Citrus Sinensis ID: 018414

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350------
Protein Sequence
MAAMASTAFAPSVSSTTNKLFDSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETADG
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccEEEEcccHHHHHHHHHHHHcccccEEEEccccccccccccccccccccccccHHHHHHHHHccccccccccEEEEcHHHHHHHHHHHHHHccccEEEcccccEEEEEEccEEEEEEEccEEEEccccccccccccEEEEcEEEEcccccccccccEEcccccccccccccccccccHHHHHHHHHccccEEEccEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccEEcccccccEEEcccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHcccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccEEEEccEHHHHHHHHHHHHccccEEEEEEEcccccccccHccHHccHEEEcccHHHHHHHHccccccccccEEEccHHHHHHHHHHHHHHccccEEEEEEEEEEEEEEcccEEEEEEEEEEEEEcccccccccccEEEEEEEEEcccccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHcccccccEEEEcHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccccccccEccccccEEEEEEccccHHccc
Coil and Loop (DISEMBL)
maamastafapsvssttnklfdssfhgapmspsllrlqpikssrpnnlsisasasppydlntfkfdpikesivSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAyelsknpniqIAIIeqsvspgggawlgGQLFSAMVVRKPAHIFLdelgidydeqdnYVVIKHAALFTSTIMSKllarpnvklfnAVAAEDLIVKGGRVGGVVTNWALVSmnhdtqscmdpnvMEAKVVVsscghdgpfgatgVKRLksigmieevpgmkaldmnSAEDAIVRLTREVVPGMIVTGMEvaeidgaprmgptfgammISGQKAAHLALKSlgqpnaldgtyvggvHPELILAAAdsaetadg
Flexible Loop (DISEMBL)
maamastafapsvsstTNKLFDSSFHGAPMSPSLLRLQPIKSSRPNNLSisasasppydlntfkfdpikesivsreMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETADG
Low Complexity Region (SEG)
MAAMASTAFAPSVSSTTNKLFDSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDvvvvGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETADG
Disordered region (IsUnstruct)
***********************************************************LNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILA**********
Disordered Region (DISOPRED)
****************************************************SASPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGAT****************MKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAAD*******
Disordered Region (DISEMBL)
****************TNKLFDSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAA********
Disordered Region (DISPRO)
********************************************************PYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSA*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAMASTAFAPSVSSTTNKLFDSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETADG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	356	2.2.26 [Sep-21-2011]
O23787	356	Thiamine thiazole synthas	no	no	0.997	0.997	1.0	0.0
F6H9A9	353	Thiamine thiazole synthas	yes	no	0.907	0.915	0.854	1e-166
Q38814	349	Thiamine thiazole synthas	yes	no	0.974	0.994	0.806	1e-166
Q38709	352	Thiamine thiazole synthas	N/A	no	0.932	0.943	0.870	1e-165
F6H7K5	355	Thiamine thiazole synthas	no	no	0.983	0.985	0.810	1e-165
A9SME1	356	Thiamine thiazole synthas	N/A	no	0.969	0.969	0.769	1e-152
A9SMC8	343	Thiamine thiazole synthas	N/A	no	0.882	0.915	0.815	1e-152
A9RHX1	357	Thiamine thiazole synthas	N/A	no	0.831	0.829	0.851	1e-151
A9RHW6	357	Thiamine thiazole synthas	N/A	no	0.820	0.817	0.849	1e-150
C5X2M4	352	Thiamine thiazole synthas	N/A	no	0.938	0.948	0.765	1e-146

>sp|O23787|THI4_CITSI Thiamine thiazole synthase, chloroplastic OS=Citrus sinensis GN=THI1 PE=2 SV=1

 Score =  728 bits (1878), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/355 (100%), Positives = 355/355 (100%)

Query: 1   MAAMASTAFAPSVSSTTNKLFDSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDL 60
           MAAMASTAFAPSVSSTTNKLFDSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDL
Sbjct: 1   MAAMASTAFAPSVSSTTNKLFDSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDL 60

Query: 61  NTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAII 120
           NTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAII
Sbjct: 61  NTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAII 120

Query: 121 EQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKL 180
           EQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKL
Sbjct: 121 EQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKL 180

Query: 181 LARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGH 240
           LARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGH
Sbjct: 181 LARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGH 240

Query: 241 DGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGA 300
           DGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGA
Sbjct: 241 DGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGA 300

Query: 301 PRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD 355
           PRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD
Sbjct: 301 PRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD 355

Involved in biosynthesis of the thiamine precursor thiazole. Catalyzes the conversion of NAD and glycine to adenosine diphosphate 5-(2-hydroxyethyl)-4-methylthiazole-2-carboxylic acid (ADT), an adenylated thiazole intermediate. The reaction includes an iron-dependent sulfide transfer from a conserved cysteine residue of the protein to a thiazole intermediate. The enzyme can only undergo a single turnover, which suggests it is a suicide enzyme. May have additional roles in adaptation to various stress conditions and in DNA damage tolerance.
Citrus sinensis (taxid: 2711)

>sp|F6H9A9|THI41_VITVI Thiamine thiazole synthase 1, chloroplastic OS=Vitis vinifera GN=THI1-1 PE=3 SV=1

 Score =  583 bits (1503), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 281/329 (85%), Positives = 309/329 (93%), Gaps = 6/329 (1%)

Query: 20  LFD---SSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSRE 76
           +FD   SSFHG P++ +  RL P+KS+ P NL+++A+A P YDL +FKF+PIKESIVSRE
Sbjct: 16  VFDPHKSSFHGVPIA-TQARLSPVKST-PVNLAVTAAAMP-YDLRSFKFEPIKESIVSRE 72

Query: 77  MTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQL 136
           MTRRYM DMITYADTDVVVVGAGSAGLSCAYELSKNP++Q+AIIEQSVSPGGGAWLGGQL
Sbjct: 73  MTRRYMMDMITYADTDVVVVGAGSAGLSCAYELSKNPSVQVAIIEQSVSPGGGAWLGGQL 132

Query: 137 FSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAED 196
           FS+MVVRKPAH FLDELG++YDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAED
Sbjct: 133 FSSMVVRKPAHRFLDELGLEYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAED 192

Query: 197 LIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIG 256
           LI+K G+VGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRL+S+G
Sbjct: 193 LIIKEGKVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLRSVG 252

Query: 257 MIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQK 316
           MI+ VPGMKALDMN+AED IVRLTREVVPGMIVTGMEVAEIDG+PRMGPTFGAMMISGQK
Sbjct: 253 MIDSVPGMKALDMNTAEDEIVRLTREVVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQK 312

Query: 317 AAHLALKSLGQPNALDGTYVGGVHPELIL 345
           AAHLALKSLG PNALDGTY+G +HPEL+L
Sbjct: 313 AAHLALKSLGLPNALDGTYIGNLHPELVL 341

Involved in biosynthesis of the thiamine precursor thiazole. Catalyzes the conversion of NAD and glycine to adenosine diphosphate 5-(2-hydroxyethyl)-4-methylthiazole-2-carboxylic acid (ADT), an adenylated thiazole intermediate. The reaction includes an iron-dependent sulfide transfer from a conserved cysteine residue of the protein to a thiazole intermediate. The enzyme can only undergo a single turnover, which suggests it is a suicide enzyme. May have additional roles in adaptation to various stress conditions and in DNA damage tolerance.

Vitis vinifera (taxid: 29760)

>sp|Q38814|THI4_ARATH Thiamine thiazole synthase, chloroplastic OS=Arabidopsis thaliana GN=THI1 PE=1 SV=1

 Score =  583 bits (1502), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 287/356 (80%), Positives = 317/356 (89%), Gaps = 9/356 (2%)

Query: 1   MAAMASTAFAPSVSSTT-NKLFDSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYD 59
           MAA+AST    S+SST   +LFDSSFHG+ +S + + +      +P + S+ A+ +  YD
Sbjct: 1   MAAIASTL---SLSSTKPQRLFDSSFHGSAISAAPISI----GLKPRSFSVRATTAG-YD 52

Query: 60  LNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAI 119
           LN F FDPIKESIVSREMTRRYMTDMITYA+TDVVVVGAGSAGLS AYE+SKNPN+Q+AI
Sbjct: 53  LNAFTFDPIKESIVSREMTRRYMTDMITYAETDVVVVGAGSAGLSAAYEISKNPNVQVAI 112

Query: 120 IEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSK 179
           IEQSVSPGGGAWLGGQLFSAM+VRKPAH+FLDE+G+ YDEQD YVV+KHAALFTSTIMSK
Sbjct: 113 IEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAALFTSTIMSK 172

Query: 180 LLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG 239
           LLARPNVKLFNAVAAEDLIVKG RVGGVVTNWALV+ NH TQSCMDPNVMEAK+VVSSCG
Sbjct: 173 LLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCG 232

Query: 240 HDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDG 299
           HDGPFGATGVKRLKSIGMI+ VPGMKALDMN+AEDAIVRLTREVVPGMIVTGMEVAEIDG
Sbjct: 233 HDGPFGATGVKRLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDG 292

Query: 300 APRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD 355
           APRMGPTFGAMMISGQKA  LALK+LG PNA+DGT VG + PEL+LAAADSAET D
Sbjct: 293 APRMGPTFGAMMISGQKAGQLALKALGLPNAIDGTLVGNLSPELVLAAADSAETVD 348

Involved in biosynthesis of the thiamine precursor thiazole. Catalyzes the conversion of NAD and glycine to adenosine diphosphate 5-(2-hydroxyethyl)-4-methylthiazole-2-carboxylic acid (ADT), an adenylated thiazole intermediate. The reaction includes an iron-dependent sulfide transfer from a conserved cysteine residue of the protein to a thiazole intermediate. The enzyme can only undergo a single turnover, which suggests it is a suicide enzyme. May have additional roles in adaptation to various stress conditions and in DNA damage tolerance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38709|THI4_ALNGL Thiamine thiazole synthase, chloroplastic OS=Alnus glutinosa GN=THI1 PE=2 SV=1

 Score =  582 bits (1500), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 290/333 (87%), Positives = 312/333 (93%), Gaps = 1/333 (0%)

Query: 23  SSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTRRYM 82
           SSF+G P++PS +R+QP K+    ++S+S + SPPYDL  F FDPIKESIVSREMTRRYM
Sbjct: 20  SSFYGTPLAPSSIRVQPTKAGAKPSISMSGAPSPPYDLKAFTFDPIKESIVSREMTRRYM 79

Query: 83  TDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVV 142
            DMITYADTDVVVVGAGS+GL C YELSKNP++Q+AIIEQSVSPGGGAWLGGQLFS MVV
Sbjct: 80  MDMITYADTDVVVVGAGSSGLVC-YELSKNPSVQVAIIEQSVSPGGGAWLGGQLFSGMVV 138

Query: 143 RKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG 202
           RKPAH+FLDELGI+YDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG
Sbjct: 139 RKPAHLFLDELGIEYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG 198

Query: 203 RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVP 262
           RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK L+SIGMI+ VP
Sbjct: 199 RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKSLRSIGMIDTVP 258

Query: 263 GMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLAL 322
           GMKALDMN AEDAIVRLTRE+VPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLAL
Sbjct: 259 GMKALDMNVAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLAL 318

Query: 323 KSLGQPNALDGTYVGGVHPELILAAADSAETAD 355
           K+LG PNALDG+YVGG+HPELILAAADSAE AD
Sbjct: 319 KALGLPNALDGSYVGGIHPELILAAADSAEIAD 351

Involved in biosynthesis of the thiamine precursor thiazole. Catalyzes the conversion of NAD and glycine to adenosine diphosphate 5-(2-hydroxyethyl)-4-methylthiazole-2-carboxylic acid (ADT), an adenylated thiazole intermediate. The reaction includes an iron-dependent sulfide transfer from a conserved cysteine residue of the protein to a thiazole intermediate. The enzyme can only undergo a single turnover, which suggests it is a suicide enzyme. May have additional roles in adaptation to various stress conditions and in DNA damage tolerance.

Alnus glutinosa (taxid: 3517)

>sp|F6H7K5|THI42_VITVI Thiamine thiazole synthase 2, chloroplastic OS=Vitis vinifera GN=THI1-2 PE=3 SV=1

 Score =  580 bits (1496), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 291/359 (81%), Positives = 318/359 (88%), Gaps = 9/359 (2%)

Query: 1   MAAMASTAFAPSVSSTTNKLFD--SSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPY 58
           MA+MA+T  + S S+     FD  SSFHG+P+S    R+ PIK S   + +IS S+  PY
Sbjct: 1   MASMATTLTSLS-SNPKPAFFDNKSSFHGSPIS---YRVLPIKVSH-QSPTISMSSVSPY 55

Query: 59  DLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIA 118
           DL +FKF+PIKESIV+REMTRRYM DMITYADTDVV+VGAGSAGLSCAYELSKNP+I++A
Sbjct: 56  DLQSFKFEPIKESIVAREMTRRYMMDMITYADTDVVIVGAGSAGLSCAYELSKNPSIRVA 115

Query: 119 IIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMS 178
           IIEQSVSPGGGAWLGGQLFSAMVVRKPAH FLDELGI+YDEQDNYVVIKHAALFTSTIMS
Sbjct: 116 IIEQSVSPGGGAWLGGQLFSAMVVRKPAHHFLDELGIEYDEQDNYVVIKHAALFTSTIMS 175

Query: 179 KLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSC 238
           KLLARPNVKLFNAVAAEDLIVK  RV GVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSC
Sbjct: 176 KLLARPNVKLFNAVAAEDLIVKEERVAGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSC 235

Query: 239 GHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEID 298
           GHDGPFGATGVKRLKSIGMI+ VPGMKALDMN+AEDAIVRLTRE+VPGMIVTGMEVAEID
Sbjct: 236 GHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEID 295

Query: 299 GAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGG--VHPELILAAADSAETAD 355
           GAPRMGPTFGAMMISGQKAAHLAL++LGQPNA+DG Y     + PELILAAA++ E  D
Sbjct: 296 GAPRMGPTFGAMMISGQKAAHLALRALGQPNAIDGNYTEAETMQPELILAAAETGEIVD 354

Involved in biosynthesis of the thiamine precursor thiazole. Catalyzes the conversion of NAD and glycine to adenosine diphosphate 5-(2-hydroxyethyl)-4-methylthiazole-2-carboxylic acid (ADT), an adenylated thiazole intermediate. The reaction includes an iron-dependent sulfide transfer from a conserved cysteine residue of the protein to a thiazole intermediate. The enzyme can only undergo a single turnover, which suggests it is a suicide enzyme. May have additional roles in adaptation to various stress conditions and in DNA damage tolerance.

Vitis vinifera (taxid: 29760)

>sp|A9SME1|THI42_PHYPA Thiamine thiazole synthase 2, chloroplastic OS=Physcomitrella patens subsp. patens GN=THI1-2 PE=3 SV=1

 Score =  539 bits (1389), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 271/352 (76%), Positives = 299/352 (84%), Gaps = 7/352 (1%)

Query: 5   ASTAFAPSVSSTTNKLFDSSFHGAPM--SPSLLRLQPIKSSRPNNLSISASASPPYDLNT 62
           A  AFAP +SS+      SS  G  M  SP       ++ +R    S S  +   YDLN 
Sbjct: 8   AGVAFAPKISSSNVGSSSSSLAGVRMVASPK----AQLRHARLPAASASMYSDAKYDLNN 63

Query: 63  FKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQ 122
           +KF+PIKESIV+REMTRRYMTDMIT+ADTDVVVVGAGSAGLSCAYELSKNPN+++AIIEQ
Sbjct: 64  YKFEPIKESIVAREMTRRYMTDMITHADTDVVVVGAGSAGLSCAYELSKNPNVKVAIIEQ 123

Query: 123 SVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLA 182
           SVSPGGGAWLGGQLFSAMVVRKPAH FLDE+ + Y+E +NYVVIKHAALFTSTIMSKLLA
Sbjct: 124 SVSPGGGAWLGGQLFSAMVVRKPAHRFLDEIEVPYEELENYVVIKHAALFTSTIMSKLLA 183

Query: 183 RPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242
           RPNVKLFNAVAAEDLI++G RV GVVTNWALV+ NH+TQSCMDPNVMEAKVVVSSCGHDG
Sbjct: 184 RPNVKLFNAVAAEDLIIRGDRVSGVVTNWALVAQNHNTQSCMDPNVMEAKVVVSSCGHDG 243

Query: 243 PFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPR 302
           PFGATGVKRL+SIGMIE VPGMK LDMN+AEDAIV+ TREVVPGMIVTGMEVAEIDG+PR
Sbjct: 244 PFGATGVKRLRSIGMIESVPGMKCLDMNAAEDAIVKHTREVVPGMIVTGMEVAEIDGSPR 303

Query: 303 MGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETA 354
           MGPTFGAMMISGQKAAHLALK+LG PN LDG Y   VHPEL+LA+ D  ETA
Sbjct: 304 MGPTFGAMMISGQKAAHLALKALGLPNELDGNYKPNVHPELVLASTDD-ETA 354

Involved in biosynthesis of the thiamine precursor thiazole. Catalyzes the conversion of NAD and glycine to adenosine diphosphate 5-(2-hydroxyethyl)-4-methylthiazole-2-carboxylic acid (ADT), an adenylated thiazole intermediate. The reaction includes an iron-dependent sulfide transfer from a conserved cysteine residue of the protein to a thiazole intermediate. The enzyme can only undergo a single turnover, which suggests it is a suicide enzyme. May have additional roles in adaptation to various stress conditions and in DNA damage tolerance.

Physcomitrella patens subsp. patens (taxid: 145481)

>sp|A9SMC8|THI44_PHYPA Thiamine thiazole synthase 4, chloroplastic OS=Physcomitrella patens subsp. patens GN=THI1-4 PE=3 SV=1

 Score =  536 bits (1381), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 257/315 (81%), Positives = 284/315 (90%), Gaps = 1/315 (0%)

Query: 40  IKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAG 99
           ++ +R    S S  +   YDLN +KF+PIKESIV+REMTRRYMT+MIT+ADTDVVVVGAG
Sbjct: 28  LRHARLPAASASMYSDAKYDLNNYKFEPIKESIVAREMTRRYMTEMITHADTDVVVVGAG 87

Query: 100 SAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDE 159
           SAGLSCAYELSKNPN+++AIIEQSVSPGGGAWLGGQLFSAMVVRKPAH FLDE+ + Y+E
Sbjct: 88  SAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHRFLDEIEVPYEE 147

Query: 160 QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHD 219
            +NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLI++G RV GVVTNWALV+ NH+
Sbjct: 148 LENYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIIRGDRVSGVVTNWALVAQNHN 207

Query: 220 TQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRL 279
           TQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRL+SIGMIE VPGMK LDMN+AEDAIV+ 
Sbjct: 208 TQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLRSIGMIESVPGMKCLDMNAAEDAIVKH 267

Query: 280 TREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGV 339
           TREVVPGMIVTGMEVAEIDG+PRMGPTFGAMMISGQKAAHLALK+LG PN LDG Y   V
Sbjct: 268 TREVVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKALGLPNELDGNYKLNV 327

Query: 340 HPELILAAADSAETA 354
           HPEL+LA+ D  ETA
Sbjct: 328 HPELVLASTDD-ETA 341

Involved in biosynthesis of the thiamine precursor thiazole. Catalyzes the conversion of NAD and glycine to adenosine diphosphate 5-(2-hydroxyethyl)-4-methylthiazole-2-carboxylic acid (ADT), an adenylated thiazole intermediate. The reaction includes an iron-dependent sulfide transfer from a conserved cysteine residue of the protein to a thiazole intermediate. The enzyme can only undergo a single turnover, which suggests it is a suicide enzyme. May have additional roles in adaptation to various stress conditions and in DNA damage tolerance.

Physcomitrella patens subsp. patens (taxid: 145481)

>sp|A9RHX1|THI41_PHYPA Thiamine thiazole synthase 1, chloroplastic OS=Physcomitrella patens subsp. patens GN=THI1-1 PE=3 SV=1

 Score =  535 bits (1377), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 253/297 (85%), Positives = 276/297 (92%), Gaps = 1/297 (0%)

Query: 58  YDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQI 117
           YDLN +KF PIKESIV+REMTRRYMTDMIT+ADTDVVVVGAGSAGLSCAYELSKNPN+++
Sbjct: 60  YDLNNYKFAPIKESIVAREMTRRYMTDMITHADTDVVVVGAGSAGLSCAYELSKNPNVKV 119

Query: 118 AIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIM 177
           AI+EQSVSPGGGAWLGGQLFSAM+VRKPAH FLDE+ + Y+E +NYVVIKHAALFTSTIM
Sbjct: 120 AIVEQSVSPGGGAWLGGQLFSAMIVRKPAHRFLDEIEVPYEEMENYVVIKHAALFTSTIM 179

Query: 178 SKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSS 237
           SKLLARPNVKLFNAVAAEDLI++G RV GVVTNWALV+ NH+TQSCMDPNVMEAKVVVSS
Sbjct: 180 SKLLARPNVKLFNAVAAEDLIIRGDRVSGVVTNWALVAQNHNTQSCMDPNVMEAKVVVSS 239

Query: 238 CGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEI 297
           CGHDGPFGATGVKRL+SIGMIE VPGMK LDMN+AEDAIV+ TREVVPGMIVTGMEVAEI
Sbjct: 240 CGHDGPFGATGVKRLRSIGMIESVPGMKCLDMNAAEDAIVKHTREVVPGMIVTGMEVAEI 299

Query: 298 DGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETA 354
           DG+PRMGPTFGAMMISGQKAAHLALK+LG PN LDG Y   VHPEL+LA+ D  ETA
Sbjct: 300 DGSPRMGPTFGAMMISGQKAAHLALKALGLPNELDGNYKPNVHPELVLASTDD-ETA 355

Involved in biosynthesis of the thiamine precursor thiazole. Catalyzes the conversion of NAD and glycine to adenosine diphosphate 5-(2-hydroxyethyl)-4-methylthiazole-2-carboxylic acid (ADT), an adenylated thiazole intermediate. The reaction includes an iron-dependent sulfide transfer from a conserved cysteine residue of the protein to a thiazole intermediate. The enzyme can only undergo a single turnover, which suggests it is a suicide enzyme. May have additional roles in adaptation to various stress conditions and in DNA damage tolerance.

Physcomitrella patens subsp. patens (taxid: 145481)

>sp|A9RHW6|THI43_PHYPA Thiamine thiazole synthase 3, chloroplastic OS=Physcomitrella patens subsp. patens GN=THI1-3 PE=3 SV=1

 Score =  531 bits (1369), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 248/292 (84%), Positives = 273/292 (93%)

Query: 58  YDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQI 117
           YDLN +KF PIKESIV+REMTRRYMTDMIT+ADTDVVVVGAGSAGLSCAYELSKNPN+++
Sbjct: 60  YDLNNYKFAPIKESIVAREMTRRYMTDMITHADTDVVVVGAGSAGLSCAYELSKNPNVKV 119

Query: 118 AIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIM 177
           AI+EQSVSPGGGAWLGGQLFSAM+VRKPAH FLDE+ + Y+E +NYVVIKHAALFTSTIM
Sbjct: 120 AIVEQSVSPGGGAWLGGQLFSAMIVRKPAHRFLDEIEVPYEEMENYVVIKHAALFTSTIM 179

Query: 178 SKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSS 237
           SKLLARPNVKLFNAVAAEDLI++G RV GVVTNWALV+ NH+TQSCMDPNVMEAKVVVSS
Sbjct: 180 SKLLARPNVKLFNAVAAEDLIIRGDRVSGVVTNWALVAQNHNTQSCMDPNVMEAKVVVSS 239

Query: 238 CGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEI 297
           CGHDGPFGATGVKRL+SIGMIE VPGMK LDMN+AEDAIV+ TREVVPGMIVTGMEVAEI
Sbjct: 240 CGHDGPFGATGVKRLRSIGMIESVPGMKCLDMNAAEDAIVKHTREVVPGMIVTGMEVAEI 299

Query: 298 DGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAAD 349
           DG+PRMGPTFGAMMISGQKAAHLAL++LG PN +DG Y   VHPEL+LA+ D
Sbjct: 300 DGSPRMGPTFGAMMISGQKAAHLALRALGLPNEVDGNYKPNVHPELVLASTD 351

Involved in biosynthesis of the thiamine precursor thiazole. Catalyzes the conversion of NAD and glycine to adenosine diphosphate 5-(2-hydroxyethyl)-4-methylthiazole-2-carboxylic acid (ADT), an adenylated thiazole intermediate. The reaction includes an iron-dependent sulfide transfer from a conserved cysteine residue of the protein to a thiazole intermediate. The enzyme can only undergo a single turnover, which suggests it is a suicide enzyme. May have additional roles in adaptation to various stress conditions and in DNA damage tolerance.

Physcomitrella patens subsp. patens (taxid: 145481)

>sp|C5X2M4|THI42_SORBI Thiamine thiazole synthase 2, chloroplastic OS=Sorghum bicolor GN=THI1-2 PE=3 SV=1

 Score =  517 bits (1332), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 267/349 (76%), Positives = 303/349 (86%), Gaps = 15/349 (4%)

Query: 13  VSSTTNKLFDSSFHGA--------PMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTFK 64
           +++T + L  SSF GA        P SP+++     + +     S  +S++PPYDL +F+
Sbjct: 1   MATTASSLLKSSFAGARLPASTRTPSSPAVVATP--RGAGAIRASSISSSNPPYDLTSFR 58

Query: 65  FDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124
           F PIKES+VSREMTRRYMTDMITYADTDVV+VGAGSAGLSCAYELSK+P++ IAI+EQSV
Sbjct: 59  FSPIKESVVSREMTRRYMTDMITYADTDVVIVGAGSAGLSCAYELSKDPSVSIAIVEQSV 118

Query: 125 SPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARP 184
           SPGGGAWLGGQLFSAMVVRKPAH+FLDELG+ YDE ++YVVIKHAALFTST+MS+LLARP
Sbjct: 119 SPGGGAWLGGQLFSAMVVRKPAHLFLDELGVAYDEAEDYVVIKHAALFTSTVMSRLLARP 178

Query: 185 NVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF 244
           NVKLFNAVA EDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF
Sbjct: 179 NVKLFNAVAVEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF 238

Query: 245 GATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMG 304
           GATGVKRL+ IGMI +VPGMKALDMN+AED IVRLTREVVPGMIVTGMEVAEIDGAPRMG
Sbjct: 239 GATGVKRLQDIGMISDVPGMKALDMNTAEDEIVRLTREVVPGMIVTGMEVAEIDGAPRMG 298

Query: 305 PTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHP----ELILAAAD 349
           PTFGAMMISGQKAAHLALK+LG+PNA+DGT +  V P    E ++A+ D
Sbjct: 299 PTFGAMMISGQKAAHLALKALGRPNAVDGT-IKVVSPALRQEFVIASKD 346

Involved in biosynthesis of the thiamine precursor thiazole. Catalyzes the conversion of NAD and glycine to adenosine diphosphate 5-(2-hydroxyethyl)-4-methylthiazole-2-carboxylic acid (ADT), an adenylated thiazole intermediate. The reaction includes an iron-dependent sulfide transfer from a conserved cysteine residue of the protein to a thiazole intermediate. The enzyme can only undergo a single turnover, which suggests it is a suicide enzyme. May have additional roles in adaptation to various stress conditions and in DNA damage tolerance.

Sorghum bicolor (taxid: 4558)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	356
6094476	356	RecName: Full=Thiamine thiazole synthase	0.997	0.997	1.0	0.0
295687239	357	thiazole biosynthetic enzyme [Gossypium	0.988	0.985	0.845	1e-173
118486174	357	unknown [Populus trichocarpa]	0.994	0.991	0.845	1e-171
255563713	359	electron transfer flavoprotein-ubiquinon	0.938	0.930	0.852	1e-166
297792939	352	hypothetical protein ARALYDRAFT_918614 [	0.977	0.988	0.812	1e-166
30013665	358	putative chloroplast thiazole biosynthet	0.963	0.958	0.830	1e-165
224115244	324	predicted protein [Populus trichocarpa]	0.898	0.987	0.890	1e-164
225461077	353	PREDICTED: thiazole biosynthetic enzyme,	0.907	0.915	0.854	1e-164
15239735	349	thiazole biosynthetic enzyme [Arabidopsi	0.974	0.994	0.806	1e-164
2501187	352	RecName: Full=Thiamine thiazole synthase	0.932	0.943	0.870	1e-163

>gi|6094476|sp|O23787.1|THI4_CITSI RecName: Full=Thiamine thiazole synthase, chloroplastic; AltName: Full=Thiazole biosynthetic enzyme; Flags: Precursor gi|2582665|emb|CAB05370.1| thi [Citrus sinensis]

 Score =  728 bits (1878), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/355 (100%), Positives = 355/355 (100%)

Query: 1   MAAMASTAFAPSVSSTTNKLFDSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDL 60
           MAAMASTAFAPSVSSTTNKLFDSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDL
Sbjct: 1   MAAMASTAFAPSVSSTTNKLFDSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDL 60

Query: 61  NTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAII 120
           NTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAII
Sbjct: 61  NTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAII 120

Query: 121 EQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKL 180
           EQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKL
Sbjct: 121 EQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKL 180

Query: 181 LARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGH 240
           LARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGH
Sbjct: 181 LARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGH 240

Query: 241 DGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGA 300
           DGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGA
Sbjct: 241 DGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGA 300

Query: 301 PRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD 355
           PRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD
Sbjct: 301 PRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD 355

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|295687239|gb|ADG27845.1| thiazole biosynthetic enzyme [Gossypium hirsutum]

 Score =  614 bits (1584), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 301/356 (84%), Positives = 321/356 (90%), Gaps = 4/356 (1%)

Query: 2   AAMASTAFAPSVSSTTNKLFDSSFHGAPMSPSLLRLQPIKSSRPNNLSISASAS--PPYD 59
           +++A+T  + S       LF+SSFHG P+ P  L       S P N SIS SA+  PPYD
Sbjct: 3   SSIATTLTSSSKLCRNTSLFESSFHGVPIKP--LSFHFKTKSSPCNASISMSAASPPPYD 60

Query: 60  LNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAI 119
           LN F+FDPIKESIVSREMTRRYM DMITYADTDVVVVGAGSAGLSCAYELSKNP++QIAI
Sbjct: 61  LNNFRFDPIKESIVSREMTRRYMMDMITYADTDVVVVGAGSAGLSCAYELSKNPSVQIAI 120

Query: 120 IEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSK 179
           +EQSVSPGGGAWLGGQLFSAMVVRKPAH FLDEL I+YDEQD+YVVIKHAALFTSTIMSK
Sbjct: 121 VEQSVSPGGGAWLGGQLFSAMVVRKPAHRFLDELAIEYDEQDDYVVIKHAALFTSTIMSK 180

Query: 180 LLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG 239
           LLARPNVKLFNAVAAEDLIVK GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG
Sbjct: 181 LLARPNVKLFNAVAAEDLIVKEGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG 240

Query: 240 HDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDG 299
           HDGPFGATGVKRLKSIGMI+ VPGMKALDMN+AEDAIVRLTRE+VPGMIVTGMEVAEIDG
Sbjct: 241 HDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDG 300

Query: 300 APRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD 355
           +PRMGPTFGAMMISGQKAAHLALKSLG PNA+DGTYVG +HPELILAAADSAETAD
Sbjct: 301 SPRMGPTFGAMMISGQKAAHLALKSLGLPNAIDGTYVGSIHPELILAAADSAETAD 356

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486174|gb|ABK94930.1| unknown [Populus trichocarpa]

 Score =  607 bits (1564), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 302/357 (84%), Positives = 327/357 (91%), Gaps = 3/357 (0%)

Query: 1   MAAMASTAFAPSVSSTTNKLFD--SSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPY 58
           MA MA+T  + S  S     FD  SSFHG P+S   LR+QP KSS   N+SIS S SPPY
Sbjct: 1   MATMATTLTSLSTKSQKLSPFDTSSSFHGTPISKPTLRMQPTKSSSSPNVSISMS-SPPY 59

Query: 59  DLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIA 118
           DLN FKF+PIKESIVSREMTRRYM DMIT+ADTDVV+VGAGSAGLSCAYELSKNP+++IA
Sbjct: 60  DLNAFKFEPIKESIVSREMTRRYMMDMITHADTDVVIVGAGSAGLSCAYELSKNPSVKIA 119

Query: 119 IIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMS 178
           I+EQSVSPGGGAWLGGQLFSAMVVRKPAH+FL+ELGI+YDEQ++YVVIKHAALFTSTIMS
Sbjct: 120 IVEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLNELGIEYDEQEDYVVIKHAALFTSTIMS 179

Query: 179 KLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSC 238
           KLLARPNVKLFNAVAAEDLIVK GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSC
Sbjct: 180 KLLARPNVKLFNAVAAEDLIVKEGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSC 239

Query: 239 GHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEID 298
           GHDGPFGATGVKRLKSIGMI+ VPGMKALDMN+AEDAIV+LTREVVPGMIVTGMEVAEID
Sbjct: 240 GHDGPFGATGVKRLKSIGMIDSVPGMKALDMNAAEDAIVKLTREVVPGMIVTGMEVAEID 299

Query: 299 GAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD 355
           G+PRMGPTFGAMMISGQKAAHLALKSLG PNALDGT+VGG+HPELILAA +SAE A+
Sbjct: 300 GSPRMGPTFGAMMISGQKAAHLALKSLGMPNALDGTFVGGIHPELILAAVESAEIAE 356

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563713|ref|XP_002522858.1| electron transfer flavoprotein-ubiquinone oxidoreductase, putative [Ricinus communis] gi|223537942|gb|EEF39556.1| electron transfer flavoprotein-ubiquinone oxidoreductase, putative [Ricinus communis]

 Score =  590 bits (1520), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 288/338 (85%), Positives = 317/338 (93%), Gaps = 4/338 (1%)

Query: 20  LFDSS--FHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREM 77
           LF+SS  F+G P++   LR+QP   +   ++S+SAS++P Y+LN+FKFDPIKESIVSREM
Sbjct: 23  LFESSSAFYGTPVAAPSLRMQPTSKTNAVSVSMSASSTPSYNLNSFKFDPIKESIVSREM 82

Query: 78  TRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLF 137
           TRRYMTDMI+YADTDVV+VGAGSAGLSCAYELSKNP++Q+AIIEQSVSPGGGAWLGGQLF
Sbjct: 83  TRRYMTDMISYADTDVVIVGAGSAGLSCAYELSKNPDVQVAIIEQSVSPGGGAWLGGQLF 142

Query: 138 SAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDL 197
           SAMVVRKPAH FLDE+GI+YDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDL
Sbjct: 143 SAMVVRKPAHRFLDEVGIEYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDL 202

Query: 198 IVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGM 257
           IVK GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGM
Sbjct: 203 IVKEGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGM 262

Query: 258 IEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKA 317
           I+ VPGMKALDMN+AEDAIVRLTRE+VPGMIVTGMEVAEIDG+PRMGPTFGAMMISGQKA
Sbjct: 263 IDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKA 322

Query: 318 AHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD 355
           AHLALKSLG P+ALDGT+   +HPEL+LAAA+S ETAD
Sbjct: 323 AHLALKSLGLPSALDGTFT--LHPELVLAAAESGETAD 358

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297792939|ref|XP_002864354.1| hypothetical protein ARALYDRAFT_918614 [Arabidopsis lyrata subsp. lyrata] gi|297310189|gb|EFH40613.1| hypothetical protein ARALYDRAFT_918614 [Arabidopsis lyrata subsp. lyrata]

 Score =  589 bits (1518), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 291/358 (81%), Positives = 319/358 (89%), Gaps = 10/358 (2%)

Query: 1   MAAMASTAFAPSVSSTT-NKLFDSSFHGAPMS--PSLLRLQPIKSSRPNNLSISASASPP 57
           MAA+AST    S+SST   +LFDSSFHG+ +S  P  + L+P    R  ++    + +  
Sbjct: 1   MAAIASTL---SLSSTKPQRLFDSSFHGSSISAAPISIGLKP----RSGSVVSVRATTAG 53

Query: 58  YDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQI 117
           YDLN F FDPIKESIVSREMTRRYMTDMITYA+TDVVVVGAGSAGLSCAYE+SKNPN+Q+
Sbjct: 54  YDLNAFTFDPIKESIVSREMTRRYMTDMITYAETDVVVVGAGSAGLSCAYEISKNPNVQV 113

Query: 118 AIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIM 177
           AIIEQSVSPGGGAWLGGQLFSAM+VRKPAH+FLDE+G+ YDEQDNYVV+KHAALFTSTIM
Sbjct: 114 AIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDNYVVVKHAALFTSTIM 173

Query: 178 SKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSS 237
           SKLLARPNVKLFNAVAAEDLIVKG RVGGVVTNWALV+ NHDTQSCMDPNVMEAK+VVSS
Sbjct: 174 SKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHDTQSCMDPNVMEAKIVVSS 233

Query: 238 CGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEI 297
           CGHDGPFGATGVKRLKSIGMI+ VPGMKALDMN+AEDAIVRLTREVVPGMIVTGMEVAEI
Sbjct: 234 CGHDGPFGATGVKRLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEI 293

Query: 298 DGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD 355
           DGAPRMGPTFGAMMISGQKA  LALK+LG PNA+DGT VG + PEL+LAAADSAET D
Sbjct: 294 DGAPRMGPTFGAMMISGQKAGQLALKALGLPNAIDGTNVGNLSPELVLAAADSAETVD 351

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30013665|gb|AAP03875.1| putative chloroplast thiazole biosynthetic protein [Nicotiana tabacum]

 Score =  586 bits (1511), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 290/349 (83%), Positives = 314/349 (89%), Gaps = 6/349 (1%)

Query: 1   MAAMASTAFAPSVSSTTNKL--FDSSFHGAPMSPSLLRLQPIKSSRPN-NLSISASASPP 57
           MA MAST  A SV + TN L    SSF G P+  S  RL+P+KS++ N  +S+SA +SPP
Sbjct: 1   MATMAST-LASSVVTKTNFLDTHKSSFSGVPLF-SQARLKPVKSAQQNMTISMSADSSPP 58

Query: 58  -YDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQ 116
            YDLN F F+PIKESIVSREMTRRYMTDMITYADTDVV+VGAGSAGLSCAYE+SKNPN+Q
Sbjct: 59  PYDLNAFSFNPIKESIVSREMTRRYMTDMITYADTDVVIVGAGSAGLSCAYEISKNPNVQ 118

Query: 117 IAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTI 176
           +AI+EQSVSPGGGAWLGGQLFSAMVVRKPAH+FL+ELGIDYDEQDNYVVIKHAALFTSTI
Sbjct: 119 VAILEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLNELGIDYDEQDNYVVIKHAALFTSTI 178

Query: 177 MSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVS 236
           MSKLLARPNVKLFNAVA EDLIVK GRVGGVVTNW+LVS NHDTQSCMDPNVMEAK+VVS
Sbjct: 179 MSKLLARPNVKLFNAVATEDLIVKNGRVGGVVTNWSLVSQNHDTQSCMDPNVMEAKIVVS 238

Query: 237 SCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAE 296
           SCGHDGP GATGVKRLKSIGMI  VPGMKAL+MN+AEDAIVRLTREVVPGMIVTGMEVAE
Sbjct: 239 SCGHDGPMGATGVKRLKSIGMINHVPGMKALNMNAAEDAIVRLTREVVPGMIVTGMEVAE 298

Query: 297 IDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELIL 345
           IDGAPRMGPTFGAMMISGQKAAHLAL++LG PNALDGT    +HPELIL
Sbjct: 299 IDGAPRMGPTFGAMMISGQKAAHLALRALGLPNALDGTAESSIHPELIL 347

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115244|ref|XP_002316981.1| predicted protein [Populus trichocarpa] gi|222860046|gb|EEE97593.1| predicted protein [Populus trichocarpa]

 Score =  583 bits (1504), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 286/321 (89%), Positives = 308/321 (95%), Gaps = 1/321 (0%)

Query: 35  LRLQPIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVV 94
           LR+QP KSS   N+SIS S SPPYDLN FKF+PIKESIVSREMTRRYM DMIT+ADTDVV
Sbjct: 5   LRMQPTKSSSSPNVSISMS-SPPYDLNAFKFEPIKESIVSREMTRRYMMDMITHADTDVV 63

Query: 95  VVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELG 154
           +VGAGSAGLSCAYELSKNP+++IAI+EQSVSPGGGAWLGGQLFSAMVVRKPAH+FL+ELG
Sbjct: 64  IVGAGSAGLSCAYELSKNPSVKIAIVEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLNELG 123

Query: 155 IDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALV 214
           I+YDEQ++YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK GRVGGVVTNWALV
Sbjct: 124 IEYDEQEDYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKEGRVGGVVTNWALV 183

Query: 215 SMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAED 274
           SMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMI+ VPGMKALDMN+AED
Sbjct: 184 SMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNAAED 243

Query: 275 AIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGT 334
           AIV+LTREVVPGMIVTGMEVAEIDG+PRMGPTFGAMMISGQKAAHLALKSLG PNALDGT
Sbjct: 244 AIVKLTREVVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKSLGMPNALDGT 303

Query: 335 YVGGVHPELILAAADSAETAD 355
           +VGG+HPELILAA +SAE A+
Sbjct: 304 FVGGIHPELILAAVESAEIAE 324

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461077|ref|XP_002281769.1| PREDICTED: thiazole biosynthetic enzyme, chloroplastic isoform 1 [Vitis vinifera] gi|359494007|ref|XP_003634708.1| PREDICTED: thiazole biosynthetic enzyme, chloroplastic [Vitis vinifera] gi|378524288|sp|F6H9A9.1|THI41_VITVI RecName: Full=Thiamine thiazole synthase 1, chloroplastic; AltName: Full=Thiazole biosynthetic enzyme 1; Flags: Precursor

 Score =  583 bits (1503), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 281/329 (85%), Positives = 309/329 (93%), Gaps = 6/329 (1%)

Query: 20  LFD---SSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSRE 76
           +FD   SSFHG P++ +  RL P+KS+ P NL+++A+A P YDL +FKF+PIKESIVSRE
Sbjct: 16  VFDPHKSSFHGVPIA-TQARLSPVKST-PVNLAVTAAAMP-YDLRSFKFEPIKESIVSRE 72

Query: 77  MTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQL 136
           MTRRYM DMITYADTDVVVVGAGSAGLSCAYELSKNP++Q+AIIEQSVSPGGGAWLGGQL
Sbjct: 73  MTRRYMMDMITYADTDVVVVGAGSAGLSCAYELSKNPSVQVAIIEQSVSPGGGAWLGGQL 132

Query: 137 FSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAED 196
           FS+MVVRKPAH FLDELG++YDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAED
Sbjct: 133 FSSMVVRKPAHRFLDELGLEYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAED 192

Query: 197 LIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIG 256
           LI+K G+VGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRL+S+G
Sbjct: 193 LIIKEGKVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLRSVG 252

Query: 257 MIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQK 316
           MI+ VPGMKALDMN+AED IVRLTREVVPGMIVTGMEVAEIDG+PRMGPTFGAMMISGQK
Sbjct: 253 MIDSVPGMKALDMNTAEDEIVRLTREVVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQK 312

Query: 317 AAHLALKSLGQPNALDGTYVGGVHPELIL 345
           AAHLALKSLG PNALDGTY+G +HPEL+L
Sbjct: 313 AAHLALKSLGLPNALDGTYIGNLHPELVL 341

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15239735|ref|NP_200288.1| thiazole biosynthetic enzyme [Arabidopsis thaliana] gi|2501188|sp|Q38814.1|THI4_ARATH RecName: Full=Thiamine thiazole synthase, chloroplastic; AltName: Full=Thiazole biosynthetic enzyme; Flags: Precursor gi|16226384|gb|AAL16153.1|AF428385_1 AT5g54770/MBG8_3 [Arabidopsis thaliana] gi|16226866|gb|AAL16285.1|AF428355_1 AT5g54770/MBG8_3 [Arabidopsis thaliana] gi|16930501|gb|AAL31936.1|AF419604_1 AT5g54770/MBG8_3 [Arabidopsis thaliana] gi|1113783|gb|AAC97124.1| Thi1 protein [Arabidopsis thaliana] gi|9758257|dbj|BAB08756.1| thiazole biosynthetic enzyme precursor (ARA6) [Arabidopsis thaliana] gi|15809897|gb|AAL06876.1| AT5g54770/MBG8_3 [Arabidopsis thaliana] gi|16604392|gb|AAL24202.1| AT5g54770/MBG8_3 [Arabidopsis thaliana] gi|23296288|gb|AAN12914.1| At5g54770/MBG8_3 [Arabidopsis thaliana] gi|332009156|gb|AED96539.1| thiazole biosynthetic enzyme [Arabidopsis thaliana]

 Score =  583 bits (1502), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 287/356 (80%), Positives = 317/356 (89%), Gaps = 9/356 (2%)

Query: 1   MAAMASTAFAPSVSSTT-NKLFDSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYD 59
           MAA+AST    S+SST   +LFDSSFHG+ +S + + +      +P + S+ A+ +  YD
Sbjct: 1   MAAIASTL---SLSSTKPQRLFDSSFHGSAISAAPISI----GLKPRSFSVRATTAG-YD 52

Query: 60  LNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAI 119
           LN F FDPIKESIVSREMTRRYMTDMITYA+TDVVVVGAGSAGLS AYE+SKNPN+Q+AI
Sbjct: 53  LNAFTFDPIKESIVSREMTRRYMTDMITYAETDVVVVGAGSAGLSAAYEISKNPNVQVAI 112

Query: 120 IEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSK 179
           IEQSVSPGGGAWLGGQLFSAM+VRKPAH+FLDE+G+ YDEQD YVV+KHAALFTSTIMSK
Sbjct: 113 IEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAALFTSTIMSK 172

Query: 180 LLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG 239
           LLARPNVKLFNAVAAEDLIVKG RVGGVVTNWALV+ NH TQSCMDPNVMEAK+VVSSCG
Sbjct: 173 LLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCG 232

Query: 240 HDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDG 299
           HDGPFGATGVKRLKSIGMI+ VPGMKALDMN+AEDAIVRLTREVVPGMIVTGMEVAEIDG
Sbjct: 233 HDGPFGATGVKRLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDG 292

Query: 300 APRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD 355
           APRMGPTFGAMMISGQKA  LALK+LG PNA+DGT VG + PEL+LAAADSAET D
Sbjct: 293 APRMGPTFGAMMISGQKAGQLALKALGLPNAIDGTLVGNLSPELVLAAADSAETVD 348

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2501187|sp|Q38709.1|THI4_ALNGL RecName: Full=Thiamine thiazole synthase, chloroplastic; AltName: Full=Thiazole biosynthetic enzyme; Flags: Precursor gi|1289204|emb|CAA66064.1| thaizole biosynthetic enzmye [Alnus glutinosa]

 Score =  582 bits (1500), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 290/333 (87%), Positives = 312/333 (93%), Gaps = 1/333 (0%)

Query: 23  SSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTRRYM 82
           SSF+G P++PS +R+QP K+    ++S+S + SPPYDL  F FDPIKESIVSREMTRRYM
Sbjct: 20  SSFYGTPLAPSSIRVQPTKAGAKPSISMSGAPSPPYDLKAFTFDPIKESIVSREMTRRYM 79

Query: 83  TDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVV 142
            DMITYADTDVVVVGAGS+GL C YELSKNP++Q+AIIEQSVSPGGGAWLGGQLFS MVV
Sbjct: 80  MDMITYADTDVVVVGAGSSGLVC-YELSKNPSVQVAIIEQSVSPGGGAWLGGQLFSGMVV 138

Query: 143 RKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG 202
           RKPAH+FLDELGI+YDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG
Sbjct: 139 RKPAHLFLDELGIEYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG 198

Query: 203 RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVP 262
           RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK L+SIGMI+ VP
Sbjct: 199 RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKSLRSIGMIDTVP 258

Query: 263 GMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLAL 322
           GMKALDMN AEDAIVRLTRE+VPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLAL
Sbjct: 259 GMKALDMNVAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLAL 318

Query: 323 KSLGQPNALDGTYVGGVHPELILAAADSAETAD 355
           K+LG PNALDG+YVGG+HPELILAAADSAE AD
Sbjct: 319 KALGLPNALDGSYVGGIHPELILAAADSAEIAD 351

Source: Alnus glutinosa

Species: Alnus glutinosa

Genus: Alnus

Family: Betulaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	356
TAIR|locus:2160130	349	THI1 [Arabidopsis thaliana (ta	0.974	0.994	0.794	5.7e-146
POMBASE|SPBC26H8.01	328	thi2 "thiazole biosynthetic en	0.800	0.868	0.602	6.7e-88
UNIPROTKB|G4NKA9	327	MGG_03098 "Thiazole biosynthet	0.828	0.902	0.575	3.7e-87
CGD|CAL0003455	354	THI4 [Candida albicans (taxid:	0.612	0.615	0.576	2.7e-86
ASPGD|ASPL0000018231	331	thiF [Emericella nidulans (tax	0.738	0.794	0.603	1.2e-83
SGD|S000003376	326	THI4 "Thiazole synthase, abund	0.483	0.527	0.597	5.3e-73

TAIR|locus:2160130 THI1 [Arabidopsis thaliana (taxid:3702)]

 Score = 1426 (507.0 bits), Expect = 5.7e-146, P = 5.7e-146
 Identities = 283/356 (79%), Positives = 313/356 (87%)

Query:     1 MAAMASTAFAPSVSSTT-NKLFDSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYD 59
             MAA+AST    S+SST   +LFDSSFHG+ +S + + +      +P + S+ A+ +  YD
Sbjct:     1 MAAIASTL---SLSSTKPQRLFDSSFHGSAISAAPISI----GLKPRSFSVRATTAG-YD 52

Query:    60 LNTFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAI 119
             LN F FDPIKESIVSREMTRRYMTDMITYA+TD    GAGSAGLS AYE+SKNPN+Q+AI
Sbjct:    53 LNAFTFDPIKESIVSREMTRRYMTDMITYAETDVVVVGAGSAGLSAAYEISKNPNVQVAI 112

Query:   120 IEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSK 179
             IEQSVSPGGGAWLGGQLFSAM+VRKPAH+FLDE+G+ YDEQD YVV+KHAALFTSTIMSK
Sbjct:   113 IEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAALFTSTIMSK 172

Query:   180 LLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG 239
             LLARPNVKLFNAVAAEDLIVKG RVGGVVTNWALV+ NH TQSCMDPNVMEAK+VVSSCG
Sbjct:   173 LLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCG 232

Query:   240 HDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDG 299
             HDGPFGATGVKRLKSIGMI+ VPGMKALDMN+AEDAIVRLTREVVPGMIVTGMEVAEIDG
Sbjct:   233 HDGPFGATGVKRLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDG 292

Query:   300 APRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD 355
             APRMGPTFGAMMISGQKA  LALK+LG PNA+DGT VG + PEL+LAAADSAET D
Sbjct:   293 APRMGPTFGAMMISGQKAGQLALKALGLPNAIDGTLVGNLSPELVLAAADSAETVD 348

GO:0009228 "thiamine biosynthetic process" evidence=IEA;IGI;TAS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0018131 "oxazole or thiazole biosynthetic process" evidence=IGI;IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0009409 "response to cold" evidence=IEP;RCA

GO:0010319 "stromule" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

GO:0006974 "response to DNA damage stimulus" evidence=IMP

POMBASE|SPBC26H8.01 thi2 "thiazole biosynthetic enzyme" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 878 (314.1 bits), Expect = 6.7e-88, P = 6.7e-88
 Identities = 176/292 (60%), Positives = 220/292 (75%)

Query:    52 ASASPPYDLN-TFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYEL- 109
             + A P Y L+ +F F PI+ES VSR MTRRY +D+  YA++D    GAGSAGL+ AY + 
Sbjct:    37 SKAYPTYSLDESFSFAPIRESTVSRAMTRRYFSDLDKYAESDIVIVGAGSAGLTAAYYIG 96

Query:   110 SKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA 169
             ++ P+++IAIIE SV+PGGGAWLGGQLFSAMVVRKPA +FL+E+G+ Y+++ +YVV+KHA
Sbjct:    97 TRRPDLKIAIIEASVAPGGGAWLGGQLFSAMVVRKPADLFLNEIGVPYEDEGDYVVVKHA 156

Query:   170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG-----RVGGVVTNWALVSMNHDTQSCM 224
             ALFTST+M++ LA PNVKLFNA A EDLIVK G     R+ GVVTNW LVS+NH  QSCM
Sbjct:   157 ALFTSTVMARTLALPNVKLFNATAVEDLIVKEGKDGKQRIAGVVTNWTLVSLNHGLQSCM 216

Query:   225 DPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVV 284
             DPN + A +VVS+ GHDGPFGA  VKRL S  ++  +  M+ LDMN AED IV+ TREV 
Sbjct:   217 DPNTINAHLVVSATGHDGPFGAFCVKRLASAQLVSNLHDMRPLDMNRAEDLIVKGTREVF 276

Query:   285 PGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYV 336
             PGMIV GME++E DGA RMGPTFG MM SG KAA  AL    +  A++  Y+
Sbjct:   277 PGMIVGGMELSEFDGANRMGPTFGGMMFSGIKAAQEALAIFDERKAVNEKYL 328

GO:0005634 "nucleus" evidence=IDA

GO:0005739 "mitochondrion" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0009228 "thiamine biosynthetic process" evidence=IMP

GO:0018131 "oxazole or thiazole biosynthetic process" evidence=IMP

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|G4NKA9 MGG_03098 "Thiazole biosynthetic enzyme" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 871 (311.7 bits), Expect = 3.7e-87, P = 3.7e-87
 Identities = 179/311 (57%), Positives = 228/311 (73%)

Query:    28 APMSPSLLRLQP--IKSSRP--NNLSISASASPPYDL----NTFKFDPIKESIVSREMTR 79
             A  SP      P  +K+ +   N  S +A+A+  +DL    N F F PI+ES VSR MT 
Sbjct:     5 AATSPIASHAHPLDVKNGKHQHNADSAAAAAAKLHDLATDWNQFSFSPIRESQVSRAMTS 64

Query:    80 RYMTDMITYADTDXXXXGAGSAGLSCAYELSK-NPNIQIAIIEQSVSPGGGAWLGGQLFS 138
             RY  D+  +A+TD    GAGS GLS A+ L+   P+++I ++E  V+PGGGAWLGGQLFS
Sbjct:    65 RYFADLHAHAETDVVIVGAGSCGLSAAFHLATARPDLRITLVEAGVAPGGGAWLGGQLFS 124

Query:   139 AMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLI 198
             AMV+RKPAH+FLD LG+ Y+++ ++VV+KHAALFTST++SK+LA  NVKLFNA A EDLI
Sbjct:   125 AMVMRKPAHLFLDRLGVAYEDEGSFVVVKHAALFTSTLLSKVLALDNVKLFNATAVEDLI 184

Query:   199 VK--GG-----RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKR 251
              +  GG     RV GVVTNW LVSM+HD QSCMDPN + A VV+S+ GHDGPFGA   KR
Sbjct:   185 TRREGGDNAGVRVAGVVTNWTLVSMHHDDQSCMDPNTINAPVVISTTGHDGPFGAFSAKR 244

Query:   252 LKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMM 311
             L S+  IE++ GM+ LDM SAEDAIV+ TRE+VPG+I+ GME++EIDGA RMGPTFGAM+
Sbjct:   245 LVSMKQIEQLGGMRGLDMQSAEDAIVKRTREIVPGLIIGGMELSEIDGANRMGPTFGAMV 304

Query:   312 ISGQKAAHLAL 322
             +SG KAA  A+
Sbjct:   305 LSGVKAAEEAM 315

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

CGD|CAL0003455 THI4 [Candida albicans (taxid:5476)]

 Score = 657 (236.3 bits), Expect = 2.7e-86, Sum P(2) = 2.7e-86
 Identities = 132/229 (57%), Positives = 166/229 (72%)

Query:    37 LQPIKSSRPNNLSISA-SASPPY-DLNTFKFDPIKESIVSREMTRRYMTDMITYADTDXX 94
             L P  + +  NL   A +    + D N FKF PI+ES VSR MTRRY  D+  +A++D  
Sbjct:    17 LNPKSTQQAINLKSDAKNGKVSFADWNEFKFAPIRESTVSRAMTRRYFADLDKFAESDIV 76

Query:    95 XXGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDEL 153
               GAGSAGLS AY L KN P+++IAIIE SVSPGGG WLGGQLFSAMV+RKPAH+FLD++
Sbjct:    77 IIGAGSAGLSAAYTLGKNRPDLKIAIIEASVSPGGGCWLGGQLFSAMVLRKPAHLFLDDM 136

Query:   154 GIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG------RVGGV 207
             G+DY+++ +YVV+KHAALF ST+MSK+L  PN+KLFNA A EDLI +        R+ GV
Sbjct:   137 GLDYEDEGDYVVVKHAALFMSTLMSKVLQFPNIKLFNATAVEDLITRKDPATNLQRIAGV 196

Query:   208 VTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIG 256
             V NWA   ++HDTQSCMDPN +   VV+S+ GHDGPFGA   KRL+ +G
Sbjct:   197 VVNWA--QLDHDTQSCMDPNTINCNVVLSTSGHDGPFGAFTAKRLEQLG 243

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0009228 "thiamine biosynthetic process" evidence=IEA

GO:0000002 "mitochondrial genome maintenance" evidence=IEA

GO:0052837 "thiazole biosynthetic process" evidence=IEA

GO:0008198 "ferrous iron binding" evidence=IEA

ASPGD|ASPL0000018231 thiF [Emericella nidulans (taxid:162425)]

 Score = 838 (300.0 bits), Expect = 1.2e-83, P = 1.2e-83
 Identities = 166/275 (60%), Positives = 211/275 (76%)

Query:    61 NTFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSK-NPNIQIAI 119
             + FKF PI+ES VSR MTRRY  D+  YA++D    GAGS GLS AY L+K  P+++IAI
Sbjct:    46 DNFKFAPIRESQVSRAMTRRYFQDLDRYAESDVVIVGAGSCGLSTAYVLAKARPDLKIAI 105

Query:   120 IEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQD---NYVVIKHAALFTSTI 176
             IE SVSPGGGAWLGGQLFSAMV+R+PA +FL+ELG+ Y+E     NYVV+KHA+LFTST+
Sbjct:   106 IEASVSPGGGAWLGGQLFSAMVMRRPAELFLNELGVPYEEDPDMPNYVVVKHASLFTSTL 165

Query:   177 MSKLLARPNVKLFNAVAAEDLIVKGG--------RVGGVVTNWALVSMNHDTQSCMDPNV 228
             +SK+L+ PNVKLFNA   EDL+ + G        ++ GVVTNW LV+++HD  SCMDPN 
Sbjct:   166 LSKVLSFPNVKLFNATCVEDLVTRPGPNGNAQEVQIAGVVTNWTLVTLHHDDHSCMDPNT 225

Query:   229 MEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMI 288
             + A V++S+ GHDGPFGA   KRL S+  I+++ GM+ LDMNSAEDAIV+ TREV  G+I
Sbjct:   226 INAPVIISTTGHDGPFGAFSAKRLVSMTTIDKLGGMRGLDMNSAEDAIVKNTREVAKGLI 285

Query:   289 VTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 323
             + GME++EIDG  RMGPTFGAM++SG KAA  AL+
Sbjct:   286 IGGMELSEIDGFNRMGPTFGAMVLSGVKAAEEALR 320

GO:0009228 "thiamine biosynthetic process" evidence=IEA

GO:0000002 "mitochondrial genome maintenance" evidence=IEA

GO:0052837 "thiazole biosynthetic process" evidence=IEA

GO:0008198 "ferrous iron binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

SGD|S000003376 THI4 "Thiazole synthase, abundant protein involved in the formation of the" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 539 (194.8 bits), Expect = 5.3e-73, Sum P(2) = 5.3e-73
 Identities = 107/179 (59%), Positives = 134/179 (74%)

Query:    59 DLNTFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKN-PNIQI 117
             D + FKF PI+ES VSR MT RY  D+  +A +D    GAGS+GLS AY ++KN P++++
Sbjct:    34 DWSDFKFAPIRESTVSRAMTSRYFKDLDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKV 93

Query:   118 AIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIM 177
              IIE SV+PGGG+WLGGQLFSAMV+RKPAH+FL EL I Y+++ +YVV+KHAALF ST++
Sbjct:    94 CIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDYVVVKHAALFISTVL 153

Query:   178 SKLLARPNVKLFNAVAAEDLIV-----KGG-RVGGVVTNWALVSMNHDTQSCMDPNVME 230
             SK+L  PNVKLFNA   EDL+      KG   V GVVTNW LV+  H TQ CMDPNV+E
Sbjct:   154 SKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDPNVIE 212

GO:0005829 "cytosol" evidence=IDA

GO:0052837 "thiazole biosynthetic process" evidence=IDA

GO:0000002 "mitochondrial genome maintenance" evidence=IMP

GO:0008198 "ferrous iron binding" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0009228 "thiamine biosynthetic process" evidence=IEA;IMP

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
G5EAZ2	THI4_EMENI	No assigned EC number	0.6145	0.7387	0.7945	yes	no
F6H9A9	THI41_VITVI	No assigned EC number	0.8541	0.9073	0.9150	yes	no
Q4WMX7	THI4_ASPFU	No assigned EC number	0.6021	0.75	0.8042	yes	no
P32318	THI4_YEAST	No assigned EC number	0.5395	0.75	0.8190	yes	no
O23787	THI4_CITSI	No assigned EC number	1.0	0.9971	0.9971	no	no
Q9UUZ9	THI4_ASPOR	No assigned EC number	0.6273	0.7387	0.8042	yes	no
F6H7K5	THI42_VITVI	No assigned EC number	0.8105	0.9831	0.9859	no	no
C5XNN6	THI41_SORBI	No assigned EC number	0.85	0.8258	0.8305	N/A	no
Q75F65	THI4_ASHGO	No assigned EC number	0.5077	0.8426	0.9063	yes	no
A9SME1	THI42_PHYPA	No assigned EC number	0.7698	0.9691	0.9691	N/A	no
Q38709	THI4_ALNGL	No assigned EC number	0.8708	0.9325	0.9431	N/A	no
Q9UVF8	THI4_UROFA	No assigned EC number	0.5448	0.8455	0.8905	N/A	no
Q41738	THI41_MAIZE	No assigned EC number	0.8610	0.8286	0.8333	N/A	no
Q41739	THI42_MAIZE	No assigned EC number	0.7564	0.9353	0.9406	N/A	no
A8NSD1	THI4_COPC7	No assigned EC number	0.5559	0.8595	0.9776	N/A	no
P40998	THI4_SCHPO	No assigned EC number	0.6095	0.8005	0.8689	yes	no
Q4PC85	THI4_USTMA	No assigned EC number	0.5028	0.8735	0.8591	N/A	no
A9RHW6	THI43_PHYPA	No assigned EC number	0.8493	0.8202	0.8179	N/A	no
Q3V7I4	THI4_YARLI	No assigned EC number	0.6101	0.7612	0.8548	yes	no
Q38814	THI4_ARATH	No assigned EC number	0.8061	0.9747	0.9942	yes	no
A9RHX1	THI41_PHYPA	No assigned EC number	0.8518	0.8314	0.8291	N/A	no
A9SMC8	THI44_PHYPA	No assigned EC number	0.8158	0.8820	0.9154	N/A	no
C5X2M4	THI42_SORBI	No assigned EC number	0.7650	0.9382	0.9488	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	scaffold_802014.1	annotation not avaliable (352 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
	fgenesh2_kg.4__936__AT2G29630.2	annotation not avaliable (645 aa)	•			•			•		0.965
	fgenesh2_kg.1__2499__AT1G22940.1	annotation not avaliable (522 aa)	•			•			•		0.887
	fgenesh2_kg.3__1104__AT3G10690.1	annotation not avaliable (950 aa)							•		0.694
	s12	At4g22720-like protein (353 aa)	•								0.522
	fgenesh2_kg.2__1808__AT1G75330.1	annotation not avaliable (375 aa)							•		0.520
	scaffold_602079.1	annotation not avaliable (204 aa)					•				0.462
	fgenesh2_kg.1__4580__AT1G55670.1	annotation not avaliable (159 aa)				•			•		0.461
	Al_scaffold_0006_3505	annotation not avaliable (175 aa)					•				0.460
	fgenesh2_kg.1__3594__AT1G31330.1	annotation not avaliable (220 aa)				•			•		0.452
	scaffold_803316.1	annotation not avaliable (453 aa)	•						•		0.441

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	356
PLN02661	357	PLN02661, PLN02661, Putative thiazole synthesis	0.0
pfam01946	229	pfam01946, Thi4, Thi4 family	1e-124
COG1635	262	COG1635, THI4, Ribulose 1,5-bisphosphate synthetas	1e-107
TIGR00292	254	TIGR00292, TIGR00292, thiazole biosynthesis enzyme	4e-85
PRK04176	257	PRK04176, PRK04176, ribulose-1,5-biphosphate synth	3e-73
pfam01266	234	pfam01266, DAO, FAD dependent oxidoreductase	4e-07
COG0665	387	COG0665, DadA, Glycine/D-amino acid oxidases (deam	5e-06
COG0654	387	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydrox	6e-06
COG0644	396	COG0644, FixC, Dehydrogenases (flavoproteins) [Ene	6e-06
COG1232	444	COG1232, HemY, Protoporphyrinogen oxidase [Coenzym	1e-05
pfam13450	66	pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-	2e-05
pfam00890	401	pfam00890, FAD_binding_2, FAD binding domain	5e-05
pfam12831	415	pfam12831, FAD_oxidored, FAD dependent oxidoreduct	9e-05
TIGR01988	387	TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hyd	1e-04
PRK11883	451	PRK11883, PRK11883, protoporphyrinogen oxidase; Re	1e-04
COG0029	518	COG0029, NadB, Aspartate oxidase [Coenzyme metabol	2e-04
PRK07364	415	PRK07364, PRK07364, 2-octaprenyl-6-methoxyphenyl h	4e-04
PRK07208	479	PRK07208, PRK07208, hypothetical protein; Provisio	5e-04
COG0579	429	COG0579, COG0579, Predicted dehydrogenase [General	5e-04
PRK07512	513	PRK07512, PRK07512, L-aspartate oxidase; Provision	6e-04
COG1231	450	COG1231, COG1231, Monoamine oxidase [Amino acid tr	6e-04
COG1249	454	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas	6e-04
PRK06292	460	PRK06292, PRK06292, dihydrolipoamide dehydrogenase	0.001
PRK07233	434	PRK07233, PRK07233, hypothetical protein; Provisio	0.001
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	0.001
PRK12834	549	PRK12834, PRK12834, putative FAD-binding dehydroge	0.002
pfam13454	153	pfam13454, NAD_binding_9, FAD-NAD(P)-binding	0.002
PRK07190	487	PRK07190, PRK07190, hypothetical protein; Provisio	0.002
PRK09126	392	PRK09126, PRK09126, hypothetical protein; Provisio	0.002
PRK08294	634	PRK08294, PRK08294, phenol 2-monooxygenase; Provis	0.003
pfam05834	374	pfam05834, Lycopene_cycl, Lycopene cyclase protein	0.004

>gnl|CDD|178267 PLN02661, PLN02661, Putative thiazole synthesis

 Score =  646 bits (1667), Expect = 0.0
 Identities = 286/357 (80%), Positives = 308/357 (86%), Gaps = 5/357 (1%)

Query: 1   MAAMASTAFAPSVSSTTNKLFDS--SFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPY 58
           +AA AS     S     +    S  SF G  +  S     P+  +     S S+S++ PY
Sbjct: 3   IAAAASATSLSSSRELKSSFASSSSSFAGVRLVTS--VRAPLADASAPARSSSSSSTAPY 60

Query: 59  DLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIA 118
           DLN FKF PIKESIVSREMTRRYMTDMITYADTDVV+VGAGSAGLSCAYELSKNPN+++A
Sbjct: 61  DLNNFKFAPIKESIVSREMTRRYMTDMITYADTDVVIVGAGSAGLSCAYELSKNPNVKVA 120

Query: 119 IIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMS 178
           IIEQSVSPGGGAWLGGQLFSAMVVRKPAH+FLDELG+ YDEQ+NYVVIKHAALFTSTIMS
Sbjct: 121 IIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQENYVVIKHAALFTSTIMS 180

Query: 179 KLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSC 238
           KLLARPNVKLFNAVAAEDLIVKG RVGGVVTNWALV+ NHDTQSCMDPNVMEAKVVVSSC
Sbjct: 181 KLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSC 240

Query: 239 GHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEID 298
           GHDGPFGATGVKRLKSIGMI+ VPGMKALDMN+AEDAIVRLTREVVPGMIVTGMEVAEID
Sbjct: 241 GHDGPFGATGVKRLKSIGMIDSVPGMKALDMNAAEDAIVRLTREVVPGMIVTGMEVAEID 300

Query: 299 GAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD 355
           G+PRMGPTFGAMMISGQKAAHLALK+LG PNALDGTY   +HPEL+L AAD  ETAD
Sbjct: 301 GSPRMGPTFGAMMISGQKAAHLALKALGLPNALDGTYKPNLHPELVL-AADDDETAD 356

Length = 357

>gnl|CDD|145231 pfam01946, Thi4, Thi4 family

 Score =  355 bits (912), Expect = e-124
 Identities = 139/234 (59%), Positives = 172/234 (73%), Gaps = 5/234 (2%)

Query: 74  SREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLG 133
           SR +T RY  D++ YA++DVV+VGAG +GL+ AY L+K   +++AIIE+S+SPGGGAW G
Sbjct: 1   SRAITERYFEDLLDYAESDVVIVGAGPSGLTAAYYLAKK-GLKVAIIERSLSPGGGAWGG 59

Query: 134 GQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVA 193
           G LFSAMVVRKPA  FLDE GI Y+++ +YVV+  AA FTST+ SK L  P VK+FNA +
Sbjct: 60  GMLFSAMVVRKPADEFLDEFGIRYEDEGDYVVVADAAEFTSTLASKALQ-PGVKIFNATS 118

Query: 194 AEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLK 253
            EDLI++  RV GVVTNW LV M       MDP  + AK VV + GHD PFGA  VKR+K
Sbjct: 119 VEDLIIRDNRVAGVVTNWTLVEMAGLH---MDPLTIRAKAVVDATGHDAPFGAFCVKRIK 175

Query: 254 SIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTF 307
             G I +VPG ++LDMN AEDAIV+ TREVVPG+ V GM V  +DGAPRMGP F
Sbjct: 176 LEGPIGKVPGERSLDMNVAEDAIVKNTREVVPGLYVAGMAVNAVDGAPRMGPIF 229

This family includes a putative thiamine biosynthetic enzyme. Length = 229

>gnl|CDD|224550 COG1635, THI4, Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

 Score =  314 bits (806), Expect = e-107
 Identities = 112/265 (42%), Positives = 162/265 (61%), Gaps = 8/265 (3%)

Query: 63  FKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQ 122
           FKF P++E  ++R +T RY  D++ Y ++DV++VGAG +GL+ AY L+K   +++AI E+
Sbjct: 3   FKFAPLREVKITRAITERYFEDLLDYLESDVIIVGAGPSGLTAAYYLAKA-GLKVAIFER 61

Query: 123 SVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLA 182
            +S GGG W GG LF+ +VVR+ A   LDE GI Y+E+++   +  +A F S + ++ L 
Sbjct: 62  KLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSAEFASKLAARALD 121

Query: 183 RPNVKLFNAVAAEDLIVKGG-RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD 241
               K+FN V+ ED+IV+   RV GVV NW  V M       +DP  + AK VV + GHD
Sbjct: 122 AG-AKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAG---LHVDPLTIRAKAVVDATGHD 177

Query: 242 GPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAP 301
               +   KR+  +G   EVPG K++     ED +V  T EV PG+ V GM V  + G P
Sbjct: 178 AEVVSFLAKRIPELG--IEVPGEKSMWAERGEDLVVENTGEVYPGLYVAGMAVNAVHGLP 235

Query: 302 RMGPTFGAMMISGQKAAHLALKSLG 326
           RMGP FG M++SG+KAA   L+ L 
Sbjct: 236 RMGPIFGGMLLSGKKAAEEILEKLK 260

Length = 262

>gnl|CDD|232908 TIGR00292, TIGR00292, thiazole biosynthesis enzyme

 Score =  257 bits (659), Expect = 4e-85
 Identities = 109/260 (41%), Positives = 160/260 (61%), Gaps = 11/260 (4%)

Query: 70  ESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG 129
           ES +SR +  RY  D++ YA++DV++VGAG +GL+ AY L+KN  +++ ++E+S++ GGG
Sbjct: 1   ESKISRAIVERYFEDLLDYAESDVIIVGAGPSGLTAAYYLAKN-GLKVCVLERSLAFGGG 59

Query: 130 AWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLF 189
           +W GG LFS +VV KPAH  LDE GI Y+++ +  V+  +A F ST+ SK L     K+F
Sbjct: 60  SWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADSAEFISTLASKALQAG-AKIF 118

Query: 190 NAVAAEDLIVKGGRVG--GVVTNWALVSMN--HDTQSCMDPNVMEAKVVVSSCGHDGPFG 245
           N  + EDLI +   VG  GVV NW+ + +   H     +DP    ++VVV + GHD    
Sbjct: 119 NGTSVEDLITRDDTVGVAGVVINWSAIELAGLH-----VDPLTQRSRVVVDATGHDAEIV 173

Query: 246 ATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGP 305
           A   K++     + ++ G K++    AE AI   TREVVP + V GM VA + G PRMGP
Sbjct: 174 AVCAKKIVLEDQVPKLGGEKSMWAEVAEVAIHENTREVVPNLYVAGMAVAAVHGLPRMGP 233

Query: 306 TFGAMMISGQKAAHLALKSL 325
            FG M++SG+  A   L+ L
Sbjct: 234 IFGGMLLSGKHVAEQILEKL 253

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine. This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine]. Length = 254

>gnl|CDD|235241 PRK04176, PRK04176, ribulose-1,5-biphosphate synthetase; Provisional

 Score =  227 bits (581), Expect = 3e-73
 Identities = 100/264 (37%), Positives = 144/264 (54%), Gaps = 16/264 (6%)

Query: 68  IKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPG 127
           + E  ++R +   Y   ++ Y + DV +VGAG +GL+ AY L+K   +++A+ E+ +S G
Sbjct: 3   LDEVKITRAIVEEYFEKLLDYLEVDVAIVGAGPSGLTAAYYLAKA-GLKVAVFERKLSFG 61

Query: 128 GGAWLGGQLFSAMVVRKPAHIFLDELGIDYDE-QDNYVVIKHAALFTSTIMSKLLARP-- 184
           GG W GG LF+ +VV++ A   LDE GI Y E +D   V            +KL A    
Sbjct: 62  GGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADSVEA-----AAKLAAAAID 116

Query: 185 -NVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242
              K+FN V+ ED+I++   RV GVV NW  V M       +DP  +EAK VV + GHD 
Sbjct: 117 AGAKIFNGVSVEDVILREDPRVAGVVINWTPVEM---AGLHVDPLTIEAKAVVDATGHDA 173

Query: 243 PFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPR 302
              +   ++   +G   EVPG K++     E  +V  T EV PG+ V GM    + G PR
Sbjct: 174 EVVSVLARKGPELG--IEVPGEKSMWAERGEKLVVENTGEVYPGLYVAGMAANAVHGLPR 231

Query: 303 MGPTFGAMMISGQKAAHLALKSLG 326
           MGP FG M++SG+K A L L+ L 
Sbjct: 232 MGPIFGGMLLSGKKVAELILEKLK 255

Length = 257

>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 15/81 (18%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHI--- 148
           DVVV+G G  GLS AYEL++   + + ++E+     G +     L    + ++ A +   
Sbjct: 1   DVVVIGGGIVGLSTAYELAR-RGLSVTLLERGDLASGASGRNAGLLHPGLRKERAPLLAR 59

Query: 149 -----------FLDELGIDYD 158
                       ++ELGID D
Sbjct: 60  LALESRDLWRELIEELGIDCD 80

This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1. Length = 234

>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

 Score = 47.6 bits (113), Expect = 5e-06
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 91  TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA-WLGGQLFSAM 140
            DVV++G G  GLS AY L++     + ++E   + GG A    G + +  
Sbjct: 5   MDVVIIGGGIVGLSAAYYLAER-GADVTVLEAGEAGGGAAGRNAGGILAPW 54

Length = 387

>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

 Score = 47.4 bits (113), Expect = 6e-06
 Identities = 34/147 (23%), Positives = 54/147 (36%), Gaps = 32/147 (21%)

Query: 90  DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS------------VSPGG-------GA 130
             DV +VGAG AGL+ A  L++   + + ++E++            +SP         G 
Sbjct: 2   MLDVAIVGAGPAGLALALALARAG-LDVTLLERAPRELLERGRGIALSPNALRALERLGL 60

Query: 131 W-----LGGQLFSAMVV---RKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLA 182
           W     LG      MVV    +   IF D   +         V+  + L    ++    A
Sbjct: 61  WDRLEALGVPPLHVMVVDDGGRRLLIF-DAAELGRGAL--GYVVPRSDLLN-ALLEAARA 116

Query: 183 RPNVKLFNAVAAEDLIVKGGRVGGVVT 209
            PNV L      E +   G  V   ++
Sbjct: 117 LPNVTLRFGAEVEAVEQDGDGVTVTLS 143

Length = 387

>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]

 Score = 47.5 bits (113), Expect = 6e-06
 Identities = 43/200 (21%), Positives = 68/200 (34%), Gaps = 54/200 (27%)

Query: 90  DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPG----GGAWLG-------GQLFS 138
           + DVV+VGAG AG S A  L+K   + + ++E+   PG     G  L           F 
Sbjct: 3   EYDVVIVGAGPAGSSAARRLAKA-GLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFD 61

Query: 139 AMVVR--KPAHIFL--DELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVK-----LF 189
             + R    A I+   +++ I+    + Y+V +           K LA    +       
Sbjct: 62  EEIERKVTGARIYFPGEKVAIEVPVGEGYIVDRAKFD-------KWLAERAEEAGAELYP 114

Query: 190 NAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGV 249
                  +    G V GV      V                AKVV+          A GV
Sbjct: 115 GTRVTGVIREDDGVVVGVRAGDDEV---------------RAKVVI---------DADGV 150

Query: 250 KRL--KSIGMIEEVPGMKAL 267
                + +G+ +  P   A+
Sbjct: 151 NSALARKLGLKDRKPEDYAI 170

Length = 396

>gnl|CDD|224153 COG1232, HemY, Protoporphyrinogen oxidase [Coenzyme metabolism]

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 13/81 (16%)

Query: 93  VVVVGAGSAGLSCAYELSK-NPNIQIAIIEQSVSPGGGAWL-----GGQLF----SAMVV 142
           + ++G G AGLS AY L K  P++++ + E     GG   L      G LF       + 
Sbjct: 3   IAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGG--LLRTVKIDGFLFERGPHHFLA 60

Query: 143 RKPAHI-FLDELGIDYDEQDN 162
           RK   +  + ELG++     N
Sbjct: 61  RKEEILDLIKELGLEDKLLWN 81

Length = 444

>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain

 Score = 41.7 bits (99), Expect = 2e-05
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 9/61 (14%)

Query: 95  VVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW---LGGQLFSAMVVRKPAHIFLD 151
           +VGAG +GL  AY L+K     + ++E+    GG A+     G           AHIF  
Sbjct: 1   IVGAGLSGLVAAYLLAKR-GKDVLVLEKRDRIGGNAYSERDPG-----YRHDYGAHIFHT 54

Query: 152 E 152
            
Sbjct: 55  S 55

Length = 66

>gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 9/81 (11%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQ-------SVSPGGGAWLGGQLFSAMVVRK 144
           DVVV+G+G AGL+ A E ++   +++A++E+       +    GG    G       +  
Sbjct: 1   DVVVIGSGLAGLAAALEAAEAG-LKVAVVEKGQPFGGATAWSSGGIDALGTPPQGAGIDS 59

Query: 145 PAHIFLDEL-GIDYDEQDNYV 164
           P     D L G+D      YV
Sbjct: 60  PDLHPTDTLKGLDELADHPYV 80

This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. Length = 401

>gnl|CDD|221798 pfam12831, FAD_oxidored, FAD dependent oxidoreductase

 Score = 43.7 bits (104), Expect = 9e-05
 Identities = 33/136 (24%), Positives = 51/136 (37%), Gaps = 30/136 (22%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVV------RKP 145
           DVVVVG G AG++ A   ++    ++ ++E+        WLGG   S +V        + 
Sbjct: 1   DVVVVGGGPAGVAAAIAAARL-GAKVLLVER------RGWLGGMATSGLVGTDDGNYDRG 53

Query: 146 AHI------FLDELGIDYDEQDNYVVIK-----HAALFTSTIMSKLLARPNVK-LFNAVA 193
             I      FL  L        N            A     ++ ++LA   V  L +   
Sbjct: 54  QVIGGIAREFLRRLRARGGPLGNRTSGPWPFDPEVA---KLVLDEMLAEAGVTVLLHTRV 110

Query: 194 AEDLIVKGGRVGGVVT 209
               +VK GR+ GV  
Sbjct: 111 VG--VVKEGRITGVTV 124

This family of proteins contains FAD dependent oxidoreductases and related proteins. Length = 415

>gnl|CDD|233671 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

 Score = 43.3 bits (103), Expect = 1e-04
 Identities = 13/35 (37%), Positives = 24/35 (68%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSP 126
           D+V+VG G  GL+ A  L+++  +++A+IE +  P
Sbjct: 1   DIVIVGGGPVGLALALALARSGGLKVALIEATPLP 35

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4,) and UbiF (which acts at position 5,). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) making it difficult to ascribe a specific activity to each one. Eukaryotes appear to have only a single homolog in this subfamily (COQ6,) which complements UbiH, but also possess a non-orthologous gene, COQ7 which complements UbiF [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 387

>gnl|CDD|237009 PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed

 Score = 43.3 bits (103), Expect = 1e-04
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 93  VVVVGAGSAGLSCAYELSK-NPNIQIAIIEQSVSPGG 128
           V ++G G  GLS AY L K  P+  I ++E S   GG
Sbjct: 3   VAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGG 39

Length = 451

>gnl|CDD|223108 COG0029, NadB, Aspartate oxidase [Coenzyme metabolism]

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 39/172 (22%), Positives = 67/172 (38%), Gaps = 47/172 (27%)

Query: 85  MITYADTDVVVVGAGSAGLSCAYELSKNPNIQI---AIIEQSVS---PGG---------- 128
              +   DV+++G+G AGL+ A  L+ +  + +     + +S S    GG          
Sbjct: 2   NTDFEHPDVLIIGSGLAGLTAALSLAPSFRVTVLTKGPLGESSSYWAQGGIAAALSEDDS 61

Query: 129 -----------GAWLGGQLFSAMVVR--KPAHIFLDELGIDYD--EQDNYVV-------- 165
                      GA L  +     +V     A  +L +LG+ +D  E     +        
Sbjct: 62  PELHVADTLAAGAGLCDEEAVEFIVSEAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSR 121

Query: 166 --IKHAA-----LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGR-VGGVVT 209
             I HAA        + ++ K+  RPN+ +     A DLI++ G  V GV+ 
Sbjct: 122 RRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGIGVAGVLV 173

Length = 518

>gnl|CDD|236001 PRK07364, PRK07364, 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 83  TDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIE 121
                    DV +VG G  GL+ A  L K+  ++IA+IE
Sbjct: 11  LPSTRSLTYDVAIVGGGIVGLTLAAAL-KDSGLRIALIE 48

Length = 415

>gnl|CDD|235967 PRK07208, PRK07208, hypothetical protein; Provisional

 Score = 41.4 bits (98), Expect = 5e-04
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 91  TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG 128
             VV++GAG AGL+ AYEL K     + ++E     GG
Sbjct: 5   KSVVIIGAGPAGLTAAYELLKR-GYPVTVLEADPVVGG 41

Length = 479

>gnl|CDD|223652 COG0579, COG0579, Predicted dehydrogenase [General function prediction only]

 Score = 41.5 bits (98), Expect = 5e-04
 Identities = 15/34 (44%), Positives = 25/34 (73%), Gaps = 1/34 (2%)

Query: 90  DTDVVVVGAGSAGLSCAYELSK-NPNIQIAIIEQ 122
           D DVV++G G  G + AYELS+  P++ +A++E+
Sbjct: 3   DYDVVIIGGGIMGAATAYELSEYEPDLSVALLEK 36

Length = 429

>gnl|CDD|236036 PRK07512, PRK07512, L-aspartate oxidase; Provisional

 Score = 41.4 bits (98), Expect = 6e-04
 Identities = 41/179 (22%), Positives = 61/179 (34%), Gaps = 57/179 (31%)

Query: 82  MTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG----AWLGGQLF 137
           M + +       V+VG G AGL  A +L+  P + +     S +P G     AW  G + 
Sbjct: 1   MMEDLRILTGRPVIVGGGLAGLMAALKLAPRPVVVL-----SPAPLGEGASSAWAQGGIA 55

Query: 138 SAM------------------------VVRK-----PAHIF-LDELGI--DYDEQDNYVV 165
           +A+                        V        PA I  L  LG+  D D      +
Sbjct: 56  AALGPDDSPALHAADTLAAGAGLCDPAVAALITAEAPAAIEDLLRLGVPFDRDADGRLAL 115

Query: 166 IKHAA------------LFTSTIMSKLLAR----PNVKLFNAVAAEDLIVKGGRVGGVV 208
              AA               + IM  L+A     P++ +     A  L+V  G V GV+
Sbjct: 116 GLEAAHSRRRIVHVGGDGAGAAIMRALIAAVRATPSITVLEGAEARRLLVDDGAVAGVL 174

Length = 513

>gnl|CDD|224152 COG1231, COG1231, Monoamine oxidase [Amino acid transport and metabolism]

 Score = 41.3 bits (97), Expect = 6e-04
 Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 91  TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLG 133
            DV++VGAG AGLS AYEL K    Q+ I+E     GG +   
Sbjct: 8   ADVIIVGAGLAGLSAAYELKKA-GYQVQILEARDRVGGRSLTA 49

Length = 450

>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

 Score = 41.0 bits (97), Expect = 6e-04
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 4/44 (9%)

Query: 85  MITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG 128
           M  Y   DVVV+GAG AG   A   ++   +++A++E+    GG
Sbjct: 2   MKEY---DVVVIGAGPAGYVAAIRAAQLG-LKVALVEKGERLGG 41

Length = 454

>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated

 Score = 40.2 bits (95), Expect = 0.001
 Identities = 29/130 (22%), Positives = 45/130 (34%), Gaps = 37/130 (28%)

Query: 85  MITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQ--------- 135
           M  Y   DV+V+GAG AG   A   +K    ++A+IE       G   GG          
Sbjct: 1   MEKY---DVIVIGAGPAGYVAARRAAK-LGKKVALIE------KGPL-GGTCLNVGCIPS 49

Query: 136 ---LFSAMVVRKPAH-----IFLDELGIDYDEQDNYVVIKHA----ALFTSTIMSKLLAR 183
              + +A    +  H     I  D   ID+ +     V+         F   ++  L  +
Sbjct: 50  KALIAAAEAFHEAKHAEEFGIHADGPKIDFKK-----VMARVRRERDRFVGGVVEGLEKK 104

Query: 184 PNVKLFNAVA 193
           P +      A
Sbjct: 105 PKIDKIKGTA 114

Length = 460

>gnl|CDD|235977 PRK07233, PRK07233, hypothetical protein; Provisional

 Score = 40.3 bits (95), Expect = 0.001
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 93  VVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG 128
           + +VG G AGL+ AY L+K    ++ + E     GG
Sbjct: 2   IAIVGGGIAGLAAAYRLAKR-GHEVTVFEADDQLGG 36

Length = 434

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 5/69 (7%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLD 151
           DVV++G G AGL+ A  L     +++A+IE+    GG  +  G L   +++   A     
Sbjct: 1   DVVIIGGGPAGLAAAIRL-ARLGLKVALIERE---GGTCYNRGCLPKKLLLEV-AEGLEL 55

Query: 152 ELGIDYDEQ 160
            +G+   E+
Sbjct: 56  AIGLALPEE 64

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|183782 PRK12834, PRK12834, putative FAD-binding dehydrogenase; Reviewed

 Score = 39.9 bits (94), Expect = 0.002
 Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 5/48 (10%)

Query: 90  DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLF 137
           D DV+VVGAG AGL  A EL+     ++ +++Q       A LGGQ F
Sbjct: 4   DADVIVVGAGLAGLVAAAELADA-GKRVLLLDQE----NEANLGGQAF 46

Length = 549

>gnl|CDD|222141 pfam13454, NAD_binding_9, FAD-NAD(P)-binding

 Score = 38.0 bits (89), Expect = 0.002
 Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 3/45 (6%)

Query: 94  VVVGAGSAGLSCAYELSKNPN---IQIAIIEQSVSPGGGAWLGGQ 135
            ++GAG  GLS    L +      + I + + S    GG W   Q
Sbjct: 1   AIIGAGPRGLSVLERLLRRAPDRPLDITVFDPSPPGAGGVWRTDQ 45

Length = 153

>gnl|CDD|235955 PRK07190, PRK07190, hypothetical protein; Provisional

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 91  TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSP 126
           TDVV++GAG  GL CAY L +   +   I+++S  P
Sbjct: 6   TDVVIIGAGPVGLMCAY-LGQLCGLNTVIVDKSDGP 40

Length = 487

>gnl|CDD|236385 PRK09126, PRK09126, hypothetical protein; Provisional

 Score = 39.5 bits (93), Expect = 0.002
 Identities = 15/33 (45%), Positives = 24/33 (72%), Gaps = 1/33 (3%)

Query: 91  TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS 123
           +D+VVVGAG AGLS A  L+ +  +++ +IE+ 
Sbjct: 4   SDIVVVGAGPAGLSFARSLAGS-GLKVTLIERQ 35

Length = 392

>gnl|CDD|236223 PRK08294, PRK08294, phenol 2-monooxygenase; Provisional

 Score = 38.8 bits (91), Expect = 0.003
 Identities = 15/32 (46%), Positives = 22/32 (68%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS 123
           DV++VG G AGL+ A +LS  P+I   I+E+ 
Sbjct: 34  DVLIVGCGPAGLTLAAQLSAFPDITTRIVERK 65

Length = 634

>gnl|CDD|218770 pfam05834, Lycopene_cycl, Lycopene cyclase protein

 Score = 38.4 bits (90), Expect = 0.004
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 92  DVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGA 130
           D+V+VGAG AGL  A  L +  P +++ +I+    P    
Sbjct: 1   DLVIVGAGLAGLLLALRLRQARPGLRVLLIDAGPGPPFPN 40

This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare. Length = 374

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	356
PLN02661	357	Putative thiazole synthesis	100.0
KOG2960	328	consensus Protein involved in thiamine biosynthesi	100.0
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	100.0
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	100.0
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	100.0
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	100.0
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.88
COG2081	408	Predicted flavoproteins [General function predicti	99.86
TIGR00275	400	flavoprotein, HI0933 family. The model when search	99.65
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	99.62
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	99.6
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	99.6
PRK06175	433	L-aspartate oxidase; Provisional	99.59
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	99.59
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	99.59
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	99.58
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	99.57
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	99.57
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	99.56
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	99.56
PLN02815	594	L-aspartate oxidase	99.56
PRK07121	492	hypothetical protein; Validated	99.56
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	99.55
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	99.55
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	99.54
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	99.54
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	99.54
PRK08274	466	tricarballylate dehydrogenase; Validated	99.54
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	99.54
PRK07395	553	L-aspartate oxidase; Provisional	99.54
PRK07804	541	L-aspartate oxidase; Provisional	99.53
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	99.53
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	99.53
PRK09077	536	L-aspartate oxidase; Provisional	99.51
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	99.51
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	99.51
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	99.51
PRK10157	428	putative oxidoreductase FixC; Provisional	99.51
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	99.5
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	99.5
PRK07512	513	L-aspartate oxidase; Provisional	99.49
PRK08275	554	putative oxidoreductase; Provisional	99.48
PRK10015	429	oxidoreductase; Provisional	99.48
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	99.48
PRK06185	407	hypothetical protein; Provisional	99.47
PRK08401	466	L-aspartate oxidase; Provisional	99.47
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	99.46
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	99.46
PRK08071	510	L-aspartate oxidase; Provisional	99.45
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.45
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	99.45
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.44
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	99.44
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	99.43
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	99.43
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.43
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	99.43
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.43
PRK08013	400	oxidoreductase; Provisional	99.43
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	99.42
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.41
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	99.41
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	99.4
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	99.39
PLN02546	558	glutathione reductase	99.39
PRK07045	388	putative monooxygenase; Reviewed	99.39
PRK12842	574	putative succinate dehydrogenase; Reviewed	99.39
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	99.38
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	99.38
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.38
PRK09126	392	hypothetical protein; Provisional	99.38
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	99.38
PTZ00058	561	glutathione reductase; Provisional	99.38
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	99.37
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	99.36
PRK08244	493	hypothetical protein; Provisional	99.36
PRK06184	502	hypothetical protein; Provisional	99.35
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.35
PRK12839	572	hypothetical protein; Provisional	99.35
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	99.35
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	99.35
PRK06126	545	hypothetical protein; Provisional	99.35
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	99.34
COG0579	429	Predicted dehydrogenase [General function predicti	99.34
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	99.34
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	99.34
PRK07190	487	hypothetical protein; Provisional	99.33
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	99.33
PRK14694	468	putative mercuric reductase; Provisional	99.33
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.33
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	99.33
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	99.33
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	99.32
PLN02985	514	squalene monooxygenase	99.32
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.32
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	99.32
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	99.32
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	99.32
PRK06370	463	mercuric reductase; Validated	99.31
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	99.31
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	99.31
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.3
PLN02507	499	glutathione reductase	99.3
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	99.3
PRK06834	488	hypothetical protein; Provisional	99.3
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	99.3
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	99.3
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	99.3
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	99.29
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	99.29
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	99.29
PRK11728	393	hydroxyglutarate oxidase; Provisional	99.28
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	99.28
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	99.28
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	99.28
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	99.28
PRK08132	547	FAD-dependent oxidoreductase; Provisional	99.27
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	99.27
PRK07236	386	hypothetical protein; Provisional	99.26
PRK08163	396	salicylate hydroxylase; Provisional	99.25
PRK06116	450	glutathione reductase; Validated	99.25
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	99.23
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	99.23
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	99.23
PLN02697	529	lycopene epsilon cyclase	99.23
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	99.23
PRK07588	391	hypothetical protein; Provisional	99.22
PRK13748	561	putative mercuric reductase; Provisional	99.22
PRK06847	375	hypothetical protein; Provisional	99.22
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	99.21
PRK06475	400	salicylate hydroxylase; Provisional	99.21
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	99.21
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	99.21
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.21
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	99.21
PRK11445	351	putative oxidoreductase; Provisional	99.2
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	99.2
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	99.19
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	99.19
PRK07538	413	hypothetical protein; Provisional	99.19
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	99.18
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	99.18
PLN02463	447	lycopene beta cyclase	99.18
PRK14727	479	putative mercuric reductase; Provisional	99.18
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	99.17
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	99.17
PRK06996	398	hypothetical protein; Provisional	99.17
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	99.17
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	99.17
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	99.17
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	99.16
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	99.16
PTZ00367	567	squalene epoxidase; Provisional	99.16
PRK05868	372	hypothetical protein; Validated	99.15
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	99.15
TIGR02053	463	MerA mercuric reductase. This model represents the	99.15
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	99.14
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	99.14
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	99.13
PRK08294	634	phenol 2-monooxygenase; Provisional	99.13
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	99.12
PLN02464	627	glycerol-3-phosphate dehydrogenase	99.11
PTZ00052	499	thioredoxin reductase; Provisional	99.11
PRK06753	373	hypothetical protein; Provisional	99.11
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	99.11
PTZ00153	659	lipoamide dehydrogenase; Provisional	99.11
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	99.09
PRK07846	451	mycothione reductase; Reviewed	99.09
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	99.08
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	99.08
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	99.07
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	99.06
PTZ00383	497	malate:quinone oxidoreductase; Provisional	99.05
PRK07845	466	flavoprotein disulfide reductase; Reviewed	99.04
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	99.03
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	99.03
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	99.0
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	99.0
PRK05257	494	malate:quinone oxidoreductase; Validated	98.98
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	98.98
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	98.97
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.96
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.95
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	98.95
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	98.94
PRK10262	321	thioredoxin reductase; Provisional	98.94
COG3573	552	Predicted oxidoreductase [General function predict	98.93
PRK13339	497	malate:quinone oxidoreductase; Reviewed	98.93
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	98.91
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	98.91
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	98.9
PRK13977	576	myosin-cross-reactive antigen; Provisional	98.9
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	98.89
PRK05675	570	sdhA succinate dehydrogenase flavoprotein subunit;	98.88
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	98.86
PRK09897	534	hypothetical protein; Provisional	98.85
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	98.83
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	98.83
PRK07233	434	hypothetical protein; Provisional	98.82
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	98.81
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	98.81
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	98.79
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	98.79
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	98.78
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	98.77
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	98.75
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	98.74
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	98.74
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	98.73
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	98.72
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	98.72
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	98.71
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	98.71
PRK02106	560	choline dehydrogenase; Validated	98.7
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	98.69
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	98.68
KOG2852	380	consensus Possible oxidoreductase [General functio	98.67
TIGR01816	565	sdhA_forward succinate dehydrogenase, flavoprotein	98.67
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	98.63
PRK12779	944	putative bifunctional glutamate synthase subunit b	98.62
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	98.62
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	98.61
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	98.61
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	98.6
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	98.59
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	98.55
PRK12831	464	putative oxidoreductase; Provisional	98.54
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	98.53
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	98.52
PLN02785	587	Protein HOTHEAD	98.51
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	98.5
KOG1238	623	consensus Glucose dehydrogenase/choline dehydrogen	98.47
PLN02612	567	phytoene desaturase	98.47
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	98.46
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.46
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	98.45
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	98.44
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	98.44
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	98.43
PRK13512	438	coenzyme A disulfide reductase; Provisional	98.43
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	98.42
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	98.39
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	98.39
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	98.37
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	98.36
KOG2853	509	consensus Possible oxidoreductase [General functio	98.35
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.35
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	98.34
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	98.34
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	98.33
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	98.31
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	98.28
PRK12770	352	putative glutamate synthase subunit beta; Provisio	98.28
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	98.27
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	98.24
PLN02852	491	ferredoxin-NADP+ reductase	98.24
PLN02268	435	probable polyamine oxidase	98.23
PRK12814	652	putative NADPH-dependent glutamate synthase small	98.23
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	98.21
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	98.21
PRK06567	1028	putative bifunctional glutamate synthase subunit b	98.2
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.19
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	98.18
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	98.18
PRK07208	479	hypothetical protein; Provisional	98.18
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.16
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.16
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	98.14
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	98.13
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.12
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	98.12
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.11
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	98.1
PRK06370	463	mercuric reductase; Validated	98.09
TIGR02053	463	MerA mercuric reductase. This model represents the	98.09
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.08
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.08
PRK06116	450	glutathione reductase; Validated	98.08
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	98.08
PTZ00188	506	adrenodoxin reductase; Provisional	98.07
PRK11883	451	protoporphyrinogen oxidase; Reviewed	98.07
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.06
COG2907	447	Predicted NAD/FAD-binding protein [General functio	98.06
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	98.06
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.05
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	98.04
PRK13984	604	putative oxidoreductase; Provisional	98.03
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	98.03
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	98.02
PLN02576	496	protoporphyrinogen oxidase	98.02
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.02
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	97.99
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	97.99
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.98
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	97.96
KOG2403	642	consensus Succinate dehydrogenase, flavoprotein su	97.96
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	97.95
PRK14989	847	nitrite reductase subunit NirD; Provisional	97.94
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	97.94
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	97.93
PLN02507	499	glutathione reductase	97.92
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.92
PRK14727	479	putative mercuric reductase; Provisional	97.92
PRK14989	847	nitrite reductase subunit NirD; Provisional	97.91
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	97.91
PLN02676	487	polyamine oxidase	97.91
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	97.91
PRK14694	468	putative mercuric reductase; Provisional	97.91
PRK10262	321	thioredoxin reductase; Provisional	97.89
PLN02568	539	polyamine oxidase	97.89
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	97.88
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	97.88
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	97.88
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	97.87
PRK12416	463	protoporphyrinogen oxidase; Provisional	97.87
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	97.86
PRK13748	561	putative mercuric reductase; Provisional	97.85
COG3349	485	Uncharacterized conserved protein [Function unknow	97.83
PRK07846	451	mycothione reductase; Reviewed	97.82
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	97.82
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	97.8
PTZ00058	561	glutathione reductase; Provisional	97.8
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	97.79
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	97.77
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	97.75
PRK13512	438	coenzyme A disulfide reductase; Provisional	97.74
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	97.73
PTZ00052	499	thioredoxin reductase; Provisional	97.72
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.72
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	97.7
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	97.7
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	97.69
PLN02529	738	lysine-specific histone demethylase 1	97.67
PLN02546	558	glutathione reductase	97.66
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	97.65
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	97.63
PTZ00153	659	lipoamide dehydrogenase; Provisional	97.63
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	97.62
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	97.62
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	97.61
PLN02328	808	lysine-specific histone demethylase 1 homolog	97.61
PLN02487	569	zeta-carotene desaturase	97.58
PRK12831	464	putative oxidoreductase; Provisional	97.56
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	97.52
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	97.46
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	97.44
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	97.38
PLN03000	881	amine oxidase	97.38
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	97.31
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	97.26
PLN02976	1713	amine oxidase	97.23
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	97.23
PRK12770	352	putative glutamate synthase subunit beta; Provisio	97.2
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	97.19
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	97.15
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	97.14
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	97.11
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	97.08
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	97.05
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	97.02
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	97.01
KOG3923	342	consensus D-aspartate oxidase [Amino acid transpor	96.98
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	96.91
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	96.9
PRK12779	944	putative bifunctional glutamate synthase subunit b	96.86
KOG1439	440	consensus RAB proteins geranylgeranyltransferase c	96.73
PRK13984	604	putative oxidoreductase; Provisional	96.44
PRK12814	652	putative NADPH-dependent glutamate synthase small	96.44
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	96.42
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	96.4
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	96.37
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	96.24
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	96.21
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	96.05
PLN02852	491	ferredoxin-NADP+ reductase	95.91
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	95.9
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	95.69
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	95.62
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	95.61
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	95.12
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	94.82
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	94.55
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	94.19
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	94.14
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	93.97
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	93.92
COG4716	587	Myosin-crossreactive antigen [Function unknown]	93.84
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	93.61
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.55
KOG2755	334	consensus Oxidoreductase [General function predict	93.46
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	93.44
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.37
COG0569	225	TrkA K+ transport systems, NAD-binding component [	93.2
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	93.03
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	92.86
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	92.37
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	92.36
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	92.09
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	92.01
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	91.94
KOG4405	547	consensus GDP dissociation inhibitor [Signal trans	91.78
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	91.71
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	91.7
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.67
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	91.59
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	91.56
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	91.54
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	91.11
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	90.85
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	90.8
PRK06719	157	precorrin-2 dehydrogenase; Validated	90.71
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	90.69
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	90.6
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	90.51
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	90.35
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	90.33
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	90.12
PRK15116	268	sulfur acceptor protein CsdL; Provisional	89.98
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	89.94
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	89.93
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	89.66
PRK06567	1028	putative bifunctional glutamate synthase subunit b	89.56
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	89.47
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	89.14
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	89.14
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	88.96
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	88.9
PTZ00082	321	L-lactate dehydrogenase; Provisional	88.9
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	88.88
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	88.82
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	88.66
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	88.4
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	88.34
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	88.24
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	87.96
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	87.88
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	87.87
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	87.82
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	87.73
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	87.68
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	87.55
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	87.16
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	86.96
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	86.91
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	86.62
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	86.61
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	86.6
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	86.31
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	86.2
PRK12548	289	shikimate 5-dehydrogenase; Provisional	86.08
PRK04148	134	hypothetical protein; Provisional	85.85
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	85.8
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	85.68
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	85.66
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	85.48
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	85.24
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	84.92
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	84.89
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	84.79
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	84.66
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	84.53
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	84.51
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	84.29
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	84.12
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	84.1
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	83.95
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	83.95
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	83.93
PRK06223	307	malate dehydrogenase; Reviewed	83.72
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	83.66
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	83.51
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	83.44
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	83.38
PRK07576	264	short chain dehydrogenase; Provisional	83.36
PLN02572	442	UDP-sulfoquinovose synthase	82.9
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	82.8
PRK08306	296	dipicolinate synthase subunit A; Reviewed	82.79
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	82.75
PRK07774	250	short chain dehydrogenase; Provisional	82.65
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	82.53
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	82.49
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	82.47
PTZ00117	319	malate dehydrogenase; Provisional	82.29
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	82.27
PRK11730	715	fadB multifunctional fatty acid oxidation complex	82.27
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	82.21
PLN02353	473	probable UDP-glucose 6-dehydrogenase	82.17
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	82.13
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	82.11
PRK10669	558	putative cation:proton antiport protein; Provision	81.97
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	81.93
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	81.91
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	81.91
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	81.88
PRK07417	279	arogenate dehydrogenase; Reviewed	81.87
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	81.86
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	81.79
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	81.75
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	81.55
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	81.51

>PLN02661 Putative thiazole synthesis

Probab=100.00  E-value=2.1e-54  Score=405.70  Aligned_cols=350  Identities=81%  Similarity=1.189  Sum_probs=299.0

Q ss_pred             ccccccccccccccCccccc--ccccCCCCCCcccccCccccCCCCCCCCcccCCCCCCCCCCccCCCccchhhHHHHHH
Q 018414            3 AMASTAFAPSVSSTTNKLFD--SSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTRR   80 (356)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   80 (356)
                      ++++..++++......++..  ++|++.++.+........ .+ .........+.++|||+.|+|.+++|..+++.|.++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~f~~~~e~~is~~i~~~   82 (357)
T PLN02661          5 AAASATSLSSSRELKSSFASSSSSFAGVRLVTSVRAPLAD-AS-APARSSSSSSTAPYDLNNFKFAPIKESIVSREMTRR   82 (357)
T ss_pred             HHhHhhhhccccccccccccccccccCccccccccCCccc-cc-cccccccCCCCCCCccccccceechhhHhhccchHh
Confidence            34444444444444445554  788888888665433311 11 122233335789999999999999999999999999


Q ss_pred             HhhhcccCCcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCcccc
Q 018414           81 YMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQ  160 (356)
Q Consensus        81 ~~~~m~~~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~  160 (356)
                      |+.++.+..++||+|||+|++|+++|+.|++++|++|+||||...+||+.|.++.++..++.+....++|+++|++|+..
T Consensus        83 ~~~~l~~~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~  162 (357)
T PLN02661         83 YMTDMITYADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQ  162 (357)
T ss_pred             HhhhhhhcccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccC
Confidence            99999888899999999999999999999975589999999999999999999988887777777888999999999877


Q ss_pred             CCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCC
Q 018414          161 DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGH  240 (356)
Q Consensus       161 ~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg  240 (356)
                      ++|+...+...+...|++++.++.|++++.++.+++++.+++++.|+.++|..+..++..+.+.+...|+||.||+|||+
T Consensus       163 dgy~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh  242 (357)
T PLN02661        163 ENYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGH  242 (357)
T ss_pred             CCeeEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCC
Confidence            77777778888888999988877899999999999999999999999998866555554443345678999999999999


Q ss_pred             CCCCCCccchhhhccCcccccccccccccccccceeeeccccccCceeEeceEEEEecCCcccCCccceeeeehHHHHHH
Q 018414          241 DGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHL  320 (356)
Q Consensus       241 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~~~~~~~~~~g~~~~~~~~g~~l~sG~~~~~l  320 (356)
                      .++.++.+++++..+|+..++|++.++|++..|+.+++.++|++||+|+.||++..++|.+||||+||.|++||++++++
T Consensus       243 ~g~~ga~~~~~~~~~g~~~~~pg~~~~~~~~~e~~~v~~t~ev~pgl~~~gm~~~~~~g~~rmgp~fg~m~~sg~k~a~~  322 (357)
T PLN02661        243 DGPFGATGVKRLKSIGMIDSVPGMKALDMNAAEDAIVRLTREVVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHL  322 (357)
T ss_pred             CCcchhhhhhcccccCCccCCCCccccchhhHHHHHHhccCcccCCEEEeccchhhhcCCCccCchhHhHHhhhHHHHHH
Confidence            99999999999998999888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCCCCcccccCCchhhhhccccccccC
Q 018414          321 ALKSLGQPNALDGTYVGGVHPELILAAADSAETAD  355 (356)
Q Consensus       321 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (356)
                      |+++|+.+++.|++...++|||+|| +++++|++|
T Consensus       323 ~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  356 (357)
T PLN02661        323 ALKALGLPNALDGTYKPNLHPELVL-AADDDETAD  356 (357)
T ss_pred             HHHHHccchhhcchhhhccchhhhh-ccCcccccc
Confidence            9999999999999988899999999 888889886

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=100.00  E-value=1.4e-52  Score=358.44  Aligned_cols=322  Identities=64%  Similarity=1.000  Sum_probs=292.3

Q ss_pred             CcccccccccccccccCcccccccccCCCCCCcccccCccccCCCCCCCCcccCCCCCCCCCCccCCCccchhhHHHHHH
Q 018414            1 MAAMASTAFAPSVSSTTNKLFDSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTRR   80 (356)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   80 (356)
                      |+|.+++.+.|++++.  ++++++|+++.+.+...+..-+            ...-..||.+|+|+|++|++++|+|++|
T Consensus         1 m~Ata~~ts~sa~k~~--~~~d~~~H~s~~~s~p~~~~l~------------~~~~s~d~s~F~FaPIrEStVSRaMTrR   66 (328)
T KOG2960|consen    1 MSATATATSTSASKPQ--RLFDSQLHGSALNSTPVTHCLS------------DIVKSEDWSDFKFAPIRESTVSRAMTRR   66 (328)
T ss_pred             CCccceeccccccCcc--cchhhhhhhhhhccCccccccc------------ccccccccccccccchhHHHHHHHHHHH
Confidence            6677777777776665  7888999988766433221111            1122346778999999999999999999


Q ss_pred             HhhhcccCCcccEEEECCCHHHHHHHHHhhc-CCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccc
Q 018414           81 YMTDMITYADTDVVVVGAGSAGLSCAYELSK-NPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDE  159 (356)
Q Consensus        81 ~~~~m~~~~~~DVvIIGgG~aGl~aA~~La~-~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~  159 (356)
                      |+.++.+..+.||+|||+|.+||++||..++ +|.++|.|||..-.+||+.|.+|++++.++.+.+..-+|+++|++|+.
T Consensus        67 Yf~DldkyAesDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWLGGQLFSAMvvRKPAhLFL~EigvpYed  146 (328)
T KOG2960|consen   67 YFKDLDKYAESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWLGGQLFSAMVVRKPAHLFLQEIGVPYED  146 (328)
T ss_pred             HHHHHHhhhccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcccccchhhhhhhhcChHHHHHHHhCCCccc
Confidence            9999998888999999999999999999995 689999999999999999999999999999999999999999999999


Q ss_pred             cCCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCC-----eEEEEEEcceeeecccCCCCCCCCeEEEcCEE
Q 018414          160 QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG-----RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVV  234 (356)
Q Consensus       160 ~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~-----~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~V  234 (356)
                      .++|.+.+|...|...++.+.+..+|++++..+.|++++...+     ++.||.++|.++..|+.++.|.+...+++..|
T Consensus       147 egdYVVVKHAALFtSTvmsk~LalPNVKLFNAtavEDLivk~g~~g~~rvaGVVTNWtLV~qnHgtQsCMDPNviea~~v  226 (328)
T KOG2960|consen  147 EGDYVVVKHAALFTSTVMSKVLALPNVKLFNATAVEDLIVKPGEKGEVRVAGVVTNWTLVTQNHGTQSCMDPNVIEAAVV  226 (328)
T ss_pred             CCCEEEEeeHHHHHHHHHHHHhcCCcceeechhhhhhhhcccCcCCceEEEEEEeeeEEeeeccCccccCCCCeeeEEEE
Confidence            9999999999999999999999999999999999999987632     68899999999999999999999999999999


Q ss_pred             EEcCCCCCCCCCccchhhhccCcccccccccccccccccceeeeccccccCceeEeceEEEEecCCcccCCccceeeeeh
Q 018414          235 VSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISG  314 (356)
Q Consensus       235 I~AtGg~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~~~~~~~~~~g~~~~~~~~g~~l~sG  314 (356)
                      |-+||+.|++|+.+++++.+++....+++++++++++.++.++.+++|++||+++.||++.+++|.+||||+||.|++||
T Consensus       227 vS~tGHDGPFGAfcvKRl~si~~~~~l~gMk~LDMN~AEd~iV~~trevvpgMiv~GMEvaE~DGanRMGPTFGaMm~SG  306 (328)
T KOG2960|consen  227 VSTTGHDGPFGAFCVKRLVSIDQNQKLGGMKGLDMNHAEDDIVIHTREVVPGMIVAGMEVAELDGANRMGPTFGAMMLSG  306 (328)
T ss_pred             EEccCCCCCchhHHHHHHhhhhhhhhcCCCccccccchhhhhhhhhhhccCceEEeeeeeeeccCCcccCcchhhhhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCCCCccc
Q 018414          315 QKAAHLALKSLGQPNALDGTYV  336 (356)
Q Consensus       315 ~~~~~l~l~~~~~~~~~~~~~~  336 (356)
                      .++++.+|+.+.-|++.|++++
T Consensus       307 ~kAaq~aLk~f~~~~aid~~~v  328 (328)
T KOG2960|consen  307 VKAAQQALKHFAAPNAIDGTLV  328 (328)
T ss_pred             hhHHHHHHHHhcCccccccccC
Confidence            9999999999999999998763

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.1e-43  Score=305.84  Aligned_cols=259  Identities=43%  Similarity=0.761  Sum_probs=236.4

Q ss_pred             CCccCCCccchhhHHHHHHHhhhcccCCcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhh
Q 018414           62 TFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMV  141 (356)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~  141 (356)
                      .+++.++.|.++++.|+++|+.+.....+.||+|||+||+||+||++|+++ |+||+|+||+-.+||+.|.+|+++++++
T Consensus         2 ~~~f~~~~E~~itraI~~~~~~~l~~~~esDViIVGaGPsGLtAAyyLAk~-g~kV~i~E~~ls~GGG~w~GGmlf~~iV   80 (262)
T COG1635           2 SFKFAPLREVKITRAITERYFEDLLDYLESDVIIVGAGPSGLTAAYYLAKA-GLKVAIFERKLSFGGGIWGGGMLFNKIV   80 (262)
T ss_pred             CccccchhhHHHHHHHHHHHHHHHHhhhhccEEEECcCcchHHHHHHHHhC-CceEEEEEeecccCCcccccccccceee
Confidence            467888999999999999999987777789999999999999999999999 9999999999999999999999999999


Q ss_pred             ccchHHHHHHHhCCCccccCCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCC-eEEEEEEcceeeecccCC
Q 018414          142 VRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG-RVGGVVTNWALVSMNHDT  220 (356)
Q Consensus       142 ~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~-~v~gv~~~~~~~~~~~~~  220 (356)
                      .+.+..+.|+++|++|...+++++..++.++...|..++. +.|++++..+.|++++..++ +|.|+.++|..++..+  
T Consensus        81 v~~~a~~iL~e~gI~ye~~e~g~~v~ds~e~~skl~~~a~-~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~--  157 (262)
T COG1635          81 VREEADEILDEFGIRYEEEEDGYYVADSAEFASKLAARAL-DAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAG--  157 (262)
T ss_pred             ecchHHHHHHHhCCcceecCCceEEecHHHHHHHHHHHHH-hcCceeeecceEEEEEEecCCceEEEEEecchhhhcc--
Confidence            9999999999999999998887778889999999999887 67999999999999999887 8999999998776654  


