~~~-~~~~~~i~~~~~~~~~~------~~~  179 (356)
                      .++.+..|+  ++...|.+..+.-+.-++.-++.|.++||    +||||.+++ +.+..+++.+++...+.      ...
T Consensus        34 ~fyt~~~Gl--~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y  111 (460)
T PRK11462         34 FFYTDIFGI--PAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIY  111 (460)
T ss_pred             HHHHHhhCC--CHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHH
Confidence            455667788  67778888888888888999999999996    698876654 66777777666554442      233


Q ss_pred             HHHHHHHHHhhhhhhhhHHHHHHHhhcC-CCccchhHHHhHHHHHHHHHHHHHhhhccCCCC------chhHHHHHHhHH
Q 018408          180 MLWGRFLVGLGIGVNTVLVPIYISEVAP-TKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP------HWWRTMLYIASL  252 (356)
Q Consensus       180 ~~~~~~l~G~~~g~~~~~~~~~~~e~~p-~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~------~~w~~~~~~~~~  252 (356)
                      +++.-++..++.........++.+|+.+ +++|.+..++...+..+|..+++.+...+....      .+|+....+.++
T Consensus       112 ~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~i  191 (460)
T PRK11462        112 AAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSV  191 (460)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHH
Confidence            4445566788888888888899999997 688999999988888888777766543322211      126666666555


Q ss_pred             HHHHHHH
Q 018408          253 PGFILAL  259 (356)
Q Consensus       253 ~~~~~~~  259 (356)
                      +.+++.+
T Consensus       192 i~~i~~~  198 (460)
T PRK11462        192 VAFMMLA  198 (460)
T ss_pred             HHHHHHH
Confidence            5544443

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.93  E-value=9.6e-08  Score=91.12  Aligned_cols=175  Identities=14%  Similarity=0.056  Sum_probs=111.3

Q ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHH
Q 018408           89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA  168 (356)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~  168 (356)
                      ...+.+..+....+......+.+.+.+..|.+.+.   .+...+..+...++..+...+.||+|||+.++.+...+.++.
T Consensus       297 ~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~---~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~  373 (513)
T KOG0254|consen  297 IIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT---FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICL  373 (513)
T ss_pred             HHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch---HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHH
Confidence            33445555555566666667778888888885332   344555556667777888999999999999999999999999


Q ss_pred             HHHHHhhhH-------------HHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhc
Q 018408          169 IISAQAHSL-------------DEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIP  235 (356)
Q Consensus       169 ~~~~~~~~~-------------~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~  235 (356)
                      ++++.....             ..+...-+.......+..++.+.+.+|.+|.+.|+++.++......+...+-......
T Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~  453 (513)
T KOG0254|consen  374 VILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPF  453 (513)
T ss_pred             HHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            887754211             1222222333333334456677889999999999999999766555555444433333


Q ss_pred             cCCCCchhHHHHHH-hHHHHHHHH-HHhhcccCC
Q 018408          236 AEDDPHWWRTMLYI-ASLPGFILA-LGMQFTVES  267 (356)
Q Consensus       236 l~~~~~~w~~~~~~-~~~~~~~~~-~~~~~~~e~  267 (356)
                      .....+ +...|.+ .++..+... ...+++||+
T Consensus       454 ~~~~~~-~~~~f~~f~~~~~~~~~~fv~~~~pET  486 (513)
T KOG0254|consen  454 ITEALG-IGGTFGYFGGICLLSLIIFVFFFVPET  486 (513)
T ss_pred             HHHhcc-ccchHHHHHHHHHHHHHHHheEEcccC
Confidence            333222 2233443 333333334 467779998

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.91  E-value=9.1e-08  Score=84.01  Aligned_cols=154  Identities=27%  Similarity=0.429  Sum_probs=117.9

Q ss_pred             hhhhcchhhHHHHHHHhCCCCCh-hHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhhh--H
Q 018408          101 YHIGVMNGPIVSIAKELGFEGNP-ILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHS--L  177 (356)
Q Consensus       101 ~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~--~  177 (356)
                      +.........+.+..+++.+. . ...++..+.+.++..++.++.|.++||+|||+.+..+.....++.+..++..+  .
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (338)
T COG0477          16 LDLGLLSPALPLLLSTLSLSS-GRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGL   94 (338)
T ss_pred             HhcchHHHHHHHHHHHcCCCc-hhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchH
Confidence            444555556667777766521 1 34788899999999999999999999999998888887765666666666665  8


Q ss_pred             HHHHHHHHHHHhhhhhhhhHHHHHHHhhcCC-CccchhHHHhHH-HHHHHHHHHHHhhhccCCC--CchhHHHHHHhHHH
Q 018408          178 DEMLWGRFLVGLGIGVNTVLVPIYISEVAPT-KYRGSLGTLCQV-GTCLGIITSLFLGIPAEDD--PHWWRTMLYIASLP  253 (356)
Q Consensus       178 ~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~-~~r~~~~~~~~~-~~~~g~~~~~~i~~~l~~~--~~~w~~~~~~~~~~  253 (356)
                      ..+++.|++.|++.+...+....++.|++|. +.|+...+.... ...+|..+++.+++.+...  .+ |++.+.+....
T Consensus        95 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  173 (338)
T COG0477          95 ALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWG-WRAAFLLAALL  173 (338)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHH
Confidence            8888999999999999999999999999998 678888888777 5777888888776655543  34 88866665555


Q ss_pred             HHH
Q 018408          254 GFI  256 (356)
Q Consensus       254 ~~~  256 (356)
                      ...
T Consensus       174 ~~~  176 (338)
T COG0477         174 GLL  176 (338)
T ss_pred             HHH
Confidence            433

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.91  E-value=4.9e-07  Score=84.71  Aligned_cols=146  Identities=18%  Similarity=0.114  Sum_probs=102.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHh-HHHHHHHHHHHHHh-h-hHHHHHHHHHHHHhhhhhhhhHHHH
Q 018408          124 ILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQID-TIPLILGAIISAQA-H-SLDEMLWGRFLVGLGIGVNTVLVPI  200 (356)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~-~~~~~i~~~~~~~~-~-~~~~~~~~~~l~G~~~g~~~~~~~~  200 (356)
                      +..++..++..+..++..++.|.++|+-|+||.++.. ..+..+++.++.+. + +++...+..++..++.+.......+
T Consensus        70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna  149 (477)
T PF11700_consen   70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNA  149 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456777888888889999999999999888776664 44555556666554 3 4544555566666788888888999


Q ss_pred             HHHhhcCCCcc--------------------------chhHHHhHHHHHHHHHHHHHhhhccCCCCc-------hhHHHH
Q 018408          201 YISEVAPTKYR--------------------------GSLGTLCQVGTCLGIITSLFLGIPAEDDPH-------WWRTML  247 (356)
Q Consensus       201 ~~~e~~p~~~r--------------------------~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~-------~w~~~~  247 (356)
                      ++.|+.+++.+                          ++..+.-.....+|+++.-.+.-.+....+       +.|..+
T Consensus       150 ~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~  229 (477)
T PF11700_consen  150 YLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAF  229 (477)
T ss_pred             HhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHH
Confidence            99999999888                          888888777788888777766444322111       147777


Q ss_pred             HHhHHHHHHH-HHHhhcccCChH
Q 018408          248 YIASLPGFIL-ALGMQFTVESPR  269 (356)
Q Consensus       248 ~~~~~~~~~~-~~~~~~~~e~p~  269 (356)
                      .+.++.-++. +...+++|+.|+
T Consensus       230 ~~~a~ww~vfsiP~~~~~~~~~~  252 (477)
T PF11700_consen  230 LIVALWWLVFSIPLFLWLPDRPG  252 (477)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCC
Confidence            7766665444 445666787753

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.89  E-value=9.8e-09  Score=93.70  Aligned_cols=165  Identities=18%  Similarity=0.089  Sum_probs=135.5

Q ss_pred             HHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhh
Q 018408           96 NFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAH  175 (356)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~  175 (356)
                      .++.|...+.....+=+-.++.|-  .+...|........|-++.-++.+++..|+|+-+++.+++.+.++=.+...+..
T Consensus       380 av~mG~g~~lv~tFLfWHled~~~--~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~  457 (618)
T KOG3762|consen  380 AVVMGAGVGLVFTFLFWHLEDLGG--IKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQ  457 (618)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCC--cceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhc
Confidence            334444444444444445677764  455577777777788888899999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHh-HHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHH
Q 018408          176 SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLC-QVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPG  254 (356)
Q Consensus       176 ~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~-~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~  254 (356)
                      |.|..+..-+++|+..+..+....+|++...|++.|+++.++. .....+|-.+|.+|++.+....+ -+..|.+.++.+
T Consensus       458 n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg-~~ttf~~~giAc  536 (618)
T KOG3762|consen  458 NPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFG-ARTTFRIFGIAC  536 (618)
T ss_pred             CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeeh-hHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999986 46778888999999999998887 788888877777


Q ss_pred             HHHHHHhhc
Q 018408          255 FILALGMQF  263 (356)
Q Consensus       255 ~~~~~~~~~  263 (356)
                      ++.++....
T Consensus       537 l~~l~~~~~  545 (618)
T KOG3762|consen  537 LVTLALFIS  545 (618)
T ss_pred             HHHHHHHHH
Confidence            766554433

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.86  E-value=6.1e-08  Score=88.83  Aligned_cols=141  Identities=18%  Similarity=0.177  Sum_probs=101.5

Q ss_pred             HHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhh
Q 018408           96 NFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAH  175 (356)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~  175 (356)
                      .++........+....++.+ +.++.++....+.......+.+++.++..++.+|+|+|+++.++.++.+++.++..+.+
T Consensus       245 ~l~~~~~~~i~~s~~~yy~~-y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~  323 (467)
T COG2211         245 NLLLFIAFNIRGSIMVYYVT-YVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTP  323 (467)
T ss_pred             HHHHHHHHHHHhhhhheeEE-EEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhc
Confidence            33333333334444444333 34444666666777777777788899999999999999999999999999999888876


Q ss_pred             --hHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCC-----Ccc--chhHHHhHHHHHHHHHHHHHhhhccC
Q 018408          176 --SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPT-----KYR--GSLGTLCQVGTCLGIITSLFLGIPAE  237 (356)
Q Consensus       176 --~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~-----~~r--~~~~~~~~~~~~~g~~~~~~i~~~l~  237 (356)
                        +...+++..++.+++.+...+..+++++|...-     ..|  |...+...+..=+|.+++..+.++..
T Consensus       324 ~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L  394 (467)
T COG2211         324 AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWIL  394 (467)
T ss_pred             CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              677788888999999999999999999887642     223  55666666666667666665555433

>PRK09848 glucuronide transporter; Provisional

Probab=98.85  E-value=1.9e-07  Score=87.68  Aligned_cols=124  Identities=15%  Similarity=0.196  Sum_probs=83.1

Q ss_pred             HHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhh----chhHHH-HHhHHHHHHHHHHHHHhh-----h--HH
Q 018408          111 VSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKL----GCRRTF-QIDTIPLILGAIISAQAH-----S--LD  178 (356)
Q Consensus       111 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~----Grr~~~-~~~~~~~~i~~~~~~~~~-----~--~~  178 (356)
                      .++.+.+|+  +..+.|.+.+...+..++..++.|+++||.    |||+.+ .++.+...+..++....+     +  ..
T Consensus        33 ~y~~~~~gl--~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (448)
T PRK09848         33 SYYTDVAGV--GAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVV  110 (448)
T ss_pred             HHHHHHcCC--CHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHH
Confidence            466777788  677899999999999999999999999996    777755 445554444444332111     1  22


Q ss_pred             HHHHHHHHHHhhhhhhhhHHHHHHHhhcCC-CccchhHHHhHHH-----HHHHHHHHHHhhhcc
Q 018408          179 EMLWGRFLVGLGIGVNTVLVPIYISEVAPT-KYRGSLGTLCQVG-----TCLGIITSLFLGIPA  236 (356)
Q Consensus       179 ~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~-~~r~~~~~~~~~~-----~~~g~~~~~~i~~~l  236 (356)
                      .+++..++.+++.+...+...++..++... ++|.+..++-..+     ..++..++|.+.+..
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~  174 (448)
T PRK09848        111 YAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSS  174 (448)
T ss_pred             HHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            233445667777877777777777777754 6688776654433     335566667666543

>PRK11462 putative transporter; Provisional

Probab=98.84  E-value=1.5e-07  Score=88.40  Aligned_cols=112  Identities=15%  Similarity=-0.018  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhh--hHHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 018408          126 EGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAH--SLDEMLWGRFLVGLGIGVNTVLVPIYIS  203 (356)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~l~G~~~g~~~~~~~~~~~  203 (356)
                      .+.+...+.++.+++.+++++++||+|+|+.+..+..+.++..++..+.+  +...+++.-++.|++.+...+....+++
T Consensus       265 ~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~a  344 (460)
T PRK11462        265 FVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMS  344 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667778888899999999999999999987765554444343333332  2223444556678877777777777777


Q ss_pred             hhcCC-----Ccc--chhHHHhHHHHHHHHHHHHHhhhccC
Q 018408          204 EVAPT-----KYR--GSLGTLCQVGTCLGIITSLFLGIPAE  237 (356)
Q Consensus       204 e~~p~-----~~r--~~~~~~~~~~~~~g~~~~~~i~~~l~  237 (356)
                      |..+.     .+|  |...+......-+|..+++.+++.+.
T Consensus       345 d~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL  385 (460)
T PRK11462        345 DTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWML  385 (460)
T ss_pred             HhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77652     234  44445555666666666666555443

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.84  E-value=3e-07  Score=84.71  Aligned_cols=126  Identities=17%  Similarity=0.091  Sum_probs=91.6

Q ss_pred             HHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHH-HHHHHHHHHH--hhhHHHHHHHHHHHH
Q 018408          112 SIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIP-LILGAIISAQ--AHSLDEMLWGRFLVG  188 (356)
Q Consensus       112 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~-~~i~~~~~~~--~~~~~~~~~~~~l~G  188 (356)
                      .+.+.+|.  +..+.+++.....++..++.++.+++.||+|++......... ..+.......  ..+.+.++++.++.|
T Consensus       233 ~~~~~~g~--~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (394)
T PRK11652        233 LMGAVLGL--SSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFF  310 (394)
T ss_pred             HHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence            34445787  566688888888888889999999999999844333222222 2222122222  234566677788899


Q ss_pred             hhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCC
Q 018408          189 LGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP  240 (356)
Q Consensus       189 ~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~  240 (356)
                      ++.+...+....+..|.+| +++|...++.+....+|..+++.+++.+....
T Consensus       311 ~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~  361 (394)
T PRK11652        311 FGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQTG  361 (394)
T ss_pred             HHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence            9999999999999999887 57899999999999999999999998876553

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.83  E-value=2.8e-07  Score=86.94  Aligned_cols=135  Identities=14%  Similarity=0.050  Sum_probs=104.2

Q ss_pred             HHHHHHHHHHHHHHHHHhHHhhhhhhch-----hHHH--HHhHHHHHHHHHHHHH---------hhhHHHHHHHHHHHHh
Q 018408          126 EGLVVSIFIAGAFVGSISSGSLADKLGC-----RRTF--QIDTIPLILGAIISAQ---------AHSLDEMLWGRFLVGL  189 (356)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~g~l~dr~Gr-----r~~~--~~~~~~~~i~~~~~~~---------~~~~~~~~~~~~l~G~  189 (356)
                      .+++.++..+.-++.+++..++..+.+|     +...  .+|.++.+++.+..++         ..|++.+++..++.++
T Consensus       314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~  393 (475)
T TIGR00924       314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL  393 (475)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence            5677777776667776665543334433     3333  6788888888777664         3588889999999999


Q ss_pred             hhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHHHHHHHh
Q 018408          190 GIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGM  261 (356)
Q Consensus       190 ~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~  261 (356)
                      +.....+....++.+..|++.||+++|++.....+|..+++.+.....+..+ |.+.|...++..++..++.
T Consensus       394 ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  464 (475)
T TIGR00924       394 GELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQG-VTGVFGKIGLVTLLVGVVM  464 (475)
T ss_pred             HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-hhhHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998887766655 7777777666655554443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.83  E-value=8.5e-08  Score=89.30  Aligned_cols=171  Identities=15%  Similarity=0.073  Sum_probs=117.3

Q ss_pred             HHHHHHHHHHHHHHhhhhcchhhHHHHH-HHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhch---------hHH
Q 018408           87 PHVLIASMSNFLFGYHIGVMNGPIVSIA-KELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGC---------RRT  156 (356)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr---------r~~  156 (356)
                      ..++.+.++.+...+....+...+|.+. +-+|+  +-.+.|++.++..+.+.+..+++|.++||.-+         |..
T Consensus       258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f--~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkif  335 (466)
T KOG2532|consen  258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGF--DVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIF  335 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCC--ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHH
Confidence            3467777778888887777777777555 45788  44559999999999999999999999998744         333


Q ss_pred             HHHhHHHHHHHHHHHHHhhh--H-HHH---HHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHH
Q 018408          157 FQIDTIPLILGAIISAQAHS--L-DEM---LWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSL  230 (356)
Q Consensus       157 ~~~~~~~~~i~~~~~~~~~~--~-~~~---~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~  230 (356)
                      -.++....+++.+..++.++  . ..+   .+...+.|+..++.    +.-..+. .+++-+..+|+.+....+.++++|
T Consensus       336 n~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf----~~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P  410 (466)
T KOG2532|consen  336 NTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGF----YKNHQDI-APQHAGFVMGIINFVGALAGFIAP  410 (466)
T ss_pred             HhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhh----Hhhhhhc-cchHHHHHHHHHHHHHHHHHHHHH
Confidence            34455566666666666552  1 111   11222233333322    2222222 457789999999999999999999


Q ss_pred             HhhhccCCCC--chhHHHHHHhHHHHHHHHHHhhcc
Q 018408          231 FLGIPAEDDP--HWWRTMLYIASLPGFILALGMQFT  264 (356)
Q Consensus       231 ~i~~~l~~~~--~~w~~~~~~~~~~~~~~~~~~~~~  264 (356)
                      .+.+.+....  ..|+++|++.+++.++..+.+.++
T Consensus       411 ~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f  446 (466)
T KOG2532|consen  411 LLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF  446 (466)
T ss_pred             HheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence            9999998522  249999999988888776554443

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.76  E-value=4e-08  Score=89.40  Aligned_cols=111  Identities=15%  Similarity=0.171  Sum_probs=82.5

Q ss_pred             HHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHh--h--hHHHHHHHHHHH
Q 018408          112 SIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQA--H--SLDEMLWGRFLV  187 (356)
Q Consensus       112 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~--~--~~~~~~~~~~l~  187 (356)
                      ++.+.+|.  +..+.+++.+...++..++.+++|+++||+|||+.+..+..+..++..+..+.  .  +...+++...+.
T Consensus       251 ~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (366)
T TIGR00886       251 FFKDQFGL--SKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVAL  328 (366)
T ss_pred             HHHHHcCC--cHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Confidence            44566787  55668888888888999999999999999999988877776666665555432  2  455555555566


Q ss_pred             HhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHH
Q 018408          188 GLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLG  225 (356)
Q Consensus       188 G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g  225 (356)
                      +++.|...+....++++.+| +++|..+|+.+....+|
T Consensus       329 ~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       329 FFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             HHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence            66666666667778888887 68999999988776654

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.76  E-value=6.9e-07  Score=84.85  Aligned_cols=133  Identities=11%  Similarity=0.073  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHHHHHHHHhH----HhhhhhhchhHHHHHhHHHHHHHHHHHHHhhh---------HHHHHHHHHHHHhhhh
Q 018408          126 EGLVVSIFIAGAFVGSISS----GSLADKLGCRRTFQIDTIPLILGAIISAQAHS---------LDEMLWGRFLVGLGIG  192 (356)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~----g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~---------~~~~~~~~~l~G~~~g  192 (356)
                      .+++.++..+...+..++.    +++.+|++..+.+.+++++.+++.++.+...+         .+.+++..++.|++..
T Consensus       318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~  397 (500)
T PRK09584        318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL  397 (500)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence            4555665555555555555    66666666778888999999999888776654         4578888999999999


Q ss_pred             hhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccC-----CC----CchhHHHHHHhHHHHHHHH
Q 018408          193 VNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAE-----DD----PHWWRTMLYIASLPGFILA  258 (356)
Q Consensus       193 ~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~-----~~----~~~w~~~~~~~~~~~~~~~  258 (356)
                      ...|....++.+..|++.||+.+|++.+...+|..++..+.....     ..    .++..+.|...++..++..
T Consensus       398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a  472 (500)
T PRK09584        398 MISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIA  472 (500)
T ss_pred             HHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998888888888877764221     10    1125667776666555443

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.73  E-value=3.2e-08  Score=87.24  Aligned_cols=170  Identities=14%  Similarity=0.081  Sum_probs=127.1

Q ss_pred             HHHHHHHHHHHHhhhhcchhhHHH-HHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhc--hhHHHHHhHHHHH
Q 018408           89 VLIASMSNFLFGYHIGVMNGPIVS-IAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLG--CRRTFQIDTIPLI  165 (356)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G--rr~~~~~~~~~~~  165 (356)
                      +..+.......+......-+.++. +.+++..  ...+.|...--..+.+.++..+.|.++||++  |...-..+++..+
T Consensus       272 I~~~agai~~~n~~lafLePtlslwm~e~m~~--p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G  349 (464)
T KOG3764|consen  272 ILLIAGAITFSNSSLAFLEPTLSLWMLETMFT--PGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVG  349 (464)
T ss_pred             HhhhhcchhhccchHHHhCcccHHHHHHhccC--CCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHH
Confidence            444444444444555555665554 4555553  3335666666677889999999999999999  6555555777777


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCC------ccchhHHHhHHHHHHHHHHHHHhhhccCCC
Q 018408          166 LGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTK------YRGSLGTLCQVGTCLGIITSLFLGIPAEDD  239 (356)
Q Consensus       166 i~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~------~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~  239 (356)
                      +++.+..+++++..+++-++..|++.+...+.....+.+....+      ..|...++...++.+|.++||.+++.+.+.
T Consensus       350 ~~~~~iP~~~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~  429 (464)
T KOG3764|consen  350 VSSGPIPFATSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEA  429 (464)
T ss_pred             HHhchhHhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheee
Confidence            77778889999999999999999998888777766666666532      457788889999999999999999999999


Q ss_pred             CchhHHHHHHhHHHHHHHHHHh
Q 018408          240 PHWWRTMLYIASLPGFILALGM  261 (356)
Q Consensus       240 ~~~w~~~~~~~~~~~~~~~~~~  261 (356)
                      .| ++|.-.+.++..++-..+.
T Consensus       430 iG-F~wl~~iig~~n~iyapvl  450 (464)
T KOG3764|consen  430 IG-FEWLMTIIGILNLIYAPVL  450 (464)
T ss_pred             hh-HHHHHHHHHHHHHHHHHHH
Confidence            88 9998888777766655433

>TIGR01272 gluP glucose/galactose transporter

Probab=98.71  E-value=1e-07  Score=84.75  Aligned_cols=147  Identities=18%  Similarity=0.091  Sum_probs=106.3

Q ss_pred             HHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCC-----------
Q 018408          172 AQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP-----------  240 (356)
Q Consensus       172 ~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~-----------  240 (356)
                      +...++..++++-++.|.|.+...+..+.++++..|++++++.+++.+.++.+|..++|.+++.+....           
T Consensus         5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~   84 (310)
T TIGR01272         5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA   84 (310)
T ss_pred             HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence            356789999999999999999999999999999999999999999999999999999999999766321           


Q ss_pred             ----chhHHHHHHhHHHHHHHHHHhhcc--cCChHHHHhcCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCccc
Q 018408          241 ----HWWRTMLYIASLPGFILALGMQFT--VESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQ  314 (356)
Q Consensus       241 ----~~w~~~~~~~~~~~~~~~~~~~~~--~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (356)
                          .+|++.|++.+.+.++..+.+.+.  ||.+     .   ++             .+ +.      .+++.    ..
T Consensus        85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~-----~---~~-------------~~-~~------~~~~~----~~  132 (310)
T TIGR01272        85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQ-----E---AD-------------VA-RV------SSGDT----TQ  132 (310)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCC-----c---cc-------------cc-cc------ccccc----cc
Confidence                248998886655544444444343  4431     0   00             00 00      00000    11


Q ss_pred             hhhhcccCcchhhHHHHHHHHHHHHHHHHHHHhhhh
Q 018408          315 WSELLEEPHSRVAFIGDGALASLLVGVTNFAGLRSE  350 (356)
Q Consensus       315 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (356)
                      .+.++++|.++...++...+.+...++..|...++.
T Consensus       133 ~~~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~  168 (310)
T TIGR01272       133 KTSAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLS  168 (310)
T ss_pred             hhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            224567788887777778888889998888888774

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.69  E-value=6.3e-07  Score=86.92  Aligned_cols=151  Identities=15%  Similarity=0.151  Sum_probs=114.2

Q ss_pred             HHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhh-hchhHHHHHhHHHHHHHHHHHHHhh--------hHHHH
Q 018408          110 IVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADK-LGCRRTFQIDTIPLILGAIISAQAH--------SLDEM  180 (356)
Q Consensus       110 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~i~~~~~~~~~--------~~~~~  180 (356)
                      ..++.+.+|+  +...+..+...+....-+..+++|+++|+ +||++.+.++.++..++..+.++..        .....
T Consensus        11 vlYl~~~lg~--~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~   88 (654)
T TIGR00926        11 VLYFLNFLGF--SESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLD   88 (654)
T ss_pred             HHHHHHHcCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHH
Confidence            3456667787  44445556666666667788899999997 5999999999999999988876642        12335


Q ss_pred             HHHHHHHHhhhhhhhhHHHHHHHhhcCCCc---cchhHHHhHHHHHHHHHHHHHhhhccCCCC------chhHHHHHHhH
Q 018408          181 LWGRFLVGLGIGVNTVLVPIYISEVAPTKY---RGSLGTLCQVGTCLGIITSLFLGIPAEDDP------HWWRTMLYIAS  251 (356)
Q Consensus       181 ~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~---r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~------~~w~~~~~~~~  251 (356)
                      +++..+.++|.|++-+...+...|.++.++   |-.+..++..+.++|+++++.+.+++.+..      .+|...|.+.+
T Consensus        89 l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~  168 (654)
T TIGR00926        89 LLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPA  168 (654)
T ss_pred             HHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHH
Confidence            567788889999999999999999997543   556777788899999999998888776332      13888999888


Q ss_pred             HHHHHHHHHhh
Q 018408          252 LPGFILALGMQ  262 (356)
Q Consensus       252 ~~~~~~~~~~~  262 (356)
                      +..++++++..
T Consensus       169 i~m~ia~lvf~  179 (654)
T TIGR00926       169 ILMILALIVFM  179 (654)
T ss_pred             HHHHHHHHHHH
Confidence            88777765543

>TIGR00788 fbt folate/biopterin transporter

Probab=98.68  E-value=1.3e-07  Score=89.05  Aligned_cols=150  Identities=15%  Similarity=0.097  Sum_probs=114.3

Q ss_pred             HHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHh----------hhHHHHHHHH
Q 018408          115 KELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQA----------HSLDEMLWGR  184 (356)
Q Consensus       115 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~----------~~~~~~~~~~  184 (356)
                      +.+|+  ++.+.|.+.....++.+++..+.+++.+|++.|+++.++.++.+++.+.....          ++.+.++...
T Consensus       281 ~~lG~--s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~  358 (468)
T TIGR00788       281 QCLPG--GPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDS  358 (468)
T ss_pred             ccCCC--CcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehh
Confidence            45677  56668999999999999999999999999999999999999988877554311          2333444556


Q ss_pred             HHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCc------hhHHHH-HHhHHHHHHH
Q 018408          185 FLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPH------WWRTML-YIASLPGFIL  257 (356)
Q Consensus       185 ~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~------~w~~~~-~~~~~~~~~~  257 (356)
                      ++.+++.+........++.+..|++.+|+..++.+...++|..+++.+++.+.++.|      +..+.. .++.+..++.
T Consensus       359 ~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~  438 (468)
T TIGR00788       359 IIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLP  438 (468)
T ss_pred             HHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHH
Confidence            788888888888899999999999999999999999999999999988887766433      122222 2344444545


Q ss_pred             HHHhhcccC
Q 018408          258 ALGMQFTVE  266 (356)
Q Consensus       258 ~~~~~~~~e  266 (356)
                      +....++|+
T Consensus       439 l~~~~llP~  447 (468)
T TIGR00788       439 LPLLHLLPR  447 (468)
T ss_pred             HHHHHhCCC
Confidence            555556785

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=98.67  E-value=6.7e-07  Score=80.79  Aligned_cols=158  Identities=15%  Similarity=0.123  Sum_probs=115.4

Q ss_pred             HHHHHHH-hCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 018408          110 IVSIAKE-LGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVG  188 (356)
Q Consensus       110 ~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~G  188 (356)
                      .|++.+. .|++..+. ..-+.-...-.+....++...+.|.+|.|++++++.+...+...+..+.++...+-+..++.|
T Consensus        27 ~~yL~~~~kn~T~~qv-~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg  105 (412)
T PF01770_consen   27 TPYLTGPDKNFTEEQV-NNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYG  105 (412)
T ss_pred             hHHHcCCccCCCHHHH-HHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHH
Confidence            3566554 67742221 122223334456778888999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCC-chhHHHHHHhHHHHHHHHHHhhcccCC
Q 018408          189 LGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP-HWWRTMLYIASLPGFILALGMQFTVES  267 (356)
Q Consensus       189 ~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~e~  267 (356)
                      ++.+. ....++|+--..|+++--++.+....+..+|-.++..++-.+.... .++....++......++.+..+++|..
T Consensus       106 ~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~  184 (412)
T PF01770_consen  106 LATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMP  184 (412)
T ss_pred             HHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            98866 4666778877788887778888877777777666666665555422 227777777777777777777888876


Q ss_pred             hH
Q 018408          268 PR  269 (356)
Q Consensus       268 p~  269 (356)
                      ++
T Consensus       185 ~~  186 (412)
T PF01770_consen  185 KR  186 (412)
T ss_pred             Cc
Confidence            53

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.67  E-value=5.7e-07  Score=83.53  Aligned_cols=169  Identities=21%  Similarity=0.181  Sum_probs=119.5

Q ss_pred             HHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHH----HHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHH
Q 018408           93 SMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSI----FIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA  168 (356)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~  168 (356)
                      .+-.+..+..........+.....++.+.... .+.....    ..+...+.++..|.++||+|||..+.+..+...+..
T Consensus        28 fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~-~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~  106 (463)
T KOG2816|consen   28 FLYMFSWGLSSTVMTNVILYLACTFGDDYQLE-NGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPA  106 (463)
T ss_pred             HHHHHHHHhcCcchhhhhhhhhcccccCccch-hhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhH
Confidence            33334444444444444455555554432221 2222222    356677888999999999999999999998888888


Q ss_pred             HHHHHhhhHHHHHHHHHHHHhh--hhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHH
Q 018408          169 IISAQAHSLDEMLWGRFLVGLG--IGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTM  246 (356)
Q Consensus       169 ~~~~~~~~~~~~~~~~~l~G~~--~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~  246 (356)
                      ++..+.. ++.++    +.++.  .+...+...++++|....++|....|+.+.....+..++|.+++.+....+ .-.+
T Consensus       107 ~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~-~a~~  180 (463)
T KOG2816|consen  107 LCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLG-IALV  180 (463)
T ss_pred             HHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcC-chHH
Confidence            7776666 33333    33332  344567778899999999999999999999999999999999999988877 7888


Q ss_pred             HHHhHHHHHHHHH-HhhcccCCh
Q 018408          247 LYIASLPGFILAL-GMQFTVESP  268 (356)
Q Consensus       247 ~~~~~~~~~~~~~-~~~~~~e~p  268 (356)
                      |.+.++..++..+ ..+++||+-
T Consensus       181 f~ia~~~~~~~~~y~~~~l~Esl  203 (463)
T KOG2816|consen  181 FLIAAASGILSLLYMLLFLPESL  203 (463)
T ss_pred             HHHHHHHHHHHHHHHhhcccccc
Confidence            8888877777765 456688873

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.67  E-value=3.9e-06  Score=75.14  Aligned_cols=130  Identities=21%  Similarity=0.124  Sum_probs=95.3

Q ss_pred             HHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhc-----hhHHHHH-hHHHHHHHHHHHHHh-----h------
Q 018408          113 IAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLG-----CRRTFQI-DTIPLILGAIISAQA-----H------  175 (356)
Q Consensus       113 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G-----rr~~~~~-~~~~~~i~~~~~~~~-----~------  175 (356)
                      +..|+++  .....+.+.++..+. ....+.+|+.+|+.+     ||..+++ |.++.+.+..+.+++     .      
T Consensus         6 MIvEL~v--pA~lv~~lval~~~~-ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~   82 (403)
T PF03209_consen    6 MIVELGV--PAWLVALLVALHYLV-APLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSS   82 (403)
T ss_pred             HHHHhcc--HHHHHHHHHHHHHHH-HHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccc
Confidence            4567777  444456655555443 346889999999998     8876666 566655555544432     2      


Q ss_pred             --hHH---HHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHH
Q 018408          176 --SLD---EMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRT  245 (356)
Q Consensus       176 --~~~---~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~  245 (356)
                        .+.   ...+..++.|++.+...+...++++|..|+++|++..++......+|.+++..+.+.+.+....-|.
T Consensus        83 ~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL  157 (403)
T PF03209_consen   83 GPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERL  157 (403)
T ss_pred             cccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHH
Confidence              121   2334567789999999999999999999999999999999999999999999999988876653333

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.65  E-value=1e-06  Score=78.31  Aligned_cols=156  Identities=18%  Similarity=0.140  Sum_probs=120.8

Q ss_pred             HHHHHHHHHHHHHHhhhhcchhhHHHHHHH-hCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHH
Q 018408           87 PHVLIASMSNFLFGYHIGVMNGPIVSIAKE-LGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLI  165 (356)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~  165 (356)
                      +.+....++.|++.-.....+.+++.+.++ .|.  +..+.+...+.+..+.++|.+++.++..|+...+.+.+..++..
T Consensus       236 ~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~--~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~i  313 (422)
T COG0738         236 KHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGL--NEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAI  313 (422)
T ss_pred             hHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence            445555556666555555666777767666 566  67778999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHH
Q 018408          166 LGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRT  245 (356)
Q Consensus       166 i~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~  245 (356)
                      +.++..+++++...+ .+-++.|++.+..+|...+...+..| ++ ....|..-....+|+++.|.+.|++.|+.+ -..
T Consensus       314 ll~~~~~l~~g~v~~-~~l~~ig~F~simfPTIfslal~~l~-~~-ts~~s~~l~maivGGAiiP~l~G~i~d~~g-~~~  389 (422)
T COG0738         314 LLLLAVALIGGVVAL-YALFLIGLFNSIMFPTIFSLALKNLG-EH-TSVGSGLLVMAIVGGAIIPPLQGVIADMFG-IQL  389 (422)
T ss_pred             HHHHHHHHhcChHHH-HHHHHHHHHhHHHHHHHHHHHHhccC-cc-ccccceeeeeheecchHHHHHHHHHHHhhh-hHH
Confidence            888888888885544 35677899999999999999999998 33 334444455667789999999999999887 444


Q ss_pred             HHH
Q 018408          246 MLY  248 (356)
Q Consensus       246 ~~~  248 (356)
                      .+.
T Consensus       390 ~~~  392 (422)
T COG0738         390 TFL  392 (422)
T ss_pred             HHH
Confidence            444

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.65  E-value=2.3e-08  Score=84.19  Aligned_cols=153  Identities=22%  Similarity=0.141  Sum_probs=114.5

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhh-hchhHHHHHhHH
Q 018408           84 PAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADK-LGCRRTFQIDTI  162 (356)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~  162 (356)
                      ++...+..+++..|...+...........+..+.++  +.++..++-++|..-.++-++++|++.|| +|-|..-++-+.
T Consensus        41 hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni--~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~  118 (459)
T KOG4686|consen   41 HRFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNI--EYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCI  118 (459)
T ss_pred             hHHHHHHHHHHhcccceeecCCchhhhhhhhccccc--ceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHH
Confidence            344445555555555555555555555666666666  44446677888888888999999999997 687777666666


Q ss_pred             HHHHHHHHHH---HhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCC
Q 018408          163 PLILGAIISA---QAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAED  238 (356)
Q Consensus       163 ~~~i~~~~~~---~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~  238 (356)
                      ...++.++++   ..+.+|.++.+|++.|+|.-........|..-||..++-+..+|+......+|..+...+.+++.+
T Consensus       119 fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~  197 (459)
T KOG4686|consen  119 FVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYD  197 (459)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHH
Confidence            6677777665   457899999999999999877778888899999999999999999888888887665555554443

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.58  E-value=2.3e-06  Score=78.68  Aligned_cols=160  Identities=19%  Similarity=0.181  Sum_probs=108.4

Q ss_pred             chhhHH-HHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhh----hchhHHHHH-hHHHHHHHHHHHHHhhh---
Q 018408          106 MNGPIV-SIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADK----LGCRRTFQI-DTIPLILGAIISAQAHS---  176 (356)
Q Consensus       106 ~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~Grr~~~~~-~~~~~~i~~~~~~~~~~---  176 (356)
                      ...++. .+.+.+|+  +...+|.+..+.=+--++.-++.|.++||    +||+|.+++ +.+..++.+.++-.+++   
T Consensus        31 ~~~yLl~fYTdv~Gi--s~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~  108 (467)
T COG2211          31 VVLYLLFFYTDVFGL--SAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSM  108 (467)
T ss_pred             HHHHHHHHHhcccCC--cHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCccc
Confidence            333343 44566788  66667777776666677888999999996    788766555 66888888887776663   


Q ss_pred             ---HHHHHHHHHHHHhhhhhhhhHHHHHHHhhcC-CCccchhHHHhHHHHHHHHHHHHHhhhccCC----CC--chhHHH
Q 018408          177 ---LDEMLWGRFLVGLGIGVNTVLVPIYISEVAP-TKYRGSLGTLCQVGTCLGIITSLFLGIPAED----DP--HWWRTM  246 (356)
Q Consensus       177 ---~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p-~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~----~~--~~w~~~  246 (356)
                         ..-.++.-.+.+++.........++.+|+.+ +++|.+..+.-+.+..+|.++...+.+.+..    ..  .+|+..
T Consensus       109 ~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~  188 (467)
T COG2211         109 TGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGT  188 (467)
T ss_pred             CcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHH
Confidence               3334455778889999888888889999986 5889999999888888886665554443332    21  126666


Q ss_pred             HHHhHHHHHHHHHHhhc-ccCC
Q 018408          247 LYIASLPGFILALGMQF-TVES  267 (356)
Q Consensus       247 ~~~~~~~~~~~~~~~~~-~~e~  267 (356)
                      ..+.+++.++..+..++ .+|.
T Consensus       189 ~~~~~vi~~i~~l~~~~~v~ER  210 (467)
T COG2211         189 ALVLGVIGVILLLFCFFNVKER  210 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcc
Confidence            66655555555443333 4444

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.56  E-value=2.8e-06  Score=80.79  Aligned_cols=145  Identities=15%  Similarity=0.056  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHH-HhCCCCC-hhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHH-HHhHHHHH
Q 018408           89 VLIASMSNFLFGYHIGVMNGPIVSIAK-ELGFEGN-PILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTF-QIDTIPLI  165 (356)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~-~~~~~~~~  165 (356)
                      +....+..+..++.+.......|.... -++-+.. ....++....+.++..+|.++.|.+..+++|-|.. +++.+++.
T Consensus       312 ~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~t  391 (599)
T PF06609_consen  312 FAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMT  391 (599)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHH
Confidence            344344445555544444444444332 3443221 12367778888888899999999999988876555 45666665


Q ss_pred             HHHHHHHHh--hhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhh
Q 018408          166 LGAIISAQA--HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLG  233 (356)
Q Consensus       166 i~~~~~~~~--~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~  233 (356)
                      ++.-+++..  +|....+..-++.|++.|...........-..|++.-|.+.++......+|+.++..+.
T Consensus       392 a~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy  461 (599)
T PF06609_consen  392 AFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIY  461 (599)
T ss_pred             HHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            554444433  35556667788999999988888877777788999999999998888888877777653

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.55  E-value=4e-06  Score=79.36  Aligned_cols=136  Identities=14%  Similarity=0.061  Sum_probs=100.3

Q ss_pred             HHHHHHHHHHHHHHHHHhHHhhhhhhchhHH-------HHHhHHHHHHHHHHHH-----Hh-----hhHHHHHHHHHHHH
Q 018408          126 EGLVVSIFIAGAFVGSISSGSLADKLGCRRT-------FQIDTIPLILGAIISA-----QA-----HSLDEMLWGRFLVG  188 (356)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~-------~~~~~~~~~i~~~~~~-----~~-----~~~~~~~~~~~l~G  188 (356)
                      .+++.++..+..++..++.+++.||+|+|+.       +.+|+++.+++.+..+     +.     .+.+.++...++.|
T Consensus       311 ~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g  390 (489)
T PRK10207        311 PVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQS  390 (489)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHH
Confidence            3556666666777888889999999999973       6677777776664331     21     24667777889999


Q ss_pred             hhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCC---------CCchhHHHHHHhHHHHHHHHH
Q 018408          189 LGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAED---------DPHWWRTMLYIASLPGFILAL  259 (356)
Q Consensus       189 ~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~---------~~~~w~~~~~~~~~~~~~~~~  259 (356)
                      ++.+...+....++.+..|++.+|.++|++.+...+|..++..++.....         ..+.+.+.|...++..++..+
T Consensus       391 ~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v  470 (489)
T PRK10207        391 LGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAV  470 (489)
T ss_pred             HHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999888887754421         011145666666655555544


Q ss_pred             Hh
Q 018408          260 GM  261 (356)
Q Consensus       260 ~~  261 (356)
                      +.