Q ss_pred             CCCCCCeEEEcCEEEEcCCCCCCCCCccchhhhccCcccccccccccccccccceeeeccccccCceeEeceEEEEecCC
Q 018414          221 QSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGA  300 (356)
Q Consensus       221 ~~~g~~~~i~Ak~VI~AtGg~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~~~~~~~~~~g~  300 (356)
                       .|.|+.+++|++||.|||+.+...+...++....+  ..++++.++|.+..++.++..+++++||+++.||+++.+.|.
T Consensus       158 -lhvDPl~i~a~~VvDaTGHda~v~~~~~kr~~~l~--~~~~Ge~~mw~e~~E~lvV~~T~eV~pgL~vaGMa~~av~G~  234 (262)
T COG1635         158 -LHVDPLTIRAKAVVDATGHDAEVVSFLAKRIPELG--IEVPGEKSMWAERGEDLVVENTGEVYPGLYVAGMAVNAVHGL  234 (262)
T ss_pred             -cccCcceeeEEEEEeCCCCchHHHHHHHHhccccc--cccCCCcchhhhHHHHHHHhccccccCCeEeehhhHHhhcCC
Confidence             46678999999999999999876655555554433  378999999999999999999999999999999999999999


Q ss_pred             cccCCccceeeeehHHHHHHHHHHhCC
Q 018414          301 PRMGPTFGAMMISGQKAAHLALKSLGQ  327 (356)
Q Consensus       301 ~~~~~~~g~~l~sG~~~~~l~l~~~~~  327 (356)
                      +||||+||+|++||++++++++++|+.
T Consensus       235 pRMGPiFGgMllSGkkaAe~i~e~L~~  261 (262)
T COG1635         235 PRMGPIFGGMLLSGKKAAEEILEKLKL  261 (262)
T ss_pred             cccCchhhhhhhchHHHHHHHHHHhhc
Confidence            999999999999999999999999864

>TIGR00292 thiazole biosynthesis enzyme

Probab=100.00  E-value=2.5e-38  Score=289.55  Aligned_cols=251  Identities=42%  Similarity=0.728  Sum_probs=213.0

Q ss_pred             chhhHHHHHHHhhhcccCCcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHH
Q 018414           71 SIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFL  150 (356)
Q Consensus        71 ~~~~~~~~~~~~~~m~~~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l  150 (356)
                      ..+++.|+++|+.++....+|||+|||||++|+++|+.|+++ |++|+||||+..+|++.|.++..+..........+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~DVvIVGgGpAGL~aA~~la~~-G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l   80 (254)
T TIGR00292         2 SKISRAIVERYFEDLLDYAESDVIIVGAGPSGLTAAYYLAKN-GLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEIL   80 (254)
T ss_pred             chhHHHHHHHHHHHHHHhcCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCCCccccCCCcceecccccchHHHHH
Confidence            457899999999998888899999999999999999999999 9999999999999999998888777776677778899


Q ss_pred             HHhCCCccccCCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCC--eEEEEEEcceeeecccCCCCCCCCeE
Q 018414          151 DELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNV  228 (356)
Q Consensus       151 ~~~G~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~--~v~gv~~~~~~~~~~~~~~~~g~~~~  228 (356)
                      +++|++|......+...+...+.+.|++++. +.|+++++++.++++..+++  ++.|+.++|..+..++.   +.+..+
T Consensus        81 ~~~gi~~~~~~~g~~~~~~~el~~~L~~~a~-e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~---~~d~~~  156 (254)
T TIGR00292        81 DEFGIRYEDEGDGYVVADSAEFISTLASKAL-QAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGL---HVDPLT  156 (254)
T ss_pred             HHCCCCeeeccCceEEeeHHHHHHHHHHHHH-HcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCC---CCCCEE
Confidence            9999998776543444566788899998887 57999999999999998877  69999988754333221   224678


Q ss_pred             EEcCEEEEcCCCCCCCCCccchhhhccCcccccccccccccccccceeeeccccccCceeEeceEEEEecCCcccCCccc
Q 018414          229 MEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFG  308 (356)
Q Consensus       229 i~Ak~VI~AtGg~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~~~~~~~~~~g~~~~~~~~g  308 (356)
                      ++|+.||+|||+.+.+.+...+.+......+.++++.++|.+..|+.++..++|++||+|+.||+++..+|.+||||.||
T Consensus       157 i~Ak~VVdATG~~a~v~~~l~~~~~~~~~~~~~~g~~~~~~~~~e~~~~~~t~~~~~g~~~~gm~~~~~~~~~rmgp~fg  236 (254)
T TIGR00292       157 QRSRVVVDATGHDAEIVAVCAKKIVLEDQVPKLGGEKSMWAEVAEVAIHENTREVVPNLYVAGMAVAAVHGLPRMGPIFG  236 (254)
T ss_pred             EEcCEEEEeecCCchHHHHHHHHcCcccCCcccCCchhhhhhhhHHHHHhccCcccCCEEEechhhhhhcCCCCcCchHH
Confidence            99999999999998766554444432222446789999999999999999999999999999999999999999999999


Q ss_pred             eeeeehHHHHHHHHHHhC
Q 018414          309 AMMISGQKAAHLALKSLG  326 (356)
Q Consensus       309 ~~l~sG~~~~~l~l~~~~  326 (356)
                      .|++||.+++++++++|+
T Consensus       237 ~m~~sg~~~a~~~~~~~~  254 (254)
T TIGR00292       237 GMLLSGKHVAEQILEKLK  254 (254)
T ss_pred             HHHHhhHHHHHHHHHHhC
Confidence            999999999999999874

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=100.00  E-value=5e-37  Score=281.71  Aligned_cols=254  Identities=37%  Similarity=0.663  Sum_probs=211.2

Q ss_pred             CCccchhhHHHHHHHhhhcccCCcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchH
Q 018414           67 PIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA  146 (356)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~m~~~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~  146 (356)
                      ++.|..+++.|.++|+.++....++||+|||||++|++||+.|++. |++|+|+||...+|++.|.++.++.........
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~DVvIVGgGpAGl~AA~~la~~-G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~   80 (257)
T PRK04176          2 ELDEVKITRAIVEEYFEKLLDYLEVDVAIVGAGPSGLTAAYYLAKA-GLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEA   80 (257)
T ss_pred             CchHHHHHHHHHHHHHHHHHHhccCCEEEECccHHHHHHHHHHHhC-CCeEEEEecCCCCCCccccCccccccccchHHH
Confidence            3567889999999999988888889999999999999999999999 999999999999998888887777666666677


Q ss_pred             HHHHHHhCCCccccCCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCC-eEEEEEEcceeeecccCCCCCCC
Q 018414          147 HIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG-RVGGVVTNWALVSMNHDTQSCMD  225 (356)
Q Consensus       147 ~~~l~~~G~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~-~v~gv~~~~~~~~~~~~~~~~g~  225 (356)
                      .++++++|++|.....-.+..+...+...|.+++. +.|++++++++|+++..+++ ++.|+.++|..+..+.   .+.+
T Consensus        81 ~~~l~~~gv~~~~~~~g~~~vd~~~l~~~L~~~A~-~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g---~~~~  156 (257)
T PRK04176         81 DEILDEFGIRYKEVEDGLYVADSVEAAAKLAAAAI-DAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAG---LHVD  156 (257)
T ss_pred             HHHHHHCCCCceeecCcceeccHHHHHHHHHHHHH-HcCCEEEcCceeceeeEeCCCcEEEEEEccccccccC---CCCC
Confidence            88999999998764322223456788888888886 67999999999999988765 8999988763222111   1224


Q ss_pred             CeEEEcCEEEEcCCCCCCCCCccchhhhccCcccccccccccccccccceeeeccccccCceeEeceEEEEecCCcccCC
Q 018414          226 PNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGP  305 (356)
Q Consensus       226 ~~~i~Ak~VI~AtGg~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~~~~~~~~~~g~~~~~~  305 (356)
                      ..+++||.||+|||+.+...+...+....  ....++++.++|.+..++.++..+++++||+|+.||+++..+|.+||||
T Consensus       157 ~~~i~Ak~VI~ATG~~a~v~~~l~~~~~~--~~~~~~g~~~~~~~~~e~~v~~~t~~~~~g~~~~gm~~~~~~~~~rmg~  234 (257)
T PRK04176        157 PLTIEAKAVVDATGHDAEVVSVLARKGPE--LGIEVPGEKSMWAERGEKLVVENTGEVYPGLYVAGMAANAVHGLPRMGP  234 (257)
T ss_pred             cEEEEcCEEEEEeCCCcHHHHHHHHHcCC--cccccCCccccccCchHHHHHhcCCeEcCCEEEeehhhhhhcCCCccCc
Confidence            57899999999999988765443333332  2346789999999999999999999999999999999999999999999


Q ss_pred             ccceeeeehHHHHHHHHHHhCC
Q 018414          306 TFGAMMISGQKAAHLALKSLGQ  327 (356)
Q Consensus       306 ~~g~~l~sG~~~~~l~l~~~~~  327 (356)
                      .||.|++||.+++++++++|+.
T Consensus       235 ~fg~m~~sg~~~a~~~~~~~~~  256 (257)
T PRK04176        235 IFGGMLLSGKKVAELILEKLKK  256 (257)
T ss_pred             hhHhHHHhHHHHHHHHHHHhhc
Confidence            9999999999999999999975

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=100.00  E-value=1.1e-36  Score=264.36  Aligned_cols=229  Identities=44%  Similarity=0.742  Sum_probs=183.3

Q ss_pred             hHHHHHHHhhhcccCCcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHh
Q 018414           74 SREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDEL  153 (356)
Q Consensus        74 ~~~~~~~~~~~m~~~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~  153 (356)
                      +|.|.++|+.++.+..++||+|||+||+||+||+.|+++ |+||+++|+...+||+.|.+|.++++++.+.+....|+++
T Consensus         1 sraI~~~~~~~l~~~~~~DV~IVGaGpaGl~aA~~La~~-g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~el   79 (230)
T PF01946_consen    1 SRAIIERYFEDLYDYLEYDVAIVGAGPAGLTAAYYLAKA-GLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDEL   79 (230)
T ss_dssp             HHHHHHHHHHHHHHHTEESEEEE--SHHHHHHHHHHHHH-TS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHH
T ss_pred             ChHHHHHHHHHHHhhccCCEEEECCChhHHHHHHHHHHC-CCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhC
Confidence            367889999988888899999999999999999999999 9999999999999999999999999999999999999999


Q ss_pred             CCCccccCCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeC-CeEEEEEEcceeeecccCCCCCCCCeEEEcC
Q 018414          154 GIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAK  232 (356)
Q Consensus       154 G~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak  232 (356)
                      |++|...+++.+..++.++...|..++. +.|++++..+.|+++...+ ++|.|+.++|..+.+..   .+.|+.+++||
T Consensus        80 gi~y~~~~~g~~v~d~~~~~s~L~s~a~-~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~g---lHvDPl~i~ak  155 (230)
T PF01946_consen   80 GIPYEEYGDGYYVADSVEFTSTLASKAI-DAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAG---LHVDPLTIRAK  155 (230)
T ss_dssp             T---EE-SSEEEES-HHHHHHHHHHHHH-TTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT-----T-B-EEEEES
T ss_pred             CceeEEeCCeEEEEcHHHHHHHHHHHHh-cCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhh---cCCCcceEEEe
Confidence            9999988888888899999999999988 5899999999999999887 89999999998776652   23467899999


Q ss_pred             EEEEcCCCCCCCCCccchhhhccCcccccccccccccccccceeeeccccccCceeEeceEEEEecCCcccCCcc
Q 018414          233 VVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTF  307 (356)
Q Consensus       233 ~VI~AtGg~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~~~~~~~~~~g~~~~~~~~  307 (356)
                      .||.|||+.+.+.+...++.........++++.++|.+..|+.++..++|++||+++.||+++..+|.+||||.|
T Consensus       156 ~ViDaTGHda~v~~~~~kk~~~~~~~~~v~Ge~~m~~~~~E~~vV~~T~eV~PGL~v~GMa~~av~G~~RMGPiF  230 (230)
T PF01946_consen  156 VVIDATGHDAEVVRVLAKKLKLLTPTGKVPGEKSMWAERGEDLVVENTREVYPGLYVAGMAANAVDGGPRMGPIF  230 (230)
T ss_dssp             EEEE---SSSSSTSHHHHHHHHTTSSS-----EEB-HHHHHHHHHHCEEEEETTEEE-THHHHHHHT-EB-SSB-
T ss_pred             EEEeCCCCchHHHHHHHHHhhhcccccccCCCCCcCcchhHHHHHHhhccccCCEEEechhhHhhcCCCCCCCCC
Confidence            999999999999988888877666566789999999999999999999999999999999999999999999987

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.88  E-value=4.3e-22  Score=193.66  Aligned_cols=211  Identities=21%  Similarity=0.357  Sum_probs=135.4

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCC-------cccc-CC----------------ccchhhhc---c
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG-------GAWL-GG----------------QLFSAMVV---R  143 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg-------~~~~-~g----------------~~~~~~~~---~  143 (356)
                      |||+|||||+||++||+.|++. |.+|+|+||+..+|.       +.++ ..                ......+.   .
T Consensus         1 ydviIIGgGaAGl~aA~~aa~~-g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~   79 (409)
T PF03486_consen    1 YDVIIIGGGAAGLMAAITAAEK-GARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSP   79 (409)
T ss_dssp             -SEEEE--SHHHHHHHHHHHHT-T--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-H
T ss_pred             CcEEEECCCHHHHHHHHHHHhC-CCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCH
Confidence            7999999999999999999999 999999999988752       1111 00                00111111   1


Q ss_pred             chHHHHHHHhCCCccccC-C--eEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCC
Q 018414          144 KPAHIFLDELGIDYDEQD-N--YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDT  220 (356)
Q Consensus       144 ~~~~~~l~~~G~~~~~~~-~--~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~  220 (356)
                      ...+.|+.++|+++...+ .  ||....+..+.+.|++.+. +.||+++++++|.++..+++.+..|.+.          
T Consensus        80 ~d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~-~~gv~i~~~~~V~~i~~~~~~~f~v~~~----------  148 (409)
T PF03486_consen   80 EDLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELK-RLGVEIHFNTRVKSIEKKEDGVFGVKTK----------  148 (409)
T ss_dssp             HHHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHH-HHT-EEE-S--EEEEEEETTEEEEEEET----------
T ss_pred             HHHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHH-HcCCEEEeCCEeeeeeecCCceeEeecc----------
Confidence            135689999999886543 2  4445567888899988886 6799999999999999999988888873          


Q ss_pred             CCCCCCeEEEcCEEEEcCCCCCC--CCC--ccchhhhccCc--cccccccccccccccccee--eeccccccCceeEece
Q 018414          221 QSCMDPNVMEAKVVVSSCGHDGP--FGA--TGVKRLKSIGM--IEEVPGMKALDMNSAEDAI--VRLTREVVPGMIVTGM  292 (356)
Q Consensus       221 ~~~g~~~~i~Ak~VI~AtGg~~~--~~~--~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~--~~~~~e~~~g~~~~~~  292 (356)
                          +...++||.||+|+||.+.  .|.  +++++++.+||  .+++|.++++.++  ++++  ..+     .|+.+.+.
T Consensus       149 ----~~~~~~a~~vILAtGG~S~p~~GS~G~gy~~a~~lGh~i~~~~PaL~~l~~~--~~~~~~~~l-----~Gv~~~~~  217 (409)
T PF03486_consen  149 ----NGGEYEADAVILATGGKSYPKTGSDGSGYRIAKKLGHTITPPYPALVPLKCD--EPWLFFKEL-----SGVRLKAV  217 (409)
T ss_dssp             ----TTEEEEESEEEE----SSSGGGT-SSHHHHHHHHTT--EEEEEEES--EE----HHHHHTGGG-----TT-EEEEE
T ss_pred             ----CcccccCCEEEEecCCCCccccCCCcHHHHHHHHCCCcEecCCCccCCeeec--chhhhhhhh-----CCCceeeE
Confidence                1478999999999998662  232  78999999999  8899999995554  4444  455     89998876


Q ss_pred             EEEEecCCcccCCccceee-----eehHHHHHH---HHHHhC
Q 018414          293 EVAEIDGAPRMGPTFGAMM-----ISGQKAAHL---ALKSLG  326 (356)
Q Consensus       293 ~~~~~~g~~~~~~~~g~~l-----~sG~~~~~l---~l~~~~  326 (356)
                      ...+ ++ ......+|+++     +|||.++++   +.+.+.
T Consensus       218 ~~~~-~~-~~~~~~~GellfT~~GiSGp~il~lS~~~~~~l~  257 (409)
T PF03486_consen  218 ISLL-DG-KKKASETGELLFTHYGISGPAILQLSRFIARALN  257 (409)
T ss_dssp             EEEE--E-CTCEEEEEEEEE-SSEEESHHHHHHTTTHHHHHH
T ss_pred             EEEe-cc-CCccceeeeEEEECCccchHHHHHHHHHHHHHHH
Confidence            5555 33 44556789998     999999998   444444

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.86  E-value=9e-21  Score=178.22  Aligned_cols=205  Identities=17%  Similarity=0.256  Sum_probs=152.3

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCC-------ccccCC--ccchhhh---------------c--c
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG-------GAWLGG--QLFSAMV---------------V--R  143 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg-------~~~~~g--~~~~~~~---------------~--~  143 (356)
                      .+||+|||||+||++||..++++ |.+|+|+|+++.+|.       +.+|--  ..+..++               .  .
T Consensus         3 ~~dviIIGgGpAGlMaA~~aa~~-G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~   81 (408)
T COG2081           3 RFDVIIIGGGPAGLMAAISAAKA-GRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTP   81 (408)
T ss_pred             cceEEEECCCHHHHHHHHHHhhc-CCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCH
Confidence            58999999999999999999999 999999999987752       222210  0111111               1  1


Q ss_pred             chHHHHHHHhCCCccccCC---eEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCC
Q 018414          144 KPAHIFLDELGIDYDEQDN---YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDT  220 (356)
Q Consensus       144 ~~~~~~l~~~G~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~  220 (356)
                      ...+.|++.+|+++.....   |+..+.+..+.+.|+.++. +.||+++++++|.++..++. ...+.+.+         
T Consensus        82 ~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~-~~gV~i~~~~~v~~v~~~~~-~f~l~t~~---------  150 (408)
T COG2081          82 EDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELE-ALGVTIRTRSRVSSVEKDDS-GFRLDTSS---------  150 (408)
T ss_pred             HHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHH-HcCcEEEecceEEeEEecCc-eEEEEcCC---------
Confidence            2457899999999877643   4555778999999999997 78999999999999998773 33344432         


Q ss_pred             CCCCCCeEEEcCEEEEcCCCCC--CCCC--ccchhhhccCc--ccccccccccccccccceeeeccccccCceeEeceEE
Q 018414          221 QSCMDPNVMEAKVVVSSCGHDG--PFGA--TGVKRLKSIGM--IEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEV  294 (356)
Q Consensus       221 ~~~g~~~~i~Ak~VI~AtGg~~--~~~~--~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~~~~~~  294 (356)
                           ..+++|+.+|+|+||.+  .+|.  .|++++..+||  .++.|+++++.++  +..+-.     ..|+.+....+
T Consensus       151 -----g~~i~~d~lilAtGG~S~P~lGstg~gy~iA~~~G~~I~~~rpalvpft~~--~~~~~~-----l~gls~~~v~~  218 (408)
T COG2081         151 -----GETVKCDSLILATGGKSWPKLGSTGFGYPIARQFGHTITPLRPALVPFTLD--ESFLER-----LAGLSLKSVPL  218 (408)
T ss_pred             -----CCEEEccEEEEecCCcCCCCCCCCchhhHHHHHcCCccccCccccCCccCC--HHHHHH-----hcCCcccceEE
Confidence                 34899999999999766  3444  68999999999  8889999996665  322222     38888888887


Q ss_pred             EEecCCcccCCccceee-----eehHHHHHH
Q 018414          295 AEIDGAPRMGPTFGAMM-----ISGQKAAHL  320 (356)
Q Consensus       295 ~~~~g~~~~~~~~g~~l-----~sG~~~~~l  320 (356)
                      .+..+..  ...-|+|+     +|||+++++
T Consensus       219 ~v~~~~g--~~~~g~~LfTh~GiSGPavl~~  247 (408)
T COG2081         219 SVTAGKG--ITFQGDLLFTHRGLSGPAVLQL  247 (408)
T ss_pred             EEecCCC--ceeecceEEEecCCcHHHHHHH
Confidence            7765531  12226777     999999987

>TIGR00275 flavoprotein, HI0933 family

Probab=99.65  E-value=3.2e-15  Score=146.13  Aligned_cols=202  Identities=20%  Similarity=0.370  Sum_probs=136.9

Q ss_pred             EEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCC---c------cchh---hh-----------c---cchHH
Q 018414           94 VVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGG---Q------LFSA---MV-----------V---RKPAH  147 (356)
Q Consensus        94 vIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g---~------~~~~---~~-----------~---~~~~~  147 (356)
                      +|||||++|++||+.|+++ |++|+|+||+..+|+.....|   +      ....   ..           .   .....
T Consensus         1 vIIGgG~aGl~aAi~aa~~-G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~   79 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAARE-GLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLI   79 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhc-CCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHH
Confidence            6999999999999999999 999999999987765421111   0      0000   00           0   11235


Q ss_pred             HHHHHhCCCccccCC---eEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCC
Q 018414          148 IFLDELGIDYDEQDN---YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCM  224 (356)
Q Consensus       148 ~~l~~~G~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g  224 (356)
                      +|+.++|+++.....   |+.......+.+.|.+.+. +.|+++++++.|+++..+++. ..+.+.              
T Consensus        80 ~~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~-~~gv~i~~~~~V~~i~~~~~~-~~v~~~--------------  143 (400)
T TIGR00275        80 DFFESLGLELKVEEDGRVFPCSDSAADVLDALLNELK-ELGVEILTNSKVKSIKKDDNG-FGVETS--------------  143 (400)
T ss_pred             HHHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHH-HCCCEEEeCCEEEEEEecCCe-EEEEEC--------------
Confidence            678888887765432   2333456778888888776 679999999999999776553 334432              


Q ss_pred             CCeEEEcCEEEEcCCCCCC--CCC--ccchhhhccCc--ccccccccccccccccceeeeccccccCceeEeceEEEEec
Q 018414          225 DPNVMEAKVVVSSCGHDGP--FGA--TGVKRLKSIGM--IEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEID  298 (356)
Q Consensus       225 ~~~~i~Ak~VI~AtGg~~~--~~~--~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~~~~~~~~~~  298 (356)
                       ..++.+|.||+|+|+.+.  .+.  .+++.+...|+  .++.|.++++...  +++...+     .|+.+.+... +..
T Consensus       144 -~~~i~ad~VIlAtG~~s~p~~gs~G~g~~la~~lG~~i~~~~P~l~~l~~~--~~~~~~l-----~Gv~~~~~~~-~~~  214 (400)
T TIGR00275       144 -GGEYEADKVILATGGLSYPQLGSTGDGYEIAESLGHTIVPPVPALVPLTLD--ESFLKEL-----SGISLDGVVL-SLV  214 (400)
T ss_pred             -CcEEEcCEEEECCCCcccCCCCCCcHHHHHHHHCCCCEecccceEeEEEeC--CcccccC-----CCCcCccEEE-Eec
Confidence             246899999999998652  222  67888888888  5678888885544  3333334     6777655422 222


Q ss_pred             CCcccCCccceee-----eehHHHHHHH
Q 018414          299 GAPRMGPTFGAMM-----ISGQKAAHLA  321 (356)
Q Consensus       299 g~~~~~~~~g~~l-----~sG~~~~~l~  321 (356)
                      ..++....+|+++     +|||.++++-
T Consensus       215 ~~~~~~~~~g~llft~~gisG~~vl~~s  242 (400)
T TIGR00275       215 NGKKVLEEFGDLLFTHFGLSGPAILDLS  242 (400)
T ss_pred             CCcEEEeecccEEEECCCcCHHHHHHHH
Confidence            2244445678888     8999999973

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=99.62  E-value=1.8e-14  Score=148.13  Aligned_cols=146  Identities=23%  Similarity=0.275  Sum_probs=103.4

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc-ccCCccc---------------h--------------
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA-WLGGQLF---------------S--------------  138 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~-~~~g~~~---------------~--------------  138 (356)
                      .++||||||+|.||++||+.+++. |.+|+||||....++++ +.+|.+.               .              
T Consensus        49 ~~~DVlVIG~G~AGl~AAl~Aae~-G~~VilveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~Dt~~~g~~~~d~~l  127 (635)
T PLN00128         49 HTYDAVVVGAGGAGLRAAIGLSEH-GFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDA  127 (635)
T ss_pred             eecCEEEECccHHHHHHHHHHHhc-CCcEEEEEcCCCCCCchHHhhcCceeecCCCCCCCHHHHHHHHHHhhCCCCCHHH
Confidence            358999999999999999999999 99999999987655433 1111110               0              


Q ss_pred             -hhhc-c-chHHHHHHHhCCCccccCC--eE------------------EEe-----chHHHHHHHHHHHHcCCCcEEEc
Q 018414          139 -AMVV-R-KPAHIFLDELGIDYDEQDN--YV------------------VIK-----HAALFTSTIMSKLLARPNVKLFN  190 (356)
Q Consensus       139 -~~~~-~-~~~~~~l~~~G~~~~~~~~--~~------------------~~~-----~~~~~~~~l~~~~~~~~gv~i~~  190 (356)
                       ..+. + ...++||+++|++|+...+  +.                  ...     ....+...|++.+. +.|++++.
T Consensus       128 v~~l~~~s~~~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~~~~~g~~~r~~~~~d~tG~~i~~~L~~~a~-~~gv~i~~  206 (635)
T PLN00128        128 IQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAM-KHNTQFFV  206 (635)
T ss_pred             HHHHHHhHHHHHHHHHhCCCccccCCCCceeeccccccccccCCCcceeeeeccCCCCHHHHHHHHHHHHH-hCCCEEEE
Confidence             0011 1 1356899999999975321  10                  000     13457788888776 56999999


Q ss_pred             CeEEEEEEEe-CCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCCC
Q 018414          191 AVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFG  245 (356)
Q Consensus       191 ~~~v~~i~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~~  245 (356)
                      ++.+++|+.+ +++|.|+...+      ..   +++...+.||.||+||||++...
T Consensus       207 ~~~~~~Li~~~~g~v~Gv~~~~------~~---~g~~~~i~AkaVILATGG~g~~~  253 (635)
T PLN00128        207 EYFALDLIMDSDGACQGVIALN------ME---DGTLHRFRAHSTILATGGYGRAY  253 (635)
T ss_pred             eeEEEEEEEcCCCEEEEEEEEE------cC---CCeEEEEEcCeEEECCCCCcccc
Confidence            9999999887 68999987632      11   12356899999999999998543

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.60  E-value=1.6e-14  Score=147.09  Aligned_cols=145  Identities=23%  Similarity=0.362  Sum_probs=102.9

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc-ccCCccc-----------------hhhh---------
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA-WLGGQLF-----------------SAMV---------  141 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~-~~~g~~~-----------------~~~~---------  141 (356)
                      .++||||||+|.||++||+.+++. |.+|+||||....++++ +.+|.+.                 ...+         
T Consensus         4 ~~~DVvVVG~G~AGl~AAl~Aae~-G~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~~~~~Ds~e~~~~d~~~~g~~~~d~   82 (566)
T PRK06452          4 IEYDAVVIGGGLAGLMSAHEIASA-GFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTVKGGDYLVDQ   82 (566)
T ss_pred             ccCcEEEECccHHHHHHHHHHHHC-CCcEEEEEccCCCCCcchhhccchhhhccccCCCcccHHHHHHHHHHhhccCCCH
Confidence            358999999999999999999999 99999999986554432 2222111                 0000         


Q ss_pred             ------c-c-chHHHHHHHhCCCccccCC------------eEEEe-----chHHHHHHHHHHHHcCCCcEEEcCeEEEE
Q 018414          142 ------V-R-KPAHIFLDELGIDYDEQDN------------YVVIK-----HAALFTSTIMSKLLARPNVKLFNAVAAED  196 (356)
Q Consensus       142 ------~-~-~~~~~~l~~~G~~~~~~~~------------~~~~~-----~~~~~~~~l~~~~~~~~gv~i~~~~~v~~  196 (356)
                            . + ...++||+++|++|+...+            ++...     ....+...|++.+. +.||++++++.+++
T Consensus        83 ~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~-~~gv~i~~~~~~~~  161 (566)
T PRK06452         83 DAAELLSNKSGEIVMLLERWGALFNRQPDGRVAVRYFGGQTYPRTRFVGDKTGMALLHTLFERTS-GLNVDFYNEWFSLD  161 (566)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCccccCCCCcEeccCCcCccCCeeEecCCCCHHHHHHHHHHHHH-hCCCEEEeCcEEEE
Confidence                  0 0 1346899999999965321            11111     13456778887776 46999999999999


Q ss_pred             EEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414          197 LIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF  244 (356)
Q Consensus       197 i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~  244 (356)
                      |+.++++|.|+.+.+      .++   ++...++||.||+||||++.+
T Consensus       162 Li~~~g~v~Gv~~~~------~~~---g~~~~i~AkaVVLATGG~~~l  200 (566)
T PRK06452        162 LVTDNKKVVGIVAMQ------MKT---LTPFFFKTKAVVLATGGMGML  200 (566)
T ss_pred             EEEECCEEEEEEEEE------CCC---CeEEEEEeCeEEECCCccccc
Confidence            999999999998742      111   134678999999999998843

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=99.60  E-value=1.7e-14  Score=148.02  Aligned_cols=146  Identities=23%  Similarity=0.257  Sum_probs=103.8

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc-ccCCccc---------------hh-------------
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA-WLGGQLF---------------SA-------------  139 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~-~~~g~~~---------------~~-------------  139 (356)
                      .++||||||+|.||++||+.+++. |.+|+||||....++++ +.+|.+.               ..             
T Consensus        28 ~~~DVlVIG~G~AGl~AAi~Aa~~-G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~l  106 (617)
T PTZ00139         28 HTYDAVVVGAGGAGLRAALGLVEL-GYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDWLGDQDA  106 (617)
T ss_pred             cccCEEEECccHHHHHHHHHHHHc-CCcEEEEeccCCCCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhCCCCCHHH
Confidence            468999999999999999999999 99999999987655443 2212110               00             


Q ss_pred             --hhcc--chHHHHHHHhCCCccccCC--eE------------------EEe-----chHHHHHHHHHHHHcCCCcEEEc
Q 018414          140 --MVVR--KPAHIFLDELGIDYDEQDN--YV------------------VIK-----HAALFTSTIMSKLLARPNVKLFN  190 (356)
Q Consensus       140 --~~~~--~~~~~~l~~~G~~~~~~~~--~~------------------~~~-----~~~~~~~~l~~~~~~~~gv~i~~  190 (356)
                        .+.+  ...++||+++|++|+...+  +.                  ...     ....+...|++.+. +.|+++++
T Consensus       107 v~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~-~~gv~i~~  185 (617)
T PTZ00139        107 IQYMCREAPQAVLELESYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSL-KYDCNFFI  185 (617)
T ss_pred             HHHHHHHHHHHHHHHHhcCCceEeCCCCcEeecccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHH-hCCCEEEe
Confidence              0011  1356899999999965421  11                  000     13467788888776 57999999


Q ss_pred             CeEEEEEEE-eCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCCC
Q 018414          191 AVAAEDLIV-KGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFG  245 (356)
Q Consensus       191 ~~~v~~i~~-~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~~  245 (356)
                      ++.+++|+. ++++|.|+...+      ..   +++...+.||.||+||||++...
T Consensus       186 ~~~~~~Li~~~~g~v~Gv~~~~------~~---~g~~~~i~AkaVVLATGG~~~~~  232 (617)
T PTZ00139        186 EYFALDLIMDEDGECRGVIAMS------ME---DGSIHRFRAHYTVIATGGYGRAY  232 (617)
T ss_pred             ceEEEEEEECCCCEEEEEEEEE------CC---CCeEEEEECCcEEEeCCCCcccc
Confidence            999999998 678999987631      11   12356899999999999988543

>PRK06175 L-aspartate oxidase; Provisional

Probab=99.59  E-value=2.3e-14  Score=141.48  Aligned_cols=141  Identities=19%  Similarity=0.303  Sum_probs=100.4

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccc-cCCccc------------hh----------------h
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW-LGGQLF------------SA----------------M  140 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~-~~g~~~------------~~----------------~  140 (356)
                      ++||||||+|.||++||+.++ . |.+|+||||....++++. .+|.+.            ..                +
T Consensus         4 ~~DVvVVG~G~AGl~AA~~a~-~-G~~V~lleK~~~~gg~s~~a~ggi~~~~~~d~~~~~~~d~~~~g~~~~d~~lv~~~   81 (433)
T PRK06175          4 YADVLIVGSGVAGLYSALNLR-K-DLKILMVSKGKLNECNTYLAQGGISVARNKDDITSFVEDTLKAGQYENNLEAVKIL   81 (433)
T ss_pred             cccEEEECchHHHHHHHHHhc-c-CCCEEEEecCCCCCCchHHHhHhheeCCCCCCHHHHHHHHHHHhCCCCCHHHHHHH
Confidence            589999999999999999984 6 999999999987665532 121110            00                0


Q ss_pred             hcc-chHHHHHHHhCCCccccCC---eE--------EE-----echHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCe
Q 018414          141 VVR-KPAHIFLDELGIDYDEQDN---YV--------VI-----KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGR  203 (356)
Q Consensus       141 ~~~-~~~~~~l~~~G~~~~~~~~---~~--------~~-----~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~  203 (356)
                      +.+ ...++||.++|++|+....   |.        ..     .....+.+.|++.+.++.|+++++++.+++|+.++++
T Consensus        82 ~~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~g~~~~~r~~~~~~~~g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~~  161 (433)
T PRK06175         82 ANESIENINKLIDMGLNFDKDEKELSYTKEGAHSVNRIVHFKDNTGKKVEKILLKKVKKRKNITIIENCYLVDIIENDNT  161 (433)
T ss_pred             HHHHHHHHHHHHHcCCccccCCCceeeeccCccccCeEEecCCCChHHHHHHHHHHHHhcCCCEEEECcEeeeeEecCCE
Confidence            111 1356899999999865421   10        00     0234677888888775679999999999999988888


Q ss_pred             EEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          204 VGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       204 v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      |.|+....           +++...++||.||+|||+++.
T Consensus       162 v~Gv~~~~-----------~g~~~~i~Ak~VILAtGG~~~  190 (433)
T PRK06175        162 CIGAICLK-----------DNKQINIYSKVTILATGGIGG  190 (433)
T ss_pred             EEEEEEEE-----------CCcEEEEEcCeEEEccCcccc
Confidence            98876531           112357999999999999774

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.59  E-value=3e-14  Score=145.64  Aligned_cols=144  Identities=20%  Similarity=0.313  Sum_probs=102.4

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc-ccCCccc---------------h---------------
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA-WLGGQLF---------------S---------------  138 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~-~~~g~~~---------------~---------------  138 (356)
                      ++||||||+|.|||+||+.+++. |.+|+||||....++++ +.+|.+.               .               
T Consensus         7 ~~DVlVVG~G~AGl~AAi~Aa~~-G~~V~lleK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~v   85 (588)
T PRK08958          7 EFDAVVIGAGGAGMRAALQISQS-GQSCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAI   85 (588)
T ss_pred             ccCEEEECccHHHHHHHHHHHHc-CCcEEEEEccCCCCCccHHhhhhHhhhcCCCCCCCHHHHHHHHHHHhCCCCCHHHH
Confidence            58999999999999999999999 99999999986554433 2222110               0               


Q ss_pred             hhhc-c-chHHHHHHHhCCCccccCC--eE-----------------EEe-----chHHHHHHHHHHHHcCCCcEEEcCe
Q 018414          139 AMVV-R-KPAHIFLDELGIDYDEQDN--YV-----------------VIK-----HAALFTSTIMSKLLARPNVKLFNAV  192 (356)
Q Consensus       139 ~~~~-~-~~~~~~l~~~G~~~~~~~~--~~-----------------~~~-----~~~~~~~~l~~~~~~~~gv~i~~~~  192 (356)
                      ..+. + ...++||+++|++|+...+  +.                 ...     ....+...|++.+. +.|+++++++
T Consensus        86 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~G~~i~~~L~~~~~-~~gi~i~~~~  164 (588)
T PRK08958         86 EYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNL-KNHTTIFSEW  164 (588)
T ss_pred             HHHHHHHHHHHHHHHHcCCCcccCCCCceeecccccccccccccccceeEecCCCCHHHHHHHHHHHhh-hcCCEEEeCc
Confidence            0001 1 1356899999999965321  11                 000     23567778887776 6799999999


Q ss_pred             EEEEEEEe-CCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414          193 AAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF  244 (356)
Q Consensus       193 ~v~~i~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~  244 (356)
                      .+++|+.+ +++|.|+...+      ..   +++...++||.||+||||++..
T Consensus       165 ~~~~Li~~~~g~v~Gv~~~~------~~---~g~~~~i~AkaVILATGG~~~~  208 (588)
T PRK08958        165 YALDLVKNQDGAVVGCTAIC------IE---TGEVVYFKARATVLATGGAGRI  208 (588)
T ss_pred             EEEEEEECCCCEEEEEEEEE------cC---CCcEEEEEcCeEEECCCCcccc
Confidence            99999985 78999998632      11   1234679999999999998854

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.59  E-value=2.4e-14  Score=146.58  Aligned_cols=145  Identities=24%  Similarity=0.284  Sum_probs=101.7

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc-ccCCccc--------h-------hh------------
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA-WLGGQLF--------S-------AM------------  140 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~-~~~g~~~--------~-------~~------------  140 (356)
                      .++||||||+|.||++||+.+++. |.+|+||||....++++ +..|.+.        +       ..            
T Consensus        11 ~~~DVvVIG~G~AGl~AAl~Aa~~-G~~V~lveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~d~~~~g~~~~d~~l   89 (598)
T PRK09078         11 HKYDVVVVGAGGAGLRATLGMAEA-GLKTACITKVFPTRSHTVAAQGGISASLGNMGEDDWRWHMYDTVKGSDWLGDQDA   89 (598)
T ss_pred             cccCEEEECccHHHHHHHHHHHHc-CCcEEEEEccCCCCcchhhhcCCcccccCCCCCCCHHHHHHHHHHhccCCCCHHH
Confidence            468999999999999999999999 99999999986554432 2211110        0       00            


Q ss_pred             ----hcc-chHHHHHHHhCCCccccCC--eEE------------------Ee-----chHHHHHHHHHHHHcCCCcEEEc
Q 018414          141 ----VVR-KPAHIFLDELGIDYDEQDN--YVV------------------IK-----HAALFTSTIMSKLLARPNVKLFN  190 (356)
Q Consensus       141 ----~~~-~~~~~~l~~~G~~~~~~~~--~~~------------------~~-----~~~~~~~~l~~~~~~~~gv~i~~  190 (356)
                          +.+ ...++||+++|++|+...+  +..                  ..     ....+...|++.+. +.|+++++
T Consensus        90 v~~l~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~d~tG~~i~~~L~~~~~-~~gi~i~~  168 (598)
T PRK09078         90 IEYMCREAPAAVYELEHYGVPFSRTEEGKIYQRPFGGMTTNYGKGPPAQRTCAAADRTGHAILHTLYQQSL-KHNAEFFI  168 (598)
T ss_pred             HHHHHHHHHHHHHHHHHcCCcceecCCCceeecccCceecccCCCCccceeEecCCCCHHHHHHHHHHHHh-hcCCEEEE
Confidence                001 1346899999999865321  100                  00     12457778888776 57999999


Q ss_pred             CeEEEEEEEeC-CeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414          191 AVAAEDLIVKG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF  244 (356)
Q Consensus       191 ~~~v~~i~~~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~  244 (356)
                      ++.+++|+.++ ++|.|+...+      ..   ++....+.|+.||+||||++..
T Consensus       169 ~~~v~~Li~~~~g~v~Gv~~~~------~~---~g~~~~i~AkaVVLATGG~~~~  214 (598)
T PRK09078        169 EYFALDLIMDDGGVCRGVVAWN------LD---DGTLHRFRAHMVVLATGGYGRA  214 (598)
T ss_pred             eEEEEEEEEcCCCEEEEEEEEE------CC---CCcEEEEEcCEEEECCCCCccc
Confidence            99999999875 7899997631      11   1234689999999999998854

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=99.58  E-value=4.9e-14  Score=141.88  Aligned_cols=142  Identities=24%  Similarity=0.389  Sum_probs=100.2

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc-ccCCcc--------------------chhhh-------
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA-WLGGQL--------------------FSAMV-------  141 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~-~~~g~~--------------------~~~~~-------  141 (356)
                      ++||||||+|.+|++||+.+++. |.+|+||||....||++ +..|.+                    +..++       
T Consensus        61 ~~DVvVVG~G~AGl~AAi~Aa~~-Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~  139 (506)
T PRK06481         61 KYDIVIVGAGGAGMSAAIEAKDA-GMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGGTN  139 (506)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHC-CCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCCCC
Confidence            68999999999999999999999 99999999998777643 111111                    00000       


Q ss_pred             --------c--cchHHHHHHHhCCCccccC---C--e----EEE---echHHHHHHHHHHHHcCCCcEEEcCeEEEEEEE
Q 018414          142 --------V--RKPAHIFLDELGIDYDEQD---N--Y----VVI---KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIV  199 (356)
Q Consensus       142 --------~--~~~~~~~l~~~G~~~~~~~---~--~----~~~---~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~  199 (356)
                              .  ....++||+++|++|....   .  +    ...   .....+...|.+.+. +.|+++++++++++|..
T Consensus       140 d~~l~~~~~~~s~~~i~wl~~~Gv~~~~~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~-~~gv~i~~~t~v~~l~~  218 (506)
T PRK06481        140 DKALLRYFVDNSASAIDWLDSMGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQ-ERKIPLFVNADVTKITE  218 (506)
T ss_pred             CHHHHHHHHhccHHHHHHHHHcCceEeecccCCCCCCCceeccCCCCCChHHHHHHHHHHHH-HcCCeEEeCCeeEEEEe
Confidence                    0  1134688999998875321   0  0    000   112456777777775 67999999999999998


Q ss_pred             eCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          200 KGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       200 ~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      ++++|.++.+..       .   +++..+++||.||+|+|+++.
T Consensus       219 ~~g~V~Gv~~~~-------~---~g~~~~i~a~~VVlAtGG~~~  252 (506)
T PRK06481        219 KDGKVTGVKVKI-------N---GKETKTISSKAVVVTTGGFGA  252 (506)
T ss_pred             cCCEEEEEEEEe-------C---CCeEEEEecCeEEEeCCCccc
Confidence            888999887642       1   112357999999999998874

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=99.57  E-value=5.7e-14  Score=143.47  Aligned_cols=146  Identities=23%  Similarity=0.310  Sum_probs=102.6

Q ss_pred             cccEEEECCCHHHHHHHHHhhcC-CCCeEEEEeccCCCCCccc-cCCccc-------------hh---------------
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAW-LGGQLF-------------SA---------------  139 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~-~G~~V~llEk~~~~Gg~~~-~~g~~~-------------~~---------------  139 (356)
                      ++||||||+|.||++||+.+++. +|.+|+||||....++++. .+|.+.             ..               
T Consensus         4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~   83 (582)
T PRK09231          4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFDYHFHDTVAGGDWLCEQDVVE   83 (582)
T ss_pred             eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCChhhccchhhhhcCCCCCHHHHHHHHHHhcccCCCHHHHH
Confidence            58999999999999999999975 2589999999876554432 222110             00               


Q ss_pred             -hhcc-chHHHHHHHhCCCccccCC--eEE----------Ee-----chHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEe
Q 018414          140 -MVVR-KPAHIFLDELGIDYDEQDN--YVV----------IK-----HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK  200 (356)
Q Consensus       140 -~~~~-~~~~~~l~~~G~~~~~~~~--~~~----------~~-----~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~  200 (356)
                       ++.+ ...++||+++|++|+...+  +..          ..     ....+...|++++.+..++++++++.+++|+.+
T Consensus        84 ~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~  163 (582)
T PRK09231         84 YFVHHCPTEMTQLEQWGCPWSRKPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLKYPQIQRFDEHFVLDILVD  163 (582)
T ss_pred             HHHHHHHHHHHHHHHcCCCcccCCCCceeeeccccccCCeeEecCCCcHHHHHHHHHHHhhcCCCcEEEeCeEEEEEEEe
Confidence             0111 1356899999999975321  100          11     234577788887765568999999999999998


Q ss_pred             CCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414          201 GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF  244 (356)
Q Consensus       201 ~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~  244 (356)
                      +++|.|+...+      ..   +++...++||.||+|||+++.+
T Consensus       164 ~g~v~Gv~~~~------~~---~g~~~~i~AkaVIlATGG~~~l  198 (582)
T PRK09231        164 DGHVRGLVAMN------MM---EGTLVQIRANAVVMATGGAGRV  198 (582)
T ss_pred             CCEEEEEEEEE------cC---CCcEEEEECCEEEECCCCCcCC
Confidence            89999987631      11   1234689999999999998854

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.57  E-value=2.9e-14  Score=145.76  Aligned_cols=146  Identities=22%  Similarity=0.316  Sum_probs=102.8

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCC---CeEEEEeccCCCCCccc-cCCccc-----------h---------------
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPN---IQIAIIEQSVSPGGGAW-LGGQLF-----------S---------------  138 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G---~~V~llEk~~~~Gg~~~-~~g~~~-----------~---------------  138 (356)
                      .++||+|||+|.||++||+.+++. |   .+|+||||....++++. .+|.+.           .               
T Consensus         4 ~~~DVlVVG~G~AGl~AA~~Aa~~-G~~~~~V~lleK~~~~~~~s~~a~Gg~~a~~~~~~~ds~e~~~~d~~~~g~~~~d   82 (577)
T PRK06069          4 LKYDVVIVGSGLAGLRAAVAAAER-SGGKLSVAVVSKTQPMRSHSVSAEGGTAAVLYPEKGDSFDLHAYDTVKGSDFLAD   82 (577)
T ss_pred             eecCEEEECccHHHHHHHHHHHHh-CCCCCcEEEEEcccCCCCCceecccccceeeccccCCCHHHHHHHHHHhhcccCC
Confidence            358999999999999999999998 7   89999999876655332 222110           0               


Q ss_pred             ----hhhc-c-chHHHHHHHhCCCccccCC--e----------EEEe-----chHHHHHHHHHHHHcCCCcEEEcCeEEE
Q 018414          139 ----AMVV-R-KPAHIFLDELGIDYDEQDN--Y----------VVIK-----HAALFTSTIMSKLLARPNVKLFNAVAAE  195 (356)
Q Consensus       139 ----~~~~-~-~~~~~~l~~~G~~~~~~~~--~----------~~~~-----~~~~~~~~l~~~~~~~~gv~i~~~~~v~  195 (356)
                          ..+. + ...++||+++|++|+...+  +          +...     ....+.+.|++++.+..|+++++++.++
T Consensus        83 ~~lv~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~d~tG~~i~~~L~~~~~~~~gv~i~~~~~v~  162 (577)
T PRK06069         83 QDAVEVFVREAPEEIRFLDHWGVPWSRRPDGRISQRPFGGMSFPRTTFAADKTGFYIMHTLYSRALRFDNIHFYDEHFVT  162 (577)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCeeEecCCCcEeeeecCCcccceeeEcCCCchHHHHHHHHHHHHhcCCCEEEECCEEE
Confidence                0000 0 1346899999999975422  1          1111     1245777888887655799999999999


Q ss_pred             EEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414          196 DLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF  244 (356)
Q Consensus       196 ~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~  244 (356)
                      +++.++++|.|+...+      ..   +++...+.||.||+|||+++..
T Consensus       163 ~Li~~~g~v~Gv~~~~------~~---~g~~~~i~Ak~VIlATGG~~~~  202 (577)
T PRK06069        163 SLIVENGVFKGVTAID------LK---RGEFKVFQAKAGIIATGGAGRL  202 (577)
T ss_pred             EEEEECCEEEEEEEEE------cC---CCeEEEEECCcEEEcCchhccc
Confidence            9998889999987631      11   1123578999999999998743

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.56  E-value=8.4e-14  Score=143.49  Aligned_cols=145  Identities=20%  Similarity=0.200  Sum_probs=98.7

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCC-c-cccCCccc---------------------------h-
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG-G-AWLGGQLF---------------------------S-  138 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg-~-~~~~g~~~---------------------------~-  138 (356)
                      .++||+|||+|.|||+||+.|++. |.+|+||||...+++ + .+.+|.+.                           + 
T Consensus        34 ~~~DVlVVG~G~AGl~AAi~Aae~-G~~VilieK~~~~~~g~s~~a~GGi~a~~~~~~~~Ds~~~~~~d~~~~g~~~~d~  112 (640)
T PRK07573         34 RKFDVIVVGTGLAGASAAATLGEL-GYNVKVFCYQDSPRRAHSIAAQGGINAAKNYQNDGDSVYRLFYDTVKGGDFRARE  112 (640)
T ss_pred             cccCEEEECccHHHHHHHHHHHHc-CCcEEEEecCCCCCcchhHHhhhchHhHhhccccCCCHHHHHHHHHHhcCCCCCH
Confidence            468999999999999999999999 999999999766542 2 22222110                           0 


Q ss_pred             ----hhhcc-chHHHHHHHhCCCccccCC--eEE----------Ee-----chHHHH----HHHHHHHHcCCCcEEEcCe
Q 018414          139 ----AMVVR-KPAHIFLDELGIDYDEQDN--YVV----------IK-----HAALFT----STIMSKLLARPNVKLFNAV  192 (356)
Q Consensus       139 ----~~~~~-~~~~~~l~~~G~~~~~~~~--~~~----------~~-----~~~~~~----~~l~~~~~~~~gv~i~~~~  192 (356)
                          .++.+ ...++||+++|++|.....  +..          ..     ....+.    +.|.+.+. +.||++++++
T Consensus       113 ~lv~~l~~~s~~~i~wL~~~GV~f~~~~~g~~~~~~~gghs~~R~~~~~~~tG~~i~~~l~~~L~~~~~-~~gV~i~~~t  191 (640)
T PRK07573        113 ANVYRLAEVSVNIIDQCVAQGVPFAREYGGLLANRSFGGAQVSRTFYARGQTGQQLLLGAYQALSRQIA-AGTVKMYTRT  191 (640)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCccccCCCCceeccccCCcccceeEeCCCCCchhHHHHHHHHHHHHHH-hcCCEEEece
Confidence                00111 1456899999999964321  100          00     112233    34444554 6799999999


Q ss_pred             EEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414          193 AAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF  244 (356)
Q Consensus       193 ~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~  244 (356)
                      .+++|+.++++|.||.+.+      ..   ++....+.||.||+||||++..
T Consensus       192 ~v~~Li~d~g~V~GV~~~~------~~---~g~~~~i~AkaVVLATGG~g~~  234 (640)
T PRK07573        192 EMLDLVVVDGRARGIVARN------LV---TGEIERHTADAVVLATGGYGNV  234 (640)
T ss_pred             EEEEEEEeCCEEEEEEEEE------CC---CCcEEEEECCEEEECCCCcccC
Confidence            9999999889999998742      11   1234579999999999998854

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.56  E-value=6.2e-14  Score=143.18  Aligned_cols=145  Identities=23%  Similarity=0.326  Sum_probs=100.9

Q ss_pred             cccEEEECCCHHHHHHHHHhhcC-CCCeEEEEeccCCCCCcc-ccCCccc------------h-----------------
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGA-WLGGQLF------------S-----------------  138 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~-~G~~V~llEk~~~~Gg~~-~~~g~~~------------~-----------------  138 (356)
                      ++||||||+|.||++||+.|++. +|.+|+||||....++++ +.+|.+.            .                 
T Consensus         3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~s~~a~GGi~a~~~~~~~~ds~e~~~~d~~~~~~~l~d~~   82 (575)
T PRK05945          3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSHSVAAQGGIAASLKNVDPEDSWEAHAFDTVKGSDYLADQD   82 (575)
T ss_pred             cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchhhHHhccchhhhccCCCCCCCHHHHHHHHHHHhCCCCCHH
Confidence            58999999999999999999975 158999999987655433 2222110            0                 


Q ss_pred             --hhhc-c-chHHHHHHHhCCCccccCCe--E----------EE-----echHHHHHHHHHHHHcCCCcEEEcCeEEEEE
Q 018414          139 --AMVV-R-KPAHIFLDELGIDYDEQDNY--V----------VI-----KHAALFTSTIMSKLLARPNVKLFNAVAAEDL  197 (356)
Q Consensus       139 --~~~~-~-~~~~~~l~~~G~~~~~~~~~--~----------~~-----~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i  197 (356)
                        ..+. + ...++||+++|++|+...+.  .          ..     .....+...|++.+. +.|+++++++.+++|
T Consensus        83 ~v~~l~~~a~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~-~~gi~i~~~t~v~~L  161 (575)
T PRK05945         83 AVAILTQEAPDVIIDLEHLGVLFSRLPDGRIAQRAFGGHSHNRTCYAADKTGHAILHELVNNLR-RYGVTIYDEWYVMRL  161 (575)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCceEECCCCcEeeccccccccCeeEecCCCChHHHHHHHHHHHh-hCCCEEEeCcEEEEE
Confidence              0000 0 13468899999999764211  1          01     123567788888776 579999999999999


Q ss_pred             EEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414          198 IVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF  244 (356)
Q Consensus       198 ~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~  244 (356)
                      +.++++|.|+...+      ..   +++...+.|+.||+|||+++..
T Consensus       162 ~~~~g~v~Gv~~~~------~~---~g~~~~i~AkaVVlATGG~~~~  199 (575)
T PRK05945        162 ILEDNQAKGVVMYH------IA---DGRLEVVRAKAVMFATGGYGRV  199 (575)
T ss_pred             EEECCEEEEEEEEE------cC---CCeEEEEECCEEEECCCCCcCC
Confidence            98889999987521      11   1233579999999999998743

>PLN02815 L-aspartate oxidase

Probab=99.56  E-value=4.8e-14  Score=143.82  Aligned_cols=146  Identities=20%  Similarity=0.262  Sum_probs=102.3

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc-ccCCccc-------------hh---------------
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA-WLGGQLF-------------SA---------------  139 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~-~~~g~~~-------------~~---------------  139 (356)
                      .++||||||+|.|||+||+.+++. | +|+||||....++++ |.+|.+.             ..               
T Consensus        28 ~~~DVlVVG~G~AGl~AAl~Aae~-G-~VvlleK~~~~gg~s~~a~Ggi~a~~~~~Ds~e~~~~d~~~~g~~~~d~~lv~  105 (594)
T PLN02815         28 KYFDFLVIGSGIAGLRYALEVAEY-G-TVAIITKDEPHESNTNYAQGGVSAVLDPSDSVESHMRDTIVAGAFLCDEETVR  105 (594)
T ss_pred             cccCEEEECccHHHHHHHHHHhhC-C-CEEEEECCCCCCCcHHHhhcccccCCCCCCCHHHHHHHHHHhccCCCcHHHHH
Confidence            358999999999999999999999 8 999999998766533 2322210             00               


Q ss_pred             -hhcc-chHHHHHHHhCCCccccCC--eE----------EEe-----chHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEe
Q 018414          140 -MVVR-KPAHIFLDELGIDYDEQDN--YV----------VIK-----HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK  200 (356)
Q Consensus       140 -~~~~-~~~~~~l~~~G~~~~~~~~--~~----------~~~-----~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~  200 (356)
                       ++.+ ...++||+++|++|+...+  +.          ...     ....+...|++.+.+..|+++++++.+++|+.+
T Consensus       106 ~~~~~s~e~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~R~~~~~d~tG~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~  185 (594)
T PLN02815        106 VVCTEGPERVKELIAMGASFDHGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVKNDPNITFFEHHFAIDLLTS  185 (594)
T ss_pred             HHHHHHHHHHHHHHHhCCeeeecCCCCccccCCCCCccCceeecCCCCHHHHHHHHHHHHHhcCCCEEEeceEhheeeee
Confidence             0011 1346899999999975321  11          111     234677888888875679999999999999986


Q ss_pred             -CC---eEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCCC
Q 018414          201 -GG---RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFG  245 (356)
Q Consensus       201 -~~---~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~~  245 (356)
                       ++   +|.|+.+.+      ..   ++....+.||.||+||||++.+.
T Consensus       186 ~~g~~~~v~Gv~~~~------~~---~g~~~~i~AkaVILATGG~g~~~  225 (594)
T PLN02815        186 QDGGSIVCHGADVLD------TR---TGEVVRFISKVTLLASGGAGHIY  225 (594)
T ss_pred             cCCCccEEEEEEEEE------cC---CCeEEEEEeceEEEcCCcceeeC
Confidence             34   388887632      11   12346789999999999988543

>PRK07121 hypothetical protein; Validated

Probab=99.56  E-value=9.6e-14  Score=139.43  Aligned_cols=142  Identities=25%  Similarity=0.389  Sum_probs=100.0

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCcc----------------------chhh------
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQL----------------------FSAM------  140 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~----------------------~~~~------  140 (356)
                      .++||||||+|.+|++||++|+++ |.+|+||||....||++...+..                      ...+      
T Consensus        19 ~~~DVvVVGaG~AGl~AA~~aae~-G~~VillEK~~~~gG~s~~sgG~~~~~~g~~~q~~~g~~d~~~~~~~~~~~~~~~   97 (492)
T PRK07121         19 DEADVVVVGFGAAGACAAIEAAAA-GARVLVLERAAGAGGATALSGGVIYLGGGTAVQKAAGFEDSPENMYAYLRVAVGP   97 (492)
T ss_pred             CccCEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCCCCCCcccccCeEEEeCCCcHHHHhcCCCCCHHHHHHHHHHHhCC
Confidence            369999999999999999999999 99999999998777654321110                      0000      


Q ss_pred             ----------hc-cchHHHHHHHhCCCccccC--------------CeE-------------------EEe------chH
Q 018414          141 ----------VV-RKPAHIFLDELGIDYDEQD--------------NYV-------------------VIK------HAA  170 (356)
Q Consensus       141 ----------~~-~~~~~~~l~~~G~~~~~~~--------------~~~-------------------~~~------~~~  170 (356)
                                +. ....++||+++|++|....              .+.                   ...      ...
T Consensus        98 ~~d~~l~~~~~~~s~~~i~wl~~~Gv~f~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  177 (492)
T PRK07121         98 GVDEEKLRRYCEGSVEHFDWLEGLGVPFERSFFPEKTSYPPNDEGLYYSGNEKAWPFAEIAKPAPRGHRVQGPGDSGGGA  177 (492)
T ss_pred             CCCHHHHHHHHHccHHHHHHHHHcCcEEEeccCCCcccCCCCCcccccchhhcchhhhhccCCcccceecCCCCCCCchH
Confidence                      00 0134689999998875321              000                   000      234


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEe-CCeEEEEEEcceeeecccCCCCCCCCeEEEc-CEEEEcCCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEA-KVVVSSCGHDGP  243 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A-k~VI~AtGg~~~  243 (356)
                      .+...|.+.+. +.|+++++++++++|+.+ +++|.||....           .++...++| |.||+|||+++.
T Consensus       178 ~~~~~L~~~~~-~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~-----------~~~~~~i~a~k~VVlAtGg~~~  240 (492)
T PRK07121        178 MLMDPLAKRAA-ALGVQIRYDTRATRLIVDDDGRVVGVEARR-----------YGETVAIRARKGVVLAAGGFAM  240 (492)
T ss_pred             HHHHHHHHHHH-hCCCEEEeCCEEEEEEECCCCCEEEEEEEe-----------CCcEEEEEeCCEEEECCCCcCc
Confidence            56777777775 679999999999999987 46899987742           112467899 999999998873

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=99.55  E-value=7.3e-14  Score=137.25  Aligned_cols=141  Identities=26%  Similarity=0.361  Sum_probs=93.7

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcccc-CCcc----------------chh---------------
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWL-GGQL----------------FSA---------------  139 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~-~g~~----------------~~~---------------  139 (356)
                      ||||||+|.+|++||+.|+++ |.+|+||||....|+++.. .+.+                ...               
T Consensus         1 DVvVIG~G~AGl~AA~~Aae~-G~~V~lvek~~~~gg~~~~s~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~   79 (417)
T PF00890_consen    1 DVVVIGGGLAGLAAAIEAAEA-GAKVLLVEKGPRLGGSSAFSSGGFDAAGTPPQREAGIEDSPEEFFQDIMAAGGGLNDP   79 (417)
T ss_dssp             SEEEE-SSHHHHHHHHHHHHT-TT-EEEEESSSGGGSGGGGTCSEEEESSSHSSHHTTTTCHHHHHHHHHHHHTTT-S-H
T ss_pred             CEEEECCCHHHHHHHHHHhhh-cCeEEEEEeecccccccccccCceeeecccccccccccccccccceeeeccccccccc
Confidence            899999999999999999999 9999999999876664321 1110                000               


Q ss_pred             ----hhcc--chHHHHHHHhCCCcccc--------------CCeEEEe-----------chHHHHHHHHHHHHcCCCcEE
Q 018414          140 ----MVVR--KPAHIFLDELGIDYDEQ--------------DNYVVIK-----------HAALFTSTIMSKLLARPNVKL  188 (356)
Q Consensus       140 ----~~~~--~~~~~~l~~~G~~~~~~--------------~~~~~~~-----------~~~~~~~~l~~~~~~~~gv~i  188 (356)
                          .+.+  ...++||.++|++|...              ..+....           ....+...|.+.++ +.|++|
T Consensus        80 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~-~~gv~i  158 (417)
T PF00890_consen   80 DLVRAFVENSPEAIDWLEELGVPFRRDEDGPFAPTPFGGHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAE-EAGVDI  158 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTT--B-BGTTSSBCEEEETTESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHH-HTTEEE
T ss_pred             chhhhhhhcccceehhhhhhcccccccccccccccccCCccccceeeeccccccccccccHHHHHHHHHHHHh-hcCeee
Confidence                0000  13468999999988771              0101111           23556677777776 678999


Q ss_pred             EcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          189 FNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       189 ~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      ++++++++|+.++++|.|+...+.      .   +++..+++|+.||+|||+++.
T Consensus       159 ~~~~~~~~Li~e~g~V~Gv~~~~~------~---~g~~~~i~A~aVIlAtGG~~~  204 (417)
T PF00890_consen  159 RFNTRVTDLITEDGRVTGVVAENP------A---DGEFVRIKAKAVILATGGFGG  204 (417)
T ss_dssp             EESEEEEEEEEETTEEEEEEEEET------T---TCEEEEEEESEEEE----BGG
T ss_pred             eccceeeeEEEeCCceeEEEEEEC------C---CCeEEEEeeeEEEeccCcccc
Confidence            999999999999999999998621      1   224568999999999998875

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=99.55  E-value=1e-13  Score=141.41  Aligned_cols=146  Identities=23%  Similarity=0.321  Sum_probs=104.1

Q ss_pred             cccEEEECCCHHHHHHHHHhhcC-CCCeEEEEeccCCCCCcc-ccCCccc-------------h----------------
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGA-WLGGQLF-------------S----------------  138 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~-~G~~V~llEk~~~~Gg~~-~~~g~~~-------------~----------------  138 (356)
                      ++||+|||+|+||++||+.+++. +|.+|+||||....++++ +.+|.+.             .                
T Consensus         3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s~~a~Gg~~~~~~~~ds~e~~~~dt~~~g~~~~d~~lv~   82 (580)
T TIGR01176         3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTGDDDSLDEHFHDTVSGGDWLCEQDVVE   82 (580)
T ss_pred             ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCchhcCCchhhhcCCCCCHHHHHHHHHHhcCCcCcHHHHH
Confidence            58999999999999999999975 258999999997666543 2222110             0                


Q ss_pred             hhhcc-chHHHHHHHhCCCccccCC--eEE----------E-----echHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEe
Q 018414          139 AMVVR-KPAHIFLDELGIDYDEQDN--YVV----------I-----KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK  200 (356)
Q Consensus       139 ~~~~~-~~~~~~l~~~G~~~~~~~~--~~~----------~-----~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~  200 (356)
                      .++.+ ...++||+++|++|+...+  +..          .     .....+.+.|++++.+..+++++.++.+++|+.+
T Consensus        83 ~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~  162 (580)
T TIGR01176        83 YFVAEAPKEMVQLEHWGCPWSRKPDGRVNVRRFGGMKKERTWFAADKTGFHMLHTLFQTSLTYPQIMRYDEWFVTDLLVD  162 (580)
T ss_pred             HHHHHhHHHHHHHHHcCCccEecCCCceeeeccCCccCCeeeecCCCCHHHHHHHHHHHHHhcCCCEEEeCeEEEEEEee
Confidence            00111 1356899999999975421  111          0     0235677888888775578999999999999998


Q ss_pred             CCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414          201 GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF  244 (356)
Q Consensus       201 ~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~  244 (356)
                      +++|.|+...+      ..   +++...+.|+.||+|||+++..
T Consensus       163 ~g~v~Gv~~~~------~~---~g~~~~i~AkaVILATGG~~~~  197 (580)
T TIGR01176       163 DGRVCGLVAIE------MA---EGRLVTILADAVVLATGGAGRV  197 (580)
T ss_pred             CCEEEEEEEEE------cC---CCcEEEEecCEEEEcCCCCccc
Confidence            99999987632      11   1234689999999999998854

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.54  E-value=1.3e-13  Score=141.88  Aligned_cols=145  Identities=25%  Similarity=0.417  Sum_probs=100.1

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc-ccCCcc----------------c-----------h--
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA-WLGGQL----------------F-----------S--  138 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~-~~~g~~----------------~-----------~--  138 (356)
                      .++||||||+|.||++||+.+++. |.+|+||||....++++ +.+|.+                +           +  
T Consensus         7 ~~~DVvVIG~G~AGl~AAl~Aae~-G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~ds~~~~~~D~~~~g~~l~d~~   85 (626)
T PRK07803          7 HSYDVVVIGAGGAGLRAAIEARER-GLRVAVVCKSLFGKAHTVMAEGGCAAAMGNVNPKDNWQVHFRDTMRGGKFLNNWR   85 (626)
T ss_pred             eeecEEEECcCHHHHHHHHHHHHC-CCCEEEEeccCCCCCcceecCccceeeccCCCCCCCHHHHHHHHHHHhccCCcHH
Confidence            368999999999999999999999 99999999987554322 211110                0           0  


Q ss_pred             --hhhcc--chHHHHHHHhCCCccccCC------------eEEEe-----chHHHHHHHHHHHHcCC-------C-----
Q 018414          139 --AMVVR--KPAHIFLDELGIDYDEQDN------------YVVIK-----HAALFTSTIMSKLLARP-------N-----  185 (356)
Q Consensus       139 --~~~~~--~~~~~~l~~~G~~~~~~~~------------~~~~~-----~~~~~~~~l~~~~~~~~-------g-----  185 (356)
                        ..+..  ...++||+++|++|+...+            ++...     ....+...|.+.+.+..       |     
T Consensus        86 ~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~~~~~~~~~G~~~~~  165 (626)
T PRK07803         86 MAELHAKEAPDRVWELETYGALFDRTKDGRISQRNFGGHTYPRLAHVGDRTGLELIRTLQQKIVSLQQEDHAELGDYEAR  165 (626)
T ss_pred             HHHHHHHHhHHHHHHHHHCCCceEecCCCceeeeecCCcccCeEEecCCCcHHHHHHHHHHHHHhhhccccccccCCcCc
Confidence              00111  1345789999999975321            11111     13467777777765331       5     


Q ss_pred             cEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          186 VKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       186 v~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      +++++++.+++++.++++|.|+...+      ..   +++...+.||.||+|||+++.
T Consensus       166 v~i~~~~~v~~L~~~~g~v~Gv~~~~------~~---~g~~~~i~Ak~VVlATGG~~~  214 (626)
T PRK07803        166 IKVFAECTITELLKDGGRIAGAFGYW------RE---SGRFVLFEAPAVVLATGGIGK  214 (626)
T ss_pred             eEEEeCCEEEEEEEECCEEEEEEEEE------CC---CCeEEEEEcCeEEECCCcccC
Confidence            99999999999998888999887531      11   123457999999999999764

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=99.54  E-value=1.1e-13  Score=142.93  Aligned_cols=146  Identities=20%  Similarity=0.232  Sum_probs=100.8

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc-ccCCcc------------------ch-----------
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA-WLGGQL------------------FS-----------  138 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~-~~~g~~------------------~~-----------  138 (356)
                      .++||||||+|.||+.||+.+++. |++|+||||....++.+ +..|.+                  +.           
T Consensus         4 ~~~DVlVIG~G~AGl~AAi~Aae~-G~~VivleK~~~~~s~s~~a~GGi~a~~g~~~~g~~Ds~e~~~~Dt~k~~~~~~D   82 (657)
T PRK08626          4 IYTDALVIGAGLAGLRVAIAAAQR-GLDTIVLSLVPAKRSHSAAAQGGMQASLGNAVKGEGDNEDVHFADTVKGSDWGCD   82 (657)
T ss_pred             eeccEEEECccHHHHHHHHHHHHc-CCCEEEEeCCCCCCcchHHHhhhHHhhccccccCCCCCHHHHHHHHHHhcCCCCC
Confidence            368999999999999999999999 99999999987654332 111100                  00           


Q ss_pred             ----hhhcc--chHHHHHHHhCCCccccCC----------------------------e------EEE----echHHHHH
Q 018414          139 ----AMVVR--KPAHIFLDELGIDYDEQDN----------------------------Y------VVI----KHAALFTS  174 (356)
Q Consensus       139 ----~~~~~--~~~~~~l~~~G~~~~~~~~----------------------------~------~~~----~~~~~~~~  174 (356)
                          ..+..  ...++||.++|++|.....                            |      ...    .....+..
T Consensus        83 ~~~vr~~v~~sp~~i~~L~~~Gv~f~r~~~g~~~~~~~g~~~~~~~~~~~~~~i~~r~~GG~~~~R~~~~~d~tG~~l~~  162 (657)
T PRK08626         83 QEVARMFVHTAPKAVRELAAWGVPWTRVTAGPRTVVINGEKVTITEKEEAHGLINARDFGGTKKWRTCYTADGTGHTMLY  162 (657)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCeecCCCcccccccccccccccccccccccccccccccccceeEecCCCcHHHHHH
Confidence                00011  1346899999998865311                            0      000    01234555


Q ss_pred             HHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCCC
Q 018414          175 TIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFG  245 (356)
Q Consensus       175 ~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~~  245 (356)
                      .|.+.+. +.|+++++++.+++|+.++++|.|+.+.+      ..   +++...+.||.||+||||++...
T Consensus       163 ~L~~~~~-~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~------~~---~G~~~~i~AkaVVLATGG~g~~y  223 (657)
T PRK08626        163 AVDNEAI-KLGVPVHDRKEAIALIHDGKRCYGAVVRC------LI---TGELRAYVAKATLIATGGYGRIY  223 (657)
T ss_pred             HHHHHHH-hCCCEEEeeEEEEEEEEECCEEEEEEEEE------cC---CCcEEEEEcCeEEECCCcccCCC
Confidence            6666665 67999999999999999889999988742      11   12346789999999999988654

>TIGR00551 nadB L-aspartate oxidase

Probab=99.54  E-value=1.2e-13  Score=138.56  Aligned_cols=142  Identities=28%  Similarity=0.458  Sum_probs=102.0

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc-ccCCccc-------------hhh---------------
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA-WLGGQLF-------------SAM---------------  140 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~-~~~g~~~-------------~~~---------------  140 (356)
                      ++||+|||+|.||++||+.+++. |. |+||||....++++ |.+|.+.             ...               
T Consensus         2 ~~DVlVVG~G~AGl~AA~~aa~~-G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~   79 (488)
T TIGR00551         2 SCDVVVIGSGAAGLSAALALADQ-GR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEF   79 (488)
T ss_pred             CccEEEECccHHHHHHHHHHHhC-CC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHH
Confidence            48999999999999999999998 87 99999997655544 3222210             000               


Q ss_pred             hc-c-chHHHHHHHhCCCccccC--Ce----------EEEe-----chHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeC
Q 018414          141 VV-R-KPAHIFLDELGIDYDEQD--NY----------VVIK-----HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG  201 (356)
Q Consensus       141 ~~-~-~~~~~~l~~~G~~~~~~~--~~----------~~~~-----~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~  201 (356)
                      +. + ...++||+++|++|+...  .+          +...     ....+.+.|.+.+.+..|+++++++.+++|+.++
T Consensus        80 ~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~  159 (488)
T TIGR00551        80 VVSDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRIIEGENALDLLIET  159 (488)
T ss_pred             HHHhHHHHHHHHHHcCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECeEeeeeeccC
Confidence            00 0 135689999999987532  11          1111     2356778888887644799999999999999888


Q ss_pred             CeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414          202 GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF  244 (356)
Q Consensus       202 ~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~  244 (356)
                      +++.|+.+.+      .     +....++|+.||+|||+++..
T Consensus       160 g~v~Gv~~~~------~-----~~~~~i~A~~VVlAtGG~~~~  191 (488)
T TIGR00551       160 GRVVGVWVWN------R-----ETVETCHADAVVLATGGAGKL  191 (488)
T ss_pred             CEEEEEEEEE------C-----CcEEEEEcCEEEECCCcccCC
Confidence            8898887642      0     123578999999999998854

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=99.54  E-value=1.9e-13  Score=136.35  Aligned_cols=142  Identities=16%  Similarity=0.247  Sum_probs=99.2

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCC--CCCccc-cCCc-------------------cchhhh------
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS--PGGGAW-LGGQ-------------------LFSAMV------  141 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~--~Gg~~~-~~g~-------------------~~~~~~------  141 (356)
                      ++||||||+|++|++||+.|+++ |.+|+||||...  .||++. .+|.                   ++..+.      
T Consensus         4 ~~DVvVVG~G~aGl~AA~~aa~~-G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (466)
T PRK08274          4 MVDVLVIGGGNAALCAALAAREA-GASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLLRVTGGR   82 (466)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCCcCCCcccccCCceeeeCCCchhhccccccHHHHHHHHHHhhCCC
Confidence            58999999999999999999999 999999999863  454332 1110                   000000      


Q ss_pred             ----------c-cchHHHHHHHhCCCccccCC--e-------EEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeC
Q 018414          142 ----------V-RKPAHIFLDELGIDYDEQDN--Y-------VVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG  201 (356)
Q Consensus       142 ----------~-~~~~~~~l~~~G~~~~~~~~--~-------~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~  201 (356)
                                . ....++|+.++|++|.....  +       ........+...|.+.+. +.|++++++++|++|+.++
T Consensus        83 ~~~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~-~~gv~i~~~t~v~~l~~~~  161 (466)
T PRK08274         83 TDEALARLLIRESSDCRDWMRKHGVRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAE-RLGVEIRYDAPVTALELDD  161 (466)
T ss_pred             CCHHHHHHHHHcCHHHHHHHHhCCceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHH-HCCCEEEcCCEEEEEEecC
Confidence                      0 01345788889988754311  1       111123567777777775 6799999999999999888


Q ss_pred             CeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          202 GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       202 ~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      ++|.++.+..      .    +++...++||.||+|||+++.
T Consensus       162 g~v~gv~~~~------~----~g~~~~i~a~~VIlAtGg~~~  193 (466)
T PRK08274        162 GRFVGARAGS------A----AGGAERIRAKAVVLAAGGFES  193 (466)
T ss_pred             CeEEEEEEEc------c----CCceEEEECCEEEECCCCCCC
Confidence            8999887631      0    123467899999999998763

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.54  E-value=1.6e-13  Score=140.49  Aligned_cols=145  Identities=21%  Similarity=0.351  Sum_probs=100.5

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccc-cCCcc-----------ch------------------
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW-LGGQL-----------FS------------------  138 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~-~~g~~-----------~~------------------  138 (356)
                      .++||||||+|.|||+||+.+++. |.+|+||||....++++. ..|.+           +.                  
T Consensus        11 ~~~DVlVIG~G~AGl~AAi~Aa~~-G~~V~vleK~~~~~g~t~~a~Ggi~~~~~~~~~ds~~~~~~dt~~~g~~~~d~~~   89 (591)
T PRK07057         11 RKFDVVIVGAGGSGMRASLQLARA-GLSVAVLSKVFPTRSHTVAAQGGIGASLGNMSEDNWHYHFYDTIKGSDWLGDQDA   89 (591)
T ss_pred             ccCCEEEECccHHHHHHHHHHHHC-CCcEEEEeccCCCCCCchhccCCcccccccccccChhHhHHHHHHhcCCCCCHHH
Confidence            468999999999999999999999 999999999865443321 11111           00                  


Q ss_pred             -hhhcc--chHHHHHHHhCCCccccCC--eEE-----------------Ee-----chHHHHHHHHHHHHcCCCcEEEcC
Q 018414          139 -AMVVR--KPAHIFLDELGIDYDEQDN--YVV-----------------IK-----HAALFTSTIMSKLLARPNVKLFNA  191 (356)
Q Consensus       139 -~~~~~--~~~~~~l~~~G~~~~~~~~--~~~-----------------~~-----~~~~~~~~l~~~~~~~~gv~i~~~  191 (356)
                       ..+.+  ...++||.++|++|+...+  +..                 ..     ....+...|++.+. +.|++++++
T Consensus        90 v~~~~~~a~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~l~~~L~~~~~-~~gi~i~~~  168 (591)
T PRK07057         90 IEFMCREAPNVVYELEHFGMPFDRNADGTIYQRPFGGHTANYGEKPVQRACAAADRTGHALLHTLYQQNV-AAKTQFFVE  168 (591)
T ss_pred             HHHHHHHHHHHHHHHHhcCCcceeCCCCcEeeeccCCccccccCCccceeeecCCCChHHHHHHHHHHHH-hcCCEEEeC
Confidence             00000  1346888999999975321  110                 00     12457777887775 679999999


Q ss_pred             eEEEEEEEe-CCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414          192 VAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF  244 (356)
Q Consensus       192 ~~v~~i~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~  244 (356)
                      +.+++|+.+ +++|.|+.+.+      ..   ++....+.||.||+||||++..
T Consensus       169 ~~~~~Li~~~~g~v~Gv~~~~------~~---~g~~~~i~AkaVILATGG~~~~  213 (591)
T PRK07057        169 WMALDLIRDADGDVLGVTALE------ME---TGDVYILEAKTTLFATGGAGRI  213 (591)
T ss_pred             cEEEEEEEcCCCeEEEEEEEE------cC---CCeEEEEECCeEEECCCCcccc
Confidence            999999986 57899987632      11   1234578999999999998754

>PRK07395 L-aspartate oxidase; Provisional

Probab=99.54  E-value=7.6e-14  Score=141.58  Aligned_cols=143  Identities=24%  Similarity=0.416  Sum_probs=101.1

Q ss_pred             CCcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc-ccCCccc-------------hhh-------------
Q 018414           88 YADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA-WLGGQLF-------------SAM-------------  140 (356)
Q Consensus        88 ~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~-~~~g~~~-------------~~~-------------  140 (356)
                      ..++||||||+|.||++||+.++ . |.+|+||||....|+++ +.+|.+.             ...             
T Consensus         7 ~~e~DVlVVG~G~AGl~AAi~A~-~-G~~V~lieK~~~~gg~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~~~~d~~lv   84 (553)
T PRK07395          7 PSQFDVLVVGSGAAGLYAALCLP-S-HLRVGLITKDTLKTSASDWAQGGIAAAIAPDDSPKLHYEDTLKAGAGLCDPEAV   84 (553)
T ss_pred             cccCCEEEECccHHHHHHHHHhh-c-CCCEEEEEccCCCCCchhhhcccceecccCCCCHHHHHHHHHHhcCCCCCHHHH
Confidence            34699999999999999999985 5 89999999998766544 3322211             000             


Q ss_pred             --hc-c-chHHHHHHHhCCCccccCC-e----------EEEe-----chHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEe
Q 018414          141 --VV-R-KPAHIFLDELGIDYDEQDN-Y----------VVIK-----HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK  200 (356)
Q Consensus       141 --~~-~-~~~~~~l~~~G~~~~~~~~-~----------~~~~-----~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~  200 (356)
                        +. + ...++||.++|++|+.... +          +...     ....+...|.+.+.++.|+++++++.+++|+.+
T Consensus        85 ~~~~~~s~~~i~wL~~~Gv~f~~~~~~~~~~~~~g~s~~r~~~~~d~~G~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~  164 (553)
T PRK07395         85 RFLVEQAPEAIASLVEMGVAFDRHGQHLALTLEAAHSRPRVLHAADTTGRAIVTTLTEQVLQRPNIEIISQALALSLWLE  164 (553)
T ss_pred             HHHHHHHHHHHHHHHhcCCeeecCCCceeeecccccccCeEEEeCCCChHHHHHHHHHHHhhcCCcEEEECcChhhheec
Confidence              00 1 1346899999999975321 1          0111     235677888887765669999999999999986


Q ss_pred             C--CeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          201 G--GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       201 ~--~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      +  ++|.|+.+..           ++....+.||.||+||||++.
T Consensus       165 ~~~g~v~Gv~~~~-----------~g~~~~i~AkaVILATGG~~~  198 (553)
T PRK07395        165 PETGRCQGISLLY-----------QGQITWLRAGAVILATGGGGQ  198 (553)
T ss_pred             CCCCEEEEEEEEE-----------CCeEEEEEcCEEEEcCCCCcc
Confidence            3  7899987641           122456899999999999764

>PRK07804 L-aspartate oxidase; Provisional

Probab=99.53  E-value=2.1e-13  Score=138.26  Aligned_cols=147  Identities=24%  Similarity=0.318  Sum_probs=101.1

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccc-cCCccc-------------hhh--------------
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW-LGGQLF-------------SAM--------------  140 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~-~~g~~~-------------~~~--------------  140 (356)
                      .++||||||+|.||++||+.+++. |.+|+||||....+|++. .+|.+.             ...              
T Consensus        15 ~~~DVlVIG~G~AGl~AAi~aae~-G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v~   93 (541)
T PRK07804         15 DAADVVVVGSGVAGLTAALAARRA-GRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAVR   93 (541)
T ss_pred             cccCEEEECccHHHHHHHHHHHHc-CCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHHH
Confidence            368999999999999999999999 999999999986654332 222110             000              


Q ss_pred             --hcc-chHHHHHHHhCCCccccC--CeEE----------Ee------chHHHHHHHHHHHHcCCCcEEEcCeEEEEEEE
Q 018414          141 --VVR-KPAHIFLDELGIDYDEQD--NYVV----------IK------HAALFTSTIMSKLLARPNVKLFNAVAAEDLIV  199 (356)
Q Consensus       141 --~~~-~~~~~~l~~~G~~~~~~~--~~~~----------~~------~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~  199 (356)
                        +.+ ...++||.++|++|+...  .+..          ..      ....+.+.|.+++. +.++++++++.+++++.
T Consensus        94 ~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~-~~gV~i~~~~~v~~Li~  172 (541)
T PRK07804         94 SLVAEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVR-ADPLDIREHALALDLLT  172 (541)
T ss_pred             HHHHHHHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHH-hCCCEEEECeEeeeeEE
Confidence              001 134689999999997532  1111          11      23467778877775 56899999999999998


Q ss_pred             eC-CeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          200 KG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       200 ~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      ++ ++|.|+.+.+      ..++..+....+.||.||+|||+++.
T Consensus       173 ~~~g~v~Gv~~~~------~~~~~~~g~~~i~Ak~VIlATGG~~~  211 (541)
T PRK07804        173 DGTGAVAGVTLHV------LGEGSPDGVGAVHAPAVVLATGGLGQ  211 (541)
T ss_pred             cCCCeEEEEEEEe------ccCCCCCcEEEEEcCeEEECCCCCCC
Confidence            75 6899987631      00000011357899999999999874

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=99.53  E-value=1.4e-13  Score=141.22  Aligned_cols=146  Identities=23%  Similarity=0.359  Sum_probs=100.6

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcC-CCCeEEEEeccCCCCCccccCCc--c---------chhh----------------
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLGGQ--L---------FSAM----------------  140 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~-~G~~V~llEk~~~~Gg~~~~~g~--~---------~~~~----------------  140 (356)
                      .++||||||+|.||++||+.+++. +|.+|+||||....+++++.+|.  +         +..+                
T Consensus        10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~~l   89 (608)
T PRK06854         10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGAVAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVREDL   89 (608)
T ss_pred             eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcccccCccccccccccCCCHHHHHHHHHHhccCCCCHHH
Confidence            368999999999999999999885 48999999998754444333221  0         0000                


Q ss_pred             ---hc-c-chHHHHHHHhCCCccccCC--eEE------EechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEE
Q 018414          141 ---VV-R-KPAHIFLDELGIDYDEQDN--YVV------IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGV  207 (356)
Q Consensus       141 ---~~-~-~~~~~~l~~~G~~~~~~~~--~~~------~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv  207 (356)
                         +. + ...++||+++|++|.....  +..      ......+...|.+.+.+..|+++++++.|++++.++++|.||
T Consensus        90 v~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~g~~~~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~g~v~Gv  169 (608)
T PRK06854         90 VYDIARHVDSVVHLFEEWGLPIWKDENGKYVRRGRWQIMINGESYKPIVAEAAKKALGDNVLNRVFITDLLVDDNRIAGA  169 (608)
T ss_pred             HHHHHHhHHHHHHHHHHcCCeeeecCCCCccccCCccCCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEEEEeCCEEEEE
Confidence               00 0 1356889999999865421  111      113446667777777644459999999999999888899988


Q ss_pred             EEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          208 VTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       208 ~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      ...+      ..   +++...++||.||+|||+++.
T Consensus       170 ~~~~------~~---~g~~~~i~AkaVILATGG~~~  196 (608)
T PRK06854        170 VGFS------VR---ENKFYVFKAKAVIVATGGAAG  196 (608)
T ss_pred             EEEE------cc---CCcEEEEECCEEEECCCchhh
Confidence            6521      01   112357999999999999874

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=99.53  E-value=1.7e-13  Score=139.38  Aligned_cols=150  Identities=25%  Similarity=0.321  Sum_probs=100.1

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC--CCCCccc-cCCcc------------------------------
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV--SPGGGAW-LGGQL------------------------------  136 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~--~~Gg~~~-~~g~~------------------------------  136 (356)
                      ++||||||+|.+||+||+.+++. |++|+||||..  ..||.+. .+|.+                              
T Consensus         4 ~~DVvVVG~G~AGl~AAl~Aa~~-G~~VivlEK~~~~~~GG~s~~s~Gg~~~~~~~~q~~~gi~ds~e~~~~d~~~~~~~   82 (549)
T PRK12834          4 DADVIVVGAGLAGLVAAAELADA-GKRVLLLDQENEANLGGQAFWSLGGLFLVDSPEQRRLGIKDSLELALQDWLGSAGF   82 (549)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCCCCCCCCceeccCCceeccCCHHHHhcCcccCHHHHHHHHHhccCC
Confidence            58999999999999999999999 99999999998  5565432 11110                              


Q ss_pred             -----------chhhhc--cchHHHHHHHhCCCccccC---------------CeEEE----echHHHHHHHHHHHH---
Q 018414          137 -----------FSAMVV--RKPAHIFLDELGIDYDEQD---------------NYVVI----KHAALFTSTIMSKLL---  181 (356)
Q Consensus       137 -----------~~~~~~--~~~~~~~l~~~G~~~~~~~---------------~~~~~----~~~~~~~~~l~~~~~---  181 (356)
                                 ...++.  ....++||+++|++|....               .++..    .....+...|.+.+.   
T Consensus        83 ~~~~~~~~~~~~~~~~~~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~G~~~~~~l~~~~~~~~  162 (549)
T PRK12834         83 DRPEDHWPRQWAEAYVDFAAGEKRSWLHSLGLRFFPVVGWAERGGGDAGGHGNSVPRFHITWGTGPGVVEPFERRVREAA  162 (549)
T ss_pred             CCccccchHHHHHHHHHhCCHHHHHHHHHcCCeeEecCCccccCCcccCCcccccCceecCCCCcHHHHHHHHHHHHHHH
Confidence                       001111  1356789999999885321               01000    012345666665543   


Q ss_pred             cCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCC-------C-CCCCCeEEEcCEEEEcCCCCCCC
Q 018414          182 ARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDT-------Q-SCMDPNVMEAKVVVSSCGHDGPF  244 (356)
Q Consensus       182 ~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~-------~-~~g~~~~i~Ak~VI~AtGg~~~~  244 (356)
                      +..++++++++++++|+.++++|.||.+..    ...+.       . ..+....+.||.||+||||++..
T Consensus       163 ~~~gv~i~~~t~~~~Li~~~g~V~Gv~~~~----~~~~~~~~~~~~~~~~~~~~~i~AkaVILATGGf~~n  229 (549)
T PRK12834        163 ARGLVRFRFRHRVDELVVTDGAVTGVRGTV----LEPSDAERGEASSREVVGEFELRAQAVIVTSGGIGGN  229 (549)
T ss_pred             HhCCceEEecCEeeEEEEeCCEEEEEEEEe----cccccccccccccccccceEEEecCEEEEeCCCcccC
Confidence            244699999999999999889999998631    00000       0 00123578999999999998853

>PRK09077 L-aspartate oxidase; Provisional

Probab=99.51  E-value=2.9e-13  Score=137.15  Aligned_cols=146  Identities=23%  Similarity=0.372  Sum_probs=102.5

Q ss_pred             CCcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCc-cccCCccc-------------hhhh------------
Q 018414           88 YADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG-AWLGGQLF-------------SAMV------------  141 (356)
Q Consensus        88 ~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~-~~~~g~~~-------------~~~~------------  141 (356)
                      ..++||||||+|.||++||+.|++.  .+|+||||....+++ .|.+|.+.             ...+            
T Consensus         6 ~~~~DVlVVG~G~AGl~AA~~aa~~--~~VilveK~~~~~g~t~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v   83 (536)
T PRK09077          6 EHQCDVLIIGSGAAGLSLALRLAEH--RRVAVLSKGPLSEGSTFYAQGGIAAVLDETDSIESHVEDTLIAGAGLCDEDAV   83 (536)
T ss_pred             cccCCEEEECchHHHHHHHHHHHHC--CCEEEEeccCCCCCChhhccCCeeeccCCCccHHHHHHHHHHHccCCCCHHHH
Confidence            3468999999999999999999874  799999999766654 34333211             0000            


Q ss_pred             ---c-c-chHHHHHHHhCCCccccC------CeEE----------Ee-----chHHHHHHHHHHHHcCCCcEEEcCeEEE
Q 018414          142 ---V-R-KPAHIFLDELGIDYDEQD------NYVV----------IK-----HAALFTSTIMSKLLARPNVKLFNAVAAE  195 (356)
Q Consensus       142 ---~-~-~~~~~~l~~~G~~~~~~~------~~~~----------~~-----~~~~~~~~l~~~~~~~~gv~i~~~~~v~  195 (356)
                         . + ...++||+++|++|+...      .|..          ..     ....+...|++++.+..|+++++++.++
T Consensus        84 ~~~~~~~~~~i~~L~~~Gv~f~~~~~~~g~~~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~I~v~~~~~v~  163 (536)
T PRK09077         84 RFIAENAREAVQWLIDQGVPFTTDEQANGEEGYHLTREGGHSHRRILHAADATGKAVQTTLVERARNHPNITVLERHNAI  163 (536)
T ss_pred             HHHHHHHHHHHHHHHHcCCccccCCCCCccccccccCCCCccCCceEecCCCCHHHHHHHHHHHHHhCCCcEEEeeEEee
Confidence               0 1 134689999999997532      1211          11     1245667788877766799999999999


Q ss_pred             EEEEeC------CeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414          196 DLIVKG------GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF  244 (356)
Q Consensus       196 ~i~~~~------~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~  244 (356)
                      +++.++      ++|.|+...+      ..   +++...+.||.||+|||+++..
T Consensus       164 ~Li~~~~~~~~~g~v~Gv~~~~------~~---~g~~~~i~Ak~VVlATGG~~~~  209 (536)
T PRK09077        164 DLITSDKLGLPGRRVVGAYVLN------RN---KERVETIRAKFVVLATGGASKV  209 (536)
T ss_pred             eeeecccccCCCCEEEEEEEEE------CC---CCcEEEEecCeEEECCCCCCCC
Confidence            998764      7899988642      11   1234679999999999998854

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=99.51  E-value=2.3e-13  Score=138.97  Aligned_cols=142  Identities=29%  Similarity=0.361  Sum_probs=99.2

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc-ccCCccc----------------hhh--------------
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA-WLGGQLF----------------SAM--------------  140 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~-~~~g~~~----------------~~~--------------  140 (356)
                      ||||||+|.+|++||+.|++. |.+|+||||....++++ +..|.+.                ...              
T Consensus         1 DVlVVG~G~AGl~AA~~aae~-G~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~~~~d~~e~~~~d~~~~~~~~~d~~~v~   79 (566)
T TIGR01812         1 DVVIVGAGLAGLRAAVEAAKA-GLNTAVISKVYPTRSHTVAAQGGMAAALGNVDPDDSWEWHAYDTVKGSDYLADQDAVE   79 (566)
T ss_pred             CEEEECccHHHHHHHHHHHHC-CCcEEEEeccCCCCCcchhhccCeEeecCCCCCCccHHHHHHHHHHHhCCCCCHHHHH
Confidence            899999999999999999999 99999999987654432 2111110                000              


Q ss_pred             -hc-c-chHHHHHHHhCCCccccCC--eEE----------E-----echHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEe
Q 018414          141 -VV-R-KPAHIFLDELGIDYDEQDN--YVV----------I-----KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK  200 (356)
Q Consensus       141 -~~-~-~~~~~~l~~~G~~~~~~~~--~~~----------~-----~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~  200 (356)
                       +. + ...++||+++|++|+....  +..          .     .....+...|++.+. +.|+++++++.+++|+.+
T Consensus        80 ~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~-~~gv~i~~~~~v~~L~~~  158 (566)
T TIGR01812        80 YMCQEAPKAILELEHWGVPFSRTPDGRIAQRPFGGHSKDRTCYAADKTGHALLHTLYEQCL-KLGVSFFNEYFALDLIHD  158 (566)
T ss_pred             HHHHHHHHHHHHHHHcCCcceecCCCcEeeccccccccCeeEECCCCCHHHHHHHHHHHHH-HcCCEEEeccEEEEEEEe
Confidence             00 0 1346899999999865321  110          0     013456677777776 559999999999999998


Q ss_pred             CCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414          201 GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF  244 (356)
Q Consensus       201 ~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~  244 (356)
                      +++|.|+...+      ..   +++...++||.||+|||+++..
T Consensus       159 ~g~v~Gv~~~~------~~---~g~~~~i~Ak~VVlAtGG~~~~  193 (566)
T TIGR01812       159 DGRVRGVVAYD------LK---TGEIVFFRAKAVVLATGGYGRI  193 (566)
T ss_pred             CCEEEEEEEEE------CC---CCcEEEEECCeEEECCCcccCC
Confidence            89999987632      11   1234579999999999998743

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.51  E-value=3.5e-13  Score=136.85  Aligned_cols=143  Identities=22%  Similarity=0.275  Sum_probs=98.9

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCC-CCCc-cccCCccc-------------hhh-------------
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS-PGGG-AWLGGQLF-------------SAM-------------  140 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~-~Gg~-~~~~g~~~-------------~~~-------------  140 (356)
                      .++||||||+|.||++||+.+ +. |.+|+||||... .||+ .+.+|.+.             ..+             
T Consensus         6 ~~~DVlVVG~G~AGl~AAi~A-~~-G~~VilleK~~~~~gG~s~~a~gg~~~~~~~~d~~~~~~~d~~~~~~~~~d~~lv   83 (543)
T PRK06263          6 MITDVLIIGSGGAGARAAIEA-ER-GKNVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAYLNDPKLV   83 (543)
T ss_pred             eccCEEEECccHHHHHHHHHH-hc-CCCEEEEEccCCCCCccccccCceEEEeCCCCCCHHHHHHHHHHHhcCCCCHHHH
Confidence            358999999999999999999 88 999999999864 3332 23222110             000             


Q ss_pred             --hc-c-chHHHHHHHhCCCccccCC--eE----------EEe-----chHHHHHHHHHHHHcCCCcEEEcCeEEEEEEE
Q 018414          141 --VV-R-KPAHIFLDELGIDYDEQDN--YV----------VIK-----HAALFTSTIMSKLLARPNVKLFNAVAAEDLIV  199 (356)
Q Consensus       141 --~~-~-~~~~~~l~~~G~~~~~~~~--~~----------~~~-----~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~  199 (356)
                        +. + ...++||+++|++|....+  +.          ...     ....+...|.+.+. +.|+++++++.+++|+.
T Consensus        84 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~-~~gv~i~~~t~v~~Li~  162 (543)
T PRK06263         84 EILVKEAPKRLKDLEKFGALFDRTEDGEIAQRPFGGQSFNRTCYAGDRTGHEMMMGLMEYLI-KERIKILEEVMAIKLIV  162 (543)
T ss_pred             HHHHHHHHHHHHHHHHcCCcceeCCCCceeecccCCeEcCeEEECCCCCHHHHHHHHHHHHh-cCCCEEEeCeEeeeeEE
Confidence              00 0 1346899999999875321  11          110     23567777877776 57999999999999998


Q ss_pred             eCCe-EEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          200 KGGR-VGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       200 ~~~~-v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      ++++ |.|+...+      ..   +++...++||.||+|||+++.
T Consensus       163 ~~~~~v~Gv~~~~------~~---~g~~~~i~AkaVIlATGG~~~  198 (543)
T PRK06263        163 DENREVIGAIFLD------LR---NGEIFPIYAKATILATGGAGQ  198 (543)
T ss_pred             eCCcEEEEEEEEE------CC---CCcEEEEEcCcEEECCCCCCC
Confidence            7764 88887631      01   123467999999999999874

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.51  E-value=4.2e-13  Score=137.29  Aligned_cols=146  Identities=15%  Similarity=0.195  Sum_probs=99.7

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccc-cCCccc----------------hh-------------
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW-LGGQLF----------------SA-------------  139 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~-~~g~~~----------------~~-------------  139 (356)
                      .+||||||+|.||++||+.+++. |++|+||||....++++. .+|.+.                ..             
T Consensus         3 ~~DVlVVG~G~AGl~AAi~Aa~~-G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~~   81 (589)
T PRK08641          3 KGKVIVVGGGLAGLMATIKAAEA-GVHVDLFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWIHFDDTVYGGDFLANQPP   81 (589)
T ss_pred             CccEEEECchHHHHHHHHHHHHc-CCcEEEEEccCCCCCcccccCCCeEEecCcCCCCCCHHHHHHHHHHhcCCcCCHHH
Confidence            47999999999999999999999 999999999876554332 212110                00             


Q ss_pred             --hhc-c-chHHHHHHHhCCCccccCC--eEE----------Ee-----chHHHHHHHHHHHHcC---CCcEEEcCeEEE
Q 018414          140 --MVV-R-KPAHIFLDELGIDYDEQDN--YVV----------IK-----HAALFTSTIMSKLLAR---PNVKLFNAVAAE  195 (356)
Q Consensus       140 --~~~-~-~~~~~~l~~~G~~~~~~~~--~~~----------~~-----~~~~~~~~l~~~~~~~---~gv~i~~~~~v~  195 (356)
                        .+. + ...++||+++|++|+...+  +..          ..     ....+...|.+.+.+.   .+++++.++.++
T Consensus        82 v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~tG~~i~~~L~~~~~~~~~~~~i~i~~~~~~~  161 (589)
T PRK08641         82 VKAMCEAAPGIIHLLDRMGVMFNRTPEGLLDFRRFGGTLHHRTAFAGATTGQQLLYALDEQVRRYEVAGLVTKYEGWEFL  161 (589)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCcccCCCCcEeeeccCCeecccccccCCCcHHHHHHHHHHHHHhhhccCCcEEEeeEEEE
Confidence              001 1 1346899999999965321  110          10     1345666776665432   238999999999


Q ss_pred             EEEEe-CCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCCC
Q 018414          196 DLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFG  245 (356)
Q Consensus       196 ~i~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~~  245 (356)
                      +++.+ +++|.||.+.+      ..+   ++...+.||.||+||||++...
T Consensus       162 ~Li~~~~g~v~Gv~~~~------~~~---g~~~~i~AkaVILATGG~~~~y  203 (589)
T PRK08641        162 GAVLDDEGVCRGIVAQD------LFT---MEIESFPADAVIMATGGPGIIF  203 (589)
T ss_pred             EEEECCCCEEEEEEEEE------CCC---CcEEEEECCEEEECCCCCcCCC
Confidence            99985 68999998742      111   1245789999999999988543

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=99.51  E-value=3.2e-13  Score=133.30  Aligned_cols=136  Identities=26%  Similarity=0.393  Sum_probs=90.8

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHh----------------
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDEL----------------  153 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~----------------  153 (356)
                      +|||+|||||++|++||+.|+++ |++|+||||...+|.....++.++...+..- ..++....                
T Consensus         5 ~~DViIVGaGpAG~~aA~~La~~-G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l-~~~~~~~~~~~~~~~~~~~~~~~~   82 (428)
T PRK10157          5 IFDAIIVGAGLAGSVAALVLARE-GAQVLVIERGNSAGAKNVTGGRLYAHSLEHI-IPGFADSAPVERLITHEKLAFMTE   82 (428)
T ss_pred             cCcEEEECcCHHHHHHHHHHHhC-CCeEEEEEcCCCCCCcccccceechhhHHHH-hhhhhhcCcccceeeeeeEEEEcC
Confidence            59999999999999999999999 9999999999888765444443332111000 00000000                


Q ss_pred             -C---CCcccc-----CCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCC
Q 018414          154 -G---IDYDEQ-----DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCM  224 (356)
Q Consensus       154 -G---~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g  224 (356)
                       +   +.+...     ....+......|.+.|.+.+. +.|++++++++|+++..+++++.++...              
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~-~~Gv~i~~~~~V~~i~~~~g~v~~v~~~--------------  147 (428)
T PRK10157         83 KSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAE-EAGAQLITGIRVDNLVQRDGKVVGVEAD--------------  147 (428)
T ss_pred             CCceeeccccccccCCCCCceeeEHHHHHHHHHHHHH-HCCCEEECCCEEEEEEEeCCEEEEEEcC--------------
Confidence             0   011000     001122345677778888776 6799999999999998888877665432              


Q ss_pred             CCeEEEcCEEEEcCCCCCC
Q 018414          225 DPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       225 ~~~~i~Ak~VI~AtGg~~~  243 (356)
                       ..+++|+.||+|+|..+.
T Consensus       148 -g~~i~A~~VI~A~G~~s~  165 (428)
T PRK10157        148 -GDVIEAKTVILADGVNSI  165 (428)
T ss_pred             -CcEEECCEEEEEeCCCHH
Confidence             357899999999997653

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=99.50  E-value=2.1e-13  Score=131.56  Aligned_cols=154  Identities=25%  Similarity=0.453  Sum_probs=115.6

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCC-CCccccCCccch----------------------------hhhc
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSP-GGGAWLGGQLFS----------------------------AMVV  142 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~-Gg~~~~~g~~~~----------------------------~~~~  142 (356)
                      ||+|||+|.|||++|+.|++.  .+|+||-|.... +.+.|.+|.+..                            ..+.
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~--~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv   86 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPS--FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIV   86 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCCC--CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence            999999999999999999875  899999998754 455676665321                            0111


Q ss_pred             -c-chHHHHHHHhCCCccccCC--eEEEe----------c-----hHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCC-
Q 018414          143 -R-KPAHIFLDELGIDYDEQDN--YVVIK----------H-----AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG-  202 (356)
Q Consensus       143 -~-~~~~~~l~~~G~~~~~~~~--~~~~~----------~-----~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~-  202 (356)
                       + ...++||.++|++|+...+  |.+..          |     .+.++..|++++++.++|+++.++.+.+|+.+++ 
T Consensus        87 ~~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~  166 (518)
T COG0029          87 SEAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGI  166 (518)
T ss_pred             HhHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCc
Confidence             1 1457899999999998753  44321          1     3678899999998789999999999999999988 


Q ss_pred             eEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCCCCccchhhhccCc
Q 018414          203 RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGM  257 (356)
Q Consensus       203 ~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~~~~~~~~~~~~g~  257 (356)
                      .+.|+.+.+      ..    ++...++|+.||+||||.|.+.....+.....|.
T Consensus       167 ~~~Gv~~~~------~~----~~~~~~~a~~vVLATGG~g~ly~~TTNp~~~~Gd  211 (518)
T COG0029         167 GVAGVLVLN------RN----GELGTFRAKAVVLATGGLGGLYAYTTNPKGSTGD  211 (518)
T ss_pred             eEeEEEEec------CC----CeEEEEecCeEEEecCCCcccccccCCCcccccc
Confidence            555888742      10    1257899999999999999777655555555555

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=99.50  E-value=2.1e-13  Score=133.27  Aligned_cols=140  Identities=23%  Similarity=0.278  Sum_probs=95.4

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhcc---chHH---HHHHHh-----CCCcc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVR---KPAH---IFLDEL-----GIDYD  158 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~---~~~~---~~l~~~-----G~~~~  158 (356)
                      +|||+||||||||++||+.|++. |++|+|+||+..+|...+.++.+....+..   ....   ......     +-.+.
T Consensus         3 ~~DVvIVGaGPAGs~aA~~la~~-G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~   81 (396)
T COG0644           3 EYDVVIVGAGPAGSSAARRLAKA-GLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVA   81 (396)
T ss_pred             eeeEEEECCchHHHHHHHHHHHc-CCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceE
Confidence            59999999999999999999999 999999999999987665533332221111   0100   000000     00000


Q ss_pred             --ccCCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEE
Q 018414          159 --EQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVS  236 (356)
Q Consensus       159 --~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~  236 (356)
                        ......+......|.+.|.+++. +.|++++.+++++++..+++.+..+....              ..+++||+||+
T Consensus        82 ~~~~~~~~y~v~R~~fd~~La~~A~-~aGae~~~~~~~~~~~~~~~~~~~~~~~~--------------~~e~~a~~vI~  146 (396)
T COG0644          82 IEVPVGEGYIVDRAKFDKWLAERAE-EAGAELYPGTRVTGVIREDDGVVVGVRAG--------------DDEVRAKVVID  146 (396)
T ss_pred             EecCCCceEEEEhHHhhHHHHHHHH-HcCCEEEeceEEEEEEEeCCcEEEEEEcC--------------CEEEEcCEEEE
Confidence              00011233455788888887876 78999999999999999887665554431              27899999999


Q ss_pred             cCCCCCCCC
Q 018414          237 SCGHDGPFG  245 (356)
Q Consensus       237 AtGg~~~~~  245 (356)
                      |+|..+.+.
T Consensus       147 AdG~~s~l~  155 (396)
T COG0644         147 ADGVNSALA  155 (396)
T ss_pred             CCCcchHHH
Confidence            999877554

>PRK07512 L-aspartate oxidase; Provisional

Probab=99.49  E-value=3.3e-13  Score=136.04  Aligned_cols=141  Identities=26%  Similarity=0.423  Sum_probs=99.1

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCC-CCCc-cccCCccch-------------hh-------------
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS-PGGG-AWLGGQLFS-------------AM-------------  140 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~-~Gg~-~~~~g~~~~-------------~~-------------  140 (356)
                      .++||||||+|.||++||+.++   +.+|+||||... .+++ .|.+|.+..             ..             
T Consensus         8 ~~~DVlVIG~G~AGl~AAl~Aa---~~~V~lleK~~~~~gg~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~g~~d~~~v   84 (513)
T PRK07512          8 LTGRPVIVGGGLAGLMAALKLA---PRPVVVLSPAPLGEGASSAWAQGGIAAALGPDDSPALHAADTLAAGAGLCDPAVA   84 (513)
T ss_pred             CcCCEEEECchHHHHHHHHHhC---cCCEEEEECCCCCCCcchHHhhhccccccCCCCCHHHHHHHHHHhhCCCCCHHHH
Confidence            4689999999999999999995   469999999976 3333 343332210             00             


Q ss_pred             --hc-c-chHHHHHHHhCCCccccCC--eEE----------Ee------chHHHHHHHHHHHHcCCCcEEEcCeEEEEEE
Q 018414          141 --VV-R-KPAHIFLDELGIDYDEQDN--YVV----------IK------HAALFTSTIMSKLLARPNVKLFNAVAAEDLI  198 (356)
Q Consensus       141 --~~-~-~~~~~~l~~~G~~~~~~~~--~~~----------~~------~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~  198 (356)
                        +. + ...++||+++|++|+....  +..          ..      ....+...|.+.+.+..|+++++++.+++|+
T Consensus        85 ~~~~~~s~~~i~wL~~~Gv~f~~~~~G~~~~~~~~~~~~~r~~~~~g~~~G~~l~~~L~~~~~~~~gV~i~~~~~v~~Li  164 (513)
T PRK07512         85 ALITAEAPAAIEDLLRLGVPFDRDADGRLALGLEAAHSRRRIVHVGGDGAGAAIMRALIAAVRATPSITVLEGAEARRLL  164 (513)
T ss_pred             HHHHHHHHHHHHHHHHhCCccccCCCCccccccccCccCCcEEEcCCCCCHHHHHHHHHHHHHhCCCCEEEECcChhhee
Confidence              00 0 1346899999999965321  111          11      1346778888877645699999999999998


Q ss_pred             EeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          199 VKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       199 ~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      .++++|.|+.+.+           .+....+.||.||+||||++.
T Consensus       165 ~~~g~v~Gv~~~~-----------~~~~~~i~Ak~VVLATGG~~~  198 (513)
T PRK07512        165 VDDGAVAGVLAAT-----------AGGPVVLPARAVVLATGGIGG  198 (513)
T ss_pred             ecCCEEEEEEEEe-----------CCeEEEEECCEEEEcCCCCcC
Confidence            8888999987642           012247899999999999874

>PRK08275 putative oxidoreductase; Provisional

Probab=99.48  E-value=6.8e-13  Score=135.02  Aligned_cols=146  Identities=25%  Similarity=0.400  Sum_probs=100.5

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcC-CCCeEEEEeccCCCCCccc--cCCcc----------ch-----------------
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAW--LGGQL----------FS-----------------  138 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~-~G~~V~llEk~~~~Gg~~~--~~g~~----------~~-----------------  138 (356)
                      .++||||||+|.||++||+.+++. +|.+|+||||....+++..  ..+.+          +.                 
T Consensus         8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~~~~~d~~   87 (554)
T PRK08275          8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDGIVDQK   87 (554)
T ss_pred             EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhcCCCccHH
Confidence            358999999999999999999975 2689999999876433221  11110          00                 


Q ss_pred             ---hhhcc-chHHHHHHHhCCCccccC--CeEE--E----------echHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEe
Q 018414          139 ---AMVVR-KPAHIFLDELGIDYDEQD--NYVV--I----------KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK  200 (356)
Q Consensus       139 ---~~~~~-~~~~~~l~~~G~~~~~~~--~~~~--~----------~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~  200 (356)
                         .+..+ ...++||+++|++|....  .+..  .          .....+.+.|.+.+. +.|+++++++.+++|+.+
T Consensus        88 ~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~~~~~~~~~~~~G~~i~~~L~~~~~-~~gv~i~~~~~v~~Li~~  166 (554)
T PRK08275         88 AVYAYAEHSFETIQQLDRWGVKFEKDETGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLK-RARVLITNRIMATRLLTD  166 (554)
T ss_pred             HHHHHHHhhHHHHHHHHHCCCeeEeCCCCCEeeecccccCcccccCCChHHHHHHHHHHHH-HCCCEEEcceEEEEEEEc
Confidence               00001 135689999999987532  1211  0          023456778877776 679999999999999987


Q ss_pred             -CCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414          201 -GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF  244 (356)
Q Consensus       201 -~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~  244 (356)
                       ++++.|+...+      ..   +++...++||.||+|||+.+..
T Consensus       167 ~~g~v~Gv~~~~------~~---~g~~~~i~Ak~VIlATGG~~~~  202 (554)
T PRK08275        167 ADGRVAGALGFD------CR---TGEFLVIRAKAVILCCGAAGRL  202 (554)
T ss_pred             CCCeEEEEEEEe------cC---CCcEEEEECCEEEECCCCcccc
Confidence             77899987632      11   1234578999999999998754

>PRK10015 oxidoreductase; Provisional

Probab=99.48  E-value=3.4e-13  Score=133.06  Aligned_cols=139  Identities=22%  Similarity=0.407  Sum_probs=91.7

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhc---c-----chHHHHHHH---------
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVV---R-----KPAHIFLDE---------  152 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~---~-----~~~~~~l~~---------  152 (356)
                      +|||||||||++|++||+.|+++ |++|+||||...+|.....++.+....+.   .     .+.......         
T Consensus         5 ~~DViIVGgGpAG~~aA~~LA~~-G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~   83 (429)
T PRK10015          5 KFDAIVVGAGVAGSVAALVMARA-GLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTEE   83 (429)
T ss_pred             ccCEEEECcCHHHHHHHHHHHhC-CCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeCC
Confidence            59999999999999999999999 99999999998876543333332211100   0     000000000         


Q ss_pred             --hCCCccccC-----CeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCC
Q 018414          153 --LGIDYDEQD-----NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMD  225 (356)
Q Consensus       153 --~G~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~  225 (356)
                        ..+.+....     ...+......|.+.|.+++. +.|++++.+++|+++..+++++.++...               
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~-~~Gv~i~~~~~V~~i~~~~~~v~~v~~~---------------  147 (429)
T PRK10015         84 SAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAE-QAGAQFIPGVRVDALVREGNKVTGVQAG---------------  147 (429)
T ss_pred             CceEeecccCCCCCCCcCceEeehhHHHHHHHHHHH-HcCCEEECCcEEEEEEEeCCEEEEEEeC---------------
Confidence              011111100     00122344667777888776 6799999999999998887887776542               


Q ss_pred             CeEEEcCEEEEcCCCCCCCC
Q 018414          226 PNVMEAKVVVSSCGHDGPFG  245 (356)
Q Consensus       226 ~~~i~Ak~VI~AtGg~~~~~  245 (356)
                      ..+++|+.||+|+|..+.++
T Consensus       148 ~~~i~A~~VI~AdG~~s~v~  167 (429)
T PRK10015        148 DDILEANVVILADGVNSMLG  167 (429)
T ss_pred             CeEEECCEEEEccCcchhhh
Confidence            25799999999999876544

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.48  E-value=5.9e-13  Score=136.20  Aligned_cols=143  Identities=22%  Similarity=0.312  Sum_probs=98.2

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc-ccCCccc-----------h----hh-------------
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA-WLGGQLF-----------S----AM-------------  140 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~-~~~g~~~-----------~----~~-------------  140 (356)
                      ++||||||+|.||++||+.|++  +.+|+|+||....++++ +.+|.+.           .    ..             
T Consensus         5 ~~DVlVIG~G~AGl~AAl~aa~--~~~VilleK~~~~~g~s~~a~Ggi~a~~~~~~~D~~e~~~~d~~~~g~~~~d~~~v   82 (583)
T PRK08205          5 RYDVVIVGAGGAGMRAAIEAGP--RARTAVLTKLYPTRSHTGAAQGGMCAALANVEEDNWEWHTFDTVKGGDYLVDQDAA   82 (583)
T ss_pred             eccEEEECccHHHHHHHHHHHh--CCCEEEEeCCCCCCCCchhhhcchhhcccCCCCCCHHHHHHHHHHhhcCCCCHHHH
Confidence            5899999999999999999986  48999999986544322 2221110           0    00             


Q ss_pred             --hc--cchHHHHHHHhCCCccccCC--eE-----------------EEe-----chHHHHHHHHHHHHcCCCcEEEcCe
Q 018414          141 --VV--RKPAHIFLDELGIDYDEQDN--YV-----------------VIK-----HAALFTSTIMSKLLARPNVKLFNAV  192 (356)
Q Consensus       141 --~~--~~~~~~~l~~~G~~~~~~~~--~~-----------------~~~-----~~~~~~~~l~~~~~~~~gv~i~~~~  192 (356)
                        +.  ....++||+++|++|+...+  +.                 ...     ....+...|++.+. +.||++++++
T Consensus        83 ~~~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~i~~~L~~~~~-~~gv~i~~~~  161 (583)
T PRK08205         83 EIMAKEAIDAVLDLEKMGLPFNRTPEGKIDQRRFGGHTRDHGKAPVRRACYAADRTGHMILQTLYQNCV-KHGVEFFNEF  161 (583)
T ss_pred             HHHHHHHHHHHHHHHHcCCccccCCCCceeecccccccccccCCCccceeccCCCCHHHHHHHHHHHHH-hcCCEEEeCC
Confidence              00  01346899999999965321  11                 000     13456777877776 6799999999


Q ss_pred             EEEEEEEeC----CeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414          193 AAEDLIVKG----GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF  244 (356)
Q Consensus       193 ~v~~i~~~~----~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~  244 (356)
                      .+++|+.++    ++|.|+...+      ..   +++...+.||.||+|||+++..
T Consensus       162 ~v~~Li~~~~~~~g~v~Gv~~~~------~~---~g~~~~i~AkaVVLATGG~~~~  208 (583)
T PRK08205        162 YVLDLLLTETPSGPVAAGVVAYE------LA---TGEIHVFHAKAVVFATGGSGRV  208 (583)
T ss_pred             EEEEEEecCCccCCcEEEEEEEE------cC---CCeEEEEEeCeEEECCCCCccc
Confidence            999999875    7899987631      11   1234578999999999998743

>PRK06185 hypothetical protein; Provisional

Probab=99.47  E-value=1.8e-12  Score=126.90  Aligned_cols=137  Identities=25%  Similarity=0.381  Sum_probs=90.5

Q ss_pred             CCcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCC-----------
Q 018414           88 YADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID-----------  156 (356)
Q Consensus        88 ~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~-----------  156 (356)
                      ..++||+|||||++|+++|+.|++. |++|+|||+.......  ..+     ........+.|+++|+.           
T Consensus         4 ~~~~dV~IvGgG~~Gl~~A~~La~~-G~~v~liE~~~~~~~~--~r~-----~~l~~~s~~~L~~lG~~~~~~~~~~~~~   75 (407)
T PRK06185          4 VETTDCCIVGGGPAGMMLGLLLARA-GVDVTVLEKHADFLRD--FRG-----DTVHPSTLELMDELGLLERFLELPHQKV   75 (407)
T ss_pred             cccccEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCccCcc--ccC-----ceeChhHHHHHHHcCChhHHhhccccee
Confidence            3469999999999999999999999 9999999998533110  000     00111122333333320           


Q ss_pred             ----------------cccc---CCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecc
Q 018414          157 ----------------YDEQ---DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMN  217 (356)
Q Consensus       157 ----------------~~~~---~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~  217 (356)
                                      +...   ..+....+...+.+.|++.+.+..|++++++++++++..+++++.++.+..      
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~------  149 (407)
T PRK06185         76 RTLRFEIGGRTVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRART------  149 (407)
T ss_pred             eeEEEEECCeEEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEc------
Confidence                            0000   011122344567778888776567999999999999998888887776531      


Q ss_pred             cCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          218 HDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       218 ~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                       .+    ...+++|+.||.|+|.++.
T Consensus       150 -~~----g~~~i~a~~vI~AdG~~S~  170 (407)
T PRK06185        150 -PD----GPGEIRADLVVGADGRHSR  170 (407)
T ss_pred             -CC----CcEEEEeCEEEECCCCchH
Confidence             00    1257999999999998764

>PRK08401 L-aspartate oxidase; Provisional

Probab=99.47  E-value=8.7e-13  Score=131.57  Aligned_cols=137  Identities=20%  Similarity=0.335  Sum_probs=97.4

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccc-------------hhh----------------h
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLF-------------SAM----------------V  141 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~-------------~~~----------------~  141 (356)
                      +||+|||+|++|++||+.|++. |.+|+||||....+.+.+..+.+.             ...                +
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae~-G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~   80 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKK-GFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVI   80 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHHC-CCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            6999999999999999999999 999999999864333333222210             000                0


Q ss_pred             cc-chHHHHHHHhCCCccccC-----CeEEE-----echHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEc
Q 018414          142 VR-KPAHIFLDELGIDYDEQD-----NYVVI-----KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTN  210 (356)
Q Consensus       142 ~~-~~~~~~l~~~G~~~~~~~-----~~~~~-----~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~  210 (356)
                      .+ ...++||.++|++|+...     .++..     .....+.+.|.+.+. +.|++++++ .++++..+++++.++.+.
T Consensus        81 ~~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~-~~gv~i~~~-~v~~l~~~~g~v~Gv~~~  158 (466)
T PRK08401         81 SKSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHAR-ELGVNFIRG-FAEELAIKNGKAYGVFLD  158 (466)
T ss_pred             HHHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHH-hcCCEEEEe-EeEEEEeeCCEEEEEEEC
Confidence            00 134589999999986431     12211     123567788888776 679999876 788998878888888763


Q ss_pred             ceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCCC
Q 018414          211 WALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFG  245 (356)
Q Consensus       211 ~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~~  245 (356)
                                     ...++++.||+|||+++...
T Consensus       159 ---------------g~~i~a~~VVLATGG~~~~~  178 (466)
T PRK08401        159 ---------------GELLKFDATVIATGGFSGLF  178 (466)
T ss_pred             ---------------CEEEEeCeEEECCCcCcCCC
Confidence                           25689999999999988643

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=99.46  E-value=9.9e-13  Score=143.75  Aligned_cols=149  Identities=19%  Similarity=0.188  Sum_probs=100.6

Q ss_pred             CCcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccc-cCCcc--------------------chhhh-----
Q 018414           88 YADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW-LGGQL--------------------FSAMV-----  141 (356)
Q Consensus        88 ~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~-~~g~~--------------------~~~~~-----  141 (356)
                      +.++||||||+|.||++||+.+++. |.+|+||||....||++. .++.+                    ....+     
T Consensus       407 t~~~DVvVVG~G~AGl~AAi~Aae~-Ga~VivlEK~~~~GG~s~~s~ggi~~~~t~~q~~~gi~D~~~~~~~d~~~~~~~  485 (1167)
T PTZ00306        407 SLPARVIVVGGGLAGCSAAIEAASC-GAQVILLEKEAKLGGNSAKATSGINGWGTRAQAKQDVLDGGKFFERDTHLSGKG  485 (1167)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEEccCCCCCchhhcccccccCCchhhhhhcccccHHHHHHHHHHhccC
Confidence            4579999999999999999999999 999999999988776542 11110                    00000     


Q ss_pred             -----------c-c-chHHHHHHHhCCCccccC-----Ce---EEE---------echHHHHHHHHHHHHc--CCCcEEE
Q 018414          142 -----------V-R-KPAHIFLDELGIDYDEQD-----NY---VVI---------KHAALFTSTIMSKLLA--RPNVKLF  189 (356)
Q Consensus       142 -----------~-~-~~~~~~l~~~G~~~~~~~-----~~---~~~---------~~~~~~~~~l~~~~~~--~~gv~i~  189 (356)
                                 . + ...++||+++|++|....     .+   ...         .....+...|.+.+.+  +.|++|+
T Consensus       486 ~~~d~~lv~~~~~~s~e~idwL~~~Gv~f~~~~~~gg~~~~r~~~~~~~~~g~~~~~G~~i~~~l~~~~~~~~~~gv~i~  565 (1167)
T PTZ00306        486 GHCDPGLVKTLSVKSADAISWLSSLGVPLTVLSQLGGASRKRCHRAPDKKDGTPVPIGFTIMRTLEDHIRTKLSGRVTIM  565 (1167)
T ss_pred             CCCCHHHHHHHHHhhHHHHHHHHHcCCCceeeeccCCCCCCceeecCcccCCCcCCcHHHHHHHHHHHHHhhccCCcEEE
Confidence                       0 0 134689999999885410     01   000         0123455666665543  2599999


Q ss_pred             cCeEEEEEEEeC---------CeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414          190 NAVAAEDLIVKG---------GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF  244 (356)
Q Consensus       190 ~~~~v~~i~~~~---------~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~  244 (356)
                      +++++++|+.++         ++|.||.+.+      . ...+++...++||.||+||||++..
T Consensus       566 ~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~------~-~~~~g~~~~i~AkaVILATGGf~~N  622 (1167)
T PTZ00306        566 TETTVTSLLSESSARPDGVREIRVTGVRYKQ------A-SDASGQVMDLLADAVILATGGFSND  622 (1167)
T ss_pred             ECCEEEEEEecCCcccCCCccceEEEEEEEe------c-ccCCCcEEEEEeceEEEecCCcccC
Confidence            999999999864         2799998752      1 0012245689999999999998853

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=99.46  E-value=1.2e-12  Score=133.79  Aligned_cols=142  Identities=19%  Similarity=0.320  Sum_probs=96.1

Q ss_pred             cEEEECCCHHHHHHHHHhh----cCCCCeEEEEeccCCCCCccccCCc--c------------chhh-------------
Q 018414           92 DVVVVGAGSAGLSCAYELS----KNPNIQIAIIEQSVSPGGGAWLGGQ--L------------FSAM-------------  140 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La----~~~G~~V~llEk~~~~Gg~~~~~g~--~------------~~~~-------------  140 (356)
                      ||||||+|.|||+||+.++    +. |.+|+||||....+.+++.+|.  +            +...             
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~-G~~VilieK~~~~~s~s~A~G~~gi~~~~~~~~g~Ds~e~~~~d~~~~~~gl~d   79 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKK-GLKIVLVEKANLERSGAVAQGLSAINTYLGTRFGENNAEDYVRYVRTDLMGLVR   79 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhC-CCeEEEEEccCCCCCCccccccchhhhhhhcccCCCCHHHHHHHHHHhcCCCCc
Confidence            8999999999999999998    67 9999999998654434433331  0            0000             


Q ss_pred             ------hcc--chHHHHHHHhCCCccccC-CeEEEe--------chHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeC--
Q 018414          141 ------VVR--KPAHIFLDELGIDYDEQD-NYVVIK--------HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG--  201 (356)
Q Consensus       141 ------~~~--~~~~~~l~~~G~~~~~~~-~~~~~~--------~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~--  201 (356)
                            +.+  ...++||.++|++|+... ......        ....+...+...+. +.++++++++.+++|+.++  
T Consensus        80 ~~lV~~lv~~s~~~i~~L~~~Gv~F~~~~~~G~~~~~g~~~~~~gG~~~~r~l~~~l~-~~~~~i~~~~~v~~Ll~d~~~  158 (614)
T TIGR02061        80 EDLIFDMARHVDDSVHLFEEWGLPLWIKPEDGKYVREGRWQIMIHGESYKPIVAEAAK-NALGDIFERIFIVKLLLDKNT  158 (614)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCceecCCCCccccCCCcccCcCchhHHHHHHHHHH-hCCCeEEcccEEEEEEecCCC
Confidence                  001  135689999999996531 111111        13344445555444 5578999999999999865  


Q ss_pred             -CeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414          202 -GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF  244 (356)
Q Consensus       202 -~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~  244 (356)
                       ++|.||.+.+      ..   +++...+.||.||+|||+++..
T Consensus       159 ~GrV~Gv~~~~------~~---~g~~~~i~AkaVVLATGG~~~l  193 (614)
T TIGR02061       159 PNRIAGAVGFN------VR---ANEVHVFKAKTVIVAAGGAVNV  193 (614)
T ss_pred             CCeEEEEEEEE------eC---CCcEEEEECCEEEECCCccccc
Confidence             7999987632      11   1234679999999999998753

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PRK08071 L-aspartate oxidase; Provisional

Probab=99.45  E-value=1e-12  Score=132.43  Aligned_cols=140  Identities=24%  Similarity=0.329  Sum_probs=98.9

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc-ccCCccch-------------hh---------------
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA-WLGGQLFS-------------AM---------------  140 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~-~~~g~~~~-------------~~---------------  140 (356)
                      ++||||||+|.||++||+.++ . |.+|+||||....++++ +.+|.+..             ..               
T Consensus         3 ~~DVlVVG~G~AGl~AAl~a~-~-g~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~~   80 (510)
T PRK08071          3 SADVIIIGSGIAALTVAKELC-H-EYNVIIITKKTKRNSNSHLAQGGIAAAVATYDSPNDHFEDTLVAGCHHNNERAVRY   80 (510)
T ss_pred             ccCEEEECccHHHHHHHHHhh-c-CCCEEEEeccCCCCCCchhcCccceecccCCCCHHHHHHHHHHhccCcCCHHHHHH
Confidence            589999999999999999996 4 78999999998766655 33332210             00               


Q ss_pred             hcc--chHHHHHHHhCCCccccC--Ce----------EEEe------chHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEe
Q 018414          141 VVR--KPAHIFLDELGIDYDEQD--NY----------VVIK------HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK  200 (356)
Q Consensus       141 ~~~--~~~~~~l~~~G~~~~~~~--~~----------~~~~------~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~  200 (356)
                      +.+  ...++||.++|++|+...  .+          +...      ....+.+.|.+.+.  .|+++++++.+++++.+
T Consensus        81 ~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~gd~~g~~i~~~L~~~~~--~gV~i~~~~~v~~Li~~  158 (510)
T PRK08071         81 LVEEGPKEIQELIENGMPFDGDETGPLHLGKEGAHRKRRILHAGGDATGKNLLEHLLQELV--PHVTVVEQEMVIDLIIE  158 (510)
T ss_pred             HHHHHHHHHHHHHHcCCccccCCCCceeeccCcCccCCeEEecCCCCcHHHHHHHHHHHHh--cCCEEEECeEhhheeec
Confidence            001  134678999999997431  11          1111      12456677777664  58999999999999988


Q ss_pred             CCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          201 GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       201 ~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      +++|.|+.+.+      .    +++...++||.||+|||+++.
T Consensus       159 ~g~v~Gv~~~~------~----~g~~~~i~Ak~VVlATGG~~~  191 (510)
T PRK08071        159 NGRCIGVLTKD------S----EGKLKRYYADYVVLASGGCGG  191 (510)
T ss_pred             CCEEEEEEEEE------C----CCcEEEEEcCeEEEecCCCcc
Confidence            88999987742      0    123457899999999999874

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.45  E-value=1.2e-12  Score=133.11  Aligned_cols=43  Identities=28%  Similarity=0.502  Sum_probs=38.2

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccC
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLG  133 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~  133 (356)
                      .+|||||||+| +|++||+.+++. |.+|+||||....||++...
T Consensus        15 ~e~DvvvvG~G-~G~~aA~~a~~~-G~~v~v~Ek~~~~GG~~~~~   57 (564)
T PRK12845         15 TTVDLLVVGSG-TGMAAALAAHEL-GLSVLIVEKSSYVGGSTARS   57 (564)
T ss_pred             ceeCEEEECCc-HHHHHHHHHHHC-CCcEEEEecCCCCcCcccCc
Confidence            36999999999 899999999999 99999999998888876433

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=99.45  E-value=1.4e-12  Score=131.48  Aligned_cols=141  Identities=24%  Similarity=0.416  Sum_probs=96.3

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcccc-CC-ccc-----------------------hhh----
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWL-GG-QLF-----------------------SAM----  140 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~-~g-~~~-----------------------~~~----  140 (356)
                      ++||||||+| +|++||++|++. |.+|+||||....||.+.. ++ .+.                       ...    
T Consensus         7 ~~DVvVVG~G-aGl~aA~~aa~~-G~~V~vlEk~~~~Gg~t~~~~g~g~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   84 (513)
T PRK12837          7 EVDVLVAGSG-GGVAGAYTAARE-GLSVALVEATDKFGGTTAYSGGGGMWFPCNPVLRRAGTDDTIEDALEYYHAVVGDR   84 (513)
T ss_pred             ccCEEEECch-HHHHHHHHHHHC-CCcEEEEecCCCCCcceecCCCceeccCCChhhhhcCcchHHHHHHHHHHHHhccc
Confidence            6899999999 999999999999 9999999999876654421 11 110                       000    


Q ss_pred             --------hcc--chHHHHHHH-hCCCccccC--------------C-eEEEe---------------------------
Q 018414          141 --------VVR--KPAHIFLDE-LGIDYDEQD--------------N-YVVIK---------------------------  167 (356)
Q Consensus       141 --------~~~--~~~~~~l~~-~G~~~~~~~--------------~-~~~~~---------------------------  167 (356)
                              +.+  ...++||++ .|++|....              . .....                           
T Consensus        85 ~~~~l~~~~~~~s~~~i~wl~~~~Gv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (513)
T PRK12837         85 TPRDLQETYVRGGAPLIEYLEQDEHFEFAELPWPDYFGKAPKARADGQRHIVPKPLPAAALGELREQIRGPLDTERLGAP  164 (513)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCceeeecCCCCcCCCCCCcccCCcceeecCCCChHHhchhHHhccCccchhhhccC
Confidence                    000  123578876 588774310              0 00000                           


Q ss_pred             ------chHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcC-EEEEcCCC
Q 018414          168 ------HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAK-VVVSSCGH  240 (356)
Q Consensus       168 ------~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak-~VI~AtGg  240 (356)
                            ....+...+++.+.++.|+++++++++++|+.++++|.||....           +++..+++|+ .||+|||+
T Consensus       165 ~~~~~~~G~~l~~~l~~~~~~~~gv~i~~~t~~~~Li~~~g~v~Gv~~~~-----------~g~~~~i~A~k~VIlAtGG  233 (513)
T PRK12837        165 PPDYLVGGRALIGRFLAALARFPNARLRLNTPLVELVVEDGRVVGAVVER-----------GGERRRVRARRGVLLAAGG  233 (513)
T ss_pred             CCCcccccHHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCEEEEEEEEE-----------CCcEEEEEeCceEEEeCCC
Confidence                  01245566677666567999999999999999889999997641           1234679996 79999999


Q ss_pred             CCC
Q 018414          241 DGP  243 (356)
Q Consensus       241 ~~~  243 (356)
                      ++.
T Consensus       234 ~~~  236 (513)
T PRK12837        234 FEQ  236 (513)
T ss_pred             ccC
Confidence            864

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.44  E-value=1.6e-12  Score=132.33  Aligned_cols=141  Identities=28%  Similarity=0.442  Sum_probs=98.5

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc-ccCCccc-----------------------hhhh----
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA-WLGGQLF-----------------------SAMV----  141 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~-~~~g~~~-----------------------~~~~----  141 (356)
                      ++||+|||+|.+|+++|+.|++. |++|+||||....||++ +.+|++.                       ....    
T Consensus         6 ~~DvvIiG~G~aGl~aA~~~a~~-G~~v~liEk~~~~gG~~~~s~g~~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~   84 (557)
T PRK12844          6 TYDVVVVGSGGGGMCAALAAADS-GLEPLIVEKQDKVGGSTAMSGGVLWLPNNPLMKAAGVPDSHEDALAYLDAVVGDQG   84 (557)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCCCceeceecceeecCChHHHHHcCcHHHHHHHHHHHHHHhcccc
Confidence            68999999999999999999999 99999999987777654 2222210                       0000    


Q ss_pred             -----------c-c-chHHHHHHHhCCCccccC---CeE----------EE-----------------------------
Q 018414          142 -----------V-R-KPAHIFLDELGIDYDEQD---NYV----------VI-----------------------------  166 (356)
Q Consensus       142 -----------~-~-~~~~~~l~~~G~~~~~~~---~~~----------~~-----------------------------  166 (356)
                                 . + ...++||+++|++|....   .|+          ..                             
T Consensus        85 ~~~~~~~~~~~~~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (557)
T PRK12844         85 PASSPERREAYLRAGPAMVSFLEHQGMRFARCEGWSDYYPDLPGGEARGRSLEAKPFDARKLGPWFDRLNPPMATPPGTV  164 (557)
T ss_pred             cCCCHHHHHHHHhhhHHHHHHHHhcCceeEeCCCCCCCCCCCCCCcCCCceecCCCCChhHhhHHHHhhcCccccccccc
Confidence                       0 0 134689999999885321   000          00                             


Q ss_pred             ----------------------------------------echHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEE
Q 018414          167 ----------------------------------------KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGG  206 (356)
Q Consensus       167 ----------------------------------------~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g  206 (356)
                                                              .....+...|.+.+. +.|++++++++|++|+.++++|.|
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~G~~l~~~l~~~~~-~~gv~i~~~~~v~~Li~~~g~v~G  243 (557)
T PRK12844        165 VMTDEYKWLQLIKRTPRGMRTAARVGARTLAARIRGQKLLTNGAALIGRMLEAAL-AAGVPLWTNTPLTELIVEDGRVVG  243 (557)
T ss_pred             ccHHHHHHHHhhccCchhHHHHHHHHHHHHHHhccCCCcccCcHHHHHHHHHHHH-hCCCEEEeCCEEEEEEEeCCEEEE
Confidence                                                    001234455556665 679999999999999999999999


Q ss_pred             EEEcceeeecccCCCCCCCCeEEEcC-EEEEcCCCCCC
Q 018414          207 VVTNWALVSMNHDTQSCMDPNVMEAK-VVVSSCGHDGP  243 (356)
Q Consensus       207 v~~~~~~~~~~~~~~~~g~~~~i~Ak-~VI~AtGg~~~  243 (356)
                      |.+..           +++...+.|+ .||+|||+++.
T Consensus       244 v~~~~-----------~g~~~~i~A~~aVIlAtGG~~~  270 (557)
T PRK12844        244 VVVVR-----------DGREVLIRARRGVLLASGGFGH  270 (557)
T ss_pred             EEEEE-----------CCeEEEEEecceEEEecCCccC
Confidence            88741           1234678895 79999999875

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=99.44  E-value=3.8e-12  Score=118.48  Aligned_cols=137  Identities=22%  Similarity=0.336  Sum_probs=87.3

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhcc--chHHHHHHHh-CC----------Cc
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVR--KPAHIFLDEL-GI----------DY  157 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~--~~~~~~l~~~-G~----------~~  157 (356)
                      |||+|||||++|+++|+.|++. |.+|+|+||...++. .+.+..+....+..  .......... ..          .+
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~-g~~v~vie~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADK-GLRVLLLEKKSFPRY-KPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEI   78 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCCCCc-ccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEe
Confidence            6999999999999999999999 999999999976653 22222221111100  0000000000 00          00


Q ss_pred             cccCCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEc
Q 018414          158 DEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSS  237 (356)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~A  237 (356)
                      .....+....+...+.+.|.+.+. +.|++++++++++++..+++.+... ...             +..++++|+||+|
T Consensus        79 ~~~~~~~~~i~r~~l~~~l~~~~~-~~gv~~~~~~~v~~~~~~~~~~~~~-~~~-------------~~~~~~a~~vv~a  143 (295)
T TIGR02032        79 PIETELAYVIDRDAFDEQLAERAQ-EAGAELRLGTTVLDVEIHDDRVVVI-VRG-------------GEGTVTAKIVIGA  143 (295)
T ss_pred             ccCCCcEEEEEHHHHHHHHHHHHH-HcCCEEEeCcEEeeEEEeCCEEEEE-EcC-------------ccEEEEeCEEEEC
Confidence            001122233455677788888876 6799999999999998887765322 211             1367999999999


Q ss_pred             CCCCCCC
Q 018414          238 CGHDGPF  244 (356)
Q Consensus       238 tGg~~~~  244 (356)
                      +|.++.+
T Consensus       144 ~G~~s~~  150 (295)
T TIGR02032       144 DGSRSIV  150 (295)
T ss_pred             CCcchHH
Confidence            9987643

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=99.43  E-value=2.8e-12  Score=122.27  Aligned_cols=134  Identities=27%  Similarity=0.338  Sum_probs=87.6

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhh--------h----------------------
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAM--------V----------------------  141 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~--------~----------------------  141 (356)
                      ||+|||||++|+++|++|+++ |++|+|||++...++.+...+.++...        .                      
T Consensus         1 DvvIIGaGi~G~~~A~~La~~-G~~V~l~e~~~~~~~aS~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~   79 (358)
T PF01266_consen    1 DVVIIGAGIAGLSTAYELARR-GHSVTLLERGDIGSGASGRSGGLVRPGISSYPDPQYARLARESVEFWRELAEEYGIPV   79 (358)
T ss_dssp             EEEEECTSHHHHHHHHHHHHT-TSEEEEEESSSTTSSGGGSSSEEEECSGSHHSSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHC-CCeEEEEeeccccccccccccccccccccccccccccchhhhhccchhhhhhhcCccc
Confidence            899999999999999999999 999999999954443332221111000        0                      


Q ss_pred             ----------ccc-h-------HHHHHHHhCCCcccc-------------CC----e----EEEechHHHHHHHHHHHHc
Q 018414          142 ----------VRK-P-------AHIFLDELGIDYDEQ-------------DN----Y----VVIKHAALFTSTIMSKLLA  182 (356)
Q Consensus       142 ----------~~~-~-------~~~~l~~~G~~~~~~-------------~~----~----~~~~~~~~~~~~l~~~~~~  182 (356)
                                ... .       ..+.++..++++...             ..    +    ....+...+.+.|.+.+. 
T Consensus        80 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~i~~~~l~~~l~~~~~-  158 (358)
T PF01266_consen   80 GFRPCGSLYLAEDEEDAESLERLLDRLRRNGIPYELLSPEELRELFPFLNPRIEGGVFFPEGGVIDPRRLIQALAAEAQ-  158 (358)
T ss_dssp             EEEECEEEEEESSHHHHHHHHHHHHHHHHTTTTEEEEEHHHHHHHSTTSSTTTEEEEEETTEEEEEHHHHHHHHHHHHH-
T ss_pred             ccccccccccccchhhhhhccccccccccccccccccchhhhhhhhcccccchhhhhcccccccccccchhhhhHHHHH-
Confidence                      000 0       012223344421100             00    0    012356788889888887 


Q ss_pred             CCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          183 RPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       183 ~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      +.|++++++++|++|..+++++.+|.+.+               ..++||.||+|+|.++
T Consensus       159 ~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~---------------g~i~ad~vV~a~G~~s  203 (358)
T PF01266_consen  159 RAGVEIRTGTEVTSIDVDGGRVTGVRTSD---------------GEIRADRVVLAAGAWS  203 (358)
T ss_dssp             HTT-EEEESEEEEEEEEETTEEEEEEETT---------------EEEEECEEEE--GGGH
T ss_pred             Hhhhhccccccccchhhcccccccccccc---------------cccccceeEecccccc
Confidence            56999999999999999999999998863               4499999999999543

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=99.43  E-value=1.9e-12  Score=132.66  Aligned_cols=142  Identities=18%  Similarity=0.201  Sum_probs=95.0

Q ss_pred             EEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCC--ccccCCcc------------ch-------------------h
Q 018414           93 VVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG--GAWLGGQL------------FS-------------------A  139 (356)
Q Consensus        93 VvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg--~~~~~g~~------------~~-------------------~  139 (356)
                      |||||+|.||++||+.+++. |.+|+||||...+++  +.+..|.+            +.                   .
T Consensus         1 VlVVG~G~AGl~AAl~Aae~-G~~VilleK~~~~~~g~s~~a~Ggi~a~~~~~~~~ds~e~~~~d~~~~g~~~~d~~lv~   79 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAEL-GYHVKLFSYVDAPRRAHSIAAQGGINGAVNTKGDGDSPWRHFDDTVKGGDFRARESPVK   79 (603)
T ss_pred             CEEECccHHHHHHHHHHHHc-CCCEEEEEecCCCCCccchhhhhhhhhhcccCCCCCCHHHHHHHHHHhcCCCCCHHHHH
Confidence            69999999999999999999 999999999874432  22222210            00                   0


Q ss_pred             hhc--cchHHHHHHHhCCCccccCC--eE--E--------E-----echHHHHHHHHHHHHc---CCCcEEEcCeEEEEE
Q 018414          140 MVV--RKPAHIFLDELGIDYDEQDN--YV--V--------I-----KHAALFTSTIMSKLLA---RPNVKLFNAVAAEDL  197 (356)
Q Consensus       140 ~~~--~~~~~~~l~~~G~~~~~~~~--~~--~--------~-----~~~~~~~~~l~~~~~~---~~gv~i~~~~~v~~i  197 (356)
                      .+.  ....++||+++|++|+...+  +.  .        .     .....+...|.+.+.+   +.||++++++.+++|
T Consensus        80 ~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~tG~~i~~~L~~~~~~~~~~~gV~i~~~t~v~~L  159 (603)
T TIGR01811        80 RLAVASPEIIDLMDAMGVPFAREYGGLLDTRSFGGVQVSRTAYARGQTGQQLLLALDSALRRQIAAGLVEKYEGWEMLDI  159 (603)
T ss_pred             HHHHHHHHHHHHHHHcCCEEEecCCCccccccccCcccCcceecCCCChhHHHHHHHHHHHhhhccCCcEEEeCcEEEEE
Confidence            000  11356899999999865321  00  0        0     1234555566555532   358999999999999


Q ss_pred             EEeC-CeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414          198 IVKG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF  244 (356)
Q Consensus       198 ~~~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~  244 (356)
                      +.++ ++|.||.+.+      ..   +++...+.||.||+||||++..
T Consensus       160 i~dd~grV~GV~~~~------~~---~g~~~~i~AkaVVLATGG~g~~  198 (603)
T TIGR01811       160 IVVDGNRARGIIARN------LV---TGEIETHSADAVILATGGYGNV  198 (603)
T ss_pred             EEcCCCEEEEEEEEE------CC---CCcEEEEEcCEEEECCCCCcCc
Confidence            9864 5899998742      11   1234679999999999998743

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.43  E-value=2e-12  Score=132.21  Aligned_cols=40  Identities=30%  Similarity=0.609  Sum_probs=36.6

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG  129 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~  129 (356)
                      .++||||||+|.+|++||+.++++ |++|+||||....||.
T Consensus        10 ~~~DVvVVG~G~AGl~AA~~aae~-G~~VivlEk~~~~gG~   49 (584)
T PRK12835         10 REVDVLVVGSGGGGMTAALTAAAR-GLDTLVVEKSAHFGGS   49 (584)
T ss_pred             CcCCEEEECccHHHHHHHHHHHHC-CCcEEEEEcCCCCCch
Confidence            368999999999999999999999 9999999999877764

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=99.43  E-value=2.1e-12  Score=122.96  Aligned_cols=135  Identities=23%  Similarity=0.297  Sum_probs=85.7

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCC---------c---
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID---------Y---  157 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~---------~---  157 (356)
                      +|||+|||||++|+++|+.|+++ |++|+|+||...+.....  +.     .......+.|+++|+.         .   
T Consensus         1 ~~dV~IvGaG~aGl~~A~~L~~~-G~~v~i~E~~~~~~~~~~--~~-----~l~~~~~~~l~~lgl~~~~~~~~~~~~~~   72 (356)
T PF01494_consen    1 EYDVAIVGAGPAGLAAALALARA-GIDVTIIERRPDPRPKGR--GI-----GLSPNSLRILQRLGLLDEILARGSPHEVM   72 (356)
T ss_dssp             EEEEEEE--SHHHHHHHHHHHHT-TCEEEEEESSSSCCCSSS--SE-----EEEHHHHHHHHHTTEHHHHHHHSEEECEE
T ss_pred             CceEEEECCCHHHHHHHHHHHhc-ccccccchhccccccccc--cc-----ccccccccccccccchhhhhhhcccccce
Confidence            38999999999999999999999 999999999876532211  10     1111222333333321         0   


Q ss_pred             -----cc---------------------cCCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcc
Q 018414          158 -----DE---------------------QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNW  211 (356)
Q Consensus       158 -----~~---------------------~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~  211 (356)
                           ..                     ........+...+.+.|++.+. +.+++++++++++++..+++.+..+....
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~gv~i~~~~~v~~~~~d~~~~~~~~~~~  151 (356)
T PF01494_consen   73 RIFFYDGISDSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAE-ERGVDIRFGTRVVSIEQDDDGVTVVVRDG  151 (356)
T ss_dssp             EEEEEEETTTSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHH-HHTEEEEESEEEEEEEEETTEEEEEEEET
T ss_pred             eeEeecccCCccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhh-hhhhhheeeeecccccccccccccccccc
Confidence                 00                     0011122344677778888876 45799999999999998888766554421


Q ss_pred             eeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          212 ALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       212 ~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                             .   +++..+++||.||.|+|..|.
T Consensus       152 -------~---~g~~~~i~adlvVgADG~~S~  173 (356)
T PF01494_consen  152 -------E---DGEEETIEADLVVGADGAHSK  173 (356)
T ss_dssp             -------C---TCEEEEEEESEEEE-SGTT-H
T ss_pred             -------c---CCceeEEEEeeeecccCcccc
Confidence                   1   123458999999999997763

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.43  E-value=2.1e-12  Score=138.05  Aligned_cols=146  Identities=20%  Similarity=0.340  Sum_probs=98.8

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccC--Ccc--------------chhh------------
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLG--GQL--------------FSAM------------  140 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~--g~~--------------~~~~------------  140 (356)
                      .++||+|||+|.||++||+.+++. |.+|+||||.....++.+..  +.+              +...            
T Consensus        12 ~~~DVlVVG~G~AGl~AAl~Aa~~-G~~V~lleK~~~~~sg~~~~g~~gi~~~~~~~~ds~e~~~~Dt~~~g~gl~d~~~   90 (897)
T PRK13800         12 LDCDVLVIGGGTAGTMAALTAAEH-GANVLLLEKAHVRHSGALAMGMDGVNNAVIPGKAEPEDYVAEITRANDGIVNQRT   90 (897)
T ss_pred             eecCEEEECcCHHHHHHHHHHHHC-CCeEEEEecccccCCCcccCCchhhhcccCCCccCHHHHHHHHHhhcCCCCCHHH
Confidence            368999999999999999999999 99999999986422111110  000              0000            


Q ss_pred             ----hcc-chHHHHHHHhCCCccccCC--eEE--E----------echHHHHHHHHHHHHcC---CCcEEEcCeEEEEEE
Q 018414          141 ----VVR-KPAHIFLDELGIDYDEQDN--YVV--I----------KHAALFTSTIMSKLLAR---PNVKLFNAVAAEDLI  198 (356)
Q Consensus       141 ----~~~-~~~~~~l~~~G~~~~~~~~--~~~--~----------~~~~~~~~~l~~~~~~~---~gv~i~~~~~v~~i~  198 (356)
                          +.+ ...++||+++|++|+...+  +..  +          .....+...|++.+.+.   .+++++.++.+++++
T Consensus        91 v~~~~~~a~~~i~~L~~~Gv~f~~~~~G~~~~~~~~~~~~~~~~~~tG~~i~~~L~~~l~~~~~~~~i~~~~~~~~~~Li  170 (897)
T PRK13800         91 VYQTATRGFAMVQRLERYGVKFEKDEHGEYAVRRVHRSGSYVLPMPEGKDVKKALYRVLRQRSMRERIRIENRLMPVRVL  170 (897)
T ss_pred             HHHHHHhHHHHHHHHHHcCCceeeCCCCCEeeeeeccCCCccccCCCchhHHHHHHHHHHHhhhcCCcEEEeceeeEEEE
Confidence                000 1346899999999976422  110  0          02344555666665432   478999999899999


Q ss_pred             EeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414          199 VKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF  244 (356)
Q Consensus       199 ~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~  244 (356)
                      .++++|.|+...+      ..   +++...+.||.||+||||++..
T Consensus       171 ~~~g~v~Gv~~~~------~~---~g~~~~i~AkaVILATGG~g~~  207 (897)
T PRK13800        171 TEGGRAVGAAALN------TR---TGEFVTVGAKAVILATGPCGRL  207 (897)
T ss_pred             eeCCEEEEEEEEe------cC---CCcEEEEECCEEEECCCccccC
Confidence            8889999987632      11   2245689999999999998765

>PRK08013 oxidoreductase; Provisional

Probab=99.43  E-value=4.1e-12  Score=124.34  Aligned_cols=138  Identities=20%  Similarity=0.310  Sum_probs=88.0

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCC-------------
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID-------------  156 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~-------------  156 (356)
                      ++||+|||||++|+++|+.|+++ |++|+|+||.+.+..... .+.............+.|+++|+.             
T Consensus         3 ~~dV~IvGaGpaGl~~A~~La~~-G~~v~viE~~~~~~~~~g-~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~   80 (400)
T PRK08013          3 SVDVVIAGGGMVGLAVACGLQGS-GLRVAVLEQRVPEPLAAD-APPALRVSAINAASEKLLTRLGVWQDILARRASCYHG   80 (400)
T ss_pred             cCCEEEECcCHHHHHHHHHHhhC-CCEEEEEeCCCCcccccC-CCCCceeeecchhHHHHHHHcCCchhhhhhcCccccE
Confidence            48999999999999999999999 999999999875321000 000000011122223334333321             


Q ss_pred             -------------cccc----CCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccC
Q 018414          157 -------------YDEQ----DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHD  219 (356)
Q Consensus       157 -------------~~~~----~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~  219 (356)
                                   +...    ..+....+...+.+.|++.+.+..|++++++++++++..+++.+. +...         
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~-v~~~---------  150 (400)
T PRK08013         81 MEVWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAF-LTLK---------  150 (400)
T ss_pred             EEEEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEE-EEEc---------
Confidence                         0000    001123345677788888887556899999999999987766543 3332         


Q ss_pred             CCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414          220 TQSCMDPNVMEAKVVVSSCGHDGPF  244 (356)
Q Consensus       220 ~~~~g~~~~i~Ak~VI~AtGg~~~~  244 (356)
                           ++.+++||+||.|+|.+|.+
T Consensus       151 -----~g~~i~a~lvVgADG~~S~v  170 (400)
T PRK08013        151 -----DGSMLTARLVVGADGANSWL  170 (400)
T ss_pred             -----CCCEEEeeEEEEeCCCCcHH
Confidence                 13679999999999977643

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=99.42  E-value=8.7e-13  Score=129.78  Aligned_cols=205  Identities=19%  Similarity=0.242  Sum_probs=123.4

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHH-HHHH----HhCCCcccc-CCe
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAH-IFLD----ELGIDYDEQ-DNY  163 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~-~~l~----~~G~~~~~~-~~~  163 (356)
                      +||++|||+|++|..+|++|++. |.+|+++|+....||+|.+.||++++.+.+.... +.+.    .+|+..... -+|
T Consensus         4 ~yDvvVIG~GpaG~~aA~raa~~-G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~id~   82 (454)
T COG1249           4 EYDVVVIGAGPAGYVAAIRAAQL-GLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKIDF   82 (454)
T ss_pred             cccEEEECCCHHHHHHHHHHHhC-CCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCcCH
Confidence            59999999999999999999999 9999999999889999999999999988876433 4444    355554432 122


Q ss_pred             EEE-echHHH---HHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCC
Q 018414          164 VVI-KHAALF---TSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG  239 (356)
Q Consensus       164 ~~~-~~~~~~---~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtG  239 (356)
                      ... .+....   ...-.+.+.+..||+++.++.   -..+++.+   .+..       .     +..+++++++|+|||
T Consensus        83 ~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a---~f~~~~~v---~V~~-------~-----~~~~~~a~~iiIATG  144 (454)
T COG1249          83 EKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEA---RFVDPHTV---EVTG-------E-----DKETITADNIIIATG  144 (454)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEE---EECCCCEE---EEcC-------C-----CceEEEeCEEEEcCC
Confidence            111 111111   222234455567999998852   11123332   2210       0     247899999999999


Q ss_pred             CCCCCC----CccchhhhccCcccccccccccccccccceee----eccccccCceeEeceEEEEecCCcccCCccceee
Q 018414          240 HDGPFG----ATGVKRLKSIGMIEEVPGMKALDMNSAEDAIV----RLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMM  311 (356)
Q Consensus       240 g~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~e~~~g~~~~~~~~~~~~g~~~~~~~~g~~l  311 (356)
                      +.....    ..+.+.+.+.+.       ..+ ...+..+++    +.+-|+..=+.-.|.++++++...++.|.+.   
T Consensus       145 S~p~~~~~~~~~~~~~~~s~~~-------l~~-~~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~~D---  213 (454)
T COG1249         145 SRPRIPPGPGIDGARILDSSDA-------LFL-LELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPGED---  213 (454)
T ss_pred             CCCcCCCCCCCCCCeEEechhh-------ccc-ccCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCcCC---
Confidence            775321    111111111110       001 122233332    2344555556677889999988777777654   


Q ss_pred             eehHHHHHHHHHHhCC
Q 018414          312 ISGQKAAHLALKSLGQ  327 (356)
Q Consensus       312 ~sG~~~~~l~l~~~~~  327 (356)
                         +.+.+.+.+.|.+
T Consensus       214 ---~ei~~~~~~~l~~  226 (454)
T COG1249         214 ---PEISKELTKQLEK  226 (454)
T ss_pred             ---HHHHHHHHHHHHh
Confidence               4444555555533

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=99.41  E-value=6.6e-12  Score=122.43  Aligned_cols=137  Identities=21%  Similarity=0.311  Sum_probs=87.0

Q ss_pred             CCcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCC----------Cc
Q 018414           88 YADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI----------DY  157 (356)
Q Consensus        88 ~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~----------~~  157 (356)
                      ...+||+|||||++|+++|+.|+++ |++|+||||...+.....  +.............+.|+++|+          ++
T Consensus         4 ~~~~dV~IvGaG~aGl~~A~~La~~-G~~v~liE~~~~~~~~~~--~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~   80 (392)
T PRK08773          4 RSRRDAVIVGGGVVGAACALALADA-GLSVALVEGREPPRWQAD--QPDLRVYAFAADNAALLDRLGVWPAVRAARAQPY   80 (392)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcC-CCEEEEEeCCCCcccccC--CCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcc
Confidence            3468999999999999999999999 999999999864321100  0000000111122233333332          11


Q ss_pred             cc--------------------cCCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecc
Q 018414          158 DE--------------------QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMN  217 (356)
Q Consensus       158 ~~--------------------~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~  217 (356)
                      ..                    ...+.+..+...+.+.|++.+. +.|++++++++|+++..+++.+. +...+      
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~-~~gv~i~~~~~v~~i~~~~~~v~-v~~~~------  152 (392)
T PRK08773         81 RRMRVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALH-AAGVQLHCPARVVALEQDADRVR-LRLDD------  152 (392)
T ss_pred             cEEEEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHH-hCCCEEEcCCeEEEEEecCCeEE-EEECC------
Confidence            00                    0011122334667778887776 56999999999999988776554 43321      


Q ss_pred             cCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          218 HDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       218 ~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                              ..++++|.||.|+|.++.
T Consensus       153 --------g~~~~a~~vV~AdG~~S~  170 (392)
T PRK08773        153 --------GRRLEAALAIAADGAAST  170 (392)
T ss_pred             --------CCEEEeCEEEEecCCCch
Confidence                    357899999999998764

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=99.41  E-value=1.2e-12  Score=132.13  Aligned_cols=144  Identities=25%  Similarity=0.375  Sum_probs=102.3

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc-ccCCcc--------------ch---------------
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA-WLGGQL--------------FS---------------  138 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~-~~~g~~--------------~~---------------  138 (356)
                      .++||||||+|.|||.||+.+++. |++|+|+||....++.+ +..|.+              +.               
T Consensus         5 ~~~DvvVIG~G~AGl~AAi~aa~~-g~~V~l~~K~~~~rg~t~~a~gG~~a~~~~~~~~~~ds~e~~~~dtvkg~d~l~d   83 (562)
T COG1053           5 HEFDVVVIGGGGAGLRAAIEAAEA-GLKVALLSKAPPKRGHTVAAQGGINAALGNTVDVEGDSPELHFYDTVKGGDGLGD   83 (562)
T ss_pred             ccCCEEEECCcHHHHHHHHHHHhc-CCcEEEEEccccCCCchhhhcccccccccCcccccCCCHHHHHHHHHhccCCcCC
Confidence            369999999999999999999999 99999999987655322 111100              00               


Q ss_pred             -----hhhcc-chHHHHHHHhCCCccccCCe----------------EEEe-chHHHHHHHHHHHHcCCCcEEEcCeEEE
Q 018414          139 -----AMVVR-KPAHIFLDELGIDYDEQDNY----------------VVIK-HAALFTSTIMSKLLARPNVKLFNAVAAE  195 (356)
Q Consensus       139 -----~~~~~-~~~~~~l~~~G~~~~~~~~~----------------~~~~-~~~~~~~~l~~~~~~~~gv~i~~~~~v~  195 (356)
                           .++.. ...+.+|+++|++|.+....                +... ....+...|++++.+..+++++.++.+.
T Consensus        84 qd~i~~~~~~ap~~v~~Le~~G~~f~r~~~G~~~~r~fgg~~~~rt~~~~~~tG~~ll~~L~~~~~~~~~~~~~~~~~~~  163 (562)
T COG1053          84 QDAVEAFADEAPEAVDELEKWGVPFSRTEDGRIYQRRFGGHSKPRTCFAADKTGHELLHTLYEQLLKFSGIEIFDEYFVL  163 (562)
T ss_pred             HHHHHHHHHhhHHHHHHHHHhCCCcccCCCccccccccCCcCCCcceecCCCCcHHHHHHHHHHHHHhhcchhhhhhhhh
Confidence                 00111 13578999999998665321                1111 1356778888888866788999999999


Q ss_pred             EEEEeCCe-EEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          196 DLIVKGGR-VGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       196 ~i~~~~~~-v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      +++.++++ |.|+...+      ..   +++...+++|.||+||||.+
T Consensus       164 ~l~~~~~~~v~Gvv~~~------~~---~g~~~~~~akavilaTGG~g  202 (562)
T COG1053         164 DLLVDDGGGVAGVVARD------LR---TGELYVFRAKAVILATGGAG  202 (562)
T ss_pred             hheecCCCcEEEEEEEE------ec---CCcEEEEecCcEEEccCCce
Confidence            99987654 88887643      12   23467889999999999988

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=99.40  E-value=6.8e-12  Score=122.30  Aligned_cols=132  Identities=23%  Similarity=0.355  Sum_probs=94.4

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC-CCCCccccCCccchhhhccchHHHHHHHhCC-Cc-c--------
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV-SPGGGAWLGGQLFSAMVVRKPAHIFLDELGI-DY-D--------  158 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~-~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~-~~-~--------  158 (356)
                      .+||+|||||++|+++|+.|++. |++|+|||+.+ ..-.    .+   ..........+.|+++|+ +- .        
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~-G~~V~l~E~~~~~~~~----~~---r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~   73 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARA-GLDVTLLERAPRELLE----RG---RGIALSPNALRALERLGLWDRLEALGVPPLH   73 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhC-CCcEEEEccCcccccc----Cc---eeeeecHhHHHHHHHcCChhhhhhccCCcee
Confidence            47999999999999999999999 99999999982 1110    00   112233445566666665 20 0        


Q ss_pred             -----cc--------------CCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccC
Q 018414          159 -----EQ--------------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHD  219 (356)
Q Consensus       159 -----~~--------------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~  219 (356)
                           ..              ..+....+...+.+.|++.+.+..+++++++++|+.+..+++.+. +...       . 
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~-v~l~-------~-  144 (387)
T COG0654          74 VMVVDDGGRRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVT-VTLS-------F-  144 (387)
T ss_pred             eEEEecCCceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceE-EEEc-------C-
Confidence                 00              111223455788899999998777799999999999999988777 5543       0 


Q ss_pred             CCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          220 TQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       220 ~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                           ++.+++||.||.|+|.+|.
T Consensus       145 -----dG~~~~a~llVgADG~~S~  163 (387)
T COG0654         145 -----DGETLDADLLVGADGANSA  163 (387)
T ss_pred             -----CCcEEecCEEEECCCCchH
Confidence                 1348999999999997763

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.39  E-value=1.7e-12  Score=119.71  Aligned_cols=138  Identities=25%  Similarity=0.294  Sum_probs=101.5

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchH----HHHHHHhCCCccccC--C
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA----HIFLDELGIDYDEQD--N  162 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~----~~~l~~~G~~~~~~~--~  162 (356)
                      ++||.+|||||.+|+++|++++.. |.+|.|+|.....||+|.+.||.+.+.+++...    .+...++|++.....  +
T Consensus        19 k~fDylvIGgGSGGvasARrAa~~-GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~fd   97 (478)
T KOG0405|consen   19 KDFDYLVIGGGSGGVASARRAASH-GAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSFD   97 (478)
T ss_pred             cccceEEEcCCcchhHHhHHHHhc-CceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccCCc
Confidence            479999999999999999999999 999999999888999999999999998887632    344456888876543  3


Q ss_pred             eEEEechH-HH---HHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcC
Q 018414          163 YVVIKHAA-LF---TSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSC  238 (356)
Q Consensus       163 ~~~~~~~~-~~---~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~At  238 (356)
                      |..+.+.+ .+   .+.+|++.+.+.+|+++.++.   -..+++.+. |..++            +....|+|+++++|+
T Consensus        98 W~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a---~f~~~~~v~-V~~~d------------~~~~~Ytak~iLIAt  161 (478)
T KOG0405|consen   98 WKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRA---RFVSPGEVE-VEVND------------GTKIVYTAKHILIAT  161 (478)
T ss_pred             HHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeE---EEcCCCceE-EEecC------------CeeEEEecceEEEEe
Confidence            44433322 22   367788888888999998852   112334332 33322            124569999999999


Q ss_pred             CCCCC
Q 018414          239 GHDGP  243 (356)
Q Consensus       239 Gg~~~  243 (356)
                      |+...
T Consensus       162 Gg~p~  166 (478)
T KOG0405|consen  162 GGRPI  166 (478)
T ss_pred             CCccC
Confidence            97764

>PLN02546 glutathione reductase

Probab=99.39  E-value=4.8e-12  Score=128.33  Aligned_cols=131  Identities=18%  Similarity=0.247  Sum_probs=87.1

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEec---------cCCCCCccccCCccchhhhccchH-HHH---HHHhCC
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQ---------SVSPGGGAWLGGQLFSAMVVRKPA-HIF---LDELGI  155 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk---------~~~~Gg~~~~~g~~~~~~~~~~~~-~~~---l~~~G~  155 (356)
                      .+|||+|||+|++|..+|+.|++. |++|+|+|+         ...+||+|.+.||++.+.+..... .+.   ...+|+
T Consensus        78 ~~yDvvVIG~GpaG~~aA~~aa~~-G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~  156 (558)
T PLN02546         78 YDFDLFTIGAGSGGVRASRFASNF-GASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGW  156 (558)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCc
Confidence            369999999999999999999999 999999996         245899999999999998876532 233   344676


Q ss_pred             Ccccc--CCeEEEe-chH----HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeE
Q 018414          156 DYDEQ--DNYVVIK-HAA----LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNV  228 (356)
Q Consensus       156 ~~~~~--~~~~~~~-~~~----~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~  228 (356)
                      .+...  .+|.... +..    .+... ++...++.|++++.+ +++.+  +...   +.+.               +..
T Consensus       157 ~~~~~~~~d~~~~~~~k~~~~~~l~~~-~~~~l~~~gV~~i~G-~a~~v--d~~~---V~v~---------------G~~  214 (558)
T PLN02546        157 KYETEPKHDWNTLIANKNAELQRLTGI-YKNILKNAGVTLIEG-RGKIV--DPHT---VDVD---------------GKL  214 (558)
T ss_pred             ccCCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHhCCcEEEEe-EEEEc--cCCE---EEEC---------------CEE
Confidence            54211  1222111 111    22222 333344679999987 33333  2222   2221               256


Q ss_pred             EEcCEEEEcCCCCC
Q 018414          229 MEAKVVVSSCGHDG  242 (356)
Q Consensus       229 i~Ak~VI~AtGg~~  242 (356)
                      +.+|+||+|||+..
T Consensus       215 ~~~D~LVIATGs~p  228 (558)
T PLN02546        215 YTARNILIAVGGRP  228 (558)
T ss_pred             EECCEEEEeCCCCC
Confidence            89999999999765

>PRK07045 putative monooxygenase; Reviewed

Probab=99.39  E-value=1.2e-11  Score=120.57  Aligned_cols=134  Identities=20%  Similarity=0.304  Sum_probs=86.2

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCC--------------
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI--------------  155 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~--------------  155 (356)
                      .+||+|||||++|+++|+.|+++ |++|+|+||.+.+...  .++..     ......+.|+++|+              
T Consensus         5 ~~~V~IiGgGpaGl~~A~~L~~~-G~~v~v~E~~~~~~~~--~~~~~-----l~~~~~~~L~~lGl~~~~~~~~~~~~~~   76 (388)
T PRK07045          5 PVDVLINGSGIAGVALAHLLGAR-GHSVTVVERAARNRAQ--NGADL-----LKPSGIGVVRAMGLLDDVFAAGGLRRDA   76 (388)
T ss_pred             eeEEEEECCcHHHHHHHHHHHhc-CCcEEEEeCCCcccCC--Ccccc-----cCccHHHHHHHcCCHHHHHhcccccccc
Confidence            58999999999999999999999 9999999998754210  00000     00011111111111              


Q ss_pred             -------------Ccccc--CCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCe-EEEEEEcceeeecccC
Q 018414          156 -------------DYDEQ--DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGR-VGGVVTNWALVSMNHD  219 (356)
Q Consensus       156 -------------~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~-v~gv~~~~~~~~~~~~  219 (356)
                                   ++...  ..+....+...+.+.|++.+.+..|++++++++++++..+++. +..+...+        
T Consensus        77 ~~~~~~g~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~--------  148 (388)
T PRK07045         77 MRLYHDKELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSD--------  148 (388)
T ss_pred             eEEecCCcEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCC--------
Confidence                         00000  1122223445677778888766789999999999999886543 34555432        


Q ss_pred             CCCCCCCeEEEcCEEEEcCCCCCCCC
Q 018414          220 TQSCMDPNVMEAKVVVSSCGHDGPFG  245 (356)
Q Consensus       220 ~~~~g~~~~i~Ak~VI~AtGg~~~~~  245 (356)
                            +.++++|.||.|+|..+...
T Consensus       149 ------g~~~~~~~vIgADG~~S~vR  168 (388)
T PRK07045        149 ------GERVAPTVLVGADGARSMIR  168 (388)
T ss_pred             ------CCEEECCEEEECCCCChHHH
Confidence                  35799999999999876433

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=99.39  E-value=8.7e-12  Score=127.49  Aligned_cols=44  Identities=30%  Similarity=0.502  Sum_probs=38.7

Q ss_pred             ccCCcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414           86 ITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (356)
Q Consensus        86 ~~~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~  130 (356)
                      ....++||||||+|++|++||+.++++ |.+|+||||....||.+
T Consensus         5 ~~~~~~DVvVVG~G~aGl~AA~~aa~~-G~~v~llEk~~~~gG~~   48 (574)
T PRK12842          5 TNELTCDVLVIGSGAGGLSAAITARKL-GLDVVVLEKEPVFGGTT   48 (574)
T ss_pred             CcCCCCCEEEECcCHHHHHHHHHHHHc-CCeEEEEecCCCCCCcc
Confidence            334579999999999999999999999 99999999998777653

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=99.38  E-value=5.4e-12  Score=124.94  Aligned_cols=139  Identities=27%  Similarity=0.304  Sum_probs=93.6

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCC-CeEEEEeccCCCCCcccc-CCccc--------------------hhhh--------
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPN-IQIAIIEQSVSPGGGAWL-GGQLF--------------------SAMV--------  141 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G-~~V~llEk~~~~Gg~~~~-~g~~~--------------------~~~~--------  141 (356)
                      ||||||+|.+|++||+.|+++ | .+|+||||....||.+.. ++.+.                    ..++        
T Consensus         1 DVvVVG~G~AGl~AA~~aa~~-G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   79 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKA-GAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGIND   79 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHHc-CCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCC
Confidence            899999999999999999999 9 999999999877655422 22110                    0000        


Q ss_pred             --------cc-chHHHHHHHhCCCccccC-------CeEEE-------echHHHHHHHHHHHHcCCCcEEEcCeEEEEEE
Q 018414          142 --------VR-KPAHIFLDELGIDYDEQD-------NYVVI-------KHAALFTSTIMSKLLARPNVKLFNAVAAEDLI  198 (356)
Q Consensus       142 --------~~-~~~~~~l~~~G~~~~~~~-------~~~~~-------~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~  198 (356)
                              .. ...++||. .++.+....       .++..       .....+...|.+.+. +.|++++++++|++|+
T Consensus        80 ~~l~~~~~~~~~~~i~wl~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~-~~gv~i~~~~~v~~l~  157 (439)
T TIGR01813        80 PELVRILAEESADAVDWLQ-DGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAK-KEGIDTRLNSKVEDLI  157 (439)
T ss_pred             HHHHHHHHhccHHHHHHHH-hCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHH-HcCCEEEeCCEeeEeE
Confidence                    00 12356777 454432210       01100       123567778877776 6799999999999999


Q ss_pred             Ee-CCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          199 VK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       199 ~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      .+ ++++.++.+..      .    ++....+.+|.||+|+|+++.
T Consensus       158 ~~~~g~v~Gv~~~~------~----~g~~~~~~a~~VVlAtGg~~~  193 (439)
T TIGR01813       158 QDDQGTVVGVVVKG------K----GKGIYIKAAKAVVLATGGFGS  193 (439)
T ss_pred             ECCCCcEEEEEEEe------C----CCeEEEEecceEEEecCCCCC
Confidence            86 56888887642      0    112346889999999998875

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=99.38  E-value=5.8e-12  Score=127.07  Aligned_cols=137  Identities=29%  Similarity=0.374  Sum_probs=89.9

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC-CCCCcccc--CCccchhhhcc------chHHHHHHHhCCCcccc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV-SPGGGAWL--GGQLFSAMVVR------KPAHIFLDELGIDYDEQ  160 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~-~~Gg~~~~--~g~~~~~~~~~------~~~~~~l~~~G~~~~~~  160 (356)
                      +|||||||||+||+.||+.+++. |.+|+|||+.. .+|+-.++  -|.+....+.+      .....+++..++.+...
T Consensus         4 ~yDVIVVGGGpAG~eAA~~aAR~-G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~l   82 (618)
T PRK05192          4 EYDVIVVGGGHAGCEAALAAARM-GAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRML   82 (618)
T ss_pred             cceEEEECchHHHHHHHHHHHHc-CCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeec
Confidence            59999999999999999999999 99999999973 45532211  01111111111      11223444455544321


Q ss_pred             C----CeEE----EechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcC
Q 018414          161 D----NYVV----IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAK  232 (356)
Q Consensus       161 ~----~~~~----~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak  232 (356)
                      .    ....    ..+...+...+.+.+.+..|++++. ..|+++..+++++.+|.+.+              +..+.|+
T Consensus        83 n~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q-~~V~~Li~e~grV~GV~t~d--------------G~~I~Ak  147 (618)
T PRK05192         83 NTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLFQ-GEVEDLIVENGRVVGVVTQD--------------GLEFRAK  147 (618)
T ss_pred             ccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEE-eEEEEEEecCCEEEEEEECC--------------CCEEECC
Confidence            1    1100    1233556667777776667899864 57999998899999998853              3679999


Q ss_pred             EEEEcCCCCC
Q 018414          233 VVVSSCGHDG  242 (356)
Q Consensus       233 ~VI~AtGg~~  242 (356)
                      .||+|||.+.
T Consensus       148 ~VIlATGTFL  157 (618)
T PRK05192        148 AVVLTTGTFL  157 (618)
T ss_pred             EEEEeeCcch
Confidence            9999999653

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.38  E-value=1.3e-11  Score=121.17  Aligned_cols=137  Identities=18%  Similarity=0.277  Sum_probs=85.7

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCC---------Cc---
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI---------DY---  157 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~---------~~---  157 (356)
                      .+||+|||||++|+++|+.|++. |++|+|+||.+.+.......+.     .......+.|+++|+         ++   
T Consensus        18 ~~dV~IvGaG~aGl~~A~~L~~~-G~~v~v~E~~~~~~~~~~g~~~-----~l~~~~~~~L~~lGl~~~l~~~~~~~~~~   91 (415)
T PRK07364         18 TYDVAIVGGGIVGLTLAAALKDS-GLRIALIEAQPAEAAAAKGQAY-----ALSLLSARIFEGIGVWEKILPQIGKFRQI   91 (415)
T ss_pred             ccCEEEECcCHHHHHHHHHHhcC-CCEEEEEecCCccccCCCCcEE-----EechHHHHHHHHCChhhhhHhhcCCccEE
Confidence            58999999999999999999999 9999999998754211000000     011111222222222         11   


Q ss_pred             -------------ccc----CCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCC
Q 018414          158 -------------DEQ----DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDT  220 (356)
Q Consensus       158 -------------~~~----~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~  220 (356)
                                   ...    ..+........+.+.|++.+.+..+++++++++++++..+++.+. +...+         
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~-v~~~~---------  161 (415)
T PRK07364         92 RLSDADYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAAT-VTLEI---------  161 (415)
T ss_pred             EEEeCCCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeE-EEEcc---------
Confidence                         000    001111222456777878776556899999999999987766543 33321         


Q ss_pred             CCCCCCeEEEcCEEEEcCCCCCCC
Q 018414          221 QSCMDPNVMEAKVVVSSCGHDGPF  244 (356)
Q Consensus       221 ~~~g~~~~i~Ak~VI~AtGg~~~~  244 (356)
                        .++..+++||.||.|+|.++.+
T Consensus       162 --~~~~~~i~adlvIgADG~~S~v  183 (415)
T PRK07364        162 --EGKQQTLQSKLVVAADGARSPI  183 (415)
T ss_pred             --CCcceEEeeeEEEEeCCCCchh
Confidence              0123579999999999987754

>PRK09126 hypothetical protein; Provisional

Probab=99.38  E-value=1.5e-11  Score=119.73  Aligned_cols=135  Identities=20%  Similarity=0.292  Sum_probs=87.0

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCc--cccCCccchhhhccchHHHHHHHhCCC-----------
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG--AWLGGQLFSAMVVRKPAHIFLDELGID-----------  156 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~--~~~~g~~~~~~~~~~~~~~~l~~~G~~-----------  156 (356)
                      ++||+|||||++|+++|+.|+++ |++|+|+||...+.-.  ...+.    .........+.|+++|+.           
T Consensus         3 ~~dviIvGgG~aGl~~A~~L~~~-G~~v~v~E~~~~~~~~~~~~~g~----~i~l~~~~~~~L~~lGl~~~~~~~~~~~~   77 (392)
T PRK09126          3 HSDIVVVGAGPAGLSFARSLAGS-GLKVTLIERQPLAALADPAFDGR----EIALTHASREILQRLGAWDRIPEDEISPL   77 (392)
T ss_pred             cccEEEECcCHHHHHHHHHHHhC-CCcEEEEeCCCcccccCCCCchh----HHHhhHHHHHHHHHCCChhhhccccCCcc
Confidence            58999999999999999999999 9999999998754210  00010    011112223344444431           


Q ss_pred             ---------------ccc----cCCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecc
Q 018414          157 ---------------YDE----QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMN  217 (356)
Q Consensus       157 ---------------~~~----~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~  217 (356)
                                     +..    ...+....+...+.+.|++.+.+..|++++++++++++..+++.+. +...+      
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~-v~~~~------  150 (392)
T PRK09126         78 RDAKVLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQ-VTLAN------  150 (392)
T ss_pred             ceEEEEcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEE-EEEcC------
Confidence                           000    0001111233456677777776667999999999999987766543 44331      


Q ss_pred             cCCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414          218 HDTQSCMDPNVMEAKVVVSSCGHDGPF  244 (356)
Q Consensus       218 ~~~~~~g~~~~i~Ak~VI~AtGg~~~~  244 (356)
                              +.+++||.||.|+|..+..
T Consensus       151 --------g~~~~a~~vI~AdG~~S~v  169 (392)
T PRK09126        151 --------GRRLTARLLVAADSRFSAT  169 (392)
T ss_pred             --------CCEEEeCEEEEeCCCCchh
Confidence                    3579999999999977643

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=99.38  E-value=3.5e-12  Score=119.09  Aligned_cols=134  Identities=20%  Similarity=0.286  Sum_probs=89.5

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHH------HHHHHhCCCcccc-C
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAH------IFLDELGIDYDEQ-D  161 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~------~~l~~~G~~~~~~-~  161 (356)
                      .+|||+|||+||+|..||+.+++. |++.+.+||+...||+|.+.||++++.+.+....      +.+++.|+..... -
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQl-GlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~  116 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQL-GLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSL  116 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHHh-cceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccceec
Confidence            369999999999999999999999 9999999999999999999999999887765321      2445566655321 0


Q ss_pred             CeEE-Eech----HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEE
Q 018414          162 NYVV-IKHA----ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVS  236 (356)
Q Consensus       162 ~~~~-~~~~----~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~  236 (356)
                      +.+. ..+.    ..+... ++.+.++.+|+++.++-   -..+..+|. +..            .+|+...+.+|++|+
T Consensus       117 dl~~~~~~k~~~vk~Lt~g-i~~lfkknkV~~~kG~g---sf~~p~~V~-v~k------------~dg~~~ii~aKnIii  179 (506)
T KOG1335|consen  117 DLQAMMKAKDNAVKQLTGG-IENLFKKNKVTYVKGFG---SFLDPNKVS-VKK------------IDGEDQIIKAKNIII  179 (506)
T ss_pred             CHHHHHHHHHHHHHHHhhH-HHHHhhhcCeEEEeeeE---eecCCceEE-Eec------------cCCCceEEeeeeEEE
Confidence            1100 1111    222233 33334467888877652   112233332 111            134568999999999


Q ss_pred             cCCC
Q 018414          237 SCGH  240 (356)
Q Consensus       237 AtGg  240 (356)
                      |||.
T Consensus       180 ATGS  183 (506)
T KOG1335|consen  180 ATGS  183 (506)
T ss_pred             EeCC
Confidence            9995

>PTZ00058 glutathione reductase; Provisional

Probab=99.38  E-value=3.3e-12  Score=129.46  Aligned_cols=103  Identities=20%  Similarity=0.316  Sum_probs=71.0

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchH----HHHHHHhCCCccccCCeE
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA----HIFLDELGIDYDEQDNYV  164 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~----~~~l~~~G~~~~~~~~~~  164 (356)
                      .+|||+|||+|++|+.||+.|++. |++|+||||. .+||+|.+.||++.+.+.....    .+....+|+......+|.
T Consensus        47 ~~yDvvVIG~G~aG~~aA~~aa~~-G~~ValIEk~-~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~d~~  124 (561)
T PTZ00058         47 MVYDLIVIGGGSGGMAAARRAARN-KAKVALVEKD-YLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSFNLP  124 (561)
T ss_pred             ccccEEEECcCHHHHHHHHHHHHc-CCeEEEEecc-cccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCccCHH
Confidence            369999999999999999999999 9999999997 6999999999999988876532    223445666432111221


Q ss_pred             E-EechHHHHHH---HHHHHHcCCCcEEEcCeE
Q 018414          165 V-IKHAALFTST---IMSKLLARPNVKLFNAVA  193 (356)
Q Consensus       165 ~-~~~~~~~~~~---l~~~~~~~~gv~i~~~~~  193 (356)
                      . ..+...+...   .++...++.||+++.++.
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a  157 (561)
T PTZ00058        125 LLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKG  157 (561)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEE
Confidence            1 1122222222   233334467999998863

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=99.37  E-value=1.2e-11  Score=126.63  Aligned_cols=60  Identities=22%  Similarity=0.299  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEc-CEEEEcCCCCCC
Q 018414          172 FTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEA-KVVVSSCGHDGP  243 (356)
Q Consensus       172 ~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A-k~VI~AtGg~~~  243 (356)
                      +...|.+.+. +.|++++++++|++|+.++++|.+|.+..       .    +....++| |.||+|+|+++.
T Consensus       219 l~~~L~~~a~-~~Gv~i~~~t~v~~l~~~~g~v~GV~~~~-------~----~~~~~i~a~k~VVlAtGg~~~  279 (581)
T PRK06134        219 LVARLLKSAE-DLGVRIWESAPARELLREDGRVAGAVVET-------P----GGLQEIRARKGVVLAAGGFPH  279 (581)
T ss_pred             HHHHHHHHHH-hCCCEEEcCCEEEEEEEeCCEEEEEEEEE-------C----CcEEEEEeCCEEEEcCCCccc
Confidence            4456666665 67999999999999998888999987642       0    12356889 999999999873

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=99.36  E-value=4.7e-13  Score=132.08  Aligned_cols=135  Identities=28%  Similarity=0.426  Sum_probs=37.8

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhh------hccchHHHHHHHhCC---C-ccccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAM------VVRKPAHIFLDELGI---D-YDEQD  161 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~------~~~~~~~~~l~~~G~---~-~~~~~  161 (356)
                      ||||||||++|++||+.+++. |++|+|||+...+||....++......      ....-..++++++.-   . .....
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~-G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~   79 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARA-GAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRY   79 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHT-TS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST------------
T ss_pred             CEEEECccHHHHHHHHHHHHC-CCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhccccccccc
Confidence            899999999999999999999 999999999999988665444322111      011111222222211   0 11111


Q ss_pred             CeE--EEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCC
Q 018414          162 NYV--VIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG  239 (356)
Q Consensus       162 ~~~--~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtG  239 (356)
                      .+.  ...+...+ ..+++.+.++.|+++++++.+.++..+++++.+|.+.+       .   . ...+++||.||+|||
T Consensus        80 ~~~~~~~~~~~~~-~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~-------~---~-g~~~i~A~~~IDaTG  147 (428)
T PF12831_consen   80 GWVSNVPFDPEVF-KAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVET-------K---S-GRKEIRAKVFIDATG  147 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccc-cccccccccccccccccccccccccccccccccccccc-------c---c-ccccccccccccccc
Confidence            110  11122222 33334444578999999999999999999999998853       1   1 157899999999999

>PRK08244 hypothetical protein; Provisional

Probab=99.36  E-value=2e-11  Score=122.71  Aligned_cols=133  Identities=20%  Similarity=0.258  Sum_probs=84.6

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCC--------------
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI--------------  155 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~--------------  155 (356)
                      ++||+||||||+|+++|+.|++. |++|+||||.+.+....  .+     ........+.|+++|+              
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~~-G~~v~viEr~~~~~~~~--ra-----~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~   73 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELALA-GVKTCVIERLKETVPYS--KA-----LTLHPRTLEILDMRGLLERFLEKGRKLPSG   73 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCCCCCc--ce-----eEecHHHHHHHHhcCcHHHHHhhcccccce
Confidence            48999999999999999999999 99999999986542110  00     0011111222222222              


Q ss_pred             ---------Cccc---cCCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCC
Q 018414          156 ---------DYDE---QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSC  223 (356)
Q Consensus       156 ---------~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~  223 (356)
                               .+..   ...+....+...+.+.|.+.+. +.|++++++++++++..+++.+. +...+       .   +
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~~~-~~gv~v~~~~~v~~i~~~~~~v~-v~~~~-------~---~  141 (493)
T PRK08244         74 HFAGLDTRLDFSALDTSSNYTLFLPQAETEKVLEEHAR-SLGVEIFRGAEVLAVRQDGDGVE-VVVRG-------P---D  141 (493)
T ss_pred             EEecccccCCcccCCCCCCcEEEecHHHHHHHHHHHHH-HcCCeEEeCCEEEEEEEcCCeEE-EEEEe-------C---C
Confidence                     1111   0122233445566666666665 56999999999999988777654 22221       0   0


Q ss_pred             CCCeEEEcCEEEEcCCCCCC
Q 018414          224 MDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       224 g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      + ..+++||+||.|+|..+.
T Consensus       142 g-~~~i~a~~vVgADG~~S~  160 (493)
T PRK08244        142 G-LRTLTSSYVVGADGAGSI  160 (493)
T ss_pred             c-cEEEEeCEEEECCCCChH
Confidence            1 257999999999997763

>PRK06184 hypothetical protein; Provisional

Probab=99.35  E-value=1.9e-11  Score=123.16  Aligned_cols=133  Identities=20%  Similarity=0.249  Sum_probs=84.9

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCC---------Cccc-
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI---------DYDE-  159 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~---------~~~~-  159 (356)
                      ++||+|||||++|+++|+.|+++ |++|+||||.+.+......       ........+.|+++|+         .+.. 
T Consensus         3 ~~dVlIVGaGpaGl~~A~~La~~-Gi~v~viE~~~~~~~~~ra-------~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~   74 (502)
T PRK06184          3 TTDVLIVGAGPTGLTLAIELARR-GVSFRLIEKAPEPFPGSRG-------KGIQPRTQEVFDDLGVLDRVVAAGGLYPPM   74 (502)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCCCCCcCccc-------eeecHHHHHHHHHcCcHHHHHhcCccccce
Confidence            58999999999999999999999 9999999998654321110       0011122233333332         1100 


Q ss_pred             -----cC-----------------C--eEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeee
Q 018414          160 -----QD-----------------N--YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVS  215 (356)
Q Consensus       160 -----~~-----------------~--~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~  215 (356)
                           ..                 .  +....+...+.+.|.+.+. +.|++++++++++++..+++.+.......    
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~-~~gv~i~~~~~v~~i~~~~~~v~v~~~~~----  149 (502)
T PRK06184         75 RIYRDDGSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLA-ELGHRVEFGCELVGFEQDADGVTARVAGP----  149 (502)
T ss_pred             eEEeCCceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHH-HCCCEEEeCcEEEEEEEcCCcEEEEEEeC----
Confidence                 00                 0  0112233445566777765 55999999999999988777654332210    


Q ss_pred             cccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          216 MNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       216 ~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                              .+..+++||+||.|+|.++.
T Consensus       150 --------~~~~~i~a~~vVgADG~~S~  169 (502)
T PRK06184        150 --------AGEETVRARYLVGADGGRSF  169 (502)
T ss_pred             --------CCeEEEEeCEEEECCCCchH
Confidence                    12467999999999997764

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.35  E-value=2.2e-11  Score=118.07  Aligned_cols=134  Identities=14%  Similarity=0.267  Sum_probs=88.1

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCC---------Ccc---
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI---------DYD---  158 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~---------~~~---  158 (356)
                      +||+|||||++|+++|+.|++. |++|+|+|+.+.........+   ..........+.|+++|+         ++.   
T Consensus         2 ~dV~IvGgG~~Gl~~A~~L~~~-G~~v~l~E~~~~~~~~~~~~~---r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~   77 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQK-GIKTTIFESKSVKSPEFFKDI---RTTALTPHSKNFLFSIDIWEELEKFVAEMQDIY   77 (374)
T ss_pred             ccEEEECCCHHHHHHHHHHHcC-CCeEEEecCCCCCCCccCcCc---eEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEE
Confidence            7999999999999999999999 999999998743211100000   001111222333333332         110   


Q ss_pred             ---cc------------CCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCC
Q 018414          159 ---EQ------------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSC  223 (356)
Q Consensus       159 ---~~------------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~  223 (356)
                         ..            ..+.+..+...+.+.|++++.+..+++++++++++++..+++.+. +...             
T Consensus        78 ~~~~~g~~~~~~~~~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~-v~~~-------------  143 (374)
T PRK06617         78 VVDNKASEILDLRNDADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDYSI-IKFD-------------  143 (374)
T ss_pred             EEECCCceEEEecCCCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEE-EEEc-------------
Confidence               00            112234566888899999987666799999999999988776554 3332             


Q ss_pred             CCCeEEEcCEEEEcCCCCCCC
Q 018414          224 MDPNVMEAKVVVSSCGHDGPF  244 (356)
Q Consensus       224 g~~~~i~Ak~VI~AtGg~~~~  244 (356)
                       + .+++||.||.|+|.+|..
T Consensus       144 -~-~~~~adlvIgADG~~S~v  162 (374)
T PRK06617        144 -D-KQIKCNLLIICDGANSKV  162 (374)
T ss_pred             -C-CEEeeCEEEEeCCCCchh
Confidence             1 379999999999987754

>PRK12839 hypothetical protein; Provisional

Probab=99.35  E-value=1.4e-11  Score=125.49  Aligned_cols=41  Identities=34%  Similarity=0.581  Sum_probs=37.3

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~  130 (356)
                      .++||+|||+|.+|+++|+.|++. |.+|+||||...+||.+
T Consensus         7 ~~~dv~ViG~G~aG~~aa~~~~~~-g~~v~~iek~~~~gg~~   47 (572)
T PRK12839          7 HTYDVVVVGSGAGGLSAAVAAAYG-GAKVLVVEKASTCGGAT   47 (572)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCCCccc
Confidence            369999999999999999999999 99999999998777654

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=99.35  E-value=2.4e-11  Score=118.16  Aligned_cols=133  Identities=25%  Similarity=0.388  Sum_probs=86.7

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCC--ccccCCccchhhhccchHHHHHHHhCCCcc---------
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG--GAWLGGQLFSAMVVRKPAHIFLDELGIDYD---------  158 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg--~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~---------  158 (356)
                      .+||+|||||++|+++|+.|++. |++|+|+||...+..  ..|..    ..........+.|+++|+.-.         
T Consensus         5 ~~dv~IvGgG~aGl~~A~~L~~~-G~~v~v~E~~~~~~~~~~~~~~----r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~   79 (388)
T PRK07608          5 KFDVVVVGGGLVGASLALALAQS-GLRVALLAPRAPPRPADDAWDS----RVYAISPSSQAFLERLGVWQALDAARLAPV   79 (388)
T ss_pred             cCCEEEECcCHHHHHHHHHHHhC-CCeEEEEecCCCccccCCCCCC----ceEeecHHHHHHHHHcCchhhhhhhcCCcc
Confidence            58999999999999999999999 999999999876432  11110    111112223334444333100         


Q ss_pred             -------cc-------------CCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeeccc
Q 018414          159 -------EQ-------------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH  218 (356)
Q Consensus       159 -------~~-------------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~  218 (356)
                             ..             +......+...+.+.|.+.+.+..+++++ +++++++..+++.+. +.+.+       
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~-v~~~~-------  150 (388)
T PRK07608         80 YDMRVFGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDAAT-LTLAD-------  150 (388)
T ss_pred             eEEEEEECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEE-EEECC-------
Confidence                   00             00112334567888888888744349999 889999987766543 44431       


Q ss_pred             CCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          219 DTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       219 ~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                             +.+++||.||.|+|.++.
T Consensus       151 -------g~~~~a~~vI~adG~~S~  168 (388)
T PRK07608        151 -------GQVLRADLVVGADGAHSW  168 (388)
T ss_pred             -------CCEEEeeEEEEeCCCCch
Confidence                   357999999999997764

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.35  E-value=5.5e-12  Score=125.85  Aligned_cols=136  Identities=21%  Similarity=0.248  Sum_probs=86.5

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHH-H-----HHHHhCCCccccCCe
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAH-I-----FLDELGIDYDEQDNY  163 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~-~-----~l~~~G~~~~~~~~~  163 (356)
                      +|||+|||+||+|+.||+.|++. |++|+|+|+...+||.|.+.||++.+.+...... +     .+.++|+......+|
T Consensus         3 ~~DvvVIG~GpaG~~AA~~aa~~-G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~~   81 (466)
T PRK06115          3 SYDVVIIGGGPGGYNAAIRAGQL-GLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLNL   81 (466)
T ss_pred             cccEEEECCCHHHHHHHHHHHhC-CCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccCH
Confidence            59999999999999999999999 9999999987789999999999999887664321 1     233456543211111


Q ss_pred             EE-EechHHHHH---HHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCC
Q 018414          164 VV-IKHAALFTS---TIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG  239 (356)
Q Consensus       164 ~~-~~~~~~~~~---~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtG  239 (356)
                      .. ..+......   .-++...++.+++++.+..  .+. +++++. +...+            ++..++++|+||+|||
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a--~~~-~~~~v~-v~~~~------------g~~~~~~~d~lVIATG  145 (466)
T PRK06115         82 AQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWG--RLD-GVGKVV-VKAED------------GSETQLEAKDIVIATG  145 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEE--EEc-cCCEEE-EEcCC------------CceEEEEeCEEEEeCC
Confidence            10 001111111   1123334456899888752  222 233332 22211            1235799999999999


Q ss_pred             CCC
Q 018414          240 HDG  242 (356)
Q Consensus       240 g~~  242 (356)
                      +..
T Consensus       146 s~p  148 (466)
T PRK06115        146 SEP  148 (466)
T ss_pred             CCC
Confidence            764

>PRK06126 hypothetical protein; Provisional

Probab=99.35  E-value=2.3e-11  Score=123.72  Aligned_cols=145  Identities=17%  Similarity=0.188  Sum_probs=86.4

Q ss_pred             cCCcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccch---hhhccchHHHHHHHhCCCccc----
Q 018414           87 TYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFS---AMVVRKPAHIFLDELGIDYDE----  159 (356)
Q Consensus        87 ~~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~---~~~~~~~~~~~l~~~G~~~~~----  159 (356)
                      .+.++||+|||||++|+++|+.|+++ |++|+|+||...+..... ...+..   ..+..-...+.+.+.+.+...    
T Consensus         4 ~~~~~~VlIVGaGpaGL~~Al~La~~-G~~v~viEr~~~~~~~~r-a~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~   81 (545)
T PRK06126          4 NTSETPVLIVGGGPVGLALALDLGRR-GVDSILVERKDGTAFNPK-ANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDI   81 (545)
T ss_pred             CCccCCEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCCCCCCCCc-cccCCHHHHHHHHhcChHHHHHhhcCCccccCCc
Confidence            34469999999999999999999999 999999999864321100 000000   000000111222222221100    


Q ss_pred             ------cC-------------C---------------eEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEE
Q 018414          160 ------QD-------------N---------------YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVG  205 (356)
Q Consensus       160 ------~~-------------~---------------~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~  205 (356)
                            .+             .               .........+...|++.+.+..+++++++++++++..+++.+.
T Consensus        82 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~  161 (545)
T PRK06126         82 AYFTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVT  161 (545)
T ss_pred             eEEecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCeEE
Confidence                  00             0               0011222445567777776567899999999999998877665


Q ss_pred             EEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          206 GVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       206 gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      ....+       ..   +++..++++|+||.|+|.++.
T Consensus       162 v~~~~-------~~---~g~~~~i~ad~vVgADG~~S~  189 (545)
T PRK06126        162 ATVED-------LD---GGESLTIRADYLVGCDGARSA  189 (545)
T ss_pred             EEEEE-------CC---CCcEEEEEEEEEEecCCcchH
Confidence            33221       11   123468999999999998774

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.34  E-value=5.3e-12  Score=126.13  Aligned_cols=136  Identities=21%  Similarity=0.263  Sum_probs=88.3

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchH----HHHHHHhCCCcccc-CCeE
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA----HIFLDELGIDYDEQ-DNYV  164 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~----~~~l~~~G~~~~~~-~~~~  164 (356)
                      +|||+|||||++|+.+|..|++. |++|+|+|+.+.+||.|++.||++.+.+.....    .+.+..+|+.+... .+|.
T Consensus         4 ~~DvvVIG~GpaG~~aA~~aa~~-G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~   82 (471)
T PRK06467          4 KTQVVVLGAGPAGYSAAFRAADL-GLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKIDID   82 (471)
T ss_pred             cceEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHH
Confidence            59999999999999999999999 999999999878999999999999887665422    23445567654321 1111


Q ss_pred             EE-echHHHHHHH---HHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCC
Q 018414          165 VI-KHAALFTSTI---MSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGH  240 (356)
Q Consensus       165 ~~-~~~~~~~~~l---~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg  240 (356)
                      .+ .+.....+.+   ++.+.++.||+++.++ +.-  .+.+.+ .|...+            ++..++++|+||+|||+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~-a~~--~~~~~v-~v~~~~------------g~~~~~~~d~lViATGs  146 (471)
T PRK06467         83 KMRARKEKVVKQLTGGLAGMAKGRKVTVVNGL-GKF--TGGNTL-EVTGED------------GKTTVIEFDNAIIAAGS  146 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEE--ccCCEE-EEecCC------------CceEEEEcCEEEEeCCC
Confidence            11 1111111111   2233446799999874 222  233332 222211            12357999999999997


Q ss_pred             CC
Q 018414          241 DG  242 (356)
Q Consensus       241 ~~  242 (356)
                      ..
T Consensus       147 ~p  148 (471)
T PRK06467        147 RP  148 (471)
T ss_pred             CC
Confidence            64

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=99.34  E-value=2.7e-11  Score=117.63  Aligned_cols=139  Identities=23%  Similarity=0.319  Sum_probs=91.5

Q ss_pred             cccEEEECCCHHHHHHHHHhhcC-CCCeEEEEeccCCCCCcc--cc-----CCccch------hhhccc--hHHHHHHHh
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGA--WL-----GGQLFS------AMVVRK--PAHIFLDEL  153 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~-~G~~V~llEk~~~~Gg~~--~~-----~g~~~~------~~~~~~--~~~~~l~~~  153 (356)
                      +|||+|||||+.|+++|++|++. |.++|+||||...++...  -+     .|..+.      +++...  ...++++++
T Consensus         3 ~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~kq~   82 (429)
T COG0579           3 DYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICKQL   82 (429)
T ss_pred             ceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHHHh
Confidence            59999999999999999999997 239999999998765321  11     111111      111110  113445555


Q ss_pred             CCCccccCCeEE------------------------------------------------------EechHHHHHHHHHH
Q 018414          154 GIDYDEQDNYVV------------------------------------------------------IKHAALFTSTIMSK  179 (356)
Q Consensus       154 G~~~~~~~~~~~------------------------------------------------------~~~~~~~~~~l~~~  179 (356)
                      +++|...+...+                                                      ..+...+...|.+.
T Consensus        83 ~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~l~e~  162 (429)
T COG0579          83 GIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRALAEE  162 (429)
T ss_pred             CCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHHHHHHH
Confidence            555443321111                                                      12345677888888


Q ss_pred             HHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          180 LLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       180 ~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      +. +.|++++++++|++|...++.++.+.+..            |+.. ++||.||+|.|+++
T Consensus       163 a~-~~g~~i~ln~eV~~i~~~~dg~~~~~~~~------------g~~~-~~ak~Vin~AGl~A  211 (429)
T COG0579         163 AQ-ANGVELRLNTEVTGIEKQSDGVFVLNTSN------------GEET-LEAKFVINAAGLYA  211 (429)
T ss_pred             HH-HcCCEEEecCeeeEEEEeCCceEEEEecC------------CcEE-EEeeEEEECCchhH
Confidence            87 45999999999999999876555555532            1222 99999999999765

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=99.34  E-value=1.7e-11  Score=117.72  Aligned_cols=133  Identities=27%  Similarity=0.374  Sum_probs=86.5

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEE-eccCCCCCccccCC--ccchhhhcc------chHHHHHHHhCCCcccc--
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAII-EQSVSPGGGAWLGG--QLFSAMVVR------KPAHIFLDELGIDYDEQ--  160 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~ll-Ek~~~~Gg~~~~~g--~~~~~~~~~------~~~~~~l~~~G~~~~~~--  160 (356)
                      ||+|||||.||+.||+.+|+. |.+|+|+ ++.+.++.-.++..  ......+.+      .......+..++.+...  
T Consensus         1 DViVVGgG~AG~eAA~aaAr~-G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~   79 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARM-GAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNR   79 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHT-T--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEEST
T ss_pred             CEEEECCCHHHHHHHHHHHHC-CCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhcccc
Confidence            899999999999999999999 9999999 45444543222211  111111111      12223444455544322  


Q ss_pred             ------CCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEE
Q 018414          161 ------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVV  234 (356)
Q Consensus       161 ------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~V  234 (356)
                            .......+...|...+.+.+.+.+|++++.. +|++|..++++|.||.+.+              +..+.+|.|
T Consensus        80 skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~-~V~~l~~e~~~v~GV~~~~--------------g~~~~a~~v  144 (392)
T PF01134_consen   80 SKGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQG-EVTDLIVENGKVKGVVTKD--------------GEEIEADAV  144 (392)
T ss_dssp             TS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES--EEEEEECTTEEEEEEETT--------------SEEEEECEE
T ss_pred             cCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEc-ccceEEecCCeEEEEEeCC--------------CCEEecCEE
Confidence                  1122244567777888888877789999754 8999999999999999863              478999999


Q ss_pred             EEcCCC
Q 018414          235 VSSCGH  240 (356)
Q Consensus       235 I~AtGg  240 (356)
                      |+|||.
T Consensus       145 VlaTGt  150 (392)
T PF01134_consen  145 VLATGT  150 (392)
T ss_dssp             EE-TTT
T ss_pred             EEeccc
Confidence            999997

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=99.34  E-value=2.2e-11  Score=124.57  Aligned_cols=61  Identities=20%  Similarity=0.154  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEc-CEEEEcCCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEA-KVVVSSCGHDGP  243 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A-k~VI~AtGg~~~  243 (356)
                      .+...|++.+. +.|+++++++.+++|+.++++|.+|.+..           +++..++.| +.||+|||+++.
T Consensus       222 ~l~~aL~~~~~-~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~-----------~g~~~~i~A~~~VVlAtGg~~~  283 (578)
T PRK12843        222 ALIGRLLYSLR-ARGVRILTQTDVESLETDHGRVIGATVVQ-----------GGVRRRIRARGGVVLATGGFNR  283 (578)
T ss_pred             HHHHHHHHHHH-hCCCEEEeCCEEEEEEeeCCEEEEEEEec-----------CCeEEEEEccceEEECCCCccc
Confidence            35566777765 67999999999999998889999987742           112356886 789999999885

>PRK07190 hypothetical protein; Provisional

Probab=99.33  E-value=2.6e-11  Score=121.54  Aligned_cols=129  Identities=16%  Similarity=0.248  Sum_probs=81.7

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCC---------Cc---
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI---------DY---  157 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~---------~~---  157 (356)
                      .+||+|||||++|+++|+.|+++ |++|+||||...+.......       .......+.|+.+|+         ++   
T Consensus         5 ~~dVlIVGAGPaGL~lA~~Lar~-Gi~V~llEr~~~~~~~gra~-------~l~~~tle~L~~lGl~~~l~~~~~~~~~~   76 (487)
T PRK07190          5 VTDVVIIGAGPVGLMCAYLGQLC-GLNTVIVDKSDGPLEVGRAD-------ALNARTLQLLELVDLFDELYPLGKPCNTS   76 (487)
T ss_pred             cceEEEECCCHHHHHHHHHHHHc-CCCEEEEeCCCcccccccce-------EeCHHHHHHHHhcChHHHHHhhCccceeE
Confidence            58999999999999999999999 99999999987653211100       001111111111111         10   


Q ss_pred             ----------------ccc----CCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecc
Q 018414          158 ----------------DEQ----DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMN  217 (356)
Q Consensus       158 ----------------~~~----~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~  217 (356)
                                      +..    ..+........+...|.+++. +.|++++++++|+++..+++.+... +.       
T Consensus        77 ~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~-~~Gv~v~~~~~v~~l~~~~~~v~v~-~~-------  147 (487)
T PRK07190         77 SVWANGKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLK-EAGAAVKRNTSVVNIELNQAGCLTT-LS-------  147 (487)
T ss_pred             EEecCCceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHH-HCCCEEEeCCEEEEEEEcCCeeEEE-EC-------
Confidence                            000    001122233445555666665 5699999999999999887765432 22       


Q ss_pred             cCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          218 HDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       218 ~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                             ++.+++||+||.|+|+.+
T Consensus       148 -------~g~~v~a~~vVgADG~~S  165 (487)
T PRK07190        148 -------NGERIQSRYVIGADGSRS  165 (487)
T ss_pred             -------CCcEEEeCEEEECCCCCH
Confidence                   125799999999999765

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=99.33  E-value=3.2e-11  Score=122.54  Aligned_cols=142  Identities=20%  Similarity=0.240  Sum_probs=90.8

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccch----------------------------hh-
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFS----------------------------AM-  140 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~----------------------------~~-  140 (356)
                      +|||+|||||+.|+++|+.|+++ |++|+||||+....|+++....+..                            .. 
T Consensus         6 ~~DVvIIGGGi~G~~iA~~La~r-G~~V~LlEk~d~~~GaS~~~~gllh~g~ry~~~~~~~~~~~~~e~~~l~~~a~~~~   84 (546)
T PRK11101          6 ETDVIIIGGGATGAGIARDCALR-GLRCILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCV   84 (546)
T ss_pred             cccEEEECcCHHHHHHHHHHHHc-CCeEEEEECCCCCCCcccccccceeccchhcccCHHHHHHHHHHHHHHHHhchHhh
Confidence            59999999999999999999999 9999999998654443322111000                            00 


Q ss_pred             -------h-ccchH-------HHHHHHhCCCcccc-------------CC----eE---EEechHHHHHHHHHHHHcCCC
Q 018414          141 -------V-VRKPA-------HIFLDELGIDYDEQ-------------DN----YV---VIKHAALFTSTIMSKLLARPN  185 (356)
Q Consensus       141 -------~-~~~~~-------~~~l~~~G~~~~~~-------------~~----~~---~~~~~~~~~~~l~~~~~~~~g  185 (356)
                             + .....       .+++...|++....             ..    +.   ...+...+...+...+. +.|
T Consensus        85 ~~~g~l~~~~~~~~~~~~~~~~~~~~~~Gi~~~~l~~~e~~~~eP~l~~~~~ga~~~~dg~vdp~rl~~al~~~A~-~~G  163 (546)
T PRK11101         85 EPTDGLFITLPEDDLAFQATFIRACEEAGIEAEAIDPQQALILEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAK-EHG  163 (546)
T ss_pred             cccCCceEEeccccHHHHHHHHHHHHHcCCCcEEECHHHHHHhCCCcCccceEEEEecCcEECHHHHHHHHHHHHH-hCC
Confidence                   0 00000       11223344432110             00    00   01234556666666665 679


Q ss_pred             cEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          186 VKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       186 v~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      ++++++++|+++..+++++.+|.+.+      ..   +++..+|+|+.||+|+|.++
T Consensus       164 a~i~~~t~V~~i~~~~~~v~gv~v~d------~~---~g~~~~i~A~~VVnAaG~wa  211 (546)
T PRK11101        164 AQILTYHEVTGLIREGDTVCGVRVRD------HL---TGETQEIHAPVVVNAAGIWG  211 (546)
T ss_pred             CEEEeccEEEEEEEcCCeEEEEEEEE------cC---CCcEEEEECCEEEECCChhH
Confidence            99999999999998888888887642      11   11236799999999999875

>PRK14694 putative mercuric reductase; Provisional

Probab=99.33  E-value=8.8e-12  Score=124.47  Aligned_cols=139  Identities=14%  Similarity=0.173  Sum_probs=86.9

Q ss_pred             ccCCcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHH-HHHHH----hCCCcc-c
Q 018414           86 ITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAH-IFLDE----LGIDYD-E  159 (356)
Q Consensus        86 ~~~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~-~~l~~----~G~~~~-~  159 (356)
                      +...+|||+|||||++|+.+|+.|++. |++|+|+|++ .+||+|++.||++.+.+.+.... +....    +|+... .
T Consensus         2 ~~~~~~dviVIGaG~aG~~aA~~l~~~-g~~v~lie~~-~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~   79 (468)
T PRK14694          2 MSDNNLHIAVIGSGGSAMAAALKATER-GARVTLIERG-TIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAP   79 (468)
T ss_pred             CCCCcCCEEEECCCHHHHHHHHHHHhC-CCcEEEEEcc-ccccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCC
Confidence            445679999999999999999999999 9999999997 68999999999998877654332 22222    233211 1


Q ss_pred             cCCeEE-EechHHHHHHH----HHH-HHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCE
Q 018414          160 QDNYVV-IKHAALFTSTI----MSK-LLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKV  233 (356)
Q Consensus       160 ~~~~~~-~~~~~~~~~~l----~~~-~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~  233 (356)
                      ..+|.. ..+.......+    ++. +.+..+++++.+ +++.+.  .+. ..|.+.+            ++..++++|+
T Consensus        80 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g-~v~~id--~~~-~~V~~~~------------g~~~~~~~d~  143 (468)
T PRK14694         80 VVDRSALLAQQQARVEELRESKYQSILRENAAITVLNG-EARFVD--ERT-LTVTLND------------GGEQTVHFDR  143 (468)
T ss_pred             ccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEE-EEEEec--CCE-EEEEecC------------CCeEEEECCE
Confidence            111110 01111222221    112 222348888887 465552  332 2233321            1235799999


Q ss_pred             EEEcCCCCC
Q 018414          234 VVSSCGHDG  242 (356)
Q Consensus       234 VI~AtGg~~  242 (356)
                      ||+|||...
T Consensus       144 lViATGs~p  152 (468)
T PRK14694        144 AFIGTGARP  152 (468)
T ss_pred             EEEeCCCCC
Confidence            999999764

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=99.33  E-value=3.4e-11  Score=117.23  Aligned_cols=135  Identities=21%  Similarity=0.275  Sum_probs=86.2

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCC--C-CccccCCccchhhhccchHHHHHHHhCCC----------
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSP--G-GGAWLGGQLFSAMVVRKPAHIFLDELGID----------  156 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~--G-g~~~~~g~~~~~~~~~~~~~~~l~~~G~~----------  156 (356)
                      .+||+|||||++|+++|+.|++. |++|+|+|+....  . .+.+  +  ...........+.|+++|+.          
T Consensus         3 ~~dv~IvGgG~aGl~~A~~L~~~-G~~v~l~E~~~~~~~~~~~~~--~--~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~   77 (384)
T PRK08849          3 KYDIAVVGGGMVGAATALGFAKQ-GRSVAVIEGGEPKAFEPSQPM--D--IRVSAISQTSVDLLESLGAWSSIVAMRVCP   77 (384)
T ss_pred             cccEEEECcCHHHHHHHHHHHhC-CCcEEEEcCCCcccCCCCCCC--C--ccEEEecHHHHHHHHHCCCchhhhHhhCCc
Confidence            38999999999999999999999 9999999987421  0 0000  0  00011122233444444421          


Q ss_pred             cc------c-------------cCCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecc
Q 018414          157 YD------E-------------QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMN  217 (356)
Q Consensus       157 ~~------~-------------~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~  217 (356)
                      +.      .             ...+.+......+...|++++.+..|++++++++++++..+++.+. +...+      
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~-v~~~~------  150 (384)
T PRK08849         78 YKRLETWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNR-VTLES------  150 (384)
T ss_pred             cceEEEEeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEE-EEECC------
Confidence            00      0             0011111222456667777776667899999999999988776553 44431      


Q ss_pred             cCCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414          218 HDTQSCMDPNVMEAKVVVSSCGHDGPF  244 (356)
Q Consensus       218 ~~~~~~g~~~~i~Ak~VI~AtGg~~~~  244 (356)
                              +.++++|.||.|+|..+..
T Consensus       151 --------g~~~~~~lvIgADG~~S~v  169 (384)
T PRK08849        151 --------GAEIEAKWVIGADGANSQV  169 (384)
T ss_pred             --------CCEEEeeEEEEecCCCchh
Confidence                    3689999999999987753

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=99.33  E-value=4.3e-11  Score=116.65  Aligned_cols=141  Identities=18%  Similarity=0.302  Sum_probs=84.1

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEecc-CCCCCccccCCccchhhhccchH-HHHH----HHh------CCC--
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS-VSPGGGAWLGGQLFSAMVVRKPA-HIFL----DEL------GID--  156 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~-~~~Gg~~~~~g~~~~~~~~~~~~-~~~l----~~~------G~~--  156 (356)
                      |||+||||||+|+++|+.|++. |++|+|+|+. ..+.   ..++.+....+..-.. .+++    ...      +..  
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~-G~~V~l~E~~~~~~~---~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~   76 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARA-GIETILLERALSNIK---PCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIK   76 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-CCcEEEEECCCCCcC---cCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceee
Confidence            7999999999999999999999 9999999997 3221   1122221111110000 0111    000      000  


Q ss_pred             --ccccCCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEE
Q 018414          157 --YDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVV  234 (356)
Q Consensus       157 --~~~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~V  234 (356)
                        +.....|....+...|.+.|.+++. +.|++++.. .++++..+++.+. +...++      ..+..++..+++||.|
T Consensus        77 ~~~~~~~~~~~~~~r~~fd~~L~~~a~-~~G~~v~~~-~v~~v~~~~~~~~-v~~~~~------~~~~~~~~~~i~a~~V  147 (388)
T TIGR02023        77 VTIPSEDGYVGMVRREVFDSYLRERAQ-KAGAELIHG-LFLKLERDRDGVT-LTYRTP------KKGAGGEKGSVEADVV  147 (388)
T ss_pred             eccCCCCCceEeeeHHHHHHHHHHHHH-hCCCEEEee-EEEEEEEcCCeEE-EEEEec------cccCCCcceEEEeCEE
Confidence              0111123333566788888888876 569999766 6889887766543 333210      0000112467999999


Q ss_pred             EEcCCCCCCC
Q 018414          235 VSSCGHDGPF  244 (356)
Q Consensus       235 I~AtGg~~~~  244 (356)
                      |.|+|..+.+
T Consensus       148 I~AdG~~S~v  157 (388)
T TIGR02023       148 IGADGANSPV  157 (388)
T ss_pred             EECCCCCcHH
Confidence            9999987744

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=99.33  E-value=5.8e-12  Score=118.66  Aligned_cols=158  Identities=25%  Similarity=0.373  Sum_probs=107.6

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcC-----CCCeEEEEeccCCCCCccccCCccch----hhhcc-------------chH
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKN-----PNIQIAIIEQSVSPGGGAWLGGQLFS----AMVVR-------------KPA  146 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~-----~G~~V~llEk~~~~Gg~~~~~g~~~~----~~~~~-------------~~~  146 (356)
                      .++||+|||||||||++|++|.+.     ..++|+|+||...+||....+..+-.    .++.+             ...
T Consensus        75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~apl~t~vT~d~  154 (621)
T KOG2415|consen   75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGAPLNTPVTSDK  154 (621)
T ss_pred             ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCCcccccccccc
Confidence            369999999999999999998752     16799999999999987765543211    11100             000


Q ss_pred             HHHHHH-hCC------CccccCCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEe-CCeEEEEEEcceeeeccc
Q 018414          147 HIFLDE-LGI------DYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNH  218 (356)
Q Consensus       147 ~~~l~~-~G~------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~-~~~v~gv~~~~~~~~~~~  218 (356)
                      ..+|.. +.+      +++..++|.  ..-..+.+.|-+++. +.|++|+.+..+.+++.+ ++.|.|+.+++..+..++
T Consensus       155 ~~fLt~~~~i~vPv~~pm~NhGNYv--v~L~~~v~wLg~kAE-e~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G  231 (621)
T KOG2415|consen  155 FKFLTGKGRISVPVPSPMDNHGNYV--VSLGQLVRWLGEKAE-ELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDG  231 (621)
T ss_pred             eeeeccCceeecCCCcccccCCcEE--EEHHHHHHHHHHHHH-hhCceeccccchhheeEcCCCcEeeEeeccccccCCC
Confidence            111111 111      111223333  234778888888876 789999999999999886 679999999987666665


Q ss_pred             CCCCCC-CCeEEEcCEEEEcCCCCCCCCCccc
Q 018414          219 DTQSCM-DPNVMEAKVVVSSCGHDGPFGATGV  249 (356)
Q Consensus       219 ~~~~~g-~~~~i~Ak~VI~AtGg~~~~~~~~~  249 (356)
                      ..+.+. .+..++|+..|.|.|.+|++..+-+
T Consensus       232 ~pKd~FerGme~hak~TifAEGc~G~Lskqi~  263 (621)
T KOG2415|consen  232 APKDTFERGMEFHAKVTIFAEGCHGSLSKQII  263 (621)
T ss_pred             CccccccccceecceeEEEeccccchhHHHHH
Confidence            544322 2457999999999999997665433

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=99.32  E-value=4.3e-11  Score=116.58  Aligned_cols=136  Identities=18%  Similarity=0.285  Sum_probs=86.2

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCcc--chhhhccchHHHHHHHhCCC----------
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQL--FSAMVVRKPAHIFLDELGID----------  156 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~--~~~~~~~~~~~~~l~~~G~~----------  156 (356)
                      .+|||+|||||++|+++|+.|++. |++|+|+|+.....   +..+..  ...........+.|+++|+.          
T Consensus         4 ~~~dViIvGgG~aGl~~A~~La~~-G~~V~liE~~~~~~---~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~   79 (391)
T PRK08020          4 QPTDIAIVGGGMVGAALALGLAQH-GFSVAVLEHAAPAP---FDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHP   79 (391)
T ss_pred             ccccEEEECcCHHHHHHHHHHhcC-CCEEEEEcCCCCCc---ccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcc
Confidence            359999999999999999999999 99999999975321   000000  00000111122233333320          


Q ss_pred             ---------------cccc----CCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecc
Q 018414          157 ---------------YDEQ----DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMN  217 (356)
Q Consensus       157 ---------------~~~~----~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~  217 (356)
                                     ++..    ..+.+..+...+.+.|++.+.+..|++++++++++++..+++.+ .+...+      
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~~~------  152 (391)
T PRK08020         80 YRRLETWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDGW-ELTLAD------  152 (391)
T ss_pred             cceEEEEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeE-EEEECC------
Confidence                           0000    11112344567778888887755699999999999998776653 233321      


Q ss_pred             cCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          218 HDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       218 ~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                              ..+++||.||.|+|..+.
T Consensus       153 --------g~~~~a~~vI~AdG~~S~  170 (391)
T PRK08020        153 --------GEEIQAKLVIGADGANSQ  170 (391)
T ss_pred             --------CCEEEeCEEEEeCCCCch
Confidence                    357999999999998774

>PLN02985 squalene monooxygenase

Probab=99.32  E-value=5e-11  Score=120.08  Aligned_cols=138  Identities=25%  Similarity=0.375  Sum_probs=88.7

Q ss_pred             CCcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCC------------
Q 018414           88 YADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI------------  155 (356)
Q Consensus        88 ~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~------------  155 (356)
                      ...+||+|||||++|+++|+.|+++ |.+|+|+||........+  |     ........+.|+++|+            
T Consensus        41 ~~~~DViIVGAG~aGlalA~aLa~~-G~~V~vlEr~~~~~~~~~--g-----~~L~p~g~~~L~~LGl~d~l~~~~~~~~  112 (514)
T PLN02985         41 DGATDVIIVGAGVGGSALAYALAKD-GRRVHVIERDLREPERMM--G-----EFMQPGGRFMLSKLGLEDCLEGIDAQKA  112 (514)
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHc-CCeEEEEECcCCCCcccc--c-----cccCchHHHHHHHcCCcchhhhccCccc
Confidence            3468999999999999999999999 999999999753211111  0     0111112222222222            


Q ss_pred             --------------Ccccc-C--Ce---EEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeee
Q 018414          156 --------------DYDEQ-D--NY---VVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVS  215 (356)
Q Consensus       156 --------------~~~~~-~--~~---~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~  215 (356)
                                    +|... .  .+   ....+...+.+.|.+++.+..|++++.+ +++++..+++.+.+|....    
T Consensus       113 ~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~~~v~gV~~~~----  187 (514)
T PLN02985        113 TGMAVYKDGKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIEEKGVIKGVTYKN----  187 (514)
T ss_pred             ccEEEEECCEEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEEcCCEEEEEEEEc----
Confidence                          11100 0  00   1233456788888888876678999876 6888877777777777631    


Q ss_pred             cccCCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414          216 MNHDTQSCMDPNVMEAKVVVSSCGHDGPF  244 (356)
Q Consensus       216 ~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~  244 (356)
                        .    +|+..+++||.||.|+|.+|.+
T Consensus       188 --~----dG~~~~~~AdLVVgADG~~S~v  210 (514)
T PLN02985        188 --S----AGEETTALAPLTVVCDGCYSNL  210 (514)
T ss_pred             --C----CCCEEEEECCEEEECCCCchHH
Confidence              0    1234568899999999987743

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=99.32  E-value=4.6e-11  Score=117.02  Aligned_cols=138  Identities=15%  Similarity=0.214  Sum_probs=86.2

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCC-ccchhhhccchHHHHHHHhCCC------------
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGG-QLFSAMVVRKPAHIFLDELGID------------  156 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g-~~~~~~~~~~~~~~~l~~~G~~------------  156 (356)
                      +|||+|||||++|+++|+.|+++ |++|+|+|+.+.......... .............+.|+++|+.            
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~-G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~   80 (405)
T PRK05714          2 RADLLIVGAGMVGSALALALQGS-GLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYS   80 (405)
T ss_pred             CccEEEECccHHHHHHHHHHhcC-CCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCccce
Confidence            48999999999999999999999 999999999863211000000 0000011122233344433321            


Q ss_pred             --------------cccc----CCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeeccc
Q 018414          157 --------------YDEQ----DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH  218 (356)
Q Consensus       157 --------------~~~~----~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~  218 (356)
                                    |...    ..+....+...+.+.|++.+. +.|++++++++++++..+++.+. +...        
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~-~~gv~v~~~~~v~~i~~~~~~v~-v~~~--------  150 (405)
T PRK05714         81 EMQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLH-DSDIGLLANARLEQMRRSGDDWL-LTLA--------  150 (405)
T ss_pred             eEEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHh-cCCCEEEcCCEEEEEEEcCCeEE-EEEC--------
Confidence                          0000    001122344567777777776 56999999999999987776543 3332        


Q ss_pred             CCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414          219 DTQSCMDPNVMEAKVVVSSCGHDGPF  244 (356)
Q Consensus       219 ~~~~~g~~~~i~Ak~VI~AtGg~~~~  244 (356)
                            ++.+++||.||.|+|.++.+
T Consensus       151 ------~g~~~~a~~vVgAdG~~S~v  170 (405)
T PRK05714        151 ------DGRQLRAPLVVAADGANSAV  170 (405)
T ss_pred             ------CCCEEEeCEEEEecCCCchh
Confidence                  13579999999999987743

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=99.32  E-value=1e-11  Score=123.41  Aligned_cols=130  Identities=18%  Similarity=0.218  Sum_probs=85.3

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchH-H---HHHHHhCCCcccc--CCe
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA-H---IFLDELGIDYDEQ--DNY  163 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~-~---~~l~~~G~~~~~~--~~~  163 (356)
                      +|||+|||||++|+.||+.|++. |++|+|+||. .+||.|.+.||++.+.+..... .   +....+|+.....  .+|
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~-G~~V~liE~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~   79 (450)
T TIGR01421         2 HYDYLVIGGGSGGIASARRAAEH-GAKALLVEAK-KLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNW   79 (450)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC-CCcEEEeccc-ccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCH
Confidence            59999999999999999999999 9999999996 6899999999999887665432 2   2233456543211  111


Q ss_pred             EEE-echHHHHHHH---HHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCC
Q 018414          164 VVI-KHAALFTSTI---MSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG  239 (356)
Q Consensus       164 ~~~-~~~~~~~~~l---~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtG  239 (356)
                      ... .+...+.+.+   ++...++.|++++.++.+.   .+++.+   .+.               ...+++|+||+|||
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~---~~~~~v---~v~---------------~~~~~~d~vIiAtG  138 (450)
T TIGR01421        80 PELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARF---TKDGTV---EVN---------------GRDYTAPHILIATG  138 (450)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE---ccCCEE---EEC---------------CEEEEeCEEEEecC
Confidence            111 1112222221   2223346799999986432   233332   221               25689999999999


Q ss_pred             CCC
Q 018414          240 HDG  242 (356)
Q Consensus       240 g~~  242 (356)
                      +..
T Consensus       139 s~p  141 (450)
T TIGR01421       139 GKP  141 (450)
T ss_pred             CCC
Confidence            764

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=99.32  E-value=5.1e-11  Score=115.92  Aligned_cols=131  Identities=24%  Similarity=0.365  Sum_probs=85.5

Q ss_pred             CCcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCC---------Ccc
Q 018414           88 YADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI---------DYD  158 (356)
Q Consensus        88 ~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~---------~~~  158 (356)
                      +..+||+|||||++|+++|+.|+++ |++|+|+|+...+.... .. .+      .....+.|+++|+         ++.
T Consensus         5 ~~~~dViIVGaG~~Gl~~A~~L~~~-G~~v~liE~~~~~~~~r-~~-~l------~~~s~~~l~~lgl~~~~~~~~~~~~   75 (388)
T PRK07494          5 KEHTDIAVIGGGPAGLAAAIALARA-GASVALVAPEPPYADLR-TT-AL------LGPSIRFLERLGLWARLAPHAAPLQ   75 (388)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcC-CCeEEEEeCCCCCCCcc-hh-hC------cHHHHHHHHHhCchhhhHhhcceee
Confidence            4468999999999999999999999 99999999986542110 00 00      1112223333322         000


Q ss_pred             ------cc------------------CCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceee
Q 018414          159 ------EQ------------------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALV  214 (356)
Q Consensus       159 ------~~------------------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~  214 (356)
                            ..                  ..+.+..+...+.+.|++.+.+..++. +++++|+++..+++.+. +...    
T Consensus        76 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~~~-v~~~----  149 (388)
T PRK07494         76 SMRIVDATGRLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT-RFGDEAESVRPREDEVT-VTLA----  149 (388)
T ss_pred             EEEEEeCCCCCCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE-EECCeeEEEEEcCCeEE-EEEC----
Confidence                  00                  011123345677788888877555676 77999999988777654 4332    


Q ss_pred             ecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          215 SMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       215 ~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                                +..+++||.||.|+|..+.
T Consensus       150 ----------~g~~~~a~~vI~AdG~~S~  168 (388)
T PRK07494        150 ----------DGTTLSARLVVGADGRNSP  168 (388)
T ss_pred             ----------CCCEEEEeEEEEecCCCch
Confidence                      1357999999999998764

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=99.32  E-value=2.7e-11  Score=119.83  Aligned_cols=134  Identities=19%  Similarity=0.283  Sum_probs=94.2

Q ss_pred             EECCCHHHHHHHHHhhcCCCCeEEEEeccCC--CCCccccCCcc--------------------chhhh-----------
Q 018414           95 VVGAGSAGLSCAYELSKNPNIQIAIIEQSVS--PGGGAWLGGQL--------------------FSAMV-----------  141 (356)
Q Consensus        95 IIGgG~aGl~aA~~La~~~G~~V~llEk~~~--~Gg~~~~~g~~--------------------~~~~~-----------  141 (356)
                      |||+|.+|++||++|++. |.+|+||||...  .|+.++..+..                    +..+.           
T Consensus         1 VVG~G~AGl~AA~~Aa~~-Ga~V~vlEK~~~~~~Gg~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l   79 (432)
T TIGR02485         1 VIGGGLAGLCAAIEARRA-GASVLLLEAAPRARRGGNARHGRNIRVAHDIPTDFQRDSYPAEEFERDLAPVTGGRTNESL   79 (432)
T ss_pred             CCcccHHHHHHHHHHHhC-CCcEEEEeCCCCCcCCcCcccccchhhcccchhhhhhhhccHHHHHHHHHHhhCCCCCHHH
Confidence            799999999999999999 999999999874  35544322110                    00000           


Q ss_pred             ----c--cchHHHHHHHhCCCccccC--CeEE-------EechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEe--CCeE
Q 018414          142 ----V--RKPAHIFLDELGIDYDEQD--NYVV-------IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK--GGRV  204 (356)
Q Consensus       142 ----~--~~~~~~~l~~~G~~~~~~~--~~~~-------~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~--~~~v  204 (356)
                          .  ....++||+++|++|....  .++.       ......+.+.|.+.+. +.|++++++++|++|+.+  ++++
T Consensus        80 ~~~~~~~s~~~i~wl~~~Gv~f~~~~~g~~~~~~~~~~~~~~g~~l~~~L~~~a~-~~Gv~i~~~~~v~~l~~~~~~g~v  158 (432)
T TIGR02485        80 SRLGIGRGSRDLRWAFAHGVHLQPPAAGNLPYSRRTAFLRGGGKALTNALYSSAE-RLGVEIRYGIAVDRIPPEAFDGAH  158 (432)
T ss_pred             HHHHHhcchhHHHHHHhCCceeeecCCCCccccCceeeecCCHHHHHHHHHHHHH-HcCCEEEeCCEEEEEEecCCCCeE
Confidence                0  1134688999999885431  1111       1124567778877776 679999999999999886  5778


Q ss_pred             EEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          205 GGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       205 ~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      .++....             +..+++||.||+|||+++.
T Consensus       159 ~gv~~~~-------------~~~~i~ak~VIlAtGG~~~  184 (432)
T TIGR02485       159 DGPLTTV-------------GTHRITTQALVLAAGGLGA  184 (432)
T ss_pred             EEEEEcC-------------CcEEEEcCEEEEcCCCccc
Confidence            8876531             1357899999999998874

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PRK06370 mercuric reductase; Validated

Probab=99.31  E-value=3e-11  Score=120.54  Aligned_cols=129  Identities=19%  Similarity=0.215  Sum_probs=84.4