T Consensus       471 ~~  472 (489)
T PRK10207        471 VM  472 (489)
T ss_pred             HH
Confidence            43

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.52  E-value=7.6e-06  Score=64.23  Aligned_cols=107  Identities=10%  Similarity=0.059  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCC
Q 018408          129 VVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPT  208 (356)
Q Consensus       129 ~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~  208 (356)
                      -.++......+++++.+.+.+++|.|+.++++.++..+..... +-++.+.++.+-.+.|++.+..++....++.+...+
T Consensus        42 slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~  120 (156)
T PF05978_consen   42 SLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTE  120 (156)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCH
Confidence            3455566678888999999999999999999998888665554 456778888999999999999999999999999999


Q ss_pred             CccchhHHHhHHHHHHHHHHHHHhhhcc
Q 018408          209 KYRGSLGTLCQVGTCLGIITSLFLGIPA  236 (356)
Q Consensus       209 ~~r~~~~~~~~~~~~~g~~~~~~i~~~l  236 (356)
                      +.|++..+++-.....+.++|.++...+
T Consensus       121 ~~~~~~~~ifw~i~~~s~i~G~~~~~~~  148 (156)
T PF05978_consen  121 ETIGRNTGIFWAIFQSSLIFGNLFLFFI  148 (156)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999987777777777776654433

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.49  E-value=9.4e-06  Score=77.74  Aligned_cols=138  Identities=15%  Similarity=0.083  Sum_probs=101.1

Q ss_pred             HHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhhhHH---HHHHHHHHHHhhhhhhhhHHHHHHHhhc
Q 018408          130 VSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLD---EMLWGRFLVGLGIGVNTVLVPIYISEVA  206 (356)
Q Consensus       130 ~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~l~G~~~g~~~~~~~~~~~e~~  206 (356)
                      ..........+....+.+.|++|||.....+.++..++.++.++.....   ...+...+..++.+..+.....+.+|++
T Consensus       356 ~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~  435 (521)
T KOG0255|consen  356 FTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELI  435 (521)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3334445556666778999999999999999999999999998876443   3555566666667777777789999999


Q ss_pred             CCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHHHHHHHhhcccCCh
Q 018408          207 PTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESP  268 (356)
Q Consensus       207 p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~p  268 (356)
                      |+..|+.+.+..+....+|.+++|.+..........+.... +.....+.+.+..+++||+.
T Consensus       436 pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~lpet~  496 (521)
T KOG0255|consen  436 PTVVRNTAVGAISAAARLGSILAPLFPLLLRQMFPLLGLIL-FGWLALLLGLLSLLLLPETK  496 (521)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHH-HHHHHHHHHHHHHhcCcccC
Confidence            99999999999999999999999998765544221122222 23344444445558899984

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.49  E-value=3.5e-06  Score=78.72  Aligned_cols=140  Identities=11%  Similarity=0.023  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHHHHHHhHHhhhhhhch-hHHHHHhHHHHHHHHHHHHHhhh---------------------HHHHHHHHH
Q 018408          128 LVVSIFIAGAFVGSISSGSLADKLGC-RRTFQIDTIPLILGAIISAQAHS---------------------LDEMLWGRF  185 (356)
Q Consensus       128 ~~~~~~~~~~~~~~~~~g~l~dr~Gr-r~~~~~~~~~~~i~~~~~~~~~~---------------------~~~~~~~~~  185 (356)
                      +....+.+...+.+++..++.+++|+ |++..++.++.+++.+...+.++                     .+..++...
T Consensus       309 ~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  388 (477)
T TIGR01301       309 FGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFA  388 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHH
Confidence            33344444455667778889999984 77778898888888877765543                     256677788


Q ss_pred             HHHhhhhhhhhHHHHHHHhhcCC--CccchhHHHhHHHHHHHHHHHHHhhhccCCCCc-hhHHHHHHhHHHHHHHHHHhh
Q 018408          186 LVGLGIGVNTVLVPIYISEVAPT--KYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPH-WWRTMLYIASLPGFILALGMQ  262 (356)
Q Consensus       186 l~G~~~g~~~~~~~~~~~e~~p~--~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~-~w~~~~~~~~~~~~~~~~~~~  262 (356)
                      +.|+..+..+..-++++++..+.  +..|..+|+.+++..+..++..+..+.+.+..| +-.+.+.++++..+++.+..+
T Consensus       389 ~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~  468 (477)
T TIGR01301       389 ILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLAL  468 (477)
T ss_pred             HhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999995  455999999999999999888877776443332 245677788888888776554


Q ss_pred             -cccCC
Q 018408          263 -FTVES  267 (356)
Q Consensus       263 -~~~e~  267 (356)
                       .+|++
T Consensus       469 ~~~~~~  474 (477)
T TIGR01301       469 ILLPRP  474 (477)
T ss_pred             HhCCCC
Confidence             46665

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.44  E-value=4.4e-05  Score=68.56  Aligned_cols=148  Identities=17%  Similarity=0.133  Sum_probs=115.9

Q ss_pred             HHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhh-hhchhHHHHHhHHHHHHHHHHHHH---hhhHHHHHHHHHH
Q 018408          111 VSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLAD-KLGCRRTFQIDTIPLILGAIISAQ---AHSLDEMLWGRFL  186 (356)
Q Consensus       111 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-r~Grr~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~l  186 (356)
                      |+=-+-||+  +..+...++.....|..+|....|++.. |.++++.-.+++.+.+++..+..+   ..+.+.+...-++
T Consensus       233 Pygg~Vfgm--sv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l  310 (403)
T PF03209_consen  233 PYGGEVFGM--SVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFL  310 (403)
T ss_pred             CchhHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence            455667888  5556778899999999999999998777 678888888888887777766544   3577888889999


Q ss_pred             HHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCC---------CchhHHHHHHhHHHHHHH
Q 018408          187 VGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDD---------PHWWRTMLYIASLPGFIL  257 (356)
Q Consensus       187 ~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~---------~~~w~~~~~~~~~~~~~~  257 (356)
                      .|++.|.........+.++..+++-|..+|.+.....++..++..+++.+.|.         ..+|..+|.+-++..+++
T Consensus       311 ~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a  390 (403)
T PF03209_consen  311 LGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAA  390 (403)
T ss_pred             HHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999988888888888887755542         112666676666655555


Q ss_pred             HHH
Q 018408          258 ALG  260 (356)
Q Consensus       258 ~~~  260 (356)
                      +++
T Consensus       391 ~~l  393 (403)
T PF03209_consen  391 LVL  393 (403)
T ss_pred             HHH
Confidence            443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.43  E-value=2e-06  Score=59.37  Aligned_cols=80  Identities=18%  Similarity=0.154  Sum_probs=71.0

Q ss_pred             HHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhhhHH
Q 018408           99 FGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLD  178 (356)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~  178 (356)
                      .|.....+.+.+|.+.++.++  +..+.+++.+...+||.+|.+...++.++..+++.+..+.+...+..+.+++.++.+
T Consensus         4 mGigRFayTplLP~M~~~~~l--s~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~   81 (85)
T PF06779_consen    4 MGIGRFAYTPLLPLMQADGGL--SLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFW   81 (85)
T ss_pred             hhhHHHHHHhHhHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchH
Confidence            355666788899999999999  677799999999999999999999999998889999999999999999999988766


Q ss_pred             HH
Q 018408          179 EM  180 (356)
Q Consensus       179 ~~  180 (356)
                      .+
T Consensus        82 ~w   83 (85)
T PF06779_consen   82 LW   83 (85)
T ss_pred             HH
Confidence            54

Note that many members are hypothetical proteins.

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=98.42  E-value=7.2e-05  Score=69.67  Aligned_cols=147  Identities=11%  Similarity=-0.037  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHHHHhhhhcchhhHHHHHHHhCCC---CChhHHHHHHHHHHHHHHHH-HHhHHhhhhhhchhHHHHHhHH
Q 018408           87 PHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFE---GNPILEGLVVSIFIAGAFVG-SISSGSLADKLGCRRTFQIDTI  162 (356)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~-~~~~g~l~dr~Grr~~~~~~~~  162 (356)
                      +.++.+.+..|+..+..+    .+-.+.+.+..+   .+.....++-+...+...+. .++.+++++|++|++++.+...
T Consensus         7 ~k~~~~~l~fF~il~~Y~----iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~   82 (472)
T TIGR00769         7 KKFLPLFLMFFCILFNYT----ILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVIS   82 (472)
T ss_pred             HHHHHHHHHHHHHHHHHH----HHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHH
Confidence            344444444444444432    234556666552   12234677777666665555 8899999999999999888766


Q ss_pred             HHHHHHHHHHHh--h--h---------------------------HHHHHHHHHHHHhhhhhhhh-HHHHHHHhhcCCCc
Q 018408          163 PLILGAIISAQA--H--S---------------------------LDEMLWGRFLVGLGIGVNTV-LVPIYISEVAPTKY  210 (356)
Q Consensus       163 ~~~i~~~~~~~~--~--~---------------------------~~~~~~~~~l~G~~~g~~~~-~~~~~~~e~~p~~~  210 (356)
                      .+.....++++.  +  .                           .|...+......+......+ ..+.+++|.+..++
T Consensus        83 ~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~q  162 (472)
T TIGR00769        83 PFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDE  162 (472)
T ss_pred             HHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence            666666555543  0  0                           11111222233333344444 77889999999999


Q ss_pred             cchhHHHhHHHHHHHHHHHHHhhhccC
Q 018408          211 RGSLGTLCQVGTCLGIITSLFLGIPAE  237 (356)
Q Consensus       211 r~~~~~~~~~~~~~g~~~~~~i~~~l~  237 (356)
                      -.+..++...+.++|.++++.+..++.
T Consensus       163 akRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       163 AKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998887765

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.40  E-value=3.3e-05  Score=71.72  Aligned_cols=141  Identities=11%  Similarity=-0.005  Sum_probs=85.0

Q ss_pred             chhhHHHH-HHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHH-----HhhhHHH
Q 018408          106 MNGPIVSI-AKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISA-----QAHSLDE  179 (356)
Q Consensus       106 ~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~-----~~~~~~~  179 (356)
                      +....|.+ .+.+|.  +..+.++.......+..++..+.+.+.++.++++.+.....+..++.++..     ..+++..
T Consensus       237 ~~~~~P~~l~~~~g~--s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~  314 (413)
T PRK15403        237 WVAVSPVILIDAGGM--TTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLW  314 (413)
T ss_pred             HHHhChHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHH
Confidence            33344544 445577  566678877777778888888887766544444443332223233332222     1233434


Q ss_pred             HHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhH
Q 018408          180 MLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIAS  251 (356)
Q Consensus       180 ~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~  251 (356)
                      .+++.++.+++.+...+......- .-....+|++.++.+.....+..+++.+.+++..+..  .+.|...+
T Consensus       315 ~~~~~~l~~~G~~~~~p~~~~~al-~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~  383 (413)
T PRK15403        315 SVLGTSLYAFGIGLIFPTLFRFTL-FSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFNGG--RLPFHLLA  383 (413)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHh-ccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--chHHHHHH
Confidence            566778888888887777664332 1123347999999888888888888888887765533  44444433

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.37  E-value=9.2e-06  Score=75.63  Aligned_cols=155  Identities=17%  Similarity=0.143  Sum_probs=112.9

Q ss_pred             hhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhh-----chhHHHHHhHHHHHHHHHHHHHhh----hHH
Q 018408          108 GPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKL-----GCRRTFQIDTIPLILGAIISAQAH----SLD  178 (356)
Q Consensus       108 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----Grr~~~~~~~~~~~i~~~~~~~~~----~~~  178 (356)
                      ...+.+.+++|+  ++.+...+.+...+.. ...++.|.++|-+     .||..++++.++..++.+..+..+    +..
T Consensus        11 ~~~~~l~~~l~l--s~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~   87 (433)
T PF03092_consen   11 AIYPFLKDDLGL--SPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAA   87 (433)
T ss_pred             HHHHHHHHHcCC--CHHHHHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhh
Confidence            345788899999  5655655555555443 3467899999986     355556667777766665555433    455


Q ss_pred             HHHHHHHHHHhhhhhhhhHHHHHHHhhcC--CCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHHH
Q 018408          179 EMLWGRFLVGLGIGVNTVLVPIYISEVAP--TKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFI  256 (356)
Q Consensus       179 ~~~~~~~l~G~~~g~~~~~~~~~~~e~~p--~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~  256 (356)
                      ...+..++..++........-+++.|...  ++.||...+.......+|.+++..++|.+.+..+ ++..|.+.+++.++
T Consensus        88 ~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~-~~~~f~i~~~~~~l  166 (433)
T PF03092_consen   88 IAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFG-PQGVFLISAALPLL  166 (433)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCC-CeEEehHHHHHHHH
Confidence            66667788888898999999999999884  3337788888888999999999999999988877 88888888777666


Q ss_pred             HHHHhhcccC
Q 018408          257 LALGMQFTVE  266 (356)
Q Consensus       257 ~~~~~~~~~e  266 (356)
                      ..+..+++.|
T Consensus       167 ~~~~~~~~~~  176 (433)
T PF03092_consen  167 MLIVALFLLE  176 (433)
T ss_pred             HHHHHHHhhh
Confidence            6554444433

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PTZ00207 hypothetical protein; Provisional

Probab=98.35  E-value=6.9e-06  Score=78.52  Aligned_cols=160  Identities=14%  Similarity=0.076  Sum_probs=108.9

Q ss_pred             HHHHHHHh-CCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchh---------HHHHHhHHHHHHHHHHHHHhhhHHH
Q 018408          110 IVSIAKEL-GFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCR---------RTFQIDTIPLILGAIISAQAHSLDE  179 (356)
Q Consensus       110 ~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr---------~~~~~~~~~~~i~~~~~~~~~~~~~  179 (356)
                      +..+.+.+ |.+.+......+++++.++..+|.+..|.+....-+|         ..+.+..+ +.++.+++++.-....
T Consensus       376 ~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~~~  454 (591)
T PTZ00207        376 ARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPKAA  454 (591)
T ss_pred             HHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCccH
Confidence            34677777 6632221111267888888888988888877222111         22333333 5555555555544368


Q ss_pred             HHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHH-HHhhhccCCCCc---------h---hHHH
Q 018408          180 MLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITS-LFLGIPAEDDPH---------W---WRTM  246 (356)
Q Consensus       180 ~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~-~~i~~~l~~~~~---------~---w~~~  246 (356)
                      +++.-++.|++.|..+++....++|+|. ++-|+-..+..+...+|..+- ..+.|.+.|+..         +   ++..
T Consensus       455 L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~  533 (591)
T PTZ00207        455 LPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMP  533 (591)
T ss_pred             hHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhH
Confidence            9999999999999999999999999999 888998888888888888776 456666664321         1   7788


Q ss_pred             HHHhHHHHHHHHHHhhc-ccCChHHH
Q 018408          247 LYIASLPGFILALGMQF-TVESPRWL  271 (356)
Q Consensus       247 ~~~~~~~~~~~~~~~~~-~~e~p~~~  271 (356)
                      |++.+.+++++.+.... .-++.+++
T Consensus       534 ~~v~~~~~~~g~~~s~~l~~R~r~~y  559 (591)
T PTZ00207        534 LAFLLGLSFLAFITSTYVHLQYRRLC  559 (591)
T ss_pred             HHHHHHHHHHHHHHHhheeeehHHHH
Confidence            88888888877765433 33554443

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.29  E-value=1.6e-05  Score=74.51  Aligned_cols=160  Identities=16%  Similarity=0.101  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHHHHhhhhcchhhHHHHHHH-hCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhh----hchhHHHHHhHH
Q 018408           88 HVLIASMSNFLFGYHIGVMNGPIVSIAKE-LGFEGNPILEGLVVSIFIAGAFVGSISSGSLADK----LGCRRTFQIDTI  162 (356)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~Grr~~~~~~~~  162 (356)
                      .++..+++.+......+.+..++|.+.++ .|+  +..+.+.+.+.+.++.+++.+++|+++||    ..+|..+.....
T Consensus       274 ~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~--s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~  351 (495)
T KOG2533|consen  274 GVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGY--SELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLC  351 (495)
T ss_pred             hHHHHHHHHHHHhhccccHHHHHHHHHHcCCCc--ChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            35666777777777777778888888877 345  66678899999999999999999999999    667766666555


Q ss_pred             HHHHHH-HHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCcc-chhHHHhHHHHHHHHHHHHHh-hhccCCC
Q 018408          163 PLILGA-IISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYR-GSLGTLCQVGTCLGIITSLFL-GIPAEDD  239 (356)
Q Consensus       163 ~~~i~~-~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r-~~~~~~~~~~~~~g~~~~~~i-~~~l~~~  239 (356)
                      +..+.. +......+......+.+....+.+...+......++....+.| -...+....+.+.++++++.+ .+.....
T Consensus       352 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~  431 (495)
T KOG2533|consen  352 LYAIIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPR  431 (495)
T ss_pred             HHHHHHHHHHHhhccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcc
Confidence            544444 3333333333333333333444555556666666666655444 344445555555555555544 3333333


Q ss_pred             CchhHHHHHHh
Q 018408          240 PHWWRTMLYIA  250 (356)
Q Consensus       240 ~~~w~~~~~~~  250 (356)
                      .. |...|++.
T Consensus       432 y~-~~~~f~~~  441 (495)
T KOG2533|consen  432 YG-WGAVFYML  441 (495)
T ss_pred             hh-hhhHHHHH
Confidence            45 77777443

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.26  E-value=8.6e-06  Score=55.77  Aligned_cols=68  Identities=24%  Similarity=0.307  Sum_probs=55.1

Q ss_pred             HHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHH
Q 018408           94 MSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIP  163 (356)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~  163 (356)
                      ..++......+...+.++.+.++.|+  +..+.|.+.++..+...++.+++|.++||+|+++.++....+
T Consensus         7 ~~yf~~f~~~g~~~Pfl~~~~~~~Gl--~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~   74 (77)
T PF12832_consen    7 AFYFFYFAALGCLYPFLPLYLKQLGL--SPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHHHHHHHHHhhhhHhhhhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence            33444445556667777778888888  788899999999999999999999999999999988766544

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.03  E-value=6.5e-05  Score=66.47  Aligned_cols=123  Identities=11%  Similarity=0.108  Sum_probs=102.9

Q ss_pred             HHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhc--hhHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhh
Q 018408          115 KELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLG--CRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIG  192 (356)
Q Consensus       115 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G--rr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~G~~~g  192 (356)
                      +.+|+  ++.+.|-+.+...+++.+.+....+..||..  -+-.+..++.++.-..++...++....+.++-.+-.+..+
T Consensus       290 ~rfg~--ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A  367 (451)
T KOG2615|consen  290 GRFGY--SSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTA  367 (451)
T ss_pred             CccCC--ChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHH
Confidence            45666  6677888888888888888888888888876  6666666777777667777778888888888888899888


Q ss_pred             hhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCC
Q 018408          193 VNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDD  239 (356)
Q Consensus       193 ~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~  239 (356)
                      ...+....++....|.++||..+|+......++-++||.++|.....
T Consensus       368 ~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~W  414 (451)
T KOG2615|consen  368 SVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSW  414 (451)
T ss_pred             HhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEE
Confidence            88888899999999999999999999999999999999999876653

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.02  E-value=0.00051  Score=61.89  Aligned_cols=144  Identities=18%  Similarity=0.100  Sum_probs=93.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHH-hHHHHHHHHHHHHHhhh---HHHHHHHHHHHHhhhhhhhhHH
Q 018408          123 PILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQI-DTIPLILGAIISAQAHS---LDEMLWGRFLVGLGIGVNTVLV  198 (356)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~-~~~~~~i~~~~~~~~~~---~~~~~~~~~l~G~~~g~~~~~~  198 (356)
                      +...+...++..+...+-.++.|.++|..|+||..+. ...+..++.++..++++   ++..++...+..++........
T Consensus        57 ~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfy  136 (438)
T COG2270          57 TAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFY  136 (438)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheeh
Confidence            3446666777777778889999999999998876655 44555555566666654   3444555677888888888889


Q ss_pred             HHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhh---hccC---------------CCCchhHHHHHHhHHHHHHHHH-
Q 018408          199 PIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLG---IPAE---------------DDPHWWRTMLYIASLPGFILAL-  259 (356)
Q Consensus       199 ~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~---~~l~---------------~~~~~w~~~~~~~~~~~~~~~~-  259 (356)
                      .+++.+..++++-++..++-.....+|+.+.-++.   ....               +... -|..+.++++..++..+ 
T Consensus       137 ds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~ri~~~l~A~W~li~~iP  215 (438)
T COG2270         137 DSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGED-VRITGLLAALWWLLFALP  215 (438)
T ss_pred             hhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCcccccc-chhHHHHHHHHHHHHHhH
Confidence            99999999988777776665444445544443331   0011               2223 67777777666655544 


Q ss_pred             HhhcccCC
Q 018408          260 GMQFTVES  267 (356)
Q Consensus       260 ~~~~~~e~  267 (356)
                      .+++.++.