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHH----HHHHHhCCCccc--cCCe
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAH----IFLDELGIDYDE--QDNY  163 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~----~~l~~~G~~~~~--~~~~  163 (356)
                      +|||+|||+|++|+.+|+.|++. |++|+|+|+. .+||+|.+.||++.+.+......    +....+|+....  ..+|
T Consensus         5 ~~DvvVIG~GpaG~~aA~~aa~~-G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~   82 (463)
T PRK06370          5 RYDAIVIGAGQAGPPLAARAAGL-GMKVALIERG-LLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSVDF   82 (463)
T ss_pred             cccEEEECCCHHHHHHHHHHHhC-CCeEEEEecC-ccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCccCH
Confidence            59999999999999999999999 9999999996 68999999999998877665322    223345665321  1122


Q ss_pred             EEE-echHHH----HHHHHHHHHcCC-CcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEc
Q 018414          164 VVI-KHAALF----TSTIMSKLLARP-NVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSS  237 (356)
Q Consensus       164 ~~~-~~~~~~----~~~l~~~~~~~~-gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~A  237 (356)
                      ... .+....    ...+.+.+ ++. |++++.++.+.   .++..+   .+.               ..++++|+||+|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~-~~~~gv~v~~g~~~~---~~~~~v---~v~---------------~~~~~~d~lViA  140 (463)
T PRK06370         83 KAVMARKRRIRARSRHGSEQWL-RGLEGVDVFRGHARF---ESPNTV---RVG---------------GETLRAKRIFIN  140 (463)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHH-hcCCCcEEEEEEEEE---ccCCEE---EEC---------------cEEEEeCEEEEc
Confidence            111 111111    12222333 344 99999886542   233332   221               256899999999


Q ss_pred             CCCCC
Q 018414          238 CGHDG  242 (356)
Q Consensus       238 tGg~~  242 (356)
                      ||...
T Consensus       141 TGs~p  145 (463)
T PRK06370        141 TGARA  145 (463)
T ss_pred             CCCCC
Confidence            99764

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.31  E-value=1.1e-11  Score=123.58  Aligned_cols=134  Identities=20%  Similarity=0.293  Sum_probs=84.7

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccch-HHHH---HHHhCCCcccc-CCeE
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKP-AHIF---LDELGIDYDEQ-DNYV  164 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~-~~~~---l~~~G~~~~~~-~~~~  164 (356)
                      +|||+|||||++|+.||+.|++. |++|+|+||.. .||.|++.||++.+.+.... ..++   ...+|+.+... .+|.
T Consensus         4 ~yDvvVIGaGpaG~~aA~~aa~~-G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~   81 (462)
T PRK06416          4 EYDVIVIGAGPGGYVAAIRAAQL-GLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGIDFK   81 (462)
T ss_pred             cccEEEECCCHHHHHHHHHHHHC-CCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccCHH
Confidence            59999999999999999999999 99999999986 89999999999987665542 2222   33455543211 0111


Q ss_pred             E-EechHHHHHHH---HHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCC
Q 018414          165 V-IKHAALFTSTI---MSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGH  240 (356)
Q Consensus       165 ~-~~~~~~~~~~l---~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg  240 (356)
                      . ..+...+.+.+   ++...++.|++++.++ ++.+  +...+. +...+             ...++++|+||+|||+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~~--~~~~~~-v~~~~-------------~~~~~~~d~lViAtGs  144 (462)
T PRK06416         82 KVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGE-AKLV--DPNTVR-VMTED-------------GEQTYTAKNIILATGS  144 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEc--cCCEEE-EecCC-------------CcEEEEeCEEEEeCCC
Confidence            0 01111112222   2233346799999884 3322  333222 22110             1257999999999997


Q ss_pred             CC
Q 018414          241 DG  242 (356)
Q Consensus       241 ~~  242 (356)
                      ..
T Consensus       145 ~p  146 (462)
T PRK06416        145 RP  146 (462)
T ss_pred             CC
Confidence            64

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=99.31  E-value=3.9e-11  Score=121.88  Aligned_cols=136  Identities=21%  Similarity=0.247  Sum_probs=86.5

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCC-------------
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID-------------  156 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~-------------  156 (356)
                      .+||+|||||++|+++|+.|+++ |++|+|+||...+.....  +     ........+.|+++|+.             
T Consensus        10 ~~dV~IVGaGp~Gl~lA~~L~~~-G~~v~v~Er~~~~~~~~r--a-----~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~   81 (538)
T PRK06183         10 DTDVVIVGAGPVGLTLANLLGQY-GVRVLVLERWPTLYDLPR--A-----VGIDDEALRVLQAIGLADEVLPHTTPNHGM   81 (538)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCCCCCCc--e-----eeeCHHHHHHHHHcCChhHHHhhcccCCce
Confidence            58999999999999999999999 999999999875432110  0     01111122223332221             


Q ss_pred             -ccc-cC--------------CeE--EEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeeccc
Q 018414          157 -YDE-QD--------------NYV--VIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH  218 (356)
Q Consensus       157 -~~~-~~--------------~~~--~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~  218 (356)
                       |.. .+              .|+  ...+...+.+.|.+.+.+..|++++++++++++..+++.+.. ...+      .
T Consensus        82 ~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v-~~~~------~  154 (538)
T PRK06183         82 RFLDAKGRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTV-TLTD------A  154 (538)
T ss_pred             EEEcCCCCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEE-EEEc------C
Confidence             100 00              011  112334555667777765569999999999999988776543 2321      0


Q ss_pred             CCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414          219 DTQSCMDPNVMEAKVVVSSCGHDGPF  244 (356)
Q Consensus       219 ~~~~~g~~~~i~Ak~VI~AtGg~~~~  244 (356)
                          +|+..+++||+||.|+|.++.+
T Consensus       155 ----~G~~~~i~ad~vVgADG~~S~v  176 (538)
T PRK06183        155 ----DGQRETVRARYVVGCDGANSFV  176 (538)
T ss_pred             ----CCCEEEEEEEEEEecCCCchhH
Confidence                1234689999999999987643

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.30  E-value=4.9e-11  Score=121.46  Aligned_cols=41  Identities=32%  Similarity=0.595  Sum_probs=37.3

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~  130 (356)
                      .++||+|||+|++|+++|+.|+++ |++|+||||....||++
T Consensus         6 ~~~DvvVvG~G~aG~~aA~~aa~~-G~~v~llEk~~~~gG~~   46 (557)
T PRK07843          6 QEYDVVVVGSGAAGMVAALTAAHR-GLSTVVVEKAPHYGGST   46 (557)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHC-CCCEEEEeCCCCCCccc
Confidence            469999999999999999999999 99999999998777644

>PLN02507 glutathione reductase

Probab=99.30  E-value=2.1e-11  Score=122.63  Aligned_cols=137  Identities=22%  Similarity=0.237  Sum_probs=88.5

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEec---------cCCCCCccccCCccchhhhccchH----HHHHHHhCC
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQ---------SVSPGGGAWLGGQLFSAMVVRKPA----HIFLDELGI  155 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk---------~~~~Gg~~~~~g~~~~~~~~~~~~----~~~l~~~G~  155 (356)
                      .+|||+|||+|++|+.+|..|++. |++|+|||+         ...+||.|++.||++.+.+.....    .+...++|+
T Consensus        24 ~~yDvvVIG~GpaG~~aA~~a~~~-G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~  102 (499)
T PLN02507         24 YDFDLFVIGAGSGGVRAARFSANF-GAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGW  102 (499)
T ss_pred             cccCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCc
Confidence            369999999999999999999999 999999996         246899999999999888766532    234455676


Q ss_pred             CccccC--CeEE-EechHHHH---HHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEE
Q 018414          156 DYDEQD--NYVV-IKHAALFT---STIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVM  229 (356)
Q Consensus       156 ~~~~~~--~~~~-~~~~~~~~---~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i  229 (356)
                      ......  +|.. ..+.....   ...++.+.++.|++++.+ ++..+  +.+.+ .|...+            ++..++
T Consensus       103 ~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g-~a~~v--d~~~v-~V~~~~------------g~~~~~  166 (499)
T PLN02507        103 EINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEG-EGKIV--GPNEV-EVTQLD------------GTKLRY  166 (499)
T ss_pred             ccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEe--cCCEE-EEEeCC------------CcEEEE
Confidence            542211  1111 11111111   122334444679999887 44443  22332 222221            123468


Q ss_pred             EcCEEEEcCCCCC
Q 018414          230 EAKVVVSSCGHDG  242 (356)
Q Consensus       230 ~Ak~VI~AtGg~~  242 (356)
                      ++|+||+|||...
T Consensus       167 ~~d~LIIATGs~p  179 (499)
T PLN02507        167 TAKHILIATGSRA  179 (499)
T ss_pred             EcCEEEEecCCCC
Confidence            9999999999764

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=99.30  E-value=7.2e-11  Score=115.71  Aligned_cols=136  Identities=19%  Similarity=0.292  Sum_probs=86.7

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEecc-CCCCCccccCCccchhhhccchHHHHHHHhCCC----------cc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS-VSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID----------YD  158 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~-~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~----------~~  158 (356)
                      .+||+|||||++|+++|+.|++. |++|+|+|+. ....-+.. .+  ...........+.|+++|+.          +.
T Consensus         4 ~~dV~IvGaG~~Gl~~A~~L~~~-G~~v~viE~~~~~~~~~~~-~~--~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~   79 (405)
T PRK08850          4 SVDVAIIGGGMVGLALAAALKES-DLRIAVIEGQLPEEALNEL-PD--VRVSALSRSSEHILRNLGAWQGIEARRAAPYI   79 (405)
T ss_pred             cCCEEEECccHHHHHHHHHHHhC-CCEEEEEcCCCCcccccCC-CC--cceecccHHHHHHHHhCCchhhhhhhhCCccc
Confidence            48999999999999999999999 9999999996 22110000 00  00011122334444444431          00


Q ss_pred             ------cc--------------CCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeeccc
Q 018414          159 ------EQ--------------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH  218 (356)
Q Consensus       159 ------~~--------------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~  218 (356)
                            ..              ..+....+...+.+.|++.+.+..|++++++++|+++..+++.+. +...+       
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~-v~~~~-------  151 (405)
T PRK08850         80 AMEVWEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESEAW-LTLDN-------  151 (405)
T ss_pred             EEEEEeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEE-EEECC-------
Confidence                  00              001112234566678888887556899999999999987766543 43321       


Q ss_pred             CCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414          219 DTQSCMDPNVMEAKVVVSSCGHDGPF  244 (356)
Q Consensus       219 ~~~~~g~~~~i~Ak~VI~AtGg~~~~  244 (356)
                             +.+++||.||.|+|..+.+
T Consensus       152 -------g~~~~a~lvIgADG~~S~v  170 (405)
T PRK08850        152 -------GQALTAKLVVGADGANSWL  170 (405)
T ss_pred             -------CCEEEeCEEEEeCCCCChh
Confidence                   3579999999999977643

>PRK06834 hypothetical protein; Provisional

Probab=99.30  E-value=4.7e-11  Score=119.71  Aligned_cols=131  Identities=21%  Similarity=0.242  Sum_probs=82.9

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCC---------C----
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI---------D----  156 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~---------~----  156 (356)
                      ++||+|||||++|+++|+.|+++ |++|+||||...+.........+      .....+.|+++|+         .    
T Consensus         3 ~~dVlIVGaGp~Gl~lA~~La~~-G~~v~vlEr~~~~~~~~~Ra~~l------~~~s~~~L~~lGl~~~l~~~~~~~~~~   75 (488)
T PRK06834          3 EHAVVIAGGGPTGLMLAGELALA-GVDVAIVERRPNQELVGSRAGGL------HARTLEVLDQRGIADRFLAQGQVAQVT   75 (488)
T ss_pred             cceEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCCCCCCcceeeE------CHHHHHHHHHcCcHHHHHhcCCccccc
Confidence            48999999999999999999999 99999999986432100001111      1111222222222         0    


Q ss_pred             --------cccc---CCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCC
Q 018414          157 --------YDEQ---DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMD  225 (356)
Q Consensus       157 --------~~~~---~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~  225 (356)
                              +...   ..+........+.+.|.+.+. +.|++++++++++++..+++.+. +...              +
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~-~~gv~i~~~~~v~~v~~~~~~v~-v~~~--------------~  139 (488)
T PRK06834         76 GFAATRLDISDFPTRHNYGLALWQNHIERILAEWVG-ELGVPIYRGREVTGFAQDDTGVD-VELS--------------D  139 (488)
T ss_pred             eeeeEecccccCCCCCCccccccHHHHHHHHHHHHH-hCCCEEEcCCEEEEEEEcCCeEE-EEEC--------------C
Confidence                    0000   011112233455566666665 56999999999999998877554 3332              1


Q ss_pred             CeEEEcCEEEEcCCCCCC
Q 018414          226 PNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       226 ~~~i~Ak~VI~AtGg~~~  243 (356)
                      ..++++++||.|+|.++.
T Consensus       140 g~~i~a~~vVgADG~~S~  157 (488)
T PRK06834        140 GRTLRAQYLVGCDGGRSL  157 (488)
T ss_pred             CCEEEeCEEEEecCCCCC
Confidence            247999999999998774

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=99.30  E-value=5.3e-11  Score=114.53  Aligned_cols=148  Identities=18%  Similarity=0.210  Sum_probs=106.1

Q ss_pred             hHHHHHHHhCCCccccCC---eEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCC
Q 018414          145 PAHIFLDELGIDYDEQDN---YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQ  221 (356)
Q Consensus       145 ~~~~~l~~~G~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~  221 (356)
                      ..++|+.++|+++...++   ||...++..+.+.|...+. +.||+++++++|++|  +++. ..+.+..          
T Consensus        58 d~~~fF~~~Gi~~~~e~~grvfP~S~~A~sVv~~L~~~l~-~~gV~i~~~~~V~~i--~~~~-~~v~~~~----------  123 (376)
T TIGR03862        58 ALQDWARGLGIETFVGSSGRVFPVEMKAAPLLRAWLKRLA-EQGVQFHTRHRWIGW--QGGT-LRFETPD----------  123 (376)
T ss_pred             HHHHHHHHCCCceEECCCCEECCCCCCHHHHHHHHHHHHH-HCCCEEEeCCEEEEE--eCCc-EEEEECC----------
Confidence            356899999998766533   5567788999999999886 789999999999998  3333 3444421          


Q ss_pred             CCCCCeEEEcCEEEEcCCCCC--CCCC--ccchhhhccCc--ccccccccccccccccceee-eccccccCceeEeceEE
Q 018414          222 SCMDPNVMEAKVVVSSCGHDG--PFGA--TGVKRLKSIGM--IEEVPGMKALDMNSAEDAIV-RLTREVVPGMIVTGMEV  294 (356)
Q Consensus       222 ~~g~~~~i~Ak~VI~AtGg~~--~~~~--~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~-~~~~e~~~g~~~~~~~~  294 (356)
                         +...++||.||+||||.+  ..|.  ++++++.++||  .+++|+++++.++.. .++. .+     .|+.+....+
T Consensus       124 ---~~~~~~a~~vIlAtGG~s~p~~Gs~g~gy~la~~lGh~i~~~~PaL~pl~~~~~-~~~~~~L-----~Gv~~~~~~~  194 (376)
T TIGR03862       124 ---GQSTIEADAVVLALGGASWSQLGSDGAWQQVLDQRGVSVAPFAPANCGFLVDWS-AHFASRF-----AGEPLKRVNA  194 (376)
T ss_pred             ---CceEEecCEEEEcCCCccccccCCCcHHHHHHHHCCCcccCCcCeeceEEccCc-hhhHhhc-----CCCcccceEE
Confidence               124699999999999965  2232  78999999999  888999999665321 1221 23     7777765544


Q ss_pred             EEecCCcccCCccceee-----eehHHHHHH
Q 018414          295 AEIDGAPRMGPTFGAMM-----ISGQKAAHL  320 (356)
Q Consensus       295 ~~~~g~~~~~~~~g~~l-----~sG~~~~~l  320 (356)
                      .+  +. .  ..+|+++     +|||.++++
T Consensus       195 ~~--~~-~--~~~GellFTh~GiSGpavl~l  220 (376)
T TIGR03862       195 TA--GT-Q--QTRGEIVITARGLEGGLIYAL  220 (376)
T ss_pred             Ee--CC-e--eEeeeEEEECCCccHHHHHHH
Confidence            44  21 1  2358888     899999998

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=99.30  E-value=6.8e-11  Score=115.55  Aligned_cols=132  Identities=18%  Similarity=0.335  Sum_probs=85.0

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCC-CCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCC---------C----
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNP-NIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI---------D----  156 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~-G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~---------~----  156 (356)
                      |||+|||||++|+++|+.|+++. |++|+|+||.+.........+     ........+.|+++|+         +    
T Consensus         2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~-----~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~   76 (403)
T PRK07333          2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRA-----SAIAAAARRMLEALGVWDEIAPEAQPITDM   76 (403)
T ss_pred             CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcce-----EEecHHHHHHHHHCCChhhhhhhcCcccEE
Confidence            89999999999999999999981 399999999864211000000     0011112222222222         0    


Q ss_pred             -----------------ccc----cCCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeee
Q 018414          157 -----------------YDE----QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVS  215 (356)
Q Consensus       157 -----------------~~~----~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~  215 (356)
                                       +..    ...+....+...+.+.|++.+. +.|++++++++|+++..+++.+. +...     
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~-~~gv~v~~~~~v~~i~~~~~~v~-v~~~-----  149 (403)
T PRK07333         77 VITDSRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAE-ALGIDLREATSVTDFETRDEGVT-VTLS-----  149 (403)
T ss_pred             EEEeCCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHH-hCCCEEEcCCEEEEEEEcCCEEE-EEEC-----
Confidence                             000    0112223456778888888876 56999999999999988776553 3332     


Q ss_pred             cccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          216 MNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       216 ~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                               ++.++++|.||.|+|..+.
T Consensus       150 ---------~g~~~~ad~vI~AdG~~S~  168 (403)
T PRK07333        150 ---------DGSVLEARLLVAADGARSK  168 (403)
T ss_pred             ---------CCCEEEeCEEEEcCCCChH
Confidence                     1357899999999997764

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=99.30  E-value=6.5e-11  Score=117.26  Aligned_cols=139  Identities=18%  Similarity=0.338  Sum_probs=84.4

Q ss_pred             ccEEEECCCHHHHHHHHHhhc----CCCCeEEEEeccCCCCCcc--c--cCCc-cchhhhccchHHHHHHHhCCC-----
Q 018414           91 TDVVVVGAGSAGLSCAYELSK----NPNIQIAIIEQSVSPGGGA--W--LGGQ-LFSAMVVRKPAHIFLDELGID-----  156 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~----~~G~~V~llEk~~~~Gg~~--~--~~g~-~~~~~~~~~~~~~~l~~~G~~-----  156 (356)
                      |||+|||||++|+++|+.|++    + |++|+|||+.+.+.-..  +  ..+. ............+.|+++|+.     
T Consensus         1 ~DV~IVGaGp~Gl~~A~~La~~~~~~-G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~   79 (437)
T TIGR01989         1 FDVVIVGGGPVGLALAAALGNNPLTK-DLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQS   79 (437)
T ss_pred             CcEEEECCcHHHHHHHHHHhcCcccC-CCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhh
Confidence            699999999999999999998    7 99999999954322110  0  0000 001111122233333333320     


Q ss_pred             ---------------------cccc---CCeEEEechHHHHHHHHHHHHcCC--CcEEEcCeEEEEEEEe------CCeE
Q 018414          157 ---------------------YDEQ---DNYVVIKHAALFTSTIMSKLLARP--NVKLFNAVAAEDLIVK------GGRV  204 (356)
Q Consensus       157 ---------------------~~~~---~~~~~~~~~~~~~~~l~~~~~~~~--gv~i~~~~~v~~i~~~------~~~v  204 (356)
                                           |+..   ..+....+...+.+.|++.+.+..  +++++++++++++..+      ++..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~  159 (437)
T TIGR01989        80 DRIQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNW  159 (437)
T ss_pred             hcCCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCc
Confidence                                 1110   011223345677788888887555  6999999999999753      1212


Q ss_pred             EEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414          205 GGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF  244 (356)
Q Consensus       205 ~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~  244 (356)
                      ..+...              ++.+++||+||.|+|.+|.+
T Consensus       160 v~v~~~--------------~g~~i~a~llVgADG~~S~v  185 (437)
T TIGR01989       160 VHITLS--------------DGQVLYTKLLIGADGSNSNV  185 (437)
T ss_pred             eEEEEc--------------CCCEEEeeEEEEecCCCChh
Confidence            223332              23679999999999977643

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=99.29  E-value=8.8e-12  Score=123.74  Aligned_cols=131  Identities=23%  Similarity=0.300  Sum_probs=85.6

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchH-HHH---HHHhCCCcccc-CCeE
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA-HIF---LDELGIDYDEQ-DNYV  164 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~-~~~---l~~~G~~~~~~-~~~~  164 (356)
                      +|||+||||||+|++||+.|++. |++|+|+|+. .+||.|.+.||++.+.+..... .+.   ...+|+..... -+|.
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~-G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~   79 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANH-GAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDWK   79 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhC-CCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCHH
Confidence            59999999999999999999999 9999999995 7899999999999988766532 222   33455543211 1111


Q ss_pred             E-Eech----HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCC
Q 018414          165 V-IKHA----ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG  239 (356)
Q Consensus       165 ~-~~~~----~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtG  239 (356)
                      . ..+.    ..+... ++...++.|++++.+ ++..+.  .+.+. +. .              +...+++|+||+|||
T Consensus        80 ~~~~~~~~~~~~~~~~-~~~~l~~~gV~~~~g-~~~~v~--~~~v~-v~-~--------------~g~~~~~d~lIiATG  139 (446)
T TIGR01424        80 KLLQKKDDEIARLSGL-YKRLLANAGVELLEG-RARLVG--PNTVE-VL-Q--------------DGTTYTAKKILIAVG  139 (446)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHhCCcEEEEE-EEEEec--CCEEE-Ee-c--------------CCeEEEcCEEEEecC
Confidence            0 0111    122233 233334679999877 554442  22221 11 1              125789999999999


Q ss_pred             CCC
Q 018414          240 HDG  242 (356)
Q Consensus       240 g~~  242 (356)
                      ...
T Consensus       140 s~p  142 (446)
T TIGR01424       140 GRP  142 (446)
T ss_pred             CcC
Confidence            764

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=99.29  E-value=8.7e-11  Score=113.81  Aligned_cols=132  Identities=20%  Similarity=0.383  Sum_probs=85.1

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc--ccCCccchhhhccchHHHHHHHhCC----------C---
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA--WLGGQLFSAMVVRKPAHIFLDELGI----------D---  156 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~--~~~g~~~~~~~~~~~~~~~l~~~G~----------~---  156 (356)
                      ||+|||||++|+++|+.|+++ |++|+|+||...++-..  +.+..+    .......+.|+++|+          +   
T Consensus         1 dViIvGaG~aGl~~A~~L~~~-G~~v~v~Er~~~~~~~~~~~~~~~~----~l~~~~~~~l~~lGl~~~~~~~~~~~~~~   75 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARS-GLKIALIEATPAEAAATPGFDNRVS----ALSAASIRLLEKLGVWDKIEPDRAQPIRD   75 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcC-CCEEEEEeCCCccccCCCCCCccee----ecCHHHHHHHHHCCchhhhhhhcCCCceE
Confidence            799999999999999999999 99999999997653110  000000    011111222222222          1   


Q ss_pred             -------------cccc----CCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccC
Q 018414          157 -------------YDEQ----DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHD  219 (356)
Q Consensus       157 -------------~~~~----~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~  219 (356)
                                   +...    ..+....+...+.+.|++.+.+..+++++++++|+++..+++.+. +...+        
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~-v~~~~--------  146 (385)
T TIGR01988        76 IHVSDGGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVE-LTLDD--------  146 (385)
T ss_pred             EEEEeCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeE-EEECC--------
Confidence                         1000    011223445678888888887444499999999999988776553 43321        


Q ss_pred             CCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          220 TQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       220 ~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                            +.++.+|.||.|+|..+.
T Consensus       147 ------g~~~~~~~vi~adG~~S~  164 (385)
T TIGR01988       147 ------GQQLRARLLVGADGANSK  164 (385)
T ss_pred             ------CCEEEeeEEEEeCCCCCH
Confidence                  356999999999998764

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=99.29  E-value=8.6e-11  Score=114.67  Aligned_cols=135  Identities=20%  Similarity=0.212  Sum_probs=84.8

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCC--CCccccCCccchhhhccchHHHHHHHhCCC---------cc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSP--GGGAWLGGQLFSAMVVRKPAHIFLDELGID---------YD  158 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~--Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~---------~~  158 (356)
                      ++||+|||||++|+++|+.|++. |++|+|+||....  .+... .+      .......+.|+++|+.         ..
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~-G~~v~v~E~~~~~~~~~~~~-a~------~l~~~~~~~l~~lGl~~~l~~~~~~~~   73 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLA-GIDSVVLERRSREYVEGRIR-AG------VLEQGTVDLLREAGVGERMDREGLVHD   73 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhc-CCCEEEEEcCCccccccccc-ee------EECHhHHHHHHHcCChHHHHhcCCccC
Confidence            47999999999999999999999 9999999998642  11000 00      1122333444444431         00


Q ss_pred             -----ccC-------------CeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEE-eCCeEEEEEEcceeeecccC
Q 018414          159 -----EQD-------------NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIV-KGGRVGGVVTNWALVSMNHD  219 (356)
Q Consensus       159 -----~~~-------------~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~-~~~~v~gv~~~~~~~~~~~~  219 (356)
                           ..+             ......+...+.+.|++.+. +.|++++++++++++.. +++.+ .|....        
T Consensus        74 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~-~~gv~v~~~~~v~~i~~~~~~~~-~V~~~~--------  143 (392)
T PRK08243         74 GIELRFDGRRHRIDLTELTGGRAVTVYGQTEVTRDLMAARL-AAGGPIRFEASDVALHDFDSDRP-YVTYEK--------  143 (392)
T ss_pred             cEEEEECCEEEEeccccccCCceEEEeCcHHHHHHHHHHHH-hCCCeEEEeeeEEEEEecCCCce-EEEEEc--------
Confidence                 000             00111123456677777765 57999999999999876 33333 333321        


Q ss_pred             CCCCCCCeEEEcCEEEEcCCCCCCCC
Q 018414          220 TQSCMDPNVMEAKVVVSSCGHDGPFG  245 (356)
Q Consensus       220 ~~~~g~~~~i~Ak~VI~AtGg~~~~~  245 (356)
                         +|+..+++||+||.|+|..|.+.
T Consensus       144 ---~G~~~~i~ad~vVgADG~~S~vR  166 (392)
T PRK08243        144 ---DGEEHRLDCDFIAGCDGFHGVSR  166 (392)
T ss_pred             ---CCeEEEEEeCEEEECCCCCCchh
Confidence               12346799999999999887543

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=99.28  E-value=1.1e-10  Score=113.90  Aligned_cols=135  Identities=22%  Similarity=0.337  Sum_probs=84.1

Q ss_pred             ccEEEECCCHHHHHHHHHhhcC-CCCeEEEEeccCCCCC-ccccC-Ccc-----ch------hhhccc--hHHHHHHHhC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGG-GAWLG-GQL-----FS------AMVVRK--PAHIFLDELG  154 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~-~G~~V~llEk~~~~Gg-~~~~~-g~~-----~~------~~~~~~--~~~~~l~~~G  154 (356)
                      +||+|||||++|+++|++|+++ +|++|+|+||...++. .++.. |.+     +.      .+....  ...++.++++
T Consensus         3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~~~aS~~~~g~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   82 (393)
T PRK11728          3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPARHQTGHNSGVIHAGVYYTPGSLKARFCRRGNEATKAFCDQHG   82 (393)
T ss_pred             ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCcccccccccCcceEccccccCcHHHHHHHHHHHHHHHHHHHHHcC
Confidence            8999999999999999999984 5899999999865432 22211 111     00      000000  0012222333


Q ss_pred             CCccccCCeE---------------------------------------------------EEechHHHHHHHHHHHHcC
Q 018414          155 IDYDEQDNYV---------------------------------------------------VIKHAALFTSTIMSKLLAR  183 (356)
Q Consensus       155 ~~~~~~~~~~---------------------------------------------------~~~~~~~~~~~l~~~~~~~  183 (356)
                      ++|...+.+.                                                   -..+...+.+.|.+.+. +
T Consensus        83 ~~~~~~G~l~~~~~~~~~~~l~~~~~~~~~~g~~~~~l~~~el~~~~P~l~~~~al~~p~~g~vd~~~l~~aL~~~~~-~  161 (393)
T PRK11728         83 IPYEECGKLLVATSELELERMEALYERARANGIEVERLDAEELREREPNIRGLGAIFVPSTGIVDYRAVAEAMAELIQ-A  161 (393)
T ss_pred             CCcccCCEEEEEcCHHHHHHHHHHHHHHHHCCCcEEEeCHHHHHHhCCCccccceEEcCCceEECHHHHHHHHHHHHH-h
Confidence            3332111100                                                   01234566677777776 6


Q ss_pred             CCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          184 PNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       184 ~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      .|++++++++|+++..+++.+ .+.+.               ..+++++.||+|+|.++
T Consensus       162 ~Gv~i~~~~~V~~i~~~~~~~-~V~~~---------------~g~i~ad~vV~A~G~~s  204 (393)
T PRK11728        162 RGGEIRLGAEVTALDEHANGV-VVRTT---------------QGEYEARTLINCAGLMS  204 (393)
T ss_pred             CCCEEEcCCEEEEEEecCCeE-EEEEC---------------CCEEEeCEEEECCCcch
Confidence            799999999999998776654 34442               13699999999999765

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=99.28  E-value=4.8e-11  Score=118.91  Aligned_cols=54  Identities=33%  Similarity=0.471  Sum_probs=48.8

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhcc
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVR  143 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~  143 (356)
                      .+|||+|||||++|+.+|+.|++. |++|+|+|+...+||.|++.||++.+.+..
T Consensus         4 ~~yDvvVIGaGpaG~~aA~~la~~-G~~v~liE~~~~~GG~~~~~gcipsk~l~~   57 (461)
T PRK05249          4 YDYDLVVIGSGPAGEGAAMQAAKL-GKRVAVIERYRNVGGGCTHTGTIPSKALRE   57 (461)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhC-CCEEEEEeccccccccccccCCCCHHHHHH
Confidence            469999999999999999999999 999999999888999999999988766543

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=99.28  E-value=1.6e-11  Score=122.82  Aligned_cols=138  Identities=15%  Similarity=0.245  Sum_probs=87.3

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchH-HH---HHHHhCCCcccc-CCeE
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA-HI---FLDELGIDYDEQ-DNYV  164 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~-~~---~l~~~G~~~~~~-~~~~  164 (356)
                      .|||+|||||++|+.+|+.|++. |++|+|+|+. .+||+|.+.||++.+.+..... .+   ....+|+..... .+|.
T Consensus         4 ~ydvvVIG~GpaG~~aA~~aa~~-G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~   81 (472)
T PRK05976          4 EYDLVIIGGGPGGYVAAIRAGQL-GLKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALDFA   81 (472)
T ss_pred             cccEEEECCCHHHHHHHHHHHhC-CCeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccCHH
Confidence            59999999999999999999999 9999999996 7899999999999887765422 22   233455543211 1111


Q ss_pred             EE-echHHHHHHH---HHHHHcCCCcEEEcCeEEEEEEEe----CCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEE
Q 018414          165 VI-KHAALFTSTI---MSKLLARPNVKLFNAVAAEDLIVK----GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVS  236 (356)
Q Consensus       165 ~~-~~~~~~~~~l---~~~~~~~~gv~i~~~~~v~~i~~~----~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~  236 (356)
                      .. .+...+.+.+   +..+.++.|++++.+ .++.+..+    +++-..|...+            ++..++++|+||+
T Consensus        82 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g-~a~~i~~~~~~~~~~~~~v~~~~------------g~~~~~~~d~lVi  148 (472)
T PRK05976         82 KVQERKDGIVDRLTKGVAALLKKGKIDVFHG-IGRILGPSIFSPMPGTVSVETET------------GENEMIIPENLLI  148 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEeCCCCCcCCceEEEEEeCC------------CceEEEEcCEEEE
Confidence            11 1112222222   223334679999998 44444322    01122232221            1235799999999


Q ss_pred             cCCCCC
Q 018414          237 SCGHDG  242 (356)
Q Consensus       237 AtGg~~  242 (356)
                      |||...
T Consensus       149 ATGs~p  154 (472)
T PRK05976        149 ATGSRP  154 (472)
T ss_pred             eCCCCC
Confidence            999765

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=99.28  E-value=1.6e-11  Score=114.84  Aligned_cols=137  Identities=25%  Similarity=0.332  Sum_probs=93.5

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCc-------cccCC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDY-------DEQDN  162 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~-------~~~~~  162 (356)
                      .+||||||+|.+|.+.|+.|++. |.||.||||.-..-       .....-+.+......|.++|+.-       ++..+
T Consensus        45 ~~DvIIVGAGV~GsaLa~~L~kd-GRrVhVIERDl~EP-------dRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~G  116 (509)
T KOG1298|consen   45 AADVIIVGAGVAGSALAYALAKD-GRRVHVIERDLSEP-------DRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTG  116 (509)
T ss_pred             cccEEEECCcchHHHHHHHHhhC-CcEEEEEecccccc-------hHHHHHhcCcchhHHHHHhCHHHHhhcccceEeee
Confidence            58999999999999999999999 99999999974210       00000111122223333333310       00000


Q ss_pred             -------------eE----------EEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccC
Q 018414          163 -------------YV----------VIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHD  219 (356)
Q Consensus       163 -------------~~----------~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~  219 (356)
                                   |+          ..-|...|.+.|.+++...+||++..+ .|.++..+++.|.||...+      . 
T Consensus       117 y~ifk~gk~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeG-tV~sLlee~gvvkGV~yk~------k-  188 (509)
T KOG1298|consen  117 YAIFKDGKEVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEG-TVKSLLEEEGVVKGVTYKN------K-  188 (509)
T ss_pred             eEEEeCCceeeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEeee-eHHHHHhccCeEEeEEEec------C-
Confidence                         11          122557888999999988999999988 7889999999999998853      1 


Q ss_pred             CCCCCCCeEEEcCEEEEcCCCCCCCC
Q 018414          220 TQSCMDPNVMEAKVVVSSCGHDGPFG  245 (356)
Q Consensus       220 ~~~~g~~~~i~Ak~VI~AtGg~~~~~  245 (356)
                         .++..+..|...|+|+|.++.+.
T Consensus       189 ---~gee~~~~ApLTvVCDGcfSnlR  211 (509)
T KOG1298|consen  189 ---EGEEVEAFAPLTVVCDGCFSNLR  211 (509)
T ss_pred             ---CCceEEEecceEEEecchhHHHH
Confidence               12347788999999999887433

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=99.28  E-value=8.7e-11  Score=113.97  Aligned_cols=133  Identities=24%  Similarity=0.340  Sum_probs=84.6

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCC-CeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCC---------cc---
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPN-IQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID---------YD---  158 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G-~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~---------~~---  158 (356)
                      ||+|||||++|+++|+.|+++ | ++|+|+||...+.-..  ++ ............+.|+++|+.         ..   
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~-G~~~v~v~E~~~~~~~~~--~~-~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~   76 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRL-GKIKIALIEANSPSAAQP--GF-DARSLALSYGSKQILEKLGLWPKLAPFATPILDIH   76 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcC-CCceEEEEeCCCccccCC--CC-CCeeEeccHHHHHHHHHCCChhhhHhhcCccceEE
Confidence            799999999999999999999 9 9999999986543210  00 000000111112233333321         00   


Q ss_pred             --cc---------------CCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCC
Q 018414          159 --EQ---------------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQ  221 (356)
Q Consensus       159 --~~---------------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~  221 (356)
                        ..               ....+..+...+.+.|.+.+.+..|++++++++|+++..+++.+. +...+          
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~-v~~~~----------  145 (382)
T TIGR01984        77 VSDQGHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVR-VTLDN----------  145 (382)
T ss_pred             EEcCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEE-EEECC----------
Confidence              00               000122345678888888886446999999999999987776543 33321          


Q ss_pred             CCCCCeEEEcCEEEEcCCCCCC
Q 018414          222 SCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       222 ~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                          ..+++||.||.|+|..+.
T Consensus       146 ----g~~~~ad~vV~AdG~~S~  163 (382)
T TIGR01984       146 ----GQQLRAKLLIAADGANSK  163 (382)
T ss_pred             ----CCEEEeeEEEEecCCChH
Confidence                357999999999997763

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=99.27  E-value=1.3e-10  Score=118.21  Aligned_cols=135  Identities=22%  Similarity=0.324  Sum_probs=85.5

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCC---------Ccc-
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI---------DYD-  158 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~---------~~~-  158 (356)
                      ..+||+|||||++|+++|+.|+++ |++|+|+||...+....-       .........+.|+++|+         .+. 
T Consensus        22 ~~~dVlIVGaGpaGl~lA~~L~~~-G~~v~viE~~~~~~~~~r-------a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~   93 (547)
T PRK08132         22 ARHPVVVVGAGPVGLALAIDLAQQ-GVPVVLLDDDDTLSTGSR-------AICFAKRSLEIFDRLGCGERMVDKGVSWNV   93 (547)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhC-CCcEEEEeCCCCCCCCCe-------EEEEcHHHHHHHHHcCCcHHHHhhCceeec
Confidence            468999999999999999999999 999999999875432110       00111122223333222         110 


Q ss_pred             -----c---------c----CCe--EEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeeccc
Q 018414          159 -----E---------Q----DNY--VVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH  218 (356)
Q Consensus       159 -----~---------~----~~~--~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~  218 (356)
                           .         .    ..+  ....+...+.+.|.+.+.+..+++++++++++++..+++.+.. ....       
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v-~~~~-------  165 (547)
T PRK08132         94 GKVFLRDEEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTL-TVET-------  165 (547)
T ss_pred             eeEEeCCCeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEE-EEEC-------
Confidence                 0         0    001  1112334566777777765568999999999999887765542 2211       


Q ss_pred             CCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          219 DTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       219 ~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      .+    ...++++|+||.|+|.++.
T Consensus       166 ~~----g~~~i~ad~vVgADG~~S~  186 (547)
T PRK08132        166 PD----GPYTLEADWVIACDGARSP  186 (547)
T ss_pred             CC----CcEEEEeCEEEECCCCCcH
Confidence            00    1247999999999998764

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=99.27  E-value=1.9e-10  Score=114.06  Aligned_cols=145  Identities=18%  Similarity=0.235  Sum_probs=83.5

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccc----hHH-HHHHHh------CC--C
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRK----PAH-IFLDEL------GI--D  156 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~----~~~-~~l~~~------G~--~  156 (356)
                      +|||+||||||+|+++|+.|+++ |++|+|+||..... .. .++.+....+...    ... ..+...      +.  .
T Consensus        39 ~~DViIVGaGPAG~~aA~~LA~~-G~~VlllEr~~~~~-k~-cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~  115 (450)
T PLN00093         39 KLRVAVIGGGPAGACAAETLAKG-GIETFLIERKLDNA-KP-CGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVD  115 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCCCC-CC-ccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEE
Confidence            59999999999999999999999 99999999975321 11 1222221111110    000 111111      11  1


Q ss_pred             ccc---cCCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeC--CeEEEEEEcceeeecccCCCCCCCCeEEEc
Q 018414          157 YDE---QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG--GRVGGVVTNWALVSMNHDTQSCMDPNVMEA  231 (356)
Q Consensus       157 ~~~---~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~--~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A  231 (356)
                      +..   ...|....+...+.+.|.+++. +.|++++.+ .++++..++  +....+.+...     ......++..+++|
T Consensus       116 ~~~~~~~~~~~~~v~R~~~d~~L~~~A~-~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~-----~~~~~~g~~~~v~a  188 (450)
T PLN00093        116 IGKTLKPHEYIGMVRREVLDSFLRERAQ-SNGATLING-LFTRIDVPKDPNGPYVIHYTSY-----DSGSGAGTPKTLEV  188 (450)
T ss_pred             ecccCCCCCeEEEecHHHHHHHHHHHHH-HCCCEEEec-eEEEEEeccCCCCcEEEEEEec-----cccccCCCccEEEe
Confidence            111   0123334566788888888876 579999876 577776432  22223333210     00000123467999


Q ss_pred             CEEEEcCCCCCCC
Q 018414          232 KVVVSSCGHDGPF  244 (356)
Q Consensus       232 k~VI~AtGg~~~~  244 (356)
                      |.||.|+|..+.+
T Consensus       189 ~~VIgADG~~S~v  201 (450)
T PLN00093        189 DAVIGADGANSRV  201 (450)
T ss_pred             CEEEEcCCcchHH
Confidence            9999999977643

>PRK07236 hypothetical protein; Provisional

Probab=99.26  E-value=1.1e-10  Score=113.70  Aligned_cols=131  Identities=18%  Similarity=0.202  Sum_probs=83.3

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCcccc---------
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQ---------  160 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~---------  160 (356)
                      .+||+|||||++|+++|+.|+++ |++|+|+||.+.....  .++.    +.......+.|+++|+.-...         
T Consensus         6 ~~~ViIVGaG~aGl~~A~~L~~~-G~~v~v~E~~~~~~~~--~g~g----i~l~~~~~~~l~~lg~~~~~~~~~~~~~~~   78 (386)
T PRK07236          6 GPRAVVIGGSLGGLFAALLLRRA-GWDVDVFERSPTELDG--RGAG----IVLQPELLRALAEAGVALPADIGVPSRERI   78 (386)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhC-CCCEEEEecCCCCcCC--CCce----eEeCHHHHHHHHHcCCCcccccccCccceE
Confidence            58999999999999999999999 9999999998642110  0110    112233456666666531100         


Q ss_pred             -----CCeE-------EEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeE
Q 018414          161 -----DNYV-------VIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNV  228 (356)
Q Consensus       161 -----~~~~-------~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~  228 (356)
                           +...       ...+...+.+.|++.+   .+++++++++|+++..+++.+. +...+              +.+
T Consensus        79 ~~~~~g~~~~~~~~~~~~~~~~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~-v~~~~--------------g~~  140 (386)
T PRK07236         79 YLDRDGRVVQRRPMPQTQTSWNVLYRALRAAF---PAERYHLGETLVGFEQDGDRVT-ARFAD--------------GRR  140 (386)
T ss_pred             EEeCCCCEeeccCCCccccCHHHHHHHHHHhC---CCcEEEcCCEEEEEEecCCeEE-EEECC--------------CCE
Confidence                 0000       0012233344444322   4578999999999988776654 33331              357


Q ss_pred             EEcCEEEEcCCCCCCCC
Q 018414          229 MEAKVVVSSCGHDGPFG  245 (356)
Q Consensus       229 i~Ak~VI~AtGg~~~~~  245 (356)
                      +++|.||.|+|..|.+.
T Consensus       141 ~~ad~vIgADG~~S~vR  157 (386)
T PRK07236        141 ETADLLVGADGGRSTVR  157 (386)
T ss_pred             EEeCEEEECCCCCchHH
Confidence            99999999999887543

>PRK08163 salicylate hydroxylase; Provisional

Probab=99.25  E-value=1.2e-10  Score=113.53  Aligned_cols=132  Identities=23%  Similarity=0.330  Sum_probs=86.8

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCC---------c---
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID---------Y---  157 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~---------~---  157 (356)
                      ..||+|||||++|+++|+.|++. |++|+|+||.+.++....  +     ........+.|+++|+.         .   
T Consensus         4 ~~~V~IvGaGiaGl~~A~~L~~~-g~~v~v~Er~~~~~~~g~--g-----i~l~~~~~~~l~~lg~~~~~~~~~~~~~~~   75 (396)
T PRK08163          4 VTPVLIVGGGIGGLAAALALARQ-GIKVKLLEQAAEIGEIGA--G-----IQLGPNAFSALDALGVGEAARQRAVFTDHL   75 (396)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhC-CCcEEEEeeCcccccccc--e-----eeeCchHHHHHHHcCChHHHHhhccCCcce
Confidence            47999999999999999999999 999999999876542110  0     01111222233333220         0   


Q ss_pred             ---cc-c----------------CCe-EEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeec
Q 018414          158 ---DE-Q----------------DNY-VVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSM  216 (356)
Q Consensus       158 ---~~-~----------------~~~-~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~  216 (356)
                         +. .                ... ....+...+.+.|++.+.+..+++++++++++++..+++.+. +...      
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~-v~~~------  148 (396)
T PRK08163         76 TMMDAVDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVT-VFDQ------  148 (396)
T ss_pred             EEEeCCCCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceE-EEEc------
Confidence               00 0                000 123355677788888876555699999999999987766544 3332      


Q ss_pred             ccCCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414          217 NHDTQSCMDPNVMEAKVVVSSCGHDGPF  244 (356)
Q Consensus       217 ~~~~~~~g~~~~i~Ak~VI~AtGg~~~~  244 (356)
                              ++.++.||.||.|+|.++..
T Consensus       149 --------~g~~~~ad~vV~AdG~~S~~  168 (396)
T PRK08163        149 --------QGNRWTGDALIGCDGVKSVV  168 (396)
T ss_pred             --------CCCEEecCEEEECCCcChHH
Confidence                    13579999999999987743

>PRK06116 glutathione reductase; Validated

Probab=99.25  E-value=2.4e-11  Score=120.79  Aligned_cols=129  Identities=19%  Similarity=0.242  Sum_probs=84.1

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchH-HHH----HHHhCCCcccc-CCe
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA-HIF----LDELGIDYDEQ-DNY  163 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~-~~~----l~~~G~~~~~~-~~~  163 (356)
                      +|||+|||||++|++||+.|++. |++|+|+|+. .+||.|.+.||++.+.+..... .+.    ...+|+..... .+|
T Consensus         4 ~~DvvVIG~GpaG~~aA~~~a~~-G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~   81 (450)
T PRK06116          4 DYDLIVIGGGSGGIASANRAAMY-GAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFDW   81 (450)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHC-CCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcCH
Confidence            59999999999999999999999 9999999996 7899999999999987766532 222    23355543211 111


Q ss_pred             EEEe-ch----HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcC
Q 018414          164 VVIK-HA----ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSC  238 (356)
Q Consensus       164 ~~~~-~~----~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~At  238 (356)
                      .... ..    ..+... +++..++.|++++.++ ++.+  +...   +.+.               ..++++|+||+||
T Consensus        82 ~~~~~~~~~~~~~~~~~-~~~~l~~~gv~~~~g~-~~~v--~~~~---v~~~---------------g~~~~~d~lViAT  139 (450)
T PRK06116         82 AKLIANRDAYIDRLHGS-YRNGLENNGVDLIEGF-ARFV--DAHT---VEVN---------------GERYTADHILIAT  139 (450)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHhCCCEEEEEE-EEEc--cCCE---EEEC---------------CEEEEeCEEEEec
Confidence            1100 00    111222 2233346799998884 4433  2222   2221               2569999999999


Q ss_pred             CCCC
Q 018414          239 GHDG  242 (356)
Q Consensus       239 Gg~~  242 (356)
                      |...
T Consensus       140 Gs~p  143 (450)
T PRK06116        140 GGRP  143 (450)
T ss_pred             CCCC
Confidence            9764

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=99.23  E-value=9.7e-11  Score=117.27  Aligned_cols=140  Identities=19%  Similarity=0.259  Sum_probs=86.7

Q ss_pred             cccEEEECCCHHHHHHHHHhhc-CCCCeEEEEecc--------CCCCCccccCCccchhhhccchH-HHHH---HHhCCC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSK-NPNIQIAIIEQS--------VSPGGGAWLGGQLFSAMVVRKPA-HIFL---DELGID  156 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~-~~G~~V~llEk~--------~~~Gg~~~~~g~~~~~~~~~~~~-~~~l---~~~G~~  156 (356)
                      +|||+|||+|++|..+|+.+++ . |++|+|||+.        ..+||+|.+.||++.+.+..... .+.+   ..+|+.
T Consensus         3 ~~DviVIG~G~~G~~aA~~aa~~~-g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~   81 (486)
T TIGR01423         3 AFDLVVIGAGSGGLEAGWNAATLY-KKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWE   81 (486)
T ss_pred             ccCEEEECCChHHHHHHHHHHHhc-CCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCee
Confidence            5999999999999999999999 5 8999999984        46899999999999998877642 2333   345654


Q ss_pred             cccc---CCeEE-EechHHHHHHH---HHHHHcC-CCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeE
Q 018414          157 YDEQ---DNYVV-IKHAALFTSTI---MSKLLAR-PNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNV  228 (356)
Q Consensus       157 ~~~~---~~~~~-~~~~~~~~~~l---~~~~~~~-~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~  228 (356)
                      ....   -+|.. ..+...+...+   +....++ .|++++.+..   ...+++.+ .|...        .++...+..+
T Consensus        82 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a---~f~~~~~v-~V~~~--------~~~~~~~~~~  149 (486)
T TIGR01423        82 FDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWG---ALEDKNVV-LVRES--------ADPKSAVKER  149 (486)
T ss_pred             ccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEE---EEccCCEE-EEeec--------cCCCCCcceE
Confidence            3211   11211 11222222222   1222334 5899998852   22233332 22211        0000011357


Q ss_pred             EEcCEEEEcCCCCC
Q 018414          229 MEAKVVVSSCGHDG  242 (356)
Q Consensus       229 i~Ak~VI~AtGg~~  242 (356)
                      +++|+||+|||+..
T Consensus       150 ~~~d~lIIATGs~p  163 (486)
T TIGR01423       150 LQAEHILLATGSWP  163 (486)
T ss_pred             EECCEEEEecCCCC
Confidence            99999999999765

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=99.23  E-value=2.1e-10  Score=114.30  Aligned_cols=36  Identities=28%  Similarity=0.591  Sum_probs=32.7

Q ss_pred             cccEEEECCCHHHHHHHHHhhcC-CCCeEEEEeccCC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVS  125 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~-~G~~V~llEk~~~  125 (356)
                      ++||+|||||++|+++|++|+++ ||.+|+|||++..
T Consensus        24 ~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~   60 (460)
T TIGR03329        24 QADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLC   60 (460)
T ss_pred             eeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCcc
Confidence            58999999999999999999985 5899999999754

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=99.23  E-value=2.1e-10  Score=110.74  Aligned_cols=35  Identities=34%  Similarity=0.675  Sum_probs=32.5

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSP  126 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~  126 (356)
                      |||+|||||++|+++|++|+++ |.+|+|||+....
T Consensus         1 ~dv~IIG~Gi~G~s~A~~L~~~-G~~V~vle~~~~~   35 (365)
T TIGR03364         1 YDLIIVGAGILGLAHAYAAARR-GLSVTVIERSSRA   35 (365)
T ss_pred             CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCCC
Confidence            5999999999999999999999 9999999998643

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PLN02697 lycopene epsilon cyclase

Probab=99.23  E-value=9.5e-11  Score=117.82  Aligned_cols=133  Identities=14%  Similarity=0.225  Sum_probs=82.8

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHH-h---CCCcccc----
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDE-L---GIDYDEQ----  160 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~-~---G~~~~~~----  160 (356)
                      ..|||+|||||++|+++|+.|++. |++|+|||+....... |   +++...+......+.+.. +   -+.+...    
T Consensus       107 ~~~DVvIVGaGPAGLalA~~Lak~-Gl~V~LIe~~~p~~~n-~---GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~  181 (529)
T PLN02697        107 GTLDLVVIGCGPAGLALAAESAKL-GLNVGLIGPDLPFTNN-Y---GVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIM  181 (529)
T ss_pred             CcccEEEECcCHHHHHHHHHHHhC-CCcEEEecCcccCCCc-c---ccchhHHHhcCcHHHHHhhcCCcEEEecCCceee
Confidence            359999999999999999999999 9999999986432211 1   111111100000011111 1   0001100    


Q ss_pred             -CCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCC
Q 018414          161 -DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG  239 (356)
Q Consensus       161 -~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtG  239 (356)
                       ...+...+...+.+.|++++. +.|+++ .+++|+++..+++.+..+.+.              +..+++|+.||+|+|
T Consensus       182 ~~~~Yg~V~R~~L~~~Ll~~a~-~~GV~~-~~~~V~~I~~~~~~~~vv~~~--------------dG~~i~A~lVI~AdG  245 (529)
T PLN02697        182 IGRAYGRVSRTLLHEELLRRCV-ESGVSY-LSSKVDRITEASDGLRLVACE--------------DGRVIPCRLATVASG  245 (529)
T ss_pred             ccCcccEEcHHHHHHHHHHHHH-hcCCEE-EeeEEEEEEEcCCcEEEEEEc--------------CCcEEECCEEEECCC
Confidence             011112456778888888886 579998 566999988766655444443              136799999999999


Q ss_pred             CCC
Q 018414          240 HDG  242 (356)
Q Consensus       240 g~~  242 (356)
                      ..+
T Consensus       246 ~~S  248 (529)
T PLN02697        246 AAS  248 (529)
T ss_pred             cCh
Confidence            877

>TIGR02028 ChlP geranylgeranyl reductase

Probab=99.23  E-value=2.1e-10  Score=112.29  Aligned_cols=144  Identities=19%  Similarity=0.240  Sum_probs=83.6

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccch-HHHHHH----Hh------CCC--c
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKP-AHIFLD----EL------GID--Y  157 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~-~~~~l~----~~------G~~--~  157 (356)
                      +||+||||||+|++||+.|++. |++|+||||....+..|  ++.+....+.... ..+++.    ..      +..  +
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~-G~~V~llE~~~~~~~~c--g~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~   77 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASA-GIQTFLLERKPDNAKPC--GGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDI   77 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhC-CCcEEEEecCCCCCCCc--cccccHhhHhhccCchhHHHhhhceeEEecCCceEEEe
Confidence            5899999999999999999999 99999999986443222  3333222221110 001111    10      000  1


Q ss_pred             cc---cCCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEe--CCeEEEEEEcceeeecccCCCCCCCCeEEEcC
Q 018414          158 DE---QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK--GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAK  232 (356)
Q Consensus       158 ~~---~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~--~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak  232 (356)
                      ..   ...|....+...|.+.|.+++. +.|++++.++ ++++...  .+...++....    . ..+...++..+++||
T Consensus        78 ~~~~~~~~~~~~v~R~~~d~~L~~~a~-~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~----~-~~~~~~g~~~~i~a~  150 (398)
T TIGR02028        78 GRTLKEHEYIGMLRREVLDSFLRRRAA-DAGATLINGL-VTKLSLPADADDPYTLHYIS----S-DSGGPSGTRCTLEVD  150 (398)
T ss_pred             ccCCCCCCceeeeeHHHHHHHHHHHHH-HCCcEEEcce-EEEEEeccCCCceEEEEEee----c-cccccCCCccEEEeC
Confidence            10   0122223455777778888876 6799998885 7776532  23333444311    0 000001234679999


Q ss_pred             EEEEcCCCCCCC
Q 018414          233 VVVSSCGHDGPF  244 (356)
Q Consensus       233 ~VI~AtGg~~~~  244 (356)
                      .||.|+|..+.+
T Consensus       151 ~VIgADG~~S~v  162 (398)
T TIGR02028       151 AVIGADGANSRV  162 (398)
T ss_pred             EEEECCCcchHH
Confidence            999999987744

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK07588 hypothetical protein; Provisional

Probab=99.22  E-value=2.9e-10  Score=110.81  Aligned_cols=127  Identities=15%  Similarity=0.117  Sum_probs=82.0

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCC--ccccCCccchhhhccchHHHHHHHhCC---------Cccc-
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG--GAWLGGQLFSAMVVRKPAHIFLDELGI---------DYDE-  159 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg--~~~~~g~~~~~~~~~~~~~~~l~~~G~---------~~~~-  159 (356)
                      ||+|||||++|+++|+.|+++ |++|+|+||.+....  ..+.         ......+.|+++|+         ++.. 
T Consensus         2 ~V~IVGgG~aGl~~A~~L~~~-G~~v~v~E~~~~~~~~g~~~~---------l~~~~~~~l~~lGl~~~l~~~~~~~~~~   71 (391)
T PRK07588          2 KVAISGAGIAGPTLAYWLRRY-GHEPTLIERAPELRTGGYMVD---------FWGVGYEVAKRMGITDQLREAGYQIEHV   71 (391)
T ss_pred             eEEEECccHHHHHHHHHHHHC-CCceEEEeCCCCccCCCeEEe---------ccCcHHHHHHHcCCHHHHHhccCCccce
Confidence            799999999999999999999 999999999865421  1110         00111122222221         1100 


Q ss_pred             -----c----------------CCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeeccc
Q 018414          160 -----Q----------------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH  218 (356)
Q Consensus       160 -----~----------------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~  218 (356)
                           .                +......+...+.+.|++.+  ..+++++++++|+++..+++.+. +...+       
T Consensus        72 ~~~~~~g~~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~--~~~v~i~~~~~v~~i~~~~~~v~-v~~~~-------  141 (391)
T PRK07588         72 RSVDPTGRRKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAI--DGQVETIFDDSIATIDEHRDGVR-VTFER-------  141 (391)
T ss_pred             EEEcCCCCEEEEecHHHccccCCCceEEEEHHHHHHHHHHhh--hcCeEEEeCCEEeEEEECCCeEE-EEECC-------
Confidence                 0                00112334456667776654  34799999999999988777654 33331       


Q ss_pred             CCCCCCCCeEEEcCEEEEcCCCCCCCC
Q 018414          219 DTQSCMDPNVMEAKVVVSSCGHDGPFG  245 (356)
Q Consensus       219 ~~~~~g~~~~i~Ak~VI~AtGg~~~~~  245 (356)
                             +.++++|.||.|+|..|...
T Consensus       142 -------g~~~~~d~vIgADG~~S~vR  161 (391)
T PRK07588        142 -------GTPRDFDLVIGADGLHSHVR  161 (391)
T ss_pred             -------CCEEEeCEEEECCCCCccch
Confidence                   35679999999999887654

>PRK13748 putative mercuric reductase; Provisional

Probab=99.22  E-value=1.4e-10  Score=118.37  Aligned_cols=55  Identities=24%  Similarity=0.417  Sum_probs=50.1

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccch
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKP  145 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~  145 (356)
                      .+|||+|||||++|+.+|+.|++. |++|+|||+. .+||+|.+.||++.+.+....
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~~-G~~v~lie~~-~~GG~c~n~gciPsk~l~~~~  151 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVEQ-GARVTLIERG-TIGGTCVNVGCVPSKIMIRAA  151 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhC-CCeEEEEecC-cceeeccccCccccHHHHHHH
Confidence            369999999999999999999999 9999999998 789999999999988776553

>PRK06847 hypothetical protein; Provisional

Probab=99.22  E-value=2.2e-10  Score=110.87  Aligned_cols=131  Identities=18%  Similarity=0.146  Sum_probs=83.1

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhC---------CCcc--
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELG---------IDYD--  158 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G---------~~~~--  158 (356)
                      ..||+|||||++|+++|+.|++. |++|+|+|+...+....  .+..     ......+.|+++|         .+..  
T Consensus         4 ~~~V~IVGaG~aGl~~A~~L~~~-g~~v~v~E~~~~~~~~g--~g~~-----l~~~~~~~l~~~gl~~~~~~~~~~~~~~   75 (375)
T PRK06847          4 VKKVLIVGGGIGGLSAAIALRRA-GIAVDLVEIDPEWRVYG--AGIT-----LQGNALRALRELGVLDECLEAGFGFDGV   75 (375)
T ss_pred             cceEEEECCCHHHHHHHHHHHhC-CCCEEEEecCCCCccCC--ceee-----ecHHHHHHHHHcCCHHHHHHhCCCccce
Confidence            36999999999999999999999 99999999986542110  0000     0111111222222         1111  


Q ss_pred             ----ccCC--------------e--EEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeeccc
Q 018414          159 ----EQDN--------------Y--VVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH  218 (356)
Q Consensus       159 ----~~~~--------------~--~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~  218 (356)
                          ..+.              +  ....+...+.+.|.+.+. +.|++++++++++++..+++.+. +...+       
T Consensus        76 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~-~~gv~v~~~~~v~~i~~~~~~~~-v~~~~-------  146 (375)
T PRK06847         76 DLFDPDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAAR-AAGADVRLGTTVTAIEQDDDGVT-VTFSD-------  146 (375)
T ss_pred             EEECCCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHH-HhCCEEEeCCEEEEEEEcCCEEE-EEEcC-------
Confidence                0000              0  011234566677777775 56999999999999987766543 33321       


Q ss_pred             CCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414          219 DTQSCMDPNVMEAKVVVSSCGHDGPF  244 (356)
Q Consensus       219 ~~~~~g~~~~i~Ak~VI~AtGg~~~~  244 (356)
                             +.++.+|.||+|+|.++..
T Consensus       147 -------g~~~~ad~vI~AdG~~s~~  165 (375)
T PRK06847        147 -------GTTGRYDLVVGADGLYSKV  165 (375)
T ss_pred             -------CCEEEcCEEEECcCCCcch
Confidence                   3578999999999987754

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=99.21  E-value=7.5e-11  Score=118.02  Aligned_cols=138  Identities=19%  Similarity=0.237  Sum_probs=85.4

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEec------cCCCCCccccCCccchhhhccch-HHH----HHHHhCCCcc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQ------SVSPGGGAWLGGQLFSAMVVRKP-AHI----FLDELGIDYD  158 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk------~~~~Gg~~~~~g~~~~~~~~~~~-~~~----~l~~~G~~~~  158 (356)
                      +||++|||+|++|++||+.|++. |++|+|||+      ...+||+|.+.+|++.+.+.... ...    .+..+|+++.
T Consensus         4 ~~DviIIG~G~aG~~aA~~~~~~-g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~~   82 (475)
T PRK06327          4 QFDVVVIGAGPGGYVAAIRAAQL-GLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHVD   82 (475)
T ss_pred             ceeEEEECCCHHHHHHHHHHHhC-CCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccCC
Confidence            59999999999999999999999 999999998      24689999999998876654432 112    2245666543


Q ss_pred             cc-CCeEEEe-chHHHHH---HHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCE
Q 018414          159 EQ-DNYVVIK-HAALFTS---TIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKV  233 (356)
Q Consensus       159 ~~-~~~~~~~-~~~~~~~---~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~  233 (356)
                      .. .+|.... +...+.+   .-++.+.+..+++++.+. +..+..+++. ..+.+..       +     +..++++|+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~~~~~~~-~~v~v~~-------~-----~~~~~~~d~  148 (475)
T PRK06327         83 GVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGR-GSFVGKTDAG-YEIKVTG-------E-----DETVITAKH  148 (475)
T ss_pred             CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEecCCCCC-CEEEEec-------C-----CCeEEEeCE
Confidence            21 1121111 1111221   123334446799999874 4433322211 1122211       0     125799999


Q ss_pred             EEEcCCCCC
Q 018414          234 VVSSCGHDG  242 (356)
Q Consensus       234 VI~AtGg~~  242 (356)
                      ||+|||...
T Consensus       149 lViATGs~p  157 (475)
T PRK06327        149 VIIATGSEP  157 (475)
T ss_pred             EEEeCCCCC
Confidence            999999765

>PRK06475 salicylate hydroxylase; Provisional

Probab=99.21  E-value=3.1e-10  Score=111.06  Aligned_cols=134  Identities=19%  Similarity=0.291  Sum_probs=86.1

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCC---------Ccc---
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI---------DYD---  158 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~---------~~~---  158 (356)
                      -+|+|||||++|+++|+.|+++ |++|+|+||.+.+....  .+     ........+.|+++|+         ...   
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~-G~~V~i~E~~~~~~~~g--~g-----i~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~   74 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAAR-GWAVTIIEKAQELSEVG--AG-----LQLAPNAMRHLERLGVADRLSGTGVTPKALY   74 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCccCcCC--cc-----ceeChhHHHHHHHCCChHHHhhcccCcceEE
Confidence            4799999999999999999999 99999999986542110  00     0111122222222222         000   


Q ss_pred             --c------------------c-CCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecc
Q 018414          159 --E------------------Q-DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMN  217 (356)
Q Consensus       159 --~------------------~-~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~  217 (356)
                        .                  . ...+...+...+.+.|++.+.+..+++++++++++++..+++.+......       
T Consensus        75 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~-------  147 (400)
T PRK06475         75 LMDGRKARPLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIR-------  147 (400)
T ss_pred             EecCCCcceEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEe-------
Confidence              0                  0 00112345677888888888656789999999999998776655432221       


Q ss_pred             cCCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414          218 HDTQSCMDPNVMEAKVVVSSCGHDGPF  244 (356)
Q Consensus       218 ~~~~~~g~~~~i~Ak~VI~AtGg~~~~  244 (356)
                      .+     +..++++|.||.|+|.+|..
T Consensus       148 ~~-----~~~~~~adlvIgADG~~S~v  169 (400)
T PRK06475        148 TN-----SVETVSAAYLIACDGVWSML  169 (400)
T ss_pred             CC-----CCcEEecCEEEECCCccHhH
Confidence            00     13578999999999988744

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=99.21  E-value=3.6e-10  Score=109.49  Aligned_cols=134  Identities=19%  Similarity=0.182  Sum_probs=83.3

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCC--CccccCCccch---------hhh------------------
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPG--GGAWLGGQLFS---------AMV------------------  141 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~G--g~~~~~g~~~~---------~~~------------------  141 (356)
                      |||+|||||++|+++|++|+++ |.+|+|||+....+  ++.+..+.+..         .+.                  
T Consensus         1 ~dvvIIGaGi~G~s~A~~La~~-g~~V~l~e~~~~~~~~~ss~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~~~   79 (380)
T TIGR01377         1 FDVIVVGAGIMGCFAAYHLAKH-GKKTLLLEQFDLPHSRGSSHGQSRIIRKAYPEDFYTPMMLECYQLWAQLEKEAGTKL   79 (380)
T ss_pred             CcEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCCCCCCCCCCCCCeeeeeccCchhHhHHHHHHHHHHHHHHHHhCCee
Confidence            6999999999999999999999 99999999976432  22211111000         000                  


Q ss_pred             -c---------c-c----hHHHHHHHhCCCcccc--------------CC-e-E------EEechHHHHHHHHHHHHcCC
Q 018414          142 -V---------R-K----PAHIFLDELGIDYDEQ--------------DN-Y-V------VIKHAALFTSTIMSKLLARP  184 (356)
Q Consensus       142 -~---------~-~----~~~~~l~~~G~~~~~~--------------~~-~-~------~~~~~~~~~~~l~~~~~~~~  184 (356)
                       .         . .    ...+.+.+.|++....              .. + .      ...+...+...|.+.+. +.
T Consensus        80 ~~~~G~l~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~e~~~~~P~l~~~~~~~~~~~~~~g~i~p~~~~~~l~~~~~-~~  158 (380)
T TIGR01377        80 HRQTGLLLLGPKENQFLKTIQATLSRHGLEHELLSSKQLKQRFPNIRVPRNEVGLLDPNGGVLYAEKALRALQELAE-AH  158 (380)
T ss_pred             EeecCeEEEcCCCcHHHHHHHHHHHHcCCCeEEcCHHHHHHhCCCCcCCCCceEEEcCCCcEEcHHHHHHHHHHHHH-Hc
Confidence             0         0 0    0112233344432100              00 0 0      02244566777777665 57


Q ss_pred             CcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          185 NVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       185 gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      |++++.+++|+++..+++.+. +.+.               ..++.++.||+|+|++.
T Consensus       159 g~~~~~~~~V~~i~~~~~~~~-v~~~---------------~~~i~a~~vV~aaG~~~  200 (380)
T TIGR01377       159 GATVRDGTKVVEIEPTELLVT-VKTT---------------KGSYQANKLVVTAGAWT  200 (380)
T ss_pred             CCEEECCCeEEEEEecCCeEE-EEeC---------------CCEEEeCEEEEecCcch
Confidence            999999999999987766553 4442               24689999999999765

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=99.21  E-value=1.9e-10  Score=113.98  Aligned_cols=123  Identities=20%  Similarity=0.285  Sum_probs=78.0

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCC-CCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEec
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS-PGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKH  168 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~-~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~  168 (356)
                      +|||+|||||++|++||+.|++. |++|+|+||... .||.|++.||++.+.+.....      .++.|...     ..+
T Consensus         3 ~~dvvVIG~GpaG~~aA~~l~~~-g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~------~~~~~~~~-----~~~   70 (438)
T PRK07251          3 TYDLIVIGFGKAGKTLAAKLASA-GKKVALVEESKAMYGGTCINIGCIPTKTLLVAAE------KNLSFEQV-----MAT   70 (438)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhC-CCEEEEEecCCcccceeeecCccccchHhhhhhh------cCCCHHHH-----HHH
Confidence            59999999999999999999999 999999999864 699998888888766543211      12222110     000


Q ss_pred             hH----HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          169 AA----LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       169 ~~----~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      ..    .+.....+.+ .+.|++++.++. ..  .++..+ .+...             ++..++++|+||+|||...
T Consensus        71 ~~~~~~~~~~~~~~~~-~~~gV~~~~g~~-~~--~~~~~v-~v~~~-------------~~~~~~~~d~vViATGs~~  130 (438)
T PRK07251         71 KNTVTSRLRGKNYAML-AGSGVDLYDAEA-HF--VSNKVI-EVQAG-------------DEKIELTAETIVINTGAVS  130 (438)
T ss_pred             HHHHHHHHHHHHHHHH-HhCCCEEEEEEE-EE--ccCCEE-EEeeC-------------CCcEEEEcCEEEEeCCCCC
Confidence            11    1112222233 357899988753 21  233332 22211             0135799999999999765

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.21  E-value=4.8e-10  Score=109.20  Aligned_cols=135  Identities=19%  Similarity=0.256  Sum_probs=81.7

Q ss_pred             cccEEEECCCHHHHHHHHHhhcC--CCCeEEEEeccCCCCC--ccccCCccchhhhccchHHHHHHHhCC---------C
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKN--PNIQIAIIEQSVSPGG--GAWLGGQLFSAMVVRKPAHIFLDELGI---------D  156 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~--~G~~V~llEk~~~~Gg--~~~~~g~~~~~~~~~~~~~~~l~~~G~---------~  156 (356)
                      .+||+|||||++|+++|+.|+++  .|++|+|+||......  ..+.+..    ........+.|+++|+         +
T Consensus         3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~----~~l~~~~~~~l~~lgl~~~~~~~~~~   78 (395)
T PRK05732          3 RMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARA----IALAAGTCQQLARLGVWQALADCATP   78 (395)
T ss_pred             cCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccc----eeccHHHHHHHHHCCChhhhHhhcCC
Confidence            58999999999999999999874  2899999999532110  0000000    0000011112222221         1


Q ss_pred             ccc-----c---------------CCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeec
Q 018414          157 YDE-----Q---------------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSM  216 (356)
Q Consensus       157 ~~~-----~---------------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~  216 (356)
                      ...     .               ..+....+...+.+.|++.+.+..|++++++++++++..+++.+. +.+.+     
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~-v~~~~-----  152 (395)
T PRK05732         79 ITHIHVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGSVR-VTLDD-----  152 (395)
T ss_pred             ccEEEEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEE-EEECC-----
Confidence            000     0               001112234566677777776567899999999999987666554 44321     


Q ss_pred             ccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          217 NHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       217 ~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                               ..++++|.||.|+|..+.
T Consensus       153 ---------g~~~~a~~vI~AdG~~S~  170 (395)
T PRK05732        153 ---------GETLTGRLLVAADGSHSA  170 (395)
T ss_pred             ---------CCEEEeCEEEEecCCChh
Confidence                     356899999999997764

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=2.9e-10  Score=106.72  Aligned_cols=112  Identities=22%  Similarity=0.329  Sum_probs=73.9

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCe-EEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEec
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQ-IAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKH  168 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~-V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~  168 (356)
                      .|||+||||||+||+||+++++. +++ ++|+|+. .+||..      -..              . ....-..++--..
T Consensus         3 ~~DviIIG~GPAGl~AAiya~r~-~l~~~li~~~~-~~gg~~------~~~--------------~-~venypg~~~~~~   59 (305)
T COG0492           3 IYDVIIIGGGPAGLTAAIYAARA-GLKVVLILEGG-EPGGQL------TKT--------------T-DVENYPGFPGGIL   59 (305)
T ss_pred             eeeEEEECCCHHHHHHHHHHHHc-CCCcEEEEecC-CcCCcc------ccc--------------e-eecCCCCCccCCc
Confidence            59999999999999999999999 999 6666665 444211      000              0 0000011222224


Q ss_pred             hHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          169 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       169 ~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      ..++.+.+.+.+. +.++++.. ..|..+...++ ...+.+.+               .+++||.||+|||...
T Consensus        60 g~~L~~~~~~~a~-~~~~~~~~-~~v~~v~~~~~-~F~v~t~~---------------~~~~ak~vIiAtG~~~  115 (305)
T COG0492          60 GPELMEQMKEQAE-KFGVEIVE-DEVEKVELEGG-PFKVKTDK---------------GTYEAKAVIIATGAGA  115 (305)
T ss_pred             hHHHHHHHHHHHh-hcCeEEEE-EEEEEEeecCc-eEEEEECC---------------CeEEEeEEEECcCCcc
Confidence            5667777777765 78999888 57777765554 55555532               3499999999999655

>PRK11445 putative oxidoreductase; Provisional

Probab=99.20  E-value=4.3e-10  Score=108.21  Aligned_cols=132  Identities=17%  Similarity=0.203  Sum_probs=83.8

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCC--C-ccccCCccchhhhccchHHHHHHHhCCCccc--------
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPG--G-GAWLGGQLFSAMVVRKPAHIFLDELGIDYDE--------  159 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~G--g-~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~--------  159 (356)
                      |||+|||||++|+++|+.|++.  ++|+|+|+.+..+  + ....++.      ......+.|+++|+....        
T Consensus         2 ~dV~IvGaGpaGl~~A~~La~~--~~V~liE~~~~~~~~~~~~~~g~~------l~~~~~~~L~~lgl~~~~~~~~~~~~   73 (351)
T PRK11445          2 YDVAIIGLGPAGSALARLLAGK--MKVIAIDKKHQCGTEGFSKPCGGL------LAPDAQKSFAKDGLTLPKDVIANPQI   73 (351)
T ss_pred             ceEEEECCCHHHHHHHHHHhcc--CCEEEEECCCccccccccCcCcCc------cCHHHHHHHHHcCCCCCcceeecccc
Confidence            7999999999999999999986  8999999987542  1 1111111      122334455555542110        


Q ss_pred             --------c-------CCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCC
Q 018414          160 --------Q-------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCM  224 (356)
Q Consensus       160 --------~-------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g  224 (356)
                              .       ...+...+...+.+.|.+. . ..|+++++++.++++..+++.+. +....           ++
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~-~-~~gv~v~~~~~v~~i~~~~~~~~-v~~~~-----------~g  139 (351)
T PRK11445         74 FAVKTIDLANSLTRNYQRSYINIDRHKFDLWLKSL-I-PASVEVYHNSLCRKIWREDDGYH-VIFRA-----------DG  139 (351)
T ss_pred             ceeeEecccccchhhcCCCcccccHHHHHHHHHHH-H-hcCCEEEcCCEEEEEEEcCCEEE-EEEec-----------CC
Confidence                    0       0011123445666666553 3 56899999999999987766543 33210           11


Q ss_pred             CCeEEEcCEEEEcCCCCCCC
Q 018414          225 DPNVMEAKVVVSSCGHDGPF  244 (356)
Q Consensus       225 ~~~~i~Ak~VI~AtGg~~~~  244 (356)
                      +..+++|+.||+|+|..+..
T Consensus       140 ~~~~i~a~~vV~AdG~~S~v  159 (351)
T PRK11445        140 WEQHITARYLVGADGANSMV  159 (351)
T ss_pred             cEEEEEeCEEEECCCCCcHH
Confidence            23479999999999987754

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=99.20  E-value=1.4e-10  Score=114.90  Aligned_cols=142  Identities=20%  Similarity=0.297  Sum_probs=89.3

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccc------cCCccch---------hhh------------
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW------LGGQLFS---------AMV------------  141 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~------~~g~~~~---------~~~------------  141 (356)
                      .++||+|||||+.|+.+|+.++.+ |++|+|+|+++...|++-      .+|-.|-         ..+            
T Consensus        11 ~~~DviVIGGGitG~GiArDaA~R-Gl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~~~APH   89 (532)
T COG0578          11 EEFDVIVIGGGITGAGIARDAAGR-GLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFSLVREALAEREVLLRIAPH   89 (532)
T ss_pred             cCCCEEEECCchhhHHHHHHHHhC-CCeEEEEecCcccCcccCccccCccchhhhhhhcchHHHHHHHHHHHHHHHhCcc
Confidence            579999999999999999999999 999999999987665541      1111000         000            


Q ss_pred             ----------ccc-hHHHHH--------HH-hCCC--------------------cccc---CCeEE---EechHHHHHH
Q 018414          142 ----------VRK-PAHIFL--------DE-LGID--------------------YDEQ---DNYVV---IKHAALFTST  175 (356)
Q Consensus       142 ----------~~~-~~~~~l--------~~-~G~~--------------------~~~~---~~~~~---~~~~~~~~~~  175 (356)
                                ... ..-.|+        +. -|+.                    +.+.   +.+.+   ..+...+.-.
T Consensus        90 ~v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vddaRLv~~  169 (532)
T COG0578          90 LVEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVDDARLVAA  169 (532)
T ss_pred             ccccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceechHHHHHH
Confidence                      000 000000        00 0110                    0000   01111   1122344444


Q ss_pred             HHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          176 IMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       176 l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      +...+. +.|.+++..++|+.+..+++ ++||.+.+      ..   +|+..+++|+.||.|+|.++
T Consensus       170 ~a~~A~-~~Ga~il~~~~v~~~~re~~-v~gV~~~D------~~---tg~~~~ira~~VVNAaGpW~  225 (532)
T COG0578         170 NARDAA-EHGAEILTYTRVESLRREGG-VWGVEVED------RE---TGETYEIRARAVVNAAGPWV  225 (532)
T ss_pred             HHHHHH-hcccchhhcceeeeeeecCC-EEEEEEEe------cC---CCcEEEEEcCEEEECCCccH
Confidence            444554 67999999999999999988 99999864      22   23568899999999999765

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=99.19  E-value=5e-10  Score=109.74  Aligned_cols=58  Identities=22%  Similarity=0.229  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEe-CCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      ..+...|.+.+. +.|++++.+++|+++... ++++.++.+.               ..++.++.||+|+|++.+
T Consensus       183 ~~l~~~l~~~a~-~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~---------------~g~i~a~~vVvaagg~~~  241 (407)
T TIGR01373       183 DAVAWGYARGAD-RRGVDIIQNCEVTGFIRRDGGRVIGVETT---------------RGFIGAKKVGVAVAGHSS  241 (407)
T ss_pred             HHHHHHHHHHHH-HCCCEEEeCCEEEEEEEcCCCcEEEEEeC---------------CceEECCEEEECCChhhH
Confidence            345556666665 679999999999999764 5667777664               246999999999998763

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.19  E-value=5.6e-10  Score=112.46  Aligned_cols=41  Identities=20%  Similarity=0.365  Sum_probs=36.6

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~  130 (356)
                      .+|||+|||||+.|+++|+.|+++ |++|+||||+...+|++
T Consensus         5 ~~~DVvIIGGGi~G~~~A~~la~r-G~~V~LlEk~d~~~GtS   45 (502)
T PRK13369          5 ETYDLFVIGGGINGAGIARDAAGR-GLKVLLCEKDDLAQGTS   45 (502)
T ss_pred             cccCEEEECCCHHHHHHHHHHHhC-CCcEEEEECCCCCCCCc
Confidence            459999999999999999999999 99999999997655544

>PRK07538 hypothetical protein; Provisional

Probab=99.19  E-value=5.2e-10  Score=109.94  Aligned_cols=141  Identities=15%  Similarity=0.150  Sum_probs=83.9

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchh---hhccchHHHHHHHhCCCcc------cc--
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSA---MVVRKPAHIFLDELGIDYD------EQ--  160 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~---~~~~~~~~~~l~~~G~~~~------~~--  160 (356)
                      ||+|||||++|+++|+.|+++ |++|+|+||...+..... +-.+...   .+..-...+.+...+++..      ..  
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~-G~~v~v~E~~~~~~~~g~-gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~   79 (413)
T PRK07538          2 KVLIAGGGIGGLTLALTLHQR-GIEVVVFEAAPELRPLGV-GINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQ   79 (413)
T ss_pred             eEEEECCCHHHHHHHHHHHhC-CCcEEEEEcCCcccccCc-ceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCC
Confidence            899999999999999999999 999999999875431100 0000000   0000001111222221100      00  


Q ss_pred             ------------CCeE-EEechHHHHHHHHHHHHcCCC-cEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCC
Q 018414          161 ------------DNYV-VIKHAALFTSTIMSKLLARPN-VKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDP  226 (356)
Q Consensus       161 ------------~~~~-~~~~~~~~~~~l~~~~~~~~g-v~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~  226 (356)
                                  ..++ +..+...+.+.|++.+.+..| .+++++++++++..+++.+. +.+.+      .   ..++.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~-~~~~~------~---~~g~~  149 (413)
T PRK07538         80 RIWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTV-VFLGD------R---AGGDL  149 (413)
T ss_pred             EEeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceE-EEEec------c---CCCcc
Confidence                        0111 224567788888888765445 57999999999987665432 22211      0   11234


Q ss_pred             eEEEcCEEEEcCCCCCCC
Q 018414          227 NVMEAKVVVSSCGHDGPF  244 (356)
Q Consensus       227 ~~i~Ak~VI~AtGg~~~~  244 (356)
                      .+++||.||.|+|..+..
T Consensus       150 ~~~~adlvIgADG~~S~v  167 (413)
T PRK07538        150 VSVRGDVLIGADGIHSAV  167 (413)
T ss_pred             ceEEeeEEEECCCCCHHH
Confidence            689999999999987743

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=99.18  E-value=6.8e-10  Score=107.43  Aligned_cols=135  Identities=18%  Similarity=0.254  Sum_probs=83.4

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCC--CccccCCcc----------c-----------hh-------
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPG--GGAWLGGQL----------F-----------SA-------  139 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~G--g~~~~~g~~----------~-----------~~-------  139 (356)
                      +|||+|||||++|+++|++|+++ |++|+||||+...+  +.++....+          +           ..       
T Consensus         3 ~~dv~IIGgGi~G~s~A~~L~~~-g~~V~lie~~~~~~~~~ss~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~   81 (376)
T PRK11259          3 RYDVIVIGLGSMGSAAGYYLARR-GLRVLGLDRFMPPHQQGSSHGDTRIIRHAYGEGPAYVPLVLRAQELWRELERESGE   81 (376)
T ss_pred             cccEEEECCCHHHHHHHHHHHHC-CCeEEEEecccCCCCCcCcCCcceEEEeeccCCchhhHHHHHHHHHHHHHHHHhCC
Confidence            48999999999999999999999 99999999986432  111110000          0           00       


Q ss_pred             -hh-------cc-c------hHHHHHHHhCCCcccc--------------CC--eEE------EechHHHHHHHHHHHHc
Q 018414          140 -MV-------VR-K------PAHIFLDELGIDYDEQ--------------DN--YVV------IKHAALFTSTIMSKLLA  182 (356)
Q Consensus       140 -~~-------~~-~------~~~~~l~~~G~~~~~~--------------~~--~~~------~~~~~~~~~~l~~~~~~  182 (356)
                       .+       .. .      ...+.+.++|++....              ..  ...      ......+...+.+.+. 
T Consensus        82 ~~~~~~G~l~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~P~l~~~~~~~a~~~~~~g~v~p~~~~~~~~~~~~-  160 (376)
T PRK11259         82 PLFVRTGVLNLGPADSDFLANSIRSARQHGLPHEVLDAAEIRRRFPQFRLPDGYIALFEPDGGFLRPELAIKAHLRLAR-  160 (376)
T ss_pred             ccEEEECCEEEcCCCCHHHHHHHHHHHHcCCCcEEECHHHHHHhCCCCcCCCCceEEEcCCCCEEcHHHHHHHHHHHHH-
Confidence             00       00 0      0112233455432110              00  000      1234556666666665 


Q ss_pred             CCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          183 RPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       183 ~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      +.|++++++++|+++..+++.+ .+.+.               ..++++|.||+|+|++.
T Consensus       161 ~~gv~i~~~~~v~~i~~~~~~~-~v~~~---------------~g~~~a~~vV~A~G~~~  204 (376)
T PRK11259        161 EAGAELLFNEPVTAIEADGDGV-TVTTA---------------DGTYEAKKLVVSAGAWV  204 (376)
T ss_pred             HCCCEEECCCEEEEEEeeCCeE-EEEeC---------------CCEEEeeEEEEecCcch
Confidence            5799999999999998877644 34443               13689999999999775

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=99.18  E-value=1.3e-10  Score=116.32  Aligned_cols=136  Identities=18%  Similarity=0.245  Sum_probs=86.7

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC--------CCCCccccCCccchhhhccchHH-H---HHHHhCCCc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV--------SPGGGAWLGGQLFSAMVVRKPAH-I---FLDELGIDY  157 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~--------~~Gg~~~~~g~~~~~~~~~~~~~-~---~l~~~G~~~  157 (356)
                      +|||+|||+|++|+.+|+.|++. |++|+|||+..        ..||.|.+.||++.+.+...... +   ....+|+.+
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~-G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~   80 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADY-GAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNV   80 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCccc
Confidence            48999999999999999999999 99999999741        47999999999999987765332 2   234466654


Q ss_pred             cc--cCCeEE-EechHHHHHHH---HHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEc
Q 018414          158 DE--QDNYVV-IKHAALFTSTI---MSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEA  231 (356)
Q Consensus       158 ~~--~~~~~~-~~~~~~~~~~l---~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A  231 (356)
                      ..  .-+|.. ..+.......+   ++...+..|++++.+.. .  ..+.+.+. |...            +++..++++
T Consensus        81 ~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a-~--f~~~~~v~-v~~~------------~g~~~~~~~  144 (484)
T TIGR01438        81 EETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYA-E--FVDKHRIK-ATNK------------KGKEKIYSA  144 (484)
T ss_pred             CCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEE-E--EcCCCEEE-Eecc------------CCCceEEEe
Confidence            32  112211 11112222221   22334467999988742 1  12333321 2111            112357999


Q ss_pred             CEEEEcCCCCC
Q 018414          232 KVVVSSCGHDG  242 (356)
Q Consensus       232 k~VI~AtGg~~  242 (356)
                      |+||+|||+..
T Consensus       145 d~lVIATGs~p  155 (484)
T TIGR01438       145 ERFLIATGERP  155 (484)
T ss_pred             CEEEEecCCCC
Confidence            99999999765

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PLN02463 lycopene beta cyclase

Probab=99.18  E-value=5.9e-10  Score=110.28  Aligned_cols=132  Identities=19%  Similarity=0.269  Sum_probs=82.0

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCC-ccchhhhccchHHHHHHH-hC---CCccc-----
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGG-QLFSAMVVRKPAHIFLDE-LG---IDYDE-----  159 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g-~~~~~~~~~~~~~~~l~~-~G---~~~~~-----  159 (356)
                      .|||+|||||++|+++|+.|++. |++|+|||+.+...   |... +.+...+......+.+.. +.   +.++.     
T Consensus        28 ~~DVvIVGaGpAGLalA~~La~~-Gl~V~liE~~~~~~---~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~  103 (447)
T PLN02463         28 VVDLVVVGGGPAGLAVAQQVSEA-GLSVCCIDPSPLSI---WPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKD  103 (447)
T ss_pred             CceEEEECCCHHHHHHHHHHHHC-CCeEEEeccCccch---hccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCcc
Confidence            58999999999999999999999 99999999975321   2110 110000000000011111 10   00000     


Q ss_pred             -cCCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcC
Q 018414          160 -QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSC  238 (356)
Q Consensus       160 -~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~At  238 (356)
                       ...|. ..+...+.+.|.+++. +.|++++. .+|+++..+++.+ .|.+.+              +.+++|+.||+|+
T Consensus       104 ~~~~y~-~V~R~~L~~~Ll~~~~-~~GV~~~~-~~V~~I~~~~~~~-~V~~~d--------------G~~i~A~lVI~Ad  165 (447)
T PLN02463        104 LDRPYG-RVNRKKLKSKMLERCI-ANGVQFHQ-AKVKKVVHEESKS-LVVCDD--------------GVKIQASLVLDAT  165 (447)
T ss_pred             ccCcce-eEEHHHHHHHHHHHHh-hcCCEEEe-eEEEEEEEcCCeE-EEEECC--------------CCEEEcCEEEECc
Confidence             01222 2356778888888886 56999874 5899988776653 454432              3579999999999


Q ss_pred             CCCCC
Q 018414          239 GHDGP  243 (356)
Q Consensus       239 Gg~~~  243 (356)
                      |..+.
T Consensus       166 G~~s~  170 (447)
T PLN02463        166 GFSRC  170 (447)
T ss_pred             CCCcC
Confidence            98765

>PRK14727 putative mercuric reductase; Provisional

Probab=99.18  E-value=2.8e-10  Score=114.02  Aligned_cols=55  Identities=25%  Similarity=0.405  Sum_probs=50.4

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccch
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKP  145 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~  145 (356)
                      +|||+|||+|++|+.+|+.|++. |.+|+|+|+...+||.|.+.||++.+.+....
T Consensus        16 ~~dvvvIG~G~aG~~~a~~~~~~-g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a   70 (479)
T PRK14727         16 QLHVAIIGSGSAAFAAAIKAAEH-GARVTIIEGADVIGGCCVNVGCVPSKILIRAA   70 (479)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhC-CCeEEEEEccCcceeEeccccccccHHHHHHH
Confidence            59999999999999999999999 99999999987899999999999988776543

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=99.17  E-value=9.2e-10  Score=111.02  Aligned_cols=40  Identities=20%  Similarity=0.339  Sum_probs=35.7

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG  129 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~  129 (356)
                      ..|||+|||||+.|+++|+.|+++ |++|+||||++..+|+
T Consensus         5 ~~~DVvIIGGGi~G~~~A~~la~r-Gl~V~LvEk~d~~~Gt   44 (508)
T PRK12266          5 ETYDLLVIGGGINGAGIARDAAGR-GLSVLLCEQDDLASAT   44 (508)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHC-CCeEEEEecCCCCCCc
Confidence            359999999999999999999999 9999999998765443

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=99.17  E-value=1.7e-10  Score=114.92  Aligned_cols=129  Identities=24%  Similarity=0.317  Sum_probs=80.8

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccch----HHHHHHHhCCCcccc-CCeE
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKP----AHIFLDELGIDYDEQ-DNYV  164 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~----~~~~l~~~G~~~~~~-~~~~  164 (356)
                      +|||+|||||++|+.+|..|++. |++|+|||+ ...||.|.+.||++.+.+....    ..+.+..+|++.... .++.
T Consensus         3 ~yDvvIIG~G~aGl~aA~~l~~~-g~~v~lie~-~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~~~~~   80 (460)
T PRK06292          3 KYDVIVIGAGPAGYVAARRAAKL-GKKVALIEK-GPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGPKIDFK   80 (460)
T ss_pred             cccEEEECCCHHHHHHHHHHHHC-CCeEEEEeC-CccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCccCHH
Confidence            59999999999999999999999 999999999 5789999889999988766542    223344566543311 1111


Q ss_pred             E-EechHHHHH----HHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCC
Q 018414          165 V-IKHAALFTS----TIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG  239 (356)
Q Consensus       165 ~-~~~~~~~~~----~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtG  239 (356)
                      . ..+......    .+.+...+..+++++.+. +..+  +.+.+   .+.               ..++++|+||+|||
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~--~~~~v---~v~---------------~~~~~~d~lIiATG  139 (460)
T PRK06292         81 KVMARVRRERDRFVGGVVEGLEKKPKIDKIKGT-ARFV--DPNTV---EVN---------------GERIEAKNIVIATG  139 (460)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEE-EEEc--cCCEE---EEC---------------cEEEEeCEEEEeCC
Confidence            0 001111111    111222335678777652 2211  22222   111               35799999999999


Q ss_pred             CC
Q 018414          240 HD  241 (356)
Q Consensus       240 g~  241 (356)
                      ..
T Consensus       140 s~  141 (460)
T PRK06292        140 SR  141 (460)
T ss_pred             CC
Confidence            77

>PRK06996 hypothetical protein; Provisional

Probab=99.17  E-value=7.1e-10  Score=108.50  Aligned_cols=134  Identities=17%  Similarity=0.252  Sum_probs=86.3

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCC----CeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCC------cc
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPN----IQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID------YD  158 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G----~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~------~~  158 (356)
                      .++||+|||||++|+++|+.|++. |    ++|+|+|+.......     .............+.|+++|+.      +.
T Consensus        10 ~~~dv~IvGgGpaG~~~A~~L~~~-g~~~g~~v~l~e~~~~~~~~-----~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~   83 (398)
T PRK06996         10 PDFDIAIVGAGPVGLALAGWLARR-SATRALSIALIDAREPAASA-----NDPRAIALSHGSRVLLETLGAWPADATPIE   83 (398)
T ss_pred             CCCCEEEECcCHHHHHHHHHHhcC-CCcCCceEEEecCCCCCcCC-----CCceEEEecHHHHHHHHhCCCchhcCCccc
Confidence            358999999999999999999998 6    579999997532210     0011112233444555555531      00


Q ss_pred             c------c--------------CCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeeccc
Q 018414          159 E------Q--------------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH  218 (356)
Q Consensus       159 ~------~--------------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~  218 (356)
                      .      .              ..+.+..+...+.+.|++++. +.+++++++++++++..+++.+. +...+       
T Consensus        84 ~~~~~~~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~-~~g~~~~~~~~v~~~~~~~~~v~-v~~~~-------  154 (398)
T PRK06996         84 HIHVSQRGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVR-GTPVRWLTSTTAHAPAQDADGVT-LALGT-------  154 (398)
T ss_pred             EEEEecCCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHH-hCCCEEEcCCeeeeeeecCCeEE-EEECC-------
Confidence            0      0              001123445678888888886 56899999999999977666543 22221       


Q ss_pred             CCCCCCCCeEEEcCEEEEcCCCC
Q 018414          219 DTQSCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       219 ~~~~~g~~~~i~Ak~VI~AtGg~  241 (356)
                      .+    ...+++||+||.|+|+.
T Consensus       155 ~~----g~~~i~a~lvIgADG~~  173 (398)
T PRK06996        155 PQ----GARTLRARIAVQAEGGL  173 (398)
T ss_pred             CC----cceEEeeeEEEECCCCC
Confidence            00    12579999999999964

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=99.17  E-value=1.2e-10  Score=115.97  Aligned_cols=133  Identities=20%  Similarity=0.278  Sum_probs=83.0

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccch-HHHH---HHHhCCCcccc-CCeEE
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKP-AHIF---LDELGIDYDEQ-DNYVV  165 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~-~~~~---l~~~G~~~~~~-~~~~~  165 (356)
                      |||+|||||++|+.+|+.|++. |++|+|||+ ..+||.|.+.||++.+.+.... ..+.   +..+|+..... .+|..
T Consensus         2 yDvvVIG~G~aGl~aA~~la~~-G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   79 (461)
T TIGR01350         2 YDVVVIGGGPGGYVAAIRAAQL-GLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVDWEK   79 (461)
T ss_pred             ccEEEECCCHHHHHHHHHHHhC-CCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCCHHH
Confidence            8999999999999999999999 999999999 6789999999998887665432 2222   44456543211 11111


Q ss_pred             E-echHHHHH---HHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414          166 I-KHAALFTS---TIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       166 ~-~~~~~~~~---~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~  241 (356)
                      . .+...+..   .-++.+.++.|++++.+.. ..+  +...+ .+...+             ...++++|+||+|||..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~-~~~--~~~~~-~v~~~~-------------g~~~~~~d~lVlAtG~~  142 (461)
T TIGR01350        80 MQKRKNKVVKKLVGGVKGLLKKNKVTVIKGEA-KFL--DPGTV-LVTGEN-------------GEETLTAKNIIIATGSR  142 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEE-EEc--cCCEE-EEecCC-------------CcEEEEeCEEEEcCCCC
Confidence            0 01111111   1122334467899988743 222  23332 122110             12579999999999975


Q ss_pred             C
Q 018414          242 G  242 (356)
Q Consensus       242 ~  242 (356)
                      .
T Consensus       143 p  143 (461)
T TIGR01350       143 P  143 (461)
T ss_pred             C
Confidence            4

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=99.17  E-value=5.8e-10  Score=109.47  Aligned_cols=58  Identities=29%  Similarity=0.413  Sum_probs=45.7

Q ss_pred             hHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          169 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       169 ~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      ...+...|.+.+. +.|++|+++++|+++..+++++.++.+.               ..+++||.||+|+|.++
T Consensus       200 p~~~~~~l~~~~~-~~G~~i~~~~~V~~i~~~~~~~~~v~t~---------------~~~~~a~~VV~a~G~~~  257 (416)
T PRK00711        200 CQLFTQRLAAMAE-QLGVKFRFNTPVDGLLVEGGRITGVQTG---------------GGVITADAYVVALGSYS  257 (416)
T ss_pred             HHHHHHHHHHHHH-HCCCEEEcCCEEEEEEecCCEEEEEEeC---------------CcEEeCCEEEECCCcch
Confidence            3456677777665 6799999999999998888877767653               24689999999999765

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=99.17  E-value=9.7e-10  Score=107.85  Aligned_cols=35  Identities=26%  Similarity=0.601  Sum_probs=32.8

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSP  126 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~  126 (356)
                      +||+|||||.+|+++|++|++. |.+|+||||+..+
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~-g~~V~vle~~~~~   36 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQR-GYQVTVFDRHRYA   36 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCCC
Confidence            5999999999999999999999 9999999998744

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=99.16  E-value=4.2e-10  Score=111.56  Aligned_cols=124  Identities=21%  Similarity=0.262  Sum_probs=77.8

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC-CCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEec
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV-SPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKH  168 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~-~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~  168 (356)
                      +|||+|||||++|+.+|+.|+++ |++|+|+|+.+ ..||.|++.||++.+.+.....      ....|...     ..+
T Consensus         3 ~yDvvVIGgGpaGl~aA~~la~~-g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~------~~~~~~~~-----~~~   70 (441)
T PRK08010          3 KYQAVIIGFGKAGKTLAVTLAKA-GWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQ------QHTDFVRA-----IQR   70 (441)
T ss_pred             cCCEEEECCCHhHHHHHHHHHHC-CCeEEEEcCCCCccceeEeeccccchHHHHHHhc------cCCCHHHH-----HHH
Confidence            59999999999999999999999 99999999976 4788888888887765432210      01111000     001


Q ss_pred             hHHHHH----HHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          169 AALFTS----TIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       169 ~~~~~~----~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      ......    ..++.+.+..|++++.+ ++..+  +.+.+ .|...+             ...++.+|+||+|||+..
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~i--~~~~~-~v~~~~-------------g~~~~~~d~lviATGs~p  131 (441)
T PRK08010         71 KNEVVNFLRNKNFHNLADMPNIDVIDG-QAEFI--NNHSL-RVHRPE-------------GNLEIHGEKIFINTGAQT  131 (441)
T ss_pred             HHHHHHHHHHhHHHHHhhcCCcEEEEE-EEEEe--cCCEE-EEEeCC-------------CeEEEEeCEEEEcCCCcC
Confidence            111111    12334444558998877 34433  23332 232221             124699999999999765

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=99.16  E-value=2.6e-11  Score=107.09  Aligned_cols=129  Identities=22%  Similarity=0.315  Sum_probs=70.2

Q ss_pred             EEECCCHHHHHHHHHhhcCCCCe-EEEEeccCCCCCccccCC----ccch-hhhccchHHHHHHHhCCC----ccccCCe
Q 018414           94 VVVGAGSAGLSCAYELSKNPNIQ-IAIIEQSVSPGGGAWLGG----QLFS-AMVVRKPAHIFLDELGID----YDEQDNY  163 (356)
Q Consensus        94 vIIGgG~aGl~aA~~La~~~G~~-V~llEk~~~~Gg~~~~~g----~~~~-~~~~~~~~~~~l~~~G~~----~~~~~~~  163 (356)
                      +|||||++||++|+.|.++ |.+ |+|||++..+||. |..-    .+.. ...........+..+...    +.....+
T Consensus         1 ~IIGaG~aGl~~a~~l~~~-g~~~v~v~e~~~~~Gg~-w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLER-GIDPVVVLERNDRPGGV-WRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDF   78 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHT-T---EEEEESSSSSTTH-HHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSS
T ss_pred             CEECcCHHHHHHHHHHHhC-CCCcEEEEeCCCCCCCe-eEEeCCCCccccCccccccccCCcccccccccCCCCCCCccc
Confidence            7999999999999999999 999 9999999888875 3310    0100 000000000000000000    0000111


Q ss_pred             EEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          164 VVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       164 ~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                         ....++.+.| +.+.++.+++++++++|+++..++++ +.+.+.+              ..+++|+.||+|||..+.
T Consensus        79 ---~~~~~v~~yl-~~~~~~~~l~i~~~~~V~~v~~~~~~-w~v~~~~--------------~~~~~a~~VVlAtG~~~~  139 (203)
T PF13738_consen   79 ---PSGEEVLDYL-QEYAERFGLEIRFNTRVESVRRDGDG-WTVTTRD--------------GRTIRADRVVLATGHYSH  139 (203)
T ss_dssp             ---EBHHHHHHHH-HHHHHHTTGGEETS--EEEEEEETTT-EEEEETT--------------S-EEEEEEEEE---SSCS
T ss_pred             ---CCHHHHHHHH-HHHHhhcCcccccCCEEEEEEEeccE-EEEEEEe--------------cceeeeeeEEEeeeccCC
Confidence               2345555554 44445678899999999999999877 4455542              358999999999996553

...