T Consensus       216 m~~~v~~~  223 (438)
T COG2270         216 MILNVHDA  223 (438)
T ss_pred             HHhccccc
Confidence            44445554

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.95  E-value=0.00077  Score=63.49  Aligned_cols=112  Identities=13%  Similarity=0.066  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHHHHHHhHHhhhhhhch--hH-----HHHHhHHHHHHHHHHHHHh---------hhHHHHHHHHHHHHh
Q 018408          126 EGLVVSIFIAGAFVGSISSGSLADKLGC--RR-----TFQIDTIPLILGAIISAQA---------HSLDEMLWGRFLVGL  189 (356)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~g~l~dr~Gr--r~-----~~~~~~~~~~i~~~~~~~~---------~~~~~~~~~~~l~G~  189 (356)
                      .+|..++..+.-++..++.+++=.|.+|  |.     =+.+|+++.+++.+++.++         .+.+++++..+++++
T Consensus       310 ~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~  389 (493)
T PRK15462        310 TAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGF  389 (493)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHH
Confidence            5677777777777777777777666633  21     1566778878777666432         255678888999999


Q ss_pred             hhhhhhhHHHHHHHhhcCCCccchhHHHhHHH-HHHHHHHHHHhhhccC
Q 018408          190 GIGVNTVLVPIYISEVAPTKYRGSLGTLCQVG-TCLGIITSLFLGIPAE  237 (356)
Q Consensus       190 ~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~-~~~g~~~~~~i~~~l~  237 (356)
                      |.-...|+..++++++.|++.||+.+|.+... ..+|..++..++....
T Consensus       390 gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~  438 (493)
T PRK15462        390 AELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTS  438 (493)
T ss_pred             HHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999998764 4688888777766553

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=97.94  E-value=3.6e-05  Score=69.62  Aligned_cols=136  Identities=12%  Similarity=0.146  Sum_probs=94.2

Q ss_pred             HHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhh----hchhHHHHH-hHHHHHHHHHHHHH
Q 018408           99 FGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADK----LGCRRTFQI-DTIPLILGAIISAQ  173 (356)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~Grr~~~~~-~~~~~~i~~~~~~~  173 (356)
                      .-+....-..+.+.+.+++|.+  ....+.+...--+...+-+++.|..+||    +||||.++. +.++..++.++..+
T Consensus        44 vqf~wA~elsy~tPyl~~lGvp--hk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~  121 (498)
T KOG0637|consen   44 VQFGWALELSYLTPYLQSLGVP--HKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGY  121 (498)
T ss_pred             HHHHHHHHhccccHHHHHcCCC--cccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhh
Confidence            3334344444555667788884  3335555555555667778999999996    799988777 45556666666666


Q ss_pred             hhhH-----------------HHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccch-hHHHhHHHHHHHHHHHHHhhhc
Q 018408          174 AHSL-----------------DEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGS-LGTLCQVGTCLGIITSLFLGIP  235 (356)
Q Consensus       174 ~~~~-----------------~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~-~~~~~~~~~~~g~~~~~~i~~~  235 (356)
                      +..+                 ..++++.-+.=++.......+-+++.|+...+++-+ +++++..+..+|+.+|..++.+
T Consensus       122 aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y  201 (498)
T KOG0637|consen  122 AADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSY  201 (498)
T ss_pred             HhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeecccc
Confidence            5332                 233344444555666788889999999998877777 9999999999999998887764


Q ss_pred             c
Q 018408          236 A  236 (356)
Q Consensus       236 l  236 (356)
                      .
T Consensus       202 ~  202 (498)
T KOG0637|consen  202 L  202 (498)
T ss_pred             c
Confidence            4

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=97.89  E-value=0.00043  Score=61.34  Aligned_cols=147  Identities=14%  Similarity=0.163  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhh-----hhchhHHHHH-
Q 018408           86 FPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLAD-----KLGCRRTFQI-  159 (356)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-----r~Grr~~~~~-  159 (356)
                      ...+..+.+.+..+|.-.+... .+|.+.+.-|.+.+.  .+....++.  -..-.+++.++.|     |+||||..++ 
T Consensus        30 ~~~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~--~a~fS~ay~--P~sLKllWaPiVDs~y~k~~GrrksWvvp  104 (510)
T KOG3574|consen   30 RSSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTS--QAIFSFAYW--PFSLKLLWAPIVDSVYSKRFGRRKSWVVP  104 (510)
T ss_pred             hhhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhh--hhhhhhhhh--HHHHHHHHHhhhHHHHHHhhccccceeee
Confidence            4456677777888888877777 788888876764333  333322221  1233578888999     9999997665 


Q ss_pred             hHHHHHHHHHHHHHh-----------hhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHH
Q 018408          160 DTIPLILGAIISAQA-----------HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIIT  228 (356)
Q Consensus       160 ~~~~~~i~~~~~~~~-----------~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~  228 (356)
                      +..+.+..++..+..           ++...+....++.-+..+.-....-...-.+..+++-|-+......+...|.++
T Consensus       105 ~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL  184 (510)
T KOG3574|consen  105 CQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFL  184 (510)
T ss_pred             hHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHh
Confidence            444444444444432           233334445566667776666666667777788888888888888888888888


Q ss_pred             HHHhhhccC
Q 018408          229 SLFLGIPAE  237 (356)
Q Consensus       229 ~~~i~~~l~  237 (356)
                      +..+.-.+.
T Consensus       185 ~~~ifLaL~  193 (510)
T KOG3574|consen  185 GNVVFLALE  193 (510)
T ss_pred             hcceeeEec
Confidence            876654443

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=97.78  E-value=0.0002  Score=65.51  Aligned_cols=108  Identities=16%  Similarity=0.157  Sum_probs=86.7

Q ss_pred             HHHHHhHHHHHHHHHHHHHh--h-------hHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCC---ccchhHHHhHHHH
Q 018408          155 RTFQIDTIPLILGAIISAQA--H-------SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTK---YRGSLGTLCQVGT  222 (356)
Q Consensus       155 ~~~~~~~~~~~i~~~~~~~~--~-------~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~---~r~~~~~~~~~~~  222 (356)
                      ++++++.++..++.++..++  +       +...++++.++.++|.|+.=+....+.+|.++++   +|..+..++..+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            46777888888888875443  2       2357888899999999999999999999999875   3556777889999


Q ss_pred             HHHHHHHHHhhhccCCCCchhHHHHHHhHHHHHHHHHHhhc
Q 018408          223 CLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQF  263 (356)
Q Consensus       223 ~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~  263 (356)
                      ++|..++..+.+++.++.+ |.+.|.++++..+++++..+.
T Consensus        82 n~G~~~~~~~~~~i~~~~~-~~~~f~i~~~~~~~~~~~f~~  121 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYG-WFLGFGIPAIGMLLALIVFLS  121 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS--HHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhhhHhhcccchhhccccc-hhhhhhHHHHHHHHHHHHHHh
Confidence            9999999999999988888 999999998888877766554

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=97.72  E-value=0.002  Score=61.87  Aligned_cols=155  Identities=15%  Similarity=0.095  Sum_probs=114.9

Q ss_pred             chhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhh-chhHHHHHhHHHHHHHHHHHHHhhh--------
Q 018408          106 MNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKL-GCRRTFQIDTIPLILGAIISAQAHS--------  176 (356)
Q Consensus       106 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~i~~~~~~~~~~--------  176 (356)
                      ......++.++++.+  ...+.-....+........+++++++|-| ||-+++.++.++..++..+..++..        
T Consensus        57 ~~nlv~ylt~~~~~~--~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~  134 (571)
T KOG1237|consen   57 VSNLVTYLTLELHAS--GGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFM  134 (571)
T ss_pred             hhHHHHHHHHHhccc--hHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Confidence            455567888888884  34455556666666677788999999986 9999999988888888655543211        


Q ss_pred             -----------------HHHHHHHHHHHHhhhhhhhhHHHHHHHhhcC---C-C--ccchhHHHhHHHHHHHHHHHHHhh
Q 018408          177 -----------------LDEMLWGRFLVGLGIGVNTVLVPIYISEVAP---T-K--YRGSLGTLCQVGTCLGIITSLFLG  233 (356)
Q Consensus       177 -----------------~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p---~-~--~r~~~~~~~~~~~~~g~~~~~~i~  233 (356)
                                       ...++.+..+..+|.|+.-+....+-+|-++   + +  .+...+.++....++|..++..+.
T Consensus       135 ~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~  214 (571)
T KOG1237|consen  135 CKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVL  214 (571)
T ss_pred             ccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHH
Confidence                             1245556677788899988999999999998   2 2  223677788999999999999998


Q ss_pred             hccCCCCchhHHHHHHhHHHHHHHHHHhhc
Q 018408          234 IPAEDDPHWWRTMLYIASLPGFILALGMQF  263 (356)
Q Consensus       234 ~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~  263 (356)
                      .+..+..+ |.+.|.+..+..++++++.+.
T Consensus       215 vyiq~~~~-w~lgf~i~~~~~~lai~iF~~  243 (571)
T KOG1237|consen  215 VYIQDNVG-WKLGFGIPTVLNALAILIFLP  243 (571)
T ss_pred             Hhhhhccc-ceeeccHHHHHHHHHHHHHHc
Confidence            88877777 999998887776666554433

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.62  E-value=0.0066  Score=56.11  Aligned_cols=147  Identities=19%  Similarity=0.164  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHH
Q 018408           89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA  168 (356)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~  168 (356)
                      .+..+++..+..+..-.+...+..+...-|+  ++...|..-+...+..+.|.+...++.+|+|..|.=.++.....++.
T Consensus       260 vflas~alalLY~TVLsf~~lmt~yl~~~G~--s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L  337 (432)
T PF06963_consen  260 VFLASFALALLYFTVLSFGGLMTAYLKSQGY--SPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCL  337 (432)
T ss_pred             HHHHHHHHHHHHHHHhcCcHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Confidence            4444544444434333445555555556688  66678888888888899999999999999999988777766555444


Q ss_pred             HHHHH---h---h----hHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccC
Q 018408          169 IISAQ---A---H----SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAE  237 (356)
Q Consensus       169 ~~~~~---~---~----~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~  237 (356)
                      .++..   .   +    +...++.+-.+.-+|.=+..-...-++.|..|.++||...|.-....++.-++...++-.+.
T Consensus       338 ~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~~  416 (432)
T PF06963_consen  338 ALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIFP  416 (432)
T ss_pred             HHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            43322   1   1    23344444555556655666777778899999999999999988888887777766655443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.58  E-value=0.0027  Score=59.30  Aligned_cols=122  Identities=15%  Similarity=0.065  Sum_probs=101.1

Q ss_pred             HHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHH-hhhhhhchhHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q 018408          112 SIAKELGFEGNPILEGLVVSIFIAGAFVGSISSG-SLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLG  190 (356)
Q Consensus       112 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~G~~  190 (356)
                      ++...+++  +..+.+.+.+...+...+++++.. .+...+|-|+++.+|+....+...+.+++++.++++....+.++.
T Consensus       267 yl~~~f~w--~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~  344 (463)
T KOG2816|consen  267 YLKAKFGW--NKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALA  344 (463)
T ss_pred             EEeeecCc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhh
Confidence            44567788  566688777877777788877766 777788999999999999999999999999999988887776665


Q ss_pred             hhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhcc
Q 018408          191 IGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPA  236 (356)
Q Consensus       191 ~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l  236 (356)
                      . ...+...++++-+..++++|+..++....-.+..+++|.+-+.+
T Consensus       345 ~-~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i  389 (463)
T KOG2816|consen  345 G-IVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNI  389 (463)
T ss_pred             c-chhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHH
Confidence            4 55688888999999999999999999999888888888876544

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.54  E-value=0.0019  Score=59.74  Aligned_cols=102  Identities=12%  Similarity=-0.008  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCC
Q 018408          130 VSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTK  209 (356)
Q Consensus       130 ~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~  209 (356)
                      .++....+.+++++.+.+.|+.|.|..++++..+.....+...+ .|-+-+++.-.+.|+|.+..+.....|++|...++
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~  134 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE  134 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence            66677778899999999999999999999999998888777755 45666778899999999999999999999999999


Q ss_pred             ccchhHHHhHHHHHHHHHHHHHh
Q 018408          210 YRGSLGTLCQVGTCLGIITSLFL  232 (356)
Q Consensus       210 ~r~~~~~~~~~~~~~g~~~~~~i  232 (356)
                      .+.+..++.-.....+.++|..+
T Consensus       135 tie~Nisi~Wai~~~~li~Ggi~  157 (461)
T KOG3098|consen  135 TIERNISIFWAIGQSSLIIGGII  157 (461)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHh
Confidence            99998888766666666666544

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=97.44  E-value=0.015  Score=54.81  Aligned_cols=150  Identities=15%  Similarity=0.073  Sum_probs=88.2

Q ss_pred             hHHHHHHHHHHHHHHHhhhhcchhhHHHHHHHhCCCC-ChhHHHHHHHHHHH-HHHHHHHhHHhhhhhhchhHHHHHhHH
Q 018408           85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEG-NPILEGLVVSIFIA-GAFVGSISSGSLADKLGCRRTFQIDTI  162 (356)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~Grr~~~~~~~~  162 (356)
                      .++.++.+.+..|+..+..+..-    .+.+.+=.+. .+....++=....+ +..+...+..+++++++|.+++-+...
T Consensus        22 E~~k~~~l~~m~f~i~f~y~~lR----~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~   97 (491)
T PF03219_consen   22 ELKKFLPLALMFFFILFNYTILR----DLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIII   97 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH----HhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            34556666666666655543322    2222211100 12223344333322 455667788999999999998877665


Q ss_pred             HHHHHHHHHHHh---------hh----------------------HHHHHHHHHHHHhhhhhhhh-HHHHHHHhhcCCCc
Q 018408          163 PLILGAIISAQA---------HS----------------------LDEMLWGRFLVGLGIGVNTV-LVPIYISEVAPTKY  210 (356)
Q Consensus       163 ~~~i~~~~~~~~---------~~----------------------~~~~~~~~~l~G~~~g~~~~-~~~~~~~e~~p~~~  210 (356)
                      .+.....++++.         ++                      .|.+.+.-...-+-.....+ .-+.+.+|.++.++
T Consensus        98 ~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~e  177 (491)
T PF03219_consen   98 PFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEE  177 (491)
T ss_pred             HHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence            555555555432         11                      11111111222222223333 45889999999999


Q ss_pred             cchhHHHhHHHHHHHHHHHHHhhhccCC
Q 018408          211 RGSLGTLCQVGTCLGIITSLFLGIPAED  238 (356)
Q Consensus       211 r~~~~~~~~~~~~~g~~~~~~i~~~l~~  238 (356)
                      -.+..+++..+.++|.++++.+...+.+
T Consensus       178 AKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  178 AKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999888777766

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.37  E-value=0.034  Score=51.65  Aligned_cols=106  Identities=17%  Similarity=0.185  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHHHHHHHhHHhhhhh---hchhHHHHHhHHHHHHHHHHHHHh------------------hhHHHHHHHH
Q 018408          126 EGLVVSIFIAGAFVGSISSGSLADK---LGCRRTFQIDTIPLILGAIISAQA------------------HSLDEMLWGR  184 (356)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~g~l~dr---~Grr~~~~~~~~~~~i~~~~~~~~------------------~~~~~~~~~~  184 (356)
                      .+.......+|..++..+.+.+.+|   +||++.+.++..+..+..++.-..                  +++....+.-
T Consensus       281 ~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~  360 (461)
T KOG3098|consen  281 IAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIG  360 (461)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHH
Confidence            4444445556666667777777755   799999999888888887776542                  2355667778


Q ss_pred             HHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHh
Q 018408          185 FLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFL  232 (356)
Q Consensus       185 ~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i  232 (356)
                      ++.|++-+......+.++...+ ++.|..+.+++-+-..++..++...
T Consensus       361 ~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~  407 (461)
T KOG3098|consen  361 FLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFF  407 (461)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhh
Confidence            8999999999999999999999 5668888888766666666555444

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.34  E-value=0.0043  Score=56.45  Aligned_cols=108  Identities=22%  Similarity=0.180  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHH-----HHHHHhhhHHHHHHHHHHHHhhhhhhhhHHH
Q 018408          125 LEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA-----IISAQAHSLDEMLWGRFLVGLGIGVNTVLVP  199 (356)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~-----~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~  199 (356)
                      +..+....|.+|-.++.--...+  |+  |+..+.+.+..+-..     .+.-+.++.+.+++..+..|+..|..+.-..
T Consensus       282 ~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF  357 (402)
T PF02487_consen  282 QYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTF  357 (402)
T ss_pred             HHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            35566666766655543222111  33  333333332222111     2223457888888889999999999999999


Q ss_pred             HHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhcc
Q 018408          200 IYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPA  236 (356)
Q Consensus       200 ~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l  236 (356)
                      ..+.|-.|+++|-.++|...++-++|..++.+++-.+
T Consensus       358 ~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  358 YRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998887654

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PRK03612 spermidine synthase; Provisional

Probab=97.34  E-value=0.042  Score=52.50  Aligned_cols=140  Identities=18%  Similarity=0.027  Sum_probs=76.4

Q ss_pred             HHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHH-hHHHHH-HHHHHHHHhhh----H-HHHHHHHHHH
Q 018408          115 KELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQI-DTIPLI-LGAIISAQAHS----L-DEMLWGRFLV  187 (356)
Q Consensus       115 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~-~~~~~~-i~~~~~~~~~~----~-~~~~~~~~l~  187 (356)
                      --+|-  +....+.+.+++..|..+|+.+++++.++.-|+...+- ...+.+ ++..+......    . ..++...++.
T Consensus        43 ~~~G~--s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~  120 (521)
T PRK03612         43 YLLGD--SVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLI  120 (521)
T ss_pred             HHhCc--hHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34565  56668889999999999999999888744333322111 111111 11111111111    1 1223344566


Q ss_pred             HhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccC-CCCchhHHHHHHhHHHHHHH
Q 018408          188 GLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAE-DDPHWWRTMLYIASLPGFIL  257 (356)
Q Consensus       188 G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~-~~~~~w~~~~~~~~~~~~~~  257 (356)
                      ++..|+..|....+..+... ++-|...|-......+|+++|.++.+++. ...|..+..+.++++..+++
T Consensus       121 ~~l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a  190 (521)
T PRK03612        121 GLLIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAA  190 (521)
T ss_pred             HHHHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            77788877776666554322 22355667777778888888887766544 34553444444444333333

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=97.30  E-value=0.084  Score=48.92  Aligned_cols=151  Identities=11%  Similarity=-0.018  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHHHHHhhhhcchhhHHHHHHHhCCC-CChhHHHHHHHHHHH-HHHHHHHhHHhhhhhhchhHHHHHhHHH
Q 018408           86 FPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFE-GNPILEGLVVSIFIA-GAFVGSISSGSLADKLGCRRTFQIDTIP  163 (356)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~Grr~~~~~~~~~  163 (356)
                      +..++.+.+..++..+..+.    +-.+.+.+..+ ..+....++=+...+ ++.+..++.+++.+++.|.+++.+.+..
T Consensus        26 ~~kflpl~Ll~f~I~~ny~~----lR~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~  101 (509)
T COG3202          26 LKKFLPLALLFFCILFNYNL----LRSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGF  101 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence            44445555555555554433    33455555443 123335566555555 6778888999999999999998887766


Q ss_pred             HHHHHHHHHHh---------hh-----------------------HHHHHHHHHHHHhhhhhhhh-HHHHHHHhhcCCCc
Q 018408          164 LILGAIISAQA---------HS-----------------------LDEMLWGRFLVGLGIGVNTV-LVPIYISEVAPTKY  210 (356)
Q Consensus       164 ~~i~~~~~~~~---------~~-----------------------~~~~~~~~~l~G~~~g~~~~-~~~~~~~e~~p~~~  210 (356)
                      +..+.+++++.         ++                       .|...+...+.=+-...... .-+...+|....++
T Consensus       102 F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~e  181 (509)
T COG3202         102 FLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEE  181 (509)
T ss_pred             HHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            66666666642         11                       01111111222222222223 45778899999999


Q ss_pred             cchhHHHhHHHHHHHHHHHHHhhhccCCCC
Q 018408          211 RGSLGTLCQVGTCLGIITSLFLGIPAEDDP  240 (356)
Q Consensus       211 r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~  240 (356)
                      -.+..++++++.+++..++..+..++..+.
T Consensus       182 akRFy~lf~l~~ni~lllsg~~~~~~~k~~  211 (509)
T COG3202         182 AKRFYPLFGLGANISLLLSGEVTSWLSKHR  211 (509)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence            999999999999999999999988887644

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=97.23  E-value=0.03  Score=50.77  Aligned_cols=91  Identities=10%  Similarity=-0.033  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHHH
Q 018408          177 LDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFI  256 (356)
Q Consensus       177 ~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~  256 (356)
                      +...++.-.+.+++.|..+...+...++ +|++.-...++=.++++.+-+.+.-..-....+...+-...|.+..++.++
T Consensus       117 f~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~ytqavm~G~a~aG~l~Sl~~i~tka~~~~~~~sA~~yF~~s~~~~ll  195 (406)
T KOG1479|consen  117 FLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEYTQAVMSGQALAGTLTSLLRILTKAAFSDSRTSALIYFITSTVILLL  195 (406)
T ss_pred             HHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHHHHHHHhcchhHhHHHHHHHHHHHHhcCCCCceeehhHHHHHHHHHH
Confidence            4455566777888888777777766655 565544333332233333322222222222223222244556666777777


Q ss_pred             HHHHhhcccCCh
Q 018408          257 LALGMQFTVESP  268 (356)
Q Consensus       257 ~~~~~~~~~e~p  268 (356)
                      +++++..+|+.|
T Consensus       196 C~i~y~~l~~lp  207 (406)
T KOG1479|consen  196 CFVLYLVLPKLP  207 (406)
T ss_pred             HHHHHHHhhcch
Confidence            777777777776

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=97.23  E-value=0.026  Score=52.29  Aligned_cols=134  Identities=13%  Similarity=0.008  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHHHHHHHhHHhhhhhhchh-------HHHHHhHHHHHHHHHHHHHh----------hhHHHHHHHHHHHH
Q 018408          126 EGLVVSIFIAGAFVGSISSGSLADKLGCR-------RTFQIDTIPLILGAIISAQA----------HSLDEMLWGRFLVG  188 (356)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr-------~~~~~~~~~~~i~~~~~~~~----------~~~~~~~~~~~l~G  188 (356)
                      .++..+...+.-++..++..++..+.+++       .-+-+++++++.+.++....          .+.++++...++++
T Consensus       326 ~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s  405 (498)
T COG3104         326 PAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQS  405 (498)
T ss_pred             HHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHH
Confidence            46777777777778888877777775554       22445666666665555433          25678888899999


Q ss_pred             hhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccC------CCCchhHHHHHHhHHHHHHHHHH
Q 018408          189 LGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAE------DDPHWWRTMLYIASLPGFILALG  260 (356)
Q Consensus       189 ~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~------~~~~~w~~~~~~~~~~~~~~~~~  260 (356)
                      ++.=+..++...+++...|++..+..++++.+....|..++..+++.-.      +... ....|+..+...++..+.
T Consensus       406 ~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~-~~~~F~~~g~v~i~~~~~  482 (498)
T COG3104         406 FGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFI-EGRVFGTIGVVAIVIGIL  482 (498)
T ss_pred             HHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhh-hhhhHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998888888888877776322      2222 445566655555544433

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=97.16  E-value=0.003  Score=57.66  Aligned_cols=151  Identities=21%  Similarity=0.133  Sum_probs=84.2

Q ss_pred             HHHHHHHHHhhhhcchhhHH----HHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhch-------hHHHHHh
Q 018408           92 ASMSNFLFGYHIGVMNGPIV----SIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGC-------RRTFQID  160 (356)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr-------r~~~~~~  160 (356)
                      ..+++....+..+.+..+.|    +..+-.|.+.+.  ..++..++..+..+|.+++|.++||+.|       .+.=.+.
T Consensus       249 ~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~--~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~  326 (493)
T KOG1330|consen  249 SSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNA--TLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLS  326 (493)
T ss_pred             ehHHHHHHHHhccccchhhhhHHHHHHHHhCCcccc--chhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHH
Confidence            34444444444444444443    223333543233  4577788888999999999999999533       2221222


Q ss_pred             HHH----HHHHHHHHHH-hhhHHHHHHHHHHHHhhhhh-hhhHHHHHHHhhcCCCccchhHHHh-HHHHHHHHHHHHHhh
Q 018408          161 TIP----LILGAIISAQ-AHSLDEMLWGRFLVGLGIGV-NTVLVPIYISEVAPTKYRGSLGTLC-QVGTCLGIITSLFLG  233 (356)
Q Consensus       161 ~~~----~~i~~~~~~~-~~~~~~~~~~~~l~G~~~g~-~~~~~~~~~~e~~p~~~r~~~~~~~-~~~~~~g~~~~~~i~  233 (356)
                      ..+    .+.+..+... ..+...+.+..+++|..... ..+...-...|..|++.|..+.++- .+...+|-+-+|.+.
T Consensus       327 ~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~iv  406 (493)
T KOG1330|consen  327 AALGAPLSIPFLFLFPAFTSSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIV  406 (493)
T ss_pred             HhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCccee
Confidence            222    2222222221 22233333344555554333 3455556778999999999999985 455566666667677


Q ss_pred             hccCCCCchhH
Q 018408          234 IPAEDDPHWWR  244 (356)
Q Consensus       234 ~~l~~~~~~w~  244 (356)
                      |.+.++..+|+
T Consensus       407 Gilsd~l~g~~  417 (493)
T KOG1330|consen  407 GILSDKLRGYK  417 (493)
T ss_pred             hhHHHHhhCCC
Confidence            87777643354

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.07  E-value=0.0033  Score=57.26  Aligned_cols=151  Identities=13%  Similarity=0.069  Sum_probs=90.2

Q ss_pred             HHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhch-hHHHHHhHHHHHHHHHHHHHhh----hHHHHHHHHHHHHh
Q 018408          115 KELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGC-RRTFQIDTIPLILGAIISAQAH----SLDEMLWGRFLVGL  189 (356)
Q Consensus       115 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr-r~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~l~G~  189 (356)
                      ..-|+  +....|++.....++.++++++.|.+.||... |.++.+......++..+....+    ..+.++..-.+.|+
T Consensus       294 ~~sgY--~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~  371 (480)
T KOG2563|consen  294 CPSGY--EGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGF  371 (480)
T ss_pred             ccccC--CccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHH
Confidence            34456  33558999999999999999999999999754 5555555555555533222221    23344555667788


Q ss_pred             hhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCc--hhHH-HHHHhHHHHHHHHHHhhcccC
Q 018408          190 GIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPH--WWRT-MLYIASLPGFILALGMQFTVE  266 (356)
Q Consensus       190 ~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~--~w~~-~~~~~~~~~~~~~~~~~~~~e  266 (356)
                      +..+..|+..-+-.|..-+..-+.-.|+.++...+-+.+-.++-+...+..+  +|.. .-+......++.+++..++++
T Consensus       372 ~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~  451 (480)
T KOG2563|consen  372 FGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRP  451 (480)
T ss_pred             hhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhh
Confidence            8878888777777776655555667777665555555555555555544332  1233 222333334444444445544


Q ss_pred             C
Q 018408          267 S  267 (356)
Q Consensus       267 ~  267 (356)
                      .
T Consensus       452 ~  452 (480)
T KOG2563|consen  452 D  452 (480)
T ss_pred             h
Confidence            3

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.03  E-value=0.0017  Score=58.96  Aligned_cols=125  Identities=17%  Similarity=0.038  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccc
Q 018408          133 FIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRG  212 (356)
Q Consensus       133 ~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~  212 (356)
                      -.+-..+..+++.++.+|+.-+.=+.+..+++.++.++.+++++.+.-+++-.+.+++.|........+.. .+++    
T Consensus        68 di~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y~~----  142 (402)
T PF02487_consen   68 DILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FYGK----  142 (402)
T ss_pred             HHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hcCc----
Confidence            33445566677788888886554455667788888888899999998888999999999888887777644 5554    


Q ss_pred             hhHHHhHHHHHHHHHHHHHhhhccCCCCc-hhHHHHHHhHHHHHHHHHHhhc
Q 018408          213 SLGTLCQVGTCLGIITSLFLGIPAEDDPH-WWRTMLYIASLPGFILALGMQF  263 (356)
Q Consensus       213 ~~~~~~~~~~~~g~~~~~~i~~~l~~~~~-~w~~~~~~~~~~~~~~~~~~~~  263 (356)
                      ...+-+..+.+.++++|+..-..+.+ .+ +-|..+.+...+.++..+.+++
T Consensus       143 ~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~  193 (402)
T PF02487_consen  143 SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFF  193 (402)
T ss_pred             cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHH
Confidence            34667777777777777776555554 32 1466666666555555544444

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=96.96  E-value=0.001  Score=56.34  Aligned_cols=91  Identities=23%  Similarity=0.273  Sum_probs=61.4

Q ss_pred             HHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhh
Q 018408          112 SIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGI  191 (356)
Q Consensus       112 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~G~~~  191 (356)
                      ++-+++|+...+  ++.+...-+...++...+.|-++||-|||+..+.-++-..+++ +.-.++.+..++++|.+.|++.
T Consensus        62 yLYstYgFgkG~--IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC-iTKhSpqYkVLmVGR~LGGiaT  138 (454)
T KOG4332|consen   62 YLYSTYGFGKGD--IGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC-ITKHSPQYKVLMVGRVLGGIAT  138 (454)
T ss_pred             eeehhcCccCCc--cceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH-HhhcCCceEEEeehhhhhhHHH
Confidence            445667774333  5555444444556777788899999999997665444443332 2234578899999999999999


Q ss_pred             hhhhhHHHH-HHHhh
Q 018408          192 GVNTVLVPI-YISEV  205 (356)
Q Consensus       192 g~~~~~~~~-~~~e~  205 (356)
                      +..+....+ ++.|-
T Consensus       139 sLLFSaFEsWliaEH  153 (454)
T KOG4332|consen  139 SLLFSAFESWLIAEH  153 (454)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            887776655 34554

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=96.96  E-value=0.0043  Score=57.28  Aligned_cols=143  Identities=13%  Similarity=0.125  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHH--hCCCCChhHHHHHHHHHHHHHH-HHHHhHHhhhh-----hhchhHHHHHhH
Q 018408           90 LIASMSNFLFGYHIGVMNGPIVSIAKE--LGFEGNPILEGLVVSIFIAGAF-VGSISSGSLAD-----KLGCRRTFQIDT  161 (356)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~-~~~~~~g~l~d-----r~Grr~~~~~~~  161 (356)
                      .++.+.++++|.-.+......|.+.++  -+.  +-++.+...-+.   +. -..+++.++.|     |+||||..++-.
T Consensus         3 ~lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~--sy~q~~~fSla~---~PfSlKlLWaPiVDs~y~~~~GRRKSWiiP~   77 (544)
T PF13000_consen    3 ALLVLLYFLQGIPLGLAFGSIPFLLQSMAKKV--SYSQQAIFSLAS---YPFSLKLLWAPIVDSVYSKRIGRRKSWIIPI   77 (544)
T ss_pred             eHHHHHHHHcCcccccccccchhhhccccCCC--ChhHheeeeeee---chhHHHHhhhhhhhhhcccccCCcchhhhHH
Confidence            345566777777777665567777777  444  333343322111   11 12345555555     789999876632


Q ss_pred             -HHHHHHHHHHHHhh----------------------hH--HHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHH
Q 018408          162 -IPLILGAIISAQAH----------------------SL--DEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGT  216 (356)
Q Consensus       162 -~~~~i~~~~~~~~~----------------------~~--~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~  216 (356)
                       .+.++..+..+..-                      +.  ..+....++.-+..+--...+-...-.+..+++++.+..
T Consensus        78 Q~l~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~AST  157 (544)
T PF13000_consen   78 QYLSGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYAST  157 (544)
T ss_pred             HHHHHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHH
Confidence             33333333322111                      01  112222223333333333333344455667788888888


Q ss_pred             HhHHHHHHHHHHHHHhhhccC
Q 018408          217 LCQVGTCLGIITSLFLGIPAE  237 (356)
Q Consensus       217 ~~~~~~~~g~~~~~~i~~~l~  237 (356)
                      -...+.++|.+++..+.-.+.
T Consensus       158 cqtvG~~~Gyfls~tvFlaln  178 (544)
T PF13000_consen  158 CQTVGQTAGYFLSFTVFLALN  178 (544)
T ss_pred             HHHhHhhhhHHHHHHHHHhhC
Confidence            778888888888777655444

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=96.72  E-value=0.00039  Score=66.44  Aligned_cols=152  Identities=15%  Similarity=0.166  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhcchhhHH-HHHHHhCCCCChhHHHHHHHHHHH-HHHHHHHhHHhhhhhh--chhHHHHHhH
Q 018408           86 FPHVLIASMSNFLFGYHIGVMNGPIV-SIAKELGFEGNPILEGLVVSIFIA-GAFVGSISSGSLADKL--GCRRTFQIDT  161 (356)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~--Grr~~~~~~~  161 (356)
                      .+.++...++.....+....+.++.| ++..+|+.  +++.++++..+..+ +.++|.+++|++..|+  +.|..+.+..
T Consensus       304 Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~--sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~  381 (539)
T PF03137_consen  304 NPVFMCLILAGVFESFIVSGFATFLPKYLESQFGL--SASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCI  381 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHH
Confidence            34456666666666666666777776 45667888  44446666665544 6778999999999987  3344444443


Q ss_pred             HHHHHHHHHHH---H--------h-------------------------------------------hhHHHHHHHHHHH
Q 018408          162 IPLILGAIISA---Q--------A-------------------------------------------HSLDEMLWGRFLV  187 (356)
Q Consensus       162 ~~~~i~~~~~~---~--------~-------------------------------------------~~~~~~~~~~~l~  187 (356)
                      +...+..++..   +        +                                           +++..+++..++.
T Consensus       382 v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~  461 (539)
T PF03137_consen  382 VVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFIL  461 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHH
Confidence            33333332210   0        0                                           0012233334444


Q ss_pred             HhhhhhhhhHHHHHHHhhcCCCccchhHHHhH-HHHHHHHHHHHHhhhccCCC
Q 018408          188 GLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQ-VGTCLGIITSLFLGIPAEDD  239 (356)
Q Consensus       188 G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~-~~~~~g~~~~~~i~~~l~~~  239 (356)
                      -+..+.........+-...|+++|+.++|+.. +...+|.+=+|++.|.+.|.
T Consensus       462 ~~~~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~  514 (539)
T PF03137_consen  462 SFFTFMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS  514 (539)
T ss_dssp             -----------------------------------------------------
T ss_pred             HHHHHhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence            44444555555556667888999999999964 55566888889998888875

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=96.63  E-value=0.011  Score=55.21  Aligned_cols=146  Identities=14%  Similarity=0.063  Sum_probs=96.0

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHh----------hhHHHHHHHHHHHHhhh
Q 018408          122 NPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQA----------HSLDEMLWGRFLVGLGI  191 (356)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~----------~~~~~~~~~~~l~G~~~  191 (356)
                      ++...+.+..+..++..+|..+.....-+..-|+++..+.++.++..+.....          ++.+..+.--++..+..
T Consensus       253 s~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~~  332 (433)
T PF03092_consen  253 SPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVIG  332 (433)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHHH
Confidence            66667777777777788888888777777778888887777766665543211          11122222345566666


Q ss_pred             hhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCc-------hhHHHHHHhHHHHHHHHHHhhcc
Q 018408          192 GVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPH-------WWRTMLYIASLPGFILALGMQFT  264 (356)
Q Consensus       192 g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~-------~w~~~~~~~~~~~~~~~~~~~~~  264 (356)
                      +..+-....+++|+.|+..-|+..++.....++|..++..++..+.+..+       +-.+..+++.+..++.+....++
T Consensus       333 ~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~lL  412 (433)
T PF03092_consen  333 MIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLFLL  412 (433)
T ss_pred             HHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHHc
Confidence            66677777899999999999999998877777777777776665543221       12344445555555555556667


Q ss_pred             cCC
Q 018408          265 VES  267 (356)
Q Consensus       265 ~e~  267 (356)
                      |+.
T Consensus       413 p~~  415 (433)
T PF03092_consen  413 PPQ  415 (433)
T ss_pred             CCC
Confidence            765

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=96.59  E-value=0.0064  Score=56.55  Aligned_cols=74  Identities=8%  Similarity=0.098  Sum_probs=59.0

Q ss_pred             HHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHHHHH
Q 018408          184 RFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILA  258 (356)
Q Consensus       184 ~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~  258 (356)
                      -++.|++.-.......++-+|...++.++...++++....++..++|++........| .+++..+.+...++..
T Consensus       395 i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g-~~~v~~~~~~~~l~~~  468 (488)
T KOG2325|consen  395 IVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSG-PRPVWIILLCLLLVVA  468 (488)
T ss_pred             hheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcC-ccHHHHHHHHHHHHHH
Confidence            4456776666667778888999999999999999999999999999999888888777 7777776555444443

>TIGR00805 oat sodium-independent organic anion transporter

Probab=96.45  E-value=0.022  Score=55.97  Aligned_cols=80  Identities=8%  Similarity=0.130  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHHhhhhcchhhHHHH-HHHhCCCCChhHHHHHHHHHHH-HHHHHHHhHHhhhhhhc--hhHHHHHhHHHH
Q 018408           89 VLIASMSNFLFGYHIGVMNGPIVSI-AKELGFEGNPILEGLVVSIFIA-GAFVGSISSGSLADKLG--CRRTFQIDTIPL  164 (356)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~G--rr~~~~~~~~~~  164 (356)
                      ++...+..+........+..++|.+ .+.+|+  +..+.+++.+...+ +.+++.+++|+++||++  .|+.+.++.++.
T Consensus       332 f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~--s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~  409 (633)
T TIGR00805       332 YMLVILAQVIDSLAFNGYITFLPKYLENQYGI--SSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLS  409 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--cHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHH
Confidence            3444444444444444455556644 556888  56668888877665 67899999999999998  456666666555


Q ss_pred             HHHHHH
Q 018408          165 ILGAII  170 (356)
Q Consensus       165 ~i~~~~  170 (356)
                      .++.++
T Consensus       410 ~~~~~~  415 (633)
T TIGR00805       410 TLSYLL  415 (633)
T ss_pred             HHHHHH
Confidence            555433

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=96.28  E-value=0.044  Score=51.09  Aligned_cols=88  Identities=9%  Similarity=0.013  Sum_probs=46.5

Q ss_pred             hHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHh---hh-ccCCC--Cc-hhHHHHH
Q 018408          176 SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFL---GI-PAEDD--PH-WWRTMLY  248 (356)
Q Consensus       176 ~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i---~~-~l~~~--~~-~w~~~~~  248 (356)
                      .++..++.-++.|++.+........+.+ .+|++    .++.+..+.+++++++..+   .. ...+.  .. +-...|.
T Consensus       105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~----~~~a~~~G~g~aGv~~s~~~ii~~a~~~~~~~~~~~a~~YF~  179 (437)
T TIGR00939       105 FFVTTMASVVIINSGMALLQGSLFGLAG-VFPST----YSSAVMSGQGLAGVLTSLAMILVKASGNDSHGLKKSALGYFG  179 (437)
T ss_pred             HHHHHHHHHHHHHhhhhhhcccchhhcc-cCCHH----HHHHHHhcchhHHHHHHHHHHHHHHhcCCccchhhhhhhHHH
Confidence            3455566677888888888887777765 56654    3333344444444333332   11 12221  11 1223344


Q ss_pred             HhHHHHHHHHHHhhcccCCh
Q 018408          249 IASLPGFILALGMQFTVESP  268 (356)
Q Consensus       249 ~~~~~~~~~~~~~~~~~e~p  268 (356)
                      +++++.+++++.+..+++.|
T Consensus       180 ~a~~v~l~~i~~~~~l~k~~  199 (437)
T TIGR00939       180 TPCVVQLICIVCYLLLPKLP  199 (437)
T ss_pred             HHHHHHHHHHHHHHHHhcCH
Confidence            45555666666666677766

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=96.23  E-value=1  Score=41.90  Aligned_cols=168  Identities=7%  Similarity=-0.129  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHH
Q 018408           90 LIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAI  169 (356)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~  169 (356)
                      ..++...+...++.-+.....+.+..+..- .+-...+...-.-.+..+++.+..|.+.||..|.+++..+.+..-++..