>PTZ00367 squalene epoxidase; Provisional

Probab=99.16  E-value=9.7e-10  Score=111.66  Aligned_cols=151  Identities=25%  Similarity=0.280  Sum_probs=88.3

Q ss_pred             ccCCcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCc--------
Q 018414           86 ITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDY--------  157 (356)
Q Consensus        86 ~~~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~--------  157 (356)
                      ....+|||+|||||++|+++|+.|+++ |++|+|+||......... .|     ........+.|+++|+.-        
T Consensus        29 ~~~~~~dViIVGaGiaGlalA~aLar~-G~~V~VlEr~~~~~~~r~-~G-----~~L~p~g~~~L~~LGL~d~l~~i~~~  101 (567)
T PTZ00367         29 RTNYDYDVIIVGGSIAGPVLAKALSKQ-GRKVLMLERDLFSKPDRI-VG-----ELLQPGGVNALKELGMEECAEGIGMP  101 (567)
T ss_pred             ccccCccEEEECCCHHHHHHHHHHHhc-CCEEEEEccccccccchh-hh-----hhcCHHHHHHHHHCCChhhHhhcCcc
Confidence            334579999999999999999999999 999999999751110000 00     112233445555555420        


Q ss_pred             -------cccCCe----------EEEechHHHHHHHHHHH--HcCCCcEEEcCeEEEEEEEeCC----eEEEEEEccee-
Q 018414          158 -------DEQDNY----------VVIKHAALFTSTIMSKL--LARPNVKLFNAVAAEDLIVKGG----RVGGVVTNWAL-  213 (356)
Q Consensus       158 -------~~~~~~----------~~~~~~~~~~~~l~~~~--~~~~gv~i~~~~~v~~i~~~~~----~v~gv~~~~~~-  213 (356)
                             +..+..          ....+...+.+.|.+.+  ....|++++.. +++++..+++    ++.+|...... 
T Consensus       102 ~~~~~v~~~~G~~~~i~~~~~~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~~~-~v~~l~~~~~~~~~~v~gV~~~~~~~  180 (567)
T PTZ00367        102 CFGYVVFDHKGKQVKLPYGAGASGVSFHFGDFVQNLRSHVFHNCQDNVTMLEG-TVNSLLEEGPGFSERAYGVEYTEAEK  180 (567)
T ss_pred             eeeeEEEECCCCEEEecCCCCCceeEeEHHHHHHHHHHHHHhhcCCCcEEEEe-EEEEeccccCccCCeeEEEEEecCCc
Confidence                   000100          01124456777777766  33578999765 7888876543    36777653210 


Q ss_pred             e-----ecccC-----CCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414          214 V-----SMNHD-----TQSCMDPNVMEAKVVVSSCGHDGPF  244 (356)
Q Consensus       214 ~-----~~~~~-----~~~~g~~~~i~Ak~VI~AtGg~~~~  244 (356)
                      .     .+..+     +-...+..+++||.||.|+|.+|.+
T Consensus       181 ~~~~~~~f~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~v  221 (567)
T PTZ00367        181 YDVPENPFREDPPSANPSATTVRKVATAPLVVMCDGGMSKF  221 (567)
T ss_pred             ccccccccccccccccccccccceEEEeCEEEECCCcchHH
Confidence            0     00000     0000124679999999999977643

>PRK05868 hypothetical protein; Validated

Probab=99.15  E-value=9.6e-10  Score=106.63  Aligned_cols=130  Identities=21%  Similarity=0.263  Sum_probs=80.4

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCC---------Ccc---
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI---------DYD---  158 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~---------~~~---  158 (356)
                      .||+|||||++|+++|+.|+++ |++|+|+||.+.+......   +    .......+.|+++|+         .+.   
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~~-G~~v~viE~~~~~~~~g~~---i----~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~   73 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGRH-GYSVTMVERHPGLRPGGQA---I----DVRGPALDVLERMGLLAAAQEHKTRIRGAS   73 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCCCCCCCcee---e----eeCchHHHHHHhcCCHHHHHhhccCccceE
Confidence            3899999999999999999999 9999999998755321110   0    001111222333222         100   


Q ss_pred             ---ccC-----------------CeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeeccc
Q 018414          159 ---EQD-----------------NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH  218 (356)
Q Consensus       159 ---~~~-----------------~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~  218 (356)
                         ..+                 ......+...+.+.|.+.+  ..|++++++++++++..+++.+. +...+       
T Consensus        74 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~--~~~v~i~~~~~v~~i~~~~~~v~-v~~~d-------  143 (372)
T PRK05868         74 FVDRDGNELFRDTESTPTGGPVNSPDIELLRDDLVELLYGAT--QPSVEYLFDDSISTLQDDGDSVR-VTFER-------  143 (372)
T ss_pred             EEeCCCCEEeecccccccCCCCCCceEEEEHHHHHHHHHHhc--cCCcEEEeCCEEEEEEecCCeEE-EEECC-------
Confidence               000                 0011223345555444332  46899999999999987666544 43432       


Q ss_pred             CCCCCCCCeEEEcCEEEEcCCCCCCCC
Q 018414          219 DTQSCMDPNVMEAKVVVSSCGHDGPFG  245 (356)
Q Consensus       219 ~~~~~g~~~~i~Ak~VI~AtGg~~~~~  245 (356)
                             ..++++|.||.|+|..|.+.
T Consensus       144 -------g~~~~adlvIgADG~~S~vR  163 (372)
T PRK05868        144 -------AAAREFDLVIGADGLHSNVR  163 (372)
T ss_pred             -------CCeEEeCEEEECCCCCchHH
Confidence                   35689999999999877543

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=99.15  E-value=5.8e-10  Score=110.89  Aligned_cols=140  Identities=16%  Similarity=0.103  Sum_probs=83.8

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccc-hhh-------hccchHHHHHH--------Hh
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLF-SAM-------VVRKPAHIFLD--------EL  153 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~-~~~-------~~~~~~~~~l~--------~~  153 (356)
                      ..+|+|||||++||+||.+|.+. |++|+|+||+..+||......... ...       .......+.|.        .+
T Consensus        10 ~~~VaIIGAG~aGL~aA~~l~~~-G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f   88 (461)
T PLN02172         10 SQHVAVIGAGAAGLVAARELRRE-GHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGY   88 (461)
T ss_pred             CCCEEEECCcHHHHHHHHHHHhc-CCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccC
Confidence            47999999999999999999999 999999999998887532211100 000       00000011111        11


Q ss_pred             -CCCcccc-----CCeEEEechHHHHHHHHHHHHcCCCcE--EEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCC
Q 018414          154 -GIDYDEQ-----DNYVVIKHAALFTSTIMSKLLARPNVK--LFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMD  225 (356)
Q Consensus       154 -G~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~gv~--i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~  225 (356)
                       .+++...     ...+.+....++.+.|.+.+. +.|+.  ++++++|+.+...++++. |.+.+      ..    +.
T Consensus        89 ~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~-~fgl~~~I~~~t~V~~V~~~~~~w~-V~~~~------~~----~~  156 (461)
T PLN02172         89 RDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAR-EFKIEEMVRFETEVVRVEPVDGKWR-VQSKN------SG----GF  156 (461)
T ss_pred             CCCCCCcccccccCcCCCCCCHHHHHHHHHHHHH-HcCCcceEEecCEEEEEeecCCeEE-EEEEc------CC----Cc
Confidence             1222111     011122345667666655554 67877  899999999988766543 33321      00    11


Q ss_pred             CeEEEcCEEEEcCCCCC
Q 018414          226 PNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       226 ~~~i~Ak~VI~AtGg~~  242 (356)
                      ..+..+|.||+|+|.++
T Consensus       157 ~~~~~~d~VIvAtG~~~  173 (461)
T PLN02172        157 SKDEIFDAVVVCNGHYT  173 (461)
T ss_pred             eEEEEcCEEEEeccCCC
Confidence            23567999999999765

>TIGR02053 MerA mercuric reductase

Probab=99.15  E-value=2.6e-10  Score=113.80  Aligned_cols=131  Identities=18%  Similarity=0.219  Sum_probs=81.4

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchH-HHHHHH--hCCCccc-cCCeEE-
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA-HIFLDE--LGIDYDE-QDNYVV-  165 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~-~~~l~~--~G~~~~~-~~~~~~-  165 (356)
                      |||+|||||++|+.+|+.|++. |++|+|+||.. .||+|.+.||++.+.+..... .+++.+  +|+.... ..+|.. 
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~-g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   78 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAEL-GASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGEL   78 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHH
Confidence            7999999999999999999999 99999999975 899999999999888765432 223222  2221110 011111 


Q ss_pred             EechHHHHHHH----HHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414          166 IKHAALFTSTI----MSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       166 ~~~~~~~~~~l----~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~  241 (356)
                      ..+...+...+    ++.+.++.|++++.++. ..  .++..   +.+.+             ....+++|+||+|||..
T Consensus        79 ~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~-~~--~~~~~---v~v~~-------------g~~~~~~~~lIiATGs~  139 (463)
T TIGR02053        79 LEGKREVVEELRHEKYEDVLSSYGVDYLRGRA-RF--KDPKT---VKVDL-------------GREVRGAKRFLIATGAR  139 (463)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHhCCcEEEEEEE-EE--ccCCE---EEEcC-------------CeEEEEeCEEEEcCCCC
Confidence            11112222222    22334467999988743 21  12222   22221             12458899999999975


Q ss_pred             C
Q 018414          242 G  242 (356)
Q Consensus       242 ~  242 (356)
                      .
T Consensus       140 p  140 (463)
T TIGR02053       140 P  140 (463)
T ss_pred             C
Confidence            4

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=99.14  E-value=1e-09  Score=107.07  Aligned_cols=137  Identities=18%  Similarity=0.166  Sum_probs=81.8

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCC-CccccCCccchhhhccchHHHHHHHhCC---------Ccc-
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPG-GGAWLGGQLFSAMVVRKPAHIFLDELGI---------DYD-  158 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~G-g~~~~~g~~~~~~~~~~~~~~~l~~~G~---------~~~-  158 (356)
                      .+||+|||||++|+++|+.|++. |++|+|+||.+... ......+.      ......+.|+++|+         +.. 
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~-G~~v~viE~~~~~~~~~~~~a~~------l~~~~~~~L~~lGl~~~l~~~~~~~~~   74 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKA-GIDNVILERQSRDYVLGRIRAGV------LEQGTVDLLREAGVDERMDREGLVHEG   74 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHC-CCCEEEEECCCCcccCCceeEee------ECHHHHHHHHHCCChHHHHhcCceecc
Confidence            37999999999999999999999 99999999987421 00000011      11223334444443         111 


Q ss_pred             ----ccCC------------eEE-EechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCC
Q 018414          159 ----EQDN------------YVV-IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQ  221 (356)
Q Consensus       159 ----~~~~------------~~~-~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~  221 (356)
                          ....            ... ......+...|++.+. +.|+.++++++++.+...++....|....          
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~~g~~~~~~~~~v~~~~~~~~~~~V~~~~----------  143 (390)
T TIGR02360        75 TEIAFDGQRFRIDLKALTGGKTVMVYGQTEVTRDLMEARE-AAGLTTVYDADDVRLHDLAGDRPYVTFER----------  143 (390)
T ss_pred             eEEeeCCEEEEEeccccCCCceEEEeCHHHHHHHHHHHHH-hcCCeEEEeeeeEEEEecCCCccEEEEEE----------
Confidence                0000            000 1122455567777765 56889999988887765332222343320          


Q ss_pred             CCCCCeEEEcCEEEEcCCCCCCCC
Q 018414          222 SCMDPNVMEAKVVVSSCGHDGPFG  245 (356)
Q Consensus       222 ~~g~~~~i~Ak~VI~AtGg~~~~~  245 (356)
                       +|+..+++||.||.|+|.+|.+.
T Consensus       144 -~g~~~~i~adlvIGADG~~S~VR  166 (390)
T TIGR02360       144 -DGERHRLDCDFIAGCDGFHGVSR  166 (390)
T ss_pred             -CCeEEEEEeCEEEECCCCchhhH
Confidence             11235799999999999887543

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.14  E-value=4e-10  Score=112.49  Aligned_cols=53  Identities=30%  Similarity=0.417  Sum_probs=48.1

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRK  144 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~  144 (356)
                      +|||+|||||++|+.||+.|++. |++|+|||++ .+||+|.+.||++.+.+...
T Consensus         4 ~~DvvIIG~GpaG~~AA~~aa~~-G~~V~lie~~-~~GG~c~~~gciPsk~l~~~   56 (466)
T PRK07818          4 HYDVVVLGAGPGGYVAAIRAAQL-GLKTAVVEKK-YWGGVCLNVGCIPSKALLRN   56 (466)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhC-CCeEEEEecC-CCCCceecCCccccHHHHhh
Confidence            59999999999999999999999 9999999996 68999999999998776544

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=99.13  E-value=7e-10  Score=103.61  Aligned_cols=112  Identities=21%  Similarity=0.292  Sum_probs=75.2

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      |||+|||||++|+++|..|++. |.+|+|+|+.. +||..+....              +..+       ..++......
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~-g~~v~lie~~~-~gg~~~~~~~--------------~~~~-------~~~~~~~~~~   57 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARA-NLKTLIIEGME-PGGQLTTTTE--------------VENY-------PGFPEGISGP   57 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHC-CCCEEEEeccC-CCcceeeccc--------------cccc-------CCCCCCCChH
Confidence            6999999999999999999999 99999999885 5543321110              0000       0011011224


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      ++...+.+.+. +.|+++++ ++|+.+..+++.+. +...              +..++++|+||+|+|...
T Consensus        58 ~~~~~l~~~~~-~~gv~~~~-~~v~~v~~~~~~~~-v~~~--------------~~~~~~~d~liiAtG~~~  112 (300)
T TIGR01292        58 ELMEKMKEQAV-KFGAEIIY-EEVIKVDLSDRPFK-VKTG--------------DGKEYTAKAVIIATGASA  112 (300)
T ss_pred             HHHHHHHHHHH-HcCCeEEE-EEEEEEEecCCeeE-EEeC--------------CCCEEEeCEEEECCCCCc
Confidence            55566666555 56899998 78999887655432 3332              135799999999999765

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=99.13  E-value=1.5e-09  Score=112.11  Aligned_cols=140  Identities=21%  Similarity=0.224  Sum_probs=82.1

Q ss_pred             cccEEEECCCHHHHHHHHHhhc-CCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCC---------C---
Q 018414           90 DTDVVVVGAGSAGLSCAYELSK-NPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI---------D---  156 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~-~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~---------~---  156 (356)
                      ++||+||||||+||++|+.|++ . |++|+||||.+.+....- +..      ......+.|+++|+         .   
T Consensus        32 ~~dVlIVGAGPaGL~lA~~Lar~~-Gi~v~IiE~~~~~~~~gr-A~g------l~prtleiL~~lGl~d~l~~~g~~~~~  103 (634)
T PRK08294         32 EVDVLIVGCGPAGLTLAAQLSAFP-DITTRIVERKPGRLELGQ-ADG------IACRTMEMFQAFGFAERILKEAYWINE  103 (634)
T ss_pred             CCCEEEECCCHHHHHHHHHHhcCC-CCcEEEEEcCCCCCCCCe-eeE------EChHHHHHHHhccchHHHHhhcccccc
Confidence            6899999999999999999999 7 999999999864321000 000      01111222222221         0   


Q ss_pred             ---cc-------------------c-cCCe-EEEechHHHHHHHHHHHHcCC-CcEEEcCeEEEEEEEeCC--eEEEEEE
Q 018414          157 ---YD-------------------E-QDNY-VVIKHAALFTSTIMSKLLARP-NVKLFNAVAAEDLIVKGG--RVGGVVT  209 (356)
Q Consensus       157 ---~~-------------------~-~~~~-~~~~~~~~~~~~l~~~~~~~~-gv~i~~~~~v~~i~~~~~--~v~gv~~  209 (356)
                         |.                   . ...+ ....+...+.+.|++.+.+.. ++++.++++++++..++.  ..+.+.+
T Consensus       104 ~~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l  183 (634)
T PRK08294        104 TAFWKPDPADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTL  183 (634)
T ss_pred             eEEEcCCCccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEE
Confidence               00                   0 0011 123455667777777776332 368899999999987642  1122333


Q ss_pred             cceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          210 NWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       210 ~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      .+      .++..+++..+++||+||.|+|++|.
T Consensus       184 ~~------~~~~~~g~~~tv~A~~lVGaDGa~S~  211 (634)
T PRK08294        184 RR------TDGEHEGEEETVRAKYVVGCDGARSR  211 (634)
T ss_pred             EE------CCCCCCCceEEEEeCEEEECCCCchH
Confidence            21      10001123468999999999997763

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=99.12  E-value=5.3e-10  Score=108.80  Aligned_cols=131  Identities=17%  Similarity=0.233  Sum_probs=81.3

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCc-cccCCccchhhhccchHHHHHH-Hh-C-C--Ccccc----C
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG-AWLGGQLFSAMVVRKPAHIFLD-EL-G-I--DYDEQ----D  161 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~-~~~~g~~~~~~~~~~~~~~~l~-~~-G-~--~~~~~----~  161 (356)
                      ||+|||||++|+++|+.|++. |++|+|||+.+..++. .|.   ++...+......+... .+ + .  .+...    .
T Consensus         1 DviIiGaG~AGl~~A~~la~~-g~~v~liE~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARP-GLRVQLIEPHPPIPGNHTYG---VWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLG   76 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhC-CCeEEEEccCCCCCCCcccc---ccHhhhhhhchhhHHhhcCCCceEEecCCcchhcC
Confidence            899999999999999999999 9999999998765543 221   1111000000001111 11 0 0  00000    1


Q ss_pred             CeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414          162 NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       162 ~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~  241 (356)
                      ..+...+...+.+.|.+.+. +.|++++.. +++.+..+++....+.+.+              ..+++|+.||+|+|..
T Consensus        77 ~~~~~i~~~~l~~~l~~~~~-~~gv~~~~~-~v~~i~~~~~~~~~v~~~~--------------g~~~~a~~VI~A~G~~  140 (388)
T TIGR01790        77 TAYGSVDSTRLHEELLQKCP-EGGVLWLER-KAIHAEADGVALSTVYCAG--------------GQRIQARLVIDARGFG  140 (388)
T ss_pred             CceeEEcHHHHHHHHHHHHH-hcCcEEEcc-EEEEEEecCCceeEEEeCC--------------CCEEEeCEEEECCCCc
Confidence            11223456788888888876 458988754 7888876644444455431              3579999999999987


Q ss_pred             C
Q 018414          242 G  242 (356)
Q Consensus       242 ~  242 (356)
                      +
T Consensus       141 s  141 (388)
T TIGR01790       141 P  141 (388)
T ss_pred             h
Confidence            6

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=99.11  E-value=7.9e-10  Score=113.94  Aligned_cols=65  Identities=20%  Similarity=0.142  Sum_probs=48.8

Q ss_pred             chHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEe--CCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          168 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK--GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       168 ~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~--~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      +...+...|.+.+. +.|++++++++|+++..+  ++++.+|.+.+      ..+   ++..+++||.||+|+|.++
T Consensus       230 dp~rl~~al~~~A~-~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d------~~t---g~~~~i~a~~VVnAaGaws  296 (627)
T PLN02464        230 NDSRLNVALACTAA-LAGAAVLNYAEVVSLIKDESTGRIVGARVRD------NLT---GKEFDVYAKVVVNAAGPFC  296 (627)
T ss_pred             cHHHHHHHHHHHHH-hCCcEEEeccEEEEEEEecCCCcEEEEEEEE------CCC---CcEEEEEeCEEEECCCHhH
Confidence            45667777777776 679999999999999887  47788877632      111   1234789999999999875

>PTZ00052 thioredoxin reductase; Provisional

Probab=99.11  E-value=5.1e-10  Score=112.60  Aligned_cols=54  Identities=24%  Similarity=0.340  Sum_probs=47.5

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC--------CCCCccccCCccchhhhccc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV--------SPGGGAWLGGQLFSAMVVRK  144 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~--------~~Gg~~~~~g~~~~~~~~~~  144 (356)
                      .|||+|||||++|+.||+.|+++ |++|+|||+..        .+||.|.+.||++.+.+...
T Consensus         5 ~yDviVIG~GpaG~~AA~~aa~~-G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~   66 (499)
T PTZ00052          5 MYDLVVIGGGSGGMAAAKEAAAH-GKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYA   66 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhC-CCeEEEEeccCCCCccccccccceeccccccchHHHHHH
Confidence            49999999999999999999999 99999999731        37999999999998766554

>PRK06753 hypothetical protein; Provisional

Probab=99.11  E-value=9.5e-10  Score=106.40  Aligned_cols=126  Identities=15%  Similarity=0.205  Sum_probs=79.0

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCC---------Ccc----
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI---------DYD----  158 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~---------~~~----  158 (356)
                      ||+|||||++|+++|+.|+++ |++|+|+||.+.+....  .+     ........+.|+.+|+         +..    
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~-g~~v~v~E~~~~~~~~g--~g-----i~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~   73 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQ-GHEVKVFEKNESVKEVG--AG-----IGIGDNVIKKLGNHDLAKGIKNAGQILSTMNL   73 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCcccccc--cc-----eeeChHHHHHHHhcChHHHHHhcCCcccceeE
Confidence            799999999999999999999 99999999997553211  01     0011112222222222         110    


Q ss_pred             --ccCC-----------eEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCC
Q 018414          159 --EQDN-----------YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMD  225 (356)
Q Consensus       159 --~~~~-----------~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~  225 (356)
                        ..+.           .....+...+.+.|++.+.   +.+++++++++++..+++.+. +...              +
T Consensus        74 ~~~~g~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~---~~~i~~~~~v~~i~~~~~~v~-v~~~--------------~  135 (373)
T PRK06753         74 LDDKGTLLNKVKLKSNTLNVTLHRQTLIDIIKSYVK---EDAIFTGKEVTKIENETDKVT-IHFA--------------D  135 (373)
T ss_pred             EcCCCCEEeecccccCCccccccHHHHHHHHHHhCC---CceEEECCEEEEEEecCCcEE-EEEC--------------C
Confidence              0010           0112234556666665542   468999999999987766553 3332              1


Q ss_pred             CeEEEcCEEEEcCCCCCC
Q 018414          226 PNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       226 ~~~i~Ak~VI~AtGg~~~  243 (356)
                      +.++++|.||.|+|.++.
T Consensus       136 g~~~~~~~vigadG~~S~  153 (373)
T PRK06753        136 GESEAFDLCIGADGIHSK  153 (373)
T ss_pred             CCEEecCEEEECCCcchH
Confidence            356899999999997764

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=99.11  E-value=1.7e-09  Score=112.48  Aligned_cols=59  Identities=15%  Similarity=0.124  Sum_probs=44.6

Q ss_pred             chHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          168 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       168 ~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      +...+...|++.+. + |++++++++|+++..+++.+. +.+.              +...++++.||+|+|.++.
T Consensus       406 ~p~~l~~aL~~~a~-~-Gv~i~~~~~V~~i~~~~~~~~-v~t~--------------~g~~~~ad~VV~A~G~~s~  464 (662)
T PRK01747        406 CPAELCRALLALAG-Q-QLTIHFGHEVARLEREDDGWQ-LDFA--------------GGTLASAPVVVLANGHDAA  464 (662)
T ss_pred             CHHHHHHHHHHhcc-c-CcEEEeCCEeeEEEEeCCEEE-EEEC--------------CCcEEECCEEEECCCCCcc
Confidence            34567777777775 5 999999999999988777654 4443              1345789999999998763

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=99.11  E-value=3.6e-10  Score=116.41  Aligned_cols=56  Identities=21%  Similarity=0.302  Sum_probs=50.8

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEecc-CCCCCccccCCccchhhhccch
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS-VSPGGGAWLGGQLFSAMVVRKP  145 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~-~~~Gg~~~~~g~~~~~~~~~~~  145 (356)
                      .+|||+|||+|++|..+|+.+++. |++|+|||+. ..+||+|.+.||++.+.+....
T Consensus       115 ~~yDviVIG~G~gG~~aA~~aa~~-G~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a  171 (659)
T PTZ00153        115 EEYDVGIIGCGVGGHAAAINAMER-GLKVIIFTGDDDSIGGTCVNVGCIPSKALLYAT  171 (659)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCCCccccceeEeCCcchHHHHHHH
Confidence            369999999999999999999999 9999999975 3689999999999999887764

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=99.09  E-value=1e-09  Score=109.30  Aligned_cols=132  Identities=17%  Similarity=0.299  Sum_probs=84.2

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchH----HHHHHHhCCCcccc---CCeE
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA----HIFLDELGIDYDEQ---DNYV  164 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~----~~~l~~~G~~~~~~---~~~~  164 (356)
                      +|+|||+|++|+.+|..|++. |++|+||||+ ..||+|.+.||++.+.+.+...    .+....+|+.+...   .+|.
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~-g~~V~lie~~-~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~   79 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQN-GKNVTLIDEA-DLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDWK   79 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhC-CCcEEEEECC-cccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCHH
Confidence            699999999999999999999 9999999997 5899999999999888766432    22334567654311   1121


Q ss_pred             EE-echHHHHHHH---HHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCC
Q 018414          165 VI-KHAALFTSTI---MSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGH  240 (356)
Q Consensus       165 ~~-~~~~~~~~~l---~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg  240 (356)
                      .. .+.......+   .+...++.+++++.+. +..+  ++..+. |...+             ...++++|+||+|||.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-a~~~--~~~~v~-v~~~~-------------~~~~~~~d~lviATGs  142 (458)
T PRK06912         80 QMQARKSQIVTQLVQGIQYLMKKNKIKVIQGK-ASFE--TDHRVR-VEYGD-------------KEEVVDAEQFIIAAGS  142 (458)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEE-EEEc--cCCEEE-EeeCC-------------CcEEEECCEEEEeCCC
Confidence            11 1111222211   2233346689888774 3222  333332 22211             1257999999999997


Q ss_pred             CC
Q 018414          241 DG  242 (356)
Q Consensus       241 ~~  242 (356)
                      ..
T Consensus       143 ~p  144 (458)
T PRK06912        143 EP  144 (458)
T ss_pred             CC
Confidence            64

>PRK07846 mycothione reductase; Reviewed

Probab=99.09  E-value=4.6e-10  Score=111.59  Aligned_cols=129  Identities=20%  Similarity=0.234  Sum_probs=80.8

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchH-HH---HHHHhCCCccc-cCCeE
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA-HI---FLDELGIDYDE-QDNYV  164 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~-~~---~l~~~G~~~~~-~~~~~  164 (356)
                      +||++|||+|++|..+|..+  . |++|+|+|+. .+||+|.+.||++.+.+..... .+   ...++|+.... .-+|.
T Consensus         1 ~yD~vVIG~G~~g~~aa~~~--~-G~~V~lie~~-~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~   76 (451)
T PRK07846          1 HYDLIIIGTGSGNSILDERF--A-DKRIAIVEKG-TFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRWP   76 (451)
T ss_pred             CCCEEEECCCHHHHHHHHHH--C-CCeEEEEeCC-CCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCHH
Confidence            38999999999999988763  6 9999999986 6899999999999998776532 22   23346664321 11121


Q ss_pred             E-EechHHHHHHHH----HHH-HcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcC
Q 018414          165 V-IKHAALFTSTIM----SKL-LARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSC  238 (356)
Q Consensus       165 ~-~~~~~~~~~~l~----~~~-~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~At  238 (356)
                      . ..+.....+.+.    +.. .+..|++++.+.... +  ++..|   .+.              +..++++|+||+||
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~-~--~~~~V---~v~--------------~g~~~~~d~lViAT  136 (451)
T PRK07846         77 DIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARF-I--GPKTL---RTG--------------DGEEITADQVVIAA  136 (451)
T ss_pred             HHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEE-e--cCCEE---EEC--------------CCCEEEeCEEEEcC
Confidence            1 111112222221    111 335688888874322 2  33332   222              12469999999999


Q ss_pred             CCCC
Q 018414          239 GHDG  242 (356)
Q Consensus       239 Gg~~  242 (356)
                      |+..
T Consensus       137 Gs~p  140 (451)
T PRK07846        137 GSRP  140 (451)
T ss_pred             CCCC
Confidence            9764

>TIGR00136 gidA glucose-inhibited division protein A

Probab=99.08  E-value=2.3e-09  Score=108.33  Aligned_cols=136  Identities=24%  Similarity=0.321  Sum_probs=86.2

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc-cc--CCccchhhhccc------hHHHHHHHhCCCcccc-
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA-WL--GGQLFSAMVVRK------PAHIFLDELGIDYDEQ-  160 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~-~~--~g~~~~~~~~~~------~~~~~l~~~G~~~~~~-  160 (356)
                      |||+|||+|++|+.+|+.+++. |.+|+|+|+.....|.+ ++  -+......+.+.      ......+..++.|... 
T Consensus         1 yDViVIGaG~AGl~aA~ala~~-G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln   79 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARM-GAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLN   79 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHC-CCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheecc
Confidence            6999999999999999999999 99999999975333221 10  011111111110      1112223333333221 


Q ss_pred             ---CCeEE----EechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEe-CCeEEEEEEcceeeecccCCCCCCCCeEEEcC
Q 018414          161 ---DNYVV----IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAK  232 (356)
Q Consensus       161 ---~~~~~----~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak  232 (356)
                         .....    ..+...+...+.+.+.+..|++++.+ .|+++..+ ++++.+|.+.+              +..++|+
T Consensus        80 ~skgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~--------------G~~I~Ad  144 (617)
T TIGR00136        80 SSKGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQD--------------GLKFRAK  144 (617)
T ss_pred             cCCCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECC--------------CCEEECC
Confidence               11111    22345566677777776668999866 78888776 67898998853              3579999


Q ss_pred             EEEEcCCCCC
Q 018414          233 VVVSSCGHDG  242 (356)
Q Consensus       233 ~VI~AtGg~~  242 (356)
                      .||+|||.+.
T Consensus       145 ~VILATGtfL  154 (617)
T TIGR00136       145 AVIITTGTFL  154 (617)
T ss_pred             EEEEccCccc
Confidence            9999999873

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=99.08  E-value=3.8e-09  Score=105.75  Aligned_cols=64  Identities=9%  Similarity=0.110  Sum_probs=44.9

Q ss_pred             chHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCC-eEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          168 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG-RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       168 ~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~-~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      +...+...|.+.+. +.|++++++++|+++..+++ .+. +.+.+      .+   .++..+++|++||+|+|+++
T Consensus       176 dp~~l~~aL~~~a~-~~Gv~i~~~t~V~~i~~~~~~~v~-v~~~~------~~---~g~~~~i~A~~VV~AAG~~s  240 (483)
T TIGR01320       176 DFGALTKQLLGYLV-QNGTTIRFGHEVRNLKRQSDGSWT-VTVKN------TR---TGGKRTLNTRFVFVGAGGGA  240 (483)
T ss_pred             CHHHHHHHHHHHHH-hCCCEEEeCCEEEEEEEcCCCeEE-EEEee------cc---CCceEEEECCEEEECCCcch
Confidence            44677788888876 56999999999999987643 333 33211      00   11234699999999999876

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=99.07  E-value=2e-09  Score=106.55  Aligned_cols=137  Identities=20%  Similarity=0.264  Sum_probs=79.7

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCe-EEEEeccCCCCCccccCCccchhhhccchHHHHHHHh-CCCccccCCeEEE
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQ-IAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDEL-GIDYDEQDNYVVI  166 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~-V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~-G~~~~~~~~~~~~  166 (356)
                      .++||+|||||++|+++|++|.+. |.. ++|+||+..+||+-|..  .+..+..+.+  .++..+ +.+|.....|+..
T Consensus         7 ~~~~v~IIGaG~sGlaaa~~L~~~-g~~~~~i~Ek~~~~Gg~W~~~--ry~~l~~~~p--~~~~~~~~~p~~~~~~~~~~   81 (443)
T COG2072           7 THTDVAIIGAGQSGLAAAYALKQA-GVPDFVIFEKRDDVGGTWRYN--RYPGLRLDSP--KWLLGFPFLPFRWDEAFAPF   81 (443)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHc-CCCcEEEEEccCCcCCcchhc--cCCceEECCc--hheeccCCCccCCcccCCCc
Confidence            368999999999999999999999 888 99999999888763321  1111111111  111111 1223212233333


Q ss_pred             echHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeC-CeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414          167 KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF  244 (356)
Q Consensus       167 ~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~  244 (356)
                      ....++....+++....  .++.+++.|+.+..++ +....|.+..+            ...++.+|.||+|||.++..
T Consensus        82 ~~~~~y~~~~~~~y~~~--~~i~~~~~v~~~~~~~~~~~w~V~~~~~------------~~~~~~a~~vV~ATG~~~~P  146 (443)
T COG2072          82 AEIKDYIKDYLEKYGLR--FQIRFNTRVEVADWDEDTKRWTVTTSDG------------GTGELTADFVVVATGHLSEP  146 (443)
T ss_pred             ccHHHHHHHHHHHcCce--eEEEcccceEEEEecCCCCeEEEEEcCC------------CeeeEecCEEEEeecCCCCC
Confidence            33344444444444333  3445555555555543 34555665421            11227899999999987643

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=99.06  E-value=9.4e-10  Score=100.92  Aligned_cols=140  Identities=22%  Similarity=0.297  Sum_probs=92.3

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccc------cCCc--------------c---------------
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW------LGGQ--------------L---------------  136 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~------~~g~--------------~---------------  136 (356)
                      .|||||+|.|||+++..+-.. +-.|+++||...+||.+.      ++.+              +               
T Consensus        11 pvvVIGgGLAGLsasn~iin~-gg~V~llek~~s~GGNSiKAsSGINgA~TetQ~~~~i~Dsp~lf~~Dtl~saksk~~~   89 (477)
T KOG2404|consen   11 PVVVIGGGLAGLSASNDIINK-GGIVILLEKAGSIGGNSIKASSGINGAGTETQEKLHIKDSPELFVKDTLSSAKSKGVP   89 (477)
T ss_pred             cEEEECCchhhhhhHHHHHhc-CCeEEEEeccCCcCCcceecccCcCCCchhhhhhcccccChHHHhhhhhhhcccCCcH
Confidence            699999999999999999988 667999999998887653      1111              0               


Q ss_pred             --chhhhcc-chHHHHHHH-hCCCcccc---CC--eEE-------EechHHHHHHHHH----HHHcCC-CcEEEcCeEEE
Q 018414          137 --FSAMVVR-KPAHIFLDE-LGIDYDEQ---DN--YVV-------IKHAALFTSTIMS----KLLARP-NVKLFNAVAAE  195 (356)
Q Consensus       137 --~~~~~~~-~~~~~~l~~-~G~~~~~~---~~--~~~-------~~~~~~~~~~l~~----~~~~~~-gv~i~~~~~v~  195 (356)
                        ...+..+ ...++||.. +++..+..   ..  .+.       .....++...|..    ....++ -++|..+++|+
T Consensus        90 eLm~~La~~S~~AvewL~~ef~lkld~la~lgGHSvpRTHr~s~plppgfei~~~L~~~l~k~as~~pe~~ki~~nskvv  169 (477)
T KOG2404|consen   90 ELMEKLAANSASAVEWLRGEFDLKLDLLAQLGGHSVPRTHRSSGPLPPGFEIVKALSTRLKKKASENPELVKILLNSKVV  169 (477)
T ss_pred             HHHHHHHhcCHHHHHHHhhhcccchHHHHHhcCCCCCcccccCCCCCCchHHHHHHHHHHHHhhhcChHHHhhhhcceee
Confidence              0011111 145788875 66654321   00  000       0011233333333    333232 38899999999


Q ss_pred             EEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          196 DLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       196 ~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      +|..++|+|.||...+          .+|+...+.++.||+||||++
T Consensus       170 ~il~n~gkVsgVeymd----------~sgek~~~~~~~VVlatGGf~  206 (477)
T KOG2404|consen  170 DILRNNGKVSGVEYMD----------ASGEKSKIIGDAVVLATGGFG  206 (477)
T ss_pred             eeecCCCeEEEEEEEc----------CCCCccceecCceEEecCCcC
Confidence            9999999999998753          133457788999999999987

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=99.05  E-value=4.7e-09  Score=105.05  Aligned_cols=60  Identities=12%  Similarity=0.103  Sum_probs=45.4

Q ss_pred             chHHHHHHHHHHHHcC---CC--cEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          168 HAALFTSTIMSKLLAR---PN--VKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       168 ~~~~~~~~l~~~~~~~---~g--v~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      +...+...+.+.+.+.   .|  ++++++++|++|..+++.++.|.+.               ..+++|+.||+|+|+++
T Consensus       209 d~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~---------------~G~i~A~~VVvaAG~~S  273 (497)
T PTZ00383        209 DYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTN---------------RGEIRARFVVVSACGYS  273 (497)
T ss_pred             CHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEEC---------------CCEEEeCEEEECcChhH
Confidence            3456777777777630   46  8899999999999876666666653               24699999999999876

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=99.04  E-value=1.7e-09  Score=108.08  Aligned_cols=135  Identities=21%  Similarity=0.309  Sum_probs=86.2

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccch-H---HHHHHHhCCCccc----cCC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKP-A---HIFLDELGIDYDE----QDN  162 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~-~---~~~l~~~G~~~~~----~~~  162 (356)
                      .||+|||+|++|+.+|..|++. |.+|+|+||. ..||.|.+.||++.+.+.... .   .+....+|+....    .-+
T Consensus         2 ~~vvviG~G~~G~~~a~~~~~~-g~~v~~~e~~-~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~   79 (466)
T PRK07845          2 TRIVIIGGGPGGYEAALVAAQL-GADVTVIERD-GLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVD   79 (466)
T ss_pred             CcEEEECCCHHHHHHHHHHHhC-CCeEEEEEcc-CCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccC
Confidence            3899999999999999999999 9999999997 489999999999988766542 2   2334456765421    111


Q ss_pred             eEEE-echHHH----HHHHHHHHHcCCCcEEEcCeEEEEEE--EeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEE
Q 018414          163 YVVI-KHAALF----TSTIMSKLLARPNVKLFNAVAAEDLI--VKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVV  235 (356)
Q Consensus       163 ~~~~-~~~~~~----~~~l~~~~~~~~gv~i~~~~~v~~i~--~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI  235 (356)
                      |... .+...+    ...+.+.+. +.|++++.++ ++.+.  .+++.+. |...+            ++..++.+|+||
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~-~~gV~~~~g~-~~~~~~~~~~~~v~-V~~~~------------g~~~~~~~d~lV  144 (466)
T PRK07845         80 LPAVNARVKALAAAQSADIRARLE-REGVRVIAGR-GRLIDPGLGPHRVK-VTTAD------------GGEETLDADVVL  144 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HCCCEEEEEE-EEEeecccCCCEEE-EEeCC------------CceEEEecCEEE
Confidence            2111 111122    222233333 5699999884 43332  2333332 32211            112479999999


Q ss_pred             EcCCCCC
Q 018414          236 SSCGHDG  242 (356)
Q Consensus       236 ~AtGg~~  242 (356)
                      +|||...
T Consensus       145 iATGs~p  151 (466)
T PRK07845        145 IATGASP  151 (466)
T ss_pred             EcCCCCC
Confidence            9999765

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=99.03  E-value=1.9e-09  Score=104.68  Aligned_cols=128  Identities=23%  Similarity=0.325  Sum_probs=80.2

Q ss_pred             cEEEECCCHHHHHHHHHh--hcCCCCeEEEEeccCCCC--C-ccccCCccchhhhccchHHHHHHHhC-----CCcccc-
Q 018414           92 DVVVVGAGSAGLSCAYEL--SKNPNIQIAIIEQSVSPG--G-GAWLGGQLFSAMVVRKPAHIFLDELG-----IDYDEQ-  160 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~L--a~~~G~~V~llEk~~~~G--g-~~~~~g~~~~~~~~~~~~~~~l~~~G-----~~~~~~-  160 (356)
                      ||||||||+||+++|++|  ++. |.+|+|||+....+  . .+|.   ....-.   ...+.+....     +.+... 
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~-g~~Vllid~~~~~~~~~~~tW~---~~~~~~---~~~~~~v~~~w~~~~v~~~~~~   73 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARP-GLSVLLIDPKPKPPWPNDRTWC---FWEKDL---GPLDSLVSHRWSGWRVYFPDGS   73 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCC-CCEEEEEcCCccccccCCcccc---cccccc---cchHHHHheecCceEEEeCCCc
Confidence            899999999999999999  777 99999999987652  1 1221   110000   0011111111     111111 


Q ss_pred             ---CC-eEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEE
Q 018414          161 ---DN-YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVS  236 (356)
Q Consensus       161 ---~~-~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~  236 (356)
                         .. -+...+...+.+.+.+++. ..+ .++.++.|+++...++.+ .+.+.              ++.+++|+.||+
T Consensus        74 ~~~~~~~Y~~i~~~~f~~~l~~~~~-~~~-~~~~~~~V~~i~~~~~~~-~v~~~--------------~g~~i~a~~VvD  136 (374)
T PF05834_consen   74 RILIDYPYCMIDRADFYEFLLERAA-AGG-VIRLNARVTSIEETGDGV-LVVLA--------------DGRTIRARVVVD  136 (374)
T ss_pred             eEEcccceEEEEHHHHHHHHHHHhh-hCC-eEEEccEEEEEEecCceE-EEEEC--------------CCCEEEeeEEEE
Confidence               11 1224567888888888886 545 456677999998776633 33343              236899999999


Q ss_pred             cCCCCCC
Q 018414          237 SCGHDGP  243 (356)
Q Consensus       237 AtGg~~~  243 (356)
                      |+|..+.
T Consensus       137 a~g~~~~  143 (374)
T PF05834_consen  137 ARGPSSP  143 (374)
T ss_pred             CCCcccc
Confidence            9996544

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>TIGR03452 mycothione_red mycothione reductase

Probab=99.03  E-value=7.2e-10  Score=110.26  Aligned_cols=129  Identities=20%  Similarity=0.203  Sum_probs=79.9

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchH-HH---HHHHhCCCccc-cCCeE
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA-HI---FLDELGIDYDE-QDNYV  164 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~-~~---~l~~~G~~~~~-~~~~~  164 (356)
                      +|||+|||+|++|..+|..  .. |++|+|||+. .+||+|.+.||++.+.+..... .+   ...++|+.... .-+|.
T Consensus         2 ~yD~vvIG~G~~g~~aa~~--~~-g~~V~lie~~-~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~   77 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDPR--FA-DKRIAIVEKG-TFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSVRWP   77 (452)
T ss_pred             CcCEEEECCCHHHHHHHHH--HC-CCeEEEEeCC-CCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCccCHH
Confidence            5999999999999998654  46 9999999986 6899999999999998876532 22   33345654221 11121


Q ss_pred             EEec-hHH-HHHHHH----HHHH--cCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEE
Q 018414          165 VIKH-AAL-FTSTIM----SKLL--ARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVS  236 (356)
Q Consensus       165 ~~~~-~~~-~~~~l~----~~~~--~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~  236 (356)
                      .... ... ..+.+.    ....  ++.|++++.++.+..   +...|   .+.              +..++++|+||+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~---~~~~V---~~~--------------~g~~~~~d~lIi  137 (452)
T TIGR03452        78 DIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFV---GPRTL---RTG--------------DGEEITGDQIVI  137 (452)
T ss_pred             HHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEe---cCCEE---EEC--------------CCcEEEeCEEEE
Confidence            1111 011 111111    1111  236899998864332   33322   222              124689999999


Q ss_pred             cCCCCC
Q 018414          237 SCGHDG  242 (356)
Q Consensus       237 AtGg~~  242 (356)
                      |||...
T Consensus       138 ATGs~p  143 (452)
T TIGR03452       138 AAGSRP  143 (452)
T ss_pred             EECCCC
Confidence            999765

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=99.00  E-value=1.2e-09  Score=106.93  Aligned_cols=135  Identities=28%  Similarity=0.380  Sum_probs=90.8

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC-CCCCccccC--Cccchhhhccc------hHHHHHHHhCCCcccc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV-SPGGGAWLG--GQLFSAMVVRK------PAHIFLDELGIDYDEQ  160 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~-~~Gg~~~~~--g~~~~~~~~~~------~~~~~l~~~G~~~~~~  160 (356)
                      .|||+|||||.||+.||+++++. |.+++|+-.+. .+|--.|+.  |++-...+.+.      ..-...++.++.|...
T Consensus         4 ~~DVIVIGgGHAG~EAA~AaARm-G~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~L   82 (621)
T COG0445           4 EYDVIVIGGGHAGVEAALAAARM-GAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRML   82 (621)
T ss_pred             CCceEEECCCccchHHHHhhhcc-CCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhc
Confidence            49999999999999999999999 99999998763 233222221  11111112111      1224455667776432


Q ss_pred             ---CCeEE-----EechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCC-eEEEEEEcceeeecccCCCCCCCCeEEEc
Q 018414          161 ---DNYVV-----IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG-RVGGVVTNWALVSMNHDTQSCMDPNVMEA  231 (356)
Q Consensus       161 ---~~~~~-----~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~-~v~gv~~~~~~~~~~~~~~~~g~~~~i~A  231 (356)
                         ....+     ......|...+.+.+.+..|+.++.+ .|++++.+++ +|.||.+..              +..|.|
T Consensus        83 N~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~e~~~~v~GV~t~~--------------G~~~~a  147 (621)
T COG0445          83 NSSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQG-EVEDLIVEEGQRVVGVVTAD--------------GPEFHA  147 (621)
T ss_pred             cCCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHhhcCCCeEEEEEeCC--------------CCeeec
Confidence               11111     11223455566666777889999888 7999998777 699999864              478999


Q ss_pred             CEEEEcCCC
Q 018414          232 KVVVSSCGH  240 (356)
Q Consensus       232 k~VI~AtGg  240 (356)
                      +.||++||-
T Consensus       148 ~aVVlTTGT  156 (621)
T COG0445         148 KAVVLTTGT  156 (621)
T ss_pred             CEEEEeecc
Confidence            999999994

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=99.00  E-value=4.9e-09  Score=106.07  Aligned_cols=114  Identities=23%  Similarity=0.302  Sum_probs=78.1

Q ss_pred             CCcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEe
Q 018414           88 YADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIK  167 (356)
Q Consensus        88 ~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~  167 (356)
                      ...|||+|||||++|++||.+|++. |++|+|+++.  +||.....                   .+++  ....++ ..
T Consensus       209 ~~~~dvvIIGgGpaGl~aA~~la~~-G~~v~li~~~--~GG~~~~~-------------------~~~~--~~~~~~-~~  263 (517)
T PRK15317        209 KDPYDVLVVGGGPAGAAAAIYAARK-GIRTGIVAER--FGGQVLDT-------------------MGIE--NFISVP-ET  263 (517)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecC--CCCeeecc-------------------Cccc--ccCCCC-CC
Confidence            3469999999999999999999999 9999999864  55533110                   0000  000000 12


Q ss_pred             chHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          168 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       168 ~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      ...++.+.+.+.+. +.|++++++++|+++..+++.+ .+.+.              +..+++++.||+|||...
T Consensus       264 ~~~~l~~~l~~~~~-~~gv~i~~~~~V~~I~~~~~~~-~V~~~--------------~g~~i~a~~vViAtG~~~  322 (517)
T PRK15317        264 EGPKLAAALEEHVK-EYDVDIMNLQRASKLEPAAGLI-EVELA--------------NGAVLKAKTVILATGARW  322 (517)
T ss_pred             CHHHHHHHHHHHHH-HCCCEEEcCCEEEEEEecCCeE-EEEEC--------------CCCEEEcCEEEECCCCCc
Confidence            34566677776665 5689999999999998765433 33332              135699999999999754

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=98.98  E-value=1.3e-08  Score=102.02  Aligned_cols=37  Identities=27%  Similarity=0.376  Sum_probs=33.1

Q ss_pred             cccEEEECCCHHHHHHHHHhhcC-CCCeEEEEeccCCC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSP  126 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~-~G~~V~llEk~~~~  126 (356)
                      ++||+|||||+.|+++|++|++. ++.+|+||||...+
T Consensus         5 ~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~   42 (494)
T PRK05257          5 KTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGV   42 (494)
T ss_pred             cceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCch
Confidence            58999999999999999999983 48999999998654

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=98.98  E-value=5.9e-09  Score=97.65  Aligned_cols=60  Identities=30%  Similarity=0.448  Sum_probs=42.7

Q ss_pred             HHHHHHHcCCCcEEEcCeEEEEEEEe--CCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          175 TIMSKLLARPNVKLFNAVAAEDLIVK--GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       175 ~l~~~~~~~~gv~i~~~~~v~~i~~~--~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      .++..+.++.|++|+.++.|++|+.+  ++++.+|.+.+.      ++.  .....+.+|.||+|.|+.+
T Consensus       197 ~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~------~~~--~~~~~~~ak~VIlaAGai~  258 (296)
T PF00732_consen  197 TYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDN------DGG--VQRRIVAAKEVILAAGAIG  258 (296)
T ss_dssp             HHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEET------TTS--EEEEEEEEEEEEE-SHHHH
T ss_pred             cccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeec------CCc--ceeeeccceeEEeccCCCC
Confidence            34445555679999999999999886  679999988641      110  0135678899999999654

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.97  E-value=4.2e-09  Score=97.28  Aligned_cols=71  Identities=28%  Similarity=0.387  Sum_probs=58.1

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC--------CCCCccccCCccchhhhccch----HHHHHHHhCCC
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV--------SPGGGAWLGGQLFSAMVVRKP----AHIFLDELGID  156 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~--------~~Gg~~~~~g~~~~~~~~~~~----~~~~l~~~G~~  156 (356)
                      .+||.||||||.+||+||-+++.. |.+|.++|--.        .+||+|.+.||++.+++.+..    .++....+|+.
T Consensus        18 ydyDLIviGgGSgGLacaKeAa~~-G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyGW~   96 (503)
T KOG4716|consen   18 YDYDLIVIGGGSGGLACAKEAADL-GAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYGWN   96 (503)
T ss_pred             CCccEEEEcCCcchhhHHHHHHhc-CCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhCCC
Confidence            479999999999999999999999 99999999521        247888899999999887763    45566678887


Q ss_pred             cccc
Q 018414          157 YDEQ  160 (356)
Q Consensus       157 ~~~~  160 (356)
                      .++.
T Consensus        97 ~~e~  100 (503)
T KOG4716|consen   97 VDEQ  100 (503)
T ss_pred             Cccc
Confidence            7653

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.96  E-value=8.1e-09  Score=104.41  Aligned_cols=114  Identities=18%  Similarity=0.288  Sum_probs=76.8

Q ss_pred             CCcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEe
Q 018414           88 YADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIK  167 (356)
Q Consensus        88 ~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~  167 (356)
                      ...|||+|||||++|++||+.|++. |++|+|+|.  .+||.....-.+           +  .-.+.+         ..
T Consensus       210 ~~~~dVvIIGgGpAGl~AA~~la~~-G~~v~li~~--~~GG~~~~~~~~-----------~--~~~~~~---------~~  264 (515)
T TIGR03140       210 LDPYDVLVVGGGPAGAAAAIYAARK-GLRTAMVAE--RIGGQVKDTVGI-----------E--NLISVP---------YT  264 (515)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEec--CCCCccccCcCc-----------c--cccccC---------CC
Confidence            3469999999999999999999999 999999985  355532210000           0  000110         01


Q ss_pred             chHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          168 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       168 ~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      ....+...+.+.+. +.|++++.+++|+++..+++.+ .+.+.              +...+.+|.+|+|||...
T Consensus       265 ~~~~l~~~l~~~l~-~~gv~i~~~~~V~~I~~~~~~~-~v~~~--------------~g~~i~~d~lIlAtGa~~  323 (515)
T TIGR03140       265 TGSQLAANLEEHIK-QYPIDLMENQRAKKIETEDGLI-VVTLE--------------SGEVLKAKSVIVATGARW  323 (515)
T ss_pred             CHHHHHHHHHHHHH-HhCCeEEcCCEEEEEEecCCeE-EEEEC--------------CCCEEEeCEEEECCCCCc
Confidence            23556666666665 5699999999999997765433 23332              135799999999999754

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.95  E-value=8.1e-09  Score=105.29  Aligned_cols=111  Identities=17%  Similarity=0.260  Sum_probs=72.5

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~  169 (356)
                      .|||+|||||+||++||+.|++. |++|+|+|+. ..||.+.....+..                .+     .+. ....
T Consensus         4 ~yDVvIIGgGpAGL~AA~~lar~-g~~V~liE~~-~~GG~~~~~~~i~~----------------~p-----g~~-~~~~   59 (555)
T TIGR03143         4 IYDLIIIGGGPAGLSAGIYAGRA-KLDTLIIEKD-DFGGQITITSEVVN----------------YP-----GIL-NTTG   59 (555)
T ss_pred             cCcEEEECCCHHHHHHHHHHHHC-CCCEEEEecC-CCCceEEecccccc----------------CC-----CCc-CCCH
Confidence            49999999999999999999999 9999999996 46654332111000                00     000 0122


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      ..+...+.+.+. +.|++++ +++|+.+..+++ ...+...               ...+.++.||+|||+..
T Consensus        60 ~~l~~~l~~~~~-~~gv~~~-~~~V~~i~~~~~-~~~V~~~---------------~g~~~a~~lVlATGa~p  114 (555)
T TIGR03143        60 PELMQEMRQQAQ-DFGVKFL-QAEVLDVDFDGD-IKTIKTA---------------RGDYKTLAVLIATGASP  114 (555)
T ss_pred             HHHHHHHHHHHH-HcCCEEe-ccEEEEEEecCC-EEEEEec---------------CCEEEEeEEEECCCCcc
Confidence            455555555554 5689986 557888776543 3334332               13588999999999865

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>TIGR02730 carot_isom carotene isomerase

Probab=98.95  E-value=1.5e-08  Score=101.99  Aligned_cols=56  Identities=16%  Similarity=0.165  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~  241 (356)
                      .+.+.|.+.+. +.|++|+++++|++|..+++++.+|.+.+              ..+++|+.||+|+|..
T Consensus       230 ~l~~~L~~~~~-~~G~~i~~~~~V~~I~~~~~~~~gv~~~~--------------g~~~~ad~vV~a~~~~  285 (493)
T TIGR02730       230 QIAESLVKGLE-KHGGQIRYRARVTKIILENGKAVGVKLAD--------------GEKIYAKRIVSNATRW  285 (493)
T ss_pred             HHHHHHHHHHH-HCCCEEEeCCeeeEEEecCCcEEEEEeCC--------------CCEEEcCEEEECCChH
Confidence            45566666665 67999999999999998888888888752              3578999999999964

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=98.94  E-value=1.5e-08  Score=99.55  Aligned_cols=126  Identities=19%  Similarity=0.300  Sum_probs=77.2

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCC-CeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCC--------------
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPN-IQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID--------------  156 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G-~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~--------------  156 (356)
                      +|+|||||++||++|+.|+++ | ++|+|+||.+.++..   +..    +.......+.|+++|+.              
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~-g~~~v~v~Er~~~~~~~---G~g----i~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~   73 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKH-SHLNVQLFEAAPAFGEV---GAG----VSFGANAVRAIVGLGLGEAYTQVADSTPAPW   73 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhc-CCCCEEEEecCCcCCCC---ccc----eeeCccHHHHHHHcCChhHHHHHhcCCCccC
Confidence            699999999999999999998 7 699999998765321   000    01111222233333321              


Q ss_pred             ----cc--c--cCCeE----------EEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeeccc
Q 018414          157 ----YD--E--QDNYV----------VIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH  218 (356)
Q Consensus       157 ----~~--~--~~~~~----------~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~  218 (356)
                          +.  .  ...+.          ...+...+.+.|++.+   .+..++++++|+++..+++.+. +...+       
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~---~~~~v~~~~~v~~i~~~~~~~~-v~~~~-------  142 (414)
T TIGR03219        74 QDIWFEWRNGSDASYLGATIAPGVGQSSVHRADFLDALLKHL---PEGIASFGKRATQIEEQAEEVQ-VLFTD-------  142 (414)
T ss_pred             cceeEEEEecCccceeeeeccccCCcccCCHHHHHHHHHHhC---CCceEEcCCEEEEEEecCCcEE-EEEcC-------
Confidence                00  0  00000          0123445666666554   2456889999999987766543 33321       


Q ss_pred             CCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          219 DTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       219 ~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                             ..++++|.||+|+|.++.
T Consensus       143 -------g~~~~ad~vVgADG~~S~  160 (414)
T TIGR03219       143 -------GTEYRCDLLIGADGIKSA  160 (414)
T ss_pred             -------CCEEEeeEEEECCCccHH
Confidence                   356899999999997764

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK10262 thioredoxin reductase; Provisional

Probab=98.94  E-value=1.2e-08  Score=96.84  Aligned_cols=115  Identities=11%  Similarity=0.155  Sum_probs=71.0

Q ss_pred             cCCcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEE
Q 018414           87 TYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVI  166 (356)
Q Consensus        87 ~~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~  166 (356)
                      +..++||+|||||++|++||+.|+++ |++|+++|+. ..||.+......                ++++.     ....
T Consensus         3 ~~~~~~vvIIGgGpaGl~aA~~l~~~-g~~~~~ie~~-~~gg~~~~~~~~----------------~~~~~-----~~~~   59 (321)
T PRK10262          3 TTKHSKLLILGSGPAGYTAAVYAARA-NLQPVLITGM-EKGGQLTTTTEV----------------ENWPG-----DPND   59 (321)
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHHC-CCCeEEEEee-cCCCceecCceE----------------CCCCC-----CCCC
Confidence            34579999999999999999999999 9999999965 455533211100                01110     0001


Q ss_pred             echHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          167 KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       167 ~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      .....+.+.+.+... +.+++++.+ .++.+...++.+. +...               ...+.+|.||+|||...
T Consensus        60 ~~~~~~~~~~~~~~~-~~~~~~~~~-~v~~v~~~~~~~~-v~~~---------------~~~~~~d~vilAtG~~~  117 (321)
T PRK10262         60 LTGPLLMERMHEHAT-KFETEIIFD-HINKVDLQNRPFR-LTGD---------------SGEYTCDALIIATGASA  117 (321)
T ss_pred             CCHHHHHHHHHHHHH-HCCCEEEee-EEEEEEecCCeEE-EEec---------------CCEEEECEEEECCCCCC
Confidence            122344455444443 456677666 5666666555332 2211               23589999999999764

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=98.93  E-value=2.7e-08  Score=91.96  Aligned_cols=151  Identities=26%  Similarity=0.342  Sum_probs=91.5

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCC--CCCc-cccCCccch----------------------------
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS--PGGG-AWLGGQLFS----------------------------  138 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~--~Gg~-~~~~g~~~~----------------------------  138 (356)
                      ++||||||+|.+||.+|.+|+.. |++|+|+|+...  +||. .|.-|.++-                            
T Consensus         5 ~~dvivvgaglaglvaa~elA~a-G~~V~ildQEgeqnlGGQAfWSfGGLF~vdSPEQRRlgirDsldLArqDW~gtA~F   83 (552)
T COG3573           5 TADVIVVGAGLAGLVAAAELADA-GKRVLILDQEGEQNLGGQAFWSFGGLFLVDSPEQRRLGIRDSLDLARQDWFGTAAF   83 (552)
T ss_pred             cccEEEECccHHHHHHHHHHHhc-CceEEEEcccccccccceeeeecccEEEecCHHHhhcccchhHHHHHHhhhccccc
Confidence            58999999999999999999999 999999998753  3433 343222110                            


Q ss_pred             -------------hhhc--cchHHHHHHHhCCCcccc------------------CCeEEE-ec----hHHHHHHHHHHH
Q 018414          139 -------------AMVV--RKPAHIFLDELGIDYDEQ------------------DNYVVI-KH----AALFTSTIMSKL  180 (356)
Q Consensus       139 -------------~~~~--~~~~~~~l~~~G~~~~~~------------------~~~~~~-~~----~~~~~~~l~~~~  180 (356)
                                   .++.  ..+...||...|+.|-..                  +.|.+. ..    -..|.+.+.+..
T Consensus        84 DRPEDhWPr~WAeAYl~FAAGEkR~WL~~~GmrwFPvVGWAERGG~~A~ghGNSVPRFHiTWGTGPgvl~pFvr~~re~~  163 (552)
T COG3573          84 DRPEDHWPRQWAEAYLDFAAGEKRSWLHRRGMRWFPVVGWAERGGSDAQGHGNSVPRFHITWGTGPGVLEPFVRRLREAQ  163 (552)
T ss_pred             CCccccchHHHHHHHHhhhccchhHHHHHcCCeeeeeccchhhCCcccCCCCCCCcceEEeecCCcchhhHHHHHHHHHH
Confidence                         0000  012235666666543211                  011111 11    134555554444


Q ss_pred             HcCCCcEEEcCeEEEEEEEeCCeEEEEEEc---ceeeecccCCCC-CCCCeEEEcCEEEEcCCCCC
Q 018414          181 LARPNVKLFNAVAAEDLIVKGGRVGGVVTN---WALVSMNHDTQS-CMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       181 ~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~---~~~~~~~~~~~~-~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      . ..-++|.+.++|..+...+++|+||.-.   ...+...+.... -....+++|..||+++|+.+
T Consensus       164 ~-~~~v~f~~RHrV~~l~~t~grvtGv~GdVLeps~v~RG~~SSR~~~GdFef~A~aviv~SGGIG  228 (552)
T COG3573         164 R-RGRVTFRFRHRVDGLTTTGGRVTGVRGDVLEPSDVERGQPSSREVVGDFEFSASAVIVASGGIG  228 (552)
T ss_pred             h-CCceEEEeeeeccceEeeCCeEeeecccccCCCccccCCCccceeecceEEeeeeEEEecCCcC
Confidence            3 6679999999999999999999988642   100111111100 00125789999999999987

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=98.93  E-value=2e-08  Score=100.41  Aligned_cols=39  Identities=33%  Similarity=0.496  Sum_probs=33.6

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcC-CCCeEEEEeccCCCC
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPG  127 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~-~G~~V~llEk~~~~G  127 (356)
                      ..+||||||||++|+++|+.|++. |+.+|+|+||.+.++
T Consensus         5 ~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a   44 (497)
T PRK13339          5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPA   44 (497)
T ss_pred             ccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcc
Confidence            358999999999999999999984 689999999944443

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=98.91  E-value=1.4e-08  Score=98.53  Aligned_cols=37  Identities=35%  Similarity=0.677  Sum_probs=34.2

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPG  127 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~G  127 (356)
                      ++||+|||||++|+++|++|+++ |.+|+++|+....+
T Consensus         4 ~~~vvVIGgGi~Gls~A~~La~~-G~~V~vie~~~~~~   40 (387)
T COG0665           4 KMDVVIIGGGIVGLSAAYYLAER-GADVTVLEAGEAGG   40 (387)
T ss_pred             cceEEEECCcHHHHHHHHHHHHc-CCEEEEEecCccCC
Confidence            58999999999999999999999 99999999987554

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=98.91  E-value=3.7e-08  Score=101.19  Aligned_cols=133  Identities=19%  Similarity=0.247  Sum_probs=78.8

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCC-CCCccccCCccchhhhccchHHHHHHHhCC------------
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS-PGGGAWLGGQLFSAMVVRKPAHIFLDELGI------------  155 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~-~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~------------  155 (356)
                      +.++|+|||||++|+++|+.|+++ |++|+|+||... ..+..+.++.    +.......+.|+++|+            
T Consensus        80 ~~~~VlIVGgGIaGLalAlaL~r~-Gi~V~V~Er~~~~~r~~G~~~~~----I~L~pngl~aLe~LGl~~~e~l~~~g~~  154 (668)
T PLN02927         80 KKSRVLVAGGGIGGLVFALAAKKK-GFDVLVFEKDLSAIRGEGKYRGP----IQIQSNALAALEAIDIDVAEQVMEAGCI  154 (668)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhc-CCeEEEEeccccccccccccCcc----cccCHHHHHHHHHcCcchHHHHHhhcCc
Confidence            458999999999999999999999 999999999752 1111110000    0111111112222111            


Q ss_pred             ------------------Cccc-----cC--CeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEc
Q 018414          156 ------------------DYDE-----QD--NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTN  210 (356)
Q Consensus       156 ------------------~~~~-----~~--~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~  210 (356)
                                        .++.     ..  .+....+...+.+.|.+.+.   ...++++++|+++..+++.+. +...
T Consensus       155 ~~~~i~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~alg---~~~i~~g~~V~~I~~~~d~Vt-V~~~  230 (668)
T PLN02927        155 TGDRINGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARAVG---EDVIRNESNVVDFEDSGDKVT-VVLE  230 (668)
T ss_pred             ccceeeeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhhCC---CCEEEcCCEEEEEEEeCCEEE-EEEC
Confidence                              0000     00  11123344556666654431   123678899999988777765 4443


Q ss_pred             ceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414          211 WALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF  244 (356)
Q Consensus       211 ~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~  244 (356)
                      +              ..++++|.||.|+|.++..
T Consensus       231 d--------------G~ti~aDlVVGADG~~S~v  250 (668)
T PLN02927        231 N--------------GQRYEGDLLVGADGIWSKV  250 (668)
T ss_pred             C--------------CCEEEcCEEEECCCCCcHH
Confidence            2              3568999999999988743

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.90  E-value=1.9e-08  Score=101.04  Aligned_cols=40  Identities=38%  Similarity=0.612  Sum_probs=37.4

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~  130 (356)
                      .+||||||||..||+||..|+++ |++|+|+||+..+||.+
T Consensus         3 ~~dvvVIGaG~~GL~aAa~LA~~-G~~V~VlE~~~~~GG~a   42 (487)
T COG1233           3 MYDVVVIGAGLNGLAAAALLARA-GLKVTVLEKNDRVGGRA   42 (487)
T ss_pred             CccEEEECCChhHHHHHHHHHhC-CCEEEEEEecCCCCcce
Confidence            48999999999999999999999 99999999999888754

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=98.90  E-value=1.9e-08  Score=101.00  Aligned_cols=41  Identities=32%  Similarity=0.568  Sum_probs=36.5

Q ss_pred             cccEEEECCCHHHHHHHHHhhcC---CCCeEEEEeccCCCCCcc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKN---PNIQIAIIEQSVSPGGGA  130 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~---~G~~V~llEk~~~~Gg~~  130 (356)
                      +.+++|||||++||+||+.|++.   +|.+|+|+|+...+||..
T Consensus        22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~   65 (576)
T PRK13977         22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSL   65 (576)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCc
Confidence            36899999999999999999985   378999999999988764

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=98.89  E-value=1.4e-07  Score=92.65  Aligned_cols=59  Identities=17%  Similarity=0.120  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          172 FTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       172 ~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      +.+.|.+.+. +.|++++.+++|+++..+++++..+...+            ++...+++|.||+|+|.+..
T Consensus       261 L~~aL~~~l~-~~Gv~I~~g~~V~~v~~~~~~V~~v~~~~------------g~~~~i~AD~VVLAtGrf~s  319 (422)
T PRK05329        261 LQNALRRAFE-RLGGRIMPGDEVLGAEFEGGRVTAVWTRN------------HGDIPLRARHFVLATGSFFS  319 (422)
T ss_pred             HHHHHHHHHH-hCCCEEEeCCEEEEEEEeCCEEEEEEeeC------------CceEEEECCEEEEeCCCccc
Confidence            3455555554 67999999999999998887776655321            12467999999999998753

>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.88  E-value=2.4e-08  Score=102.09  Aligned_cols=131  Identities=16%  Similarity=0.232  Sum_probs=90.1

Q ss_pred             HHHHHHhhcCCCCeEEEEeccCCCCCcc-ccCCcc--------c--------hhh---------------hcc--chHHH
Q 018414          103 LSCAYELSKNPNIQIAIIEQSVSPGGGA-WLGGQL--------F--------SAM---------------VVR--KPAHI  148 (356)
Q Consensus       103 l~aA~~La~~~G~~V~llEk~~~~Gg~~-~~~g~~--------~--------~~~---------------~~~--~~~~~  148 (356)
                      |+||+++++. |.+|+||||....++++ +.+|.+        .        ...               +.+  ...++
T Consensus         1 l~AAl~aa~~-G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~v~~l~~~a~~~i~   79 (570)
T PRK05675          1 MRAALQLAQG-GHKTAVVTKVFPTRSHTVSAQGGITCAIASADPNDDWRWHMYDTVKGSDYIGDQDAIEYMCSVGPEAVF   79 (570)
T ss_pred             ChhHHhHHhc-CCcEEEEEcCCCCCchHHHhhhhhhcccCCCCCCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence            4789999999 99999999997655543 222111        0        000               011  13578


Q ss_pred             HHHHhCCCccccCC--eE------------------EEe-----chHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEe-CC
Q 018414          149 FLDELGIDYDEQDN--YV------------------VIK-----HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GG  202 (356)
Q Consensus       149 ~l~~~G~~~~~~~~--~~------------------~~~-----~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~-~~  202 (356)
                      ||+++|++|+...+  +.                  ...     ....+...|++.+. +.|++++.++.+++|+.+ ++
T Consensus        80 ~L~~~Gv~F~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~~~tG~~i~~~L~~~~~-~~gi~i~~~~~~~~Li~~~~g  158 (570)
T PRK05675         80 ELEHMGLPFSRTETGRIYQRPFGGQSKDFGKGGQAARTCAAADRTGHALLHTLYQGNL-KNGTTFLNEWYAVDLVKNQDG  158 (570)
T ss_pred             HHHHcCCccccCCCCceeecccCccccccccCCccceEEecCCCCHHHHHHHHHHHHh-ccCCEEEECcEEEEEEEcCCC
Confidence            99999999976321  10                  111     23567788888776 679999999999999985 68


Q ss_pred             eEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414          203 RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF  244 (356)
Q Consensus       203 ~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~  244 (356)
                      +|.|+...+      ..   +++...+.||.||+||||++..
T Consensus       159 ~v~Gv~~~~------~~---~g~~~~i~AkaVVLATGG~~~~  191 (570)
T PRK05675        159 AVVGVIAIC------IE---TGETVYIKSKATVLATGGAGRI  191 (570)
T ss_pred             eEEEEEEEE------cC---CCcEEEEecCeEEECCCCcccc
Confidence            999998732      11   2245689999999999998854

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=98.86  E-value=3.5e-08  Score=106.84  Aligned_cols=125  Identities=25%  Similarity=0.292  Sum_probs=77.1

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEec
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKH  168 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~  168 (356)
                      .++||+|||||+||++||+.|++. |++|+|+|+...+||..+....                    .++       -..
T Consensus       162 ~~~dVvIIGaGPAGLaAA~~aar~-G~~V~liD~~~~~GG~~~~~~~--------------------~~~-------g~~  213 (985)
T TIGR01372       162 AHCDVLVVGAGPAGLAAALAAARA-GARVILVDEQPEAGGSLLSEAE--------------------TID-------GKP  213 (985)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCCCCCeeecccc--------------------ccC-------Ccc
Confidence            358999999999999999999999 9999999999887764432110                    000       012


Q ss_pred             hHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          169 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       169 ~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      ..++...+.+++.+..+++++.++.|..+.. ++.+..+.....................++++.||+|||+..
T Consensus       214 ~~~~~~~~~~~l~~~~~v~v~~~t~V~~i~~-~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~  286 (985)
T TIGR01372       214 AADWAAATVAELTAMPEVTLLPRTTAFGYYD-HNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHE  286 (985)
T ss_pred             HHHHHHHHHHHHhcCCCcEEEcCCEEEEEec-CCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCC
Confidence            2445555666666555799999999988743 233322211100000000000001123689999999999754

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK09897 hypothetical protein; Provisional

Probab=98.85  E-value=6e-08  Score=97.81  Aligned_cols=137  Identities=18%  Similarity=0.275  Sum_probs=81.9

Q ss_pred             ccEEEECCCHHHHHHHHHhhcC-CCCeEEEEeccCCCCCcc-ccCCccchhhhc----------cchHHHHHHH------
Q 018414           91 TDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGA-WLGGQLFSAMVV----------RKPAHIFLDE------  152 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~-~G~~V~llEk~~~~Gg~~-~~~g~~~~~~~~----------~~~~~~~l~~------  152 (356)
                      .+|+|||||++|+++|.+|.+. ..++|+|+|++..+|.+. |....-...++.          .....+|+..      
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~   81 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL   81 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence            4799999999999999999874 146899999988787443 433211111111          1123345433      


Q ss_pred             --hCCCcccc--CCeEEEechHHHH----HHHHHHHHcCCC--cEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCC
Q 018414          153 --LGIDYDEQ--DNYVVIKHAALFT----STIMSKLLARPN--VKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQS  222 (356)
Q Consensus       153 --~G~~~~~~--~~~~~~~~~~~~~----~~l~~~~~~~~g--v~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~  222 (356)
                        ++++....  ..|........|.    ..+.+.+. ..|  ++++.+++|+++..+++.+. +.+.+           
T Consensus        82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~-~~G~~V~v~~~~~V~~I~~~~~g~~-V~t~~-----------  148 (534)
T PRK09897         82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQAR-QQKFAVAVYESCQVTDLQITNAGVM-LATNQ-----------  148 (534)
T ss_pred             HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHH-HcCCeEEEEECCEEEEEEEeCCEEE-EEECC-----------
Confidence              34433221  1232222223333    33444443 344  78888989999988776543 33321           


Q ss_pred             CCCCeEEEcCEEEEcCCCCC
Q 018414          223 CMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       223 ~g~~~~i~Ak~VI~AtGg~~  242 (356)
                        +...+.+|.||+|+|+..
T Consensus       149 --gg~~i~aD~VVLAtGh~~  166 (534)
T PRK09897        149 --DLPSETFDLAVIATGHVW  166 (534)
T ss_pred             --CCeEEEcCEEEECCCCCC
Confidence              135789999999999854

>TIGR02734 crtI_fam phytoene desaturase

Probab=98.83  E-value=6.3e-08  Score=97.61  Aligned_cols=55  Identities=16%  Similarity=0.102  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGH  240 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg  240 (356)
                      .+.+.|.+.+. +.|++|++++.|++|..+++++++|.+.+              ..+++||.||+|++.
T Consensus       220 ~l~~al~~~~~-~~G~~i~~~~~V~~i~~~~~~~~~V~~~~--------------g~~~~ad~VI~a~~~  274 (502)
T TIGR02734       220 ALVAAMAKLAE-DLGGELRLNAEVIRIETEGGRATAVHLAD--------------GERLDADAVVSNADL  274 (502)
T ss_pred             HHHHHHHHHHH-HCCCEEEECCeEEEEEeeCCEEEEEEECC--------------CCEEECCEEEECCcH
Confidence            44566666665 67999999999999998888888887752              357899999999884

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=98.83  E-value=1.6e-08  Score=100.47  Aligned_cols=67  Identities=16%  Similarity=0.250  Sum_probs=48.0

Q ss_pred             eEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEe-CCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414          163 YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       163 ~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~  241 (356)
                      |.+......|.+.|.+.+. +.||+++.+ .|+++..+ ++.+..|.+.+              +.+++||+||+|||..
T Consensus       147 ~ayhlDR~~fd~~L~~~A~-~~Gv~~~~g-~V~~v~~~~~g~i~~v~~~~--------------g~~i~ad~~IDASG~~  210 (454)
T PF04820_consen  147 YAYHLDRAKFDQFLRRHAE-ERGVEVIEG-TVVDVELDEDGRITAVRLDD--------------GRTIEADFFIDASGRR  210 (454)
T ss_dssp             -EEEEEHHHHHHHHHHHHH-HTT-EEEET--EEEEEE-TTSEEEEEEETT--------------SEEEEESEEEE-SGGG
T ss_pred             eeEEEeHHHHHHHHHHHHh-cCCCEEEeC-EEEEEEEcCCCCEEEEEECC--------------CCEEEEeEEEECCCcc
Confidence            4455567889888888887 569999998 47777765 56788887753              4789999999999977


Q ss_pred             CCCC
Q 018414          242 GPFG  245 (356)
Q Consensus       242 ~~~~  245 (356)
                      +.+.
T Consensus       211 s~L~  214 (454)
T PF04820_consen  211 SLLA  214 (454)
T ss_dssp             -CCC
T ss_pred             chhh
Confidence            7654

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PRK07233 hypothetical protein; Provisional

Probab=98.82  E-value=1.1e-07  Score=93.71  Aligned_cols=38  Identities=37%  Similarity=0.647  Sum_probs=35.7

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~  130 (356)
                      +|+|||||++||+||+.|++. |++|+|+|+...+||.+
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~-G~~v~vlE~~~~~GG~~   38 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKR-GHEVTVFEADDQLGGLA   38 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHC-CCcEEEEEeCCCCCCce
Confidence            589999999999999999999 99999999999998754

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=98.81  E-value=8.5e-08  Score=81.48  Aligned_cols=131  Identities=23%  Similarity=0.335  Sum_probs=78.2

Q ss_pred             EEECCCHHHHHHHHHhhcC----CCCeEEEEeccCCCC-CccccCCccchhhh--------c--c---chHHHHHHHhCC
Q 018414           94 VVVGAGSAGLSCAYELSKN----PNIQIAIIEQSVSPG-GGAWLGGQLFSAMV--------V--R---KPAHIFLDELGI  155 (356)
Q Consensus        94 vIIGgG~aGl~aA~~La~~----~G~~V~llEk~~~~G-g~~~~~g~~~~~~~--------~--~---~~~~~~l~~~G~  155 (356)
                      +|||+|++|++++.+|.++    ...+|+|+|+... | |..|........++        .  .   ....+|+++.+.
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~-G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~   79 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF-GAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGA   79 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc-cccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCc
Confidence            5999999999999999876    2679999999654 6 55564432111111        1  1   235678877663


Q ss_pred             ---CccccCCeEEEechHHHHHHHHHHHHc--CCCcEEE-cCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEE
Q 018414          156 ---DYDEQDNYVVIKHAALFTSTIMSKLLA--RPNVKLF-NAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVM  229 (356)
Q Consensus       156 ---~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~gv~i~-~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i  229 (356)
                         .......|+....-.+|.+..++.+.+  ..++++. ...+|+++...++.. .+.+.              ++..+
T Consensus        80 ~~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~~-~v~~~--------------~g~~~  144 (156)
T PF13454_consen   80 DEAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDGY-RVVTA--------------DGQSI  144 (156)
T ss_pred             ccccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCcE-EEEEC--------------CCCEE
Confidence               111112232222224444444444432  2354443 244899998877664 33333              24678


Q ss_pred             EcCEEEEcCCC
Q 018414          230 EAKVVVSSCGH  240 (356)
Q Consensus       230 ~Ak~VI~AtGg  240 (356)
                      .+|.||+|+|+
T Consensus       145 ~~d~VvLa~Gh  155 (156)
T PF13454_consen  145 RADAVVLATGH  155 (156)
T ss_pred             EeCEEEECCCC
Confidence            99999999995

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.81  E-value=5.7e-08  Score=95.62  Aligned_cols=136  Identities=17%  Similarity=0.177  Sum_probs=85.0

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCC--------ccchhhhccchHHHHHHHhCCCccccC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGG--------QLFSAMVVRKPAHIFLDELGIDYDEQD  161 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g--------~~~~~~~~~~~~~~~l~~~G~~~~~~~  161 (356)
                      .-+|+|||||++||.+|..|.++ |++|+++||...+||- |.--        .++..+..+. ..+.+.--.++|... 
T Consensus         6 ~~~vaIIGAG~sGL~~ar~l~~~-g~~v~vfEr~~~iGGl-W~y~~~~~~~~ss~Y~~l~tn~-pKe~~~~~dfpf~~~-   81 (448)
T KOG1399|consen    6 SKDVAVIGAGPAGLAAARELLRE-GHEVVVFERTDDIGGL-WKYTENVEVVHSSVYKSLRTNL-PKEMMGYSDFPFPER-   81 (448)
T ss_pred             CCceEEECcchHHHHHHHHHHHC-CCCceEEEecCCccce-EeecCcccccccchhhhhhccC-ChhhhcCCCCCCccc-
Confidence            36999999999999999999999 9999999999988863 4211        1122111111 111111123344333 


Q ss_pred             CeEEE-echHHHHHHHHHHHHcCCCc--EEEcCeEEEEEEEeC-CeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEc
Q 018414          162 NYVVI-KHAALFTSTIMSKLLARPNV--KLFNAVAAEDLIVKG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSS  237 (356)
Q Consensus       162 ~~~~~-~~~~~~~~~l~~~~~~~~gv--~i~~~~~v~~i~~~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~A  237 (356)
                       ++.. .+..++.+.|...+. +.++  .|.++++|..+...+ |++.+.....       .+    ......+|.||+|
T Consensus        82 -~~~~~p~~~e~~~YL~~yA~-~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~-------~~----~~~~~ifd~VvVc  148 (448)
T KOG1399|consen   82 -DPRYFPSHREVLEYLRDYAK-HFDLLKMINFNTEVVRVDSIDKGKWRVTTKDN-------GT----QIEEEIFDAVVVC  148 (448)
T ss_pred             -CcccCCCHHHHHHHHHHHHH-hcChhhheEecccEEEEeeccCCceeEEEecC-------Cc----ceeEEEeeEEEEc
Confidence             2222 344567766655553 5554  688888888888776 5554443321       10    1256779999999


Q ss_pred             CCCCC
Q 018414          238 CGHDG  242 (356)
Q Consensus       238 tGg~~  242 (356)
                      +|++-
T Consensus       149 tGh~~  153 (448)
T KOG1399|consen  149 TGHYV  153 (448)
T ss_pred             ccCcC
Confidence            99883

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.79  E-value=9.8e-09  Score=90.21  Aligned_cols=116  Identities=25%  Similarity=0.327  Sum_probs=70.7

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchH-HHHHHHhCCCccccCCeEEEechH
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA-HIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~-~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      ||+|||||++|+.+|.+|++. +.+|+|+|+....   ++...+++......... ...+.                ...
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~-~~~v~ii~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~----------------~~~   60 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARP-GAKVLIIEKSPGT---PYNSGCIPSPLLVEIAPHRHEFL----------------PAR   60 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHT-TSEEEEESSSSHH---HHHHSHHHHHHHHHHHHHHHHHH----------------HHH
T ss_pred             CEEEEecHHHHHHHHHHHhcC-CCeEEEEeccccc---ccccccccccccccccccccccc----------------ccc
Confidence            799999999999999999988 9999999886421   11122222211111100 00000                000


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEE----EEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVG----GVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~----gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~  241 (356)
                      .+  .+.+.+. ..+++++.++++.++......+.    .+...       .    .++..++.+|+||+|||..
T Consensus        61 ~~--~~~~~~~-~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~-------~----~~~~~~~~~d~lviAtG~~  121 (201)
T PF07992_consen   61 LF--KLVDQLK-NRGVEIRLNAKVVSIDPESKRVVCPAVTIQVV-------E----TGDGREIKYDYLVIATGSR  121 (201)
T ss_dssp             HG--HHHHHHH-HHTHEEEHHHTEEEEEESTTEEEETCEEEEEE-------E----TTTEEEEEEEEEEEESTEE
T ss_pred             cc--ccccccc-cceEEEeeccccccccccccccccCcccceee-------c----cCCceEecCCeeeecCccc
Confidence            00  3444443 46899989999999988777541    11110       0    1135789999999999954

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>TIGR02462 pyranose_ox pyranose oxidase

Probab=98.79  E-value=7.5e-08  Score=97.05  Aligned_cols=42  Identities=21%  Similarity=0.349  Sum_probs=36.8

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGG  134 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g  134 (356)
                      |||+|||+|++|+.+|+.|++. |++|+|||++...| +.|.++
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~-g~~v~~~e~~~~~~-~~~~g~   42 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDA-GLKVAMVEIGAADS-FLKIGA   42 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHC-CCeEEEEeccCccC-CCcccc
Confidence            6999999999999999999999 99999999998776 344443

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.78  E-value=1e-08  Score=99.94  Aligned_cols=44  Identities=23%  Similarity=0.525  Sum_probs=38.6

Q ss_pred             ccCCcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414           86 ITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (356)
Q Consensus        86 ~~~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~  130 (356)
                      ....+|||+|||||..|.-||+-++-+ |+||.|+|++++..|++
T Consensus        63 ~~~~~fDVLIIGGGAtGaGcALDA~TR-GLktaLVE~~DF~SGTS  106 (680)
T KOG0042|consen   63 KSTHEFDVLIIGGGATGAGCALDAATR-GLKTALVEAGDFASGTS  106 (680)
T ss_pred             hcCCcccEEEECCCccCcceeehhhcc-cceeEEEecccccCCcc
Confidence            344569999999999999999999999 99999999998766554

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=98.77  E-value=8.4e-08  Score=92.24  Aligned_cols=70  Identities=21%  Similarity=0.178  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCCCCccc
Q 018414          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGV  249 (356)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~~~~~~  249 (356)
                      ..+...+.+.+. ..|++++++++|++++.+++.+.+|.+..              +.+|.+++||+|.|+.|.   .++
T Consensus       173 ~~vvkni~~~l~-~~G~ei~f~t~VeDi~~~~~~~~~v~~~~--------------g~~i~~~~vvlA~Grsg~---dw~  234 (486)
T COG2509         173 PKVVKNIREYLE-SLGGEIRFNTEVEDIEIEDNEVLGVKLTK--------------GEEIEADYVVLAPGRSGR---DWF  234 (486)
T ss_pred             HHHHHHHHHHHH-hcCcEEEeeeEEEEEEecCCceEEEEccC--------------CcEEecCEEEEccCcchH---HHH
Confidence            456677777776 78999999999999999998888888753              478999999999997763   555


Q ss_pred             hhhhcc-Cc
Q 018414          250 KRLKSI-GM  257 (356)
Q Consensus       250 ~~~~~~-g~  257 (356)
                      ..+... |.
T Consensus       235 ~~l~~K~Gv  243 (486)
T COG2509         235 EMLHKKLGV  243 (486)
T ss_pred             HHHHHhcCc
Confidence            554333 44

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=98.75  E-value=1.2e-07  Score=87.79  Aligned_cols=36  Identities=50%  Similarity=0.729  Sum_probs=33.3

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSP  126 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~  126 (356)
                      ..||+|||+|.-|+++|++|+++ |.++++||+-+.+
T Consensus         7 ~~~viiVGAGVfG~stAyeLaK~-g~killLeqf~~p   42 (399)
T KOG2820|consen    7 SRDVIIVGAGVFGLSTAYELAKR-GDKILLLEQFPLP   42 (399)
T ss_pred             ceeEEEEcccccchHHHHHHHhc-CCeEEEEeccCCC
Confidence            58999999999999999999999 9999999997643

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=98.74  E-value=8.7e-08  Score=95.56  Aligned_cols=136  Identities=23%  Similarity=0.373  Sum_probs=88.5

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCe-EEEEeccCCCCCccccCCccchhhhccc---------h---HHHHHHHhCCC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQ-IAIIEQSVSPGGGAWLGGQLFSAMVVRK---------P---AHIFLDELGID  156 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~-V~llEk~~~~Gg~~~~~g~~~~~~~~~~---------~---~~~~l~~~G~~  156 (356)
                      ..||+|||||.+|+.+|++|++. |.+ .+++|+...-.|++|....+......+.         .   ..+..++.|+.
T Consensus        39 ~A~vvViggG~~g~~~~yhlak~-g~k~avlle~~~ltsgttwhtagl~~~lr~~dv~~qlia~~~~~l~~~leeEtgl~  117 (856)
T KOG2844|consen   39 TADVVVIGGGSLGCSTAYHLAKR-GMKGAVLLERSRLTSGTTWHTAGLLWQLFPSDVELQLIAHTSRVLYRELEEETGLH  117 (856)
T ss_pred             cccEEEEcCCchhHHHHHHHHHc-cccceEEEeeeeeccccccccccceeeccCCchhHHHHHHHHHHHHHHHHHhcCCC
Confidence            37999999999999999999999 999 5566666555566665433221100000         0   01111222322


Q ss_pred             --ccccCC--------------------------------------eEE----------------EechHHHHHHHHHHH
Q 018414          157 --YDEQDN--------------------------------------YVV----------------IKHAALFTSTIMSKL  180 (356)
Q Consensus       157 --~~~~~~--------------------------------------~~~----------------~~~~~~~~~~l~~~~  180 (356)
                        |...+.                                      |++                ...+..++..|...+
T Consensus       118 tGwiq~G~~~lAs~~~R~de~kR~~S~g~a~g~e~~lLsPee~~~~~pLLn~d~v~g~Ly~P~DG~~DP~~lC~ala~~A  197 (856)
T KOG2844|consen  118 TGWIQNGGIFLASNRQRLDEYKRLMSRGKAHGVESELLSPEETQELFPLLNVDDVYGGLYSPGDGVMDPAGLCQALARAA  197 (856)
T ss_pred             cceecCCceEEecCHHHHHHHHHHHHhhhhccceeeecCHHHHHHhCcccchhHheeeeecCCCcccCHHHHHHHHHHHH
Confidence              111111                                      111                123456667777666


Q ss_pred             HcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          181 LARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       181 ~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      . +.|+.|++++.|++|....+++.+|.+.               -..|++.+||.|+|-++
T Consensus       198 ~-~~GA~viE~cpV~~i~~~~~~~~gVeT~---------------~G~iet~~~VNaaGvWA  243 (856)
T KOG2844|consen  198 S-ALGALVIENCPVTGLHVETDKFGGVETP---------------HGSIETECVVNAAGVWA  243 (856)
T ss_pred             H-hcCcEEEecCCcceEEeecCCccceecc---------------CcceecceEEechhHHH
Confidence            5 7899999999999999988888888874               25599999999999776

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=98.74  E-value=1.7e-07  Score=90.84  Aligned_cols=64  Identities=16%  Similarity=0.115  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      ..+.+.|.+.+.+..|++++++++|++|.+.++.-+.|.+.+      ..   +++..+++|++|++..||.+
T Consensus       181 G~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~------~~---~~~~~~v~a~FVfvGAGG~a  244 (488)
T PF06039_consen  181 GALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKD------LK---TGEKREVRAKFVFVGAGGGA  244 (488)
T ss_pred             HHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEe------cC---CCCeEEEECCEEEECCchHh
Confidence            567788888888777999999999999999765534444422      11   22467899999999999765

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=98.73  E-value=1.7e-07  Score=90.86  Aligned_cols=124  Identities=22%  Similarity=0.373  Sum_probs=74.6

Q ss_pred             cEEEECCCHHHHHHHHHhhc-CCCCeEEEEeccCCCCCc-cccCCccchhhhccchHHHHHHHh-CCCccc-------c-
Q 018414           92 DVVVVGAGSAGLSCAYELSK-NPNIQIAIIEQSVSPGGG-AWLGGQLFSAMVVRKPAHIFLDEL-GIDYDE-------Q-  160 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~-~~G~~V~llEk~~~~Gg~-~~~~g~~~~~~~~~~~~~~~l~~~-G~~~~~-------~-  160 (356)
                      ||+|||||+||+++|++|++ .+|++|+|+|+.+..++. .|.   .+..-. ......+++.+ +..|..       . 
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~---~~~~~~-~~~~~~~~~~~v~~~W~~~~v~~~~~~   76 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWS---FFDSDL-SDAQHAWLADLVQTDWPGYEVRFPKYR   76 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccce---eccccc-chhhhhhhhhhheEeCCCCEEECcchh
Confidence            89999999999999999997 359999999998765542 331   111000 00111122211 111110       0 


Q ss_pred             ---CCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEc
Q 018414          161 ---DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSS  237 (356)
Q Consensus       161 ---~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~A  237 (356)
                         ...+...+..+|.+.+.+++.  .+  ++++++|+++  +.+.   |.+.              ++.+++|+.||.|
T Consensus        77 ~~l~~~Y~~I~r~~f~~~l~~~l~--~~--i~~~~~V~~v--~~~~---v~l~--------------dg~~~~A~~VI~A  133 (370)
T TIGR01789        77 RKLKTAYRSMTSTRFHEGLLQAFP--EG--VILGRKAVGL--DADG---VDLA--------------PGTRINARSVIDC  133 (370)
T ss_pred             hhcCCCceEEEHHHHHHHHHHhhc--cc--EEecCEEEEE--eCCE---EEEC--------------CCCEEEeeEEEEC
Confidence               112234456777777766553  23  6668888877  3343   3333              2467999999999


Q ss_pred             CCCCC
Q 018414          238 CGHDG  242 (356)
Q Consensus       238 tGg~~  242 (356)
                      +|..+
T Consensus       134 ~G~~s  138 (370)
T TIGR01789       134 RGFKP  138 (370)
T ss_pred             CCCCC
Confidence            99765

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=98.72  E-value=4.5e-08  Score=98.92  Aligned_cols=134  Identities=17%  Similarity=0.191  Sum_probs=78.2

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCC--------ccchhhhccchHHHHHHHh-CCCccccCC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGG--------QLFSAMVVRKPAHIFLDEL-GIDYDEQDN  162 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g--------~~~~~~~~~~~~~~~l~~~-G~~~~~~~~  162 (356)
                      .|+|||||++||++|..|.+. |++++++||.+.+||. |.-.        .++..+..+..  .++..+ .+++.  ++
T Consensus         3 rVaVIGaG~sGL~a~k~l~e~-g~~~~~fE~~~~iGG~-W~~~~~~~~g~~~~y~sl~~n~s--k~~~~fsdfp~p--~~   76 (531)
T PF00743_consen    3 RVAVIGAGPSGLAAAKNLLEE-GLEVTCFEKSDDIGGL-WRYTENPEDGRSSVYDSLHTNTS--KEMMAFSDFPFP--ED   76 (531)
T ss_dssp             EEEEE--SHHHHHHHHHHHHT-T-EEEEEESSSSSSGG-GCHSTTCCCSEGGGSTT-B-SS---GGGSCCTTS-HC--CC
T ss_pred             EEEEECccHHHHHHHHHHHHC-CCCCeEEecCCCCCcc-CeeCCcCCCCccccccceEEeeC--chHhcCCCcCCC--CC
Confidence            699999999999999999999 9999999999998864 4311        11221111110  011001 12222  23


Q ss_pred             eEEEechHHHHHHHHHHHHcCCCc--EEEcCeEEEEEEEeCC----eEEEEEEcceeeecccCCCCCCCCeEEEcCEEEE
Q 018414          163 YVVIKHAALFTSTIMSKLLARPNV--KLFNAVAAEDLIVKGG----RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVS  236 (356)
Q Consensus       163 ~~~~~~~~~~~~~l~~~~~~~~gv--~i~~~~~v~~i~~~~~----~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~  236 (356)
                      ++.+.+..++.+.|...+. +.++  .|.++|+|+++.+.++    .-+.|.+..           ++...+-..|.||+
T Consensus        77 ~p~f~~~~~v~~Yl~~Ya~-~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~-----------~g~~~~~~fD~Vvv  144 (531)
T PF00743_consen   77 YPDFPSHSEVLEYLESYAE-HFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTEN-----------DGKEETEEFDAVVV  144 (531)
T ss_dssp             CSSSEBHHHHHHHHHHHHH-HTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETT-----------TTEEEEEEECEEEE
T ss_pred             CCCCCCHHHHHHHHHHHHh-hhCCcceEEEccEEeEeeeccccCCCceEEEEeec-----------CCeEEEEEeCeEEE
Confidence            3334456677776655554 4454  5899999999988642    122333321           11234456799999


Q ss_pred             cCCCCCC
Q 018414          237 SCGHDGP  243 (356)
Q Consensus       237 AtGg~~~  243 (356)
                      |+|.++.
T Consensus       145 atG~~~~  151 (531)
T PF00743_consen  145 ATGHFSK  151 (531)
T ss_dssp             EE-SSSC
T ss_pred             cCCCcCC
Confidence            9998873

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=98.72  E-value=3.6e-08  Score=94.82  Aligned_cols=135  Identities=24%  Similarity=0.338  Sum_probs=84.6

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC-CCCCccccC--Cccchhhhccc------hHHHHHHHhCCCcccc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV-SPGGGAWLG--GQLFSAMVVRK------PAHIFLDELGIDYDEQ  160 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~-~~Gg~~~~~--g~~~~~~~~~~------~~~~~l~~~G~~~~~~  160 (356)
                      .|||||||||.||+.||.++++- |.+.+++..+- .+|--.++.  |++-...+.+.      -....++..|+.|...
T Consensus        28 ~~dVvVIGgGHAG~EAAaAaaR~-Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrEVDALdGl~~rvcD~s~vq~k~L  106 (679)
T KOG2311|consen   28 TYDVVVIGGGHAGCEAAAAAARL-GARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMREVDALDGLCSRVCDQSGVQYKVL  106 (679)
T ss_pred             cccEEEECCCccchHHHHHHHhc-CCceEEeecccccccccccCcccCCcccceeeeeehhhcchHhhhhhhhhhhHHHh
Confidence            49999999999999999999999 99999998763 334322221  11111111111      1123444555555432


Q ss_pred             ---CCeEEEe-----chHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCC-----eEEEEEEcceeeecccCCCCCCCCe
Q 018414          161 ---DNYVVIK-----HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG-----RVGGVVTNWALVSMNHDTQSCMDPN  227 (356)
Q Consensus       161 ---~~~~~~~-----~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~-----~v~gv~~~~~~~~~~~~~~~~g~~~  227 (356)
                         .+..++.     ....|...+.+.+....+.+++.+ .|.+++..+.     .|.||...+              +.
T Consensus       107 Nrs~GPAVwg~RAQiDR~lYkk~MQkei~st~nL~ire~-~V~dliv~~~~~~~~~~~gV~l~d--------------gt  171 (679)
T KOG2311|consen  107 NRSKGPAVWGLRAQIDRKLYKKNMQKEISSTPNLEIREG-AVADLIVEDPDDGHCVVSGVVLVD--------------GT  171 (679)
T ss_pred             hccCCCcccChHHhhhHHHHHHHHHHHhccCCcchhhhh-hhhheeeccCCCCceEEEEEEEec--------------Cc
Confidence               1111222     223444455555555678899888 7888877543     377887753              47


Q ss_pred             EEEcCEEEEcCCC
Q 018414          228 VMEAKVVVSSCGH  240 (356)
Q Consensus       228 ~i~Ak~VI~AtGg  240 (356)
                      .+.|+.||+.||-
T Consensus       172 ~v~a~~VilTTGT  184 (679)
T KOG2311|consen  172 VVYAESVILTTGT  184 (679)
T ss_pred             EeccceEEEeecc
Confidence            8999999999994

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=98.71  E-value=3.5e-07  Score=90.44  Aligned_cols=40  Identities=25%  Similarity=0.292  Sum_probs=37.5

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~  130 (356)
                      +|||||||+|.+|+.+|..|++. |++|+++|++...||..
T Consensus         4 ~~DViViGtGL~e~ilAa~Ls~~-GkkVLhlD~n~~yGG~~   43 (443)
T PTZ00363          4 TYDVIVCGTGLKECILSGLLSVN-GKKVLHMDRNPYYGGES   43 (443)
T ss_pred             cceEEEECCChHHHHHHhhhhhC-CCEEEEecCCCCcCccc
Confidence            59999999999999999999999 99999999999888654

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=98.71  E-value=4.4e-07  Score=91.30  Aligned_cols=39  Identities=49%  Similarity=0.762  Sum_probs=36.3

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~  130 (356)
                      .||||||||++||+||..|+++ |++|+|+||+..+||.+
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~-G~~v~vlE~~~~~GG~~   40 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKR-GYRVTLLEQHAQPGGCA   40 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHC-CCeEEEEecCCCCCCcc
Confidence            5899999999999999999999 99999999999888654

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PRK02106 choline dehydrogenase; Validated

Probab=98.70  E-value=6.1e-08  Score=99.09  Aligned_cols=56  Identities=20%  Similarity=0.310  Sum_probs=42.4

Q ss_pred             HHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          177 MSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       177 ~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      +..+.+..|++|+.++.|++|+.+++++.||.+.+.      .    +....+.+|.||+|+|+..
T Consensus       207 l~~a~~~~nl~i~~~a~V~rI~~~~~~a~GV~~~~~------~----~~~~~~~ak~VILaaGai~  262 (560)
T PRK02106        207 LDPALKRPNLTIVTHALTDRILFEGKRAVGVEYERG------G----GRETARARREVILSAGAIN  262 (560)
T ss_pred             hccccCCCCcEEEcCCEEEEEEEeCCeEEEEEEEeC------C----cEEEEEeeeeEEEccCCCC
Confidence            333444678999999999999999888999987531      0    1234578999999999865

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.69  E-value=3.3e-07  Score=68.69  Aligned_cols=77  Identities=21%  Similarity=0.254  Sum_probs=60.1

Q ss_pred             EEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechHHH
Q 018414           93 VVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALF  172 (356)
Q Consensus        93 VvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~  172 (356)
                      |+|||||..|+.+|..|++. |.+|+|+++.+.+. ..                                     .....
T Consensus         2 vvViGgG~ig~E~A~~l~~~-g~~vtli~~~~~~~-~~-------------------------------------~~~~~   42 (80)
T PF00070_consen    2 VVVIGGGFIGIELAEALAEL-GKEVTLIERSDRLL-PG-------------------------------------FDPDA   42 (80)
T ss_dssp             EEEESSSHHHHHHHHHHHHT-TSEEEEEESSSSSS-TT-------------------------------------SSHHH
T ss_pred             EEEECcCHHHHHHHHHHHHh-CcEEEEEeccchhh-hh-------------------------------------cCHHH
Confidence            79999999999999999999 99999999997543 11                                     11333


Q ss_pred             HHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEc
Q 018414          173 TSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTN  210 (356)
Q Consensus       173 ~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~  210 (356)
                      ...+.+.+. +.|+++++++.++++..+++.+. |.+.
T Consensus        43 ~~~~~~~l~-~~gV~v~~~~~v~~i~~~~~~~~-V~~~   78 (80)
T PF00070_consen   43 AKILEEYLR-KRGVEVHTNTKVKEIEKDGDGVE-VTLE   78 (80)
T ss_dssp             HHHHHHHHH-HTTEEEEESEEEEEEEEETTSEE-EEEE
T ss_pred             HHHHHHHHH-HCCCEEEeCCEEEEEEEeCCEEE-EEEe
Confidence            444555555 56999999999999998876666 6664

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=98.68  E-value=6.3e-08  Score=92.17  Aligned_cols=38  Identities=34%  Similarity=0.665  Sum_probs=34.5

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG  129 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~  129 (356)
                      .+|+|||||++|+++|+.|.+. |++|+|+|+...+.+.
T Consensus         3 ~~VvIvGgGI~Gla~A~~l~r~-G~~v~VlE~~e~~R~~   40 (420)
T KOG2614|consen    3 PKVVIVGGGIVGLATALALHRK-GIDVVVLESREDPRGE   40 (420)
T ss_pred             CcEEEECCcHHHHHHHHHHHHc-CCeEEEEeeccccccC
Confidence            5899999999999999999999 9999999998766543

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=98.67  E-value=9.8e-08  Score=86.63  Aligned_cols=142  Identities=23%  Similarity=0.326  Sum_probs=90.4

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCC-----CCeEEEEeccCCCCCccccCCccchhhhccc----------hHHHHHH-Hh-
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNP-----NIQIAIIEQSVSPGGGAWLGGQLFSAMVVRK----------PAHIFLD-EL-  153 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~-----G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~----------~~~~~l~-~~-  153 (356)
                      ..|+|||||+.|+.+||.|+++|     -..++|+|+....|+.+-..+.++..++...          ...+.|. ++ 
T Consensus        11 k~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa~wc~~s~~~~La~lsfkLh~~Lsdeyd   90 (380)
T KOG2852|consen   11 KKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLAKWCQPSIIQPLATLSFKLHEELSDEYD   90 (380)
T ss_pred             eEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccchhhHhhhCCcccchhhHHHHHHHHHHHHhhc
Confidence            58999999999999999999983     2789999999877765533333322222221          0111121 11 


Q ss_pred             CC---CccccC--------------------Ce-----------------EEEechHHHHHHHHHHHHcCCCcEEEcCeE
Q 018414          154 GI---DYDEQD--------------------NY-----------------VVIKHAALFTSTIMSKLLARPNVKLFNAVA  193 (356)
Q Consensus       154 G~---~~~~~~--------------------~~-----------------~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~  193 (356)
                      |+   .|....                    +|                 ....|+..|.+.+++.+.+..||+++++ .
T Consensus        91 GvnnwgYRaltTws~ka~~en~~p~k~pegldWi~~e~v~~~ssiG~t~ttaqvhP~lFc~~i~sea~k~~~V~lv~G-k  169 (380)
T KOG2852|consen   91 GVNNWGYRALTTWSCKADWENTNPAKVPEGLDWIQRERVQKCSSIGSTNTTAQVHPYLFCHFILSEAEKRGGVKLVFG-K  169 (380)
T ss_pred             CcccccceeeeEEEEEeecccCCcccCCcchhhhhhHHhhhheeccCCCccceeCHHHHHHHHHHHHHhhcCeEEEEe-e
Confidence            11   111000                    01                 0134678899999999998888999999 7


Q ss_pred             EEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          194 AEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       194 v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      |.++..+.+++.++....     +.     +.......+.+|++.|.+.+
T Consensus       170 v~ev~dEk~r~n~v~~ae-----~~-----~ti~~~d~~~ivvsaGPWTs  209 (380)
T KOG2852|consen  170 VKEVSDEKHRINSVPKAE-----AE-----DTIIKADVHKIVVSAGPWTS  209 (380)
T ss_pred             eEEeecccccccccchhh-----hc-----CceEEeeeeEEEEecCCCch
Confidence            888875666766554321     00     12356677899999997764

>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E

Probab=98.67  E-value=2.7e-07  Score=94.38  Aligned_cols=90  Identities=21%  Similarity=0.336  Sum_probs=66.0

Q ss_pred             hHHHHHHHhCCCccccCC--eE------------------EEe-----chHHHHHHHHHHHHcCCCcEEEcCeEEEEEEE
Q 018414          145 PAHIFLDELGIDYDEQDN--YV------------------VIK-----HAALFTSTIMSKLLARPNVKLFNAVAAEDLIV  199 (356)
Q Consensus       145 ~~~~~l~~~G~~~~~~~~--~~------------------~~~-----~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~  199 (356)
                      ..++||+++|++|+...+  +.                  ...     ....+...|.+.+. +.|++|++++.+++|+.
T Consensus        69 ~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~~~~~~R~~~~~~~~G~~i~~~L~~~~~-~~gi~i~~~~~~~~Li~  147 (565)
T TIGR01816        69 EAVLELEHMGMPFSRTEDGKIYQRPFGGHTRDFGKGGAAERACAAADRTGHAILHTLYQQNL-KADTSFFNEYFALDLLM  147 (565)
T ss_pred             HHHHHHHhcCcccccCCCCceeecccccccccccCCcceeEEeecCCCchHHHHHHHHHHHH-hCCCEEEeccEEEEEEe
Confidence            356899999999965321  11                  001     13457788888776 67999999999999999


Q ss_pred             eCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414          200 KGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF  244 (356)
Q Consensus       200 ~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~  244 (356)
                      ++++|.|+...+      ..   ++....+.||.||+||||++..
T Consensus       148 ~~g~v~Ga~~~~------~~---~g~~~~i~AkaVILATGG~~~~  183 (565)
T TIGR01816       148 EDGECRGVIAYC------LE---TGEIHRFRAKAVVLATGGYGRI  183 (565)
T ss_pred             eCCEEEEEEEEE------cC---CCcEEEEEeCeEEECCCCcccc
Confidence            889999998632      11   1235689999999999998854

coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=98.63  E-value=3.8e-07  Score=88.10  Aligned_cols=42  Identities=48%  Similarity=0.722  Sum_probs=39.2

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccc
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW  131 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~  131 (356)
                      +..||||||+|.+||++|+.|.+. |++|+|+|.++.+||.+|
T Consensus         6 ~~~~viivGaGlaGL~AA~eL~ka-G~~v~ilEar~r~GGR~~   47 (450)
T COG1231           6 KTADVIIVGAGLAGLSAAYELKKA-GYQVQILEARDRVGGRSL   47 (450)
T ss_pred             CCCcEEEECCchHHHHHHHHHhhc-CcEEEEEeccCCcCceeE
Confidence            458999999999999999999999 999999999999998775

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=98.62  E-value=9.6e-08  Score=102.47  Aligned_cols=99  Identities=16%  Similarity=0.219  Sum_probs=68.2

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEec
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKH  168 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~  168 (356)
                      ...+|+|||+|||||+||+.|++. |++|+|+|+...+||-..                     +|++-        +..
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar~-G~~VtVfE~~~~~GG~l~---------------------yGIP~--------~rl  354 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAVE-GFPVTVFEAFHDLGGVLR---------------------YGIPE--------FRL  354 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHC-CCeEEEEeeCCCCCceEE---------------------ccCCC--------CcC
Confidence            357999999999999999999999 999999999987776321                     22221        112


Q ss_pred             hHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414          169 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       169 ~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~  241 (356)
                      ..++.+...+.+. +.|++|+.++.+-.         .+...+              .....+|.||+|||..
T Consensus       355 p~~vi~~~i~~l~-~~Gv~f~~n~~vG~---------dit~~~--------------l~~~~yDAV~LAtGA~  403 (944)
T PRK12779        355 PNQLIDDVVEKIK-LLGGRFVKNFVVGK---------TATLED--------------LKAAGFWKIFVGTGAG  403 (944)
T ss_pred             hHHHHHHHHHHHH-hhcCeEEEeEEecc---------EEeHHH--------------hccccCCEEEEeCCCC
Confidence            3455555556665 57999999875421         111111              1234689999999985

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=98.62  E-value=1.9e-07  Score=99.49  Aligned_cols=39  Identities=36%  Similarity=0.641  Sum_probs=35.7

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG  129 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~  129 (356)
                      ..+|+|||||+||+++|+.|+++ |++|+|+|+...+||.
T Consensus       539 gKkVaIIGgGPAGLsAA~~Lar~-G~~VtV~Ek~~~~GG~  577 (1019)
T PRK09853        539 RKKVAVIGAGPAGLAAAYFLARA-GHPVTVFEREENAGGV  577 (1019)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHc-CCeEEEEecccccCcc
Confidence            46899999999999999999999 9999999999877753

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=98.61  E-value=2.1e-07  Score=83.91  Aligned_cols=130  Identities=19%  Similarity=0.210  Sum_probs=75.4

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccc---cCCccchhhh--c--c-chHHHH---HHHhCCC--c
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW---LGGQLFSAMV--V--R-KPAHIF---LDELGID--Y  157 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~---~~g~~~~~~~--~--~-~~~~~~---l~~~G~~--~  157 (356)
                      .+|+|||+|++|++||+.|++. |.+|+|+||+..+||..-   ..++.++.-.  .  + ....++   +.+-|+-  +
T Consensus         2 ~siaIVGaGiAGl~aA~~L~~a-G~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W   80 (331)
T COG3380           2 PSIAIVGAGIAGLAAAYALREA-GREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVW   80 (331)
T ss_pred             CcEEEEccchHHHHHHHHHHhc-CcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeec
Confidence            3799999999999999999999 999999999988876431   1112121111  0  1 112222   3333331  1


Q ss_pred             -----ccc--------CCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCC
Q 018414          158 -----DEQ--------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCM  224 (356)
Q Consensus       158 -----~~~--------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g  224 (356)
                           ...        ..-++...  .-+..|.+.+  ....++.++++|+++...++. +.+.+.+             
T Consensus        81 ~~~~~~~~~~~~~~~~d~~pyvg~--pgmsalak~L--AtdL~V~~~~rVt~v~~~~~~-W~l~~~~-------------  142 (331)
T COG3380          81 TPAVWTFTGDGSPPRGDEDPYVGE--PGMSALAKFL--ATDLTVVLETRVTEVARTDND-WTLHTDD-------------  142 (331)
T ss_pred             cccccccccCCCCCCCCCCccccC--cchHHHHHHH--hccchhhhhhhhhhheecCCe-eEEEecC-------------
Confidence                 000        00111111  1123344433  346788999999999887554 3344432             


Q ss_pred             CCeEEEcCEEEEcCC
Q 018414          225 DPNVMEAKVVVSSCG  239 (356)
Q Consensus       225 ~~~~i~Ak~VI~AtG  239 (356)
                      ......+|.||+|-=
T Consensus       143 g~~~~~~d~vvla~P  157 (331)
T COG3380         143 GTRHTQFDDVVLAIP  157 (331)
T ss_pred             CCcccccceEEEecC
Confidence            135678899998754

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=98.61  E-value=1.8e-07  Score=98.84  Aligned_cols=124  Identities=17%  Similarity=0.204  Sum_probs=74.5

Q ss_pred             cEEEECCCHHHHHHHHHhhcC-CCCeEEEEeccCCC---CCccccCCccchhhhccch-HHHHHHHhCCCcc-----c--
Q 018414           92 DVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSP---GGGAWLGGQLFSAMVVRKP-AHIFLDELGIDYD-----E--  159 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~-~G~~V~llEk~~~~---Gg~~~~~g~~~~~~~~~~~-~~~~l~~~G~~~~-----~--  159 (356)
                      +|+|||||++|+++|+.|++. +|++|+|+||....   |.+..........+....+ ..+.+......++     .  
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~g   81 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHWDDIDVHFKG   81 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcCHHHHHHHHHhcccCCceEEEECC
Confidence            699999999999999999985 47999999998753   3222111111111111111 1111111111110     0  


Q ss_pred             -----cCCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEE
Q 018414          160 -----QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVV  234 (356)
Q Consensus       160 -----~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~V  234 (356)
                           .+..+...+...+.+.|++++. +.|++++++++++++..                           ..+++|.|
T Consensus        82 ~~~~~~g~~~~~i~R~~L~~~L~e~a~-~~GV~i~~g~~v~~i~~---------------------------~~~~~D~V  133 (765)
T PRK08255         82 RRIRSGGHGFAGIGRKRLLNILQARCE-ELGVKLVFETEVPDDQA---------------------------LAADADLV  133 (765)
T ss_pred             EEEEECCeeEecCCHHHHHHHHHHHHH-HcCCEEEeCCccCchhh---------------------------hhcCCCEE
Confidence                 0111223466888889888886 56999999987665410                           12468999


Q ss_pred             EEcCCCCCC
Q 018414          235 VSSCGHDGP  243 (356)
Q Consensus       235 I~AtGg~~~  243 (356)
                      |.|+|..+.
T Consensus       134 VgADG~~S~  142 (765)
T PRK08255        134 IASDGLNSR  142 (765)
T ss_pred             EEcCCCCHH
Confidence            999997764

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=98.60  E-value=1.4e-06  Score=84.94  Aligned_cols=59  Identities=12%  Similarity=0.053  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC-C
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD-G  242 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~-~  242 (356)
                      .+.+.|.+.+. +.|++++.+++|.++..+++++.++.+..            +....++||.||+|+|++ +
T Consensus       264 RL~~aL~~~~~-~~Gg~il~g~~V~~i~~~~~~v~~V~t~~------------g~~~~l~AD~vVLAaGaw~S  323 (419)
T TIGR03378       264 RLEEALKHRFE-QLGGVMLPGDRVLRAEFEGNRVTRIHTRN------------HRDIPLRADHFVLASGSFFS  323 (419)
T ss_pred             HHHHHHHHHHH-HCCCEEEECcEEEEEEeeCCeEEEEEecC------------CccceEECCEEEEccCCCcC
Confidence            45566666665 67999999999999999999888877642            112579999999999988 5

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>TIGR01810 betA choline dehydrogenase

Probab=98.59  E-value=1.9e-07  Score=94.91  Aligned_cols=57  Identities=19%  Similarity=0.252  Sum_probs=42.6

Q ss_pred             HHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          176 IMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       176 l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      ++..+.++.|++|+.++.|++|+.++++++||.+...      .    .....+.+|.||+|.|+..
T Consensus       199 ~l~~a~~r~nl~i~~~~~V~rI~~~~~ra~GV~~~~~------~----~~~~~~~ak~VIlaAGai~  255 (532)
T TIGR01810       199 YLHPAMKRPNLEVQTRAFVTKINFEGNRATGVEFKKG------G----RKEHTEANKEVILSAGAIN  255 (532)
T ss_pred             HhhhhccCCCeEEEeCCEEEEEEecCCeEEEEEEEeC------C----cEEEEEEeeeEEEccCCCC
Confidence            3444545678999999999999999889999987421      0    0123468999999999854

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=98.55  E-value=1.9e-07  Score=99.90  Aligned_cols=40  Identities=38%  Similarity=0.669  Sum_probs=36.5

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~  130 (356)
                      .++|+|||||+||++||+.|++. |++|+|+|+...+||..
T Consensus       537 ~kkVaIIGGGPAGLSAA~~LAr~-G~~VTV~Ek~~~lGG~l  576 (1012)
T TIGR03315       537 AHKVAVIGAGPAGLSAGYFLARA-GHPVTVFEKKEKPGGVV  576 (1012)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHC-CCeEEEEecccccCcee
Confidence            47999999999999999999999 99999999998877643

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK12831 putative oxidoreductase; Provisional

Probab=98.54  E-value=1.2e-07  Score=94.76  Aligned_cols=41  Identities=39%  Similarity=0.678  Sum_probs=36.8

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~  130 (356)
                      ...||+|||||++|+++|+.|++. |++|+|+|+...+||..
T Consensus       139 ~~~~V~IIG~GpAGl~aA~~l~~~-G~~V~v~e~~~~~GG~l  179 (464)
T PRK12831        139 KGKKVAVIGSGPAGLTCAGDLAKM-GYDVTIFEALHEPGGVL  179 (464)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhC-CCeEEEEecCCCCCCee
Confidence            457999999999999999999999 99999999988777643

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=98.53  E-value=5.4e-07  Score=82.86  Aligned_cols=142  Identities=23%  Similarity=0.284  Sum_probs=88.1

Q ss_pred             cccEEEECCCHHHHHHHHHhhc-CCCCeEEEEeccCCCCC-------------ccccCCccchhhhccch--HHHHHHHh
Q 018414           90 DTDVVVVGAGSAGLSCAYELSK-NPNIQIAIIEQSVSPGG-------------GAWLGGQLFSAMVVRKP--AHIFLDEL  153 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~-~~G~~V~llEk~~~~Gg-------------~~~~~g~~~~~~~~~~~--~~~~l~~~  153 (356)
                      +||.||||||+.|++.|++|.- +|+.+|.|+||....+-             -.+..+.+..+++.+..  ..+++++.
T Consensus        48 ~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNSgViHaGIYY~P~SLKAklCV~G~~LlY~yc~e~  127 (453)
T KOG2665|consen   48 RYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYKPGSLKAKLCVEGRELLYEYCDEK  127 (453)
T ss_pred             cccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecccccceeeeeeeeCCcccchhhhhccHHHHHHHhhhc
Confidence            5999999999999999999875 57999999999765431             11222333344555443  24566777


Q ss_pred             CCCccccCCeEE----------------------------------------------------EechHHHHHHHHHHHH
Q 018414          154 GIDYDEQDNYVV----------------------------------------------------IKHAALFTSTIMSKLL  181 (356)
Q Consensus       154 G~~~~~~~~~~~----------------------------------------------------~~~~~~~~~~l~~~~~  181 (356)
                      ++++...+...+                                                    +.....+...+-+.+.
T Consensus       128 ~IpyKk~GKLIVAt~~~EiprLd~L~~~g~qN~v~glrmieg~ei~~~EP~crgvkAl~sPhtGIvD~~~v~ls~~edF~  207 (453)
T KOG2665|consen  128 KIPYKKTGKLIVATESEEIPRLDALMHRGTQNGVPGLRMIEGSEIMEMEPYCRGVKALLSPHTGIVDWGSVTLSFGEDFD  207 (453)
T ss_pred             CCChhhcceEEEEeChhhcchHHHHHHhhhhcCCCCeeeeccchhhhcChhhhhhhhhcCCCcceeehHHHHHHHHHHHH
Confidence            777655433222                                                    1111334445555554


Q ss_pred             cCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          182 ARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       182 ~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                       ..|.+++++.++..+...+..-..    ..++.+|      +...+++.+.||-|+|-.+
T Consensus       208 -~~gg~i~~n~~l~g~~~n~~~~~~----Ypivv~n------gk~ee~r~~~~vtc~gl~s  257 (453)
T KOG2665|consen  208 -FMGGRIYTNFRLQGIAQNKEATFS----YPIVVLN------GKGEEKRTKNVVTCAGLQS  257 (453)
T ss_pred             -HhcccccccceeccchhccCCCCC----CceEEec------CccceeEEeEEEEeccccH
Confidence             668888888888888765431100    0001111      2357899999999999554

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=98.52  E-value=1.2e-07  Score=68.88  Aligned_cols=35  Identities=37%  Similarity=0.695  Sum_probs=32.0

Q ss_pred             EECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414           95 VVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (356)
Q Consensus        95 IIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~  130 (356)
                      |||||++||++|+.|+++ |.+|+|+|+.+.+||.+
T Consensus         1 IiGaG~sGl~aA~~L~~~-g~~v~v~E~~~~~GG~~   35 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKA-GYRVTVFEKNDRLGGRA   35 (68)
T ss_dssp             EES-SHHHHHHHHHHHHT-TSEEEEEESSSSSSGGG
T ss_pred             CEeeCHHHHHHHHHHHHC-CCcEEEEecCcccCcce
Confidence            899999999999999999 99999999999988754

...