T Consensus         5 ~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p-~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~   83 (432)
T PF06963_consen    5 WRLYLSHFLSTWGDRMWEFAVPLFLISIFP-GSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVA   83 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHH
Confidence            344555555555555555555555555521 1332244444455556677888889999999999987776554444333


Q ss_pred             HHHH------h--h----hHHHH---HHHHHHHHhhhhhhh-hHHHHHHHhhcC------CCccchhHHHhHHHHHHHHH
Q 018408          170 ISAQ------A--H----SLDEM---LWGRFLVGLGIGVNT-VLVPIYISEVAP------TKYRGSLGTLCQVGTCLGII  227 (356)
Q Consensus       170 ~~~~------~--~----~~~~~---~~~~~l~G~~~g~~~-~~~~~~~~e~~p------~~~r~~~~~~~~~~~~~g~~  227 (356)
                      +.+.      .  .    +.+..   ++.-.+.|...-... ....+.=-||..      +..+.+.++...-.--+--+
T Consensus        84 ~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckl  163 (432)
T PF06963_consen   84 ASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKL  163 (432)
T ss_pred             HHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHH
Confidence            2221      1  1    01111   111112221111111 111111123322      22233444444444455678


Q ss_pred             HHHHhhhccCCCCchhHHHHHHhHHHHHHHHH
Q 018408          228 TSLFLGIPAEDDPHWWRTMLYIASLPGFILAL  259 (356)
Q Consensus       228 ~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~  259 (356)
                      ++|++.+.+.+..+ ......+.++..++..+
T Consensus       164 laPl~vG~l~t~~s-~~~~~~~i~~~N~~S~~  194 (432)
T PF06963_consen  164 LAPLFVGLLMTFAS-PVIAAIFIAGWNLASVF  194 (432)
T ss_pred             HHHHHHHHHhhccC-HHHHHHHHHHHHHHHHH
Confidence            89999998888666 66665555555555443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=96.14  E-value=0.0055  Score=57.03  Aligned_cols=83  Identities=20%  Similarity=0.334  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHH-hHHHHHHHH
Q 018408           90 LIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQI-DTIPLILGA  168 (356)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~-~~~~~~i~~  168 (356)
                      +.+=+..+..+...+...+.++.+.+++|+  ++.+.|.+...--+..+++.+++|+++||+-+||.+++ ++++...+.
T Consensus        14 ~~~k~f~~~~~~~~g~l~pll~vy~kQLGl--~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~   91 (618)
T KOG3762|consen   14 IVAKLFYLFFGARFGSLFPLLAVYFKQLGL--NPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTAT   91 (618)
T ss_pred             heeeeeeeeeeecccccchHHHHHHHHcCC--CHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence            333344444555666777888889999999  77789999999999999999999999999987776666 455555555


Q ss_pred             HHHHHh
Q 018408          169 IISAQA  174 (356)
Q Consensus       169 ~~~~~~  174 (356)
                      ++..+.
T Consensus        92 fll~fv   97 (618)
T KOG3762|consen   92 FLLVFV   97 (618)
T ss_pred             Hheeec
Confidence            555543

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=95.90  E-value=0.13  Score=48.05  Aligned_cols=108  Identities=11%  Similarity=0.022  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHHHHHHhHHhhhhhhchh--HHHHH--hHHHHHHHHHHHHHh---------hhHHHHHHHHHHHHhhhh
Q 018408          126 EGLVVSIFIAGAFVGSISSGSLADKLGCR--RTFQI--DTIPLILGAIISAQA---------HSLDEMLWGRFLVGLGIG  192 (356)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr--~~~~~--~~~~~~i~~~~~~~~---------~~~~~~~~~~~l~G~~~g  192 (356)
                      .-+....+++|-.+|..+..+.. .-++|  .+++.  .-++.....+++..-         ++-+..++..++.|+..|
T Consensus       309 ~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnG  387 (437)
T TIGR00939       309 PIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNG  387 (437)
T ss_pred             HHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhh
Confidence            34556677777777777554321 11222  32222  222333333333222         345566777999999999


Q ss_pred             hhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhh
Q 018408          193 VNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGI  234 (356)
Q Consensus       193 ~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~  234 (356)
                      -..+....+..+..++++|-.+..+...+..+|..+|..++.
T Consensus       388 y~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~  429 (437)
T TIGR00939       388 YLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSF  429 (437)
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999988888888888888888777643

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=95.59  E-value=0.022  Score=50.25  Aligned_cols=132  Identities=17%  Similarity=0.124  Sum_probs=91.5

Q ss_pred             HHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHH
Q 018408          137 AFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGT  216 (356)
Q Consensus       137 ~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~  216 (356)
                      +.+.-++.=.+.|-.--|+++++-.+.......+..+.++.+.+=+.-++.|...+. ....++|+-+..+++++-+..+
T Consensus        55 YLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAa-EIAYysYIYs~Vd~~~Yqrvt~  133 (433)
T KOG3810|consen   55 YLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAA-EIAYYSYIYSKVDPEMYKRVTG  133 (433)
T ss_pred             HHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHH-HHhhhheeeeecCHHHHHHHHH
Confidence            444555555688888888888887777777777777888888877777777776644 3556777878888899999999


Q ss_pred             HhHHHHHHHHHHHHHhhhccCCCCc-hhHHHHHHhHHHHHHHHHHhhcccCChH
Q 018408          217 LCQVGTCLGIITSLFLGIPAEDDPH-WWRTMLYIASLPGFILALGMQFTVESPR  269 (356)
Q Consensus       217 ~~~~~~~~g~~~~~~i~~~l~~~~~-~w~~~~~~~~~~~~~~~~~~~~~~e~p~  269 (356)
                      ......-.|-..|..++-.+..... ++...-++......+..+..+|+|..+|
T Consensus       134 y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~r  187 (433)
T KOG3810|consen  134 YCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKR  187 (433)
T ss_pred             HhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCch
Confidence            8877777777777776666554322 1444444555555556666777777654

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=95.58  E-value=0.089  Score=46.13  Aligned_cols=97  Identities=14%  Similarity=0.160  Sum_probs=63.0

Q ss_pred             HHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCC--Ccc--
Q 018408          136 GAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPT--KYR--  211 (356)
Q Consensus       136 ~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~--~~r--  211 (356)
                      .-+..+++.+.+..++|-|.++.++........ ..-+-+.+..++..-...|++.+..++.--+|++++...  +.|  
T Consensus        70 ~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyi-A~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~~~~~  148 (390)
T KOG3097|consen   70 SLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYI-AANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYANQRGE  148 (390)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HhhcchhHHhhccHHHhhccccccccccCcceecHHHHHHHHhhhh
Confidence            344566666689999999999887766544432 111335677888889999999988877777776665532  334  


Q ss_pred             -------chhH----HHhHHHHHHHHHHHHHhh
Q 018408          212 -------GSLG----TLCQVGTCLGIITSLFLG  233 (356)
Q Consensus       212 -------~~~~----~~~~~~~~~g~~~~~~i~  233 (356)
                             .+..    .+++...-+|..++..+.
T Consensus       149 q~~~~~~~~ffg~Ffii~~~~qv~gn~issli~  181 (390)
T KOG3097|consen  149 QAGDGMKVRFFGEFFIIFQCAQVWGNLISSLIM  181 (390)
T ss_pred             hccCceeeeehhHHHHHHHHHHHHHHHHHHHHH
Confidence                   2333    445666666666655543

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=95.01  E-value=0.9  Score=41.75  Aligned_cols=95  Identities=5%  Similarity=-0.081  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHH--hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 018408          125 LEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQI--DTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYI  202 (356)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~  202 (356)
                      -.|.+-++..+.+.++.+..|++..+..+..-+.+  ..++.+...++++..+|.+..+++-++.+.......+....-+
T Consensus       286 YNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~~qI  365 (412)
T PF01770_consen  286 YNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIASFQI  365 (412)
T ss_pred             cchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36777888888888899999998766666544443  3445555566677888999988888887777766666666666


Q ss_pred             HhhcCCCccchhHHHhH
Q 018408          203 SEVAPTKYRGSLGTLCQ  219 (356)
Q Consensus       203 ~e~~p~~~r~~~~~~~~  219 (356)
                      +.....+.-|..+|+..
T Consensus       366 A~~l~~e~yaLVFGiNt  382 (412)
T PF01770_consen  366 AKNLSEERYALVFGINT  382 (412)
T ss_pred             HHhccccceeeeeeeHH
Confidence            66666665666666554

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=93.48  E-value=0.026  Score=50.11  Aligned_cols=107  Identities=15%  Similarity=0.150  Sum_probs=3.7

Q ss_pred             HHHHHHHHHHHHHHhHHhhhhhh-chhHHHHHh--HHHHHHHHHHHHH----------hhhHHHHHHHHHHHHhhhhhhh
Q 018408          129 VVSIFIAGAFVGSISSGSLADKL-GCRRTFQID--TIPLILGAIISAQ----------AHSLDEMLWGRFLVGLGIGVNT  195 (356)
Q Consensus       129 ~~~~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~--~~~~~i~~~~~~~----------~~~~~~~~~~~~l~G~~~g~~~  195 (356)
                      ....++++-.+|..+.++.--+. .+|..++.+  -++.....+++..          .++-+..++..++.|+..|-..
T Consensus       187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl~  266 (309)
T PF01733_consen  187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYLS  266 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchhh
Confidence            45568888888888777542111 344433321  2222222222211          2344566777889999999999


Q ss_pred             hHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhc
Q 018408          196 VLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIP  235 (356)
Q Consensus       196 ~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~  235 (356)
                      +....+..+..++++|..+..+..++..+|..+|..++..
T Consensus       267 tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~~  306 (309)
T PF01733_consen  267 TLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSFL  306 (309)
T ss_dssp             HHHH------------------------------------
T ss_pred             hceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999888888888888888777766543

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=90.54  E-value=0.23  Score=45.71  Aligned_cols=129  Identities=10%  Similarity=-0.078  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhc-
Q 018408          128 LVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVA-  206 (356)
Q Consensus       128 ~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~-  206 (356)
                      |=..++.+...+.+...-++.+|+|-|+.++.+...+.++..+.++.++.......+...|+-.+....+-+..++++. 
T Consensus       336 ~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y~~  415 (498)
T KOG0637|consen  336 LGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALALYAI  415 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHHHHHH
Confidence            3344555666678888899999999777666666667777777777777777777777777544443333333322221 


Q ss_pred             --------------------CCCcc--chhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHHH
Q 018408          207 --------------------PTKYR--GSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFI  256 (356)
Q Consensus       207 --------------------p~~~r--~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~  256 (356)
                                          ....|  |...|+.+....+..++.....|.+.+..|+-+.+-+..+..++.
T Consensus       416 ~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G~~~~~~~~~~a~s~~  487 (498)
T KOG0637|consen  416 LGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFGGGNLPAFVSGAVALL  487 (498)
T ss_pred             hCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhcCCcchhHHHHHHHHHH
Confidence                                11223  444455666666666666666666666555445554444444333

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=88.88  E-value=3.1  Score=38.13  Aligned_cols=108  Identities=19%  Similarity=0.144  Sum_probs=68.6

Q ss_pred             HHHHHHH-HHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHH-HH------HhhhHHHHHHHHHHHHhhhhhhhhH
Q 018408          126 EGLVVSI-FIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAII-SA------QAHSLDEMLWGRFLVGLGIGVNTVL  197 (356)
Q Consensus       126 ~~~~~~~-~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~-~~------~~~~~~~~~~~~~l~G~~~g~~~~~  197 (356)
                      ...+... +++.-.+|.+...++-+.=.|+.......=+..+..+. |-      .-.+-+.+++...++|+..|=....
T Consensus       284 ~~~~~~l~fN~~d~vG~~~a~~~~~~~~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYltsl  363 (406)
T KOG1479|consen  284 ALLLVFLSFNVFDLIGSILAALLTWPDPRKLTIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLTSL  363 (406)
T ss_pred             HHHHHHHHhHHHHHhhhhhhhcccCCCCceehHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHhhh
Confidence            4445555 78888888666666554433332222222111111121 11      1345567788889999999888888


Q ss_pred             HHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhh
Q 018408          198 VPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLG  233 (356)
Q Consensus       198 ~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~  233 (356)
                      ...+..+..|++++-.+..+..+....|...|..++
T Consensus       364 ~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s  399 (406)
T KOG1479|consen  364 IMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLS  399 (406)
T ss_pred             eehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            888888989888887777777777777777766653

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=87.73  E-value=14  Score=34.91  Aligned_cols=60  Identities=15%  Similarity=0.019  Sum_probs=44.8

Q ss_pred             HHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCC
Q 018408          181 LWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP  240 (356)
Q Consensus       181 ~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~  240 (356)
                      ++.-++..+.....+....++-+.+..+..=|+.|.+.+...++|+--...+.-.++|..
T Consensus       409 I~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~f  468 (544)
T PF13000_consen  409 IIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYF  468 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhc
Confidence            334566667777777888889999999999999999999988888755555554444443

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=87.56  E-value=7.8  Score=28.71  Aligned_cols=43  Identities=28%  Similarity=0.352  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHH
Q 018408          125 LEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILG  167 (356)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~  167 (356)
                      ..+.......++..++..+.+.+.|..|.+..+.+...+..+.
T Consensus        88 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (141)
T TIGR00880        88 ALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAA  130 (141)
T ss_pred             HHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHH
Confidence            3566677777888888888888888888766655544443333

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=87.47  E-value=3.7  Score=40.66  Aligned_cols=79  Identities=13%  Similarity=0.204  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHhhhhcchhhHHH-HHHHhCCCCChhHHHHHHHHHHH-HHHHHHHhHHhhhhhh--chhHHHHHhHHHH
Q 018408           89 VLIASMSNFLFGYHIGVMNGPIVS-IAKELGFEGNPILEGLVVSIFIA-GAFVGSISSGSLADKL--GCRRTFQIDTIPL  164 (356)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~--Grr~~~~~~~~~~  164 (356)
                      .+...++..+..+....+.+++|. +.++||.  +++.+..+.....+ +.++|.+++|++..|+  +.|....+.++..
T Consensus       394 f~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~--sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~  471 (735)
T KOG3626|consen  394 FMLVVLASVIESLAITGYITFLPKYLETQFGI--SASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCS  471 (735)
T ss_pred             HHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCC--CHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHH
Confidence            555666666676777777777774 4567888  55556676655544 4578899999999986  4444444444444


Q ss_pred             HHHHH
Q 018408          165 ILGAI  169 (356)
Q Consensus       165 ~i~~~  169 (356)
                      .+..+
T Consensus       472 ~l~l~  476 (735)
T KOG3626|consen  472 VLSLL  476 (735)
T ss_pred             HHHHH
Confidence            44333

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=87.08  E-value=3.5  Score=36.27  Aligned_cols=75  Identities=16%  Similarity=0.061  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhcc
Q 018408          162 IPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPA  236 (356)
Q Consensus       162 ~~~~i~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l  236 (356)
                      ++..+.-.+..+.++++..++..+.-|+..|..+.-..--+.+-.++++|-.+|+...++-.+|..++.+++-.+
T Consensus       327 l~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl  401 (409)
T KOG3880|consen  327 LLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL  401 (409)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence            333444445567788888888889999988888888877778778889999999999999999999988887654

>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length

Probab=86.68  E-value=17  Score=30.11  Aligned_cols=39  Identities=15%  Similarity=0.159  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHHhHHhhh---hhhchhHHHHHhHHHHHHHH
Q 018408          130 VSIFIAGAFVGSISSGSLA---DKLGCRRTFQIDTIPLILGA  168 (356)
Q Consensus       130 ~~~~~~~~~~~~~~~g~l~---dr~Grr~~~~~~~~~~~i~~  168 (356)
                      .....+++.+|..+++.+.   .+..+|+.....+.+..+..
T Consensus        52 ~~~~i~~F~~G~~~~~~i~~~~~~~~~~~~~~~~l~~~~~ll   93 (209)
T PF06912_consen   52 YLLAILSFILGAFLAGLIVRRSRRRRRRRWYRILLLLEAILL   93 (209)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH
Confidence            3444555667777777772   23334444444443333333

The function of this family is unknown although a few members are thought to be membrane proteins.

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=86.53  E-value=24  Score=31.80  Aligned_cols=95  Identities=18%  Similarity=0.209  Sum_probs=59.3

Q ss_pred             hHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHH-------HHHHH--hhhHHH
Q 018408          109 PIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA-------IISAQ--AHSLDE  179 (356)
Q Consensus       109 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~-------~~~~~--~~~~~~  179 (356)
                      .+..+...+.= ..-.+.+.+.+.|...+.+|+...-++.|.--.-+.+..-.++..++.       +.++.  .++-+.
T Consensus        29 al~tLatyLlG-~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~V  107 (508)
T COG4262          29 ALGTLATYLLG-GGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSRLV  107 (508)
T ss_pred             HHHHHHHHhcC-CceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHHH
Confidence            34444555421 144567888999999999999988888775433333322222222221       11221  245667


Q ss_pred             HHHHHHHHHhhhhhhhhHHHHHHHh
Q 018408          180 MLWGRFLVGLGIGVNTVLVPIYISE  204 (356)
Q Consensus       180 ~~~~~~l~G~~~g~~~~~~~~~~~e  204 (356)
                      ++++-+++|.-.|.-.|..+.++..
T Consensus       108 ly~lt~vIG~LVG~EiPL~mrml~~  132 (508)
T COG4262         108 LYALTAVIGVLVGAEIPLLMRMLQR  132 (508)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHH
Confidence            7888899999999998988887765

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=86.50  E-value=8.6  Score=32.95  Aligned_cols=101  Identities=14%  Similarity=0.134  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHHHHHHhHHhhhhh-hchhHHHHH----hHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHhhhhhhhh
Q 018408          127 GLVVSIFIAGAFVGSISSGSLADK-LGCRRTFQI----DTIPLILGAIISAQA-----HSLDEMLWGRFLVGLGIGVNTV  196 (356)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~g~l~dr-~Grr~~~~~----~~~~~~i~~~~~~~~-----~~~~~~~~~~~l~G~~~g~~~~  196 (356)
                      .....++..|..+|.+..|.+... +-||+.+..    +.++.++..++.+..     .+...+++.-++.|++.=+.++
T Consensus       144 ~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~  223 (267)
T PF07672_consen  144 PIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQG  223 (267)
T ss_pred             HHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhH
Confidence            445566677777787777777764 455554432    233344433332111     1355677778888887655566


Q ss_pred             HHHHHHHhhcCCCccchhHHHhHHHHHHHHHH
Q 018408          197 LVPIYISEVAPTKYRGSLGTLCQVGTCLGIIT  228 (356)
Q Consensus       197 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~  228 (356)
                      +....-.|. +...+-+..-.+...+.+|.++
T Consensus       224 ViL~lPhEy-K~~~pk~ig~~Fg~iWGfGY~~  254 (267)
T PF07672_consen  224 VILNLPHEY-KGYNPKKIGIQFGLIWGFGYIF  254 (267)
T ss_pred             HHhcChhhh-cCCCcceehhHHHHHHHHHHHH
Confidence            555444443 2222222222344455555443

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=85.26  E-value=24  Score=30.66  Aligned_cols=133  Identities=19%  Similarity=0.210  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHHHHHHHhHHhhhhhhchh--HHHHHhHHHHHHHHHHHHHh----h---hHHHHHHHHHHHHhhhhhhhh
Q 018408          126 EGLVVSIFIAGAFVGSISSGSLADKLGCR--RTFQIDTIPLILGAIISAQA----H---SLDEMLWGRFLVGLGIGVNTV  196 (356)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr--~~~~~~~~~~~i~~~~~~~~----~---~~~~~~~~~~l~G~~~g~~~~  196 (356)
                      -|.+.+.+.+...+|+-+..++..|-..|  ..+.+..++.+....+....    +   +...-+++..+.-.+.|..+|
T Consensus       284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwP  363 (454)
T KOG4332|consen  284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWP  363 (454)
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcch
Confidence            57888888888888888877777665443  33444444433333322221    1   222335566667777888999


Q ss_pred             HHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHHHHHH
Q 018408          197 LVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILAL  259 (356)
Q Consensus       197 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~  259 (356)
                      ...-+-.++.|.+.|+..+.++..-..+-..++-.. -...+...+-|..|-++.+...++.+
T Consensus       364 SimkmRsqyIPEearstimNfFRvPLnifvClvLyn-lh~~~~p~~tr~mf~icS~~~~~a~i  425 (454)
T KOG4332|consen  364 SIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYN-LHVDAFPTTTRNMFGICSAFLFVASI  425 (454)
T ss_pred             HHHHHHHhhCCHHHHhhhhhheechhhHhhhhhhee-cccccCccccchhhhhhHHHHHHHHH
Confidence            999999999999999999988755444333222111 00111111256677777666655543

>TIGR00806 rfc RFC reduced folate carrier

Probab=84.70  E-value=15  Score=34.75  Aligned_cols=95  Identities=8%  Similarity=-0.083  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHHHHHHHHhHHhhhhhhchh--HHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 018408          126 EGLVVSIFIAGAFVGSISSGSLADKLGCR--RTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYIS  203 (356)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~  203 (356)
                      .|..-++..+..+++.+..|++-.+..+.  ..+.+..++.+...++++..+|.+..+++.++.+.......+....-++
T Consensus       300 NG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t~~Iw~~Y~~yvlf~~~y~flitia~~~iA  379 (511)
T TIGR00806       300 NGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQSHDIWVLYVTYVLFRGIYQFLVPIATFQIA  379 (511)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556666677788889999886666442  3333344555555666777889999999999998888888888888888


Q ss_pred             hhcCCCccchhHHHhHH
Q 018408          204 EVAPTKYRGSLGTLCQV  220 (356)
Q Consensus       204 e~~p~~~r~~~~~~~~~  220 (356)
                      .....+.-|...|+.++
T Consensus       380 ~~L~~~~~aLvFGiNtf  396 (511)
T TIGR00806       380 SSLSKELCALVFGINTF  396 (511)
T ss_pred             HHhcccceEEEEecHHH
Confidence            87777766888877654

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=82.79  E-value=6.8  Score=28.21  Aligned_cols=26  Identities=23%  Similarity=0.166  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHHhHHhhhhhh-chhHH
Q 018408          131 SIFIAGAFVGSISSGSLADKL-GCRRT  156 (356)
Q Consensus       131 ~~~~~~~~~~~~~~g~l~dr~-Grr~~  156 (356)
                      +.-+++.++-....||+.||| |-++.
T Consensus        49 ssefIsGilVGa~iG~llD~~agTsPw   75 (116)
T COG5336          49 SSEFISGILVGAGIGWLLDKFAGTSPW   75 (116)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence            334445555556678999986 44433

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=82.23  E-value=46  Score=31.55  Aligned_cols=71  Identities=15%  Similarity=0.082  Sum_probs=49.7

Q ss_pred             HHHHHhhhhhhhhHHHHHHHhhcCC-CccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHH
Q 018408          184 RFLVGLGIGVNTVLVPIYISEVAPT-KYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGF  255 (356)
Q Consensus       184 ~~l~G~~~g~~~~~~~~~~~e~~p~-~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~  255 (356)
                      -++.|+........--..+.+.+|. ++|...+|-++...++..++..++++.+....| |.....+.-++.+
T Consensus       273 vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~G-w~~~a~i~Pii~l  344 (472)
T TIGR00769       273 VIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYG-WLTAALITPLVML  344 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHH
Confidence            3445566666666666777888875 568888888888888888777777777878777 8876655433333

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	356
4gby_A	491	The Structure Of The Mfs (Major Facilitator Superfa		3e-14

>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491

Iteration: 1
 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 105/247 (42%), Gaps = 31/247 (12%)
Query: 86  FPHVLIASMSNFLFGYHIGVMNGPIVSIA------KELGFEGNPILEGLVVSIFIAGAFV 139
           F   L+A++   LFGY   V++G + S+       + L       L G  V+  + G  +
Sbjct: 11  FSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCII 70
Query: 140 GSISSGSLADKLGCRRTFQIDTIPLILGAIISAQ------------------AHSLDEML 181
           G    G  +++ G R + +I  +   +  + SA                   A  + E +
Sbjct: 71  GGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFV 130
Query: 182 WGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLG--IITSLFLGIPAEDD 239
             R + G+G+G+ ++L P+YI+E+AP   RG L +  Q     G  ++  +   I    D
Sbjct: 131 IYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGD 190
Query: 240 PHW-----WRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEIN 294
             W     WR M     +P  +  + +    ESPRWL   G    A+ ++  + G +   
Sbjct: 191 ASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLAT 250
Query: 295 KAIEEFQ 301
           +A++E +
Sbjct: 251 QAVQEIK 257

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	356
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	9e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	7e-05
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	2e-04

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Length = 438

 Score = 52.6 bits (126), Expect = 9e-08
 Identities = 35/152 (23%), Positives = 60/152 (39%), Gaps = 8/152 (5%)

Query: 86  FPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSG 145
            P  L+ S+  FL+      +N  ++   ++  F       GL+ S F  G F+  I +G
Sbjct: 26  IPFALLCSLF-FLWAV-ANNLNDILLPQFQQA-FTLTNFQAGLIQSAFYFGYFIIPIPAG 82

Query: 146 SLADKLGCRRTFQIDTIPLILGAII---SAQAHSLDEMLWGRFLVGLGIGV-NTVLVPIY 201
            L  KL  +           LGA +   +A+  +    L G F++  G+G   T   P +
Sbjct: 83  ILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANP-F 141

Query: 202 ISEVAPTKYRGSLGTLCQVGTCLGIITSLFLG 233
           ++ + P         L Q     G I ++  G
Sbjct: 142 VTVLGPESSGHFRLNLAQTFNSFGAIIAVVFG 173

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 1e-05
 Identities = 54/388 (13%), Positives = 96/388 (24%), Gaps = 119/388 (30%)

Query: 2   RVATVLHHPVRPVPSY---RSTLFTPSPAKMKTLRFSFSHRSTKFKVLAAKKQLPELRSR 58
            + T    P      Y   R  L+  +        F+  + S     L  ++ L ELR  
Sbjct: 97  PIKTEQRQPSMMTRMYIEQRDRLYNDNQ------VFAKYNVSRLQPYLKLRQALLELRPA 150

Query: 59  KQ----------KQDGENLLSRDQKAEEGFDLG--WLPAF-----PHVLIASMSNFLFGY 101
           K           K      +    K +   D    WL        P  ++  +   L  Y
Sbjct: 151 KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL-NLKNCNSPETVLEMLQKLL--Y 207

Query: 102 HIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDT 161
            I          +       N  L                    S+  +L  RR  +   
Sbjct: 208 QIDPNWTSRSDHSS------NIKLR-----------------IHSIQAEL--RRLLKSKP 242

Query: 162 IPLILGAIISAQAHSLDEM----LWGRFLVG---L----GIGVNTVLVPIYISEVAPTKY 210
               L  ++      L  +     W  F +    L       V   L     + ++   +
Sbjct: 243 YENCL--LV------LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294

Query: 211 RGSLG---TLCQVGTCLGIITS-----------LFLGIPAE---DDP-HW--WRTMLY-- 248
             +L        +   L                  L I AE   D    W  W+ +    
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354

Query: 249 --------IASL-PGFILALGMQFTVESPRWLCKGGMLNDAK---AVIANLWGESEINKA 296
                   +  L P     +  + +V              A     +++ +W +   +  
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSV----------FPPSAHIPTILLSLIWFDVIKSDV 404

Query: 297 IEEFQLVIKKDGSDLDSQWSELLEEPHS 324
           +     + K   S ++ Q  E      S
Sbjct: 405 MVVVNKLHKY--SLVEKQPKESTISIPS 430

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375

 Score = 43.4 bits (103), Expect = 7e-05
 Identities = 16/86 (18%), Positives = 37/86 (43%), Gaps = 2/86 (2%)

Query: 112 SIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIIS 171
            +A++L           V+  ++    V  +  G ++D++G R    +     +L  +++
Sbjct: 25  DMARDLN--VREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA 82

Query: 172 AQAHSLDEMLWGRFLVGLGIGVNTVL 197
               SL  ++    + G+G GV  V+
Sbjct: 83  VTTSSLTVLIAASAMQGMGTGVGGVM 108

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 31/170 (18%), Positives = 52/170 (30%), Gaps = 18/170 (10%)

Query: 111 VSIAK----ELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLIL 166
            ++A     E GF  +    G  +S             GS++D+   R         LIL
Sbjct: 47  FALAMPYLVEQGF--SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFL---PAGLIL 101

Query: 167 GAIISA-------QAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQ 219
            A +            S+  M    FL G   G+        +      K RG + ++  
Sbjct: 102 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWN 161

Query: 220 VGTCLG-IITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQFTVESP 268
               +G  I  L   +        W   LY+ +    ++AL     +   
Sbjct: 162 CAHNVGGGIPPLLFLLGMAWFND-WHAALYMPAFCAILVALFAFAMMRDT 210

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	356
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.96
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.92
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.91
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.89
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.81
2xut_A	524	Proton/peptide symporter family protein; transport	99.75
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.6
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.55
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.52
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.51
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.49
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.39
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.14
2xut_A	524	Proton/peptide symporter family protein; transport	98.93

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.96  E-value=2e-27  Score=223.38  Aligned_cols=209  Identities=24%  Similarity=0.481  Sum_probs=180.8

Q ss_pred             HHHHHHHHHHHHHHhhhhcchhhHHHHHHHhCCCC------ChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHh
Q 018408           87 PHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEG------NPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQID  160 (356)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~------~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~  160 (356)
                      ...++++++.+..||+...++..+|.+.++++.+.      ++...+++.+.+.+|+.+|++++|+++||+|||++++++
T Consensus        12 ~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~   91 (491)
T 4gc0_A           12 SITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIA   91 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            34556678889999999999999999988875421      234578999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH------------------HhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHH
Q 018408          161 TIPLILGAIISA------------------QAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGT  222 (356)
Q Consensus       161 ~~~~~i~~~~~~------------------~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~  222 (356)
                      .+++.++.++++                  +++|++.++++|+++|++.|+..+..+.+++|+.|+++|++..++.+.+.
T Consensus        92 ~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~  171 (491)
T 4gc0_A           92 AVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAI  171 (491)
T ss_dssp             HHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhh
Confidence            999999999988                  47899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhccCCC-------CchhHHHHHHhHHHHHHHHHHhhcccCChHHHHhcCCHHHHHHHHHHHcCCcchHH
Q 018408          223 CLGIITSLFLGIPAEDD-------PHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINK  295 (356)
Q Consensus       223 ~~g~~~~~~i~~~l~~~-------~~~w~~~~~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (356)
                      .+|.++++.++..+...       ..+|++.+.+.+++.++..+..++.||+|+|+..+++.+++.+.+++.++++..++
T Consensus       172 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~  251 (491)
T 4gc0_A          172 IFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQ  251 (491)
T ss_dssp             HHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHH
Confidence            99999988877654432       12388888888888888888889999999999999999999999988766544333

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.92  E-value=7.2e-24  Score=196.13  Aligned_cols=231  Identities=16%  Similarity=0.164  Sum_probs=185.3

Q ss_pred             hHHHHHHHHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHH
Q 018408           85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL  164 (356)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~  164 (356)
                      ++..+..+++..+..++......+..|.+.+++|.  +..+.+++.+.+.+++.++.++.|+++||+|||++++++.++.
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~  101 (438)
T 3o7q_A           24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTL--TNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY  101 (438)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHH
Confidence            34555666777788888888888889999999999  5667999999999999999999999999999999999999999


Q ss_pred             HHHHHHH---HHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccC-CCC
Q 018408          165 ILGAIIS---AQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAE-DDP  240 (356)
Q Consensus       165 ~i~~~~~---~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~-~~~  240 (356)
                      +++.+++   +++++++.++++|++.|++.+...+....+++|++|+++|++++++.+.+..+|..+++.+++.+. +..
T Consensus       102 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~  181 (438)
T 3o7q_A          102 ALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV  181 (438)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSS
T ss_pred             HHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            9999998   788999999999999999999999999999999999999999999999999999999999999888 555


Q ss_pred             ch------------------------hHHHHHHhHHHHHHHHHHhhc--ccCChHHHHhcCCHHHHHHHHHHHcCCcchH
Q 018408          241 HW------------------------WRTMLYIASLPGFILALGMQF--TVESPRWLCKGGMLNDAKAVIANLWGESEIN  294 (356)
Q Consensus       241 ~~------------------------w~~~~~~~~~~~~~~~~~~~~--~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (356)
                      +.                        |++.|++.+++.++..+..++  .||+++.    .              +++  
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~----~--------------~~~--  241 (438)
T 3o7q_A          182 PHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD----N--------------HSD--  241 (438)
T ss_dssp             CCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT----C--------------CCC--
T ss_pred             ccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc----c--------------ccc--
Confidence            54                        899998776666555544433  3444210    0              000  


Q ss_pred             HHHHHHHHHHHhcCCCCccchhhhcccCcchhhHHHHHHHHHHHHHHHHHHHhh
Q 018408          295 KAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGDGALASLLVGVTNFAGLR  348 (356)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (356)
                                 +++++...++++++++|.++...+..........+...+.+.+
T Consensus       242 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (438)
T 3o7q_A          242 -----------AKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRY  284 (438)
T ss_dssp             -----------SSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----------ccccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       0111112467788899999988887766555555555555555

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.91  E-value=4.5e-24  Score=198.14  Aligned_cols=183  Identities=14%  Similarity=0.072  Sum_probs=161.0

Q ss_pred             hHHHHHHHHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHH
Q 018408           85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL  164 (356)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~  164 (356)
                      +++.+..+.++.+..++....+.+.+|.+.+++ .  +..+.+++.+++.+++.++.+++|+++||+|||++++++.++.
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~  102 (451)
T 1pw4_A           26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-F--SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA  102 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-T--CSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c--cHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHH
Confidence            345566777778888888888888999999998 7  4555999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH----hhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCC
Q 018408          165 ILGAIISAQ----AHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP  240 (356)
Q Consensus       165 ~i~~~~~~~----~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~  240 (356)
                      +++.+++++    +++++.++++|++.|++.+...+....++.|++|+++|++++++.+.+..+|.+++|.+++.+.+..
T Consensus       103 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  182 (451)
T 1pw4_A          103 AAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF  182 (451)
T ss_dssp             HHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999    9999999999999999999999999999999999999999999999999999999999998876554


Q ss_pred             chhHHHHHHhHHHHHHHHH-HhhcccCChHH
Q 018408          241 HWWRTMLYIASLPGFILAL-GMQFTVESPRW  270 (356)
Q Consensus       241 ~~w~~~~~~~~~~~~~~~~-~~~~~~e~p~~  270 (356)
                      ++||+.|++.+++.++..+ ..+++||+|+.
T Consensus       183 g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~  213 (451)
T 1pw4_A          183 NDWHAALYMPAFCAILVALFAFAMMRDTPQS  213 (451)
T ss_dssp             CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTT
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhhccCCHhh
Confidence            3499999998877766544 45668887643

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.89  E-value=1.6e-22  Score=183.33  Aligned_cols=176  Identities=14%  Similarity=0.190  Sum_probs=158.2

Q ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHH
Q 018408           90 LIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAI  169 (356)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~  169 (356)
                      +.+++..+..++....+.+.+|.+.+++|.  +..+.+++.+.+.+++.++.++.|+++||+|||+++.++.++.+++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~   80 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIADMARDLNV--REGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATL   80 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSSS--TTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH
Confidence            445666677777888888889999999998  566799999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHH
Q 018408          170 ISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYI  249 (356)
Q Consensus       170 ~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~  249 (356)
                      +.+++++++.+++.|++.|++.+...+....++.|++|+++|++++++.+.+..+|..++|.+++.+.+..+ |++.|++
T Consensus        81 ~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~  159 (375)
T 2gfp_A           81 VAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN-WRACYLF  159 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHH-HHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc-HHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999988767 9999998


Q ss_pred             hHHHHHHHHH-HhhcccCCh
Q 018408          250 ASLPGFILAL-GMQFTVESP  268 (356)
Q Consensus       250 ~~~~~~~~~~-~~~~~~e~p  268 (356)
                      .++..++..+ ..+++||++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~  179 (375)
T 2gfp_A          160 LLVLCAGVTFSMARWMPETR  179 (375)
T ss_dssp             HHHHHHHHHCCCCCSSCCCS
T ss_pred             HHHHHHHHHHHHHHHCcccC
Confidence            8877776665 445577764

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.81  E-value=8.1e-19  Score=164.73  Aligned_cols=166  Identities=16%  Similarity=0.198  Sum_probs=140.6

Q ss_pred             HHHHHHHhhhhcchhhH-HHHHHH-----hCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhh-hchhHHHHHhHHHHHH
Q 018408           94 MSNFLFGYHIGVMNGPI-VSIAKE-----LGFEGNPILEGLVVSIFIAGAFVGSISSGSLADK-LGCRRTFQIDTIPLIL  166 (356)
Q Consensus        94 ~~~~~~~~~~~~~~~~~-~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~i  166 (356)
                      +..+...+........+ +++.++     +|.  +..+.+++.+.+.+++.++.+++|+++|| +|||+++.++.++.++
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~   97 (491)
T 4aps_A           20 MTEMWERFSYYGMRAILLYYMWFLISTGDLHI--TRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIML   97 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCS--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccchhhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence            33333334333333333 455555     788  67779999999999999999999999999 8999999999999999


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCc--cchhHHHhHHHHHHHHHHHHHhhhccCCCCchhH
Q 018408          167 GAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKY--RGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWR  244 (356)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~--r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~  244 (356)
                      +.++++++++++.++++|++.|++.+...+....+++|++|+++  |+.++++++.+..+|..++|.+++.+.+..+ |+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-~~  176 (491)
T 4aps_A           98 GHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAG-YH  176 (491)
T ss_dssp             HHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC-HH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhh-HH
Confidence            99999999999999999999999999999999999999999988  7778888999999999999999999988777 99


Q ss_pred             HHHHHhHHHHHHHHHHhh
Q 018408          245 TMLYIASLPGFILALGMQ  262 (356)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~  262 (356)
                      +.|++.++..++..+..+
T Consensus       177 ~~f~~~~~~~~~~~~~~~  194 (491)
T 4aps_A          177 VAFSLAAIGMFIGLLVYY  194 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999998777666655443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.75  E-value=2.5e-17  Score=155.87  Aligned_cols=164  Identities=15%  Similarity=0.106  Sum_probs=139.1

Q ss_pred             HHHHhhhhcchhhH-HHHHHHhC------CCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhh-chhHHHHHhHHHHHHHH
Q 018408           97 FLFGYHIGVMNGPI-VSIAKELG------FEGNPILEGLVVSIFIAGAFVGSISSGSLADKL-GCRRTFQIDTIPLILGA  168 (356)
Q Consensus        97 ~~~~~~~~~~~~~~-~~~~~~~g------~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~i~~  168 (356)
                      +...+......+.+ +++.+++|      +  +..+.+++.+++.+++.++.+++|+++||+ |||+++.++.++.+++.
T Consensus        22 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~--s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~   99 (524)
T 2xut_A           22 ACERFSFYGMRNILTPFLMTALLLSIPEEL--RGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGH   99 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCSSCCSSST--TTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccccccc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            33333333333444 45667788      7  555699999999999999999999999999 99999999999999999


Q ss_pred             HHHHHhh-hHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHH---hHHHHHHHHHHHHHhhhccCCCCchhH
Q 018408          169 IISAQAH-SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTL---CQVGTCLGIITSLFLGIPAEDDPHWWR  244 (356)
Q Consensus       169 ~~~~~~~-~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~---~~~~~~~g~~~~~~i~~~l~~~~~~w~  244 (356)
                      ++.++++ +++.++++|++.|++.+...+....++.|++|+++|++..+.   ++.+..+|.+++|.+++.+.+..+ |+
T Consensus       100 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-~~  178 (524)
T 2xut_A          100 AFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFG-AA  178 (524)
T ss_dssp             HHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSC-HH
T ss_pred             HHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-HH
Confidence            9999998 999999999999999999999999999999999999877666   889999999999999999888777 99


Q ss_pred             HHHHHhHHHHHHHHHHhhc
Q 018408          245 TMLYIASLPGFILALGMQF  263 (356)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~  263 (356)
                      +.|++.++..++..+..++
T Consensus       179 ~~f~~~~~~~~~~~~~~~~  197 (524)
T 2xut_A          179 VAFGIPGVLMFVATVFFWL  197 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999988777666555444

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.60  E-value=2.8e-14  Score=132.04  Aligned_cols=172  Identities=14%  Similarity=0.094  Sum_probs=138.0

Q ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHH-hCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhh--chhHHHHHhHHHHH-
Q 018408           90 LIASMSNFLFGYHIGVMNGPIVSIAKE-LGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKL--GCRRTFQIDTIPLI-  165 (356)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--Grr~~~~~~~~~~~-  165 (356)
                      +...+..+.............|.+.++ +|.  +..+.+++.+...++..++.++.|+++||+  |||+.+.++.++.. 
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~  332 (451)
T 1pw4_A          255 WYIAIANVFVYLLRYGILDWSPTYLKEVKHF--ALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVT  332 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHBTTBSCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence            334444444444444455566666555 787  667789999999999999999999999999  99999888777766 


Q ss_pred             HHHHHHHHh--hhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHH-HHHHHHHhhhccCCCCch
Q 018408          166 LGAIISAQA--HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCL-GIITSLFLGIPAEDDPHW  242 (356)
Q Consensus       166 i~~~~~~~~--~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~-g~~~~~~i~~~l~~~~~~  242 (356)
                      ++.++..+.  .+.+.+++..++.|++.+...+....++.|.+|+++||+++++.+....+ |..++|.+.+.+.+..+ 
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-  411 (451)
T 1pw4_A          333 IATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-  411 (451)
T ss_dssp             HHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-
T ss_pred             HHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence            666555555  36677777888899998888888899999999999999999999999999 99999999999998888 


Q ss_pred             hHHHHHHhHHHHHHHHHHhhcc
Q 018408          243 WRTMLYIASLPGFILALGMQFT  264 (356)
Q Consensus       243 w~~~~~~~~~~~~~~~~~~~~~  264 (356)
                      |+..|++.++..++..+..+++
T Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          412 WDGGFMVMIGGSILAVILLIVV  433 (451)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHH
Confidence            9999998888777776655543

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.55  E-value=2.3e-14  Score=134.24  Aligned_cols=170  Identities=17%  Similarity=0.071  Sum_probs=117.1

Q ss_pred             HHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhh
Q 018408           96 NFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAH  175 (356)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~  175 (356)
                      .+.............+.+.+..+.  +............+...++.++.+++.||+|||+.++.+....+++.+..+...