>PLN02785 Protein HOTHEAD

Probab=98.51  E-value=6.1e-07  Score=91.87  Aligned_cols=33  Identities=36%  Similarity=0.560  Sum_probs=30.9

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .||+||||+|.+|+.+|.+|++  +.+|+|||++.
T Consensus        55 ~yD~IIVG~G~aG~~lA~~Ls~--~~~VLllE~G~   87 (587)
T PLN02785         55 AYDYIVVGGGTAGCPLAATLSQ--NFSVLLLERGG   87 (587)
T ss_pred             cCCEEEECcCHHHHHHHHHHhc--CCcEEEEecCC
Confidence            4999999999999999999998  48999999986

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=98.50  E-value=1.1e-06  Score=86.00  Aligned_cols=36  Identities=28%  Similarity=0.435  Sum_probs=32.6

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPG  127 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~G  127 (356)
                      +||+|||||.+|+.+|+.|+++ |++|+|+|+.+..+
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~-G~~V~LiE~rp~~~   36 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQA-GVPVILYEMRPEKL   36 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhC-CCcEEEEecccccc
Confidence            3899999999999999999999 99999999876543

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]

Probab=98.47  E-value=1.2e-06  Score=87.87  Aligned_cols=38  Identities=39%  Similarity=0.624  Sum_probs=35.1

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCC
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSP  126 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~  126 (356)
                      .+||.||||||.||+..|.+|++.|..+|+|||++..+
T Consensus        56 ~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~   93 (623)
T KOG1238|consen   56 SSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP   93 (623)
T ss_pred             cCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence            36999999999999999999999889999999998754

>PLN02612 phytoene desaturase

Probab=98.47  E-value=4.5e-06  Score=85.44  Aligned_cols=40  Identities=35%  Similarity=0.420  Sum_probs=36.3

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG  129 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~  129 (356)
                      ...+|+|||+|++|+++|++|+++ |++|+|+|+...+||.
T Consensus        92 ~~~~v~iiG~G~~Gl~~a~~l~~~-g~~~~~~e~~~~~gG~  131 (567)
T PLN02612         92 KPLKVVIAGAGLAGLSTAKYLADA-GHKPILLEARDVLGGK  131 (567)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhc-CCeEEEEecCCCCCCc
Confidence            357999999999999999999999 9999999998877764

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.46  E-value=5.1e-07  Score=84.02  Aligned_cols=110  Identities=24%  Similarity=0.393  Sum_probs=75.8

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEE--E
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVV--I  166 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~--~  166 (356)
                      ..|||+||||||+|.++|++++++ |++.-++-..  .||      +..+             ..+++     +|..  .
T Consensus       210 ~~yDVLvVGgGPAgaaAAiYaARK-GiRTGl~aer--fGG------Qvld-------------T~~IE-----NfIsv~~  262 (520)
T COG3634         210 DAYDVLVVGGGPAGAAAAIYAARK-GIRTGLVAER--FGG------QVLD-------------TMGIE-----NFISVPE  262 (520)
T ss_pred             CCceEEEEcCCcchhHHHHHHHhh-cchhhhhhhh--hCC------eecc-------------ccchh-----heecccc
Confidence            359999999999999999999999 9998776432  333      2222             11111     1110  1


Q ss_pred             echHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEe--CCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCC
Q 018414          167 KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK--GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGH  240 (356)
Q Consensus       167 ~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~--~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg  240 (356)
                      .....+...|.+... +..|+++...++++++..  ++...-|...+              +-.+++|.||++||+
T Consensus       263 teGpkl~~ale~Hv~-~Y~vDimn~qra~~l~~a~~~~~l~ev~l~n--------------GavLkaktvIlstGA  323 (520)
T COG3634         263 TEGPKLAAALEAHVK-QYDVDVMNLQRASKLEPAAVEGGLIEVELAN--------------GAVLKARTVILATGA  323 (520)
T ss_pred             ccchHHHHHHHHHHh-hcCchhhhhhhhhcceecCCCCccEEEEecC--------------CceeccceEEEecCc
Confidence            134566677777765 678999988888888873  34555666653              467999999999995

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.46  E-value=1.1e-06  Score=87.07  Aligned_cols=111  Identities=9%  Similarity=0.174  Sum_probs=67.1

Q ss_pred             cEEEECCCHHHHHHHHHhhcC-CCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           92 DVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~-~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      +|||||||++|+++|..|++. ++.+|+|||+.+..+   |....                   +++.....   .....
T Consensus         2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~---~~~~~-------------------~~~~~~~~---~~~~~   56 (444)
T PRK09564          2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVS---FGACG-------------------LPYFVGGF---FDDPN   56 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcce---eecCC-------------------CceEeccc---cCCHH
Confidence            599999999999999999885 246999999987543   11000                   00000000   00112


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEE--cCEEEEcCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVME--AKVVVSSCGHDG  242 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~--Ak~VI~AtGg~~  242 (356)
                      ++.....+.+. +.|++++.+++|+.+..++..+.   +.+      ..     ...+++  +|++|+|||+..
T Consensus        57 ~~~~~~~~~~~-~~gv~~~~~~~V~~id~~~~~v~---~~~------~~-----~~~~~~~~yd~lviAtG~~~  115 (444)
T PRK09564         57 TMIARTPEEFI-KSGIDVKTEHEVVKVDAKNKTIT---VKN------LK-----TGSIFNDTYDKLMIATGARP  115 (444)
T ss_pred             HhhcCCHHHHH-HCCCeEEecCEEEEEECCCCEEE---EEE------CC-----CCCEEEecCCEEEECCCCCC
Confidence            22222233333 56999999999999987665433   211      00     123444  999999999764

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=98.45  E-value=5.4e-07  Score=86.31  Aligned_cols=136  Identities=19%  Similarity=0.196  Sum_probs=72.5

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhh----------hc--c----chHHHHHHHh
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAM----------VV--R----KPAHIFLDEL  153 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~----------~~--~----~~~~~~l~~~  153 (356)
                      .||+|+||.||++|+.|+.|.+.+..+++.+||.+..   .|..|.+....          +.  +    .....+|.+.
T Consensus         2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f---~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~   78 (341)
T PF13434_consen    2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSF---SWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEH   78 (341)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS-----TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHT
T ss_pred             ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCC---CcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHc
Confidence            3899999999999999999998635999999988643   36655443211          10  0    1234555554


Q ss_pred             CCCccc--cCCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCC---eEEEEEEcceeeecccCCCCCCCCeE
Q 018414          154 GIDYDE--QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG---RVGGVVTNWALVSMNHDTQSCMDPNV  228 (356)
Q Consensus       154 G~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~---~v~gv~~~~~~~~~~~~~~~~g~~~~  228 (356)
                      |--+.-  .+.+  .....+|.+. ++.+.++..-.+.++++|++|...++   ....|.+.+          .+|+..+
T Consensus        79 ~rl~~f~~~~~~--~p~R~ef~dY-l~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~----------~~g~~~~  145 (341)
T PF13434_consen   79 GRLYEFYNRGYF--FPSRREFNDY-LRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRD----------SDGDGET  145 (341)
T ss_dssp             T-HHHHHHH--S--S-BHHHHHHH-HHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEE----------TTS-EEE
T ss_pred             CChhhhhhcCCC--CCCHHHHHHH-HHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEee----------cCCCeeE
Confidence            422111  0111  1122444443 34455555655888999999988643   244455421          1234688


Q ss_pred             EEcCEEEEcCCCC
Q 018414          229 MEAKVVVSSCGHD  241 (356)
Q Consensus       229 i~Ak~VI~AtGg~  241 (356)
                      +.|+.||+|+|..
T Consensus       146 ~~ar~vVla~G~~  158 (341)
T PF13434_consen  146 YRARNVVLATGGQ  158 (341)
T ss_dssp             EEESEEEE----E
T ss_pred             EEeCeEEECcCCC
Confidence            9999999999944

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=98.44  E-value=2.7e-06  Score=78.82  Aligned_cols=59  Identities=17%  Similarity=0.147  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          172 FTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       172 ~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      +.+.|..++. ..|.-++.+-+|.+....+++|..+.+.+      +      ....++|+..|+|+|++=+
T Consensus       260 l~~~L~~~f~-~~Gg~~m~Gd~V~~a~~~~~~v~~i~trn------~------~diP~~a~~~VLAsGsffs  318 (421)
T COG3075         260 LHNQLQRQFE-QLGGLWMPGDEVKKATCKGGRVTEIYTRN------H------ADIPLRADFYVLASGSFFS  318 (421)
T ss_pred             HHHHHHHHHH-HcCceEecCCceeeeeeeCCeEEEEEecc------c------ccCCCChhHeeeecccccc
Confidence            3356666665 67889999999999999999999888752      1      2367999999999997643

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=98.44  E-value=4e-07  Score=90.76  Aligned_cols=98  Identities=21%  Similarity=0.310  Sum_probs=65.8

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEec
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKH  168 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~  168 (356)
                      ...+|+|||||++|+++|+.|++. |++|+|+|+...+||....                     +++.     +   ..
T Consensus       139 ~~~~VvIIGgGpaGl~aA~~l~~~-g~~V~lie~~~~~gG~l~~---------------------gip~-----~---~~  188 (457)
T PRK11749        139 TGKKVAVIGAGPAGLTAAHRLARK-GYDVTIFEARDKAGGLLRY---------------------GIPE-----F---RL  188 (457)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEccCCCCCcEeec---------------------cCCC-----c---cC
Confidence            357999999999999999999999 9999999999877652211                     1110     0   01


Q ss_pred             hHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414          169 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       169 ~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~  241 (356)
                      ..++...+.+.+. +.|++++.++.+...         +...               ...+.+|.||+|||..
T Consensus       189 ~~~~~~~~~~~l~-~~gv~~~~~~~v~~~---------v~~~---------------~~~~~~d~vvlAtGa~  236 (457)
T PRK11749        189 PKDIVDREVERLL-KLGVEIRTNTEVGRD---------ITLD---------------ELRAGYDAVFIGTGAG  236 (457)
T ss_pred             CHHHHHHHHHHHH-HcCCEEEeCCEECCc---------cCHH---------------HHHhhCCEEEEccCCC
Confidence            2344444455554 568999988765210         1111               1226789999999975

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=98.43  E-value=3.1e-07  Score=91.33  Aligned_cols=40  Identities=43%  Similarity=0.737  Sum_probs=36.2

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG  129 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~  129 (356)
                      ..++|+|||+|++|+++|+.|++. |++|+|+|+...+||.
T Consensus       132 ~~~~V~IIG~G~aGl~aA~~l~~~-G~~V~vie~~~~~GG~  171 (449)
T TIGR01316       132 THKKVAVIGAGPAGLACASELAKA-GHSVTVFEALHKPGGV  171 (449)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCCCcE
Confidence            357999999999999999999999 9999999998777653

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=98.43  E-value=1.6e-06  Score=86.05  Aligned_cols=114  Identities=14%  Similarity=0.163  Sum_probs=68.3

Q ss_pred             cEEEECCCHHHHHHHHHhhcC-CCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           92 DVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~-~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      +|||||||++|+.+|..|.+. ++.+|+|+|+.+..+   +....++. .         +.  +.          .....
T Consensus         3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~---~~~~~lp~-~---------~~--~~----------~~~~~   57 (438)
T PRK13512          3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS---FANCALPY-Y---------IG--EV----------VEDRK   57 (438)
T ss_pred             eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc---cccCCcch-h---------hc--Cc----------cCCHH
Confidence            699999999999999999873 368999999987543   11100000 0         00  00          00000


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      .......+.+.++.|++++.+++|++|..++..+.. ...        .   .++..++.+|++|+|||+..
T Consensus        58 ~~~~~~~~~~~~~~~i~v~~~~~V~~Id~~~~~v~~-~~~--------~---~~~~~~~~yd~lviAtGs~~  117 (438)
T PRK13512         58 YALAYTPEKFYDRKQITVKTYHEVIAINDERQTVTV-LNR--------K---TNEQFEESYDKLILSPGASA  117 (438)
T ss_pred             HcccCCHHHHHHhCCCEEEeCCEEEEEECCCCEEEE-EEC--------C---CCcEEeeecCEEEECCCCCC
Confidence            111101122333569999999999999877654332 111        0   01234578999999999765

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=98.42  E-value=3.5e-07  Score=98.97  Aligned_cols=73  Identities=23%  Similarity=0.284  Sum_probs=54.1

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~  169 (356)
                      ..+|+|||||+|||++|+.|++. |++|+|+|+...+||-..                     +|++..        ...
T Consensus       430 ~~kVaIIG~GPAGLsaA~~La~~-G~~VtV~E~~~~~GG~l~---------------------~gip~~--------rl~  479 (1006)
T PRK12775        430 LGKVAICGSGPAGLAAAADLVKY-GVDVTVYEALHVVGGVLQ---------------------YGIPSF--------RLP  479 (1006)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCCcceee---------------------ccCCcc--------CCC
Confidence            47999999999999999999999 999999999987765221                     122211        123


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCeE
Q 018414          170 ALFTSTIMSKLLARPNVKLFNAVA  193 (356)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~  193 (356)
                      .++.....+.+. +.|+++++++.
T Consensus       480 ~e~~~~~~~~l~-~~Gv~~~~~~~  502 (1006)
T PRK12775        480 RDIIDREVQRLV-DIGVKIETNKV  502 (1006)
T ss_pred             HHHHHHHHHHHH-HCCCEEEeCCc
Confidence            455556666665 57999999864

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=98.39  E-value=5.2e-07  Score=95.39  Aligned_cols=40  Identities=35%  Similarity=0.537  Sum_probs=35.9

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG  129 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~  129 (356)
                      ...+|+|||||+||+++|+.|++. |++|+|+|+...+||.
T Consensus       430 ~~~~V~IIGaGpAGl~aA~~l~~~-G~~V~v~e~~~~~GG~  469 (752)
T PRK12778        430 NGKKVAVIGSGPAGLSFAGDLAKR-GYDVTVFEALHEIGGV  469 (752)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHC-CCeEEEEecCCCCCCe
Confidence            357999999999999999999999 9999999998777653

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=98.39  E-value=6.1e-07  Score=89.79  Aligned_cols=39  Identities=33%  Similarity=0.607  Sum_probs=35.7

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCC
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG  128 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg  128 (356)
                      ..++|+|||+|++|+++|..|++. |++|+|+|+...+||
T Consensus       142 ~~~~VvIIGaGpAGl~aA~~l~~~-G~~V~vie~~~~~GG  180 (471)
T PRK12810        142 TGKKVAVVGSGPAGLAAADQLARA-GHKVTVFERADRIGG  180 (471)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhC-CCcEEEEecCCCCCc
Confidence            347999999999999999999999 999999999987765

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=98.37  E-value=3e-06  Score=83.28  Aligned_cols=37  Identities=35%  Similarity=0.682  Sum_probs=34.1

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCC--CeEEEEeccCCCCCc
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPN--IQIAIIEQSVSPGGG  129 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G--~~V~llEk~~~~Gg~  129 (356)
                      .++|||||++||++|++|.++ +  ..|+|+|+.+.+||-
T Consensus         2 ~i~IiG~GiaGLsaAy~L~k~-~p~~~i~lfE~~~r~GG~   40 (444)
T COG1232           2 KIAIIGGGIAGLSAAYRLQKA-GPDVEVTLFEADDRVGGL   40 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHh-CCCCcEEEEecCCCCCce
Confidence            489999999999999999997 6  999999999888864

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=98.36  E-value=7.1e-06  Score=78.17  Aligned_cols=139  Identities=20%  Similarity=0.324  Sum_probs=81.6

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCC---CCeEEEEeccCCCCCccccCCccchhhhcc--chHHHHHHHhCC---------
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNP---NIQIAIIEQSVSPGGGAWLGGQLFSAMVVR--KPAHIFLDELGI---------  155 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~---G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~--~~~~~~l~~~G~---------  155 (356)
                      .|||+|||||++|++.|..|..+|   .+||+|+|....+.-+.|.....+...+..  ...+.+++.+|.         
T Consensus        36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~s~~s~~~fk~~~awd~i~~~R~  115 (481)
T KOG3855|consen   36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISPASISLFKSIGAWDHIFHDRY  115 (481)
T ss_pred             cCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccccccCccccceeecCCcchHHHHHhcCHHHHhhhhcc
Confidence            599999999999999999998754   679999998854332334332222222111  122333333222         


Q ss_pred             -C----------------cccc--C-CeEEEechHHHHHHHH--HHHHcCCCcEEEcCeEEEEEEEe-------CCeEEE
Q 018414          156 -D----------------YDEQ--D-NYVVIKHAALFTSTIM--SKLLARPNVKLFNAVAAEDLIVK-------GGRVGG  206 (356)
Q Consensus       156 -~----------------~~~~--~-~~~~~~~~~~~~~~l~--~~~~~~~gv~i~~~~~v~~i~~~-------~~~v~g  206 (356)
                       +                |+..  . +...+.+...+...|+  +...+..++++++..++.++..-       ++-+.-
T Consensus       116 ~~~~~~~v~Ds~s~a~I~~~~d~~~~d~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~n~~~~~  195 (481)
T KOG3855|consen  116 QKFSRMLVWDSCSAALILFDHDNVGIDMAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKNDNGMWFH  195 (481)
T ss_pred             ccccceeeecccchhhhhhccccccccceeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccccccCCCCCcceEE
Confidence             0                1110  0 1112223344555566  33344678999999988887652       233443


Q ss_pred             EEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          207 VVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       207 v~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      +...              ++..+..|.+|.|+|..+
T Consensus       196 i~l~--------------dg~~~~~~LLigAdg~Ns  217 (481)
T KOG3855|consen  196 ITLT--------------DGINFATDLLIGADGFNS  217 (481)
T ss_pred             EEec--------------cCceeeeceeeccccccc
Confidence            4443              246799999999999554

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=98.35  E-value=9.3e-06  Score=75.61  Aligned_cols=37  Identities=27%  Similarity=0.582  Sum_probs=32.3

Q ss_pred             CcccEEEECCCHHHHHHHHHhhc---CCCCeEEEEeccCC
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSK---NPNIQIAIIEQSVS  125 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~---~~G~~V~llEk~~~  125 (356)
                      .++||+|||||..|++.|+.|.+   ..|++|+|+|+...
T Consensus        85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddt  124 (509)
T KOG2853|consen   85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDT  124 (509)
T ss_pred             cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCc
Confidence            36899999999999999999976   23799999999864

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.35  E-value=2.2e-06  Score=83.82  Aligned_cols=107  Identities=15%  Similarity=0.127  Sum_probs=65.7

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCC--eEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEec
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKH  168 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~--~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~  168 (356)
                      .+|||||||+||+.||..|++. +.  +|+|+++.....   +....+..         .++.  +....   ..  ...
T Consensus         4 ~~vvIIGgG~AG~~aA~~Lr~~-~~~~~I~li~~e~~~~---y~r~~l~~---------~~~~--~~~~~---~~--~~~   63 (396)
T PRK09754          4 KTIIIVGGGQAAAMAAASLRQQ-GFTGELHLFSDERHLP---YERPPLSK---------SMLL--EDSPQ---LQ--QVL   63 (396)
T ss_pred             CcEEEECChHHHHHHHHHHHhh-CCCCCEEEeCCCCCCC---CCCCCCCH---------HHHC--CCCcc---cc--ccC
Confidence            5899999999999999999986 54  799999875432   10000000         0110  00000   00  000


Q ss_pred             hHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          169 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       169 ~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      ..       +.+ .+.+++++.++.|+.+..++..+   .+.              +..++.+|++|+|||+..
T Consensus        64 ~~-------~~~-~~~~i~~~~g~~V~~id~~~~~v---~~~--------------~g~~~~yd~LViATGs~~  112 (396)
T PRK09754         64 PA-------NWW-QENNVHLHSGVTIKTLGRDTREL---VLT--------------NGESWHWDQLFIATGAAA  112 (396)
T ss_pred             CH-------HHH-HHCCCEEEcCCEEEEEECCCCEE---EEC--------------CCCEEEcCEEEEccCCCC
Confidence            11       112 24699999999998887665432   222              135799999999999765

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=98.34  E-value=1.1e-06  Score=87.95  Aligned_cols=99  Identities=20%  Similarity=0.251  Sum_probs=66.6

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEec
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKH  168 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~  168 (356)
                      ...+|+|||+|++|+++|..|++. |++|+|+|+.+.+||-..                     +|++..        ..
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~-G~~V~i~e~~~~~gG~l~---------------------~gip~~--------~~  189 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARA-GVQVVVFDRHPEIGGLLT---------------------FGIPSF--------KL  189 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCCceee---------------------ecCccc--------cC
Confidence            347899999999999999999999 999999999987765221                     122110        11


Q ss_pred             hHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          169 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       169 ~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      ..++.....+.+. +.|++++.++.+..-         +...               .....+|.||+|||...
T Consensus       190 ~~~~~~~~~~~~~-~~Gv~~~~~~~v~~~---------~~~~---------------~~~~~~D~vilAtGa~~  238 (467)
T TIGR01318       190 DKAVLSRRREIFT-AMGIEFHLNCEVGRD---------ISLD---------------DLLEDYDAVFLGVGTYR  238 (467)
T ss_pred             CHHHHHHHHHHHH-HCCCEEECCCEeCCc---------cCHH---------------HHHhcCCEEEEEeCCCC
Confidence            1334444445554 679999999865210         0111               12246899999999875

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=98.34  E-value=1e-06  Score=85.25  Aligned_cols=82  Identities=24%  Similarity=0.457  Sum_probs=59.3

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~  169 (356)
                      .-+++|||||++|+.||+.|++. |++|.|+||.+.+||..                    .+++-.|...+      -+
T Consensus       124 ~~svLVIGGGvAGitAAl~La~~-G~~v~LVEKepsiGGrm--------------------ak~~k~FP~~d------cs  176 (622)
T COG1148         124 SKSVLVIGGGVAGITAALELADM-GFKVYLVEKEPSIGGRM--------------------AKLNKTFPTND------CS  176 (622)
T ss_pred             ccceEEEcCcHHHHHHHHHHHHc-CCeEEEEecCCcccccH--------------------HhhhccCCCcc------cc
Confidence            45899999999999999999999 99999999999988732                    22222222221      11


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCeEEEEEE
Q 018414          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLI  198 (356)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~  198 (356)
                      --....++....+++++++++.++|+++.
T Consensus       177 ~C~LaP~m~~v~~hp~i~l~TyaeV~ev~  205 (622)
T COG1148         177 ICILAPKMVEVSNHPNIELITYAEVEEVS  205 (622)
T ss_pred             hhhccchhhhhccCCceeeeeeeeeeeec
Confidence            11223345555668899999999999864

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=98.33  E-value=5.5e-06  Score=80.45  Aligned_cols=108  Identities=19%  Similarity=0.271  Sum_probs=67.1

Q ss_pred             ccEEEECCCHHHHHHHHHhhcC-CCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414           91 TDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~-~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~  169 (356)
                      .+|||||||+||+.+|..|.+. +..+|+||++....-   ++... +...         +. .+            ...
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~---y~~~~-l~~~---------~~-~~------------~~~   56 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDE---YNKPD-LSHV---------FS-QG------------QRA   56 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCC---cCcCc-CcHH---------Hh-CC------------CCH
Confidence            4899999999999999999873 367899999875311   11100 0000         00 00            011


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      .++.....+.+.++.|++++.+++|+.+..++..+   .+.               ...+.+|+||+|||...
T Consensus        57 ~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v---~~~---------------~~~~~yd~LVlATG~~~  111 (377)
T PRK04965         57 DDLTRQSAGEFAEQFNLRLFPHTWVTDIDAEAQVV---KSQ---------------GNQWQYDKLVLATGASA  111 (377)
T ss_pred             HHhhcCCHHHHHHhCCCEEECCCEEEEEECCCCEE---EEC---------------CeEEeCCEEEECCCCCC
Confidence            22221112233335699999999999987665432   222               35799999999999764

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=98.31  E-value=2.7e-06  Score=86.50  Aligned_cols=59  Identities=24%  Similarity=0.369  Sum_probs=44.3

Q ss_pred             HHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          176 IMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       176 l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      ++..+.+..|+++++++.|+.|+.++++.+++.+...      +.+ . ....+.++.||+|+|+..
T Consensus       208 ~l~~a~~~~nl~v~t~a~v~ri~~~~~r~~gv~~~~~------~~~-~-~~~~~a~~~viL~AGai~  266 (542)
T COG2303         208 YLKPALKRPNLTLLTGARVRRILLEGDRAVGVEVEIG------DGG-T-IETAVAAREVVLAAGAIN  266 (542)
T ss_pred             cchhHhcCCceEEecCCEEEEEEEECCeeEEEEEEeC------CCC-c-eEEEecCceEEEeccccC
Confidence            3444566789999999999999999999999987521      100 0 135577889999999876

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.28  E-value=1.3e-06  Score=90.82  Aligned_cols=38  Identities=37%  Similarity=0.768  Sum_probs=35.4

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG  128 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg  128 (356)
                      ..+|+|||+|++||++|+.|++. |++|+|+|+...+||
T Consensus       327 ~~~VaIIGaGpAGLsaA~~L~~~-G~~V~V~E~~~~~GG  364 (654)
T PRK12769        327 DKRVAIIGAGPAGLACADVLARN-GVAVTVYDRHPEIGG  364 (654)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCCCc
Confidence            57999999999999999999999 999999999887775

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=98.28  E-value=2.1e-06  Score=82.65  Aligned_cols=38  Identities=32%  Similarity=0.557  Sum_probs=34.9

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG  128 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg  128 (356)
                      ..+|+|||+|++|+.+|..|++. |++|+++|+.+.+|+
T Consensus        18 ~~~VvIIG~G~aGl~aA~~l~~~-g~~v~lie~~~~~gg   55 (352)
T PRK12770         18 GKKVAIIGAGPAGLAAAGYLACL-GYEVHVYDKLPEPGG   55 (352)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHC-CCcEEEEeCCCCCCc
Confidence            36899999999999999999999 999999999887765

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=98.27  E-value=2.7e-06  Score=81.74  Aligned_cols=56  Identities=18%  Similarity=0.251  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~  241 (356)
                      .+...+.+.+. +.|.+|++...|.+|..+++++.||...+              +.++++|.||--++-+
T Consensus       265 avs~aia~~~~-~~GaeI~tka~Vq~Illd~gka~GV~L~d--------------G~ev~sk~VvSNAt~~  320 (561)
T KOG4254|consen  265 AVSFAIAEGAK-RAGAEIFTKATVQSILLDSGKAVGVRLAD--------------GTEVRSKIVVSNATPW  320 (561)
T ss_pred             HHHHHHHHHHH-hccceeeehhhhhheeccCCeEEEEEecC--------------CcEEEeeeeecCCchH
Confidence            34455555554 78999999999999999999999999974              4789999998777744

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=98.24  E-value=6.4e-06  Score=80.35  Aligned_cols=105  Identities=18%  Similarity=0.244  Sum_probs=62.1

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhc-----------cc-hHHHHHHHhC-CCc
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVV-----------RK-PAHIFLDELG-IDY  157 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~-----------~~-~~~~~l~~~G-~~~  157 (356)
                      .||+|||||++|+.+|+.|++. |++|+|+|+.+........... +..+..           .. ...+.++.+| +.+
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~-Gl~V~LiE~rp~~~s~a~~~~~-~~ervca~Slgs~~ll~a~Gll~~em~~lgsl~~   80 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKR-GVPVELYEMRPVKKTPAHHTDG-FAELVCSNSFRSDSLTNAVGLLKEEMRRLGSLIM   80 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhC-CCcEEEEEccCccCcccccCcc-ccccccchhhhhhhHHhcCCchHHHHHHhcchhe
Confidence            5999999999999999999999 9999999987654321110000 000000           00 0112333333 212


Q ss_pred             ccc------CCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEE
Q 018414          158 DEQ------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLI  198 (356)
Q Consensus       158 ~~~------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~  198 (356)
                      ...      ...........+.+.|.+.+.+.++++++ ..+|+++.
T Consensus        81 ~aad~~~vPA~gaLvvdR~~~~~~L~~~L~~~pnI~l~-~~eV~~l~  126 (436)
T PRK05335         81 EAADAHRVPAGGALAVDREGFSEYVTEALENHPLITVI-REEVTEIP  126 (436)
T ss_pred             ecccccCCCCccceecCHHHHHHHHHHHHHcCCCcEEE-ccchhccc
Confidence            111      11123344555888888888877899988 44666663

>PLN02852 ferredoxin-NADP+ reductase

Probab=98.24  E-value=3.7e-06  Score=84.08  Aligned_cols=37  Identities=41%  Similarity=0.580  Sum_probs=34.0

Q ss_pred             ccEEEECCCHHHHHHHHHhhc--CCCCeEEEEeccCCCCC
Q 018414           91 TDVVVVGAGSAGLSCAYELSK--NPNIQIAIIEQSVSPGG  128 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~--~~G~~V~llEk~~~~Gg  128 (356)
                      .+|+|||+||||++||+.|++  . |++|+|+|+.+.+||
T Consensus        27 ~~VaIVGaGPAGl~AA~~L~~~~~-g~~Vtv~E~~p~pgG   65 (491)
T PLN02852         27 LHVCVVGSGPAGFYTADKLLKAHD-GARVDIIERLPTPFG   65 (491)
T ss_pred             CcEEEECccHHHHHHHHHHHhhCC-CCeEEEEecCCCCcc
Confidence            589999999999999999986  6 999999999988775

>PLN02268 probable polyamine oxidase

Probab=98.23  E-value=2.1e-06  Score=84.88  Aligned_cols=40  Identities=28%  Similarity=0.536  Sum_probs=37.4

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcccc
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWL  132 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~  132 (356)
                      +|+|||||++||+||+.|.+. |++|+|+|+.+.+||..+.
T Consensus         2 ~VvVIGaGisGL~aA~~L~~~-g~~v~vlEa~~r~GGri~t   41 (435)
T PLN02268          2 SVIVIGGGIAGIAAARALHDA-SFKVTLLESRDRIGGRVHT   41 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCCCCCceeee
Confidence            799999999999999999998 9999999999999987653

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=98.23  E-value=1.8e-06  Score=89.77  Aligned_cols=38  Identities=34%  Similarity=0.678  Sum_probs=35.4

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG  128 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg  128 (356)
                      ..+|+|||+|++|+++|+.|++. |++|+|+|+...+||
T Consensus       193 ~k~VaIIGaGpAGl~aA~~La~~-G~~Vtv~e~~~~~GG  230 (652)
T PRK12814        193 GKKVAIIGAGPAGLTAAYYLLRK-GHDVTIFDANEQAGG  230 (652)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCCCc
Confidence            47999999999999999999999 999999999987765

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=98.21  E-value=2.6e-06  Score=85.55  Aligned_cols=38  Identities=34%  Similarity=0.590  Sum_probs=35.1

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG  128 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg  128 (356)
                      ..+|+|||+|++|+++|..|++. |++|+|+|+...+||
T Consensus       143 ~~~V~IIGaG~aGl~aA~~L~~~-g~~V~v~e~~~~~gG  180 (485)
T TIGR01317       143 GKKVAVVGSGPAGLAAADQLNRA-GHTVTVFEREDRCGG  180 (485)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHc-CCeEEEEecCCCCCc
Confidence            46999999999999999999999 999999999987765

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=98.21  E-value=1.9e-05  Score=78.00  Aligned_cols=116  Identities=18%  Similarity=0.205  Sum_probs=68.7

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~  169 (356)
                      +.+|||||||.+|+.+|..|.+. +.+|+|||+.+..-         +..+         +-....     +.    ...
T Consensus        10 ~~~vVIvGgG~aGl~~a~~L~~~-~~~ItlI~~~~~~~---------~~~~---------l~~~~~-----g~----~~~   61 (424)
T PTZ00318         10 KPNVVVLGTGWAGAYFVRNLDPK-KYNITVISPRNHML---------FTPL---------LPQTTT-----GT----LEF   61 (424)
T ss_pred             CCeEEEECCCHHHHHHHHHhCcC-CCeEEEEcCCCCcc---------hhhh---------HHHhcc-----cC----CCh
Confidence            47899999999999999999776 79999999876321         1000         000000     00    011


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      ..+...+...+ +..+++++.+ +|++|..++..+......       .......+..++.+|++|+|||...
T Consensus        62 ~~~~~~~~~~~-~~~~~~~i~~-~V~~Id~~~~~v~~~~~~-------~~~~~~~~g~~i~yD~LViAtGs~~  125 (424)
T PTZ00318         62 RSICEPVRPAL-AKLPNRYLRA-VVYDVDFEEKRVKCGVVS-------KSNNANVNTFSVPYDKLVVAHGARP  125 (424)
T ss_pred             HHhHHHHHHHh-ccCCeEEEEE-EEEEEEcCCCEEEEeccc-------ccccccCCceEecCCEEEECCCccc
Confidence            22222333333 3567888765 899998777654321100       0000001246799999999999864

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=98.20  E-value=3.4e-06  Score=89.26  Aligned_cols=38  Identities=24%  Similarity=0.350  Sum_probs=34.1

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG  128 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg  128 (356)
                      ...|+|||+||||+++|+.|++. |++|+|+|+....|+
T Consensus       383 gKKVaVVGaGPAGLsAA~~La~~-Gh~Vtv~E~~~i~gl  420 (1028)
T PRK06567        383 NYNILVTGLGPAGFSLSYYLLRS-GHNVTAIDGLKITLL  420 (1028)
T ss_pred             CCeEEEECcCHHHHHHHHHHHhC-CCeEEEEcccccccc
Confidence            46899999999999999999999 999999999765544

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.19  E-value=2.7e-05  Score=77.99  Aligned_cols=101  Identities=22%  Similarity=0.270  Sum_probs=72.0

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.|+|||||.+|+.+|..|++. |.+|+|+|+.+.+...                                      ...
T Consensus       181 ~~vvIIGgG~~G~E~A~~l~~~-g~~Vtli~~~~~il~~--------------------------------------~~~  221 (472)
T PRK05976        181 KSLVIVGGGVIGLEWASMLADF-GVEVTVVEAADRILPT--------------------------------------EDA  221 (472)
T ss_pred             CEEEEECCCHHHHHHHHHHHHc-CCeEEEEEecCccCCc--------------------------------------CCH
Confidence            4899999999999999999999 9999999988642100                                      012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEe-CCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      .+...+.+.+. +.|++++.+++++++..+ ++++..+...+            ++..++.+|.||+|+|....
T Consensus       222 ~~~~~l~~~l~-~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~------------g~~~~i~~D~vi~a~G~~p~  282 (472)
T PRK05976        222 ELSKEVARLLK-KLGVRVVTGAKVLGLTLKKDGGVLIVAEHN------------GEEKTLEADKVLVSVGRRPN  282 (472)
T ss_pred             HHHHHHHHHHH-hcCCEEEeCcEEEEEEEecCCCEEEEEEeC------------CceEEEEeCEEEEeeCCccC
Confidence            33344455554 679999999999999752 34443333221            12357999999999996653

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.18  E-value=1.8e-06  Score=86.48  Aligned_cols=40  Identities=35%  Similarity=0.559  Sum_probs=37.6

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~  130 (356)
                      ..+|||||||++||+||.+|.+. |.+|+|+|..+.+||..
T Consensus        15 ~~~VIVIGAGiaGLsAArqL~~~-G~~V~VLEARdRvGGRI   54 (501)
T KOG0029|consen   15 KKKVIVIGAGLAGLSAARQLQDF-GFDVLVLEARDRVGGRI   54 (501)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHc-CCceEEEeccCCcCcee
Confidence            57999999999999999999999 99999999999999764

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=98.18  E-value=2.7e-05  Score=75.66  Aligned_cols=98  Identities=17%  Similarity=0.261  Sum_probs=70.7

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      .+|+|||+|..|+.+|..|++. |.+|+++++.+.+....                                     ...
T Consensus       142 ~~vvViGgG~~g~e~A~~L~~~-g~~Vtlv~~~~~~l~~~-------------------------------------~~~  183 (377)
T PRK04965        142 QRVLVVGGGLIGTELAMDLCRA-GKAVTLVDNAASLLASL-------------------------------------MPP  183 (377)
T ss_pred             CeEEEECCCHHHHHHHHHHHhc-CCeEEEEecCCcccchh-------------------------------------CCH
Confidence            4799999999999999999999 99999999875421100                                     012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      .....+.+.+. +.|+++++++.++++..+++.+ .+...              +..++.+|.||+|+|...
T Consensus       184 ~~~~~l~~~l~-~~gV~i~~~~~v~~i~~~~~~~-~v~~~--------------~g~~i~~D~vI~a~G~~p  239 (377)
T PRK04965        184 EVSSRLQHRLT-EMGVHLLLKSQLQGLEKTDSGI-RATLD--------------SGRSIEVDAVIAAAGLRP  239 (377)
T ss_pred             HHHHHHHHHHH-hCCCEEEECCeEEEEEccCCEE-EEEEc--------------CCcEEECCEEEECcCCCc
Confidence            22334444554 6799999999999998665443 23332              236799999999999554

>PRK07208 hypothetical protein; Provisional

Probab=98.18  E-value=1.9e-06  Score=86.30  Aligned_cols=40  Identities=40%  Similarity=0.688  Sum_probs=37.3

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~  130 (356)
                      ..||+|||||++||++|+.|+++ |++|+|+|+...+||.+
T Consensus         4 ~~~vvIiGaGisGL~aA~~L~~~-g~~v~v~E~~~~~GG~~   43 (479)
T PRK07208          4 KKSVVIIGAGPAGLTAAYELLKR-GYPVTVLEADPVVGGIS   43 (479)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCCCcee
Confidence            47999999999999999999999 99999999999998754

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.16  E-value=3.6e-05  Score=76.80  Aligned_cols=100  Identities=15%  Similarity=0.213  Sum_probs=72.6

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      .+|+|||+|.+|+.+|..|++. |.+|+++|+.+.+...                                      ...
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtli~~~~~~l~~--------------------------------------~~~  211 (461)
T TIGR01350       171 ESLVIIGGGVIGIEFASIFASL-GSKVTVIEMLDRILPG--------------------------------------EDA  211 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCcEEEEEcCCCCCCC--------------------------------------CCH
Confidence            4899999999999999999999 9999999988642100                                      012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      .+...+.+.+. +.|++++.+++++++..+++.+. +...+            ++..++.+|.||+|+|....
T Consensus       212 ~~~~~~~~~l~-~~gi~i~~~~~v~~i~~~~~~v~-v~~~~------------g~~~~i~~D~vi~a~G~~p~  270 (461)
T TIGR01350       212 EVSKVVAKALK-KKGVKILTNTKVTAVEKNDDQVV-YENKG------------GETETLTGEKVLVAVGRKPN  270 (461)
T ss_pred             HHHHHHHHHHH-HcCCEEEeCCEEEEEEEeCCEEE-EEEeC------------CcEEEEEeCEEEEecCCccc
Confidence            23334455554 56999999999999987766554 32221            11257999999999996653

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.16  E-value=2.5e-05  Score=76.39  Aligned_cols=97  Identities=22%  Similarity=0.365  Sum_probs=69.4

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -+|+|||+|..|+.+|..|++. |.+|+|+|+.+.+....                                     ...
T Consensus       145 ~~vvViGgG~ig~E~A~~l~~~-g~~Vtlv~~~~~~l~~~-------------------------------------~~~  186 (396)
T PRK09754        145 RSVVIVGAGTIGLELAASATQR-RCKVTVIELAATVMGRN-------------------------------------APP  186 (396)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCcchhhh-------------------------------------cCH
Confidence            4799999999999999999999 99999999876432100                                     012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      .+.+.+.+.+. +.|++++++++++++.. ++.+ .+.+.              +..++.+|.||+|+|...
T Consensus       187 ~~~~~l~~~l~-~~GV~i~~~~~V~~i~~-~~~~-~v~l~--------------~g~~i~aD~Vv~a~G~~p  241 (396)
T PRK09754        187 PVQRYLLQRHQ-QAGVRILLNNAIEHVVD-GEKV-ELTLQ--------------SGETLQADVVIYGIGISA  241 (396)
T ss_pred             HHHHHHHHHHH-HCCCEEEeCCeeEEEEc-CCEE-EEEEC--------------CCCEEECCEEEECCCCCh
Confidence            23334455554 67999999999999865 3333 23332              135799999999999553

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=98.14  E-value=2.7e-06  Score=82.39  Aligned_cols=39  Identities=31%  Similarity=0.511  Sum_probs=36.5

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~  130 (356)
                      +||+|||||++|+++|+.|++. |.+|+|+|+...+||.+
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~-G~~V~viEk~~~iGG~~   40 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQL-NKRVLVVEKRNHIGGNC   40 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhC-CCeEEEEecCCCCCCce
Confidence            7999999999999999999998 99999999998888765

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=98.13  E-value=3e-06  Score=78.36  Aligned_cols=40  Identities=30%  Similarity=0.439  Sum_probs=38.5

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccc
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW  131 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~  131 (356)
                      +|++|||+|.+|+.+|..|++. |.+|+||||++.+||+|+
T Consensus         2 fd~lIVGaGlsG~V~A~~a~~~-gk~VLIvekR~HIGGNaY   41 (374)
T COG0562           2 FDYLIVGAGLSGAVIAEVAAQL-GKRVLIVEKRNHIGGNAY   41 (374)
T ss_pred             CcEEEECCchhHHHHHHHHHHc-CCEEEEEeccccCCCccc
Confidence            7999999999999999999999 999999999999999985

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.12  E-value=3.9e-05  Score=76.06  Aligned_cols=97  Identities=12%  Similarity=0.187  Sum_probs=69.7

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.|+|||+|.+|+.+|..|++. |.+|+++|+.+.+...                                      ...
T Consensus       158 ~~vvIIGgG~~g~e~A~~l~~~-g~~Vtli~~~~~~l~~--------------------------------------~~~  198 (438)
T PRK07251        158 ERLGIIGGGNIGLEFAGLYNKL-GSKVTVLDAASTILPR--------------------------------------EEP  198 (438)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCccCCC--------------------------------------CCH
Confidence            4799999999999999999998 9999999997643110                                      002


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      ++...+.+.+. +.|++++++++++++..+++.+. +..               +..++.+|.||+|+|....
T Consensus       199 ~~~~~~~~~l~-~~GI~i~~~~~V~~i~~~~~~v~-v~~---------------~g~~i~~D~viva~G~~p~  254 (438)
T PRK07251        199 SVAALAKQYME-EDGITFLLNAHTTEVKNDGDQVL-VVT---------------EDETYRFDALLYATGRKPN  254 (438)
T ss_pred             HHHHHHHHHHH-HcCCEEEcCCEEEEEEecCCEEE-EEE---------------CCeEEEcCEEEEeeCCCCC
Confidence            22233334443 67999999999999976555432 221               1357999999999996654

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.12  E-value=4.8e-06  Score=86.47  Aligned_cols=38  Identities=37%  Similarity=0.722  Sum_probs=35.4

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG  128 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg  128 (356)
                      ..+|+|||+|++|+++|+.|++. |++|+|+|+...+||
T Consensus       310 ~kkVaIIG~GpaGl~aA~~L~~~-G~~Vtv~e~~~~~GG  347 (639)
T PRK12809        310 SEKVAVIGAGPAGLGCADILARA-GVQVDVFDRHPEIGG  347 (639)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHc-CCcEEEEeCCCCCCC
Confidence            57899999999999999999999 999999999987765

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.11  E-value=5.5e-05  Score=75.52  Aligned_cols=101  Identities=18%  Similarity=0.197  Sum_probs=71.9

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.++|||+|..|+.+|..|++. |.+|+++|+.+.+...                                      ...
T Consensus       173 ~~vvVvGgG~~g~E~A~~l~~~-g~~Vtli~~~~~~l~~--------------------------------------~~~  213 (462)
T PRK06416        173 KSLVVIGGGYIGVEFASAYASL-GAEVTIVEALPRILPG--------------------------------------EDK  213 (462)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCCcCCc--------------------------------------CCH
Confidence            4799999999999999999999 9999999987643100                                      012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      ++...+.+.+. +.|++++++++++++..+++.+. +...+           .++..++.+|.||+|+|....
T Consensus       214 ~~~~~l~~~l~-~~gV~i~~~~~V~~i~~~~~~v~-v~~~~-----------gg~~~~i~~D~vi~a~G~~p~  273 (462)
T PRK06416        214 EISKLAERALK-KRGIKIKTGAKAKKVEQTDDGVT-VTLED-----------GGKEETLEADYVLVAVGRRPN  273 (462)
T ss_pred             HHHHHHHHHHH-HcCCEEEeCCEEEEEEEeCCEEE-EEEEe-----------CCeeEEEEeCEEEEeeCCccC
Confidence            33334444454 67999999999999987666443 32221           012357999999999996643

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=98.10  E-value=5.2e-05  Score=75.66  Aligned_cols=99  Identities=19%  Similarity=0.193  Sum_probs=70.6

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -+++|||+|.+|+.+|..+++. |.+|+|+|+.+.+..                                      ....
T Consensus       171 ~~vvIIGgG~iG~E~A~~l~~~-g~~Vtli~~~~~ll~--------------------------------------~~d~  211 (458)
T PRK06912        171 SSLLIVGGGVIGCEFASIYSRL-GTKVTIVEMAPQLLP--------------------------------------GEDE  211 (458)
T ss_pred             CcEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCcCc--------------------------------------cccH
Confidence            4799999999999999999999 999999998754210                                      0012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      ++.+.+.+.+. +.|++++++++++++..+++.+. +...             ++..++.+|.||+|+|....
T Consensus       212 e~~~~l~~~L~-~~GI~i~~~~~V~~i~~~~~~v~-~~~~-------------g~~~~i~~D~vivA~G~~p~  269 (458)
T PRK06912        212 DIAHILREKLE-NDGVKIFTGAALKGLNSYKKQAL-FEYE-------------GSIQEVNAEFVLVSVGRKPR  269 (458)
T ss_pred             HHHHHHHHHHH-HCCCEEEECCEEEEEEEcCCEEE-EEEC-------------CceEEEEeCEEEEecCCccC
Confidence            34445555555 57999999999999876544321 2111             12357999999999996543

>PRK06370 mercuric reductase; Validated

Probab=98.09  E-value=6.7e-05  Score=74.94  Aligned_cols=101  Identities=13%  Similarity=0.165  Sum_probs=71.5

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -+|+|||+|..|+.+|..|++. |.+|+++|+.+.+...                                      ...
T Consensus       172 ~~vvVIGgG~~g~E~A~~l~~~-G~~Vtli~~~~~~l~~--------------------------------------~~~  212 (463)
T PRK06370        172 EHLVIIGGGYIGLEFAQMFRRF-GSEVTVIERGPRLLPR--------------------------------------EDE  212 (463)
T ss_pred             CEEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCCCCcc--------------------------------------cCH
Confidence            4799999999999999999999 9999999987643210                                      012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      ++...+.+.+. +.|++++++++++++..+++.+ .+....       .    ++..++.+|.||+|+|....
T Consensus       213 ~~~~~l~~~l~-~~GV~i~~~~~V~~i~~~~~~~-~v~~~~-------~----~~~~~i~~D~Vi~A~G~~pn  272 (463)
T PRK06370        213 DVAAAVREILE-REGIDVRLNAECIRVERDGDGI-AVGLDC-------N----GGAPEITGSHILVAVGRVPN  272 (463)
T ss_pred             HHHHHHHHHHH-hCCCEEEeCCEEEEEEEcCCEE-EEEEEe-------C----CCceEEEeCEEEECcCCCcC
Confidence            23334444454 6799999999999998765543 222210       0    12357999999999996543

>TIGR02053 MerA mercuric reductase

Probab=98.09  E-value=6.4e-05  Score=75.10  Aligned_cols=101  Identities=14%  Similarity=0.233  Sum_probs=70.9

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -+|+|||+|..|+.+|..|++. |.+|+|+|+.+.+...                                      ...
T Consensus       167 ~~vvIIGgG~~g~E~A~~l~~~-g~~Vtli~~~~~~l~~--------------------------------------~d~  207 (463)
T TIGR02053       167 ESLAVIGGGAIGVELAQAFARL-GSEVTILQRSDRLLPR--------------------------------------EEP  207 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCcEEEEEcCCcCCCc--------------------------------------cCH
Confidence            4799999999999999999999 9999999987542100                                      012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      ++...+.+.+. +.|++++++++|+++..+++.+ .+....           .++..++.+|.||+|+|....
T Consensus       208 ~~~~~l~~~l~-~~gV~i~~~~~V~~i~~~~~~~-~v~~~~-----------~~~~~~i~~D~ViiA~G~~p~  267 (463)
T TIGR02053       208 EISAAVEEALA-EEGIEVVTSAQVKAVSVRGGGK-IITVEK-----------PGGQGEVEADELLVATGRRPN  267 (463)
T ss_pred             HHHHHHHHHHH-HcCCEEEcCcEEEEEEEcCCEE-EEEEEe-----------CCCceEEEeCEEEEeECCCcC
Confidence            23334444444 6799999999999998765432 233221           012367999999999996543

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.08  E-value=5.4e-05  Score=75.51  Aligned_cols=98  Identities=14%  Similarity=0.152  Sum_probs=72.4

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.|+|||+|..|+.+|..|++. |.+|+|+|+.+.+...                                      ...
T Consensus       176 ~~v~IiGgG~~g~E~A~~l~~~-g~~Vtli~~~~~~l~~--------------------------------------~d~  216 (461)
T PRK05249        176 RSLIIYGAGVIGCEYASIFAAL-GVKVTLINTRDRLLSF--------------------------------------LDD  216 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCcCCc--------------------------------------CCH
Confidence            5799999999999999999999 9999999987643210                                      013


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      ++...+.+.+. +.|++++.++.++++..+++.+. +...              +..++.+|.||+|+|....
T Consensus       217 ~~~~~l~~~l~-~~gI~v~~~~~v~~i~~~~~~~~-v~~~--------------~g~~i~~D~vi~a~G~~p~  273 (461)
T PRK05249        217 EISDALSYHLR-DSGVTIRHNEEVEKVEGGDDGVI-VHLK--------------SGKKIKADCLLYANGRTGN  273 (461)
T ss_pred             HHHHHHHHHHH-HcCCEEEECCEEEEEEEeCCeEE-EEEC--------------CCCEEEeCEEEEeecCCcc
Confidence            34445555554 66999999999999987655433 2232              1256999999999996543

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.08  E-value=6.8e-05  Score=75.00  Aligned_cols=102  Identities=22%  Similarity=0.307  Sum_probs=71.7

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.|+|||+|..|+.+|..|++. |.+|+|+|+.+.+...                                      ...
T Consensus       173 ~~vvVIGgG~ig~E~A~~l~~~-G~~Vtlv~~~~~~l~~--------------------------------------~d~  213 (466)
T PRK07818        173 KSIVIAGAGAIGMEFAYVLKNY-GVDVTIVEFLDRALPN--------------------------------------EDA  213 (466)
T ss_pred             CeEEEECCcHHHHHHHHHHHHc-CCeEEEEecCCCcCCc--------------------------------------cCH
Confidence            4799999999999999999999 9999999987532100                                      012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      ++...+.+.+. +.|++++++++|+++..+++.+. +....       .   +++..++.+|.||+|+|....
T Consensus       214 ~~~~~l~~~l~-~~gV~i~~~~~v~~i~~~~~~~~-v~~~~-------~---~g~~~~i~~D~vi~a~G~~pn  274 (466)
T PRK07818        214 EVSKEIAKQYK-KLGVKILTGTKVESIDDNGSKVT-VTVSK-------K---DGKAQELEADKVLQAIGFAPR  274 (466)
T ss_pred             HHHHHHHHHHH-HCCCEEEECCEEEEEEEeCCeEE-EEEEe-------c---CCCeEEEEeCEEEECcCcccC
Confidence            33444555554 67999999999999976554432 22210       0   112357999999999996543

>PRK06116 glutathione reductase; Validated

Probab=98.08  E-value=5.6e-05  Score=75.24  Aligned_cols=99  Identities=12%  Similarity=0.144  Sum_probs=71.7

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.|+|||+|..|+.+|..|++. |.+|+++++.+.+..                                      ....
T Consensus       168 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~l~--------------------------------------~~~~  208 (450)
T PRK06116        168 KRVAVVGAGYIAVEFAGVLNGL-GSETHLFVRGDAPLR--------------------------------------GFDP  208 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCcc--------------------------------------ccCH
Confidence            4799999999999999999999 999999998753210                                      0012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      ++...+.+.+. +.|++++++++|+++..+++....+.+.+              +.++.+|.||+|+|....
T Consensus       209 ~~~~~l~~~L~-~~GV~i~~~~~V~~i~~~~~g~~~v~~~~--------------g~~i~~D~Vv~a~G~~p~  266 (450)
T PRK06116        209 DIRETLVEEME-KKGIRLHTNAVPKAVEKNADGSLTLTLED--------------GETLTVDCLIWAIGREPN  266 (450)
T ss_pred             HHHHHHHHHHH-HCCcEEECCCEEEEEEEcCCceEEEEEcC--------------CcEEEeCEEEEeeCCCcC
Confidence            33445555554 67999999999999987644322233321              356899999999996543

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=98.08  E-value=3.6e-05  Score=72.98  Aligned_cols=60  Identities=17%  Similarity=0.264  Sum_probs=49.0

Q ss_pred             chHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          168 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       168 ~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      +...+...|.+.+. +.|++++.+++|+++..+++++.+|.+.               ..+++||.||+|+|.+..
T Consensus       135 ~p~~l~~~l~~~~~-~~g~~~~~~~~v~~i~~~~~~~~~v~~~---------------~g~~~a~~vV~a~G~~~~  194 (337)
T TIGR02352       135 DPRALLKALEKALE-KLGVEIIEHTEVQHIEIRGEKVTAIVTP---------------SGDVQADQVVLAAGAWAG  194 (337)
T ss_pred             ChHHHHHHHHHHHH-HcCCEEEccceEEEEEeeCCEEEEEEcC---------------CCEEECCEEEEcCChhhh
Confidence            45677788888776 6799999999999999888888877764               247999999999997764

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>PTZ00188 adrenodoxin reductase; Provisional

Probab=98.07  E-value=6.8e-06  Score=81.43  Aligned_cols=37  Identities=30%  Similarity=0.568  Sum_probs=33.3

Q ss_pred             ccEEEECCCHHHHHHHHHhh-cCCCCeEEEEeccCCCCC
Q 018414           91 TDVVVVGAGSAGLSCAYELS-KNPNIQIAIIEQSVSPGG  128 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La-~~~G~~V~llEk~~~~Gg  128 (356)
                      ..|+|||+||||+.+|.+|. +. |++|.|+||.+.+||
T Consensus        40 krVAIVGaGPAGlyaA~~Ll~~~-g~~VtlfEk~p~pgG   77 (506)
T PTZ00188         40 FKVGIIGAGPSALYCCKHLLKHE-RVKVDIFEKLPNPYG   77 (506)
T ss_pred             CEEEEECCcHHHHHHHHHHHHhc-CCeEEEEecCCCCcc
Confidence            57999999999999999765 56 999999999998876

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=98.07  E-value=3.6e-06  Score=83.35  Aligned_cols=38  Identities=39%  Similarity=0.672  Sum_probs=35.1

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCC--CeEEEEeccCCCCCcc
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPN--IQIAIIEQSVSPGGGA  130 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G--~~V~llEk~~~~Gg~~  130 (356)
                      +|+|||||++||+||+.|+++ |  ++|+|+|+...+||..
T Consensus         2 ~v~IVGaGiaGL~aA~~L~~~-G~~~~V~vlEa~~~~GGr~   41 (451)
T PRK11883          2 KVAIIGGGITGLSAAYRLHKK-GPDADITLLEASDRLGGKI   41 (451)
T ss_pred             eEEEECCCHHHHHHHHHHHHh-CCCCCEEEEEcCCCCcceE
Confidence            699999999999999999997 6  8999999999998754

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.06  E-value=5.6e-05  Score=75.00  Aligned_cols=97  Identities=25%  Similarity=0.286  Sum_probs=70.1

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.|+|||+|..|+.+|..|.+. |.+|+++++...+-...                                     ...
T Consensus       150 ~~vvVvGgG~~g~e~A~~l~~~-g~~Vtli~~~~~~l~~~-------------------------------------~~~  191 (444)
T PRK09564        150 KNIVIIGAGFIGLEAVEAAKHL-GKNVRIIQLEDRILPDS-------------------------------------FDK  191 (444)
T ss_pred             CEEEEECCCHHHHHHHHHHHhc-CCcEEEEeCCcccCchh-------------------------------------cCH
Confidence            5799999999999999999999 99999999875321000                                     013


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      ++.+.+.+.+. +.|++++++++++++.. ++++..+..+               ..++.+|.||+|+|...
T Consensus       192 ~~~~~l~~~l~-~~gI~v~~~~~v~~i~~-~~~~~~v~~~---------------~~~i~~d~vi~a~G~~p  246 (444)
T PRK09564        192 EITDVMEEELR-ENGVELHLNEFVKSLIG-EDKVEGVVTD---------------KGEYEADVVIVATGVKP  246 (444)
T ss_pred             HHHHHHHHHHH-HCCCEEEcCCEEEEEec-CCcEEEEEeC---------------CCEEEcCEEEECcCCCc
Confidence            34445555554 67999999999999954 4444444432               24699999999999543

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=98.06  E-value=2.6e-05  Score=72.90  Aligned_cols=38  Identities=32%  Similarity=0.587  Sum_probs=34.4

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG  129 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~  129 (356)
                      ..+|.|||+|.+||+||+.|+++  .+|+|+|.+...||.
T Consensus         8 r~~IAVIGsGisGLSAA~~Ls~r--hdVTLfEA~~rlGGh   45 (447)
T COG2907           8 RRKIAVIGSGISGLSAAWLLSRR--HDVTLFEADRRLGGH   45 (447)
T ss_pred             CcceEEEcccchhhhhHHhhhcc--cceEEEeccccccCc
Confidence            46899999999999999999986  899999999888754

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=98.06  E-value=7.9e-05  Score=73.84  Aligned_cols=100  Identities=17%  Similarity=0.184  Sum_probs=75.7

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.++|||||..|+..|..+++. |.+|+|||+.+.+-.                                      ....
T Consensus       174 ~~lvIiGgG~IGlE~a~~~~~L-G~~VTiie~~~~iLp--------------------------------------~~D~  214 (454)
T COG1249         174 KSLVIVGGGYIGLEFASVFAAL-GSKVTVVERGDRILP--------------------------------------GEDP  214 (454)
T ss_pred             CEEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCCCC--------------------------------------cCCH
Confidence            4699999999999999999999 999999999875321                                      0125


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      ++.+.+.+.+. +.|++++++++++.+...++. ..+..++            ++..++++|.|++|+|....
T Consensus       215 ei~~~~~~~l~-~~gv~i~~~~~v~~~~~~~~~-v~v~~~~------------g~~~~~~ad~vLvAiGR~Pn  273 (454)
T COG1249         215 EISKELTKQLE-KGGVKILLNTKVTAVEKKDDG-VLVTLED------------GEGGTIEADAVLVAIGRKPN  273 (454)
T ss_pred             HHHHHHHHHHH-hCCeEEEccceEEEEEecCCe-EEEEEec------------CCCCEEEeeEEEEccCCccC
Confidence            56666666666 478999999999999887665 3344432            12237899999999996543

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.05  E-value=8e-05  Score=74.51  Aligned_cols=102  Identities=17%  Similarity=0.173  Sum_probs=71.3

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.|+|||+|..|+..|..+++. |.+|+|+|+.+.+...                                      ...
T Consensus       175 ~~vvIIGgG~ig~E~A~~l~~~-G~~Vtlie~~~~il~~--------------------------------------~d~  215 (466)
T PRK06115        175 KHLVVIGAGVIGLELGSVWRRL-GAQVTVVEYLDRICPG--------------------------------------TDT  215 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCeEEEEeCCCCCCCC--------------------------------------CCH
Confidence            4799999999999999999999 9999999987543110                                      012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      ++...+.+.+. +.|++++++++++++..+++.+. +....      .+   .++...+.+|.||+|+|...
T Consensus       216 ~~~~~l~~~l~-~~gV~i~~~~~V~~i~~~~~~v~-v~~~~------~~---~g~~~~i~~D~vi~a~G~~p  276 (466)
T PRK06115        216 ETAKTLQKALT-KQGMKFKLGSKVTGATAGADGVS-LTLEP------AA---GGAAETLQADYVLVAIGRRP  276 (466)
T ss_pred             HHHHHHHHHHH-hcCCEEEECcEEEEEEEcCCeEE-EEEEE------cC---CCceeEEEeCEEEEccCCcc
Confidence            23344555554 67999999999999976554432 22210      00   11346799999999999654

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.04  E-value=8.2e-05  Score=72.73  Aligned_cols=139  Identities=22%  Similarity=0.225  Sum_probs=77.7

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCC--CCeEEEEeccCCCCCccccCCccc--------hhhhcc-----chHHHHHHHhCC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNP--NIQIAIIEQSVSPGGGAWLGGQLF--------SAMVVR-----KPAHIFLDELGI  155 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~--G~~V~llEk~~~~Gg~~~~~g~~~--------~~~~~~-----~~~~~~l~~~G~  155 (356)
                      ++|+|||+|++|+.+|.+|.+.+  ..++.|+|+....|.+.-......        ..+...     ....+||...+.
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~   81 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ   81 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence            68999999999999999998842  334999999988876542211111        111112     135688887633


Q ss_pred             Ccccc------CC-eEEEechHHHHHHHHHHHHcCC--C-cEEEcCeEEEEEEEeC-CeEEEEEEcceeeecccCCCCCC
Q 018414          156 DYDEQ------DN-YVVIKHAALFTSTIMSKLLARP--N-VKLFNAVAAEDLIVKG-GRVGGVVTNWALVSMNHDTQSCM  224 (356)
Q Consensus       156 ~~~~~------~~-~~~~~~~~~~~~~l~~~~~~~~--g-v~i~~~~~v~~i~~~~-~~v~gv~~~~~~~~~~~~~~~~g  224 (356)
                      .+...      +. |+...--.+|....++.+.++.  . +.++. .+++++..++ +...-+...              
T Consensus        82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~-~~a~~~~~~~n~~~~~~~~~--------------  146 (474)
T COG4529          82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIR-EEATSVRQDTNAGGYLVTTA--------------  146 (474)
T ss_pred             ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEe-eeeecceeccCCceEEEecC--------------
Confidence            33211      11 2211112334433344443322  1 44333 3666666553 333333332              


Q ss_pred             CCeEEEcCEEEEcCCCCCCC
Q 018414          225 DPNVMEAKVVVSSCGHDGPF  244 (356)
Q Consensus       225 ~~~~i~Ak~VI~AtGg~~~~  244 (356)
                      ++....|+.+|+|||+..+.
T Consensus       147 ~g~~~~ad~~Vlatgh~~~~  166 (474)
T COG4529         147 DGPSEIADIIVLATGHSAPP  166 (474)
T ss_pred             CCCeeeeeEEEEeccCCCCC
Confidence            24678899999999986643

>PRK13984 putative oxidoreductase; Provisional

Probab=98.03  E-value=9.2e-06  Score=83.89  Aligned_cols=39  Identities=38%  Similarity=0.694  Sum_probs=35.6

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCC
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG  128 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg  128 (356)
                      ...+|+|||+|++|+++|..|++. |++|+|+|+...+||
T Consensus       282 ~~~~v~IIGaG~aGl~aA~~L~~~-G~~v~vie~~~~~gG  320 (604)
T PRK13984        282 KNKKVAIVGSGPAGLSAAYFLATM-GYEVTVYESLSKPGG  320 (604)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCCCc
Confidence            356899999999999999999999 999999999987765

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.03  E-value=2.4e-05  Score=68.87  Aligned_cols=116  Identities=15%  Similarity=0.197  Sum_probs=76.9

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      ..|+|||+||++-.+|+++++. .+|-+|+|-.. .++ .-.+|++....-               .+.-+.|+--....
T Consensus         9 e~v~IiGSGPAa~tAAiYaara-elkPllfEG~~-~~~-i~pGGQLtTTT~---------------veNfPGFPdgi~G~   70 (322)
T KOG0404|consen    9 ENVVIIGSGPAAHTAAIYAARA-ELKPLLFEGMM-ANG-IAPGGQLTTTTD---------------VENFPGFPDGITGP   70 (322)
T ss_pred             eeEEEEccCchHHHHHHHHhhc-ccCceEEeeee-ccC-cCCCceeeeeec---------------cccCCCCCcccccH
Confidence            5899999999999999999999 89999999653 221 122333322110               01112333334557


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      ++++.+.++.. +.|.+++.+ .|.++..... ...+.+.               ...+.++.||+|||+..
T Consensus        71 ~l~d~mrkqs~-r~Gt~i~tE-tVskv~~ssk-pF~l~td---------------~~~v~~~avI~atGAsA  124 (322)
T KOG0404|consen   71 ELMDKMRKQSE-RFGTEIITE-TVSKVDLSSK-PFKLWTD---------------ARPVTADAVILATGASA  124 (322)
T ss_pred             HHHHHHHHHHH-hhcceeeee-ehhhccccCC-CeEEEec---------------CCceeeeeEEEecccce
Confidence            77777777665 779999888 5777766543 3333332               36789999999999765

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=98.02  E-value=3.2e-05  Score=74.63  Aligned_cols=105  Identities=13%  Similarity=0.194  Sum_probs=64.6

Q ss_pred             cEEEECCCHHHHHHHHHhhcC--CCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414           92 DVVVVGAGSAGLSCAYELSKN--PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~--~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~  169 (356)
                      .|||||||++|+.+|.+|.++  ++.+|+|||+....-   +. ..+ .         .++.  |           ....
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~---~~-~~~-~---------~~~~--g-----------~~~~   53 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTP---YS-GML-P---------GMIA--G-----------HYSL   53 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCc---cc-chh-h---------HHHh--e-----------eCCH
Confidence            489999999999999999642  378999999886421   00 000 0         0000  0           0011


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      .++...+.+.+ ++.|++++.+ +|+.+..++..   |.+.+              ..++++|++|+|||+..
T Consensus        54 ~~~~~~~~~~~-~~~gv~~~~~-~v~~id~~~~~---V~~~~--------------g~~~~yD~LviAtG~~~  107 (364)
T TIGR03169        54 DEIRIDLRRLA-RQAGARFVIA-EATGIDPDRRK---VLLAN--------------RPPLSYDVLSLDVGSTT  107 (364)
T ss_pred             HHhcccHHHHH-HhcCCEEEEE-EEEEEecccCE---EEECC--------------CCcccccEEEEccCCCC
Confidence            22222222223 3568999876 78888776653   33321              35689999999999765

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PLN02576 protoporphyrinogen oxidase

Probab=98.02  E-value=6e-06  Score=83.10  Aligned_cols=41  Identities=37%  Similarity=0.637  Sum_probs=36.7

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~  130 (356)
                      ++||+|||||++||++|++|+++.|.+|+|+|+...+||.+
T Consensus        12 ~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~   52 (496)
T PLN02576         12 SKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNI   52 (496)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCce
Confidence            47999999999999999999885269999999999998765

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.02  E-value=9.7e-05  Score=73.59  Aligned_cols=100  Identities=11%  Similarity=0.069  Sum_probs=71.5

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.|+|||||..|+..|..|++. |.+|+|+|+.+.+...                                      ...
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~~-g~~Vtli~~~~~il~~--------------------------------------~d~  207 (450)
T TIGR01421       167 KRVVIVGAGYIAVELAGVLHGL-GSETHLVIRHERVLRS--------------------------------------FDS  207 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCCCcc--------------------------------------cCH
Confidence            4799999999999999999999 9999999988643210                                      012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      ++...+.+.+. +.|++++.++.++++..+++....+...+             ....+.+|.||+|+|....
T Consensus       208 ~~~~~~~~~l~-~~gI~i~~~~~v~~i~~~~~~~~~v~~~~-------------g~~~i~~D~vi~a~G~~pn  266 (450)
T TIGR01421       208 MISETITEEYE-KEGINVHKLSKPVKVEKTVEGKLVIHFED-------------GKSIDDVDELIWAIGRKPN  266 (450)
T ss_pred             HHHHHHHHHHH-HcCCEEEcCCEEEEEEEeCCceEEEEECC-------------CcEEEEcCEEEEeeCCCcC
Confidence            33444555554 67999999999999976543322233321             1256999999999996543

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=97.99  E-value=0.00014  Score=72.96  Aligned_cols=102  Identities=15%  Similarity=0.173  Sum_probs=73.0

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.|+|||+|..|+.+|..|++. |.+|+|+|+.+.+...                                      ...
T Consensus       184 ~~vvVvGgG~~g~E~A~~l~~~-g~~Vtli~~~~~~l~~--------------------------------------~d~  224 (475)
T PRK06327        184 KKLAVIGAGVIGLELGSVWRRL-GAEVTILEALPAFLAA--------------------------------------ADE  224 (475)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCeEEEEeCCCccCCc--------------------------------------CCH
Confidence            4799999999999999999999 9999999987642100                                      013


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      ++...+.+.+. +.|++++.+++|+++..+++.+. +...+      .    +++..++.+|.||+|+|....
T Consensus       225 ~~~~~~~~~l~-~~gi~i~~~~~v~~i~~~~~~v~-v~~~~------~----~g~~~~i~~D~vl~a~G~~p~  285 (475)
T PRK06327        225 QVAKEAAKAFT-KQGLDIHLGVKIGEIKTGGKGVS-VAYTD------A----DGEAQTLEVDKLIVSIGRVPN  285 (475)
T ss_pred             HHHHHHHHHHH-HcCcEEEeCcEEEEEEEcCCEEE-EEEEe------C----CCceeEEEcCEEEEccCCccC
Confidence            33444555554 57999999999999987665543 33221      0    112357999999999996543

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=97.99  E-value=6.4e-05  Score=73.10  Aligned_cols=99  Identities=27%  Similarity=0.308  Sum_probs=74.4

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      .+++|||+|+.|+.+|..|+++ |++|+++|+...+++....                                     .
T Consensus       137 ~~v~vvG~G~~gle~A~~~~~~-G~~v~l~e~~~~~~~~~~~-------------------------------------~  178 (415)
T COG0446         137 KDVVVVGAGPIGLEAAEAAAKR-GKKVTLIEAADRLGGQLLD-------------------------------------P  178 (415)
T ss_pred             CeEEEECCcHHHHHHHHHHHHc-CCeEEEEEcccccchhhhh-------------------------------------H
Confidence            6999999999999999999999 9999999999876542210                                     2


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEE--EEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGG--VVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g--v~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      .+...+.+.+. +.|+++++++.+.++...++....  +...              ....+.+|.++++.|...
T Consensus       179 ~~~~~~~~~l~-~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~--------------~~~~~~~d~~~~~~g~~p  237 (415)
T COG0446         179 EVAEELAELLE-KYGVELLLGTKVVGVEGKGNTLVVERVVGI--------------DGEEIKADLVIIGPGERP  237 (415)
T ss_pred             HHHHHHHHHHH-HCCcEEEeCCceEEEEcccCcceeeEEEEe--------------CCcEEEeeEEEEeecccc
Confidence            23334444443 678999999999999877654433  2222              247799999999999665

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.98  E-value=1e-05  Score=82.89  Aligned_cols=38  Identities=39%  Similarity=0.652  Sum_probs=35.2

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG  128 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg  128 (356)
                      ..+|+|||+|++||++|+.|++. |++|+|+|+...+||
T Consensus       137 g~~V~VIGaGpaGL~aA~~l~~~-G~~V~v~e~~~~~GG  174 (564)
T PRK12771        137 GKRVAVIGGGPAGLSAAYHLRRM-GHAVTIFEAGPKLGG  174 (564)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCCCC
Confidence            46899999999999999999999 999999999988775

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=97.96  E-value=8.7e-05  Score=75.22  Aligned_cols=98  Identities=20%  Similarity=0.348  Sum_probs=71.8

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -+|+|||||..|+.+|..|++. +.+|+++|+.+.+.                                         ..
T Consensus       353 k~VvViGgG~~g~E~A~~L~~~-g~~Vtli~~~~~l~-----------------------------------------~~  390 (515)
T TIGR03140       353 KDVAVIGGGNSGIEAAIDLAGI-VRHVTVLEFADELK-----------------------------------------AD  390 (515)
T ss_pred             CEEEEECCcHHHHHHHHHHHhc-CcEEEEEEeCCcCC-----------------------------------------hh
Confidence            4899999999999999999998 99999999764321                                         00


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                         ..+.+.+.+..|+++++++.++++..+++++.++.+.+      ..   .++..++.+|.||+|+|...
T Consensus       391 ---~~l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~------~~---~~~~~~i~~D~vi~a~G~~P  450 (515)
T TIGR03140       391 ---KVLQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQD------RN---SGEEKQLDLDGVFVQIGLVP  450 (515)
T ss_pred             ---HHHHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEE------CC---CCcEEEEEcCEEEEEeCCcC
Confidence               12333443346999999999999987667777776542      11   12346799999999999554

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>KOG2403 consensus Succinate dehydrogenase, flavoprotein subunit [Energy production and conversion]

Probab=97.96  E-value=1.2e-05  Score=79.16  Aligned_cols=191  Identities=23%  Similarity=0.269  Sum_probs=100.3

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCC--------CCcc-----------------------ccCCccch
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSP--------GGGA-----------------------WLGGQLFS  138 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~--------Gg~~-----------------------~~~g~~~~  138 (356)
                      .||.+|||+|.+|+.+|..|++. |.++.++-|....        ||..                       |.+..-..
T Consensus        55 ~~da~vvgaggAGlr~~~~lae~-g~~~a~itkl~p~~s~tvaaqGg~nA~l~~m~~d~~~~h~~dtv~~sd~l~dqd~i  133 (642)
T KOG2403|consen   55 TYDAVVVGAGGAGLRAARGLAEL-GEKTAVITKLFPTRSHTVAAQGGINAALGNMGNDNWRWHMYDTVKGSDWLGDQDAI  133 (642)
T ss_pred             eceeEEEeccchhhhhhhhhhhc-CceEEEEeccccccccchhhhhhhhhhhccCCCchhhhhhhhccccccccCchhhh
Confidence            38999999999999999999999 9999999885321        1110                       11111111


Q ss_pred             hhhccc--hHHHHHHHhCCCccccCCe---------------------EE----EechHHHHHHHHHHHHcCCCcEEEcC
Q 018414          139 AMVVRK--PAHIFLDELGIDYDEQDNY---------------------VV----IKHAALFTSTIMSKLLARPNVKLFNA  191 (356)
Q Consensus       139 ~~~~~~--~~~~~l~~~G~~~~~~~~~---------------------~~----~~~~~~~~~~l~~~~~~~~gv~i~~~  191 (356)
                      +.+.+.  .....|+.+|.+|....+-                     ..    ..-...+...|+...++. +..++..
T Consensus       134 ~ym~~ea~~a~~el~~~g~~fs~~~dg~i~q~~~gg~s~~~gkggq~~r~~~~Ad~tg~~~~~tL~~~~l~~-~~~~f~~  212 (642)
T KOG2403|consen  134 HYMCREAPKAVIELENYGMPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRACCVADRTGHALLHTLYGQSLRH-NTSFFVE  212 (642)
T ss_pred             hHHHhhcchhHHHHHhccCccccccCCcHHHhhhhccccCcccccccccEEEeecccccHHHhhhHHHHhcc-chhhHHH
Confidence            111111  2345666778877643110                     00    001234455666665532 4444333


Q ss_pred             eEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCCCCccchhhhccCccccccccccccccc
Q 018414          192 VAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNS  271 (356)
Q Consensus       192 ~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  271 (356)
                      .-..+++...+.+.++..-.      .+   ++....++++.+|+|+|++|....+......-.+....+....++.+.+
T Consensus       213 yfa~dll~~~g~~~~~va~~------~~---d~~i~~~r~~~ti~a~gg~G~~y~s~t~~~t~TgdG~a~~~ra~~~l~d  283 (642)
T KOG2403|consen  213 YFALDLLMSQGECVGVIALN------LE---DGTIHRFRAKNTILATGGYGRAYFSCTSAHTCTGDGNAMASRAGAPLSD  283 (642)
T ss_pred             HHHHHHHHhccCceEEEEEE------ee---cccceeeeeeeeEEEEeccceEEEEeccCeeEccCCCeEEeeccCCCcc
Confidence            33444444444444444321      11   2346789999999999999876554433333333333333333333433


Q ss_pred             ccceeeeccccccCceeEeceEEEE
Q 018414          272 AEDAIVRLTREVVPGMIVTGMEVAE  296 (356)
Q Consensus       272 ~~~~~~~~~~e~~~g~~~~~~~~~~  296 (356)
                      .+-..+..     .+++..|+.+++
T Consensus       284 ~efvqfhp-----t~i~g~Gclite  303 (642)
T KOG2403|consen  284 MEFVQFHP-----TGIYGAGCLITE  303 (642)
T ss_pred             cceeeeee-----ecccccceeeee
Confidence            22222333     455555555544

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=97.95  E-value=8.8e-06  Score=81.06  Aligned_cols=40  Identities=35%  Similarity=0.635  Sum_probs=36.3

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCC---CCeEEEEeccCCCCCcc
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNP---NIQIAIIEQSVSPGGGA  130 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~---G~~V~llEk~~~~Gg~~  130 (356)
                      .||+|||||++||++|+.|+++.   |++|+|+|+...+||.+
T Consensus         3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~   45 (462)
T TIGR00562         3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKI   45 (462)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceE
Confidence            58999999999999999999862   79999999999998765

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=97.94  E-value=5.8e-05  Score=80.51  Aligned_cols=107  Identities=11%  Similarity=0.121  Sum_probs=66.2

Q ss_pred             ccEEEECCCHHHHHHHHHhhcC---CCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEe
Q 018414           91 TDVVVVGAGSAGLSCAYELSKN---PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIK  167 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~---~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~  167 (356)
                      .+|||||+|++|+.+|..|.++   ++++|+||++.+.+.   |..-.+ ...+...                       
T Consensus         4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~---Y~r~~L-~~~~~~~-----------------------   56 (847)
T PRK14989          4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA---YDRVHL-SSYFSHH-----------------------   56 (847)
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc---ccCCcc-hHhHcCC-----------------------
Confidence            4799999999999999999653   268999999987643   111000 0000000                       


Q ss_pred             chHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          168 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       168 ~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      ...++.....+.+ ++.|++++.+++|+.+..+...   |.+.              +..++.+|++|+|||+..
T Consensus        57 ~~~~l~~~~~~~~-~~~gI~~~~g~~V~~Id~~~~~---V~~~--------------~G~~i~yD~LVIATGs~p  113 (847)
T PRK14989         57 TAEELSLVREGFY-EKHGIKVLVGERAITINRQEKV---IHSS--------------AGRTVFYDKLIMATGSYP  113 (847)
T ss_pred             CHHHccCCCHHHH-HhCCCEEEcCCEEEEEeCCCcE---EEEC--------------CCcEEECCEEEECCCCCc
Confidence            0011111111122 2569999999999988665432   2332              135799999999999764

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=97.94  E-value=0.00015  Score=72.16  Aligned_cols=97  Identities=11%  Similarity=0.164  Sum_probs=70.0

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.++|||+|..|+.+|..+++. |.+|+++++.+.+...                                      ...
T Consensus       167 ~~vvVIGgG~~g~E~A~~l~~~-G~~Vtli~~~~~~l~~--------------------------------------~d~  207 (446)
T TIGR01424       167 KSILILGGGYIAVEFAGIWRGL-GVQVTLIYRGELILRG--------------------------------------FDD  207 (446)
T ss_pred             CeEEEECCcHHHHHHHHHHHHc-CCeEEEEEeCCCCCcc--------------------------------------cCH
Confidence            4799999999999999999999 9999999987532100                                      012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      ++...+.+.+. +.|++++.+++++++..+++.+. +...              +..++.+|.||+|+|...
T Consensus       208 ~~~~~l~~~l~-~~gV~i~~~~~v~~i~~~~~~~~-v~~~--------------~g~~i~~D~viva~G~~p  263 (446)
T TIGR01424       208 DMRALLARNME-GRGIRIHPQTSLTSITKTDDGLK-VTLS--------------HGEEIVADVVLFATGRSP  263 (446)
T ss_pred             HHHHHHHHHHH-HCCCEEEeCCEEEEEEEcCCeEE-EEEc--------------CCcEeecCEEEEeeCCCc
Confidence            33334445554 67999999999999976554432 3222              135799999999999654

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.93  E-value=0.00017  Score=71.64  Aligned_cols=97  Identities=13%  Similarity=0.170  Sum_probs=70.8

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.|+|||+|..|+..|..|++. |.+|+|+|+.+.+...                                      ...
T Consensus       159 ~~v~ViGgG~~g~E~A~~l~~~-g~~Vtli~~~~~~l~~--------------------------------------~~~  199 (441)
T PRK08010        159 GHLGILGGGYIGVEFASMFANF-GSKVTILEAASLFLPR--------------------------------------EDR  199 (441)
T ss_pred             CeEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCCCCC--------------------------------------cCH
Confidence            3799999999999999999999 9999999987532100                                      012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      .+...+.+.+. +.|+++++++.++++..+++.+. +...               ..++.+|.||+|+|....
T Consensus       200 ~~~~~l~~~l~-~~gV~v~~~~~v~~i~~~~~~v~-v~~~---------------~g~i~~D~vl~a~G~~pn  255 (441)
T PRK08010        200 DIADNIATILR-DQGVDIILNAHVERISHHENQVQ-VHSE---------------HAQLAVDALLIASGRQPA  255 (441)
T ss_pred             HHHHHHHHHHH-hCCCEEEeCCEEEEEEEcCCEEE-EEEc---------------CCeEEeCEEEEeecCCcC
Confidence            33344555554 67999999999999987665432 2221               135889999999996654

>PLN02507 glutathione reductase

Probab=97.92  E-value=0.00017  Score=72.75  Aligned_cols=98  Identities=17%  Similarity=0.212  Sum_probs=71.2

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -+|+|||+|..|+..|..+++. |.+|+|+++.+.+-..                                      ...
T Consensus       204 k~vvVIGgG~ig~E~A~~l~~~-G~~Vtli~~~~~~l~~--------------------------------------~d~  244 (499)
T PLN02507        204 KRAVVLGGGYIAVEFASIWRGM-GATVDLFFRKELPLRG--------------------------------------FDD  244 (499)
T ss_pred             CeEEEECCcHHHHHHHHHHHHc-CCeEEEEEecCCcCcc--------------------------------------cCH
Confidence            4799999999999999999999 9999999987532100                                      012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      ++...+.+.+. +.|++++.++.|+++..+++.+. +...              +..++.+|.||+|+|....
T Consensus       245 ~~~~~l~~~l~-~~GI~i~~~~~V~~i~~~~~~~~-v~~~--------------~g~~i~~D~vl~a~G~~pn  301 (499)
T PLN02507        245 EMRAVVARNLE-GRGINLHPRTNLTQLTKTEGGIK-VITD--------------HGEEFVADVVLFATGRAPN  301 (499)
T ss_pred             HHHHHHHHHHH-hCCCEEEeCCEEEEEEEeCCeEE-EEEC--------------CCcEEEcCEEEEeecCCCC
Confidence            33344445554 67999999999999986655432 2221              1356999999999996654

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.92  E-value=0.00018  Score=72.00  Aligned_cols=98  Identities=17%  Similarity=0.235  Sum_probs=71.0

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.++|||+|..|+.+|..|++. |.+|+++++.+.+...                                      ...
T Consensus       178 ~~vvVIGgG~ig~E~A~~l~~~-g~~Vtli~~~~~~l~~--------------------------------------~d~  218 (466)
T PRK07845        178 EHLIVVGSGVTGAEFASAYTEL-GVKVTLVSSRDRVLPG--------------------------------------EDA  218 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCcCCCC--------------------------------------CCH
Confidence            4799999999999999999999 9999999987543210                                      012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      .+...+.+.+. +.|++++++++++++..+++.+. +...              +..++.+|.||+|+|....
T Consensus       219 ~~~~~l~~~L~-~~gV~i~~~~~v~~v~~~~~~~~-v~~~--------------~g~~l~~D~vl~a~G~~pn  275 (466)
T PRK07845        219 DAAEVLEEVFA-RRGMTVLKRSRAESVERTGDGVV-VTLT--------------DGRTVEGSHALMAVGSVPN  275 (466)
T ss_pred             HHHHHHHHHHH-HCCcEEEcCCEEEEEEEeCCEEE-EEEC--------------CCcEEEecEEEEeecCCcC
Confidence            22334444444 67999999999999976665543 3332              1356899999999996654

>PRK14727 putative mercuric reductase; Provisional

Probab=97.92  E-value=0.00018  Score=72.28  Aligned_cols=96  Identities=14%  Similarity=0.184  Sum_probs=69.2

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.|+|||+|..|+..|..|++. |.+|+|+++......                                       ...
T Consensus       189 k~vvVIGgG~iG~E~A~~l~~~-G~~Vtlv~~~~~l~~---------------------------------------~d~  228 (479)
T PRK14727        189 ASLTVIGSSVVAAEIAQAYARL-GSRVTILARSTLLFR---------------------------------------EDP  228 (479)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCEEEEEEcCCCCCc---------------------------------------chH
Confidence            4799999999999999999999 999999987521100                                       012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      ++...+.+.+. +.|++++++++++.+..+++.+. +...               ..++.+|.||+|+|....
T Consensus       229 ~~~~~l~~~L~-~~GV~i~~~~~V~~i~~~~~~~~-v~~~---------------~g~i~aD~VlvA~G~~pn  284 (479)
T PRK14727        229 LLGETLTACFE-KEGIEVLNNTQASLVEHDDNGFV-LTTG---------------HGELRAEKLLISTGRHAN  284 (479)
T ss_pred             HHHHHHHHHHH-hCCCEEEcCcEEEEEEEeCCEEE-EEEc---------------CCeEEeCEEEEccCCCCC
Confidence            33344555554 67999999999999986655432 2221               245889999999996654

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=97.91  E-value=0.00024  Score=75.91  Aligned_cols=99  Identities=17%  Similarity=0.159  Sum_probs=70.6

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.++|||||..|+.+|..|++. |.+|+|+|+.+.+-.          .            .               -..
T Consensus       146 k~vvVIGgG~iGlE~A~~L~~~-G~~VtvVe~~~~ll~----------~------------~---------------ld~  187 (847)
T PRK14989        146 KRGAVVGGGLLGLEAAGALKNL-GVETHVIEFAPMLMA----------E------------Q---------------LDQ  187 (847)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCeEEEEeccccchh----------h------------h---------------cCH
Confidence            3699999999999999999999 999999998753110          0            0               012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeC-CeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      .....+.+.+. +.||++++++.++++..++ +....+...+              +.++.+|.||+|+|-..
T Consensus       188 ~~~~~l~~~L~-~~GV~v~~~~~v~~I~~~~~~~~~~v~~~d--------------G~~i~~D~Vv~A~G~rP  245 (847)
T PRK14989        188 MGGEQLRRKIE-SMGVRVHTSKNTLEIVQEGVEARKTMRFAD--------------GSELEVDFIVFSTGIRP  245 (847)
T ss_pred             HHHHHHHHHHH-HCCCEEEcCCeEEEEEecCCCceEEEEECC--------------CCEEEcCEEEECCCccc
Confidence            22334444454 6799999999999997543 3344454432              36799999999999554

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=97.91  E-value=0.00013  Score=72.11  Aligned_cols=96  Identities=19%  Similarity=0.255  Sum_probs=68.2

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.|+|||+|.+|+.+|..|++. |.+|+++++...+....                                     ...
T Consensus       138 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtli~~~~~~~~~~-------------------------------------~~~  179 (427)
T TIGR03385       138 ENVVIIGGGYIGIEMAEALRER-GKNVTLIHRSERILNKL-------------------------------------FDE  179 (427)
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-CCcEEEEECCcccCccc-------------------------------------cCH
Confidence            4899999999999999999999 99999999875421000                                     012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      .+...+.+.+. +.|+++++++.++++..+ +.+  +...              +..++.+|.||+|+|...
T Consensus       180 ~~~~~~~~~l~-~~gV~v~~~~~v~~i~~~-~~~--v~~~--------------~g~~i~~D~vi~a~G~~p  233 (427)
T TIGR03385       180 EMNQIVEEELK-KHEINLRLNEEVDSIEGE-ERV--KVFT--------------SGGVYQADMVILATGIKP  233 (427)
T ss_pred             HHHHHHHHHHH-HcCCEEEeCCEEEEEecC-CCE--EEEc--------------CCCEEEeCEEEECCCccC
Confidence            23334444444 679999999999998654 332  2222              135699999999999553

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PLN02676 polyamine oxidase

Probab=97.91  E-value=1.3e-05  Score=80.56  Aligned_cols=45  Identities=38%  Similarity=0.547  Sum_probs=38.8

Q ss_pred             cccCCcccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccCCCCCcc
Q 018414           85 MITYADTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSVSPGGGA  130 (356)
Q Consensus        85 m~~~~~~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~~~Gg~~  130 (356)
                      |.....+||+|||||++||+||+.|+++ |. +|+|+|++..+||..
T Consensus        21 ~~~~~~~~v~IIGaG~sGL~aa~~L~~~-g~~~v~vlE~~~~~GG~~   66 (487)
T PLN02676         21 MDAKPSPSVIIVGAGMSGISAAKTLSEA-GIEDILILEATDRIGGRM   66 (487)
T ss_pred             hcccCCCCEEEECCCHHHHHHHHHHHHc-CCCcEEEecCCCCCCCcc
Confidence            3344468999999999999999999999 88 699999999888753

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=97.91  E-value=4.4e-05  Score=81.09  Aligned_cols=106  Identities=17%  Similarity=0.207  Sum_probs=65.5

Q ss_pred             EEEECCCHHHHHHHHHhhcC--CCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           93 VVVVGAGSAGLSCAYELSKN--PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        93 VvIIGgG~aGl~aA~~La~~--~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      |||||+|+||+.+|.+|.+.  ++.+|+|||+.+.++-   ..-. ...++...          .            ...
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y---~r~~-L~~~l~g~----------~------------~~~   54 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNY---NRIL-LSSVLQGE----------A------------DLD   54 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCc---cccc-ccHHHCCC----------C------------CHH
Confidence            68999999999999988763  2679999999876531   1100 11111000          0            001


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      ++.....+.+ ++.|++++.+++|+.+..++..   |.+.              +..++.+|+||+|||...
T Consensus        55 ~l~~~~~~~~-~~~gv~~~~g~~V~~Id~~~k~---V~~~--------------~g~~~~yD~LVlATGs~p  108 (785)
T TIGR02374        55 DITLNSKDWY-EKHGITLYTGETVIQIDTDQKQ---VITD--------------AGRTLSYDKLILATGSYP  108 (785)
T ss_pred             HccCCCHHHH-HHCCCEEEcCCeEEEEECCCCE---EEEC--------------CCcEeeCCEEEECCCCCc
Confidence            1110111122 2569999999999999766543   2332              135799999999999764

>PRK14694 putative mercuric reductase; Provisional

Probab=97.91  E-value=0.00018  Score=72.00  Aligned_cols=96  Identities=15%  Similarity=0.251  Sum_probs=69.2

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.++|||+|..|+..|..|++. |.+|+++++......                                       ...
T Consensus       179 ~~vvViG~G~~G~E~A~~l~~~-g~~Vtlv~~~~~l~~---------------------------------------~~~  218 (468)
T PRK14694        179 ERLLVIGASVVALELAQAFARL-GSRVTVLARSRVLSQ---------------------------------------EDP  218 (468)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCeEEEEECCCCCCC---------------------------------------CCH
Confidence            4799999999999999999999 999999986421110                                       012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      ++...+.+.+. +.|+++++++.++++..+++.+. +...               ..++.+|.||+|+|....
T Consensus       219 ~~~~~l~~~l~-~~GI~v~~~~~v~~i~~~~~~~~-v~~~---------------~~~i~~D~vi~a~G~~pn  274 (468)
T PRK14694        219 AVGEAIEAAFR-REGIEVLKQTQASEVDYNGREFI-LETN---------------AGTLRAEQLLVATGRTPN  274 (468)
T ss_pred             HHHHHHHHHHH-hCCCEEEeCCEEEEEEEcCCEEE-EEEC---------------CCEEEeCEEEEccCCCCC
Confidence            33344455554 67999999999999876655332 3221               235999999999996654

>PRK10262 thioredoxin reductase; Provisional

Probab=97.89  E-value=0.00014  Score=69.05  Aligned_cols=102  Identities=18%  Similarity=0.222  Sum_probs=72.6

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.|+|||+|..|+.+|..|++. +.+|+++++...+..                                        ..
T Consensus       147 ~~vvVvGgG~~g~e~A~~l~~~-~~~Vtlv~~~~~~~~----------------------------------------~~  185 (321)
T PRK10262        147 QKVAVIGGGNTAVEEALYLSNI-ASEVHLIHRRDGFRA----------------------------------------EK  185 (321)
T ss_pred             CEEEEECCCHHHHHHHHHHHhh-CCEEEEEEECCccCC----------------------------------------CH
Confidence            4799999999999999999999 999999998753210                                        01


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      .+...+.+.+. +.|++++.++.++++..+++++.++...+.      ..  .++..++.+|.||+|+|...
T Consensus       186 ~~~~~~~~~l~-~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~------~~--~~~~~~i~~D~vv~a~G~~p  248 (321)
T PRK10262        186 ILIKRLMDKVE-NGNIILHTNRTLEEVTGDQMGVTGVRLRDT------QN--SDNIESLDVAGLFVAIGHSP  248 (321)
T ss_pred             HHHHHHHhhcc-CCCeEEEeCCEEEEEEcCCccEEEEEEEEc------CC--CCeEEEEECCEEEEEeCCcc
Confidence            12233444443 779999999999999765556666655321      00  01235799999999999554

>PLN02568 polyamine oxidase

Probab=97.89  E-value=1.6e-05  Score=80.81  Aligned_cols=40  Identities=30%  Similarity=0.579  Sum_probs=36.3

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCC-----CeEEEEeccCCCCCcc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPN-----IQIAIIEQSVSPGGGA  130 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G-----~~V~llEk~~~~Gg~~  130 (356)
                      ..||+|||||++||++|+.|++. |     ++|+|+|++..+||..
T Consensus         5 ~~~v~iiGaG~aGl~aa~~L~~~-g~~~~~~~v~v~E~~~~~GGr~   49 (539)
T PLN02568          5 KPRIVIIGAGMAGLTAANKLYTS-SAANDMFELTVVEGGDRIGGRI   49 (539)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhc-ccccCCceEEEEeCCCCcCCeE
Confidence            47999999999999999999987 6     8999999999888754

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.88  E-value=0.00024  Score=71.24  Aligned_cols=101  Identities=10%  Similarity=0.096  Sum_probs=71.0

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -+++|||+|..|+.+|..|++. |.+|+|||+.+.+...                                      ...
T Consensus       175 ~~vvIiGgG~iG~E~A~~l~~~-G~~Vtlv~~~~~il~~--------------------------------------~d~  215 (471)
T PRK06467        175 KRLLVMGGGIIGLEMGTVYHRL-GSEVDVVEMFDQVIPA--------------------------------------ADK  215 (471)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCCEEEEecCCCCCCc--------------------------------------CCH
Confidence            4799999999999999999999 9999999988642110                                      013


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      ++.+.+.+.+. +. ++++.++.++.+..+++.+. +...+      .    .++..++.+|.||+|+|....
T Consensus       216 ~~~~~~~~~l~-~~-v~i~~~~~v~~i~~~~~~~~-v~~~~------~----~~~~~~i~~D~vi~a~G~~pn  275 (471)
T PRK06467        216 DIVKVFTKRIK-KQ-FNIMLETKVTAVEAKEDGIY-VTMEG------K----KAPAEPQRYDAVLVAVGRVPN  275 (471)
T ss_pred             HHHHHHHHHHh-hc-eEEEcCCEEEEEEEcCCEEE-EEEEe------C----CCcceEEEeCEEEEeeccccc
Confidence            33444555554 44 99999999999986655443 32221      0    012357999999999996553

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=97.88  E-value=0.00015  Score=70.52  Aligned_cols=162  Identities=20%  Similarity=0.226  Sum_probs=96.2

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCC------------CCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCcc
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNP------------NIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYD  158 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~------------G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~  158 (356)
                      -+++|||||+.|...|-+|+..-            ..+|+|+|+++.+--                              
T Consensus       156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp------------------------------  205 (405)
T COG1252         156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILP------------------------------  205 (405)
T ss_pred             eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhcc------------------------------
Confidence            47999999999999999887520            248999998864321                              


Q ss_pred             ccCCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCe-EEEcCEEEEc
Q 018414          159 EQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPN-VMEAKVVVSS  237 (356)
Q Consensus       159 ~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~-~i~Ak~VI~A  237 (356)
                              .....+.....+. .++.||+++.++.|+++..+     +|.+.+              +. +|.++.+|.|
T Consensus       206 --------~~~~~l~~~a~~~-L~~~GV~v~l~~~Vt~v~~~-----~v~~~~--------------g~~~I~~~tvvWa  257 (405)
T COG1252         206 --------MFPPKLSKYAERA-LEKLGVEVLLGTPVTEVTPD-----GVTLKD--------------GEEEIPADTVVWA  257 (405)
T ss_pred             --------CCCHHHHHHHHHH-HHHCCCEEEcCCceEEECCC-----cEEEcc--------------CCeeEecCEEEEc
Confidence                    0113333333333 34789999999999998532     234431              12 6999999999


Q ss_pred             CCCCCCCCCccchhhhccCcccccccccccccccccceeeeccc--cccCceeEeceEEEEecCCcccCCccce-eeeeh
Q 018414          238 CGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTR--EVVPGMIVTGMEVAEIDGAPRMGPTFGA-MMISG  314 (356)
Q Consensus       238 tGg~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--e~~~g~~~~~~~~~~~~g~~~~~~~~g~-~l~sG  314 (356)
                      +|-.++.-   .+.+  .+.          ..+.....++.-.-  .-.+.+|+.|....+.+.  +..|.... ..-.|
T Consensus       258 aGv~a~~~---~~~l--~~~----------e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~--~p~P~tAQ~A~Qqg  320 (405)
T COG1252         258 AGVRASPL---LKDL--SGL----------ETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDP--RPVPPTAQAAHQQG  320 (405)
T ss_pred             CCCcCChh---hhhc--Chh----------hhccCCCEEeCCCcccCCCCCeEEEeccccCCCC--CCCCChhHHHHHHH
Confidence            99766422   1111  011          01111111110000  012678888877766654  33333322 22578


Q ss_pred             HHHHHHHHHHhCC
Q 018414          315 QKAAHLALKSLGQ  327 (356)
Q Consensus       315 ~~~~~l~l~~~~~  327 (356)
                      ..+++.+.+++..
T Consensus       321 ~~~a~ni~~~l~g  333 (405)
T COG1252         321 EYAAKNIKARLKG  333 (405)
T ss_pred             HHHHHHHHHHhcC
Confidence            8889999999866

>TIGR02731 phytoene_desat phytoene desaturase

Probab=97.88  E-value=1.5e-05  Score=79.42  Aligned_cols=38  Identities=37%  Similarity=0.522  Sum_probs=35.2

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~  130 (356)
                      +|+|||||++||++|+.|+++ |++|+|+|+.+.+||.+
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~-G~~v~vlE~~~~~GG~~   38 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADA-GHTPIVLEARDVLGGKV   38 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCCCCCc
Confidence            489999999999999999999 99999999999888754

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=97.87  E-value=0.00014  Score=73.73  Aligned_cols=98  Identities=19%  Similarity=0.299  Sum_probs=72.8

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -+|+|||||..|+.+|..|+.. +.+|+|+++.+.+..                                         .
T Consensus       352 k~VvVVGgG~~g~e~A~~L~~~-~~~Vtlv~~~~~l~~-----------------------------------------~  389 (517)
T PRK15317        352 KRVAVIGGGNSGVEAAIDLAGI-VKHVTVLEFAPELKA-----------------------------------------D  389 (517)
T ss_pred             CEEEEECCCHHHHHHHHHHHhc-CCEEEEEEECccccc-----------------------------------------c
Confidence            4899999999999999999998 999999998753210                                         0


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                         ..+.+.+.+..|+++++++.++++..+++++.++...+      ..   +++..++.+|.|++|.|...
T Consensus       390 ---~~l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~------~~---~g~~~~i~~D~v~~~~G~~p  449 (517)
T PRK15317        390 ---QVLQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKD------RT---TGEEHHLELEGVFVQIGLVP  449 (517)
T ss_pred             ---HHHHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEE------CC---CCcEEEEEcCEEEEeECCcc
Confidence               11233344346999999999999987767777776542      11   12346799999999999654

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=97.87  E-value=1.3e-05  Score=79.97  Aligned_cols=39  Identities=33%  Similarity=0.562  Sum_probs=34.8

Q ss_pred             cEEEECCCHHHHHHHHHhhcC-----CCCeEEEEeccCCCCCcc
Q 018414           92 DVVVVGAGSAGLSCAYELSKN-----PNIQIAIIEQSVSPGGGA  130 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~-----~G~~V~llEk~~~~Gg~~  130 (356)
                      +|+|||||++||+||+.|++.     .+.+|+|+|+.+.+||.+
T Consensus         3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~   46 (463)
T PRK12416          3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKI   46 (463)
T ss_pred             eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceE
Confidence            699999999999999999985     147999999999998765

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=97.86  E-value=0.00023  Score=71.53  Aligned_cols=99  Identities=11%  Similarity=0.138  Sum_probs=69.9

Q ss_pred             ccEEEECCCHHHHHHHHHh---hcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEe
Q 018414           91 TDVVVVGAGSAGLSCAYEL---SKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIK  167 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~L---a~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~  167 (356)
                      -.|+|||||..|+.+|..+   .+. |.+|+|+|+.+.+...                                      
T Consensus       188 ~~vvIIGgG~iG~E~A~~~~~l~~~-G~~Vtli~~~~~il~~--------------------------------------  228 (486)
T TIGR01423       188 RRVLTVGGGFISVEFAGIFNAYKPR-GGKVTLCYRNNMILRG--------------------------------------  228 (486)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhccC-CCeEEEEecCCccccc--------------------------------------
Confidence            4799999999999999654   345 8999999987643110                                      


Q ss_pred             chHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          168 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       168 ~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      ...++.+.+.+.+. +.|+++++++.++++..+++....+...+              ..++.+|.||+|+|....
T Consensus       229 ~d~~~~~~l~~~L~-~~GI~i~~~~~v~~i~~~~~~~~~v~~~~--------------g~~i~~D~vl~a~G~~Pn  289 (486)
T TIGR01423       229 FDSTLRKELTKQLR-ANGINIMTNENPAKVTLNADGSKHVTFES--------------GKTLDVDVVMMAIGRVPR  289 (486)
T ss_pred             cCHHHHHHHHHHHH-HcCCEEEcCCEEEEEEEcCCceEEEEEcC--------------CCEEEcCEEEEeeCCCcC
Confidence            01344455566665 67999999999999976544333343321              257999999999996543

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK13748 putative mercuric reductase; Provisional

Probab=97.85  E-value=0.00022  Score=73.00  Aligned_cols=96  Identities=11%  Similarity=0.186  Sum_probs=69.4

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.++|||+|..|+.+|..|++. |.+|+|+++......                                       ...
T Consensus       271 ~~vvViGgG~ig~E~A~~l~~~-g~~Vtli~~~~~l~~---------------------------------------~d~  310 (561)
T PRK13748        271 ERLAVIGSSVVALELAQAFARL-GSKVTILARSTLFFR---------------------------------------EDP  310 (561)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCEEEEEecCccccc---------------------------------------cCH
Confidence            4799999999999999999999 999999997531100                                       012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      ++...+.+.+. +.|+++++++.++++..+++.+. +...               ..++.+|.||+|+|....
T Consensus       311 ~~~~~l~~~l~-~~gI~i~~~~~v~~i~~~~~~~~-v~~~---------------~~~i~~D~vi~a~G~~pn  366 (561)
T PRK13748        311 AIGEAVTAAFR-AEGIEVLEHTQASQVAHVDGEFV-LTTG---------------HGELRADKLLVATGRAPN  366 (561)
T ss_pred             HHHHHHHHHHH-HCCCEEEcCCEEEEEEecCCEEE-EEec---------------CCeEEeCEEEEccCCCcC
Confidence            33344455554 67999999999999987665432 2221               135899999999996543

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=97.83  E-value=1.8e-05  Score=77.95  Aligned_cols=38  Identities=37%  Similarity=0.615  Sum_probs=36.2

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~  130 (356)
                      .|+|+|||.|||+||++|+++ |++|+|+|+++.+||.+
T Consensus         2 rVai~GaG~AgL~~a~~La~~-g~~vt~~ea~~~~GGk~   39 (485)
T COG3349           2 RVAIAGAGLAGLAAAYELADA-GYDVTLYEARDRLGGKV   39 (485)
T ss_pred             eEEEEcccHHHHHHHHHHHhC-CCceEEEeccCccCcee
Confidence            599999999999999999999 99999999999999875

>PRK07846 mycothione reductase; Reviewed

Probab=97.82  E-value=0.00023  Score=70.90  Aligned_cols=97  Identities=15%  Similarity=0.158  Sum_probs=68.6

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -+++|||+|..|+.+|..|++. |.+|+|+|+.+.+...                                      ...
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~~-G~~Vtli~~~~~ll~~--------------------------------------~d~  207 (451)
T PRK07846        167 ESLVIVGGGFIAAEFAHVFSAL-GVRVTVVNRSGRLLRH--------------------------------------LDD  207 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCccccc--------------------------------------cCH
Confidence            4899999999999999999999 9999999987542100                                      012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      ++.+.+. ++. +.+++++++++++++..+++.+. +...              +..++.+|.||+|+|....
T Consensus       208 ~~~~~l~-~l~-~~~v~i~~~~~v~~i~~~~~~v~-v~~~--------------~g~~i~~D~vl~a~G~~pn  263 (451)
T PRK07846        208 DISERFT-ELA-SKRWDVRLGRNVVGVSQDGSGVT-LRLD--------------DGSTVEADVLLVATGRVPN  263 (451)
T ss_pred             HHHHHHH-HHH-hcCeEEEeCCEEEEEEEcCCEEE-EEEC--------------CCcEeecCEEEEEECCccC
Confidence            2223332 333 35799999999999976655432 3322              1357999999999996543

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=97.82  E-value=0.00017  Score=76.62  Aligned_cols=98  Identities=13%  Similarity=0.202  Sum_probs=70.2

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.++|||||..|+.+|..|++. |.+|+|+|+.+.+-..                   .                .  ..
T Consensus       141 k~vvVVGgG~~GlE~A~~L~~~-G~~Vtvv~~~~~ll~~-------------------~----------------l--d~  182 (785)
T TIGR02374       141 KKAAVIGGGLLGLEAAVGLQNL-GMDVSVIHHAPGLMAK-------------------Q----------------L--DQ  182 (785)
T ss_pred             CeEEEECCCHHHHHHHHHHHhc-CCeEEEEccCCchhhh-------------------h----------------c--CH
Confidence            4799999999999999999999 9999999987532100                   0                0  01


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      .....+.+.+. +.||++++++.++++..+ +++.++...+              +.++.+|.||+|+|...
T Consensus       183 ~~~~~l~~~l~-~~GV~v~~~~~v~~i~~~-~~~~~v~~~d--------------G~~i~~D~Vi~a~G~~P  238 (785)
T TIGR02374       183 TAGRLLQRELE-QKGLTFLLEKDTVEIVGA-TKADRIRFKD--------------GSSLEADLIVMAAGIRP  238 (785)
T ss_pred             HHHHHHHHHHH-HcCCEEEeCCceEEEEcC-CceEEEEECC--------------CCEEEcCEEEECCCCCc
Confidence            22233344443 679999999999888643 4455565542              35799999999999654

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=97.80  E-value=0.00033  Score=71.04  Aligned_cols=65  Identities=23%  Similarity=0.318  Sum_probs=50.3

Q ss_pred             chHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          168 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       168 ~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      +...+...+.+.+. +.|++++++++|+++..+++++.+|.+.+      ..   +++..+++|+.||+|+|.++
T Consensus       126 dp~~l~~al~~~A~-~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~------~~---~g~~~~i~a~~VVnAaG~wa  190 (516)
T TIGR03377       126 DPFRLVAANVLDAQ-EHGARIFTYTKVTGLIREGGRVTGVKVED------HK---TGEEERIEAQVVINAAGIWA  190 (516)
T ss_pred             CHHHHHHHHHHHHH-HcCCEEEcCcEEEEEEEECCEEEEEEEEE------cC---CCcEEEEEcCEEEECCCcch
Confidence            45667777777776 67999999999999999888888887642      00   12346799999999999776

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PTZ00058 glutathione reductase; Provisional

Probab=97.80  E-value=0.0003  Score=71.85  Aligned_cols=98  Identities=8%  Similarity=0.104  Sum_probs=70.0

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.|+|||+|..|+..|..+++. |.+|+|+|+.+.+..                                      ....
T Consensus       238 k~VvIIGgG~iGlE~A~~l~~~-G~~Vtli~~~~~il~--------------------------------------~~d~  278 (561)
T PTZ00058        238 KRIGIAGSGYIAVELINVVNRL-GAESYIFARGNRLLR--------------------------------------KFDE  278 (561)
T ss_pred             CEEEEECCcHHHHHHHHHHHHc-CCcEEEEEecccccc--------------------------------------cCCH
Confidence            4799999999999999999999 999999998753210                                      0013


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCC-eEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG-RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~-~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      ++.+.+.+.+. +.|++++.++.+.++..+++ .+. +...+             +..++.+|.||+|+|...
T Consensus       279 ~i~~~l~~~L~-~~GV~i~~~~~V~~I~~~~~~~v~-v~~~~-------------~~~~i~aD~VlvA~Gr~P  336 (561)
T PTZ00058        279 TIINELENDMK-KNNINIITHANVEEIEKVKEKNLT-IYLSD-------------GRKYEHFDYVIYCVGRSP  336 (561)
T ss_pred             HHHHHHHHHHH-HCCCEEEeCCEEEEEEecCCCcEE-EEECC-------------CCEEEECCEEEECcCCCC
Confidence            33444555554 67999999999999976533 332 22111             135799999999999554

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=97.79  E-value=2.4e-05  Score=77.52  Aligned_cols=73  Identities=29%  Similarity=0.370  Sum_probs=53.8

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      ..|.|||+||+||.+|..|++. |+.|+++|+...+||-...                     |++-        +.-..
T Consensus       124 ~~VaviGaGPAGl~~a~~L~~~-G~~Vtv~e~~~~~GGll~y---------------------GIP~--------~kl~k  173 (457)
T COG0493         124 KKVAVIGAGPAGLAAADDLSRA-GHDVTVFERVALDGGLLLY---------------------GIPD--------FKLPK  173 (457)
T ss_pred             CEEEEECCCchHhhhHHHHHhC-CCeEEEeCCcCCCceeEEe---------------------cCch--------hhccc
Confidence            5899999999999999999999 9999999999888763321                     2111        11124


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEE
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAA  194 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v  194 (356)
                      ++.+..++.+. +.|++|+.++++
T Consensus       174 ~i~d~~i~~l~-~~Gv~~~~~~~v  196 (457)
T COG0493         174 DILDRRLELLE-RSGVEFKLNVRV  196 (457)
T ss_pred             hHHHHHHHHHH-HcCeEEEEcceE
Confidence            45555566665 567999998755

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=97.77  E-value=0.0001  Score=71.57  Aligned_cols=207  Identities=18%  Similarity=0.294  Sum_probs=111.8

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCC-CCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNP-NIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~-G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~  169 (356)
                      ..|||||||.+|+.+|..|.+++ +.+|++||++...-         +..++.+      +.. |           ..+.
T Consensus         4 ~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl---------~~plL~e------va~-g-----------~l~~   56 (405)
T COG1252           4 KRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHL---------FTPLLYE------VAT-G-----------TLSE   56 (405)
T ss_pred             ceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccc---------cchhhhh------hhc-C-----------CCCh
Confidence            57999999999999999999972 48999999987421         1111100      000 0           0011


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCC-CCcc
Q 018414          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF-GATG  248 (356)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~-~~~~  248 (356)
                      ......+.+-+....+++++.+ +|++|..++.+|.   +.              +...+..|++|+|.|+.... +.+|
T Consensus        57 ~~i~~p~~~~~~~~~~v~~~~~-~V~~ID~~~k~V~---~~--------------~~~~i~YD~LVvalGs~~~~fgi~G  118 (405)
T COG1252          57 SEIAIPLRALLRKSGNVQFVQG-EVTDIDRDAKKVT---LA--------------DLGEISYDYLVVALGSETNYFGIPG  118 (405)
T ss_pred             hheeccHHHHhcccCceEEEEE-EEEEEcccCCEEE---eC--------------CCccccccEEEEecCCcCCcCCCCC
Confidence            2222222333332445999888 8999998887653   32              13669999999999976522 2233


Q ss_pred             chhhhc-cCc-ccccccc-------ccccccccc-c---eee--------ecccc-------ccC--ceeEeceEEEEec
Q 018414          249 VKRLKS-IGM-IEEVPGM-------KALDMNSAE-D---AIV--------RLTRE-------VVP--GMIVTGMEVAEID  298 (356)
Q Consensus       249 ~~~~~~-~g~-~~~~~~~-------~~~~~~~~~-~---~~~--------~~~~e-------~~~--g~~~~~~~~~~~~  298 (356)
                      .....- +.- .+.....       ......... .   .++        ++..|       ...  ........+.+++
T Consensus       119 ~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVe  198 (405)
T COG1252         119 AAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVE  198 (405)
T ss_pred             HHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEc
Confidence            222110 000 0000000       000000000 0   011        00000       000  0111134778888


Q ss_pred             CCcccCCccceeeeehHHHHHHHHHHhCCCCCCCCcccccCCchhhhh
Q 018414          299 GAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILA  346 (356)
Q Consensus       299 g~~~~~~~~g~~l~sG~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~  346 (356)
                      ..+++.|.|.+-+   ...++..|++++.....+..| ..+.|+-|..
T Consensus       199 a~p~ILp~~~~~l---~~~a~~~L~~~GV~v~l~~~V-t~v~~~~v~~  242 (405)
T COG1252         199 AGPRILPMFPPKL---SKYAERALEKLGVEVLLGTPV-TEVTPDGVTL  242 (405)
T ss_pred             cCchhccCCCHHH---HHHHHHHHHHCCCEEEcCCce-EEECCCcEEE
Confidence            8889888887776   667888888888887766664 2455554443

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=97.75  E-value=0.00035  Score=65.04  Aligned_cols=97  Identities=16%  Similarity=0.310  Sum_probs=68.5

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      ..|+|||+|..|+-+|..|++. +.+|+++++.+...                                        .  
T Consensus       142 ~~v~ViG~G~~~~e~a~~l~~~-~~~V~~v~~~~~~~----------------------------------------~--  178 (300)
T TIGR01292       142 KEVAVVGGGDSAIEEALYLTRI-AKKVTLVHRRDKFR----------------------------------------A--  178 (300)
T ss_pred             CEEEEECCChHHHHHHHHHHhh-cCEEEEEEeCcccC----------------------------------------c--
Confidence            4899999999999999999998 99999999864210                                        0  


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                        ...+.+.+.+..|++++++++++++..++ ++..+...+      ..   .++..++.+|.||+|+|...
T Consensus       179 --~~~~~~~l~~~~gv~~~~~~~v~~i~~~~-~~~~v~~~~------~~---~g~~~~i~~D~vi~a~G~~~  238 (300)
T TIGR01292       179 --EKILLDRLRKNPNIEFLWNSTVKEIVGDN-KVEGVKIKN------TV---TGEEEELKVDGVFIAIGHEP  238 (300)
T ss_pred             --CHHHHHHHHhCCCeEEEeccEEEEEEccC-cEEEEEEEe------cC---CCceEEEEccEEEEeeCCCC
Confidence              01223344433499999999999997544 555554421      01   12347899999999999543

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=97.74  E-value=0.00028  Score=70.06  Aligned_cols=93  Identities=17%  Similarity=0.195  Sum_probs=67.2

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.++|||||..|+.+|..|++. |.+|+|+++.+.+...                                      ...
T Consensus       149 ~~vvViGgG~ig~E~A~~l~~~-g~~Vtli~~~~~l~~~--------------------------------------~d~  189 (438)
T PRK13512        149 DKALVVGAGYISLEVLENLYER-GLHPTLIHRSDKINKL--------------------------------------MDA  189 (438)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCcEEEEecccccchh--------------------------------------cCH
Confidence            4799999999999999999999 9999999987542110                                      012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      ++...+.+.+. +.|++++++++++++.  +.   .+...+              ...+.+|.||+|+|...
T Consensus       190 ~~~~~l~~~l~-~~gI~i~~~~~v~~i~--~~---~v~~~~--------------g~~~~~D~vl~a~G~~p  241 (438)
T PRK13512        190 DMNQPILDELD-KREIPYRLNEEIDAIN--GN---EVTFKS--------------GKVEHYDMIIEGVGTHP  241 (438)
T ss_pred             HHHHHHHHHHH-hcCCEEEECCeEEEEe--CC---EEEECC--------------CCEEEeCEEEECcCCCc
Confidence            33344455554 6799999999999884  22   233321              24689999999999554

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=97.73  E-value=0.00053  Score=68.27  Aligned_cols=107  Identities=16%  Similarity=0.168  Sum_probs=70.4

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.|+|||||..|+-+|..|.+. |.+|+++++.....   +                                .  ..  
T Consensus       273 k~VvVIGgG~~a~d~A~~l~~~-G~~Vtlv~~~~~~~---~--------------------------------~--~~--  312 (449)
T TIGR01316       273 KSVVVIGGGNTAVDSARTALRL-GAEVHCLYRRTRED---M--------------------------------T--AR--  312 (449)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCEEEEEeecCccc---C--------------------------------C--CC--
Confidence            4799999999999999999999 99999999874210   0                                0  00  


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEe-CCeEEEEEEcceeeecccCCCC------CCCCeEEEcCEEEEcCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQS------CMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~-~~~v~gv~~~~~~~~~~~~~~~------~g~~~~i~Ak~VI~AtGg~  241 (356)
                         ...++.+. +.||++++++.++++..+ ++++.++.+..........++.      .++..++.+|.||+|.|-.
T Consensus       313 ---~~~~~~l~-~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~  386 (449)
T TIGR01316       313 ---VEEIAHAE-EEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNG  386 (449)
T ss_pred             ---HHHHHHHH-hCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCC
Confidence               11123343 579999999999998764 5677777653100000000000      1234579999999999943

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PTZ00052 thioredoxin reductase; Provisional

Probab=97.72  E-value=0.00047  Score=69.60  Aligned_cols=97  Identities=12%  Similarity=0.155  Sum_probs=68.6

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -+++|||+|..|+..|..|++. |.+|+|+++.....  .                                     ...
T Consensus       183 ~~vvIIGgG~iG~E~A~~l~~~-G~~Vtli~~~~~l~--~-------------------------------------~d~  222 (499)
T PTZ00052        183 GKTLIVGASYIGLETAGFLNEL-GFDVTVAVRSIPLR--G-------------------------------------FDR  222 (499)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCcEEEEEcCcccc--c-------------------------------------CCH
Confidence            3799999999999999999999 99999998642110  0                                     012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      ++.+.+.+.+. +.|++++.++.+.++...++.+. +...+              ..++.+|.||+|+|....
T Consensus       223 ~~~~~l~~~l~-~~GV~i~~~~~v~~v~~~~~~~~-v~~~~--------------g~~i~~D~vl~a~G~~pn  279 (499)
T PTZ00052        223 QCSEKVVEYMK-EQGTLFLEGVVPINIEKMDDKIK-VLFSD--------------GTTELFDTVLYATGRKPD  279 (499)
T ss_pred             HHHHHHHHHHH-HcCCEEEcCCeEEEEEEcCCeEE-EEECC--------------CCEEEcCEEEEeeCCCCC
Confidence            23344555554 67999999999988876554332 33321              246889999999996543

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.72  E-value=0.00043  Score=69.59  Aligned_cols=99  Identities=17%  Similarity=0.147  Sum_probs=69.0

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechHH
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAAL  171 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~  171 (356)
                      .++|||||..|+.+|..|++. |.+|+|+++.. +-.                                      ....+
T Consensus       182 ~vvIIGgG~iG~E~A~~l~~~-G~~Vtli~~~~-~l~--------------------------------------~~d~~  221 (484)
T TIGR01438       182 KTLVVGASYVALECAGFLAGI-GLDVTVMVRSI-LLR--------------------------------------GFDQD  221 (484)
T ss_pred             CEEEECCCHHHHHHHHHHHHh-CCcEEEEEecc-ccc--------------------------------------ccCHH
Confidence            699999999999999999999 99999998742 110                                      00133


Q ss_pred             HHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          172 FTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       172 ~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      +.+.+.+.+. +.|+++++++.++++...++.+. +...+       .    .+..++.+|.||+|+|....
T Consensus       222 ~~~~l~~~L~-~~gV~i~~~~~v~~v~~~~~~~~-v~~~~-------~----~~~~~i~~D~vl~a~G~~pn  280 (484)
T TIGR01438       222 CANKVGEHME-EHGVKFKRQFVPIKVEQIEAKVK-VTFTD-------S----TNGIEEEYDTVLLAIGRDAC  280 (484)
T ss_pred             HHHHHHHHHH-HcCCEEEeCceEEEEEEcCCeEE-EEEec-------C----CcceEEEeCEEEEEecCCcC
Confidence            3444555554 67999999999988876555432 33221       0    01247999999999996543

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=97.70  E-value=0.00059  Score=68.05  Aligned_cols=99  Identities=16%  Similarity=0.199  Sum_probs=69.6

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.++|||+|..|+..|..|++. |.+|+++|+.+.+...                                      ...
T Consensus       170 k~v~VIGgG~~g~E~A~~l~~~-g~~Vtli~~~~~~l~~--------------------------------------~d~  210 (460)
T PRK06292        170 KSLAVIGGGVIGLELGQALSRL-GVKVTVFERGDRILPL--------------------------------------EDP  210 (460)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCcCcc--------------------------------------hhH
Confidence            4799999999999999999999 9999999987643210                                      012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCC-eEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG-RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~-~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      ++...+.+.+. +. ++++++++++++..+++ .+. +...+            ++..++.+|.||+|+|....
T Consensus       211 ~~~~~~~~~l~-~~-I~i~~~~~v~~i~~~~~~~v~-~~~~~------------~~~~~i~~D~vi~a~G~~p~  269 (460)
T PRK06292        211 EVSKQAQKILS-KE-FKIKLGAKVTSVEKSGDEKVE-ELEKG------------GKTETIEADYVLVATGRRPN  269 (460)
T ss_pred             HHHHHHHHHHh-hc-cEEEcCCEEEEEEEcCCceEE-EEEcC------------CceEEEEeCEEEEccCCccC
Confidence            33444455554 55 99999999999976544 222 11111            12467999999999996543

>TIGR03452 mycothione_red mycothione reductase

Probab=97.70  E-value=0.00049  Score=68.59  Aligned_cols=97  Identities=14%  Similarity=0.168  Sum_probs=68.2

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.++|||+|..|+..|..|++. |.+|+++|+.+.+...                                      ...
T Consensus       170 k~vvVIGgG~ig~E~A~~l~~~-G~~Vtli~~~~~ll~~--------------------------------------~d~  210 (452)
T TIGR03452       170 ESLVIVGGGYIAAEFAHVFSAL-GTRVTIVNRSTKLLRH--------------------------------------LDE  210 (452)
T ss_pred             CcEEEECCCHHHHHHHHHHHhC-CCcEEEEEccCccccc--------------------------------------cCH
Confidence            4799999999999999999999 9999999987532100                                      002


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      ++...+.+ +. +.++++++++.++++..+++.+. +...              +..++.+|.||+|+|....
T Consensus       211 ~~~~~l~~-~~-~~gI~i~~~~~V~~i~~~~~~v~-v~~~--------------~g~~i~~D~vl~a~G~~pn  266 (452)
T TIGR03452       211 DISDRFTE-IA-KKKWDIRLGRNVTAVEQDGDGVT-LTLD--------------DGSTVTADVLLVATGRVPN  266 (452)
T ss_pred             HHHHHHHH-HH-hcCCEEEeCCEEEEEEEcCCeEE-EEEc--------------CCCEEEcCEEEEeeccCcC
Confidence            22223332 33 34799999999999987665432 3322              1247999999999996543

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=97.69  E-value=8.5e-05  Score=70.28  Aligned_cols=39  Identities=38%  Similarity=0.592  Sum_probs=34.2

Q ss_pred             cccEEEECCCHHHHHHHHHhhc-CCCCeEEEEeccCCCCC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSK-NPNIQIAIIEQSVSPGG  128 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~-~~G~~V~llEk~~~~Gg  128 (356)
                      ...|+|||+||||+.+|..|-+ .++.+|.|+||.+.+.|
T Consensus        20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFG   59 (468)
T KOG1800|consen   20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFG   59 (468)
T ss_pred             CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccc
Confidence            3589999999999999999888 45899999999987765

>PLN02529 lysine-specific histone demethylase 1

Probab=97.67  E-value=5e-05  Score=79.34  Aligned_cols=40  Identities=35%  Similarity=0.636  Sum_probs=36.7

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~  130 (356)
                      ..||+|||||++|++||+.|+++ |++|+|+|+...+||..
T Consensus       160 ~~~v~viGaG~aGl~aA~~l~~~-g~~v~v~E~~~~~GG~~  199 (738)
T PLN02529        160 EGSVIIVGAGLAGLAAARQLLSF-GFKVVVLEGRNRPGGRV  199 (738)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHc-CCcEEEEecCccCcCce
Confidence            57999999999999999999999 99999999988877654

>PLN02546 glutathione reductase

Probab=97.66  E-value=0.00071  Score=69.09  Aligned_cols=99  Identities=12%  Similarity=0.128  Sum_probs=68.0

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -+|+|||||..|+..|..|++. |.+|+|+|+.+.+...                                      ...
T Consensus       253 k~V~VIGgG~iGvE~A~~L~~~-g~~Vtlv~~~~~il~~--------------------------------------~d~  293 (558)
T PLN02546        253 EKIAIVGGGYIALEFAGIFNGL-KSDVHVFIRQKKVLRG--------------------------------------FDE  293 (558)
T ss_pred             CeEEEECCCHHHHHHHHHHHhc-CCeEEEEEeccccccc--------------------------------------cCH
Confidence            4799999999999999999998 9999999987542110                                      012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      ++...+.+.+. +.||+++.++.++++..+++....+...              +.....+|.||+|+|....
T Consensus       294 ~~~~~l~~~L~-~~GV~i~~~~~v~~i~~~~~g~v~v~~~--------------~g~~~~~D~Viva~G~~Pn  351 (558)
T PLN02546        294 EVRDFVAEQMS-LRGIEFHTEESPQAIIKSADGSLSLKTN--------------KGTVEGFSHVMFATGRKPN  351 (558)
T ss_pred             HHHHHHHHHHH-HCCcEEEeCCEEEEEEEcCCCEEEEEEC--------------CeEEEecCEEEEeeccccC
Confidence            33344455554 6799999999999997643332223321              1233448999999996543

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=97.65  E-value=0.0006  Score=67.15  Aligned_cols=39  Identities=26%  Similarity=0.395  Sum_probs=31.7

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG  129 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~  129 (356)
                      +|||||+|.|..-+..|..|++. |++|+-+|+++.-||.
T Consensus         4 ~yDviI~GTGl~esila~als~~-GkkVLhiD~n~yYGg~   42 (438)
T PF00996_consen    4 EYDVIILGTGLTESILAAALSRS-GKKVLHIDRNDYYGGE   42 (438)
T ss_dssp             BESEEEE--SHHHHHHHHHHHHT-T--EEEE-SSSSSCGG
T ss_pred             cceEEEECCCcHHHHHHHHHHhc-CCEEEecCCCCCcCCc
Confidence            69999999999999999999999 9999999999988754

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=97.63  E-value=0.00029  Score=65.62  Aligned_cols=105  Identities=19%  Similarity=0.271  Sum_probs=63.8

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhcc----------c--hHHHHHHHhCCCcc
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVR----------K--PAHIFLDELGIDYD  158 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~----------~--~~~~~l~~~G~~~~  158 (356)
                      ..|.|||||.||..+||+++++ |++|.|.|-.+.-+.-....+. +..+++.          .  -....+..+|--.-
T Consensus         4 ~~i~VIGaGLAGSEAAwqiA~~-Gv~V~L~EMRp~k~TpaH~td~-fAELVCSNSlr~~~~~navGlLk~EMR~lgSlii   81 (439)
T COG1206           4 QPINVIGAGLAGSEAAWQIAKR-GVPVILYEMRPVKGTPAHKTDN-FAELVCSNSLRSDALTNAVGLLKAEMRLLGSLII   81 (439)
T ss_pred             CceEEEcccccccHHHHHHHHc-CCcEEEEEcccccCCCcccccc-hhhheeccccccchhhhhhHHHHHHHHHhhhHHh
Confidence            4689999999999999999999 9999999977533211111111 1111111          0  01233333332111


Q ss_pred             c-------cCCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEE
Q 018414          159 E-------QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLI  198 (356)
Q Consensus       159 ~-------~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~  198 (356)
                      .       ..+..+..+...|.+.+.+.+.+.+.|+++.+ +|++|-
T Consensus        82 ~~Ad~~~VPAGgALAVDR~~Fs~~vT~~l~~hpli~vire-Evt~iP  127 (439)
T COG1206          82 EAADKHRVPAGGALAVDRDGFSQAVTEKLENHPLIEVIRE-EVTEIP  127 (439)
T ss_pred             hhhhhccCCCCceeeecHhHHHHHHHHHHhcCCCEEEEcc-ccccCC
Confidence            1       01223344567788888888888889998877 666663

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=97.63  E-value=0.00068  Score=70.42  Aligned_cols=108  Identities=14%  Similarity=-0.006  Sum_probs=70.3

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.|+|||||..|+..|..|++. |.+|+|+|+.+.+...                                      ...
T Consensus       313 k~VvIVGgG~iGvE~A~~l~~~-G~eVTLIe~~~~ll~~--------------------------------------~d~  353 (659)
T PTZ00153        313 NYMGIVGMGIIGLEFMDIYTAL-GSEVVSFEYSPQLLPL--------------------------------------LDA  353 (659)
T ss_pred             CceEEECCCHHHHHHHHHHHhC-CCeEEEEeccCccccc--------------------------------------CCH
Confidence            4799999999999999999999 9999999998643210                                      012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCe-EEEEEEcceeeecccCCCC-CC------CCeEEEcCEEEEcCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGR-VGGVVTNWALVSMNHDTQS-CM------DPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~-v~gv~~~~~~~~~~~~~~~-~g------~~~~i~Ak~VI~AtGg~~  242 (356)
                      ++...+.+.+.++.||+++.++.|+++..+++. ...+...+      ..++. .+      +..++.+|.||+|+|...
T Consensus       354 eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~------~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~P  427 (659)
T PTZ00153        354 DVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSE------RQTGESDGPKKNMNDIKETYVDSCLVATGRKP  427 (659)
T ss_pred             HHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEec------cccccccccccccccceEEEcCEEEEEECccc
Confidence            233334444434679999999999999765432 11122110      00000 00      124799999999999654


Q ss_pred             C
Q 018414          243 P  243 (356)
Q Consensus       243 ~  243 (356)
                      .
T Consensus       428 n  428 (659)
T PTZ00153        428 N  428 (659)
T ss_pred             C
Confidence            3

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=97.62  E-value=0.00058  Score=66.35  Aligned_cols=59  Identities=15%  Similarity=0.136  Sum_probs=44.2

Q ss_pred             chHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          168 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       168 ~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      +...+...|.+.+. + |+++++++.|+++..+++++ .+.+..              ...++|+.||+|+|.++.
T Consensus       133 dp~~~~~~l~~~~~-~-G~~i~~~~~V~~i~~~~~~~-~v~t~~--------------g~~~~a~~vV~a~G~~~~  191 (381)
T TIGR03197       133 SPPQLCRALLAHAG-I-RLTLHFNTEITSLERDGEGW-QLLDAN--------------GEVIAASVVVLANGAQAG  191 (381)
T ss_pred             ChHHHHHHHHhccC-C-CcEEEeCCEEEEEEEcCCeE-EEEeCC--------------CCEEEcCEEEEcCCcccc
Confidence            44667777777765 5 99999999999998876653 354431              245899999999998764

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=97.62  E-value=6.2e-05  Score=75.47  Aligned_cols=37  Identities=43%  Similarity=0.560  Sum_probs=34.4

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG  129 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~  129 (356)
                      +|+|||||++|+++|+.|++. |++|+|+|+...+||.
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~-G~~v~v~E~~~~~GG~   37 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDA-GHEVDIYESRSFIGGK   37 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHC-CCcEEEEEecCCCCce
Confidence            489999999999999999999 9999999999888864

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=97.61  E-value=0.0013  Score=64.94  Aligned_cols=40  Identities=35%  Similarity=0.557  Sum_probs=34.9

Q ss_pred             ccEEEECCCHHHHHHHHHhhcC---CCCeEEEEeccCCCCCcc
Q 018414           91 TDVVVVGAGSAGLSCAYELSKN---PNIQIAIIEQSVSPGGGA  130 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~---~G~~V~llEk~~~~Gg~~  130 (356)
                      .++=|||+|+|+|++|..|-+.   ||.+|.|+|+...+||+.
T Consensus         3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsl   45 (500)
T PF06100_consen    3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSL   45 (500)
T ss_pred             ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcc
Confidence            4678999999999999999873   588999999998888654

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=97.61  E-value=7.1e-05  Score=78.71  Aligned_cols=40  Identities=40%  Similarity=0.650  Sum_probs=36.8

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~  130 (356)
                      ..+|+|||||++|+++|+.|++. |++|+|+|+...+||..
T Consensus       238 ~~~v~IiGaG~aGl~aA~~L~~~-g~~v~v~E~~~r~GGr~  277 (808)
T PLN02328        238 PANVVVVGAGLAGLVAARQLLSM-GFKVVVLEGRARPGGRV  277 (808)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC-CCcEEEEeccccCCCcc
Confidence            57899999999999999999999 99999999998887653

>PLN02487 zeta-carotene desaturase

Probab=97.58  E-value=9e-05  Score=75.62  Aligned_cols=37  Identities=38%  Similarity=0.537  Sum_probs=35.0

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG  128 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg  128 (356)
                      .+|+|||+|++|+++|+.|++. |++|+|+|+...+||
T Consensus        76 ~~v~iiG~G~~Gl~~a~~L~~~-g~~v~i~E~~~~~gG  112 (569)
T PLN02487         76 LKVAIIGAGLAGMSTAVELLDQ-GHEVDIYESRPFIGG  112 (569)
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-CCeeEEEecCCCCCC
Confidence            5899999999999999999999 999999999988875

>PRK12831 putative oxidoreductase; Provisional

Probab=97.56  E-value=0.0012  Score=65.93  Aligned_cols=107  Identities=15%  Similarity=0.135  Sum_probs=70.4

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.|+|||||..|+-+|..|.+. |.+|+++++.....   +.                                  ....
T Consensus       282 k~VvVIGgG~va~d~A~~l~r~-Ga~Vtlv~r~~~~~---m~----------------------------------a~~~  323 (464)
T PRK12831        282 KKVAVVGGGNVAMDAARTALRL-GAEVHIVYRRSEEE---LP----------------------------------ARVE  323 (464)
T ss_pred             CeEEEECCcHHHHHHHHHHHHc-CCEEEEEeecCccc---CC----------------------------------CCHH
Confidence            4899999999999999999999 99999998764210   00                                  0001


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEe-CCeEEEEEEcceee-ecccCCCC------CCCCeEEEcCEEEEcCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALV-SMNHDTQS------CMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~-~~~v~gv~~~~~~~-~~~~~~~~------~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      +     ++.+. +.|+++++++.++++..+ ++++.++.+..... ..+. ++.      .++..++.+|.||+|.|-..
T Consensus       324 e-----~~~a~-~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~-~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p  396 (464)
T PRK12831        324 E-----VHHAK-EEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDA-SGRRRPVEIEGSEFVLEVDTVIMSLGTSP  396 (464)
T ss_pred             H-----HHHHH-HcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCC-CCCccceecCCceEEEECCEEEECCCCCC
Confidence            1     12233 569999999999999764 56787776531100 0000 010      12345799999999999543

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=97.52  E-value=0.00097  Score=65.91  Aligned_cols=161  Identities=20%  Similarity=0.223  Sum_probs=92.8

Q ss_pred             cEEEECCCHHHHHHHHHhhcC-------------CCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCcc
Q 018414           92 DVVVVGAGSAGLSCAYELSKN-------------PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYD  158 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~-------------~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~  158 (356)
                      .++|||||+.|+..|..|++.             ++.+|+|+|+.+.+-..                             
T Consensus       175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~-----------------------------  225 (424)
T PTZ00318        175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGS-----------------------------  225 (424)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccccc-----------------------------
Confidence            799999999999999988751             27899999987542110                             


Q ss_pred             ccCCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcC
Q 018414          159 EQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSC  238 (356)
Q Consensus       159 ~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~At  238 (356)
                               ....+.+.+.+.+. +.||+++.+++++++..  +.   +.+.+              +.++.+|.||.|+
T Consensus       226 ---------~~~~~~~~~~~~L~-~~gV~v~~~~~v~~v~~--~~---v~~~~--------------g~~i~~d~vi~~~  276 (424)
T PTZ00318        226 ---------FDQALRKYGQRRLR-RLGVDIRTKTAVKEVLD--KE---VVLKD--------------GEVIPTGLVVWST  276 (424)
T ss_pred             ---------CCHHHHHHHHHHHH-HCCCEEEeCCeEEEEeC--CE---EEECC--------------CCEEEccEEEEcc
Confidence                     01223344455554 67999999999988852  32   33331              3579999999999


Q ss_pred             CCCCCCCCccchhhhccCcccccccccccccccccceeeeccccccCceeEeceEEEEecCCcccCCccce-eeeehHHH
Q 018414          239 GHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGA-MMISGQKA  317 (356)
Q Consensus       239 Gg~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~~~~~~~~~~g~~~~~~~~g~-~l~sG~~~  317 (356)
                      |.....      .+...++.  ......+.++  +..  ..  .=.+++|..|.......   ...+..+. ....|+.+
T Consensus       277 G~~~~~------~~~~~~l~--~~~~G~I~Vd--~~l--~~--~~~~~IfAiGD~a~~~~---~~~~~~~~~A~~qg~~~  339 (424)
T PTZ00318        277 GVGPGP------LTKQLKVD--KTSRGRISVD--DHL--RV--KPIPNVFALGDCAANEE---RPLPTLAQVASQQGVYL  339 (424)
T ss_pred             CCCCcc------hhhhcCCc--ccCCCcEEeC--CCc--cc--CCCCCEEEEeccccCCC---CCCCCchHHHHHHHHHH
Confidence            954321      12222220  0000011111  110  00  01377888776554321   11222222 23678889


Q ss_pred             HHHHHHHhCC
Q 018414          318 AHLALKSLGQ  327 (356)
Q Consensus       318 ~~l~l~~~~~  327 (356)
                      ++.+.+.+..
T Consensus       340 A~ni~~~l~g  349 (424)
T PTZ00318        340 AKEFNNELKG  349 (424)
T ss_pred             HHHHHHHhcC
Confidence            9999888853

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=97.46  E-value=0.0015  Score=63.70  Aligned_cols=101  Identities=19%  Similarity=0.184  Sum_probs=75.3

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~  169 (356)
                      .--|++||+|..|+.+|..|... +++|+++++.+.+-          ..+                           -.
T Consensus       213 ~~~vV~vG~G~ig~Evaa~l~~~-~~~VT~V~~e~~~~----------~~l---------------------------f~  254 (478)
T KOG1336|consen  213 GGKVVCVGGGFIGMEVAAALVSK-AKSVTVVFPEPWLL----------PRL---------------------------FG  254 (478)
T ss_pred             CceEEEECchHHHHHHHHHHHhc-CceEEEEccCccch----------hhh---------------------------hh
Confidence            45799999999999999999999 99999999875210          000                           01


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEe-CCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      ..+.+.+.+.+ ++.|++++.++.+..+... +|++.-|.+.+              ..++.||.||+.+|....
T Consensus       255 ~~i~~~~~~y~-e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~d--------------g~~l~adlvv~GiG~~p~  314 (478)
T KOG1336|consen  255 PSIGQFYEDYY-ENKGVKFYLGTVVSSLEGNSDGEVSEVKLKD--------------GKTLEADLVVVGIGIKPN  314 (478)
T ss_pred             HHHHHHHHHHH-HhcCeEEEEecceeecccCCCCcEEEEEecc--------------CCEeccCeEEEeeccccc
Confidence            22233333333 4789999999999999875 47888787753              578999999999996653

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=97.44  E-value=0.002  Score=64.34  Aligned_cols=108  Identities=16%  Similarity=0.171  Sum_probs=69.3

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~  169 (356)
                      -.|+|||+|..|+-+|..|.+. |. +|+++++.....   +.                                  .. 
T Consensus       274 ~~VvViGgG~~g~e~A~~l~~~-G~~~Vtlv~~~~~~~---~~----------------------------------~~-  314 (457)
T PRK11749        274 KRVVVIGGGNTAMDAARTAKRL-GAESVTIVYRRGREE---MP----------------------------------AS-  314 (457)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCCeEEEeeecCccc---CC----------------------------------CC-
Confidence            5799999999999999999998 77 899999864210   00                                  00 


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceee-ecccCCC----CCCCCeEEEcCEEEEcCCCCC
Q 018414          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALV-SMNHDTQ----SCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~-~~~~~~~----~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      .    ..++.+. +.||++++++.+.++..+++.+.++.+..... ..+.++.    ..++..++.+|.||+|.|...
T Consensus       315 ~----~~~~~~~-~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p  387 (457)
T PRK11749        315 E----EEVEHAK-EEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTP  387 (457)
T ss_pred             H----HHHHHHH-HCCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCC
Confidence            0    0123333 57999999999999886665555554421000 0000000    012346899999999999544

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=97.38  E-value=0.00077  Score=64.05  Aligned_cols=103  Identities=17%  Similarity=0.235  Sum_probs=75.1

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -..+|||+|..||..+.--.+. |.+|+++|-.+.+|+..                                      ..
T Consensus       212 k~~~viG~G~IGLE~gsV~~rL-GseVT~VEf~~~i~~~m--------------------------------------D~  252 (506)
T KOG1335|consen  212 KKLTVIGAGYIGLEMGSVWSRL-GSEVTVVEFLDQIGGVM--------------------------------------DG  252 (506)
T ss_pred             ceEEEEcCceeeeehhhHHHhc-CCeEEEEEehhhhcccc--------------------------------------CH
Confidence            4689999999999999888888 99999999887766421                                      02


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      ++.. ..++.+.+.|++|+++++|.....+.+...-+...+      .++   ++.+++++|.+++|.|.+.
T Consensus       253 Eisk-~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~------ak~---~k~~tle~DvlLVsiGRrP  314 (506)
T KOG1335|consen  253 EISK-AFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVEN------AKT---GKKETLECDVLLVSIGRRP  314 (506)
T ss_pred             HHHH-HHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEe------cCC---CceeEEEeeEEEEEccCcc
Confidence            2222 234444568999999999999998765333344332      222   2468999999999999654

>PLN03000 amine oxidase

Probab=97.38  E-value=0.00021  Score=75.51  Aligned_cols=42  Identities=33%  Similarity=0.676  Sum_probs=38.3

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccc
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW  131 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~  131 (356)
                      ...+|+|||||++|+.+|+.|.+. |++|+|+|+...+||..+
T Consensus       183 ~~~~VvIIGaG~aGL~aA~~L~~~-G~~V~VlE~~~riGGRi~  224 (881)
T PLN03000        183 SKSSVVIVGAGLSGLAAARQLMRF-GFKVTVLEGRKRPGGRVY  224 (881)
T ss_pred             CCCCEEEECccHHHHHHHHHHHHC-CCcEEEEEccCcCCCCcc
Confidence            358999999999999999999999 999999999999887654

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.31  E-value=0.0029  Score=60.81  Aligned_cols=133  Identities=19%  Similarity=0.213  Sum_probs=77.8

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccc----------------hHHHHHHHh
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRK----------------PAHIFLDEL  153 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~----------------~~~~~l~~~  153 (356)
                      .+|+|.||-||.-|+.|+.|.+..+.+++.+||.+..   .|..|.+....-..-                ....+|.+.
T Consensus         5 ~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F---~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~h   81 (436)
T COG3486           5 VLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF---SWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHEH   81 (436)
T ss_pred             ceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC---CcCCCcccCCccccccchhhhccccCCCCchHHHHHHHHc
Confidence            5899999999999999999998646899999998754   376665543221111                223444444


Q ss_pred             CCCcc--ccCCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeC-CeEEE--EEEcceeeecccCCCCCCCCeE
Q 018414          154 GIDYD--EQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-GRVGG--VVTNWALVSMNHDTQSCMDPNV  228 (356)
Q Consensus       154 G~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~-~~v~g--v~~~~~~~~~~~~~~~~g~~~~  228 (356)
                      |--|.  ..+.+.  ....+|.+. .+.+... --.++++.+|++|..-+ +....  +.+.              +...
T Consensus        82 ~RLy~Fl~~e~f~--i~R~Ey~dY-~~Waa~~-l~~~rfg~~V~~i~~~~~d~~~~~~~~t~--------------~~~~  143 (436)
T COG3486          82 GRLYEFLNYETFH--IPRREYNDY-CQWAASQ-LPSLRFGEEVTDISSLDGDAVVRLFVVTA--------------NGTV  143 (436)
T ss_pred             chHhhhhhhhccc--ccHHHHHHH-HHHHHhh-CCccccCCeeccccccCCcceeEEEEEcC--------------CCcE
Confidence            31111  011111  112333332 2333322 25678899999774322 22222  2221              1358


Q ss_pred             EEcCEEEEcCCCCCC
Q 018414          229 MEAKVVVSSCGHDGP  243 (356)
Q Consensus       229 i~Ak~VI~AtGg~~~  243 (356)
                      ++|+.||+.+|....
T Consensus       144 y~ar~lVlg~G~~P~  158 (436)
T COG3486         144 YRARNLVLGVGTQPY  158 (436)
T ss_pred             EEeeeEEEccCCCcC
Confidence            999999999996653

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=97.26  E-value=0.0022  Score=64.30  Aligned_cols=116  Identities=17%  Similarity=0.230  Sum_probs=70.5

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~  169 (356)
                      -.|+|||+|..|+-+|..+.+. |. +|++++....+.....                          . ...++.+.  
T Consensus       282 k~VvVIGgG~~g~e~A~~~~~~-ga~~Vt~~~~~~~~~~~~~--------------------------~-~~~~~~~~--  331 (471)
T PRK12810        282 KHVVVIGGGDTGMDCVGTAIRQ-GAKSVTQRDIMPMPPSRRN--------------------------K-NNPWPYWP--  331 (471)
T ss_pred             CEEEEECCcHHHHHHHHHHHHc-CCCeEEEccccCCCccccc--------------------------c-ccCCcccc--
Confidence            4699999999999999988887 65 7887775543221000                          0 00000000  


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccC--CCCCCCCeEEEcCEEEEcCCCCC
Q 018414          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHD--TQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~--~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      ..+   ..+.+. +.|+++++++.++++..+++++.+|.....  .....  ....++..++.+|.||+|+|...
T Consensus       332 ~~~---~~~~~~-~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~--~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p  400 (471)
T PRK12810        332 MKL---EVSNAH-EEGVEREFNVQTKEFEGENGKVTGVKVVRT--ELGEGDFEPVEGSEFVLPADLVLLAMGFTG  400 (471)
T ss_pred             hHH---HHHHHH-HcCCeEEeccCceEEEccCCEEEEEEEEEE--EecCCCccccCCceEEEECCEEEECcCcCC
Confidence            001   123333 569999999999999766788888765321  01000  00012346899999999999554

>PLN02976 amine oxidase

Probab=97.23  E-value=0.00036  Score=76.62  Aligned_cols=41  Identities=32%  Similarity=0.614  Sum_probs=37.4

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~  130 (356)
                      ..+||+|||+|++|+.+|+.|++. |++|+|+|+...+||..
T Consensus       692 ~~~dV~IIGAG~AGLaAA~~L~~~-G~~V~VlEa~~~vGGri  732 (1713)
T PLN02976        692 DRKKIIVVGAGPAGLTAARHLQRQ-GFSVTVLEARSRIGGRV  732 (1713)
T ss_pred             CCCcEEEECchHHHHHHHHHHHHC-CCcEEEEeeccCCCCce
Confidence            358999999999999999999999 99999999998888764

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=97.23  E-value=0.00041  Score=66.77  Aligned_cols=40  Identities=40%  Similarity=0.655  Sum_probs=34.1

Q ss_pred             cccEEEECCCHHHHHHHHHhhcC-CCCeEEEEeccCCCCCc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGG  129 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~-~G~~V~llEk~~~~Gg~  129 (356)
                      ..+|+|||||++||++||+|++. |...++|+|+.+..||-
T Consensus        11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGw   51 (491)
T KOG1276|consen   11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGW   51 (491)
T ss_pred             cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccce
Confidence            36999999999999999999996 34456779999998874

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=97.20  E-value=0.0023  Score=61.53  Aligned_cols=105  Identities=23%  Similarity=0.237  Sum_probs=66.9

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCe-EEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQ-IAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~-V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~  169 (356)
                      -.|+|||+|..|+.+|..|.+. |.+ |+|+++......                           +           ..
T Consensus       173 ~~vvViG~G~~g~e~A~~l~~~-g~~~Vtvi~~~~~~~~---------------------------~-----------~~  213 (352)
T PRK12770        173 KKVVVVGAGLTAVDAALEAVLL-GAEKVYLAYRRTINEA---------------------------P-----------AG  213 (352)
T ss_pred             CEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeecchhhC---------------------------C-----------CC
Confidence            3799999999999999999888 887 999987632100                           0           00


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccC-C-------CCCCCCeEEEcCEEEEcCCCC
Q 018414          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHD-T-------QSCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~-~-------~~~g~~~~i~Ak~VI~AtGg~  241 (356)
                          ..+.+.+. +.|+++++++.++++..+ +++..+......  ++.. .       ...++..++.+|.||+|+|..
T Consensus       214 ----~~~~~~l~-~~gi~i~~~~~v~~i~~~-~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~  285 (352)
T PRK12770        214 ----KYEIERLI-ARGVEFLELVTPVRIIGE-GRVEGVELAKMR--LGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEI  285 (352)
T ss_pred             ----HHHHHHHH-HcCCEEeeccCceeeecC-CcEeEEEEEEEE--ecCcCcccCcCceecCCCeEEEECCEEEECcccC
Confidence                11223343 569999999998888644 445555432110  0000 0       001234679999999999965


Q ss_pred             C
Q 018414          242 G  242 (356)
Q Consensus       242 ~  242 (356)
                      .
T Consensus       286 p  286 (352)
T PRK12770        286 P  286 (352)
T ss_pred             C
Confidence            4

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=97.19  E-value=0.00048  Score=67.16  Aligned_cols=41  Identities=39%  Similarity=0.589  Sum_probs=36.0

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~  130 (356)
                      ...|||||||.|||+||.+|-++...+|+|+|..+.+||..
T Consensus        21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI   61 (498)
T KOG0685|consen   21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRI   61 (498)
T ss_pred             CceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceE
Confidence            45899999999999999999976478999999999998753

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.15  E-value=0.0063  Score=63.58  Aligned_cols=108  Identities=16%  Similarity=0.184  Sum_probs=69.7

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~  169 (356)
                      ..|+|||||..|+-+|..+.+. |. +|+++.+.....   |..                                  . 
T Consensus       469 k~VvVIGgG~~a~d~A~~a~r~-ga~~Vt~i~~~~~~~---~~~----------------------------------~-  509 (654)
T PRK12769        469 LNVVVLGGGDTAMDCVRTALRH-GASNVTCAYRRDEAN---MPG----------------------------------S-  509 (654)
T ss_pred             CeEEEECCcHHHHHHHHHHHHc-CCCeEEEeEecCCCC---CCC----------------------------------C-
Confidence            4799999999999999988888 75 699998764211   100                                  0 


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEe-CCeEEEEEEcceeeecccCCCC------CCCCeEEEcCEEEEcCCCCC
Q 018414          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQS------CMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~-~~~v~gv~~~~~~~~~~~~~~~------~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      .    ..++.+. +.|+++++++.++++..+ ++++.++.+..........++.      .++..++.+|.||+|.|-..
T Consensus       510 ~----~e~~~~~-~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p  584 (654)
T PRK12769        510 K----KEVKNAR-EEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNP  584 (654)
T ss_pred             H----HHHHHHH-HcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCC
Confidence            0    1123343 569999999999998754 5788777753210000000010      12345799999999999543

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=97.14  E-value=0.0032  Score=64.47  Aligned_cols=97  Identities=15%  Similarity=0.086  Sum_probs=64.0

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.|+|||||..|+..|..|++. |.+|+++++.+...                                        ...
T Consensus       144 ~~VvVIGgG~~g~E~A~~L~~~-g~~Vtli~~~~~~~----------------------------------------~~~  182 (555)
T TIGR03143       144 MDVFVIGGGFAAAEEAVFLTRY-ASKVTVIVREPDFT----------------------------------------CAK  182 (555)
T ss_pred             CEEEEECCCHHHHHHHHHHHcc-CCEEEEEEeCCccc----------------------------------------cCH
Confidence            4799999999999999999999 99999999875310                                        001


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEE--EcCE----EEEcCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVM--EAKV----VVSSCGHDG  242 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i--~Ak~----VI~AtGg~~  242 (356)
                          .+.+++.++.|+++++++.++++.. ++.+..+....      ..   +|+..++  .+|.    ||+|+|-..
T Consensus       183 ----~~~~~~~~~~gV~i~~~~~V~~i~~-~~~v~~v~~~~------~~---~G~~~~~~~~~D~~~~~Vi~a~G~~P  246 (555)
T TIGR03143       183 ----LIAEKVKNHPKIEVKFNTELKEATG-DDGLRYAKFVN------NV---TGEITEYKAPKDAGTFGVFVFVGYAP  246 (555)
T ss_pred             ----HHHHHHHhCCCcEEEeCCEEEEEEc-CCcEEEEEEEE------CC---CCCEEEEeccccccceEEEEEeCCCC
Confidence                1122233356999999999999874 34444433211      01   1122333  3665    999999554

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=97.11  E-value=0.0061  Score=64.72  Aligned_cols=108  Identities=13%  Similarity=0.163  Sum_probs=69.9

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCe-EEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQ-IAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~-V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~  169 (356)
                      -.|+|||||..|+-+|..|.+. |.+ |+++++.....   +.                                  ...
T Consensus       571 k~VvVIGgG~~a~d~A~~~~r~-Ga~~Vtlv~r~~~~~---~~----------------------------------~~~  612 (752)
T PRK12778        571 KKVAVVGGGNTAMDSARTAKRL-GAERVTIVYRRSEEE---MP----------------------------------ARL  612 (752)
T ss_pred             CcEEEECCcHHHHHHHHHHHHc-CCCeEEEeeecCccc---CC----------------------------------CCH
Confidence            4799999999999999999998 887 99999864210   00                                  000


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEe-CCeEEEEEEcceee-ecccCCC-----CCCCCeEEEcCEEEEcCCCCC
Q 018414          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALV-SMNHDTQ-----SCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~-~~~v~gv~~~~~~~-~~~~~~~-----~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      .+     ++.+. +.|+++++++.+.++..+ ++++.++.+..... ..+.++.     ..++..++.+|.||+|.|-..
T Consensus       613 ~e-----~~~~~-~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p  686 (752)
T PRK12778        613 EE-----VKHAK-EEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSP  686 (752)
T ss_pred             HH-----HHHHH-HcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCC
Confidence            11     12233 569999999999998764 46777776531100 0000000     012345799999999999554

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=97.08  E-value=0.014  Score=63.81  Aligned_cols=157  Identities=20%  Similarity=0.222  Sum_probs=94.9

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~  169 (356)
                      -.|+|||+|..|+..|..|++. |. .|+|+|..+...                                          
T Consensus       318 k~VvViG~G~~g~e~A~~L~~~-G~~vV~vv~~~~~~~------------------------------------------  354 (985)
T TIGR01372       318 KRIVVATNNDSAYRAAADLLAA-GIAVVAIIDARADVS------------------------------------------  354 (985)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCceEEEEccCcchh------------------------------------------
Confidence            4799999999999999999998 84 588998764210                                          


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCCCCccc
Q 018414          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGV  249 (356)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~~~~~~  249 (356)
                          ..+.+.+. +.||+++.++.++++.. ++++.+|....      .    .++..++.+|.|+++.|-...     .
T Consensus       355 ----~~l~~~L~-~~GV~i~~~~~v~~i~g-~~~v~~V~l~~------~----~g~~~~i~~D~V~va~G~~Pn-----t  413 (985)
T TIGR01372       355 ----PEARAEAR-ELGIEVLTGHVVAATEG-GKRVSGVAVAR------N----GGAGQRLEADALAVSGGWTPV-----V  413 (985)
T ss_pred             ----HHHHHHHH-HcCCEEEcCCeEEEEec-CCcEEEEEEEe------c----CCceEEEECCEEEEcCCcCch-----h
Confidence                01234443 67999999999998864 34565665431      0    123467999999999994432     2


Q ss_pred             hhhhccCcccccccccccccccccceeeeccccccCceeEeceEEEEecCCcccCCccceeeeehHHHHHHHHHHhCCCC
Q 018414          250 KRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPN  329 (356)
Q Consensus       250 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~~~~~~~~~~g~~~~~~~~g~~l~sG~~~~~l~l~~~~~~~  329 (356)
                      ..+...+..        +..+.....++..+.  .+|+|+.|...    |.    ......+..|..++..+.++++...
T Consensus       414 ~L~~~lg~~--------~~~~~~~~~~~~~t~--v~gVyaaGD~~----g~----~~~~~A~~eG~~Aa~~i~~~lg~~~  475 (985)
T TIGR01372       414 HLFSQRGGK--------LAWDAAIAAFLPGDA--VQGCILAGAAN----GL----FGLAAALADGAAAGAAAARAAGFEG  475 (985)
T ss_pred             HHHHhcCCC--------eeeccccCceecCCC--CCCeEEeeccC----Cc----cCHHHHHHHHHHHHHHHHHHcCCCC
Confidence            222222210        001100000000011  37888877421    11    1223345788999999999997743

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=97.05  E-value=0.0011  Score=70.26  Aligned_cols=38  Identities=34%  Similarity=0.596  Sum_probs=35.7

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG  128 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg  128 (356)
                      -..|.|||+||+||+||-+|-+. |+.|+|.||...+||
T Consensus      1785 g~~vaiigsgpaglaaadqlnk~-gh~v~vyer~dr~gg 1822 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKA-GHTVTVYERSDRVGG 1822 (2142)
T ss_pred             CcEEEEEccCchhhhHHHHHhhc-CcEEEEEEecCCcCc
Confidence            36899999999999999999999 999999999998886

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=97.02  E-value=0.011  Score=59.17  Aligned_cols=108  Identities=18%  Similarity=0.207  Sum_probs=69.4

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~  169 (356)
                      -.|+|||+|..|+-+|..+.+. |. +|+|+++.....-.                                     ...
T Consensus       283 k~VvVIGgG~~a~d~A~~a~~~-Ga~~Vtvv~r~~~~~~~-------------------------------------~~~  324 (467)
T TIGR01318       283 KRVVVLGGGDTAMDCVRTAIRL-GAASVTCAYRRDEANMP-------------------------------------GSR  324 (467)
T ss_pred             CEEEEECCcHHHHHHHHHHHHc-CCCeEEEEEecCcccCC-------------------------------------CCH
Confidence            4799999999999999998888 75 79999986431100                                     000


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEe-CCeEEEEEEcceee-ecccCCC-----CCCCCeEEEcCEEEEcCCCCC
Q 018414          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALV-SMNHDTQ-----SCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~-~~~v~gv~~~~~~~-~~~~~~~-----~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      .     .++.+. +.|+++++++.++++..+ ++++.++.+..... ..+.++.     ..++..++.+|.||+|+|-..
T Consensus       325 ~-----e~~~~~-~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p  398 (467)
T TIGR01318       325 R-----EVANAR-EEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQP  398 (467)
T ss_pred             H-----HHHHHH-hcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCC
Confidence            1     122333 569999999999998764 56777765421000 0000000     012356899999999999554

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=97.01  E-value=0.0075  Score=58.13  Aligned_cols=92  Identities=20%  Similarity=0.294  Sum_probs=60.8

Q ss_pred             ccEEEECCCHHHHHHHHHhhc----CCC--CeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeE
Q 018414           91 TDVVVVGAGSAGLSCAYELSK----NPN--IQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYV  164 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~----~~G--~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~  164 (356)
                      -.|+|||+|.+|+.+|..|++    . |  .+|+|+.. +.+..                                    
T Consensus       146 ~~vvVvG~G~~g~E~A~~l~~~~~~~-g~~~~V~li~~-~~~l~------------------------------------  187 (364)
T TIGR03169       146 KRLAVVGGGAAGVEIALALRRRLPKR-GLRGQVTLIAG-ASLLP------------------------------------  187 (364)
T ss_pred             ceEEEECCCHHHHHHHHHHHHHHHhc-CCCceEEEEeC-Ccccc------------------------------------
Confidence            489999999999999999975    3 3  47888832 21100                                    


Q ss_pred             EEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          165 VIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       165 ~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                        .....+...+.+.+. +.||+++.+++++++.  ++   .+.+.              +..++.+|.||+|+|...
T Consensus       188 --~~~~~~~~~~~~~l~-~~gV~v~~~~~v~~i~--~~---~v~~~--------------~g~~i~~D~vi~a~G~~p  243 (364)
T TIGR03169       188 --GFPAKVRRLVLRLLA-RRGIEVHEGAPVTRGP--DG---ALILA--------------DGRTLPADAILWATGARA  243 (364)
T ss_pred             --cCCHHHHHHHHHHHH-HCCCEEEeCCeeEEEc--CC---eEEeC--------------CCCEEecCEEEEccCCCh
Confidence              001222333444444 6799999999998874  23   23332              136799999999999554

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]

Probab=96.98  E-value=0.0048  Score=56.87  Aligned_cols=41  Identities=24%  Similarity=0.380  Sum_probs=31.1

Q ss_pred             ccEEEECCCHHHHHHHHHhhcC------CCCeEEEEeccCCCCCccc
Q 018414           91 TDVVVVGAGSAGLSCAYELSKN------PNIQIAIIEQSVSPGGGAW  131 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~------~G~~V~llEk~~~~Gg~~~  131 (356)
                      .+++|||+|..||++|+.+.+.      |-.+|.+++-...+-..++
T Consensus         4 ~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~T~s~   50 (342)
T KOG3923|consen    4 PRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTEDTTSD   50 (342)
T ss_pred             ccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCccccccc
Confidence            5899999999999999777662      3578999987655443333

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=96.91  E-value=0.01  Score=56.98  Aligned_cols=134  Identities=18%  Similarity=0.277  Sum_probs=65.9

Q ss_pred             cccEEEECCCHHHHHHHHHhhcC-CCCeEEEEeccCCCC---CccccCCccchh-----hhccc-hH-HHHHHHhCCCcc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPG---GGAWLGGQLFSA-----MVVRK-PA-HIFLDELGIDYD  158 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~-~G~~V~llEk~~~~G---g~~~~~g~~~~~-----~~~~~-~~-~~~l~~~G~~~~  158 (356)
                      ...|+|||||.++..++..|.++ +..+|.++-|+...-   -+.+.. .++..     +.... .. .+.+.+..    
T Consensus       190 ~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~n-e~f~P~~v~~f~~l~~~~R~~~l~~~~----  264 (341)
T PF13434_consen  190 GKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVN-EIFSPEYVDYFYSLPDEERRELLREQR----  264 (341)
T ss_dssp             -EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHH-GGGSHHHHHHHHTS-HHHHHHHHHHTG----
T ss_pred             CCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchh-hhcCchhhhhhhcCCHHHHHHHHHHhH----
Confidence            57899999999999999999986 135899998875321   000000 01110     00000 01 11222211    


Q ss_pred             ccCCeEEEec--hHHHHHHHHHH-HHcCCCcEEEcCeEEEEEEEeC-CeEEEEEEcceeeecccCCCCCCCCeEEEcCEE
Q 018414          159 EQDNYVVIKH--AALFTSTIMSK-LLARPNVKLFNAVAAEDLIVKG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVV  234 (356)
Q Consensus       159 ~~~~~~~~~~--~~~~~~~l~~~-~~~~~gv~i~~~~~v~~i~~~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~V  234 (356)
                       .-.|..+..  -..+.+.++++ +..+..++++.+++|+++...+ +++.-...+       ..   .++..++.+|.|
T Consensus       265 -~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~l~~~~-------~~---~~~~~~~~~D~V  333 (341)
T PF13434_consen  265 -HTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVRLTLRH-------RQ---TGEEETLEVDAV  333 (341)
T ss_dssp             -GGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSEEEEEEE-------TT---T--EEEEEESEE
T ss_pred             -hhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEEEEEEEE-------CC---CCCeEEEecCEE
Confidence             001111110  12223333332 3334568999999999999887 454433222       11   124578999999


Q ss_pred             EEcCC
Q 018414          235 VSSCG  239 (356)
Q Consensus       235 I~AtG  239 (356)
                      |+|||
T Consensus       334 ilATG  338 (341)
T PF13434_consen  334 ILATG  338 (341)
T ss_dssp             EE---
T ss_pred             EEcCC
Confidence            99999

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=96.90  E-value=0.02  Score=61.97  Aligned_cols=175  Identities=17%  Similarity=0.226  Sum_probs=91.6

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCC-CeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPN-IQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G-~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~  169 (356)
                      -.|+|||||..|+-+|..+.+.+| .+|+++.+....-   +                                +  ...
T Consensus       669 KrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~---M--------------------------------P--A~~  711 (1019)
T PRK09853        669 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQE---M--------------------------------P--AWR  711 (1019)
T ss_pred             CEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCccc---c--------------------------------c--ccH
Confidence            479999999999999998887635 4899999874200   0                                0  000


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccC--CCCCCCCeEEEcCEEEEcCCCCCCCCCc
Q 018414          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHD--TQSCMDPNVMEAKVVVSSCGHDGPFGAT  247 (356)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~--~~~~g~~~~i~Ak~VI~AtGg~~~~~~~  247 (356)
                      .+     ++.+. +.|+++++.+.+.++.. ++++.......+....++.  ....++..++.+|.||+|+|-...    
T Consensus       712 eE-----le~Al-eeGVe~~~~~~p~~I~~-dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pn----  780 (1019)
T PRK09853        712 EE-----YEEAL-EDGVEFKELLNPESFDA-DGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVD----  780 (1019)
T ss_pred             HH-----HHHHH-HcCCEEEeCCceEEEEc-CCcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCC----
Confidence            11     12222 35899999988888853 4444322111000000000  000123578999999999995432    


Q ss_pred             cchhhhccCcccccccccccccccccceeeeccccccCceeEeceEEEEecCCcccCCc-cceeeeehHHHHHHHHHHhC
Q 018414          248 GVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPT-FGAMMISGQKAAHLALKSLG  326 (356)
Q Consensus       248 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~~~~~~~~~~g~~~~~~~-~g~~l~sG~~~~~l~l~~~~  326 (356)
                       ...+...|+...-.+...  ++  +..     +.-.+++|..|..+.        ++. .-..+..|..+++.|+...+
T Consensus       781 -telle~~GL~ld~~G~I~--VD--etl-----qTs~pgVFAaGD~a~--------Gp~tvv~Ai~qGr~AA~nI~~~~~  842 (1019)
T PRK09853        781 -TELLKANGIPLDKKGWPV--VD--ANG-----ETSLTNVYMIGDVQR--------GPSTIVAAIADARRAADAILSREG  842 (1019)
T ss_pred             -hhHHHhcCccccCCCCEE--eC--CCc-----ccCCCCEEEEecccc--------CchHHHHHHHHHHHHHHHHhhhcC
Confidence             222333332000001000  10  100     011377887765321        121 12234788999999998877


Q ss_pred             CCCCC
Q 018414          327 QPNAL  331 (356)
Q Consensus       327 ~~~~~  331 (356)
                      .....
T Consensus       843 ~~~~~  847 (1019)
T PRK09853        843 IRSHQ  847 (1019)
T ss_pred             CCccc
Confidence            54433

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=96.86  E-value=0.013  Score=63.63  Aligned_cols=108  Identities=12%  Similarity=0.179  Sum_probs=68.8

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -+|+|||||..|+-+|..+.+. |.+|+++.+....   .|                                +.  ...
T Consensus       448 k~VvVIGGG~tA~D~A~ta~R~-Ga~Vtlv~rr~~~---~m--------------------------------pa--~~~  489 (944)
T PRK12779        448 KEVFVIGGGNTAMDAARTAKRL-GGNVTIVYRRTKS---EM--------------------------------PA--RVE  489 (944)
T ss_pred             CEEEEECCCHHHHHHHHHHHHc-CCEEEEEEecCcc---cc--------------------------------cc--cHH
Confidence            4799999999999999999999 9999999876320   00                                00  011


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeC--CeEEEEEEcceee-ecccCC----CCCCCCeEEEcCEEEEcCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKG--GRVGGVVTNWALV-SMNHDT----QSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~--~~v~gv~~~~~~~-~~~~~~----~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      +     ++.+. +.|+++++.+.++++..++  +++.++.+..... ..+.++    ...++..++.+|.||+|.|-..
T Consensus       490 e-----~~~a~-eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p  562 (944)
T PRK12779        490 E-----LHHAL-EEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTA  562 (944)
T ss_pred             H-----HHHHH-HCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcCC
Confidence            1     11222 4599999999999987653  3676665421000 000000    0023456799999999999543

>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=96.73  E-value=0.015  Score=55.69  Aligned_cols=39  Identities=26%  Similarity=0.350  Sum_probs=35.9

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG  129 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~  129 (356)
                      +|||+|+|.|..=+..+..|+.. |.+|+.+||++.-|+.
T Consensus         4 eyDvivlGTgl~ecilS~~Ls~~-gkkVLhiDrN~yYG~~   42 (440)
T KOG1439|consen    4 EYDVIVLGTGLTECILSGALSVD-GKKVLHIDRNDYYGGE   42 (440)
T ss_pred             ceeEEEEcCCchhheeeeeeeec-CcEEEEEeCCCCCCcc
Confidence            49999999999999999999999 9999999999887754

>PRK13984 putative oxidoreductase; Provisional

Probab=96.44  E-value=0.022  Score=58.94  Aligned_cols=109  Identities=15%  Similarity=0.260  Sum_probs=65.9

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCC------eEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeE
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNI------QIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYV  164 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~------~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~  164 (356)
                      -.|+|||||..|+-+|..|++. +.      +|.++.......  .+                                +
T Consensus       419 k~VvVIGGG~~g~e~A~~l~r~-~~~~~g~~~V~v~~~~r~~~--~~--------------------------------~  463 (604)
T PRK13984        419 RSLVVIGGGNVAMDIARSMARL-QKMEYGEVNVKVTSLERTFE--EM--------------------------------P  463 (604)
T ss_pred             CcEEEECCchHHHHHHHHHHhc-cccccCceEEEEeccccCcc--cC--------------------------------C
Confidence            4899999999999999999876 43      566653211000  00                                0


Q ss_pred             EEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCC-----CCCCCeEEEcCEEEEcCC
Q 018414          165 VIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQ-----SCMDPNVMEAKVVVSSCG  239 (356)
Q Consensus       165 ~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~-----~~g~~~~i~Ak~VI~AtG  239 (356)
                        .....+     ..+. +.|+++++++.++++..+++++.++.........+.+..     ..++..++.+|.||+|.|
T Consensus       464 --~~~~e~-----~~~~-~~GV~i~~~~~~~~i~~~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG  535 (604)
T PRK13984        464 --ADMEEI-----EEGL-EEGVVIYPGWGPMEVVIENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIG  535 (604)
T ss_pred             --CCHHHH-----HHHH-HcCCEEEeCCCCEEEEccCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeC
Confidence              001111     1222 469999999988888767788888765421100111000     012346899999999999


Q ss_pred             CCC
Q 018414          240 HDG  242 (356)
Q Consensus       240 g~~  242 (356)
                      -..
T Consensus       536 ~~p  538 (604)
T PRK13984        536 QAP  538 (604)
T ss_pred             CCC
Confidence            553

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=96.44  E-value=0.023  Score=59.31  Aligned_cols=107  Identities=16%  Similarity=0.173  Sum_probs=65.0

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~  169 (356)
                      -.|+|||+|..|+-+|..|.+. |. +|+|+++....-   +.                                  ...
T Consensus       324 k~VvVIGgG~~a~e~A~~l~~~-Ga~~Vtlv~r~~~~~---mp----------------------------------a~~  365 (652)
T PRK12814        324 KKVVVIGGGNTAIDAARTALRL-GAESVTILYRRTREE---MP----------------------------------ANR  365 (652)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCCeEEEeeecCccc---CC----------------------------------CCH
Confidence            4799999999999999999988 75 699998764200   00                                  001


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEE--EEEEcceeeecccCC---CCCCCCeEEEcCEEEEcCCCC
Q 018414          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVG--GVVTNWALVSMNHDT---QSCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~--gv~~~~~~~~~~~~~---~~~g~~~~i~Ak~VI~AtGg~  241 (356)
                      .++     +.+. +.|++|++++.+.++..+++++.  .+....+....+...   ...++..++.+|.||+|.|-.
T Consensus       366 ~ei-----~~a~-~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~  436 (652)
T PRK12814        366 AEI-----EEAL-AEGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQ  436 (652)
T ss_pred             HHH-----HHHH-HcCCcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCc
Confidence            111     2222 45999999999988877666532  222211100000000   001234579999999999954

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=96.42  E-value=0.041  Score=60.22  Aligned_cols=108  Identities=14%  Similarity=0.209  Sum_probs=68.5

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCe-EEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQ-IAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~-V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~  169 (356)
                      -+|+|||||..|+-+|..+.+. |.+ |+++.+.....   +                                +  ...
T Consensus       572 k~VvVIGgG~tA~D~A~~a~rl-Ga~~Vtiv~rr~~~e---m--------------------------------~--a~~  613 (1006)
T PRK12775        572 KSVVVIGAGNTAMDCLRVAKRL-GAPTVRCVYRRSEAE---A--------------------------------P--ARI  613 (1006)
T ss_pred             CEEEEECCcHHHHHHHHHHHHc-CCCEEEEEeecCccc---C--------------------------------C--CCH
Confidence            5799999999999999999888 774 77777653210   0                                0  000


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEe-CCeEEEEEEcceee-ecccCC----CCCCCCeEEEcCEEEEcCCCCC
Q 018414          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALV-SMNHDT----QSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~-~~~v~gv~~~~~~~-~~~~~~----~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      .+     ++.+. +.|+++++++.++++..+ ++++.++.+..... ..+..+    ...++..++.+|.||+|.|-..
T Consensus       614 ~e-----~~~a~-eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p  686 (1006)
T PRK12775        614 EE-----IRHAK-EEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKA  686 (1006)
T ss_pred             HH-----HHHHH-hCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCC
Confidence            11     12233 579999999999998764 67888876532100 000000    0012345799999999999553

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.40  E-value=0.043  Score=51.88  Aligned_cols=77  Identities=21%  Similarity=0.340  Sum_probs=60.5

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~  169 (356)
                      ..||.|||||-+|+.+|+-|+-- -..|+++|-.+...                                          
T Consensus       354 gK~VAVIGGGNSGvEAAIDLAGi-v~hVtllEF~~eLk------------------------------------------  390 (520)
T COG3634         354 GKRVAVIGGGNSGVEAAIDLAGI-VEHVTLLEFAPELK------------------------------------------  390 (520)
T ss_pred             CceEEEECCCcchHHHHHhHHhh-hheeeeeecchhhh------------------------------------------
Confidence            35899999999999999999875 56799998654211                                          


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcc
Q 018414          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNW  211 (356)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~  211 (356)
                        ....|.++++.-+|++++.+..-+++.-++++|.|....+
T Consensus       391 --AD~VLq~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~d  430 (520)
T COG3634         391 --ADAVLQDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRD  430 (520)
T ss_pred             --hHHHHHHHHhcCCCcEEEecceeeEEecCCceecceEEEe
Confidence              1234566666678999999999999987778999987753

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.37  E-value=0.052  Score=56.61  Aligned_cols=108  Identities=14%  Similarity=0.126  Sum_probs=68.2

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~  169 (356)
                      -.|+|||+|..|+-+|..+.+. |. +|+++++.....   |.                                  ...
T Consensus       452 k~vvViGgG~~a~d~a~~~~~~-Ga~~Vt~v~rr~~~~---~~----------------------------------~~~  493 (639)
T PRK12809        452 KRVVVLGGGDTTMDCLRTSIRL-NAASVTCAYRRDEVS---MP----------------------------------GSR  493 (639)
T ss_pred             CeEEEECCcHHHHHHHHHHHHc-CCCeEEEeeecCccc---CC----------------------------------CCH
Confidence            4799999999999999888777 74 799998764321   00                                  000


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEe-CCeEEEEEEcceeeecccCCC------CCCCCeEEEcCEEEEcCCCCC
Q 018414          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQ------SCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~-~~~v~gv~~~~~~~~~~~~~~------~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      .++     ..+. +.|+++++++.++++..+ ++++.++.+..........++      ..++..++.+|.||+|.|-..
T Consensus       494 ~e~-----~~a~-~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p  567 (639)
T PRK12809        494 KEV-----VNAR-EEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQA  567 (639)
T ss_pred             HHH-----HHHH-HcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCC
Confidence            111     1222 569999999999999764 567877654210000000000      012356899999999999543

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=96.24  E-value=0.011  Score=60.93  Aligned_cols=97  Identities=22%  Similarity=0.323  Sum_probs=70.1

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechHH
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAAL  171 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~  171 (356)
                      .-+|||||.-|+.+|..|... |.+|.+++-.+..              +     .+.|++               +.  
T Consensus       147 ~avVIGGGLLGlEaA~~L~~~-Gm~~~Vvh~~~~l--------------M-----erQLD~---------------~a--  189 (793)
T COG1251         147 KAVVIGGGLLGLEAARGLKDL-GMEVTVVHIAPTL--------------M-----ERQLDR---------------TA--  189 (793)
T ss_pred             CcEEEccchhhhHHHHHHHhC-CCceEEEeecchH--------------H-----HHhhhh---------------HH--
Confidence            479999999999999999999 9999999865420              0     001110               11  


Q ss_pred             HHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          172 FTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       172 ~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                        ..++++..++.|++++++...+++.. ++++.++...+              +..+.|+.||.|+|-+.
T Consensus       190 --g~lL~~~le~~Gi~~~l~~~t~ei~g-~~~~~~vr~~D--------------G~~i~ad~VV~a~GIrP  243 (793)
T COG1251         190 --GRLLRRKLEDLGIKVLLEKNTEEIVG-EDKVEGVRFAD--------------GTEIPADLVVMAVGIRP  243 (793)
T ss_pred             --HHHHHHHHHhhcceeecccchhhhhc-CcceeeEeecC--------------CCcccceeEEEeccccc
Confidence              23344444578999999977777765 67788887763              47799999999999553

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=96.21  E-value=0.048  Score=51.44  Aligned_cols=95  Identities=19%  Similarity=0.296  Sum_probs=71.1

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -||+|||||-+.+-.|+.|++. +.+|+++=|++....                                          
T Consensus       144 k~v~ViGgG~sAve~Al~L~~~-a~~Vtlv~r~~~~ra------------------------------------------  180 (305)
T COG0492         144 KDVVVIGGGDSAVEEALYLSKI-AKKVTLVHRRDEFRA------------------------------------------  180 (305)
T ss_pred             CeEEEEcCCHHHHHHHHHHHHh-cCeEEEEecCcccCc------------------------------------------
Confidence            4999999999999999999998 899999988753211                                          


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                        ...+.+++.+..++++++++.+.++.-++  +.++...+.      .    ++...+..+.|.++.|...
T Consensus       181 --~~~~~~~l~~~~~i~~~~~~~i~ei~G~~--v~~v~l~~~------~----~~~~~~~~~gvf~~iG~~p  238 (305)
T COG0492         181 --EEILVERLKKNVKIEVLTNTVVKEILGDD--VEGVVLKNV------K----GEEKELPVDGVFIAIGHLP  238 (305)
T ss_pred             --CHHHHHHHHhcCCeEEEeCCceeEEecCc--cceEEEEec------C----CceEEEEeceEEEecCCCC
Confidence              12344555545589999999999997554  666666431      1    2346788999999999554

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=96.05  E-value=0.021  Score=56.04  Aligned_cols=103  Identities=13%  Similarity=0.234  Sum_probs=61.7

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCC-CCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCcccc--CCeEEE
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNP-NIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQ--DNYVVI  166 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~-G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~--~~~~~~  166 (356)
                      ...++|||+|++|..|+..+.+.+ -.+.+++-+....                             ++++.  ..+...
T Consensus        74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~-----------------------------pydr~~Ls~~~~~  124 (478)
T KOG1336|consen   74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLL-----------------------------PYDRARLSKFLLT  124 (478)
T ss_pred             cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccC-----------------------------cccchhcccceee
Confidence            357999999999999999998751 2345555433211                             01100  000000


Q ss_pred             echHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCC
Q 018414          167 KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGH  240 (356)
Q Consensus       167 ~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg  240 (356)
                      . ...+.....+ ..++.++++++++.|+.+...+..+   .+.              +.+++..+.+|+|||.
T Consensus       125 ~-~~~~a~r~~e-~Yke~gIe~~~~t~v~~~D~~~K~l---~~~--------------~Ge~~kys~LilATGs  179 (478)
T KOG1336|consen  125 V-GEGLAKRTPE-FYKEKGIELILGTSVVKADLASKTL---VLG--------------NGETLKYSKLIIATGS  179 (478)
T ss_pred             c-cccccccChh-hHhhcCceEEEcceeEEeeccccEE---EeC--------------CCceeecceEEEeecC
Confidence            0 0011111111 1236799999999999998877643   232              3578999999999997

>PLN02852 ferredoxin-NADP+ reductase

Probab=95.91  E-value=0.44  Score=48.01  Aligned_cols=59  Identities=12%  Similarity=0.146  Sum_probs=38.0

Q ss_pred             CCcEEEcCeEEEEEEEe---CCeEEEEEEcceeeecccCCC-----CCCCCeEEEcCEEEEcCCCCC
Q 018414          184 PNVKLFNAVAAEDLIVK---GGRVGGVVTNWALVSMNHDTQ-----SCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       184 ~gv~i~~~~~v~~i~~~---~~~v~gv~~~~~~~~~~~~~~-----~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      .++.|++...-++|+.+   +++|.++++......-....+     ..++..++.++.||.|-|-.+
T Consensus       288 ~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~  354 (491)
T PLN02852        288 RELHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKS  354 (491)
T ss_pred             ceEEEEccCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcccCCCCCEEEEECCEEEEeecCCC
Confidence            47999999888888742   268888887531110000000     124556899999999999654

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=95.90  E-value=0.07  Score=57.99  Aligned_cols=35  Identities=23%  Similarity=0.502  Sum_probs=29.2

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~  124 (356)
                      .-.|+|||||..|+-+|..+.+.+|. +|+++++..
T Consensus       666 GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~  701 (1012)
T TIGR03315       666 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT  701 (1012)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence            35799999999999999988874364 799999864

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=95.69  E-value=0.029  Score=53.37  Aligned_cols=41  Identities=20%  Similarity=0.186  Sum_probs=37.1

Q ss_pred             CCcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 018414           88 YADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG  129 (356)
Q Consensus        88 ~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~  129 (356)
                      ...|||+|+|.|..-+..+..|+.. |.+|+.||+++.-|..
T Consensus         4 ~~~yDvii~GTgl~esils~~Ls~~-~k~VlhiD~Nd~YG~~   44 (434)
T COG5044           4 ETLYDVIILGTGLRESILSAALSWD-GKNVLHIDKNDYYGST   44 (434)
T ss_pred             cccccEEEecccHHHHHHHHHhhhc-CceEEEEeCCCccCcc
Confidence            3469999999999999999999999 9999999999887754

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=95.62  E-value=0.17  Score=51.95  Aligned_cols=107  Identities=17%  Similarity=0.213  Sum_probs=66.2

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCC-CeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPN-IQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G-~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~  169 (356)
                      -.|+|||+|..|+-+|..+.+. + .+|+|+.+.....   +                                +  .+.
T Consensus       268 k~v~ViGgg~~a~d~a~~a~~l-ga~~v~ii~r~~~~~---~--------------------------------~--~~~  309 (564)
T PRK12771        268 KRVVVIGGGNTAMDAARTARRL-GAEEVTIVYRRTRED---M--------------------------------P--AHD  309 (564)
T ss_pred             CCEEEECChHHHHHHHHHHHHc-CCCEEEEEEecCccc---C--------------------------------C--CCH
Confidence            4799999999999999888887 6 6788888764210   0                                0  000


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceee-ecccCCCC----CCCCeEEEcCEEEEcCCCCC
Q 018414          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALV-SMNHDTQS----CMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~-~~~~~~~~----~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      ..     ++.+. +.|+++++++.+.++..+++++.++....... ..+. .+.    .++..++.+|.||+|.|-..
T Consensus       310 ~~-----~~~a~-~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~-~g~~~~~~g~~~~i~~D~Vi~A~G~~p  380 (564)
T PRK12771        310 EE-----IEEAL-REGVEINWLRTPVEIEGDENGATGLRVITVEKMELDE-DGRPSPVTGEEETLEADLVVLAIGQDI  380 (564)
T ss_pred             HH-----HHHHH-HcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCC-CCCeeecCCceEEEECCEEEECcCCCC
Confidence            11     22233 46999999999999976654444554321000 0000 000    23456899999999999543

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=95.61  E-value=0.19  Score=50.60  Aligned_cols=35  Identities=23%  Similarity=0.376  Sum_probs=28.5

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS  125 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~  125 (356)
                      -.|+|||+|..|+-+|..+.+..+.+|+++|..+.
T Consensus       284 k~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~  318 (485)
T TIGR01317       284 KKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPK  318 (485)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCC
Confidence            47999999999999988777762457999997653

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=95.12  E-value=0.02  Score=55.32  Aligned_cols=30  Identities=37%  Similarity=0.563  Sum_probs=28.1

Q ss_pred             HHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414          100 SAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (356)
Q Consensus       100 ~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~  130 (356)
                      +|||+||++|++. |++|+|+|+.+.+||.+
T Consensus         1 iaGL~aA~~L~~~-G~~v~vlEa~~r~GGr~   30 (450)
T PF01593_consen    1 IAGLAAAYYLAKA-GYDVTVLEASDRVGGRI   30 (450)
T ss_dssp             HHHHHHHHHHHHT-TTEEEEEESSSSSBTTS
T ss_pred             ChHHHHHHHHHhC-CCCEEEEEcCCCCCcce
Confidence            5899999999999 99999999999999875

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=94.82  E-value=0.15  Score=45.48  Aligned_cols=98  Identities=17%  Similarity=0.247  Sum_probs=71.6

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      .-.+|||||-+-+.=|..|.+. +.+|-||-|.+..                                            
T Consensus       158 k~laVIGGGDsA~EEA~fLtky-askVyii~Rrd~f--------------------------------------------  192 (322)
T KOG0404|consen  158 KPLAVIGGGDSAMEEALFLTKY-ASKVYIIHRRDHF--------------------------------------------  192 (322)
T ss_pred             CeeEEEcCcHHHHHHHHHHHhh-ccEEEEEEEhhhh--------------------------------------------
Confidence            4589999999999999999999 9999999887531                                            


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      ...+.+.+++++++++++++++.+.+..-+.+.+.++...      |.++   ++...+..+-+..+-|+..
T Consensus       193 RAs~~Mq~ra~~npnI~v~~nt~~~ea~gd~~~l~~l~ik------n~~t---ge~~dl~v~GlFf~IGH~P  255 (322)
T KOG0404|consen  193 RASKIMQQRAEKNPNIEVLYNTVAVEALGDGKLLNGLRIK------NVKT---GEETDLPVSGLFFAIGHSP  255 (322)
T ss_pred             hHHHHHHHHHhcCCCeEEEechhhhhhccCcccccceEEE------eccc---CcccccccceeEEEecCCc
Confidence            1124556777888999999999887776554444444442      2222   2456788888888888653

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=94.55  E-value=0.19  Score=48.82  Aligned_cols=98  Identities=20%  Similarity=0.280  Sum_probs=61.6

Q ss_pred             ccEEEECCCHHHHHHHHHhhcC---------C----CCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCc
Q 018414           91 TDVVVVGAGSAGLSCAYELSKN---------P----NIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDY  157 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~---------~----G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~  157 (356)
                      -.++||||||.|...|.+|+..         |    ..+|+++|..+.+                    ..+++      
T Consensus       219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~i--------------------L~mFd------  272 (491)
T KOG2495|consen  219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHI--------------------LNMFD------  272 (491)
T ss_pred             EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhH--------------------HHHHH------
Confidence            4699999999999999998731         1    4678888876521                    01111      


Q ss_pred             cccCCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEc
Q 018414          158 DEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSS  237 (356)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~A  237 (356)
                                  ..+... .+....+.++++..++.|.++.-+  .+ .+.+.            +|+..+|..-.+|.|
T Consensus       273 ------------krl~~y-ae~~f~~~~I~~~~~t~Vk~V~~~--~I-~~~~~------------~g~~~~iPYG~lVWa  324 (491)
T KOG2495|consen  273 ------------KRLVEY-AENQFVRDGIDLDTGTMVKKVTEK--TI-HAKTK------------DGEIEEIPYGLLVWA  324 (491)
T ss_pred             ------------HHHHHH-HHHHhhhccceeecccEEEeecCc--EE-EEEcC------------CCceeeecceEEEec
Confidence                        122222 222334779999999988877422  11 12221            234577888899999


Q ss_pred             CCCCC
Q 018414          238 CGHDG  242 (356)
Q Consensus       238 tGg~~  242 (356)
                      ||...
T Consensus       325 tG~~~  329 (491)
T KOG2495|consen  325 TGNGP  329 (491)
T ss_pred             CCCCC
Confidence            99544

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=94.19  E-value=0.24  Score=47.98  Aligned_cols=106  Identities=20%  Similarity=0.154  Sum_probs=61.6

Q ss_pred             EEEECCCHHHHHHHHHhhc-CCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechHH
Q 018414           93 VVVVGAGSAGLSCAYELSK-NPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAAL  171 (356)
Q Consensus        93 VvIIGgG~aGl~aA~~La~-~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~  171 (356)
                      ++|||+|.+|+.+|..+.+ .+..++.++.+........+.   +.. .+.          .+.  .         ....
T Consensus         1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~---~~~-~~~----------~~~--~---------~~~~   55 (415)
T COG0446           1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCP---LSL-YVG----------GGI--A---------SLED   55 (415)
T ss_pred             CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCc---cch-HHh----------ccc--C---------CHHH
Confidence            5899999999999998877 236788877776533211100   000 000          000  0         0000


Q ss_pred             HHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          172 FTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       172 ~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      +... .... .+.+++++.+++|+.+......+   .+.              +. .+..|++|+|||....
T Consensus        56 ~~~~-~~~~-~~~~i~~~~~~~v~~id~~~~~v---~~~--------------~g-~~~yd~LvlatGa~~~  107 (415)
T COG0446          56 LRYP-PRFN-RATGIDVRTGTEVTSIDPENKVV---LLD--------------DG-EIEYDYLVLATGARPR  107 (415)
T ss_pred             hccc-chhH-HhhCCEEeeCCEEEEecCCCCEE---EEC--------------CC-cccccEEEEcCCCccc
Confidence            0000 0011 24589999999999997766543   222              12 6889999999997654

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=94.14  E-value=0.07  Score=44.45  Aligned_cols=31  Identities=23%  Similarity=0.502  Sum_probs=28.9

Q ss_pred             EEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           93 VVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        93 VvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      |+|+|+|..|+..|+.|++. |.+|.++.+..
T Consensus         1 I~I~G~GaiG~~~a~~L~~~-g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQA-GHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHT-TCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHHC-CCceEEEEccc
Confidence            68999999999999999998 99999999874

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=93.97  E-value=0.067  Score=45.24  Aligned_cols=31  Identities=26%  Similarity=0.412  Sum_probs=29.1

Q ss_pred             EEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           93 VVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        93 VvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      |.|+|+|..|.++|..|+++ |.+|.|..+..
T Consensus         2 I~ViGaG~~G~AlA~~la~~-g~~V~l~~~~~   32 (157)
T PF01210_consen    2 IAVIGAGNWGTALAALLADN-GHEVTLWGRDE   32 (157)
T ss_dssp             EEEESSSHHHHHHHHHHHHC-TEEEEEETSCH
T ss_pred             EEEECcCHHHHHHHHHHHHc-CCEEEEEeccH
Confidence            79999999999999999999 99999998863

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=93.92  E-value=0.22  Score=49.09  Aligned_cols=47  Identities=11%  Similarity=0.018  Sum_probs=32.4

Q ss_pred             cCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEE--cCEEEEcCCCCC
Q 018414          182 ARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVME--AKVVVSSCGHDG  242 (356)
Q Consensus       182 ~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~--Ak~VI~AtGg~~  242 (356)
                      ++.|++++.+++|+.+..+++.+... ..             ++..+++  +|+||+|||+..
T Consensus        55 ~~~gv~~~~~~~V~~id~~~~~v~~~-~~-------------~~~~~~~~~yd~lIiATG~~p  103 (427)
T TIGR03385        55 KKRGIDVKTNHEVIEVNDERQTVVVR-NN-------------KTNETYEESYDYLILSPGASP  103 (427)
T ss_pred             HhcCCeEEecCEEEEEECCCCEEEEE-EC-------------CCCCEEecCCCEEEECCCCCC
Confidence            35699999899999987666543321 11             0124566  999999999754

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>COG4716 Myosin-crossreactive antigen [Function unknown]

Probab=93.84  E-value=0.12  Score=49.52  Aligned_cols=39  Identities=31%  Similarity=0.453  Sum_probs=33.3

Q ss_pred             ccEEEECCCHHHHHHHHHhhcC---CCCeEEEEeccCCCCCc
Q 018414           91 TDVVVVGAGSAGLSCAYELSKN---PNIQIAIIEQSVSPGGG  129 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~---~G~~V~llEk~~~~Gg~  129 (356)
                      -.+-|||+|.|||++|..|-+.   .|.++.|+|.-+..||+
T Consensus        23 KsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGS   64 (587)
T COG4716          23 KSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGS   64 (587)
T ss_pred             ceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCC
Confidence            4688999999999999999873   28899999998877764

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=93.61  E-value=0.098  Score=45.38  Aligned_cols=31  Identities=26%  Similarity=0.483  Sum_probs=27.5

Q ss_pred             EEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           93 VVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        93 VvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      |.|||+|..|...|..++.. |++|+++|.+.
T Consensus         2 V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~~~   32 (180)
T PF02737_consen    2 VAVIGAGTMGRGIAALFARA-GYEVTLYDRSP   32 (180)
T ss_dssp             EEEES-SHHHHHHHHHHHHT-TSEEEEE-SSH
T ss_pred             EEEEcCCHHHHHHHHHHHhC-CCcEEEEECCh
Confidence            79999999999999999999 99999999874

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.55  E-value=0.089  Score=52.80  Aligned_cols=33  Identities=24%  Similarity=0.433  Sum_probs=30.1

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      -.|+|||+|.+|+.+|..|+++ |.+|+++|+.+
T Consensus        17 ~~v~viG~G~~G~~~A~~L~~~-G~~V~~~d~~~   49 (480)
T PRK01438         17 LRVVVAGLGVSGFAAADALLEL-GARVTVVDDGD   49 (480)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCc
Confidence            3699999999999999999999 99999999654

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=93.46  E-value=0.05  Score=49.53  Aligned_cols=33  Identities=42%  Similarity=0.731  Sum_probs=28.9

Q ss_pred             EEEECCCHHHHHHHHHhhc-CCCCeEEEEeccCC
Q 018414           93 VVVVGAGSAGLSCAYELSK-NPNIQIAIIEQSVS  125 (356)
Q Consensus        93 VvIIGgG~aGl~aA~~La~-~~G~~V~llEk~~~  125 (356)
                      .+|||||+||.+||-.|+. .|..+++|+...+.
T Consensus         2 fivvgggiagvscaeqla~~~psa~illitass~   35 (334)
T KOG2755|consen    2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSF   35 (334)
T ss_pred             eEEEcCccccccHHHHHHhhCCCCcEEEEeccHH
Confidence            5899999999999999998 46889999987754

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=93.44  E-value=0.15  Score=51.09  Aligned_cols=34  Identities=21%  Similarity=0.336  Sum_probs=30.8

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .-.|+|||+|.+|+-.|..|++. +.+|+++.+..
T Consensus       204 gk~VvVVG~G~Sg~diA~~L~~~-a~~V~l~~r~~  237 (461)
T PLN02172        204 NEVVVVIGNFASGADISRDIAKV-AKEVHIASRAS  237 (461)
T ss_pred             CCEEEEECCCcCHHHHHHHHHHh-CCeEEEEEeec
Confidence            35799999999999999999998 89999998864

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.37  E-value=0.095  Score=52.24  Aligned_cols=34  Identities=24%  Similarity=0.430  Sum_probs=30.7

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSP  126 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~  126 (356)
                      .|+|||.|++|+++|+.|.+. |++|++.|+...+
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~-G~~V~~~D~~~~~   35 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQ-GWEVVVSDRNDSP   35 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHC-CCEEEEECCCCch
Confidence            489999999999999999999 9999999987543

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=93.20  E-value=0.11  Score=46.81  Aligned_cols=32  Identities=31%  Similarity=0.617  Sum_probs=30.4

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      +++|||+|..|...|..|.+. |..|+++|+..
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~-g~~Vv~Id~d~   33 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEE-GHNVVLIDRDE   33 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhC-CCceEEEEcCH
Confidence            689999999999999999999 99999999875

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=93.03  E-value=0.14  Score=44.61  Aligned_cols=34  Identities=32%  Similarity=0.579  Sum_probs=28.8

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .-.|+|||+|.++.-+|+.|++. |.+|+++-|.+
T Consensus       167 ~k~V~VVG~G~SA~d~a~~l~~~-g~~V~~~~R~~  200 (203)
T PF13738_consen  167 GKRVVVVGGGNSAVDIAYALAKA-GKSVTLVTRSP  200 (203)
T ss_dssp             TSEEEEE--SHHHHHHHHHHTTT-CSEEEEEESS-
T ss_pred             CCcEEEEcChHHHHHHHHHHHhh-CCEEEEEecCC
Confidence            36799999999999999999999 99999998875

...

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=92.86  E-value=1.9  Score=41.94  Aligned_cols=63  Identities=14%  Similarity=0.239  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHc--CCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414          170 ALFTSTIMSKLLA--RPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       170 ~~~~~~l~~~~~~--~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~  241 (356)
                      .++...|+++-..  ++++.++..+++..++...+.-.-+.+..      ..   .++..++..|.||+|||-.
T Consensus       275 ~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~~~l~~~~------~~---~~~~~t~~~D~vIlATGY~  339 (436)
T COG3486         275 EEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGRYRLTLRH------HE---TGELETVETDAVILATGYR  339 (436)
T ss_pred             HHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCceEEEEEee------cc---CCCceEEEeeEEEEecccc
Confidence            3455566665432  46799999999999988754322233221      11   2356889999999999944

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=92.37  E-value=1.3  Score=43.37  Aligned_cols=116  Identities=16%  Similarity=0.169  Sum_probs=67.8

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~  169 (356)
                      +..|||+|+|-+|++..-.|-.. -++|+||......         ++..++...              ..+    ..+.
T Consensus        55 Kk~vVVLGsGW~a~S~lk~ldts-~YdV~vVSPRnyF---------lFTPLLpS~--------------~vG----Tve~  106 (491)
T KOG2495|consen   55 KKRVVVLGSGWGAISLLKKLDTS-LYDVTVVSPRNYF---------LFTPLLPST--------------TVG----TVEL  106 (491)
T ss_pred             CceEEEEcCchHHHHHHHhcccc-ccceEEeccccce---------EEeeccCCc--------------ccc----ceee
Confidence            46899999999999999998877 8999999876531         111111000              000    1123


Q ss_pred             HHHHHHHHHHHHcCC-CcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          170 ALFTSTIMSKLLARP-NVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       170 ~~~~~~l~~~~~~~~-gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      +.+.+.+..-..+.. +++++.. +.+++..++..|..-....       +.  ......+..|++|+|+|+...
T Consensus       107 rSIvEPIr~i~r~k~~~~~y~eA-ec~~iDp~~k~V~~~s~t~-------~~--~~~e~~i~YDyLViA~GA~~~  171 (491)
T KOG2495|consen  107 RSIVEPIRAIARKKNGEVKYLEA-ECTKIDPDNKKVHCRSLTA-------DS--SDKEFVIGYDYLVIAVGAEPN  171 (491)
T ss_pred             hhhhhhHHHHhhccCCCceEEec-ccEeecccccEEEEeeecc-------CC--CcceeeecccEEEEeccCCCC
Confidence            444444444333333 4555544 7777776666544222211       00  012467899999999998653

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=92.36  E-value=0.2  Score=47.30  Aligned_cols=33  Identities=15%  Similarity=0.295  Sum_probs=30.5

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      ..|+|||+|..|...|..|++. |.+|+++.++.
T Consensus         6 m~I~IiG~GaiG~~lA~~L~~~-g~~V~~~~r~~   38 (313)
T PRK06249          6 PRIGIIGTGAIGGFYGAMLARA-GFDVHFLLRSD   38 (313)
T ss_pred             cEEEEECCCHHHHHHHHHHHHC-CCeEEEEEeCC
Confidence            4699999999999999999999 99999999864

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=92.09  E-value=0.47  Score=46.12  Aligned_cols=98  Identities=14%  Similarity=0.255  Sum_probs=62.4

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCC---CCeEE-EEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEE
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNP---NIQIA-IIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVI  166 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~---G~~V~-llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~  166 (356)
                      -.|-|||.|.-|..+|+.|++..   |.+|. |+|....                    ..+.|                
T Consensus       348 ~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~n--------------------m~kiL----------------  391 (659)
T KOG1346|consen  348 QSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYN--------------------MEKIL----------------  391 (659)
T ss_pred             ceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCC--------------------hhhhh----------------
Confidence            57999999999999999998741   33332 2221100                    00000                


Q ss_pred             echHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          167 KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       167 ~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                        ...+.++-+++++ +.||.++.+..|..+....+.+. ++.+              ++.+++.|.||+|+|-..
T Consensus       392 --Peyls~wt~ekir-~~GV~V~pna~v~sv~~~~~nl~-lkL~--------------dG~~l~tD~vVvavG~eP  449 (659)
T KOG1346|consen  392 --PEYLSQWTIEKIR-KGGVDVRPNAKVESVRKCCKNLV-LKLS--------------DGSELRTDLVVVAVGEEP  449 (659)
T ss_pred             --HHHHHHHHHHHHH-hcCceeccchhhhhhhhhccceE-EEec--------------CCCeeeeeeEEEEecCCC
Confidence              1223344566665 67999999988888776554332 3333              257899999999999543

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=92.01  E-value=0.17  Score=44.17  Aligned_cols=32  Identities=25%  Similarity=0.401  Sum_probs=26.4

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .|.|||.|-.|+.+|..||+. |++|+.+|.+.
T Consensus         2 ~I~ViGlGyvGl~~A~~lA~~-G~~V~g~D~~~   33 (185)
T PF03721_consen    2 KIAVIGLGYVGLPLAAALAEK-GHQVIGVDIDE   33 (185)
T ss_dssp             EEEEE--STTHHHHHHHHHHT-TSEEEEE-S-H
T ss_pred             EEEEECCCcchHHHHHHHHhC-CCEEEEEeCCh
Confidence            589999999999999999999 99999999874

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=91.94  E-value=0.15  Score=47.75  Aligned_cols=36  Identities=28%  Similarity=0.454  Sum_probs=30.5

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcC-CCCeEEEEeccC
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSV  124 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~-~G~~V~llEk~~  124 (356)
                      .++.|+|||||.+|+..|..+.++ +.-+|.|||-..
T Consensus        38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e   74 (446)
T KOG3851|consen   38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE   74 (446)
T ss_pred             cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence            469999999999999999999873 355899999754

>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.78  E-value=0.18  Score=48.64  Aligned_cols=40  Identities=25%  Similarity=0.340  Sum_probs=36.2

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG  129 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~  129 (356)
                      .+|||||||.|..-...|.+.++. |.+|+=+|.++.-||.
T Consensus         7 ~~fDvVViGTGlpESilAAAcSrs-G~sVLHlDsn~yYGg~   46 (547)
T KOG4405|consen    7 EEFDVVVIGTGLPESILAAACSRS-GSSVLHLDSNEYYGGN   46 (547)
T ss_pred             hhccEEEEcCCCcHHHHHHHhhhc-CCceEeccCccccCCc
Confidence            369999999999999999999999 9999999999887764

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=91.71  E-value=0.81  Score=46.67  Aligned_cols=34  Identities=29%  Similarity=0.422  Sum_probs=29.3

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .-.|+|||+|.+|+=.|..|++. ..+|.+.-|..
T Consensus       183 gKrVlVVG~g~Sg~DIa~el~~~-a~~v~~s~R~~  216 (531)
T PF00743_consen  183 GKRVLVVGGGNSGADIAVELSRV-AKKVYLSTRRG  216 (531)
T ss_dssp             TSEEEEESSSHHHHHHHHHHTTT-SCCEEEECC--
T ss_pred             CCEEEEEeCCHhHHHHHHHHHHh-cCCeEEEEecc
Confidence            35799999999999999999998 88999988764

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=91.70  E-value=0.94  Score=47.11  Aligned_cols=107  Identities=15%  Similarity=0.188  Sum_probs=65.5

Q ss_pred             ccEEEECCCHHHHHHHHHhhc---CCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEe
Q 018414           91 TDVVVVGAGSAGLSCAYELSK---NPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIK  167 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~---~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~  167 (356)
                      ..++|||-|++|..+..++.+   . -+.++++-..+.+.-..    -+.+..+....                      
T Consensus         4 ~klvvvGnGmag~r~iEell~~~~~-~~~iTvfg~Ep~~nY~R----i~Ls~vl~~~~----------------------   56 (793)
T COG1251           4 QKLVIIGNGMAGHRTIEELLESAPD-LYDITVFGEEPRPNYNR----ILLSSVLAGEK----------------------   56 (793)
T ss_pred             eeEEEEecccchhhHHHHHHhcCcc-cceEEEeccCCCccccc----eeeccccCCCc----------------------
Confidence            478999999999999988877   3 56788876554332100    00111111100                      


Q ss_pred             chHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          168 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       168 ~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      ...++...-.+.. +++|++++.+.+|+.|..++..|   ...              .+.++..|.+|+|||++.
T Consensus        57 ~~edi~l~~~dwy-~~~~i~L~~~~~v~~idr~~k~V---~t~--------------~g~~~~YDkLilATGS~p  113 (793)
T COG1251          57 TAEDISLNRNDWY-EENGITLYTGEKVIQIDRANKVV---TTD--------------AGRTVSYDKLIIATGSYP  113 (793)
T ss_pred             cHHHHhccchhhH-HHcCcEEEcCCeeEEeccCcceE---Ecc--------------CCcEeecceeEEecCccc
Confidence            0111111111222 36799999999999998766543   222              247889999999999776

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.67  E-value=0.26  Score=48.92  Aligned_cols=33  Identities=33%  Similarity=0.480  Sum_probs=30.8

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      -.|+|+|+|..|+.+|..|++. |++|+++|+..
T Consensus         6 k~v~iiG~g~~G~~~A~~l~~~-G~~V~~~d~~~   38 (450)
T PRK14106          6 KKVLVVGAGVSGLALAKFLKKL-GAKVILTDEKE   38 (450)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCc
Confidence            5799999999999999999999 99999999864

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=91.59  E-value=0.25  Score=46.61  Aligned_cols=33  Identities=24%  Similarity=0.375  Sum_probs=30.4

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      ..|+|||+|..|...|..|++. |.+|+++.|..
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~-G~~V~lv~r~~   35 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARA-GLPVRLILRDR   35 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhC-CCCeEEEEech
Confidence            4699999999999999999999 99999999863

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=91.56  E-value=0.23  Score=46.86  Aligned_cols=32  Identities=19%  Similarity=0.390  Sum_probs=30.2

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      +|.|||+|..|...|..|+++ |++|+++|+..
T Consensus         4 ~V~VIG~G~mG~~iA~~la~~-G~~V~v~d~~~   35 (308)
T PRK06129          4 SVAIIGAGLIGRAWAIVFARA-GHEVRLWDADP   35 (308)
T ss_pred             EEEEECccHHHHHHHHHHHHC-CCeeEEEeCCH
Confidence            699999999999999999999 99999999875

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=91.54  E-value=0.24  Score=38.72  Aligned_cols=33  Identities=24%  Similarity=0.356  Sum_probs=30.0

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEecc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~  123 (356)
                      ...|+|||||..|..-+..|.+. |.+|+|+.+.
T Consensus         7 ~~~vlVvGgG~va~~k~~~Ll~~-gA~v~vis~~   39 (103)
T PF13241_consen    7 GKRVLVVGGGPVAARKARLLLEA-GAKVTVISPE   39 (103)
T ss_dssp             T-EEEEEEESHHHHHHHHHHCCC-TBEEEEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-CCEEEEECCc
Confidence            36799999999999999999999 9999999877

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=91.11  E-value=0.32  Score=43.13  Aligned_cols=32  Identities=34%  Similarity=0.453  Sum_probs=29.7

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEecc
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~  123 (356)
                      -.|+|||||.+|..-+..|.+. |.+|+|+...
T Consensus        10 k~vlVvGgG~va~rk~~~Ll~~-ga~VtVvsp~   41 (205)
T TIGR01470        10 RAVLVVGGGDVALRKARLLLKA-GAQLRVIAEE   41 (205)
T ss_pred             CeEEEECcCHHHHHHHHHHHHC-CCEEEEEcCC
Confidence            4799999999999999999999 9999999875

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=90.85  E-value=0.4  Score=39.37  Aligned_cols=33  Identities=30%  Similarity=0.486  Sum_probs=29.8

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCe-EEEEecc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQ-IAIIEQS  123 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~-V~llEk~  123 (356)
                      ...++|||+|.+|-.+++.|... |.+ |+|+-|.
T Consensus        12 ~~~vlviGaGg~ar~v~~~L~~~-g~~~i~i~nRt   45 (135)
T PF01488_consen   12 GKRVLVIGAGGAARAVAAALAAL-GAKEITIVNRT   45 (135)
T ss_dssp             TSEEEEESSSHHHHHHHHHHHHT-TSSEEEEEESS
T ss_pred             CCEEEEECCHHHHHHHHHHHHHc-CCCEEEEEECC
Confidence            46899999999999999999999 877 9999876

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=90.80  E-value=0.37  Score=42.56  Aligned_cols=34  Identities=21%  Similarity=0.483  Sum_probs=31.0

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCC-eEEEEecc
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQS  123 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~  123 (356)
                      ....|+|||+|..|...|..|++. |. +++|+|..
T Consensus        20 ~~~~V~IvG~GglGs~ia~~La~~-Gvg~i~lvD~D   54 (200)
T TIGR02354        20 EQATVAICGLGGLGSNVAINLARA-GIGKLILVDFD   54 (200)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHc-CCCEEEEECCC
Confidence            357899999999999999999999 88 69999987

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=90.71  E-value=0.4  Score=40.62  Aligned_cols=32  Identities=19%  Similarity=0.362  Sum_probs=29.0

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEec
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQ  122 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk  122 (356)
                      .-.|+|||||..|..-+..|.+. |.+|+||..
T Consensus        13 ~~~vlVvGGG~va~rka~~Ll~~-ga~V~VIsp   44 (157)
T PRK06719         13 NKVVVIIGGGKIAYRKASGLKDT-GAFVTVVSP   44 (157)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-CCEEEEEcC
Confidence            46799999999999999999999 999999954

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=90.69  E-value=0.39  Score=41.01  Aligned_cols=33  Identities=24%  Similarity=0.324  Sum_probs=29.0

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      ..|+|+|+|.+|..|+..|... |.+|+++|...
T Consensus        21 ~~vvv~G~G~vg~gA~~~~~~l-Ga~v~~~d~~~   53 (168)
T PF01262_consen   21 AKVVVTGAGRVGQGAAEIAKGL-GAEVVVPDERP   53 (168)
T ss_dssp             -EEEEESTSHHHHHHHHHHHHT-T-EEEEEESSH
T ss_pred             eEEEEECCCHHHHHHHHHHhHC-CCEEEeccCCH
Confidence            6899999999999999999999 99999999763

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=90.60  E-value=0.37  Score=45.05  Aligned_cols=33  Identities=27%  Similarity=0.405  Sum_probs=30.6

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS  125 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~  125 (356)
                      .|.|||+|..|...|..+++. |++|+++|..+.
T Consensus         7 ~V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~~~~   39 (286)
T PRK07819          7 RVGVVGAGQMGAGIAEVCARA-GVDVLVFETTEE   39 (286)
T ss_pred             EEEEEcccHHHHHHHHHHHhC-CCEEEEEECCHH
Confidence            699999999999999999999 999999998753

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=90.51  E-value=0.34  Score=45.15  Aligned_cols=32  Identities=28%  Similarity=0.443  Sum_probs=29.9

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .|.|||+|..|...|..++++ |.+|+++|...
T Consensus         5 kIaViGaG~mG~~iA~~la~~-G~~V~l~d~~~   36 (287)
T PRK08293          5 NVTVAGAGVLGSQIAFQTAFH-GFDVTIYDISD   36 (287)
T ss_pred             EEEEECCCHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence            599999999999999999999 99999999864

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=90.35  E-value=0.48  Score=37.37  Aligned_cols=31  Identities=29%  Similarity=0.561  Sum_probs=28.0

Q ss_pred             EEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           93 VVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        93 VvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      |+|+|.|..|...+..|.+. +.+|+++|+.+
T Consensus         1 vvI~G~g~~~~~i~~~L~~~-~~~vvvid~d~   31 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEG-GIDVVVIDRDP   31 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHT-TSEEEEEESSH
T ss_pred             eEEEcCCHHHHHHHHHHHhC-CCEEEEEECCc
Confidence            69999999999999999997 88999999985

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=90.33  E-value=0.39  Score=42.49  Aligned_cols=33  Identities=30%  Similarity=0.409  Sum_probs=29.9

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEecc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~  123 (356)
                      ...|+|||||-.|...+..|.+. |.+|+|+++.
T Consensus        10 ~k~vLVIGgG~va~~ka~~Ll~~-ga~V~VIs~~   42 (202)
T PRK06718         10 NKRVVIVGGGKVAGRRAITLLKY-GAHIVVISPE   42 (202)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCeEEEEcCC
Confidence            45899999999999999999999 9999999864

>TIGR00518 alaDH alanine dehydrogenase

Probab=90.12  E-value=0.4  Score=46.57  Aligned_cols=34  Identities=21%  Similarity=0.401  Sum_probs=30.9

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      ..+|+|||+|.+|+.+|..|... |.+|+++++..
T Consensus       167 ~~~VlViGaG~vG~~aa~~a~~l-Ga~V~v~d~~~  200 (370)
T TIGR00518       167 PGDVTIIGGGVVGTNAAKMANGL-GATVTILDINI  200 (370)
T ss_pred             CceEEEEcCCHHHHHHHHHHHHC-CCeEEEEECCH
Confidence            46799999999999999999999 99999999863

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=89.98  E-value=0.48  Score=43.78  Aligned_cols=35  Identities=31%  Similarity=0.449  Sum_probs=31.6

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCC-CeEEEEeccC
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPN-IQIAIIEQSV  124 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G-~~V~llEk~~  124 (356)
                      ....|+|||.|..|..+|..|++. | .+++|+|...
T Consensus        29 ~~s~VlVvG~GGVGs~vae~Lar~-GVg~itLiD~D~   64 (268)
T PRK15116         29 ADAHICVVGIGGVGSWAAEALART-GIGAITLIDMDD   64 (268)
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHc-CCCEEEEEeCCE
Confidence            457899999999999999999999 7 6899999774

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=89.94  E-value=0.39  Score=44.96  Aligned_cols=30  Identities=23%  Similarity=0.391  Sum_probs=28.5

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEec
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQ  122 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk  122 (356)
                      .|.|||+|..|...|..|++. |.+|+++++
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~-g~~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEA-GRDVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHC-CCceEEEec
Confidence            489999999999999999999 999999998

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=89.93  E-value=0.41  Score=44.65  Aligned_cols=31  Identities=16%  Similarity=0.414  Sum_probs=29.0

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEecc
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~  123 (356)
                      .|.|||+|..|...|..|++. |.+|+++++.
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~-g~~V~~~~r~   32 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQA-GHDVTLVARR   32 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCeEEEEECC
Confidence            489999999999999999999 9999999984

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=89.66  E-value=0.45  Score=44.39  Aligned_cols=32  Identities=31%  Similarity=0.523  Sum_probs=29.9

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .|.|||+|..|...|..|+++ |++|+++|++.
T Consensus         3 ~V~VIG~G~mG~~iA~~la~~-G~~V~~~d~~~   34 (288)
T PRK09260          3 KLVVVGAGVMGRGIAYVFAVS-GFQTTLVDIKQ   34 (288)
T ss_pred             EEEEECccHHHHHHHHHHHhC-CCcEEEEeCCH
Confidence            489999999999999999999 99999999874

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=89.56  E-value=3.5  Score=44.89  Aligned_cols=58  Identities=17%  Similarity=0.125  Sum_probs=38.6

Q ss_pred             CCCcEEEcCeEEEEEEEe-CCeEEEEEEcceee----ecc--cCCC----------CCCCCeEEEcCEEEEcCCC
Q 018414          183 RPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALV----SMN--HDTQ----------SCMDPNVMEAKVVVSSCGH  240 (356)
Q Consensus       183 ~~gv~i~~~~~v~~i~~~-~~~v~gv~~~~~~~----~~~--~~~~----------~~g~~~~i~Ak~VI~AtGg  240 (356)
                      +.||+|.+.+...+++.+ +|++.++.+.....    ...  ..++          ..+...++.||.||+|.|-
T Consensus       652 eEGV~f~~~~~P~~i~~d~~g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~  726 (1028)
T PRK06567        652 ALGVDFKENMQPLRINVDKYGHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGI  726 (1028)
T ss_pred             HcCcEEEecCCcEEEEecCCCeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEeccc
Confidence            569999999999999875 57888887753210    000  0000          0113468999999999993

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=89.47  E-value=0.43  Score=39.09  Aligned_cols=33  Identities=24%  Similarity=0.653  Sum_probs=29.3

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~  124 (356)
                      ..|+|||+|..|...|..|++. |. +++|+|...
T Consensus         3 ~~v~iiG~G~vGs~va~~L~~~-Gv~~i~lvD~d~   36 (135)
T PF00899_consen    3 KRVLIIGAGGVGSEVAKNLARS-GVGKITLVDDDI   36 (135)
T ss_dssp             -EEEEESTSHHHHHHHHHHHHH-TTSEEEEEESSB
T ss_pred             CEEEEECcCHHHHHHHHHHHHh-CCCceeecCCcc
Confidence            5799999999999999999998 77 799999874

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=89.14  E-value=0.55  Score=44.36  Aligned_cols=32  Identities=31%  Similarity=0.516  Sum_probs=29.0

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCC--CeEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPN--IQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G--~~V~llEk~~  124 (356)
                      .|.|||+|..|.++|+.|++. |  ..+.++|+..
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~-g~~~ev~l~D~~~   35 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLR-GLASEIVLVDINK   35 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHc-CCCCEEEEEECCc
Confidence            589999999999999999998 7  5899999865

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=89.14  E-value=0.51  Score=44.88  Aligned_cols=32  Identities=9%  Similarity=0.232  Sum_probs=29.9

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .|.|||+|..|...|..++.. |++|+++|..+
T Consensus         9 ~VaVIGaG~MG~giA~~~a~a-G~~V~l~D~~~   40 (321)
T PRK07066          9 TFAAIGSGVIGSGWVARALAH-GLDVVAWDPAP   40 (321)
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            599999999999999999999 99999999864

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=88.96  E-value=0.39  Score=44.90  Aligned_cols=34  Identities=24%  Similarity=0.337  Sum_probs=31.3

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEecc
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~  123 (356)
                      ..-+|+|||||.+|.-+|.-+... |.+|+++|.+
T Consensus       167 ~~~kv~iiGGGvvgtnaAkiA~gl-gA~Vtild~n  200 (371)
T COG0686         167 LPAKVVVLGGGVVGTNAAKIAIGL-GADVTILDLN  200 (371)
T ss_pred             CCccEEEECCccccchHHHHHhcc-CCeeEEEecC
Confidence            357899999999999999999888 9999999987

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=88.90  E-value=0.52  Score=44.03  Aligned_cols=32  Identities=25%  Similarity=0.403  Sum_probs=29.9

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .|.|||+|..|...|..|+++ |.+|+++|+..
T Consensus         5 ~I~ViGaG~mG~~iA~~la~~-G~~V~l~d~~~   36 (291)
T PRK06035          5 VIGVVGSGVMGQGIAQVFART-GYDVTIVDVSE   36 (291)
T ss_pred             EEEEECccHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence            599999999999999999999 99999999875

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=88.90  E-value=0.71  Score=43.89  Aligned_cols=34  Identities=18%  Similarity=0.427  Sum_probs=30.2

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccCC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSVS  125 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~~  125 (356)
                      ..|.|||+|..|...|+.++.. |+ ++.|+|..+.
T Consensus         7 ~KI~IIGaG~vG~~ia~~la~~-gl~~i~LvDi~~~   41 (321)
T PTZ00082          7 RKISLIGSGNIGGVMAYLIVLK-NLGDVVLFDIVKN   41 (321)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCCeEEEEeCCCc
Confidence            5799999999999999999988 75 8999997653

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=88.88  E-value=0.48  Score=47.83  Aligned_cols=34  Identities=24%  Similarity=0.334  Sum_probs=30.5

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      ...|+|+|+|++|+.++..+... |.+|.++|.++
T Consensus       165 g~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~  198 (509)
T PRK09424        165 PAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRP  198 (509)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            46899999999999999988888 99999999764

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=88.82  E-value=0.59  Score=43.66  Aligned_cols=33  Identities=24%  Similarity=0.271  Sum_probs=30.4

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      ..|.|||+|..|...|..|+++ |.+|+++|+..
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~-G~~V~l~d~~~   37 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALA-GYDVLLNDVSA   37 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCH
Confidence            3699999999999999999999 99999999864

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=88.66  E-value=0.65  Score=44.52  Aligned_cols=34  Identities=24%  Similarity=0.561  Sum_probs=31.1

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~  124 (356)
                      ...|+|||+|..|..+|..|++. |. +++|+|...
T Consensus        24 ~~~VlVvG~GglGs~va~~La~a-Gvg~i~lvD~D~   58 (339)
T PRK07688         24 EKHVLIIGAGALGTANAEMLVRA-GVGKVTIVDRDY   58 (339)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCc
Confidence            47899999999999999999999 88 899999863

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=88.40  E-value=0.67  Score=44.41  Aligned_cols=34  Identities=29%  Similarity=0.553  Sum_probs=30.9

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~  124 (356)
                      ...|+|||+|..|..+|..|++. |. +++|+|...
T Consensus        24 ~~~VlIiG~GglGs~va~~La~a-Gvg~i~lvD~D~   58 (338)
T PRK12475         24 EKHVLIVGAGALGAANAEALVRA-GIGKLTIADRDY   58 (338)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCc
Confidence            46899999999999999999999 87 899999874

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=88.34  E-value=0.83  Score=43.32  Aligned_cols=34  Identities=38%  Similarity=0.642  Sum_probs=30.0

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCC--eEEEEeccC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQSV  124 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~--~V~llEk~~  124 (356)
                      ...|.|||+|..|..+|+.|+.. +.  .+.|+|...
T Consensus         6 ~~ki~iiGaG~vG~~~a~~l~~~-~~~~el~L~D~~~   41 (315)
T PRK00066          6 HNKVVLVGDGAVGSSYAYALVNQ-GIADELVIIDINK   41 (315)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhc-CCCCEEEEEeCCC
Confidence            46899999999999999999988 66  799999754

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=88.24  E-value=0.66  Score=45.65  Aligned_cols=34  Identities=26%  Similarity=0.426  Sum_probs=30.5

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .-.|+|+|.|+.|+.+|..|... |.+|+++|..+
T Consensus       202 GktVvViG~G~IG~~va~~ak~~-Ga~ViV~d~d~  235 (413)
T cd00401         202 GKVAVVAGYGDVGKGCAQSLRGQ-GARVIVTEVDP  235 (413)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECCh
Confidence            35799999999999999999888 99999999864

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=87.96  E-value=0.6  Score=43.34  Aligned_cols=32  Identities=22%  Similarity=0.335  Sum_probs=29.8

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .|.|||+|..|...|..+++. |.+|+++|..+
T Consensus         5 kI~VIG~G~mG~~ia~~la~~-g~~V~~~d~~~   36 (282)
T PRK05808          5 KIGVIGAGTMGNGIAQVCAVA-GYDVVMVDISD   36 (282)
T ss_pred             EEEEEccCHHHHHHHHHHHHC-CCceEEEeCCH
Confidence            599999999999999999999 99999999764

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=87.88  E-value=0.7  Score=44.95  Aligned_cols=33  Identities=30%  Similarity=0.525  Sum_probs=30.2

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCC-CeEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPN-IQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G-~~V~llEk~~  124 (356)
                      .+|+|||+|-.|..+|..|+++ + .+|++.+|..
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~-~d~~V~iAdRs~   35 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQN-GDGEVTIADRSK   35 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhC-CCceEEEEeCCH
Confidence            3799999999999999999998 6 8999999973

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=87.87  E-value=0.84  Score=40.29  Aligned_cols=34  Identities=26%  Similarity=0.549  Sum_probs=30.8

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~  124 (356)
                      +..|+|||.|..|..+|..|++. |. +++++|...
T Consensus        21 ~~~VlviG~GglGs~ia~~La~~-Gv~~i~lvD~d~   55 (202)
T TIGR02356        21 NSHVLIIGAGGLGSPAALYLAGA-GVGTIVIVDDDH   55 (202)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHc-CCCeEEEecCCE
Confidence            57899999999999999999999 86 899999874

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=87.82  E-value=0.72  Score=43.06  Aligned_cols=32  Identities=31%  Similarity=0.479  Sum_probs=29.1

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCC-eEEEEecc
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQS  123 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~  123 (356)
                      ..|+|||+|.+|.++++.|++. |. +|+|++|.
T Consensus       128 k~vlIlGaGGaaraia~aL~~~-G~~~I~I~nR~  160 (284)
T PRK12549        128 ERVVQLGAGGAGAAVAHALLTL-GVERLTIFDVD  160 (284)
T ss_pred             CEEEEECCcHHHHHHHHHHHHc-CCCEEEEECCC
Confidence            5799999999999999999998 76 79999886

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=87.73  E-value=0.68  Score=44.13  Aligned_cols=32  Identities=25%  Similarity=0.405  Sum_probs=29.9

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .|.|||+|..|...|..|++. |++|.++++..
T Consensus         4 kI~IiG~G~mG~~~A~~L~~~-G~~V~~~~r~~   35 (341)
T PRK08229          4 RICVLGAGSIGCYLGGRLAAA-GADVTLIGRAR   35 (341)
T ss_pred             eEEEECCCHHHHHHHHHHHhc-CCcEEEEecHH
Confidence            699999999999999999999 99999999853

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=87.68  E-value=0.75  Score=41.41  Aligned_cols=34  Identities=26%  Similarity=0.483  Sum_probs=30.0

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCe---EEEEeccC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQ---IAIIEQSV  124 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~---V~llEk~~  124 (356)
                      +..++|+|+|.+|..+|..|.+. |.+   +.|+++..
T Consensus        25 ~~rvlvlGAGgAg~aiA~~L~~~-G~~~~~i~ivdr~g   61 (226)
T cd05311          25 EVKIVINGAGAAGIAIARLLLAA-GAKPENIVVVDSKG   61 (226)
T ss_pred             CCEEEEECchHHHHHHHHHHHHc-CcCcceEEEEeCCC
Confidence            45799999999999999999998 874   99999874

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=87.55  E-value=0.79  Score=43.27  Aligned_cols=32  Identities=22%  Similarity=0.572  Sum_probs=28.7

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~  124 (356)
                      .|.|||+|..|...|+.++.+ |. +|+++|...
T Consensus         3 KV~VIGaG~vG~~iA~~la~~-g~~~VvlvDi~~   35 (305)
T TIGR01763         3 KISVIGAGFVGATTAFRLAEK-ELADLVLLDVVE   35 (305)
T ss_pred             EEEEECcCHHHHHHHHHHHHc-CCCeEEEEeCCC
Confidence            689999999999999999997 65 899999853

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=87.16  E-value=0.95  Score=42.31  Aligned_cols=32  Identities=25%  Similarity=0.355  Sum_probs=29.9

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .|.|||+|..|...|..+++. |.+|.++|+..
T Consensus         6 ~V~vIG~G~mG~~iA~~l~~~-G~~V~~~d~~~   37 (295)
T PLN02545          6 KVGVVGAGQMGSGIAQLAAAA-GMDVWLLDSDP   37 (295)
T ss_pred             EEEEECCCHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence            599999999999999999999 99999999874

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=86.96  E-value=1  Score=37.09  Aligned_cols=31  Identities=29%  Similarity=0.583  Sum_probs=28.3

Q ss_pred             EEEECCCHHHHHHHHHhhcCCCC-eEEEEeccC
Q 018414           93 VVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (356)
Q Consensus        93 VvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~  124 (356)
                      |+|||.|..|...|..|++. |. +++++|...
T Consensus         2 VliiG~GglGs~ia~~L~~~-Gv~~i~ivD~d~   33 (143)
T cd01483           2 VLLVGLGGLGSEIALNLARS-GVGKITLIDFDT   33 (143)
T ss_pred             EEEECCCHHHHHHHHHHHHC-CCCEEEEEcCCC
Confidence            89999999999999999998 77 799999774

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=86.91  E-value=0.95  Score=38.96  Aligned_cols=31  Identities=26%  Similarity=0.497  Sum_probs=28.3

Q ss_pred             EEEECCCHHHHHHHHHhhcCCCC-eEEEEeccC
Q 018414           93 VVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (356)
Q Consensus        93 VvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~  124 (356)
                      |+|||+|..|...|..|++. |. +++++|...
T Consensus         2 VlViG~GglGs~ia~~La~~-Gvg~i~lvD~D~   33 (174)
T cd01487           2 VGIAGAGGLGSNIAVLLARS-GVGNLKLVDFDV   33 (174)
T ss_pred             EEEECcCHHHHHHHHHHHHc-CCCeEEEEeCCE
Confidence            89999999999999999999 88 499999874

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=86.62  E-value=0.91  Score=43.08  Aligned_cols=32  Identities=28%  Similarity=0.475  Sum_probs=29.5

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .|.|||+|..|...|..|++. |.+|.++.+..
T Consensus         2 kI~IiGaGa~G~ala~~L~~~-g~~V~l~~r~~   33 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSK-KISVNLWGRNH   33 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHC-CCeEEEEecCH
Confidence            489999999999999999999 99999999853

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=86.61  E-value=0.84  Score=44.20  Aligned_cols=32  Identities=19%  Similarity=0.359  Sum_probs=29.9

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .+.|||.|-.||..|..|++. |++|+.+|..+
T Consensus         2 kI~viGtGYVGLv~g~~lA~~-GHeVv~vDid~   33 (414)
T COG1004           2 KITVIGTGYVGLVTGACLAEL-GHEVVCVDIDE   33 (414)
T ss_pred             ceEEECCchHHHHHHHHHHHc-CCeEEEEeCCH
Confidence            589999999999999999999 99999999764

>TIGR02731 phytoene_desat phytoene desaturase

Probab=86.60  E-value=2.7  Score=41.72  Aligned_cols=61  Identities=11%  Similarity=0.067  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEe-CCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCC
Q 018414          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGH  240 (356)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg  240 (356)
                      ..+.+.|.+.+. +.|++|++++.|++|..+ ++++.++.+.++      ++   .+..++.||.||+|+..
T Consensus       213 ~~l~~~l~~~l~-~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~------~~---~~~~~~~a~~VI~a~p~  274 (453)
T TIGR02731       213 ERLCQPIVDYIT-SRGGEVRLNSRLKEIVLNEDGSVKHFVLADG------EG---QRRFEVTADAYVSAMPV  274 (453)
T ss_pred             HHHHHHHHHHHH-hcCCEEeCCCeeEEEEECCCCCEEEEEEecC------CC---CceeEEECCEEEEcCCH
Confidence            456677777775 569999999999999864 456777776421      00   01127899999999874

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=86.31  E-value=1.3  Score=37.98  Aligned_cols=34  Identities=29%  Similarity=0.367  Sum_probs=30.0

Q ss_pred             CcccEEEECCCH-HHHHHHHHhhcCCCCeEEEEecc
Q 018414           89 ADTDVVVVGAGS-AGLSCAYELSKNPNIQIAIIEQS  123 (356)
Q Consensus        89 ~~~DVvIIGgG~-aGl~aA~~La~~~G~~V~llEk~  123 (356)
                      ....|+|||+|- +|..+|..|.++ |.+|.++.+.
T Consensus        43 ~gk~vlViG~G~~~G~~~a~~L~~~-g~~V~v~~r~   77 (168)
T cd01080          43 AGKKVVVVGRSNIVGKPLAALLLNR-NATVTVCHSK   77 (168)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhhC-CCEEEEEECC
Confidence            457899999996 699999999998 9999999875

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=86.20  E-value=1.1  Score=39.84  Aligned_cols=35  Identities=23%  Similarity=0.462  Sum_probs=30.8

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCe-EEEEeccC
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQ-IAIIEQSV  124 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~-V~llEk~~  124 (356)
                      ....|+|||+|..|..+|..|++. |.. ++++|...
T Consensus        27 ~~~~V~ViG~GglGs~ia~~La~~-Gvg~i~lvD~D~   62 (212)
T PRK08644         27 KKAKVGIAGAGGLGSNIAVALARS-GVGNLKLVDFDV   62 (212)
T ss_pred             hCCCEEEECcCHHHHHHHHHHHHc-CCCeEEEEeCCE
Confidence            357899999999999999999998 775 99999873

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=86.08  E-value=1  Score=42.19  Aligned_cols=33  Identities=21%  Similarity=0.340  Sum_probs=29.1

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCe-EEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQ-IAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~-V~llEk~~  124 (356)
                      ..++|+|+|.+|.++|+.|++. |.+ |.|+.|..
T Consensus       127 k~vlI~GAGGagrAia~~La~~-G~~~V~I~~R~~  160 (289)
T PRK12548        127 KKLTVIGAGGAATAIQVQCALD-GAKEITIFNIKD  160 (289)
T ss_pred             CEEEEECCcHHHHHHHHHHHHC-CCCEEEEEeCCc
Confidence            4699999999999999999999 886 99998863

>PRK04148 hypothetical protein; Provisional

Probab=85.85  E-value=0.73  Score=37.89  Aligned_cols=32  Identities=19%  Similarity=0.360  Sum_probs=29.0

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      ..+++||.| .|...|..|++. |.+|+.+|.++
T Consensus        18 ~kileIG~G-fG~~vA~~L~~~-G~~ViaIDi~~   49 (134)
T PRK04148         18 KKIVELGIG-FYFKVAKKLKES-GFDVIVIDINE   49 (134)
T ss_pred             CEEEEEEec-CCHHHHHHHHHC-CCEEEEEECCH
Confidence            469999999 898889999999 99999999875

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=85.80  E-value=1  Score=44.46  Aligned_cols=33  Identities=21%  Similarity=0.349  Sum_probs=30.4

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      ..|.|||.|..|+..|..|+++ |++|+++|+..
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~-G~~V~~~D~~~   36 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASR-QKQVIGVDINQ   36 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhC-CCEEEEEeCCH
Confidence            3599999999999999999999 99999999864

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=85.68  E-value=0.98  Score=44.80  Aligned_cols=32  Identities=22%  Similarity=0.335  Sum_probs=29.5

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .++|+|+|..|.++|..|++. |.+|++.|+..
T Consensus         7 ~v~v~G~g~~G~s~a~~l~~~-G~~V~~~d~~~   38 (447)
T PRK02472          7 KVLVLGLAKSGYAAAKLLHKL-GANVTVNDGKP   38 (447)
T ss_pred             EEEEEeeCHHHHHHHHHHHHC-CCEEEEEcCCC
Confidence            589999999999999999999 99999999754

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=85.66  E-value=1.1  Score=42.28  Aligned_cols=32  Identities=22%  Similarity=0.504  Sum_probs=29.6

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .|.|||+|..|...|..|++. |++|+++|+..
T Consensus         6 ~I~vIGaG~mG~~iA~~l~~~-g~~V~~~d~~~   37 (311)
T PRK06130          6 NLAIIGAGTMGSGIAALFARK-GLQVVLIDVME   37 (311)
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCeEEEEECCH
Confidence            599999999999999999999 99999999764

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=85.48  E-value=1.1  Score=42.58  Aligned_cols=32  Identities=22%  Similarity=0.335  Sum_probs=29.9

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .|.|||+|..|...|..|++. |++|.++++..
T Consensus         6 ~I~iIG~G~mG~~ia~~L~~~-G~~V~~~~r~~   37 (328)
T PRK14618          6 RVAVLGAGAWGTALAVLAASK-GVPVRLWARRP   37 (328)
T ss_pred             eEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCH
Confidence            599999999999999999999 99999999863

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=85.24  E-value=1  Score=37.18  Aligned_cols=31  Identities=16%  Similarity=0.299  Sum_probs=26.9

Q ss_pred             EEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           93 VVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        93 VvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      ++|+|+|..+...+..++.. |++|+++|..+
T Consensus         1 L~I~GaG~va~al~~la~~l-g~~v~v~d~r~   31 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALL-GFRVTVVDPRP   31 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHC-TEEEEEEES-C
T ss_pred             CEEEeCcHHHHHHHHHHHhC-CCEEEEEcCCc
Confidence            58999999999999999889 99999999874

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=84.92  E-value=1  Score=44.32  Aligned_cols=32  Identities=22%  Similarity=0.334  Sum_probs=29.8

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .|.|||.|..|+..|..|++. |++|+++++..
T Consensus         2 kI~vIGlG~~G~~lA~~La~~-G~~V~~~d~~~   33 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADL-GHEVTGVDIDQ   33 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhc-CCeEEEEECCH
Confidence            489999999999999999999 99999999864

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=84.89  E-value=1.1  Score=41.97  Aligned_cols=31  Identities=19%  Similarity=0.467  Sum_probs=27.9

Q ss_pred             EEEECCCHHHHHHHHHhhcCCCC-eEEEEeccC
Q 018414           93 VVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (356)
Q Consensus        93 VvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~  124 (356)
                      |.|||+|..|..+|+.++.+ ++ +|+++|...
T Consensus         1 I~IIGaG~vG~~ia~~la~~-~l~eV~L~Di~e   32 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALK-ELGDVVLLDIVE   32 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhC-CCcEEEEEeCCC
Confidence            57999999999999999987 76 999999874

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=84.79  E-value=1.3  Score=41.69  Aligned_cols=32  Identities=28%  Similarity=0.453  Sum_probs=29.7

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .|.|||+|..|...|..|++. |.+|.++++..
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~-g~~V~~~~r~~   34 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARN-GHDVTLWARDP   34 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCEEEEEECCH
Confidence            599999999999999999999 99999999863

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=84.66  E-value=1.5  Score=41.26  Aligned_cols=33  Identities=21%  Similarity=0.303  Sum_probs=30.5

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      ..|.|||+|..|...|..|++. |++|.+.++..
T Consensus         5 m~I~iiG~G~~G~~lA~~l~~~-G~~V~~~~r~~   37 (308)
T PRK14619          5 KTIAILGAGAWGSTLAGLASAN-GHRVRVWSRRS   37 (308)
T ss_pred             CEEEEECccHHHHHHHHHHHHC-CCEEEEEeCCC
Confidence            4699999999999999999999 99999999874

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=84.53  E-value=1.5  Score=38.65  Aligned_cols=32  Identities=22%  Similarity=0.357  Sum_probs=29.7

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEecc
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~  123 (356)
                      ..++|+|.|-.|..+|..|.+. |.+|++.|+.
T Consensus        29 k~v~I~G~G~vG~~~A~~L~~~-G~~Vvv~D~~   60 (200)
T cd01075          29 KTVAVQGLGKVGYKLAEHLLEE-GAKLIVADIN   60 (200)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCC
Confidence            5699999999999999999999 9999999865

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=84.51  E-value=1.4  Score=41.46  Aligned_cols=32  Identities=34%  Similarity=0.601  Sum_probs=28.5

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCC--CeEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPN--IQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G--~~V~llEk~~  124 (356)
                      .|+|||+|.+|.++|+.|+.. |  .++.++|+..
T Consensus         2 kI~IIGaG~vG~~~a~~l~~~-g~~~ei~l~D~~~   35 (306)
T cd05291           2 KVVIIGAGHVGSSFAYSLVNQ-GIADELVLIDINE   35 (306)
T ss_pred             EEEEECCCHHHHHHHHHHHhc-CCCCEEEEEeCCc
Confidence            489999999999999999998 7  4799999864

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=84.29  E-value=1.5  Score=39.89  Aligned_cols=35  Identities=23%  Similarity=0.441  Sum_probs=29.4