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~  363 (491)
T 4gc0_A          286 IFQQFVGINVVLYYAPEVFKTLGA--STDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAF  363 (491)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHSSC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhHHHhcchHHHHhcCC--CccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHH
Confidence            333444444555566778888776  444455666777788899999999999999999999998888888776655431


Q ss_pred             -----hHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCc-----hhHH
Q 018408          176 -----SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPH-----WWRT  245 (356)
Q Consensus       176 -----~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~-----~w~~  245 (356)
                           +...++...+..+....+..+..+.+.+|.+|++.|++++|+......+|+++++.+.+.+.+...     ++.+
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~  443 (491)
T 4gc0_A          364 YTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGF  443 (491)
T ss_dssp             HTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCH
T ss_pred             hcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence                 222222222222222333456778899999999999999999999999999988887766544211     1445


Q ss_pred             HHHHhHHHHHHHHH-HhhcccCC
Q 018408          246 MLYIASLPGFILAL-GMQFTVES  267 (356)
Q Consensus       246 ~~~~~~~~~~~~~~-~~~~~~e~  267 (356)
                      .|++.++++++..+ .++++|||
T Consensus       444 ~~~i~~~~~~~~~i~~~~~~PET  466 (491)
T 4gc0_A          444 SYWIYGCMGVLAALFMWKFVPET  466 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHHHHHHHHHHheecCC
Confidence            66666666665554 56779999

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.52  E-value=1.3e-15  Score=140.05  Aligned_cols=167  Identities=13%  Similarity=0.056  Sum_probs=107.5

Q ss_pred             HHHHhhhhcchhhHHH-HHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHH---H
Q 018408           97 FLFGYHIGVMNGPIVS-IAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIIS---A  172 (356)
Q Consensus        97 ~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~---~  172 (356)
                      +..........+.+|. +.+++|+  +..+.+++.+.+.+++.++++++|+++||+|||++++++..+.+++....   .
T Consensus        17 ~~~~~~~~~~~~~~~~~l~~~~g~--s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~   94 (417)
T 2cfq_A           17 FFYFFIMGAYFPFFPIWLHDINHI--SKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFI   94 (417)
T ss_dssp             HHHHHHHHHHTTTHHHHHHTTTCC--CTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333444555655 4556888  45558999999999999999999999999999999998877765532211   2


Q ss_pred             HhhhH-HHHHHHHHHHHhhhhhhhhHHHHHHHhhcCC--CccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHH
Q 018408          173 QAHSL-DEMLWGRFLVGLGIGVNTVLVPIYISEVAPT--KYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYI  249 (356)
Q Consensus       173 ~~~~~-~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~--~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~  249 (356)
                      +.+.. ..++..+++.|++.+...+.....+.++.++  ++|+...+....+..+|..++|.+++.+.+ .+ |++.|++
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~-~~~~f~~  172 (417)
T 2cfq_A           95 FGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-IN-NQFVFWL  172 (417)
T ss_dssp             HHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HC-SHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hc-hhHHHHH
Confidence            22211 1123445555554444433333333333332  356777777777788888899998888765 34 8999988


Q ss_pred             hHHHHHHHHHHhhcccCC
Q 018408          250 ASLPGFILALGMQFTVES  267 (356)
Q Consensus       250 ~~~~~~~~~~~~~~~~e~  267 (356)
                      .++..++..+..++.+|+
T Consensus       173 ~~~~~~~~~~~~~~~~~~  190 (417)
T 2cfq_A          173 GSGCALILAVLLFFAKTD  190 (417)
T ss_dssp             TTTTTTTHHHHSCSSCCC
T ss_pred             HHHHHHHHHHHHHHcCcc
Confidence            776655555555444443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.51  E-value=1.3e-13  Score=127.19  Aligned_cols=155  Identities=11%  Similarity=-0.028  Sum_probs=121.8

Q ss_pred             hcchhhHHHH-HHH-hCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhhhHHHHH
Q 018408          104 GVMNGPIVSI-AKE-LGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEML  181 (356)
Q Consensus       104 ~~~~~~~~~~-~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~  181 (356)
                      .......|.+ .++ +|.  +..+.+++.+.+.++..++.++.|+++||+|||+.+.++.++.+++.++..+.++...++
T Consensus       275 ~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (438)
T 3o7q_A          275 TACWSYLIRYAVEEIPGM--TAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLI  352 (438)
T ss_dssp             HHHHHHHHHHHHHHSTTC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred             HHHHHHHHHHhhhccCCc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence            3334445544 444 588  667789999999999999999999999999999999999999999888888887776554


Q ss_pred             HHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHHHHHHHh
Q 018408          182 WGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGM  261 (356)
Q Consensus       182 ~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~  261 (356)
                      . .++.|++.+...+....+..|.+|++ ++.+.++.. ...+|..++|.+.+.+.+..++++..|++.++..++..+..
T Consensus       353 ~-~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  429 (438)
T 3o7q_A          353 A-LTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFA  429 (438)
T ss_dssp             H-HHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            4 48889999999999999999999976 888888776 55689999999999988876547777777655544444433


Q ss_pred             hc
Q 018408          262 QF  263 (356)
Q Consensus       262 ~~  263 (356)
                      ++
T Consensus       430 ~~  431 (438)
T 3o7q_A          430 RF  431 (438)
T ss_dssp             TT
T ss_pred             HH
Confidence            33

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.49  E-value=1.2e-13  Score=126.78  Aligned_cols=143  Identities=12%  Similarity=0.005  Sum_probs=118.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHh
Q 018408          125 LEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISE  204 (356)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e  204 (356)
                      ..++..++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+....+++|
T Consensus       260 ~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  339 (417)
T 2cfq_A          260 VFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITS  339 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35677777778888999999999999999999998888888877777777777777777788888877777777889999


Q ss_pred             hcCCCccchhHHH-hHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHHHHHHH-hhcccCCh
Q 018408          205 VAPTKYRGSLGTL-CQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALG-MQFTVESP  268 (356)
Q Consensus       205 ~~p~~~r~~~~~~-~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~e~p  268 (356)
                      .+|++.||++.++ ++....+|..++|.+++.+.+..+ +...|.+.+++.+++.+. +++.+|++
T Consensus       340 ~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~~~~~~~~  404 (417)
T 2cfq_A          340 QFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLISVFTLSGPG  404 (417)
T ss_dssp             HSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH-HHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred             HCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence            9999999999998 588889999999999999888766 888888887777776654 34466654

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.39  E-value=4e-12  Score=119.01  Aligned_cols=154  Identities=11%  Similarity=-0.022  Sum_probs=114.8

Q ss_pred             chhhHHHHH-HHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHH-----HhHHHHHHHHHHHHHhh----
Q 018408          106 MNGPIVSIA-KELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQ-----IDTIPLILGAIISAQAH----  175 (356)
Q Consensus       106 ~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~-----~~~~~~~i~~~~~~~~~----  175 (356)
                      ....++.+. +.++.+.  ...+++.+...++..++.++.|++.||+|||+...     ++.++.+++.++.....    
T Consensus       302 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (491)
T 4aps_A          302 GSVVLATFAAERVDSSW--FPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYG  379 (491)
T ss_dssp             GGTHHHHHHHHSCCCSS--SCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCC
T ss_pred             ccHHHHHHHHHHhccCc--cCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            344444444 4455532  33567777888888899999999999999986554     66677777666655543    


Q ss_pred             -----hHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHh
Q 018408          176 -----SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIA  250 (356)
Q Consensus       176 -----~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~  250 (356)
                           +.+.+++..++.|++.+...+....++.|.+|++.|++++|+.+....+|..+++.+.+.+.+. + +.+.|++.
T Consensus       380 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~-~~~~~~~~  457 (491)
T 4aps_A          380 TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-S-EVAYFSYF  457 (491)
T ss_dssp             CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-S-TTHHHHHT
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-c-HHHHHHHH
Confidence                 6667777888999999998899999999999999999999999999999999999999888765 3 55667776


Q ss_pred             HHHHHHHHHHhhc
Q 018408          251 SLPGFILALGMQF  263 (356)
Q Consensus       251 ~~~~~~~~~~~~~  263 (356)
                      ++..++..+..++
T Consensus       458 ~~~~~~~~~~~~~  470 (491)
T 4aps_A          458 GLGSVVLGIVLVF  470 (491)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            6666655544433

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.14  E-value=1.5e-11  Score=110.96  Aligned_cols=156  Identities=16%  Similarity=0.066  Sum_probs=110.3

Q ss_pred             HHHHHHHHHHHHhhhhcchhhHHHH-HHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHH-HHH
Q 018408           89 VLIASMSNFLFGYHIGVMNGPIVSI-AKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIP-LIL  166 (356)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~-~~i  166 (356)
                      ++...+..+.............|.+ .+.+|.  +..+.+++.+...++..++.++.+++.||+|++.  ..+..+ ..+
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~  276 (375)
T 2gfp_A          201 FNCYLLMLIGGLAGIAAFEACSGVLMGAVLGL--SSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLA  276 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHH--HHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence            3334444444444444444444444 444777  5666899999999999999999999999999833  223322 222


Q ss_pred             HHH--HHHH--hhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCch
Q 018408          167 GAI--ISAQ--AHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHW  242 (356)
Q Consensus       167 ~~~--~~~~--~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~  242 (356)
                      +..  ....  .++.+.+++..++.|++.+...+....++.|.+| ++||++.++.+....+|..+++.+.+.+.+..+ 
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~-  354 (375)
T 2gfp_A          277 GLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQ-  354 (375)
T ss_dssp             SSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHH-
T ss_pred             HHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCc-
Confidence            222  2222  2366777778889999999999999999999998 889999999999999999999998888766544 


Q ss_pred             hHHHHHHh
Q 018408          243 WRTMLYIA  250 (356)
Q Consensus       243 w~~~~~~~  250 (356)
                      |...+++.
T Consensus       355 ~~~~~~~~  362 (375)
T 2gfp_A          355 GSLGLLMT  362 (375)
T ss_dssp             HHHHHHHH
T ss_pred             ccHHHHHH
Confidence            66666553

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.93  E-value=4.6e-09  Score=99.00  Aligned_cols=138  Identities=9%  Similarity=0.058  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHHHHHHHhHHhhh----hhhch----hHHHHHhHHHHHHHHHHHHHh---------hhHHHHHHHHHHHH
Q 018408          126 EGLVVSIFIAGAFVGSISSGSLA----DKLGC----RRTFQIDTIPLILGAIISAQA---------HSLDEMLWGRFLVG  188 (356)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~g~l~----dr~Gr----r~~~~~~~~~~~i~~~~~~~~---------~~~~~~~~~~~l~G  188 (356)
                      .+++.....++..++.++.+++.    +|.|+    ++.+.++.++.+++.++.++.         .+.+.+++..++.|
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  416 (524)
T 2xut_A          337 PAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLT  416 (524)
T ss_dssp             HHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHH
Confidence            45555555555666666666654    44443    245667777777777766653         25667777889999


Q ss_pred             hhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCc-hh---------HHHHHHhHHHHHHHH
Q 018408          189 LGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPH-WW---------RTMLYIASLPGFILA  258 (356)
Q Consensus       189 ~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~-~w---------~~~~~~~~~~~~~~~  258 (356)
                      ++.+...+....++.|.+|++.||+++|++++...+|..+++.+.+.+.+..+ +|         +..|++.+++.++..
T Consensus       417 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  496 (524)
T 2xut_A          417 FGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAA  496 (524)
T ss_dssp             HHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998876421 13         333566665555555


Q ss_pred             HHhhc
Q 018408          259 LGMQF  263 (356)
Q Consensus       259 ~~~~~  263 (356)
                      +..++
T Consensus       497 ~~~~~  501 (524)
T 2xut_A          497 IVFAL  501 (524)
T ss_dssp             HHHC-
T ss_pred             HHHHH
Confidence            44433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	356
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	4e-11
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	5e-08

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 61.6 bits (148), Expect = 4e-11
 Identities = 30/208 (14%), Positives = 59/208 (28%), Gaps = 6/208 (2%)

Query: 88  HVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSL 147
            + +     +   Y +       +    E GF    +  G  +S             GS+
Sbjct: 25  QIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDL--GFALSGISIAYGFSKFIMGSV 82

Query: 148 ADKLGCRRTFQIDTIPLILGAII----SAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYIS 203
           +D+   R       I      +          S+  M    FL G   G+        + 
Sbjct: 83  SDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMV 142

Query: 204 EVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQF 263
                K RG + ++      +G      L +      + W   LY+ +    ++AL    
Sbjct: 143 HWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFA 202

Query: 264 TVESPRWLCKGGMLNDAKAVIANLWGES 291
            +      C    + + K    + + E 
Sbjct: 203 MMRDTPQSCGLPPIEEYKNDYPDDYNEK 230

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 51.7 bits (122), Expect = 5e-08
 Identities = 15/208 (7%), Positives = 50/208 (24%), Gaps = 8/208 (3%)

Query: 87  PHVLIASMSNFLFGYHIGVMNGPI-VSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSG 145
            +  +  +  F + + +G       + +        +    G++ +     + +     G
Sbjct: 7   TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHI--SKSDTGIIFAAISLFSLLFQPLFG 64

Query: 146 SLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIG-----VNTVLVPI 200
            L+DKLG R+        +++             + +   +  +  G           P 
Sbjct: 65  LLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPA 124

Query: 201 YISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALG 260
             + +     R +                    +      +        +     +  L 
Sbjct: 125 VEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLL 184

Query: 261 MQFTVESPRWLCKGGMLNDAKAVIANLW 288
                ++P        +    +  +   
Sbjct: 185 FFAKTDAPSSATVANAVGANHSAFSLKL 212

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	356
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.91
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.61
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.56
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.47

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=1.7e-24  Score=198.18  Aligned_cols=245  Identities=13%  Similarity=0.063  Sum_probs=174.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHH
Q 018408           86 FPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLI  165 (356)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~  165 (356)
                      |..+..+.++++...++...++...|.+. ++|+  +..+.|++.+++.+++.++++++|+++||+|||+++.++.++.+
T Consensus        24 w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~--s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~  100 (447)
T d1pw4a_          24 WQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGF--SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAA  100 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTT--CSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence            44555566666777777677777778765 5788  45559999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhh----hHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCc
Q 018408          166 LGAIISAQAH----SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPH  241 (356)
Q Consensus       166 i~~~~~~~~~----~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~  241 (356)
                      ++.++++++.    ++..++++|++.|++.|...+....++.|++|+++|++++++.+.+..+|..+++.+++.+....+
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~  180 (447)
T d1pw4a_         101 AVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN  180 (447)
T ss_dssp             HHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC
T ss_pred             HHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhh
Confidence            9998887764    678899999999999999999999999999999999999999999999999999998887766554


Q ss_pred             hhHHHHHHhHHHHHHHHH-HhhcccCChHHHHhcCCHHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCccchhhhcc
Q 018408          242 WWRTMLYIASLPGFILAL-GMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLE  320 (356)
Q Consensus       242 ~w~~~~~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  320 (356)
                      +|++.+++.+++.++..+ .+++.+++|+....... +            +..++..++.++..+++...+....+.+++
T Consensus       181 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (447)
T d1pw4a_         181 DWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI-E------------EYKNDYPDDYNEKAEQELTAKQIFMQYVLP  247 (447)
T ss_dssp             CSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC-T------------TTCCC-------------CCTHHHHHHTSS
T ss_pred             cccccchhhhhhHHHHHHHHHHhcccchhhcccchh-h------------hhhhhcccchhhccccccchhhHHHHHHHc
Confidence            599999887776666554 44556665532111110 0            000011111111112222222356677888


Q ss_pred             cCcchhhHHHHHHHHHHHHHHHHHHH
Q 018408          321 EPHSRVAFIGDGALASLLVGVTNFAG  346 (356)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (356)
                      ++.++...+..........+...+..
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (447)
T d1pw4a_         248 NKLLWYIAIANVFVYLLRYGILDWSP  273 (447)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHhhhhhhhhhcchhhhh
Confidence            88887776666444444444443333

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=1e-15  Score=136.71  Aligned_cols=140  Identities=14%  Similarity=0.056  Sum_probs=123.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 018408          123 PILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYI  202 (356)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~  202 (356)
                      ....+...+...++..++..+.+++.||+|+|+.+.++.++.+++.++..+.++.+.+++..++.|++.+...+....++
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~  337 (417)
T d1pv7a_         258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI  337 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            33466677777888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCCccchhHHHh-HHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHHHHHHHhhc
Q 018408          203 SEVAPTKYRGSLGTLC-QVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQF  263 (356)
Q Consensus       203 ~e~~p~~~r~~~~~~~-~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~  263 (356)
                      .|.+|++.|++..++. ++...+|..++|.+.+.+.+..| ++..|++.+++.++..++.++
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~  398 (417)
T d1pv7a_         338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLISVF  398 (417)
T ss_dssp             HHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999975 67788999999999999999888 999998887777666554444

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=1.3e-14  Score=129.38  Aligned_cols=179  Identities=10%  Similarity=-0.022  Sum_probs=124.6

Q ss_pred             HHHHHHHHHHHHHHhhhhcchhhHHH-HHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHH
Q 018408           87 PHVLIASMSNFLFGYHIGVMNGPIVS-IAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLI  165 (356)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~  165 (356)
                      +..+.+.+..+...+......+.+|. +.+++|.  +..+.|++.+++.+++.+++++.|+++||+|||++++++..+..
T Consensus         7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~--s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~   84 (417)
T d1pv7a_           7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHI--SKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGML   84 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence            44566666666666776677777775 5677899  67789999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHhhhHHHH----HHHHHHHHhhhhhhhhHHHHHHHhhcCC--CccchhHHHhHHHHHHHHHHHHHhhhccCCC
Q 018408          166 LGAIISAQAHSLDEM----LWGRFLVGLGIGVNTVLVPIYISEVAPT--KYRGSLGTLCQVGTCLGIITSLFLGIPAEDD  239 (356)
Q Consensus       166 i~~~~~~~~~~~~~~----~~~~~l~G~~~g~~~~~~~~~~~e~~p~--~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~  239 (356)
                      ++..+..+..+....    ++.+++.+.+.+...........+..++  +.+....+........+..+++.+++.+.+.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  164 (417)
T d1pv7a_          85 VMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI  164 (417)
T ss_dssp             HTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc
Confidence            888888776655443    3444444544444444444333333322  3345566677778888888888888877665


Q ss_pred             CchhHHHHHHhHHHHHHHHHHhhcccCCh
Q 018408          240 PHWWRTMLYIASLPGFILALGMQFTVESP  268 (356)
Q Consensus       240 ~~~w~~~~~~~~~~~~~~~~~~~~~~e~p  268 (356)
                      .+ |+..+.......++..+..++.++++
T Consensus       165 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (417)
T d1pv7a_         165 NN-QFVFWLGSGCALILAVLLFFAKTDAP  192 (417)
T ss_dssp             CH-HHHHHHHHHHHHHHHHHHHSSCCCSC
T ss_pred             cc-cccccchhhHHHHHHHHHHHHhcccc
Confidence            43 44444444555555555666666664

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=3.2e-13  Score=122.23  Aligned_cols=149  Identities=13%  Similarity=0.075  Sum_probs=113.4

Q ss_pred             HHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHH---H--hhhHHHHHHHHHH
Q 018408          112 SIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISA---Q--AHSLDEMLWGRFL  186 (356)
Q Consensus       112 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~---~--~~~~~~~~~~~~l  186 (356)
                      ++.+.++.  +..+.++..+...++..++.++.|++.||++|+...........+..+...   .  ..+.+..+++.++
T Consensus       275 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (447)
T d1pw4a_         275 YLKEVKHF--ALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIV  352 (447)
T ss_dssp             HBTTBSCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHH
T ss_pred             hccccccc--ccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            44555677  666788999999999999999999999999987654443333333222222   1  3466777777888


Q ss_pred             HHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHH-HHHHHHHhhhccCCCCchhHHHHHHhHHHHHHHHHHhhc
Q 018408          187 VGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCL-GIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQF  263 (356)
Q Consensus       187 ~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~-g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~  263 (356)
                      .|++.++..+....+..|.+|++.||+++|+.+....+ |.+++|.+.+.+.+..| |+..|++.++..++..++..+
T Consensus       353 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~  429 (447)
T d1pw4a_         353 IGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVILLIV  429 (447)
T ss_dssp             HHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-SHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHH
Confidence            89998888889999999999999999999998877666 56778999999999888 998888877666666554433