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCC----------CCeEEEEeccC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNP----------NIQIAIIEQSV  124 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~----------G~~V~llEk~~  124 (356)
                      ...|+|||+|..|..++..|++.+          |.+++|+|...
T Consensus        11 ~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~   55 (244)
T TIGR03736        11 PVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT   55 (244)
T ss_pred             CCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence            579999999999999999999861          23889998764

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=84.12  E-value=1.7  Score=37.80  Aligned_cols=33  Identities=21%  Similarity=0.476  Sum_probs=29.3

Q ss_pred             cccEEEECC-CHHHHHHHHHhhcCCCCeEEEEecc
Q 018414           90 DTDVVVVGA-GSAGLSCAYELSKNPNIQIAIIEQS  123 (356)
Q Consensus        90 ~~DVvIIGg-G~aGl~aA~~La~~~G~~V~llEk~  123 (356)
                      ...++|+|+ |..|..+|..|++. |.+|.++.|+
T Consensus        28 ~~~vlVlGgtG~iG~~~a~~l~~~-g~~V~l~~R~   61 (194)
T cd01078          28 GKTAVVLGGTGPVGQRAAVLLARE-GARVVLVGRD   61 (194)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEcCC
Confidence            357999997 99999999999998 8999999765

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>TIGR00936 ahcY adenosylhomocysteinase

Probab=84.10  E-value=1.5  Score=43.09  Aligned_cols=34  Identities=24%  Similarity=0.267  Sum_probs=30.8

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .-.|+|+|.|..|..+|..|... |.+|+++|..+
T Consensus       195 Gk~VvViG~G~IG~~vA~~ak~~-Ga~ViV~d~dp  228 (406)
T TIGR00936       195 GKTVVVAGYGWCGKGIAMRARGM-GARVIVTEVDP  228 (406)
T ss_pred             cCEEEEECCCHHHHHHHHHHhhC-cCEEEEEeCCh
Confidence            45799999999999999999988 99999999765

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=83.95  E-value=1.8  Score=42.98  Aligned_cols=34  Identities=26%  Similarity=0.469  Sum_probs=30.5

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS  125 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~  125 (356)
                      ..++|+|.|.+|+++|..|+++ |.+|++.|....
T Consensus         6 ~~~~v~G~g~~G~~~a~~l~~~-g~~v~~~d~~~~   39 (445)
T PRK04308          6 KKILVAGLGGTGISMIAYLRKN-GAEVAAYDAELK   39 (445)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCCC
Confidence            3699999999999999999999 999999997543

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=83.95  E-value=1.6  Score=39.73  Aligned_cols=34  Identities=21%  Similarity=0.436  Sum_probs=30.2

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~  124 (356)
                      +..|+|||.|..|..+|..|++. |. +++|+|...
T Consensus        32 ~~~VliiG~GglGs~va~~La~~-Gvg~i~lvD~D~   66 (245)
T PRK05690         32 AARVLVVGLGGLGCAASQYLAAA-GVGTLTLVDFDT   66 (245)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCE
Confidence            57899999999999999999998 75 789998763

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=83.93  E-value=1.8  Score=41.59  Aligned_cols=43  Identities=14%  Similarity=0.113  Sum_probs=32.5

Q ss_pred             CCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCC
Q 018414          183 RPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGH  240 (356)
Q Consensus       183 ~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg  240 (356)
                      ..|.+|+++++|++|..+++++..+..+               ..++.||.||+|+..
T Consensus       221 ~~g~~i~l~~~V~~I~~~~~~v~v~~~~---------------g~~~~ad~VI~a~p~  263 (450)
T PF01593_consen  221 ELGGEIRLNTPVTRIEREDGGVTVTTED---------------GETIEADAVISAVPP  263 (450)
T ss_dssp             HHGGGEESSEEEEEEEEESSEEEEEETT---------------SSEEEESEEEE-S-H
T ss_pred             hcCceeecCCcceecccccccccccccc---------------ceEEecceeeecCch
Confidence            3466999999999999999887644332               358999999999983

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>PRK06223 malate dehydrogenase; Reviewed

Probab=83.72  E-value=1.6  Score=40.99  Aligned_cols=33  Identities=18%  Similarity=0.421  Sum_probs=29.2

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~  124 (356)
                      ..|.|||+|..|...|+.++.. +. +|.++|...
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~-~~~ev~L~D~~~   36 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALK-ELGDVVLFDIVE   36 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCeEEEEEECCC
Confidence            3799999999999999999987 65 999999854

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=83.66  E-value=1.5  Score=44.28  Aligned_cols=34  Identities=24%  Similarity=0.339  Sum_probs=30.6

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      ...|+|+|+|..|+.++..+... |.+|+++|.+.
T Consensus       164 ~akVlViGaG~iGl~Aa~~ak~l-GA~V~v~d~~~  197 (511)
T TIGR00561       164 PAKVLVIGAGVAGLAAIGAANSL-GAIVRAFDTRP  197 (511)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            46899999999999999999888 99999999764

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=83.51  E-value=3.4  Score=40.42  Aligned_cols=126  Identities=11%  Similarity=0.179  Sum_probs=68.8

Q ss_pred             CCcccEEEECCCHHHHHHHHHhhc-CCCCeEEEEeccCCCCCccccCCccchhhhccc--hHHHH--HHHh-C----CCc
Q 018414           88 YADTDVVVVGAGSAGLSCAYELSK-NPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRK--PAHIF--LDEL-G----IDY  157 (356)
Q Consensus        88 ~~~~DVvIIGgG~aGl~aA~~La~-~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~--~~~~~--l~~~-G----~~~  157 (356)
                      +.+...+|||+|.+-.+++..... .++.+|++|-..+..-   ++..-+-..++...  .....  +.+| |    +-|
T Consensus       176 p~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelP---YmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiff  252 (659)
T KOG1346|consen  176 PKHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELP---YMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFF  252 (659)
T ss_pred             cccCceeEEcCCchhhhcccccccCCCCceEEeeccCccCc---ccCCCcchhceecCCCChhhheeecccCCccceeEe
Confidence            346789999999988777665543 2388898887654321   11111111111110  00110  0111 0    001


Q ss_pred             cccCCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEc
Q 018414          158 DEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSS  237 (356)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~A  237 (356)
                      . .+.|++  ...++     ..+. +.||-++.+.+|++|..++..   |+.++              +.+|..+..++|
T Consensus       253 e-pd~Ffv--speDL-----p~~~-nGGvAvl~G~kvvkid~~d~~---V~LnD--------------G~~I~YdkcLIA  306 (659)
T KOG1346|consen  253 E-PDGFFV--SPEDL-----PKAV-NGGVAVLRGRKVVKIDEEDKK---VILND--------------GTTIGYDKCLIA  306 (659)
T ss_pred             c-CCccee--ChhHC-----cccc-cCceEEEeccceEEeecccCe---EEecC--------------CcEeehhheeee
Confidence            1 111211  22222     2222 678999999999999877664   34543              588999999999


Q ss_pred             CCCCC
Q 018414          238 CGHDG  242 (356)
Q Consensus       238 tGg~~  242 (356)
                      ||+..
T Consensus       307 TG~~P  311 (659)
T KOG1346|consen  307 TGVRP  311 (659)
T ss_pred             cCcCc
Confidence            99765

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=83.44  E-value=4.1  Score=38.95  Aligned_cols=97  Identities=13%  Similarity=0.179  Sum_probs=64.7

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.++|||||-.++..|=-++.. |.++-|+=|...+-                       +.+               ..
T Consensus       190 kr~vvvGaGYIavE~Agi~~gL-gsethlfiR~~kvL-----------------------R~F---------------D~  230 (478)
T KOG0405|consen  190 KRVVVVGAGYIAVEFAGIFAGL-GSETHLFIRQEKVL-----------------------RGF---------------DE  230 (478)
T ss_pred             ceEEEEccceEEEEhhhHHhhc-CCeeEEEEecchhh-----------------------cch---------------hH
Confidence            4799999999888888777777 88888877764311                       000               12


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~  241 (356)
                      .+.+.+.+.+. ..|++++.++.+++++..++....++...              ......|.|+.|+|..
T Consensus       231 ~i~~~v~~~~~-~~ginvh~~s~~~~v~K~~~g~~~~i~~~--------------~~i~~vd~llwAiGR~  286 (478)
T KOG0405|consen  231 MISDLVTEHLE-GRGINVHKNSSVTKVIKTDDGLELVITSH--------------GTIEDVDTLLWAIGRK  286 (478)
T ss_pred             HHHHHHHHHhh-hcceeecccccceeeeecCCCceEEEEec--------------cccccccEEEEEecCC
Confidence            23334445554 67999999999999988755433333321              1233489999999954

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=83.38  E-value=1.7  Score=40.81  Aligned_cols=33  Identities=24%  Similarity=0.364  Sum_probs=28.8

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCC--eEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~--~V~llEk~~  124 (356)
                      ..|.|||.|..|.+.|..|.+. |.  +|.++++..
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~~-g~~~~V~~~dr~~   41 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRRL-GLAGEIVGADRSA   41 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhc-CCCcEEEEEECCH
Confidence            4699999999999999999988 74  899998864

>PRK07576 short chain dehydrogenase; Provisional

Probab=83.36  E-value=1.8  Score=39.44  Aligned_cols=34  Identities=26%  Similarity=0.428  Sum_probs=29.3

Q ss_pred             cccEEEECC-CHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           90 DTDVVVVGA-GSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        90 ~~DVvIIGg-G~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      ..-++|.|+ |..|..+|.+|+++ |.+|+++.+..
T Consensus         9 ~k~ilItGasggIG~~la~~l~~~-G~~V~~~~r~~   43 (264)
T PRK07576          9 GKNVVVVGGTSGINLGIAQAFARA-GANVAVASRSQ   43 (264)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            356899988 78899999999999 99999998763

>PLN02572 UDP-sulfoquinovose synthase

Probab=82.90  E-value=3.2  Score=41.32  Aligned_cols=30  Identities=37%  Similarity=0.675  Sum_probs=27.7

Q ss_pred             cEEEECC-CHHHHHHHHHhhcCCCCeEEEEec
Q 018414           92 DVVVVGA-GSAGLSCAYELSKNPNIQIAIIEQ  122 (356)
Q Consensus        92 DVvIIGg-G~aGl~aA~~La~~~G~~V~llEk  122 (356)
                      .|+|.|| |..|...+.+|.++ |.+|+++++
T Consensus        49 ~VLVTGatGfIGs~Lv~~L~~~-G~~V~~~d~   79 (442)
T PLN02572         49 KVMVIGGDGYCGWATALHLSKR-GYEVAIVDN   79 (442)
T ss_pred             EEEEECCCcHHHHHHHHHHHHC-CCeEEEEec
Confidence            5999997 99999999999999 999999875

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=82.80  E-value=1.6  Score=41.97  Aligned_cols=32  Identities=31%  Similarity=0.376  Sum_probs=25.2

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCC-CeEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPN-IQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G-~~V~llEk~~  124 (356)
                      .|+|+|+|+.||.++..+... | .+|+++|..+
T Consensus       171 ~V~V~GaGpIGLla~~~a~~~-Ga~~Viv~d~~~  203 (350)
T COG1063         171 TVVVVGAGPIGLLAIALAKLL-GASVVIVVDRSP  203 (350)
T ss_pred             EEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCH
Confidence            599999999999997666667 5 5677777754

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=82.79  E-value=2  Score=40.36  Aligned_cols=34  Identities=21%  Similarity=0.387  Sum_probs=31.2

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      ...|+|||.|.+|..++..|.+. |.+|.++++..
T Consensus       152 g~kvlViG~G~iG~~~a~~L~~~-Ga~V~v~~r~~  185 (296)
T PRK08306        152 GSNVLVLGFGRTGMTLARTLKAL-GANVTVGARKS  185 (296)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHC-CCEEEEEECCH
Confidence            56899999999999999999999 99999999873

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=82.75  E-value=1.7  Score=40.24  Aligned_cols=33  Identities=18%  Similarity=0.232  Sum_probs=28.9

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~  124 (356)
                      ..++|+|+|.++.++++.|++. |. +|.|+.|..
T Consensus       123 ~~vlilGaGGaarAi~~aL~~~-g~~~i~i~nR~~  156 (272)
T PRK12550        123 LVVALRGSGGMAKAVAAALRDA-GFTDGTIVARNE  156 (272)
T ss_pred             CeEEEECCcHHHHHHHHHHHHC-CCCEEEEEeCCH
Confidence            3799999999999999999998 76 599998863

>PRK07774 short chain dehydrogenase; Provisional

Probab=82.65  E-value=2.2  Score=38.15  Aligned_cols=33  Identities=21%  Similarity=0.406  Sum_probs=29.5

Q ss_pred             ccEEEECC-CHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           91 TDVVVVGA-GSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGg-G~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      ..++|.|+ |..|..+|.+|+++ |.+|+++.+..
T Consensus         7 k~vlItGasg~iG~~la~~l~~~-g~~vi~~~r~~   40 (250)
T PRK07774          7 KVAIVTGAAGGIGQAYAEALARE-GASVVVADINA   40 (250)
T ss_pred             CEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            45999998 99999999999999 99999998763

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=82.53  E-value=6.5  Score=39.47  Aligned_cols=58  Identities=19%  Similarity=0.307  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeC---C--eEEEEEEcceeeecccCCCCCCC-CeEEEcCEEEEcCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKG---G--RVGGVVTNWALVSMNHDTQSCMD-PNVMEAKVVVSSCGHD  241 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~---~--~v~gv~~~~~~~~~~~~~~~~g~-~~~i~Ak~VI~AtGg~  241 (356)
                      .+.+.+.+.+. +.|++|+.+++|++|..++   +  +++++.+.+            ++ ..++.+|.||+|+...
T Consensus       220 ~l~~pl~~~L~-~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~------------g~~~~~~~aD~VVlA~p~~  283 (474)
T TIGR02732       220 YLTKPILEYIE-ARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSK------------PEGKKVIKADAYVAACDVP  283 (474)
T ss_pred             hHHHHHHHHHH-HCCCEEECCCEEEEEEEecCCCCceeEEEEEEec------------CCcceEEECCEEEECCChH
Confidence            34566777776 5799999999999998864   2  366666532            11 2458999999999964

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=82.49  E-value=1.7  Score=43.97  Aligned_cols=32  Identities=25%  Similarity=0.364  Sum_probs=30.1

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .|.|||+|.-|...|..+++. |++|+++|+..
T Consensus         7 kV~VIGaG~MG~gIA~~la~a-G~~V~l~d~~~   38 (503)
T TIGR02279         7 TVAVIGAGAMGAGIAQVAASA-GHQVLLYDIRA   38 (503)
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            599999999999999999999 99999999875

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=82.47  E-value=3.9  Score=39.61  Aligned_cols=52  Identities=12%  Similarity=0.067  Sum_probs=37.1

Q ss_pred             HHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCC
Q 018414          174 STIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGH  240 (356)
Q Consensus       174 ~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg  240 (356)
                      +.|.+.+. +.|++|+++++|++|..+++++..+...              +..++.||.||+|+-.
T Consensus       201 ~~l~~~l~-~~g~~i~~~~~V~~i~~~~~~~~~~~~~--------------~g~~~~~d~vi~a~p~  252 (419)
T TIGR03467       201 EPARRWLD-SRGGEVRLGTRVRSIEANAGGIRALVLS--------------GGETLPADAVVLAVPP  252 (419)
T ss_pred             HHHHHHHH-HcCCEEEcCCeeeEEEEcCCcceEEEec--------------CCccccCCEEEEcCCH
Confidence            33555554 5689999999999999888765433322              1256889999998773

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

>PTZ00117 malate dehydrogenase; Provisional

Probab=82.29  E-value=2.1  Score=40.59  Aligned_cols=34  Identities=18%  Similarity=0.334  Sum_probs=29.9

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCC-CeEEEEeccC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPN-IQIAIIEQSV  124 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G-~~V~llEk~~  124 (356)
                      ...|.|||+|..|...|+.++.. + ..+.|+|...
T Consensus         5 ~~KI~IIGaG~vG~~ia~~l~~~-~~~~l~L~Di~~   39 (319)
T PTZ00117          5 RKKISMIGAGQIGSTVALLILQK-NLGDVVLYDVIK   39 (319)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHC-CCCeEEEEECCC
Confidence            45899999999999999999988 7 6899999864

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=82.27  E-value=1.7  Score=43.80  Aligned_cols=32  Identities=22%  Similarity=0.378  Sum_probs=29.1

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEecc
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~  123 (356)
                      -.|+|+|.|..|++++..|.+. |.+|++.|..
T Consensus        13 ~~v~V~G~G~sG~aa~~~L~~~-G~~v~~~D~~   44 (488)
T PRK03369         13 APVLVAGAGVTGRAVLAALTRF-GARPTVCDDD   44 (488)
T ss_pred             CeEEEEcCCHHHHHHHHHHHHC-CCEEEEEcCC
Confidence            3699999999999999999888 9999999964

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=82.27  E-value=1.6  Score=46.20  Aligned_cols=32  Identities=22%  Similarity=0.406  Sum_probs=30.1

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .|.|||+|..|...|..++.. |++|+++|...
T Consensus       315 ~v~ViGaG~mG~gIA~~~a~~-G~~V~l~d~~~  346 (715)
T PRK11730        315 QAAVLGAGIMGGGIAYQSASK-GVPVIMKDINQ  346 (715)
T ss_pred             eEEEECCchhHHHHHHHHHhC-CCeEEEEeCCH
Confidence            599999999999999999999 99999999875

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=82.21  E-value=2.1  Score=43.44  Aligned_cols=32  Identities=22%  Similarity=0.368  Sum_probs=30.1

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .|.|||+|.-|...|..+++. |+.|+++|+..
T Consensus         9 ~V~VIGaG~MG~gIA~~la~a-G~~V~l~D~~~   40 (507)
T PRK08268          9 TVAVIGAGAMGAGIAQVAAQA-GHTVLLYDARA   40 (507)
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            599999999999999999999 99999999875

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=82.17  E-value=1.8  Score=43.42  Aligned_cols=33  Identities=21%  Similarity=0.415  Sum_probs=28.7

Q ss_pred             cEEEECCCHHHHHHHHHhhcCC-CCeEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNP-NIQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~-G~~V~llEk~~  124 (356)
                      .|.|||.|..|+.+|..|++.+ |++|+.+|...
T Consensus         3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~   36 (473)
T PLN02353          3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV   36 (473)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence            5999999999999999999861 48899999764

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=82.13  E-value=2.2  Score=38.60  Aligned_cols=34  Identities=29%  Similarity=0.543  Sum_probs=30.2

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~  124 (356)
                      +..|+|||.|..|..+|..|++. |. +++|+|...
T Consensus        11 ~~~VlVvG~GGvGs~va~~Lar~-GVg~i~LvD~D~   45 (231)
T cd00755          11 NAHVAVVGLGGVGSWAAEALARS-GVGKLTLIDFDV   45 (231)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCE
Confidence            46899999999999999999998 76 889998764

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=82.11  E-value=2.2  Score=38.38  Aligned_cols=34  Identities=29%  Similarity=0.567  Sum_probs=29.9

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~  124 (356)
                      +..|+|||.|..|...|..|++. |. +++|+|...
T Consensus        21 ~~~VlivG~GglGs~va~~La~~-Gvg~i~lvD~D~   55 (228)
T cd00757          21 NARVLVVGAGGLGSPAAEYLAAA-GVGKLGLVDDDV   55 (228)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCE
Confidence            46899999999999999999998 76 788888763

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=81.97  E-value=1.6  Score=44.70  Aligned_cols=34  Identities=26%  Similarity=0.343  Sum_probs=31.4

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      +-.++|+|.|..|...|..|.++ |.+|+++|+++
T Consensus       417 ~~hiiI~G~G~~G~~la~~L~~~-g~~vvvId~d~  450 (558)
T PRK10669        417 CNHALLVGYGRVGSLLGEKLLAA-GIPLVVIETSR  450 (558)
T ss_pred             CCCEEEECCChHHHHHHHHHHHC-CCCEEEEECCH
Confidence            35799999999999999999999 99999999875

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=81.93  E-value=1.7  Score=41.04  Aligned_cols=32  Identities=22%  Similarity=0.439  Sum_probs=28.9

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .+.|+|+|..|...|+.|++. |..|+++=|..
T Consensus         2 kI~IlGaGAvG~l~g~~L~~~-g~~V~~~~R~~   33 (307)
T COG1893           2 KILILGAGAIGSLLGARLAKA-GHDVTLLVRSR   33 (307)
T ss_pred             eEEEECCcHHHHHHHHHHHhC-CCeEEEEecHH
Confidence            489999999999999999999 88888887765

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=81.91  E-value=2  Score=42.49  Aligned_cols=34  Identities=29%  Similarity=0.424  Sum_probs=30.8

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      ...|+|+|.|..|..+|..|... |.+|+++|..+
T Consensus       212 Gk~VlViG~G~IG~~vA~~lr~~-Ga~ViV~d~dp  245 (425)
T PRK05476        212 GKVVVVAGYGDVGKGCAQRLRGL-GARVIVTEVDP  245 (425)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-CCEEEEEcCCc
Confidence            35699999999999999999999 99999999865

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=81.91  E-value=3  Score=39.66  Aligned_cols=100  Identities=19%  Similarity=0.265  Sum_probs=64.4

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechHH
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAAL  171 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~  171 (356)
                      .-+|||+|-.+|.||-.|+-. |+.|+|.=|.-...|                                       -..+
T Consensus       200 kTLvVGa~YVaLECAgFL~gf-g~~vtVmVRSI~LrG---------------------------------------FDqd  239 (503)
T KOG4716|consen  200 KTLVVGAGYVALECAGFLKGF-GYDVTVMVRSILLRG---------------------------------------FDQD  239 (503)
T ss_pred             ceEEEccceeeeehhhhHhhc-CCCcEEEEEEeeccc---------------------------------------ccHH
Confidence            579999999999999999999 999999877632111                                       0133


Q ss_pred             HHHHHHHHHHcCCCcEEEcCeEEEEEEEe-CCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          172 FTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       172 ~~~~l~~~~~~~~gv~i~~~~~v~~i~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      +.+.+.+.+. +.|++|+..+..+.+++- +++.. |....      ..+   ++...-..+-|+.|-|..+
T Consensus       240 mae~v~~~m~-~~Gikf~~~~vp~~Veq~~~g~l~-v~~k~------t~t---~~~~~~~ydTVl~AiGR~~  300 (503)
T KOG4716|consen  240 MAELVAEHME-ERGIKFLRKTVPERVEQIDDGKLR-VFYKN------TNT---GEEGEEEYDTVLWAIGRKA  300 (503)
T ss_pred             HHHHHHHHHH-HhCCceeecccceeeeeccCCcEE-EEeec------ccc---cccccchhhhhhhhhcccc
Confidence            3444444444 679999988877777764 44432 22211      111   1223345678999999654

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=81.88  E-value=1.8  Score=44.12  Aligned_cols=32  Identities=31%  Similarity=0.525  Sum_probs=29.0

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEecc
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~  123 (356)
                      ..++|+|+|.+|.++|+.|++. |.+|+++.|.
T Consensus       380 k~vlIlGaGGagrAia~~L~~~-G~~V~i~nR~  411 (529)
T PLN02520        380 KLFVVIGAGGAGKALAYGAKEK-GARVVIANRT  411 (529)
T ss_pred             CEEEEECCcHHHHHHHHHHHHC-CCEEEEEcCC
Confidence            4589999999999999999999 8999999875

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=81.87  E-value=1.8  Score=40.08  Aligned_cols=32  Identities=19%  Similarity=0.212  Sum_probs=29.3

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .|.|||.|..|.+.|..|.++ |.+|.++++..
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~-g~~V~~~d~~~   33 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSL-GHTVYGVSRRE   33 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHC-CCEEEEEECCH
Confidence            489999999999999999999 99999999864

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=81.86  E-value=2  Score=40.17  Aligned_cols=34  Identities=24%  Similarity=0.389  Sum_probs=30.9

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      ...++|||.|..|..+|..|... |.+|+++++..
T Consensus       151 gk~v~IiG~G~iG~avA~~L~~~-G~~V~v~~R~~  184 (287)
T TIGR02853       151 GSNVMVLGFGRTGMTIARTFSAL-GARVFVGARSS  184 (287)
T ss_pred             CCEEEEEcChHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            45799999999999999999999 99999999863

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=81.79  E-value=2  Score=40.03  Aligned_cols=32  Identities=31%  Similarity=0.584  Sum_probs=28.3

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCC-eEEEEecc
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQS  123 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~  123 (356)
                      ..++|+|+|.++-++++.|++. |. ++.|+.|.
T Consensus       128 k~vlilGaGGaarAi~~aL~~~-g~~~i~i~nR~  160 (283)
T PRK14027        128 DSVVQVGAGGVGNAVAYALVTH-GVQKLQVADLD  160 (283)
T ss_pred             CeEEEECCcHHHHHHHHHHHHC-CCCEEEEEcCC
Confidence            4699999999999999999998 65 68898876

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=81.75  E-value=2.1  Score=39.55  Aligned_cols=32  Identities=28%  Similarity=0.488  Sum_probs=29.2

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEecc
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~  123 (356)
                      ..++|+|+|.+|.+++..|++. |.+|.++.|.
T Consensus       118 k~vliiGaGg~g~aia~~L~~~-g~~v~v~~R~  149 (270)
T TIGR00507       118 QRVLIIGAGGAARAVALPLLKA-DCNVIIANRT  149 (270)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHC-CCEEEEEeCC
Confidence            4699999999999999999998 8999999875

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=81.55  E-value=1.8  Score=45.85  Aligned_cols=32  Identities=25%  Similarity=0.387  Sum_probs=30.1

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .|.|||+|..|...|..++.. |++|+++|...
T Consensus       315 ~v~ViGaG~mG~gIA~~~a~~-G~~V~l~d~~~  346 (714)
T TIGR02437       315 QAAVLGAGIMGGGIAYQSASK-GTPIVMKDINQ  346 (714)
T ss_pred             eEEEECCchHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            599999999999999999999 99999999874

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=81.51  E-value=2.7  Score=34.74  Aligned_cols=33  Identities=27%  Similarity=0.455  Sum_probs=27.9

Q ss_pred             cEEEECC-CHHHHHHHHHhhcCC-CCeEEEEeccC
Q 018414           92 DVVVVGA-GSAGLSCAYELSKNP-NIQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGg-G~aGl~aA~~La~~~-G~~V~llEk~~  124 (356)
                      .|.|||+ |..|..+|+.|...+ ..++.|+|...
T Consensus         2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~   36 (141)
T PF00056_consen    2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE   36 (141)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence            5899999 999999999999862 34699999874

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	356
1rp0_A	284	Crystal Structure Of Thi1 Protein From Arabidopsis		1e-148
3jsk_A	344	Thiazole Synthase From Neurospora Crassa Length = 3		3e-95
3fpz_A	326	Saccharomyces Cerevisiae Thi4p Is A Suicide Thiamin		9e-78

>pdb|1RP0|A Chain A, Crystal Structure Of Thi1 Protein From Arabidopsis Thaliana Length = 284

Iteration: 1
 Score =  522 bits (1344), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 247/280 (88%), Positives = 262/280 (93%)
Query: 55  SPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPN 114
           S  YDLN F FDPIKESIVSREMTRRYMTDMITYA+TD    GAGSAGLS AYE+SKNPN
Sbjct: 4   SAGYDLNAFTFDPIKESIVSREMTRRYMTDMITYAETDVVVVGAGSAGLSAAYEISKNPN 63
Query: 115 IQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTS 174
           +Q+AIIEQSVSPGGGAWLGGQLFSAM+VRKPAH+FLDE+G+ YDEQD YVV+KHAALFTS
Sbjct: 64  VQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAALFTS 123
Query: 175 TIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVV 234
           TIMSKLLARPNVKLFNAVAAEDLIVKG RVGGVVTNWALV+ NH TQSCMDPNVMEAK+V
Sbjct: 124 TIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIV 183
Query: 235 VSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEV 294
           VSSCGHDGPFGATGVKRLKSIGMI+ VPGMKALDMN+AEDAIVRLTREVVPGMIVTGMEV
Sbjct: 184 VSSCGHDGPFGATGVKRLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEV 243
Query: 295 AEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGT 334
           AEIDGAPRMGPTFGAMMISGQKA  LALK+LG PNA+DGT
Sbjct: 244 AEIDGAPRMGPTFGAMMISGQKAGQLALKALGLPNAIDGT 283

>pdb|3JSK|A Chain A, Thiazole Synthase From Neurospora Crassa Length = 344

Iteration: 1
 Score =  345 bits (884), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 169/288 (58%), Positives = 209/288 (72%), Gaps = 20/288 (6%)
Query: 56  PPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSK-NPN 114
           P    + F F PI+ES VSR MTRRY  D+  +A+TD    GAGS GLS AY LS   P+
Sbjct: 45  PTLGTDAFTFSPIRESTVSRAMTRRYFADLDAHAETDIVIVGAGSCGLSAAYVLSTLRPD 104
Query: 115 IQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTS 174
           ++I I+E  V+PGGGAWLGGQLFSAMV+RKPA +FLDE+G+ Y+++ +YVV+KHAALFTS
Sbjct: 105 LRITIVEAGVAPGGGAWLGGQLFSAMVMRKPADVFLDEVGVPYEDEGDYVVVKHAALFTS 164
Query: 175 TIMSKLLARPNVKLFNAVAAEDLIVKGG-------------------RVGGVVTNWALVS 215
           T++SK+L RPNVKLFNA   EDLI +                     R+ GVVTNW LVS
Sbjct: 165 TVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVS 224
Query: 216 MNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDA 275
           M+HD QS MDPN + A V++S+ GHDGPFGA  VKRL S+  +E + GM+ LDM SAEDA
Sbjct: 225 MHHDDQSXMDPNTINAPVIISTTGHDGPFGAFSVKRLVSMKQMERLNGMRGLDMQSAEDA 284
Query: 276 IVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 323
           IV  TRE+VPG+IV GME++EIDGA RMGPTFGAM +SG KAAH A++
Sbjct: 285 IVNNTREIVPGLIVGGMELSEIDGANRMGPTFGAMALSGVKAAHEAIR 332

>pdb|3FPZ|A Chain A, Saccharomyces Cerevisiae Thi4p Is A Suicide Thiamin Thiazole Synthase Length = 326

Iteration: 1
 Score =  286 bits (733), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 154/291 (52%), Positives = 192/291 (65%), Gaps = 24/291 (8%)
Query: 59  DLNTFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKN-PNIQI 117
           D + FKF PI+ES VSR MT RY  D+  +A +D    GAGS+GLS AY ++KN P++++
Sbjct: 34  DWSDFKFAPIRESTVSRAMTSRYFKDLDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKV 93
Query: 118 AIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIM 177
            IIE SV+PGGG+WLGGQLFSAMV+RKPAH+FL EL I Y+++ +YVV+KHAALF ST++
Sbjct: 94  CIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDYVVVKHAALFISTVL 153
Query: 178 SKLLARPNVKLFNAVAAEDLIV-----KGG-RVGGVVTNWALVSMNHDTQSCMDPNVMEA 231
           SK+L  PNVKLFNA   EDL+      KG   V GVVTNW LV+  H TQ  MDPNV+E 
Sbjct: 154 SKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCXMDPNVIEL 213
Query: 232 K---------------VVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAI 276
                           V++S+ GHDGPFGA   KR+  I   +++ GMK LDMN AE  +
Sbjct: 214 AGYKNDGTRDLSQKHGVILSTTGHDGPFGAFCAKRIVDIDQNQKLGGMKGLDMNHAEHDV 273
Query: 277 VRLTREV--VPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 325
           V  +     V  M   GMEVAE+DG  RMGPTFGAM +SG  AA   LK  
Sbjct: 274 VIHSGAYAGVDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQILKHF 324

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	356
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	1e-131
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	1e-122
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	1e-114
3utf_A	513	UDP-galactopyranose mutase; nucleotide binding, fl	1e-08
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	5e-08
3atr_A	453	Conserved archaeal protein; saturating double bond	6e-08
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	9e-08
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	3e-07
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	5e-07
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	6e-07
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	6e-07
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	6e-07
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	7e-07
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	9e-07
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	1e-06
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	1e-06
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	2e-06
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	2e-06
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	2e-06
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	2e-06
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	4e-06
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	5e-06
1fcd_A	401	Flavocytochrome C sulfide dehydrogenase (flavin- b	6e-06
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	7e-06
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	7e-06
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	1e-05
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	1e-05
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	1e-05
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	1e-05
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	1e-05
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	2e-05
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	2e-05
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	2e-05
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	2e-05
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	2e-05
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	4e-05
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	4e-05
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	4e-05
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	4e-05
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	4e-05
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	5e-05
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	5e-05
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	5e-05
3dme_A	369	Conserved exported protein; structural genomics, P	5e-05
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	6e-05
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	8e-05
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	9e-05
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	9e-05
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	9e-05
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	1e-04
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	1e-04
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	2e-04
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	2e-04
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	2e-04
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	2e-04
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	2e-04
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	2e-04
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	2e-04
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	2e-04
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	3e-04
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	3e-04
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	3e-04
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	4e-04
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	4e-04
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	5e-04
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	5e-04
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	5e-04
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	6e-04
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	6e-04
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	7e-04

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 Length = 284

 Score =  376 bits (967), Expect = e-131
 Identities = 251/283 (88%), Positives = 266/283 (93%)

Query: 52  ASASPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSK 111
              S  YDLN F FDPIKESIVSREMTRRYMTDMITYA+TDVVVVGAGSAGLS AYE+SK
Sbjct: 1   GRGSAGYDLNAFTFDPIKESIVSREMTRRYMTDMITYAETDVVVVGAGSAGLSAAYEISK 60

Query: 112 NPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAAL 171
           NPN+Q+AIIEQSVSPGGGAWLGGQLFSAM+VRKPAH+FLDE+G+ YDEQD YVV+KHAAL
Sbjct: 61  NPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAAL 120

Query: 172 FTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEA 231
           FTSTIMSKLLARPNVKLFNAVAAEDLIVKG RVGGVVTNWALV+ NH TQSCMDPNVMEA
Sbjct: 121 FTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEA 180

Query: 232 KVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTG 291
           K+VVSSCGHDGPFGATGVKRLKSIGMI+ VPGMKALDMN+AEDAIVRLTREVVPGMIVTG
Sbjct: 181 KIVVSSCGHDGPFGATGVKRLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTG 240

Query: 292 MEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGT 334
           MEVAEIDGAPRMGPTFGAMMISGQKA  LALK+LG PNA+DGT
Sbjct: 241 MEVAEIDGAPRMGPTFGAMMISGQKAGQLALKALGLPNAIDGT 283

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} Length = 344

 Score =  355 bits (912), Expect = e-122
 Identities = 176/351 (50%), Positives = 224/351 (63%), Gaps = 28/351 (7%)

Query: 4   MASTAFAPSVSSTTNKLFDSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTF 63
           M+ +   P    T             +        P++              P    + F
Sbjct: 1   MSPSVLEPQSVPTLV--------NVGLKAVGRNDAPVERDARGLSKPLLELMPTLGTDAF 52

Query: 64  KFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSK-NPNIQIAIIEQ 122
            F PI+ES VSR MTRRY  D+  +A+TD+V+VGAGS GLS AY LS   P+++I I+E 
Sbjct: 53  TFSPIRESTVSRAMTRRYFADLDAHAETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEA 112

Query: 123 SVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLA 182
            V+PGGGAWLGGQLFSAMV+RKPA +FLDE+G+ Y+++ +YVV+KHAALFTST++SK+L 
Sbjct: 113 GVAPGGGAWLGGQLFSAMVMRKPADVFLDEVGVPYEDEGDYVVVKHAALFTSTVLSKVLQ 172

Query: 183 RPNVKLFNAVAAEDLIVK-------------------GGRVGGVVTNWALVSMNHDTQSC 223
           RPNVKLFNA   EDLI +                     R+ GVVTNW LVSM+HD QS 
Sbjct: 173 RPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMHHDDQSA 232

Query: 224 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREV 283
           MDPN + A V++S+ GHDGPFGA  VKRL S+  +E + GM+ LDM SAEDAIV  TRE+
Sbjct: 233 MDPNTINAPVIISTTGHDGPFGAFSVKRLVSMKQMERLNGMRGLDMQSAEDAIVNNTREI 292

Query: 284 VPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGT 334
           VPG+IV GME++EIDGA RMGPTFGAM +SG KAAH A++      A +  
Sbjct: 293 VPGLIVGGMELSEIDGANRMGPTFGAMALSGVKAAHEAIRVFDLRKAQNDK 343

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP: c.3.1.6 PDB: 3fpz_A* Length = 326

 Score =  334 bits (857), Expect = e-114
 Identities = 156/323 (48%), Positives = 202/323 (62%), Gaps = 24/323 (7%)

Query: 28  APMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTRRYMTDMIT 87
           A  + +      +  +        +      D + FKF PI+ES VSR MT RY  D+  
Sbjct: 3   ATSTATSTSASQLHLNSTPVTHCLSDIVKKEDWSDFKFAPIRESTVSRAMTSRYFKDLDK 62

Query: 88  YADTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA 146
           +A +DV++VGAGS+GLS AY ++KN P++++ IIE SV+PGGG+WLGGQLFSAMV+RKPA
Sbjct: 63  FAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPA 122

Query: 147 HIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG----- 201
           H+FL EL I Y+++ +YVV+KHAALF ST++SK+L  PNVKLFNA   EDL+ +      
Sbjct: 123 HLFLQELEIPYEDEGDYVVVKHAALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKG 182

Query: 202 -GRVGGVVTNWALVSMNHDTQSCMDPNVMEA---------------KVVVSSCGHDGPFG 245
              V GVVTNW LV+  H TQ CMDPNV+E                 V++S+ GHDGPFG
Sbjct: 183 EVTVAGVVTNWTLVTQAHGTQCCMDPNVIELAGYKNDGTRDLSQKHGVILSTTGHDGPFG 242

Query: 246 ATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREV--VPGMIVTGMEVAEIDGAPRM 303
           A   KR+  I   +++ GMK LDMN AE  +V  +     V  M   GMEVAE+DG  RM
Sbjct: 243 AFCAKRIVDIDQNQKLGGMKGLDMNHAEHDVVIHSGAYAGVDNMYFAGMEVAELDGLNRM 302

Query: 304 GPTFGAMMISGQKAAHLALKSLG 326
           GPTFGAM +SG  AA   LK   
Sbjct: 303 GPTFGAMALSGVHAAEQILKHFA 325

>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine dinucleotide BIND isomerase; HET: FDA; 2.25A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* Length = 513

 Score = 55.3 bits (132), Expect = 1e-08
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 7/54 (12%)

Query: 77  MTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130
           MT   ++        DV+V+GAG  GL  A  L++       I++ + +PGG A
Sbjct: 4   MTHPDIS-------VDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLA 50

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* Length = 484

 Score = 54.9 bits (131), Expect = 2e-08
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 82  MTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130
           M +++T     +V++GAG  GL  A  L++       + E + +PGG +
Sbjct: 4   MAELLTP---KIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLS 49

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 2e-08
 Identities = 43/307 (14%), Positives = 90/307 (29%), Gaps = 77/307 (25%)

Query: 23  SSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTFK-FDPIKESIVSREMTRRY 81
           S        PS++    I   R + L         Y+++  + +  +++++   E+    
Sbjct: 96  SPIKTEQRQPSMMTRMYI-EQR-DRLYNDNQVFAKYNVSRLQPYLKLRQAL--LELRP-- 149

Query: 82  MTDMITYADTDVVVVGAGSAGLSC-AYELSKNPNIQIAIIEQSVSPGGGAWLG-GQLFSA 139
                     +V++ G   +G +  A ++  +  +Q  +           WL      S 
Sbjct: 150 --------AKNVLIDGVLGSGKTWVALDVCLSYKVQCKM------DFKIFWLNLKNCNSP 195

Query: 140 MVVRKPAHIFLDELGIDYDEQ-DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLI 198
             V +     L ++  ++  + D+   IK         + +LL     +         L+
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE-------NCLL 248

Query: 199 VKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD-GPFGATGVKRLKSIGM 257
           V    +  V    A  + N    SC        K+++++                  I +
Sbjct: 249 V----LLNVQNAKAWNAFNL---SC--------KILLTT--RFKQVTDFLSAATTTHISL 291

Query: 258 IEEVPGM----------KALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTF 307
                 +          K LD    +D    L REV+                PR     
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDC-RPQD----LPREVL-------------TTNPRRLSII 333

Query: 308 GAMMISG 314
              +  G
Sbjct: 334 AESIRDG 340

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} Length = 405

 Score = 53.2 bits (126), Expect = 5e-08
 Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 67  PIKESIVSREMTRRYMTDMITYADT--DVVVVGAGSAGLSCAYELSK-NPNIQIAIIEQS 123
           P  +    R     +      + +   D+VV+GAG  G +CA+ L +  P   + ++E+ 
Sbjct: 11  PPPDPTPPRRAGSVWAHVGQHFTEEAFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEG 70

Query: 124 VSPG--GGAWLGGQLFSAM 140
             P   G   L   +++A 
Sbjct: 71  GLPNEEGATILAPGVWTAQ 89

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* Length = 453

 Score = 52.9 bits (127), Expect = 6e-08
 Identities = 36/191 (18%), Positives = 64/191 (33%), Gaps = 55/191 (28%)

Query: 82  MTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA-WLGGQLFSAM 140
           M ++      DV+++G G AG S AY+LS+   ++I +++       G    G  +  A 
Sbjct: 2   MKEL----KYDVLIIGGGFAGSSAAYQLSRR-GLKILLVDSKPWNRIGDKPCGDAVSKAH 56

Query: 141 VVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPN--------------- 185
                     D+LG+ Y + +      +     S  M  +                    
Sbjct: 57  F---------DKLGMPYPKGEELENKINGIKLYSPDMQTVWTVNGEGFELNAPLYNQRVL 107

Query: 186 -------VKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSC 238
                  V++++   A   I + G V G V     +          +   + +KVVV   
Sbjct: 108 KEAQDRGVEIWDLTTAMKPIFEDGYVKGAV-----LFNRRTN----EELTVYSKVVV--- 155

Query: 239 GHDGPFGATGV 249
                  ATG 
Sbjct: 156 ------EATGY 160

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* Length = 424

 Score = 52.6 bits (126), Expect = 9e-08
 Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 16/84 (19%)

Query: 90  DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW----------LGGQLFSA 139
           D+ + ++GAG AGL+    L +       I+E++   GG             +G  +   
Sbjct: 6   DSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHSPNYHGRRYEMGAIMGVP 65

Query: 140 M--VVRKPAHIFLDELGIDYDEQD 161
               +++     +D  G   D   
Sbjct: 66  SYDTIQE----IMDRTGDKVDGPK 85

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Length = 478

 Score = 50.7 bits (121), Expect = 3e-07
 Identities = 21/90 (23%), Positives = 32/90 (35%), Gaps = 18/90 (20%)

Query: 78  TRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG--------G 129
              +M         +V VVG G +GL+ A+ L         ++E S   GG        G
Sbjct: 7   HHHHMPRT---TGMNVAVVGGGISGLAVAHHLRSRG-TDAVLLESSARLGGAVGTHALAG 62

Query: 130 AWL--GGQLFSAMVVRKPAHI-FLDELGID 156
             +  G   F     R+PA       L ++
Sbjct: 63  YLVEQGPNSFLD---REPATRALAAALNLE 89

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} Length = 475

 Score = 50.0 bits (119), Expect = 5e-07
 Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 13/76 (17%)

Query: 92  DVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWL-----GGQLF----SAMV 141
            +V+VG G  GL+ AY   +  P++ I ++E     GG   +      G        + V
Sbjct: 6   RLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGG--KVATYREDGFTIERGPDSYV 63

Query: 142 VRKPAHI-FLDELGID 156
            RK      ++ +G+ 
Sbjct: 64  ARKHILTDLIEAIGLG 79

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* Length = 448

 Score = 50.2 bits (120), Expect = 6e-07
 Identities = 15/39 (38%), Positives = 21/39 (53%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130
           D VVVGAG  GL+ AY L       + +++   +PG G 
Sbjct: 25  DYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAGHAPGSGD 63

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} Length = 399

 Score = 49.8 bits (118), Expect = 6e-07
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 82  MTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW 131
           M  M   A  D+ VVG+G  GL+ A  ++   + ++ ++E+    GG A+
Sbjct: 1   MQPMT--ARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAY 48

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Length = 421

 Score = 50.1 bits (120), Expect = 6e-07
 Identities = 21/77 (27%), Positives = 28/77 (36%), Gaps = 11/77 (14%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA---WLGGQLFSA-------MV 141
             VVVGAG  GL     L++N   +I ++E+S   GG        G   S          
Sbjct: 2   RAVVVGAGLGGLLAGAFLARN-GHEIIVLEKSAMIGGRFTNLPYKGFQLSTGALHMIPHG 60

Query: 142 VRKPAHIFLDELGIDYD 158
              P    L  LG   +
Sbjct: 61  EDGPLAHLLRILGAKVE 77

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* Length = 438

 Score = 49.5 bits (118), Expect = 7e-07
 Identities = 10/46 (21%), Positives = 22/46 (47%)

Query: 85  MITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130
           M     + +++VGAG+ G S A  L++     + +++    P   +
Sbjct: 1   MAVTKSSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPVPSAIS 46

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Length = 504

 Score = 49.4 bits (117), Expect = 9e-07
 Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 13/79 (16%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWL-----GGQLF----SAMVV 142
            V V+GAG +GL+ AY+L     + + + E     GG   L      G ++    + M  
Sbjct: 15  RVAVIGAGVSGLAAAYKLKI-HGLNVTVFEAEGKAGG--KLRSVSQDGLIWDEGANTMTE 71

Query: 143 RKPAHI-FLDELGIDYDEQ 160
            +      +D LG+   +Q
Sbjct: 72  SEGDVTFLIDSLGLREKQQ 90

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* Length = 639

 Score = 49.1 bits (117), Expect = 1e-06
 Identities = 16/41 (39%), Positives = 25/41 (60%)

Query: 89  ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG 129
           +  DV++VG G AGL+ A +L+  P+I+  I+EQ   P   
Sbjct: 31  SQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMEL 71

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* Length = 384

 Score = 48.5 bits (115), Expect = 1e-06
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 4/47 (8%)

Query: 85  MITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW 131
           M +     +++VGAG +G     +L++    Q+ II+Q    GG ++
Sbjct: 1   MKSK---KILIVGAGFSGAVIGRQLAEK-GHQVHIIDQRDHIGGNSY 43

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} Length = 470

 Score = 48.8 bits (116), Expect = 2e-06
 Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 19/81 (23%)

Query: 92  DVVVVGAGSAGLSCAYELSK-----NPNIQIAIIEQSVSPGG--------GAWL--GGQL 136
            VV++G G  GL+ A+ + K     N  +++ ++E S   GG        G  +  G   
Sbjct: 7   HVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQTVKKDGYIIERGPD- 65

Query: 137 FSAMVVRKPAHI-FLDELGID 156
             + + RK +    + +LG++
Sbjct: 66  --SFLERKKSAPQLVKDLGLE 84

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 Length = 367

 Score = 48.1 bits (114), Expect = 2e-06
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130
           D ++VG+G  G  CA EL K  N ++ +IE+    GG A
Sbjct: 3   DYIIVGSGLFGAVCANELKKL-NKKVLVIEKRNHIGGNA 40

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* Length = 584

 Score = 48.3 bits (115), Expect = 2e-06
 Identities = 42/210 (20%), Positives = 67/210 (31%), Gaps = 55/210 (26%)

Query: 76  EMTRRYMTDMITYADTDVVVVGAGSAGLSCAYEL-----SKNPNIQIAIIEQSVSPGGGA 130
            M R          + DVV+VGAG AGLS A  L         ++++ ++E+       A
Sbjct: 28  NMERFAE-------EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEK------AA 74

Query: 131 WLGGQLFSAMVVRKPAHIFLDELGIDYDEQD----NYVVIKHAALFTSTIMSKLLARPNV 186
            +G    S   +   A    +EL  D+ E+       V      + T      +   P +
Sbjct: 75  HIGAHTLSGACLDPRA---FEELFPDWKEKGAPLNTPVTEDRFGILTEKYRIPVPILPGL 131

Query: 187 KLFNA-----------------------------VAAEDLIVKGGRVGGVVTN-WALVSM 216
            + N                               AAE L  + G V G+ TN   +   
Sbjct: 132 PMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKD 191

Query: 217 NHDTQSCMDPNVMEAKVVVSSCGHDGPFGA 246
                +      + AKV + + G  G    
Sbjct: 192 GAPKTTFERGLELHAKVTIFAEGCHGHLAK 221

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* Length = 397

 Score = 48.2 bits (114), Expect = 2e-06
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130
           D ++VGAG AG   A  L+ +   ++ I+++    GG A
Sbjct: 31  DYLIVGAGFAGSVLAERLASS-GQRVLIVDRRPHIGGNA 68

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* Length = 572

 Score = 47.4 bits (113), Expect = 5e-06
 Identities = 26/169 (15%), Positives = 47/169 (27%), Gaps = 51/169 (30%)

Query: 90  DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG--------------------- 128
            TDVV++G+G AGL+ A         ++ ++E+   PGG                     
Sbjct: 126 TTDVVIIGSGGAGLAAAVSARDA-GAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLG 184

Query: 129 ---------------GAWLGGQ-LFSAMVVRKPAHI-FLDELGIDYDEQDNYV------- 164
                          G  +    L   +       I +L  +G D  +            
Sbjct: 185 IEDKKQIMIDDTMKGGRNINDPELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRS 244

Query: 165 -VIKHAALFTSTIMSKLLAR---PNVKLFNAVAAEDLIVKG-GRVGGVV 208
                 A   + +   L          +        ++    G+V GV+
Sbjct: 245 HRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVL 293

>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit); electron transport(flavocytochrome); HET: FAD HEM; 2.53A {Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 401

 Score = 46.7 bits (111), Expect = 6e-06
 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)

Query: 93  VVVVGAGSAGLSCAYELSK-NPNIQIAIIEQS 123
           VVVVG G+ G + A  +   +P+I++ +IE +
Sbjct: 5   VVVVGGGTGGATAAKYIKLADPSIEVTLIEPN 36

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} Length = 477

 Score = 46.6 bits (110), Expect = 7e-06
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 92  DVVVVGAGSAGLSCAYELSK-NPNIQIAIIEQSVSPGG 128
            VVV+G G +GL+ +Y LS+     ++ ++E S   GG
Sbjct: 4   TVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGG 41

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* Length = 498

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 87  TYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG 128
           T     VV+VGAG AGLS AY L+     Q+ ++E S  PGG
Sbjct: 30  TSNPKHVVIVGAGMAGLSAAYVLAGA-GHQVTVLEASERPGG 70

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* Length = 571

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 27/169 (15%), Positives = 50/169 (29%), Gaps = 51/169 (30%)

Query: 90  DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG--------------------- 128
             DVVVVG+G AG S A   + +   ++ +IE+    GG                     
Sbjct: 126 TVDVVVVGSGGAGFSAAISATDS-GAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKK 184

Query: 129 ---------------GAWLGGQ-LFSAMVVR-KPAHIFLDELGIDYDEQDNYV------- 164
                          G  +    L   +    K +  ++  +G D  +            
Sbjct: 185 ITDSPELMFEDTMKGGQNINDPALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRA 244

Query: 165 -VIKHAALFTSTIMSKLLAR---PNVKLFNAVAAEDLIVKG-GRVGGVV 208
                 A   + ++  L       N+ L       +++    G V G++
Sbjct: 245 HRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGIL 293

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* Length = 516

 Score = 45.9 bits (108), Expect = 1e-05
 Identities = 18/98 (18%), Positives = 32/98 (32%), Gaps = 23/98 (23%)

Query: 82  MTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIE-----------QSVSPG--- 127
           M  +   A   V+++GAG AGL  A  L +N      ++E            +   G   
Sbjct: 1   MNTVSP-AKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKY 59

Query: 128 --GGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNY 163
             G +W          +  P  +   +L ++       
Sbjct: 60  DIGASWHHD------TLTNPLFLEEAQLSLNDGRTRFV 91

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* Length = 472

 Score = 45.7 bits (108), Expect = 1e-05
 Identities = 21/117 (17%), Positives = 42/117 (35%), Gaps = 17/117 (14%)

Query: 91  TDVVVVGAGSAGLSCAYELSKNPNIQIAIIE---------QSVSPG------GGAWLGGQ 135
             V+VVGAG +G+S A  LS+     + I+E            +        G  W+ G 
Sbjct: 5   PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELGANWVEG- 63

Query: 136 LFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAV 192
             +   +     I    L +     D   + ++       +  +   +  ++L ++V
Sbjct: 64  -VNGGKMNPIWPIVNSTLKLRNFRSDFDYLAQNVYKEDGGVYDEDYVQKRIELADSV 119

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)

Query: 90  DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW 131
             DVVV+G G +GLS  Y L ++  +   I++   SP GGAW
Sbjct: 3   SVDVVVIGGGQSGLSAGYFLRRS-GLSYVILDAEASP-GGAW 42

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* Length = 431

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 25/95 (26%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG------------------GAWLG 133
           D +VVG G +GL  A +L+     ++ ++E     GG                  GA+L 
Sbjct: 3   DAIVVGGGFSGLKAARDLTNA-GKKVLLLEGGERLGGRAYSRESRNVPGLRVEIGGAYLH 61

Query: 134 GQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKH 168
            +    +         LD  GI       +   +H
Sbjct: 62  RKHHPRLAA------ELDRYGIPTAAASEFTSFRH 90

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} Length = 369

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 7/71 (9%)

Query: 91  TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWL----GGQLFS-AMVVRKP 145
             V ++GAG+AG+  A  L     I   II +  +  G ++       +  + +      
Sbjct: 5   HKVAIIGAGAAGIGMAITLKDF-GITDVIILEKGTV-GHSFKHWPKSTRTITPSFTSNGF 62

Query: 146 AHIFLDELGID 156
               ++ + +D
Sbjct: 63  GMPDMNAISMD 73

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 Length = 566

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 25/169 (14%), Positives = 46/169 (27%), Gaps = 51/169 (30%)

Query: 90  DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG-GAWLGGQLFSA--------- 139
            T V+VVGAGSAG + +    K     + +++++   GG      G + +          
Sbjct: 121 TTQVLVVGAGSAGFNASLAAKKA-GANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHG 179

Query: 140 ---------------------------MVVRKPAHI-FLDELGIDYDEQDNYV------- 164
                                      +  +    + +L+ LG + D+            
Sbjct: 180 VEDKVEWFIEDAMKGGRQQNDIKLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRT 239

Query: 165 -VIKHAALFTSTIMSKLLAR---PNVKLFNAVAAEDLIVK-GGRVGGVV 208
                       I+  L        +          L+V     V G V
Sbjct: 240 HRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAV 288

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* Length = 382

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 4/49 (8%)

Query: 82  MTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130
           +  M  + +   VV+G G  G + AY L+K  N   A+ E   + GG  
Sbjct: 11  IRAMKRHYE--AVVIGGGIIGSAIAYYLAKE-NKNTALFESG-TMGGRT 55

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Length = 520

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 14/85 (16%)

Query: 90  DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW-----------LGGQLFS 138
             DVVVVG G +G++ A  L  +  + + ++E     GG  +           LGG    
Sbjct: 4   KCDVVVVGGGISGMAAAKLLHDSG-LNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVG 62

Query: 139 AMVVRKPAHIFLDELGIDYDEQDNY 163
               +        ELG++  + +  
Sbjct: 63  P--TQNRILRLAKELGLETYKVNEV 85

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* Length = 437

 Score = 44.4 bits (105), Expect = 4e-05
 Identities = 10/33 (30%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 93  VVVVGAGSAGLSCAYELSK--NPNIQIAIIEQS 123
           VV++GAG+ G+  AYE+ +      ++ +I  +
Sbjct: 7   VVILGAGTGGMPAAYEMKEALGSGHEVTLISAN 39

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* Length = 453

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 11/55 (20%)

Query: 91  TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW----------LGGQ 135
            DV +VGAG +GL+ A  L K   + +A+IE     GG  W          +GGQ
Sbjct: 6   RDVAIVGAGPSGLAAATALRKA-GLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQ 59

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* Length = 489

 Score = 44.1 bits (104), Expect = 4e-05
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 91  TDVVVVGAGSAGLSCAYELSKNPNIQIAIIE 121
             VVV+G G AGL  A+EL K    ++ ++E
Sbjct: 12  HSVVVLGGGPAGLCSAFELQKA-GYKVTVLE 41

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii} Length = 472

 Score = 44.1 bits (105), Expect = 4e-05
 Identities = 31/159 (19%), Positives = 49/159 (30%), Gaps = 44/159 (27%)

Query: 93  VVVVGAGSAGLSCAYELSKNPNIQIAI---IEQSVSP---GG------------------ 128
           + ++G+G AGLS    L +       I   I+   +P   GG                  
Sbjct: 2   IYIIGSGIAGLSAGVALRRAGKKVTLISKRIDGGSTPIAKGGVAASVGSDDSPELHAQDT 61

Query: 129 ---GAWLGGQLFSAMVVRK-PAHI-FLDELGIDYDEQ--------DNYVVIKHAALFT-S 174
              G  L        V  +    I   +  G +++E            V+  H    T  
Sbjct: 62  IRVGDGLCDVKTVNYVTSEAKNVIETFESWGFEFEEDLRLEGGHTKRRVL--HRTDETGR 119

Query: 175 TIMSKLLA---RPNVKLFNAVAAEDLIVKGGRVGGVVTN 210
            I + LL       + +      E  + K G+V G VT 
Sbjct: 120 EIFNFLLKLAREEGIPIIEDRLVEIRV-KDGKVTGFVTE 157

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A* Length = 540

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 43/232 (18%), Positives = 79/232 (34%), Gaps = 75/232 (32%)

Query: 82  MTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQI---AIIEQSVSP---GG------- 128
           M  +  ++  DV+++G+G+AGLS A  L+    + +     + +  +    GG       
Sbjct: 1   MNTLPEHS-CDVLIIGSGAAGLSLALRLADQHQVIVLSKGPVTEGSTFYAQGGIAAVFDE 59

Query: 129 --------------GAWLGGQLFSAMVVRK-PAHI-FLDELGIDYDEQDNYVV------- 165
                         GA +  +     V     + + +L + G+ +D              
Sbjct: 60  TDSIDSHVEDTLIAGAGICDRHAVEFVASNARSCVQWLIDQGVLFDTHIQPNGEESYHLT 119

Query: 166 ---------IKHAALFT-STIMSKLLAR----PNVKLFNAVAAEDLIVKGG-------RV 204
                    I HAA  T   + + L+++    PN+++     A DLIV          RV
Sbjct: 120 REGGHSHRRILHAADATGREVETTLVSKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRV 179

Query: 205 GGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG--------PFGATG 248
            G          N + ++        AK VV + G           P  ++G
Sbjct: 180 VGAWV------WNRNKET---VETCHAKAVVLATGGASKVYQYTTNPDISSG 222

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} Length = 342

 Score = 43.6 bits (101), Expect = 5e-05
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 91  TDVVVVGAGSAGLSCAYELSKN--PNIQIAIIEQSVSPGGGA 130
             V++VGAG  G  CA  L +     + +A+ +++   GG  
Sbjct: 2   AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRM 43

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* Length = 540

 Score = 44.1 bits (105), Expect = 5e-05
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 82  MTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG 128
           MT   T    D VV+GAG  G+   ++L     +     +++  PGG
Sbjct: 1   MTAQTT-HTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGG 46

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} Length = 369

 Score = 43.7 bits (104), Expect = 5e-05
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 89  ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130
            D D +V+GAG  GL+ A  L+     ++ + E +   G G 
Sbjct: 3   TDIDCIVIGAGVVGLAIARALAA-GGHEVLVAEAAEGIGTGT 43

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* Length = 405

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQ-IAIIEQSVSPGGGAW 131
           D ++VG G  GL+ AY L+KN  I  +A++E+    GG   
Sbjct: 23  DAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGWLAGGNMA 63

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* Length = 665

 Score = 43.5 bits (102), Expect = 8e-05
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 5/49 (10%)

Query: 82  MTDMITYADTDVVVVGAGSAGLSCAYELSKN----PNIQIAIIEQSVSP 126
           MT     +  DV++VGAG AGL  A  LS+     P++++ II++  + 
Sbjct: 1   MTKYSE-SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK 48

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* Length = 363

 Score = 43.1 bits (101), Expect = 9e-05
 Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 6/68 (8%)

Query: 85  MITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQ-----SVSPGGGAWLGGQLFSA 139
           ++ ++   VVV+G+G  GLS A  L++     + I+ +       S    +   G  ++ 
Sbjct: 1   LMMHSQKRVVVLGSGVIGLSSALILARK-GYSVHILARDLPEDVSSQTFASPWAGANWTP 59

Query: 140 MVVRKPAH 147
            +      
Sbjct: 60  FMTLTDGP 67

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A Length = 662

 Score = 43.3 bits (101), Expect = 9e-05
 Identities = 17/93 (18%), Positives = 37/93 (39%), Gaps = 10/93 (10%)

Query: 83  TDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW---LGGQLFS- 138
             + T     V+++G+G +GL+ A +L     + + ++E     GG       G  +   
Sbjct: 100 KPLPTKKTGKVIIIGSGVSGLAAARQLQSF-GMDVTLLEARDRVGGRVATFRKGNYVADL 158

Query: 139 -AMVVRK----PAHIFLDELGIDYDEQDNYVVI 166
            AMVV      P  +   ++ ++  +      +
Sbjct: 159 GAMVVTGLGGNPMAVVSKQVNMELAKIKQKCPL 191

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* Length = 381

 Score = 43.0 bits (102), Expect = 9e-05
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 91  TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130
            D +V+GAG AG S  Y LS +    + ++E+   PG  +
Sbjct: 10  ADYLVIGAGIAGASTGYWLSAHGR--VVVLEREAQPGYHS 47

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} Length = 399

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 25/151 (16%), Positives = 50/151 (33%), Gaps = 29/151 (19%)

Query: 82  MTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS-----------VSPGG-- 128
           MTD       DV++ G G  G   AY L +    ++ ++EQ+           + P G  
Sbjct: 2   MTDN----HIDVLINGCGIGGAMLAYLLGRQ-GHRVVVVEQARRERAINGADLLKPAGIR 56

Query: 129 -----GAW-----LGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMS 178
                G        GG++   + V     +         D +  ++++   +L    ++ 
Sbjct: 57  VVEAAGLLAEVTRRGGRVRHELEVYHDGELLRYFNYSSVDARGYFILMPCESL-RRLVLE 115

Query: 179 KLLARPNVKLFNAVAAEDLIVKGGRVGGVVT 209
           K+     V++      E +          V 
Sbjct: 116 KIDGEATVEMLFETRIEAVQRDERHAIDQVR 146

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A* Length = 602

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 37/169 (21%), Positives = 61/169 (36%), Gaps = 53/169 (31%)

Query: 91  TDVVVVGAGSAGLSCAYELSK-NPNIQIAIIEQ-------SVSPGGGA------------ 130
            D+ +VGAG AGL  A   ++ NPN +IA+I +       +V+  GG+            
Sbjct: 6   ADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEY 65

Query: 131 ----------WLGGQ-LFSAMVVRKPAHIF-LDELGIDYDEQDN---------------- 162
                     WL  Q +    V   P  +  L+  G  +  + +                
Sbjct: 66  HFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIERT 125

Query: 163 -YVVIK--HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVV 208
            +   K     L   T+    L  P ++ F+     D++V  G V G+V
Sbjct: 126 WFAADKTGFHMLH--TLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLV 172

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* Length = 397

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 10/35 (28%)

Query: 77  MTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSK 111
           MT  Y          DVVVVG G  GL+ A+++++
Sbjct: 1   MTESY----------DVVVVGGGPVGLATAWQVAE 25

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* Length = 545

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 82  MTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG 128
           M++       D VV+GAG  G+  A+ +     +++  IE     GG
Sbjct: 1   MSNRAKSPALDAVVIGAGVTGIYQAFLI-NQAGMKVLGIEAGEDVGG 46

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti} Length = 526

 Score = 42.5 bits (101), Expect = 2e-04
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 7/47 (14%)

Query: 77  MTRRYMTDMITYADTDVVVVGAGSAGLSC--AYELSKNPNIQIAIIE 121
           MTR  +         D+V+VG GSAG     A  LS++P+ ++ +IE
Sbjct: 7   MTRAKVEHAPNC---DIVIVGGGSAG--SLLAARLSEDPDSRVLLIE 48

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} Length = 372

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 7/38 (18%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 90  DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPG 127
             D++++G+GS G +  Y  ++   + + + +  + P 
Sbjct: 2   KYDLIIIGSGSVGAAAGYYATRA-GLNVLMTDAHMPPH 38

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852

 Score = 42.3 bits (98), Expect = 2e-04
 Identities = 17/91 (18%), Positives = 37/91 (40%), Gaps = 10/91 (10%)

Query: 85  MITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW---LGGQLFS--A 139
           + T     V+++G+G +GL+ A +L     + + ++E     GG       G  +    A
Sbjct: 273 LPTKKTGKVIIIGSGVSGLAAARQLQSF-GMDVTLLEARDRVGGRVATFRKGNYVADLGA 331

Query: 140 MVVRK----PAHIFLDELGIDYDEQDNYVVI 166
           MVV      P  +   ++ ++  +      +
Sbjct: 332 MVVTGLGGNPMAVVSKQVNMELAKIKQKCPL 362

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* Length = 409

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 16/98 (16%), Positives = 31/98 (31%), Gaps = 15/98 (15%)

Query: 93  VVVVGAGSAGLSCAYELSK--NPNIQIAIIEQS----VSPGGGAWLGGQLFSAMVVRKPA 146
           V+V+G     L+ AY L +       + +I +S      P     +   +     ++   
Sbjct: 4   VLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRP-ALPHVAIGVRDVDELKVDL 62

Query: 147 HIFLDELGIDY--------DEQDNYVVIKHAALFTSTI 176
              L E GI +        D + + V         +  
Sbjct: 63  SEALPEKGIQFQEGTVEKIDAKSSMVYYTKPDGSMAEE 100

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* Length = 495

 Score = 41.9 bits (98), Expect = 2e-04
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW 131
           DV+V+G G  GL+   +L+     +  ++E     GG +W
Sbjct: 41  DVIVIGGGYCGLTATRDLTVA-GFKTLLLEARDRIGGRSW 79

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} Length = 382

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 1/41 (2%)

Query: 91  TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW 131
           +++VV+G G  G++ A+EL+K    ++ +IE+     G  +
Sbjct: 6   SEIVVIGGGIVGVTIAHELAKR-GEEVTVIEKRFIGSGSTF 45

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus} Length = 549

 Score = 41.5 bits (97), Expect = 3e-04
 Identities = 24/184 (13%), Positives = 57/184 (30%), Gaps = 48/184 (26%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS-------------------------- 125
             +V+G G  GL     L++       I+E+                             
Sbjct: 109 RPIVIGFGPCGLFAGLVLAQ-MGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFG 167

Query: 126 -PGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFT------STIMS 178
             G G +  G+L+S +         +    ++    +  + +    + T         M 
Sbjct: 168 EGGAGTFSDGKLYSQVKDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMR 227

Query: 179 KLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSC 238
             +     ++  +   +DL ++ G++ GV  +              +   ++++ VV + 
Sbjct: 228 ATIIELGGEIRFSTRVDDLHMEDGQITGVTLS--------------NGEEIKSRHVVLAV 273

Query: 239 GHDG 242
           GH  
Sbjct: 274 GHSA 277

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A* Length = 643

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 14/74 (18%), Positives = 32/74 (43%), Gaps = 13/74 (17%)

Query: 67  PIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELS---KNPNIQIAIIEQ- 122
                           T+++   +TD++++G G +G   AYE +   K   +++ ++E+ 
Sbjct: 2   VYYPKKYELYKADEVPTEVV---ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKA 58

Query: 123 ------SVSPGGGA 130
                 +V+ G  A
Sbjct: 59  AVERSGAVAQGLSA 72

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Length = 421

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 90  DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSP 126
             DV+V+GAG AG   A  ++K+   ++ I+E+   P
Sbjct: 5   KVDVLVIGAGPAGTVAASLVNKS-GFKVKIVEKQKFP 40

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A* Length = 583

 Score = 41.4 bits (98), Expect = 4e-04
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 74  SREMTRRYMTDMITYADT--DVVVVGAGSAGLSCAYELSKNPNIQIAIIE 121
           S  +    +TD    +    D ++ G G  GL+ A  L++NPNI + +IE
Sbjct: 1   SNGIEASLLTDPKDVSGRTVDYIIAGGGLTGLTTAARLTENPNISVLVIE 50

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} Length = 417

 Score = 40.9 bits (97), Expect = 4e-04
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 5/51 (9%)

Query: 77  MTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPG 127
           +  + M         DVV++GAG+AG+ CA E  K    ++ +I+ + +PG
Sbjct: 18  LYFQSMV-AEKQ---DVVIIGAGAAGMMCAIEAGKR-GRRVLVIDHARAPG 63

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1 Length = 587

 Score = 41.0 bits (97), Expect = 5e-04
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)

Query: 79  RRYMTDMITYADT--DVVVVGAGSAGLSCAYELSKNPNIQIAIIE 121
              ++D    A    D ++ G G  GL+ A +L++NP I++ +IE
Sbjct: 11  SSLLSDPSKVAGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIE 55

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A* Length = 546

 Score = 41.0 bits (97), Expect = 5e-04
 Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 77  MTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIE 121
           M    + ++ +  + D +VVG GSAG + A  LS++P + +A++E
Sbjct: 1   MHIDNIENL-SDREFDYIVVGGGSAGAAVAARLSEDPAVSVALVE 44

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A* Length = 721

 Score = 41.0 bits (94), Expect = 5e-04
 Identities = 21/119 (17%), Positives = 38/119 (31%), Gaps = 15/119 (12%)

Query: 27  GAPMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTRRYMTDMI 86
           G  + P LL L+  K        I+ +             P   ++VS  +        +
Sbjct: 1   GVTVIPRLLGLKDEKK-------IATTVGEARLSGINYRHPDS-ALVSYPVAAAAPLGRL 52

Query: 87  TYADTDVVVVGAGSAGLSCAYELSK-------NPNIQIAIIEQSVSPGGGAWLGGQLFS 138
              +  + +VG G+ G++  YEL +          I + I E           G +   
Sbjct: 53  PAGNYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSFLHDRPGIKAIK 111

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* Length = 389

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 12/20 (60%), Positives = 17/20 (85%)

Query: 92  DVVVVGAGSAGLSCAYELSK 111
           DV+VVGAGS G++  Y+L+K
Sbjct: 5   DVIVVGAGSMGMAAGYQLAK 24

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* Length = 351

 Score = 40.4 bits (94), Expect = 6e-04
 Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 5/72 (6%)

Query: 93  VVVVGAGSAGLSCAYELSKN-----PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAH 147
           VVV+GAG  GLS A  + +        + I +     +P     +   L+   +      
Sbjct: 3   VVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLTTTDVAAGLWQPYLSDPNNP 62

Query: 148 IFLDELGIDYDE 159
              D     +D 
Sbjct: 63  QEADWSQQTFDY 74

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} Length = 425

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 20/81 (24%), Positives = 28/81 (34%), Gaps = 19/81 (23%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG--------------GAWLGGQLF 137
             VV+GAG  GL  A  LSK    ++ + E+    GG              GA+      
Sbjct: 2   KTVVIGAGLGGLLSAARLSKA-GHEVEVFERLPITGGRFTNLSYKGFQLSSGAF----HM 56

Query: 138 SAMVVRKPAHIFLDELGIDYD 158
                  P   FL E+    +
Sbjct: 57  LPNGPGGPLACFLKEVEASVN 77

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	356
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	100.0
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	100.0
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	99.98
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	99.93
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	99.73
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	99.73
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	99.68
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	99.61
2cul_A	232	Glucose-inhibited division protein A-related PROT	99.6
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	99.59
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	99.57
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	99.57
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	99.54
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	99.53
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	99.52
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	99.5
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	99.5
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	99.49
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	99.49
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	99.49
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	99.48
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	99.47
3dme_A	369	Conserved exported protein; structural genomics, P	99.47
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	99.46
3atr_A	453	Conserved archaeal protein; saturating double bond	99.46
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	99.46
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	99.43
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	99.42
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	99.42
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	99.41
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	99.39
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.39
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	99.38
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	99.38
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	99.38
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	99.37
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	99.37
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	99.36
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	99.36
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	99.35
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	99.35
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	99.34
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	99.34
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	99.34
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	99.33
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	99.32
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.32
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	99.32
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	99.31
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	99.31
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	99.3
4fk1_A	304	Putative thioredoxin reductase; structural genomic	99.29
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	99.29
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	99.28
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	99.28
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	99.27
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	99.26
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	99.26
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	99.26
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	99.26
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	99.25
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	99.23
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	99.23
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	99.22
2bry_A	497	NEDD9 interacting protein with calponin homology a	99.21
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	99.21
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	99.21
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	99.2
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	99.2
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	99.2
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	99.2
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	99.19
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	99.19
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	99.19
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	99.19
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	99.18
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	99.18
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	99.18
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	99.16
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	99.15
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	99.15
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	99.15
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	99.14
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	99.14
4hb9_A	412	Similarities with probable monooxygenase; flavin,	99.14
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	99.14
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.13
1ojt_A	482	Surface protein; redox-active center, glycolysis,	99.12
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	99.12
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	99.12
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	99.12
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	99.11
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	99.11
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	99.1
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	99.1
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	99.1
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	99.08
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	99.07
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	99.07
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	99.07
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	99.06
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	99.06
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	99.05
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	99.05
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.05
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	99.05
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	99.04
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	99.03
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	99.03
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	99.02
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	99.02
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	99.02
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	99.02
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	99.01
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	99.01
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	99.01
3r9u_A	315	Thioredoxin reductase; structural genomics, center	99.0
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	98.99
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.99
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	98.99
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.99
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	98.98
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.98
4dna_A	463	Probable glutathione reductase; structural genomic	98.97
1fec_A	490	Trypanothione reductase; redox-active center, oxid	98.97
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.96
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.96
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.95
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.95
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.94
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	98.93
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.92
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.91
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.91
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	98.91
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.9
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.89
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.89
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.88
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	98.87
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	98.86
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	98.86
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	98.83
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	98.83
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	98.83
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	98.82
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	98.82
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	98.78
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	98.73
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	98.73
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	98.72
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	98.71
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.69
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.68
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	98.68
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	98.66
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.64
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	98.64
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	98.63
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.63
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	98.62
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.59
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	98.59
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.58
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	98.58
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	98.58
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	98.56
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.55
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.55
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.54
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	98.53
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	98.53
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.52
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.52
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.51
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.51
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	98.47
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.46
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	98.45
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	98.43
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	98.42
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.41
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	98.41
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	98.41
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.4
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	98.39
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.38
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.38
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.36
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	98.35
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.34
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	98.33
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.32
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.31
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.3
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	98.3
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	98.3
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	98.29
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.29
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	98.28
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	98.27
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	98.27
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.27
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.26
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.26
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	98.25
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.22
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.22
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.21
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	98.21
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.21
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	98.2
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.2
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.2
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.19
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	98.19
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.19
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.18
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	98.18
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	98.17
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.16
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	98.15
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	98.13
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	98.13
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.13
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.12
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.12
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.1
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.1
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.1
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.1
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	98.09
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.09
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.08
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	98.08
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.07
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.06
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.05
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.04
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.04
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.04
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	98.03
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.03
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.02
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.02
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.01
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.01
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	98.0
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.0
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.0
4dna_A	463	Probable glutathione reductase; structural genomic	97.98
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	97.97
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	97.96
1fec_A	490	Trypanothione reductase; redox-active center, oxid	97.96
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	97.94
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	97.94
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	97.94
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	97.93
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	97.92
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	97.92
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	97.91
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	97.9
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	97.89
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	97.88
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	97.86
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	97.86
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	97.71
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	97.69
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	97.68
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	97.66
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	97.65
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	97.61
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	97.59
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	97.58
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	97.57
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.55
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	97.46
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	97.45
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	97.38
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	97.29
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.22
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	97.19
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	97.18
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	97.13
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	97.12
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.1
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	96.67
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	96.65
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	96.61
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	96.5
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	96.47
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	96.46
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	96.44
4fk1_A	304	Putative thioredoxin reductase; structural genomic	96.25
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	96.19
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	96.1
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	95.54
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	95.49
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	94.89
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	94.71
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	94.7
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	94.64
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	94.44
1id1_A	153	Putative potassium channel protein; RCK domain, E.	94.16
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	93.72
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	93.71
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	92.91
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	92.89
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	92.81
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	92.67
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	92.45
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	92.15
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	92.04
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	91.67
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	91.66
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	91.59
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	91.41
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	91.28
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	90.81
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	90.63
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	90.56
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	90.54
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	90.32
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	90.18
4g65_A	461	TRK system potassium uptake protein TRKA; structur	90.17
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	90.1
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	90.09
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	90.06
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	90.04
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	89.76
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	89.63
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	89.57
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	89.18
4ezb_A	317	Uncharacterized conserved protein; structural geno	89.06
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	88.95
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	88.93
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	88.92
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	88.9
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	88.86
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	88.72
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	88.68
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	88.67
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	88.57
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	88.49
3tl2_A	315	Malate dehydrogenase; center for structural genomi	88.48
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	88.25
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	88.17
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	88.14
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	88.04
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	88.03
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	88.02
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	88.01
3c85_A	183	Putative glutathione-regulated potassium-efflux S	87.93
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	87.71
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	87.68
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	87.61
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	87.49
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	87.46
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	87.16
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	87.11
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	87.01
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	86.86
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	86.77
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	86.49
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	86.49
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	86.38
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	86.3
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	86.27
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	86.23
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	86.2
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	86.0
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	85.95
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	85.77
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	85.66
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	85.6
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	85.59
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	85.55
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	85.54
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	85.32
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	85.28
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	85.23
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	85.19
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	85.18
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	85.14
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	85.11
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	85.08
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	84.98
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	84.97
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	84.96
3qha_A	296	Putative oxidoreductase; seattle structural genomi	84.83
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	84.58
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	84.49
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	84.4
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	84.39
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	84.38
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	84.37
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	84.23
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	84.2
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	84.18
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	84.11
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	84.02
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	83.77
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	83.7
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	83.54
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	83.53
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	83.44
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	83.37
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	83.29
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	83.13
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	82.97
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	82.92
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	82.86
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	82.81
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	82.7
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	82.69
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	82.63
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	82.6
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	82.59
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	82.58
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	82.56
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	82.51
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	82.48
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	82.46
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	82.41
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	82.37
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	82.34
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	82.21
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	82.19
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	82.19
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	82.09
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	82.07
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	81.89
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	81.8
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	81.76
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	81.73
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	81.69
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	81.68
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	81.64
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	81.5
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	81.49
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	81.37
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	81.3
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	81.17
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	81.11
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	81.08
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	81.06
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	81.03
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	80.86
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	80.76
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	80.65
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	80.64
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	80.55
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	80.4
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	80.39
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	80.26
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	80.15
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	80.03

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=100.00  E-value=3.1e-40  Score=311.93  Aligned_cols=275  Identities=63%  Similarity=1.026  Sum_probs=240.0

Q ss_pred             CCC--CCCccCCCccchhhHHHHHHHhhhcccCCcccEEEECCCHHHHHHHHHhhcC-CCCeEEEEeccCCCCCccccCC
Q 018414           58 YDL--NTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLGG  134 (356)
Q Consensus        58 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~DVvIIGgG~aGl~aA~~La~~-~G~~V~llEk~~~~Gg~~~~~g  134 (356)
                      .+|  +.|.|.++.+..+++.+.++|+..+....+|||+|||||++|+++|+.|+++ +|++|+|||+...+|+++|.++
T Consensus        45 ~~~~~~~~~f~~i~~~~isra~~~~~~~~~~~~~~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~~~g  124 (344)
T 3jsk_A           45 PTLGTDAFTFSPIRESTVSRAMTRRYFADLDAHAETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGG  124 (344)
T ss_dssp             GGTTSTTCCCCCCCHHHHHHHHHHHHHHHHHHHHBCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTTCCB
T ss_pred             cccccCCcCcccccHHHHHHHHHHhhhhhhcccCcCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccccCC
Confidence            356  7889999999999999999998876666679999999999999999999984 5899999999999999999888


Q ss_pred             ccchhhhccchHHHHHHHhCCCccccCCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeC-------------
Q 018414          135 QLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-------------  201 (356)
Q Consensus       135 ~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~-------------  201 (356)
                      +.+..........++++++|++|.....|+...+..++.+.|++.+.+..|+++++++.++++..++             
T Consensus       125 ~~~~~~~~~~~~~~~L~~~Gv~~~~~G~~~~~~~~~d~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~  204 (344)
T 3jsk_A          125 QLFSAMVMRKPADVFLDEVGVPYEDEGDYVVVKHAALFTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGE  204 (344)
T ss_dssp             TTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCHHHHHHHHHHHHHTCTTEEEEETEEEEEEEEEEC------------
T ss_pred             ccchhhhcchHHHHHHHHcCCcccccCCeEEEecHHHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccc
Confidence            8887777667778999999999987767877777888899999998855799999999999999876             


Q ss_pred             ----C--eEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCCCCccchhhhccCcccccccccccccccccce
Q 018414          202 ----G--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDA  275 (356)
Q Consensus       202 ----~--~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  275 (356)
                          +  +|.||.++|..+..++....+.+..+|+|++||+|||+.+++.+...+++.+++....++++.++|++..++.
T Consensus       205 ~~~~g~~rV~GVv~~~~~v~~~g~~~~~~d~~~i~Ak~VV~ATG~~s~v~~~~~~~l~~~~~~~~~~g~~~~~~~~~e~~  284 (344)
T 3jsk_A          205 AEDEAKVRIAGVVTNWTLVSMHHDDQSAMDPNTINAPVIISTTGHDGPFGAFSVKRLVSMKQMERLNGMRGLDMQSAEDA  284 (344)
T ss_dssp             ----CCEEEEEEEEEEHHHHTTSSSSSCCBCEEEECSEEEECCCSSSSSSCHHHHHHHHTTSSSCCCCCEEECHHHHHHH
T ss_pred             cccCCCceEeEEEeeeeeeeccCCcccccCceEEEcCEEEECCCCCchhhHHHHHHHhhcCcccccCCCcccccccchhh
Confidence                3  8889988765444443332234567899999999999999999888999999998777899999999999999


Q ss_pred             eeeccccccCceeEeceEEEEecCCcccCCccceeeeehHHHHHHHHHHhCCCCCCC
Q 018414          276 IVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALD  332 (356)
Q Consensus       276 ~~~~~~e~~~g~~~~~~~~~~~~g~~~~~~~~g~~l~sG~~~~~l~l~~~~~~~~~~  332 (356)
                      ++..++|++||+++.||++..++|.+||||.||.|++||.+++++|+++|+.....+
T Consensus       285 ~v~~t~~v~~gl~~~gm~~~~~~g~~rmgp~fg~m~~sg~~~a~~~~~~~~~~~~~~  341 (344)
T 3jsk_A          285 IVNNTREIVPGLIVGGMELSEIDGANRMGPTFGAMALSGVKAAHEAIRVFDLRKAQN  341 (344)
T ss_dssp             HHHTCEEEETTEEECGGGHHHHHTCEECCSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccCceEcCCEEEechhhHhhcCCCCCCcccceeeecCHHHHHHHHHHHHhhhhhc
Confidence            999999999999999999999999999999999999999999999999997765443

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=100.00  E-value=2.8e-34  Score=269.82  Aligned_cols=268  Identities=58%  Similarity=0.963  Sum_probs=223.9

Q ss_pred             CCCCCccCCCccchhhHHHHHHHhhhcccCCcccEEEECCCHHHHHHHHHhhcC-CCCeEEEEeccCCCCCccccCCccc
Q 018414           59 DLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLGGQLF  137 (356)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~DVvIIGgG~aGl~aA~~La~~-~G~~V~llEk~~~~Gg~~~~~g~~~  137 (356)
                      +|..+.+.++.+....+.+..+++..|....++||+|||||++|+++|+.|++. +|++|+|+|+...+|++.|.++..+
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~~~g~~~  113 (326)
T 2gjc_A           34 DWSDFKFAPIRESTVSRAMTSRYFKDLDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLF  113 (326)
T ss_dssp             TCTTCCCCCCCHHHHHHHHHHHHHHHHHHTTEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCGGGC
T ss_pred             CCCccccccccccccchhhhhhhhhhhcccCcCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccccccccCccc
Confidence            344455666667777788888888887777789999999999999999999984 4899999999999999999887777


Q ss_pred             hhhhccchHHHHHHHhCCCccccCCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEe---C-C--eEEEEEEcc
Q 018414          138 SAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK---G-G--RVGGVVTNW  211 (356)
Q Consensus       138 ~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~---~-~--~v~gv~~~~  211 (356)
                      ...........++.++|++|.....++...+...+...|++++.+..|++++++++|+++..+   + +  +|.||.++|
T Consensus       114 ~~~~~~~~~~~~L~~~Gv~~~~~g~~~~~~~~~~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV~GVvv~~  193 (326)
T 2gjc_A          114 SAMVMRKPAHLFLQELEIPYEDEGDYVVVKHAALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNW  193 (326)
T ss_dssp             CCEEEETTTHHHHHHTTCCCEECSSEEEESCHHHHHHHHHHHHHTSTTEEEETTEEEEEEEECCCC-----CEEEEEEEE
T ss_pred             chhhhhhHHHHHHHhhCcccccCCCeEEEcchHHHHHHHHHHHHHhcCcEEEecceeeeeeecccccCCCcEEEEEEecc
Confidence            666666667889999999998777777777888888999998886679999999999999987   3 5  899998876


Q ss_pred             eeeecccCCCCCCCCeEEEc---------------CEEEEcCCCCCCCCCccchhhhccCccccccccccccccccccee
Q 018414          212 ALVSMNHDTQSCMDPNVMEA---------------KVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAI  276 (356)
Q Consensus       212 ~~~~~~~~~~~~g~~~~i~A---------------k~VI~AtGg~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  276 (356)
                      ..+..++....+.+..++.|               |.||+|||+.+++++...+.+..++....++++.++|++..++.+
T Consensus       194 ~~v~~~g~~~~~~d~~~I~A~G~~~~~~~~~~~~~~~VV~ATG~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~e~~~  273 (326)
T 2gjc_A          194 TLVTQAHGTQCCMDPNVIELAGYKNDGTRDLSQKHGVILSTTGHDGPFGAFCAKRIVDIDQNQKLGGMKGLDMNHAEHDV  273 (326)
T ss_dssp             HHHHTC---CCCCCCEEEEESCCCSSSCCCSSTTCCEEEECCCCC--CCSHHHHHHHHHHSSCCCCCCCCBCHHHHHHHH
T ss_pred             eeecccccceeccCceEEEEeeccccccccccccCCEEEECcCCCchHHHHHHhhccccccccccCceeccccccchhhe
Confidence            54333332223345678999               999999999999998777777777777789999999999999999


Q ss_pred             eecccc--ccCceeEeceEEEEecCCcccCCccceeeeehHHHHHHHHHHhC
Q 018414          277 VRLTRE--VVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLG  326 (356)
Q Consensus       277 ~~~~~e--~~~g~~~~~~~~~~~~g~~~~~~~~g~~l~sG~~~~~l~l~~~~  326 (356)
                      ++.+++  ++||+++.||++..++|.+||+|.||.|++||.+++++|+++|.
T Consensus       274 ~~~~~~~~~~~~~~~~g~~~~~~~~~~r~g~~fg~m~~sg~~~a~~~~~~~~  325 (326)
T 2gjc_A          274 VIHSGAYAGVDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQILKHFA  325 (326)
T ss_dssp             HHHCEECTTSTTEEECTHHHHHHHTCCBCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             eecCCCccccCCEEECChHHHHhcCCCCCChhhhhhhhhhHHHHHHHHHHhh
Confidence            999999  99999999999999999999999999999999999999999874

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=99.98  E-value=1.1e-31  Score=249.13  Aligned_cols=280  Identities=90%  Similarity=1.349  Sum_probs=217.4

Q ss_pred             CCCCCCCCCccCCCccchhhHHHHHHHhhhcccCCcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCC
Q 018414           55 SPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGG  134 (356)
Q Consensus        55 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g  134 (356)
                      .++++|+.|.|.+++|...++.|.++|+..|..+.++||+|||||++|+++|+.|++++|.+|+||||...+|+++|.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~~~~   83 (284)
T 1rp0_A            4 SAGYDLNAFTFDPIKESIVSREMTRRYMTDMITYAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGG   83 (284)
T ss_dssp             ---CCTTSCCCCCCCHHHHHHHHHHHHHHHHHHHTEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCS
T ss_pred             ccCCCCcceeeeccchhhhHHHHHHHHHHhhhhccccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCceecCC
Confidence            46788999999999999999999999998776666799999999999999999999943899999999999998888877


Q ss_pred             ccchhhhccchHHHHHHHhCCCccccCCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceee
Q 018414          135 QLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALV  214 (356)
Q Consensus       135 ~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~  214 (356)
                      +.+..+.......+|++++|++|.....+....+...+...|++++.++.|++++++++|+++..+++++.++.+.+..+
T Consensus        84 ~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~  163 (284)
T 1rp0_A           84 QLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALV  163 (284)
T ss_dssp             TTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCHHHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHH
T ss_pred             cchHHHHcCcHHHHHHHHcCCCcccCCCEEEecCHHHHHHHHHHHHHhcCCCEEEcCcEEEEEEecCCeEEEEEEecccc
Confidence            77666666666778999999999877666666677888888888887667999999999999999888888887753111


Q ss_pred             ecccCCCCCCCCeEEEcCEEEEcCCCCCCCCCccchhhhccCcccccccccccccccccceeeeccccccCceeEeceEE
Q 018414          215 SMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEV  294 (356)
Q Consensus       215 ~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~~~~~~  294 (356)
                      .++..++.+++..+++||.||+|+|+.+.......+.+...++...+....+++.+..+..++...++++|+++..|+.+
T Consensus       164 ~~~~~~g~~g~~~~i~ad~VV~AtG~~s~~~~~~~~~~~~~g~~~~v~~~~g~~~~~~~~~~v~~~~~~~p~i~a~G~~~  243 (284)
T 1rp0_A          164 AQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEV  243 (284)
T ss_dssp             HTCTTTSSCCCCEEEEEEEEEECCCSSSTTTTHHHHHHHHTTSSSCCCCCEEECHHHHHHHHHHHCEEEETTEEECTHHH
T ss_pred             ccccCccccCceEEEECCEEEECCCCchHHHHHHHHHhhhccCCCCcCCcCCchhhhhhHHHhhccccccCCEEEEeeeh
Confidence            11111111234578999999999999887665444444444433334444555554333333444556779999999987


Q ss_pred             EEecCCcccCCccceeeeehHHHHHHHHHHhCCCCCCCCc
Q 018414          295 AEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGT  334 (356)
Q Consensus       295 ~~~~g~~~~~~~~g~~l~sG~~~~~l~l~~~~~~~~~~~~  334 (356)
                      ...++.++++|.|+.|+.||+.++..++++|++....+++
T Consensus       244 ~~~~g~~~~gp~~~~~~~sG~~~a~~i~~~l~~~~~~~~~  283 (284)
T 1rp0_A          244 AEIDGAPRMGPTFGAMMISGQKAGQLALKALGLPNAIDGT  283 (284)
T ss_dssp             HHHHTCEECCSCCHHHHHHHHHHHHHHHHHTTCCCTTTTC
T ss_pred             hhhcCCCCcChHHHHHHHhHHHHHHHHHHHhhhhhhhhcC
Confidence            7788999999999999999999999999999988877664

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=99.73  E-value=3.4e-17  Score=159.58  Aligned_cols=212  Identities=20%  Similarity=0.345  Sum_probs=135.6

Q ss_pred             HHHhhhcccCCcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccC----------Cccchhh--------
Q 018414           79 RRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLG----------GQLFSAM--------  140 (356)
Q Consensus        79 ~~~~~~m~~~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~----------g~~~~~~--------  140 (356)
                      .+|+..|+ +.++||+|||||++|+++|+.|+++ |.+|+|+|+...+|+.....          ......+        
T Consensus        17 n~~~~~M~-~~~~dViIIGgG~AGl~aA~~La~~-G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~   94 (417)
T 3v76_A           17 NLYFQSMV-AEKQDVVIIGAGAAGMMCAIEAGKR-GRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFC   94 (417)
T ss_dssp             ------------CCEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTT
T ss_pred             cccccccc-CCCCCEEEECcCHHHHHHHHHHHHC-CCcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHH
Confidence            34444443 2469999999999999999999999 99999999998776432110          0001100        


Q ss_pred             ---h---ccchHHHHHHHhCCCccccCC--eEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcce
Q 018414          141 ---V---VRKPAHIFLDELGIDYDEQDN--YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWA  212 (356)
Q Consensus       141 ---~---~~~~~~~~l~~~G~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~  212 (356)
                         +   ......+|++++|+++.....  .........+.+.|.+.+. +.|++++++++|+++..+++.+ .|.+.  
T Consensus        95 ~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~~~~~~~~l~~~L~~~l~-~~Gv~i~~~~~V~~i~~~~~~~-~V~~~--  170 (417)
T 3v76_A           95 KSALARYRPQDFVALVERHGIGWHEKTLGQLFCDHSAKDIIRMLMAEMK-EAGVQLRLETSIGEVERTASGF-RVTTS--  170 (417)
T ss_dssp             HHHHHHSCHHHHHHHHHHTTCCEEECSTTEEEESSCHHHHHHHHHHHHH-HHTCEEECSCCEEEEEEETTEE-EEEET--
T ss_pred             HHHHHhcCHHHHHHHHHHcCCCcEEeeCCEEeeCCCHHHHHHHHHHHHH-HCCCEEEECCEEEEEEEeCCEE-EEEEC--
Confidence               0   011345778888988765532  2223456778888888876 5699999999999999887753 34443  


Q ss_pred             eeecccCCCCCCCCeEEEcCEEEEcCCCCCC--CCC--ccchhhhccCc--cccccccccccccccc-ceeeeccccccC
Q 018414          213 LVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP--FGA--TGVKRLKSIGM--IEEVPGMKALDMNSAE-DAIVRLTREVVP  285 (356)
Q Consensus       213 ~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~--~~~--~~~~~~~~~g~--~~~~~~~~~~~~~~~~-~~~~~~~~e~~~  285 (356)
                                   ..+++||.||+|||+++.  .+.  .+++.+...|+  .+..|.++++.+.... .++..+     +
T Consensus       171 -------------~g~i~ad~VIlAtG~~S~p~~gs~g~g~~la~~~G~~i~~~~p~l~~~~~~~~~~~~~~~l-----~  232 (417)
T 3v76_A          171 -------------AGTVDAASLVVASGGKSIPKMGATGLAYRIAEQFGLPVVETRPALVPLTLDQAQLAKLGAL-----A  232 (417)
T ss_dssp             -------------TEEEEESEEEECCCCSSCGGGTCCCHHHHHHHHTTCCEEEEEEESCCEECCHHHHHHTGGG-----T
T ss_pred             -------------CcEEEeeEEEECCCCccCCCCCCCcHHHHHHHHCCCCEecccceeeeEEecCccccccccC-----C
Confidence                         137999999999999872  222  56778888887  5667778885544211 222333     7


Q ss_pred             ceeEeceEEEEecCCcccCCccceee-----eehHHHHHH
Q 018414          286 GMIVTGMEVAEIDGAPRMGPTFGAMM-----ISGQKAAHL  320 (356)
Q Consensus       286 g~~~~~~~~~~~~g~~~~~~~~g~~l-----~sG~~~~~l  320 (356)
                      |+.+. ..+.+  +..   ...|+++     +|||.++++
T Consensus       233 G~~~~-~~~~~--~~~---~~~~~~lft~~G~sGp~il~~  266 (417)
T 3v76_A          233 GVAAD-AEARF--GKA---AFREAVLITHRGLSGPAILQI  266 (417)
T ss_dssp             TCEEE-EEEEE--TTE---EEEEEEEECSSEEESHHHHHH
T ss_pred             CCcee-EEEEE--CCE---eeeeeeEEECCCcchHHHHHH
Confidence            87775 44433  211   1235666     899999884

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=99.73  E-value=6.3e-17  Score=159.03  Aligned_cols=164  Identities=20%  Similarity=0.330  Sum_probs=114.1

Q ss_pred             CCcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCC---------ccchhh--------------h---
Q 018414           88 YADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGG---------QLFSAM--------------V---  141 (356)
Q Consensus        88 ~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g---------~~~~~~--------------~---  141 (356)
                      .+++||+|||||++|+++|+.|+++ |.+|+||||...+|+.....+         ..+..+              +   
T Consensus        24 ~~~~dVvIIGgG~aGl~aA~~la~~-G~~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (447)
T 2i0z_A           24 AMHYDVIVIGGGPSGLMAAIGAAEE-GANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIF  102 (447)
T ss_dssp             -CCCSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHS
T ss_pred             cCCCCEEEECCcHHHHHHHHHHHHC-CCCEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHHHHhc
Confidence            3469999999999999999999999 999999999987764321110         000010              0   


Q ss_pred             ccchHHHHHHHhCCCccccCCeEEE---echHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeeccc
Q 018414          142 VRKPAHIFLDELGIDYDEQDNYVVI---KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH  218 (356)
Q Consensus       142 ~~~~~~~~l~~~G~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~  218 (356)
                      ......+|+..+|+++........+   .....+.+.|.+.+. +.|++++++++|+++..+++++.+|.+.+       
T Consensus       103 ~~~~~~~~~~~~G~~~~~~~~g~~~p~~~~~~~l~~~L~~~~~-~~GV~i~~~~~V~~i~~~~~~v~~V~~~~-------  174 (447)
T 2i0z_A          103 NNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLK-DLGVKIRTNTPVETIEYENGQTKAVILQT-------  174 (447)
T ss_dssp             CHHHHHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHH-HTTCEEECSCCEEEEEEETTEEEEEEETT-------
T ss_pred             CHHHHHHHHHhcCCceEEeeCCEEECCCCCHHHHHHHHHHHHH-HCCCEEEeCcEEEEEEecCCcEEEEEECC-------
Confidence            0113457788889887654322222   245778888888887 57999999999999998888888887742       


Q ss_pred             CCCCCCCCeEEEcCEEEEcCCCCCC--CCC--ccchhhhccCc--cccccccccc
Q 018414          219 DTQSCMDPNVMEAKVVVSSCGHDGP--FGA--TGVKRLKSIGM--IEEVPGMKAL  267 (356)
Q Consensus       219 ~~~~~g~~~~i~Ak~VI~AtGg~~~--~~~--~~~~~~~~~g~--~~~~~~~~~~  267 (356)
                             ..+++||.||+|||+++.  .+.  .++..+...|+  ....|.+.++
T Consensus       175 -------G~~i~Ad~VVlAtGg~s~~~~g~tG~g~~la~~~G~~~~~~~p~~~~~  222 (447)
T 2i0z_A          175 -------GEVLETNHVVIAVGGKSVPQTGSTGDGYAWAEKAGHTITELFPTEVPI  222 (447)
T ss_dssp             -------CCEEECSCEEECCCCSSSGGGSCSSHHHHHHHHTTCCEEEEEECSCCE
T ss_pred             -------CCEEECCEEEECCCCCcCCCCCCCcHHHHHHHHCCCCcccCcceeeee
Confidence                   246999999999999872  222  45666777776  3344555553

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=99.68  E-value=9.3e-16  Score=148.69  Aligned_cols=204  Identities=16%  Similarity=0.226  Sum_probs=132.3

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCc--------c--ccCCccchhhhc--------------cch
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG--------A--WLGGQLFSAMVV--------------RKP  145 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~--------~--~~~g~~~~~~~~--------------~~~  145 (356)
                      +|||+|||||++|+++|+.|+++ |.+|+|+||...+|+.        |  .+.++.+..++.              ...
T Consensus         4 ~~dViIIGgG~aGl~aA~~la~~-G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   82 (401)
T 2gqf_A            4 YSENIIIGAGAAGLFCAAQLAKL-GKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWD   82 (401)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHH
T ss_pred             CCCEEEECCcHHHHHHHHHHHhC-CCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCHHH
Confidence            58999999999999999999999 9999999999876532        1  111111111110              112


Q ss_pred             HHHHHHHhCCCccccCCeEEEe--chHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEe----CCeEEEEEEcceeeecccC
Q 018414          146 AHIFLDELGIDYDEQDNYVVIK--HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK----GGRVGGVVTNWALVSMNHD  219 (356)
Q Consensus       146 ~~~~l~~~G~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~----~~~v~gv~~~~~~~~~~~~  219 (356)
                      ..+|+.++|+++........+.  +...+.+.|.+.+. +.|++++++++|+++..+    ++.+ .+.+.         
T Consensus        83 ~~~~~~~~Gi~~~~~~~g~~~p~~~~~~l~~~L~~~~~-~~Gv~i~~~~~v~~i~~~~~g~~~~~-~v~~~---------  151 (401)
T 2gqf_A           83 FISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECD-KYGAKILLRSEVSQVERIQNDEKVRF-VLQVN---------  151 (401)
T ss_dssp             HHHHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHH-HHTCEEECSCCEEEEEECCSCSSCCE-EEEET---------
T ss_pred             HHHHHHhCCCceEECcCCEEccCCCHHHHHHHHHHHHH-HCCCEEEeCCEEEEEEcccCcCCCeE-EEEEC---------
Confidence            4578888999876543222222  56777788887776 579999999999999876    4543 34442         


Q ss_pred             CCCCCCCeEEEcCEEEEcCCCCCC--CCC--ccchhhhccCc--cccccccccccccccccee-eeccccccCceeEece
Q 018414          220 TQSCMDPNVMEAKVVVSSCGHDGP--FGA--TGVKRLKSIGM--IEEVPGMKALDMNSAEDAI-VRLTREVVPGMIVTGM  292 (356)
Q Consensus       220 ~~~~g~~~~i~Ak~VI~AtGg~~~--~~~--~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~-~~~~~e~~~g~~~~~~  292 (356)
                            ..+++||.||+|||+.+.  .+.  .++..+...|+  .+..|++.++.+.. .+.+ ..+     .|..+. .
T Consensus       152 ------~g~i~ad~VVlAtG~~s~p~~g~~G~g~~la~~~G~~i~~~~p~l~~~~~~~-~~~~~~~l-----~g~~~~-~  218 (401)
T 2gqf_A          152 ------STQWQCKNLIVATGGLSMPGLGATPFGYQIAEQFGIPVIPPRASLVPFTYRE-TDKFLTAL-----SGISLP-V  218 (401)
T ss_dssp             ------TEEEEESEEEECCCCSSCGGGTCCSHHHHHHHHTTCCEEEEEEESCCEECCG-GGGGGGGG-----TTCEEE-E
T ss_pred             ------CCEEECCEEEECCCCccCCCCCCChHHHHHHHHCCCCcccCcceeeceecCC-chhhcccC-----CCeeee-e
Confidence                  137999999999998872  122  56777888887  45567776644221 2222 223     555553 2


Q ss_pred             EEEEecCCcccCCccceeee-----ehHHHHHHHH
Q 018414          293 EVAEIDGAPRMGPTFGAMMI-----SGQKAAHLAL  322 (356)
Q Consensus       293 ~~~~~~g~~~~~~~~g~~l~-----sG~~~~~l~l  322 (356)
                      .+.++ |.. .  ..|++++     ||+.++++.-
T Consensus       219 ~~~i~-G~~-~--~~g~~l~t~~g~sG~~~l~~s~  249 (401)
T 2gqf_A          219 TITAL-CGK-S--FYNQLLFTHRGISGPAVLQISN  249 (401)
T ss_dssp             EEEET-TSC-E--EEEEEEECSSEEESHHHHHHTT
T ss_pred             EEEEc-CCc-e--EEeCEEEECCCccHHHHHHHHH
Confidence            33332 321 1  2377774     9999888754

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=99.61  E-value=6.8e-15  Score=140.45  Aligned_cols=132  Identities=21%  Similarity=0.294  Sum_probs=95.2

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccc----------
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDE----------  159 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~----------  159 (356)
                      +|||+||||||+|+++|+.|+++ |++|+|+||.+.+|.....++.+...         .++++++....          
T Consensus         4 ~yDViIVGaGpaGl~~A~~La~~-G~~V~v~Er~~~~~~~~~~g~~l~~~---------~l~~l~~~~~~~~~~~~~~~~   73 (397)
T 3oz2_A            4 TYDVLVVGGGPGGSTAARYAAKY-GLKTLMIEKRPEIGSPVRCGEGLSKG---------ILNEADIKADRSFIANEVKGA   73 (397)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSTTCSCCSCCEEETH---------HHHHTTCCCCTTTEEEEESEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC-CCcEEEEeCCCCCCCCCceecccCHH---------HHHHcCCCchhhhhhcccceE
Confidence            59999999999999999999999 99999999988776543333333221         22333321110          


Q ss_pred             ------------------cCCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCC
Q 018414          160 ------------------QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQ  221 (356)
Q Consensus       160 ------------------~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~  221 (356)
                                        ...+.+..+...+...|.+.+. +.|++++++++++++..+++++.++....          
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~a~-~~G~~~~~~~~v~~~~~~~~~~~~v~~~~----------  142 (397)
T 3oz2_A           74 RIYGPSEKRPIILQSEKAGNEVGYVLERDKFDKHLAALAA-KAGADVWVKSPALGVIKENGKVAGAKIRH----------  142 (397)
T ss_dssp             EEECTTCSSCEEEECSSSSCCCEEEECHHHHHHHHHHHHH-HHTCEEESSCCEEEEEEETTEEEEEEEEE----------
T ss_pred             EEEeCCCceEeeccccccCCceeEEEEHHHHHHHHHHHHH-hcCcEEeeeeeeeeeeeccceeeeeeecc----------
Confidence                              0111234456778888888876 57999999999999999999888776532          


Q ss_pred             CCCCCeEEEcCEEEEcCCCCCC
Q 018414          222 SCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       222 ~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                       +++..+++||.||.|+|..+.
T Consensus       143 -~~~~~~~~a~~vIgAdG~~S~  163 (397)
T 3oz2_A          143 -NNEIVDVRAKMVIAADGFESE  163 (397)
T ss_dssp             -TTEEEEEEEEEEEECCCTTCH
T ss_pred             -cccceEEEEeEEEeCCccccH
Confidence             123467999999999998764

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=99.60  E-value=8.2e-15  Score=131.33  Aligned_cols=197  Identities=23%  Similarity=0.275  Sum_probs=118.4

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~  169 (356)
                      +|||+|||||++|+.+|+.|++. |.+|+|||+.....| .+....+. . .....   .+.++.   + .. .+   ..
T Consensus         3 ~~dVvVVGgG~aGl~aA~~la~~-g~~v~lie~~~~~~G-~~~~~~~~-~-~~~~~---~~~~~~---d-~~-g~---~~   67 (232)
T 2cul_A            3 AYQVLIVGAGFSGAETAFWLAQK-GVRVGLLTQSLDAVM-MPFLPPKP-P-FPPGS---LLERAY---D-PK-DE---RV   67 (232)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHT-TCCEEEEESCGGGTT-CCSSCCCS-C-CCTTC---HHHHHC---C-TT-CC---CH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC-CCCEEEEecCCCcCC-cccCcccc-c-cchhh---HHhhhc---c-CC-CC---CH
Confidence            58999999999999999999999 999999999842222 22111100 0 00001   112221   0 00 01   34


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCCCC-c-
Q 018414          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGA-T-  247 (356)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~~~-~-  247 (356)
                      ..+.+.|.+.+.+..|++++ +++|+++..+++++.++.+.+              ..+++||.||+|+|.++..-. . 
T Consensus        68 ~~~~~~l~~~~~~~~gv~i~-~~~v~~i~~~~~~v~~v~~~~--------------g~~i~a~~VV~A~G~~s~~~~~~G  132 (232)
T 2cul_A           68 WAFHARAKYLLEGLRPLHLF-QATATGLLLEGNRVVGVRTWE--------------GPPARGEKVVLAVGSFLGARLFLG  132 (232)
T ss_dssp             HHHHHHHHHHHHTCTTEEEE-ECCEEEEEEETTEEEEEEETT--------------SCCEECSEEEECCTTCSSCEEEET
T ss_pred             HHHHHHHHHHHHcCCCcEEE-EeEEEEEEEeCCEEEEEEECC--------------CCEEECCEEEECCCCChhhceecC
Confidence            56777777777643599998 469999998888887777642              247999999999998653110 0 


Q ss_pred             ----------------cchhhhccCc-cc----------cccc----ccccccccccceeeeccccccCceeEeceEEEE
Q 018414          248 ----------------GVKRLKSIGM-IE----------EVPG----MKALDMNSAEDAIVRLTREVVPGMIVTGMEVAE  296 (356)
Q Consensus       248 ----------------~~~~~~~~g~-~~----------~~~~----~~~~~~~~~~~~~~~~~~e~~~g~~~~~~~~~~  296 (356)
                                      -...+...++ ..          ..|.    ...++....+...+..  ...||+|..|+.+  
T Consensus       133 ~~~~~~g~~g~~~~~~l~~~l~~~g~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~--t~~p~iya~G~~a--  208 (232)
T 2cul_A          133 GVVEEAGRLSEASYPDLLEDLSRLGFRFVEREGEVPETPSTPGYRVRYLAFHPEEWEEKTFRL--KRLEGLYAVGLCV--  208 (232)
T ss_dssp             TEEESEEETTEECCSHHHHHHHHTTCCEEEEEEEEC-----CCEEEEEEEECGGGEETTTTEE--TTSBSEEECGGGT--
T ss_pred             CccCCCCCCcccchhhhCHHHHhCCCeEEccccccCcCCCCCCccCchhhcccCCCCCccccc--cccccceeeeecc--
Confidence                            0111122222 00          0000    0122222222222222  2469999999866  


Q ss_pred             ecCCcccCCccceeeeehHHHHHHHHHHhC
Q 018414          297 IDGAPRMGPTFGAMMISGQKAAHLALKSLG  326 (356)
Q Consensus       297 ~~g~~~~~~~~g~~l~sG~~~~~l~l~~~~  326 (356)
                      ..+      .++.++.+|..+++.++++|+
T Consensus       209 ~~g------~~~~~~~~g~~~a~~i~~~l~  232 (232)
T 2cul_A          209 REG------DYARMSEEGKRLAEHLLHELG  232 (232)
T ss_dssp             SCC------CHHHHHHHHHHHHHHHHHHC-
T ss_pred             cCc------cHHHHHHHHHHHHHHHHhhcC
Confidence            322      678888999999999998874

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=99.59  E-value=1.3e-14  Score=144.87  Aligned_cols=141  Identities=22%  Similarity=0.353  Sum_probs=100.5

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcccc-CCccc---------------------hhh------
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWL-GGQLF---------------------SAM------  140 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~-~g~~~---------------------~~~------  140 (356)
                      .+|||||||+|++|+++|+.|+++ |++|+||||...+||.+.. +|.+.                     ..+      
T Consensus        40 ~~~DVvVVGaG~AGl~AA~~aa~~-G~~V~vlEk~~~~GG~s~~s~G~~~~~~~~~~~~~~g~~ds~~~~~~~~~~~~~~  118 (510)
T 4at0_A           40 YEADVVVAGYGIAGVAASIEAARA-GADVLVLERTSGWGGATALAGGFIYLGGGTPLQKACGFDDSPENMKTFMMAALGP  118 (510)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSCTTGGGSCCCEECCSSCHHHHHTTCCCCHHHHHHHHHHHSCS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCCCCCCcchhcCcceecCCCCHHHHHhCCCCCHHHHHHHHHHHhCC
Confidence            369999999999999999999999 9999999999888765532 22110                     000      


Q ss_pred             ---------hc-c-chHHHHHHHhCCCcccc-----------CC-eEE-------------------E-e----------
Q 018414          141 ---------VV-R-KPAHIFLDELGIDYDEQ-----------DN-YVV-------------------I-K----------  167 (356)
Q Consensus       141 ---------~~-~-~~~~~~l~~~G~~~~~~-----------~~-~~~-------------------~-~----------  167 (356)
                               +. . ...++|+.++|++|...           .. ...                   . .          
T Consensus       119 ~~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~r~~~~~~~~~~~g~~  198 (510)
T 4at0_A          119 GADEEKITDYCEGSVEHYNWLVDCGVPFKESFWGEPGWEPPFDDGLMYSGGENAAPFNEIAAPAPRGHVPQMDGKRTGEK  198 (510)
T ss_dssp             SCCHHHHHHHHHTHHHHHHHHHHTTCCCCSCEECSSSSSCSSSCSEECCSSTTSTTGGGTSCCCCCEECCCCSSCBTTTB
T ss_pred             CCCHHHHHHHHHhhHHHHHHHHHcCCeecccccCCcccccCCcccccccCcccccccccccCcccceeeecccccccccC
Confidence                     00 0 12357888888877543           00 000                   0 0          


Q ss_pred             ch-HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEe-CCeEEEEEEcceeeecccCCCCCCCCeEEEc-CEEEEcCCCCC
Q 018414          168 HA-ALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEA-KVVVSSCGHDG  242 (356)
Q Consensus       168 ~~-~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A-k~VI~AtGg~~  242 (356)
                      .. ..+...|.+.+. +.|++|+++++|++|+.+ +++|.||.+..           .++..+|+| |.||+|||+++
T Consensus       199 ~g~~~l~~~L~~~~~-~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~-----------~g~~~~i~A~k~VVlAtGG~~  264 (510)
T 4at0_A          199 GGGYMLMKPLVETAE-KLGVRAEYDMRVQTLVTDDTGRVVGIVAKQ-----------YGKEVAVRARRGVVLATGSFA  264 (510)
T ss_dssp             CTTHHHHHHHHHHHH-HTTCEEECSEEEEEEEECTTCCEEEEEEEE-----------TTEEEEEEEEEEEEECCCCCT
T ss_pred             CCHHHHHHHHHHHHH-HcCCEEEecCEeEEEEECCCCcEEEEEEEE-----------CCcEEEEEeCCeEEEeCCChh
Confidence            11 267788888887 469999999999999998 78999998752           112357999 59999999987

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=99.57  E-value=1.8e-14  Score=145.70  Aligned_cols=144  Identities=22%  Similarity=0.283  Sum_probs=102.9

Q ss_pred             CCcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcccc-CCccch----------------h----h------
Q 018414           88 YADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWL-GGQLFS----------------A----M------  140 (356)
Q Consensus        88 ~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~-~g~~~~----------------~----~------  140 (356)
                      ..++||||||+|++|+++|+.|+++ |++|+||||...+|+.+.. ++.+..                .    +      
T Consensus       119 ~~~~DVvVVG~G~aGl~aA~~la~~-G~~V~vlEk~~~~gg~s~~s~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~~~~  197 (566)
T 1qo8_A          119 SETTQVLVVGAGSAGFNASLAAKKA-GANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQ  197 (566)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHH-TCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTT
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCCCCCCcccccCceeEccCCHHHHHhCCCCCHHHHHHHHHHhcCC
Confidence            3469999999999999999999999 9999999999887765432 221100                0    0      


Q ss_pred             -----hc------cchHHHHHHHhCCCcccc---C--CeEEE-------echHHHHHHHHHHHHcCCCcEEEcCeEEEEE
Q 018414          141 -----VV------RKPAHIFLDELGIDYDEQ---D--NYVVI-------KHAALFTSTIMSKLLARPNVKLFNAVAAEDL  197 (356)
Q Consensus       141 -----~~------~~~~~~~l~~~G~~~~~~---~--~~~~~-------~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i  197 (356)
                           +.      ....++|+.++|++|...   .  .++..       .....+...|.+.+. +.|++++++++|++|
T Consensus       198 ~~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~~~~~~~~l~~~L~~~~~-~~gv~i~~~~~v~~l  276 (566)
T 1qo8_A          198 QNDIKLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAK-EQGIDTRLNSRVVKL  276 (566)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHH-HTTCCEECSEEEEEE
T ss_pred             CCCHHHHHHHHhccHHHHHHHHhcCCccccccccCCCCCCceeecCCCCCCHHHHHHHHHHHHH-hcCCEEEeCCEEEEE
Confidence                 00      012357888889887531   1  11111       125667788888876 569999999999999


Q ss_pred             EEeC-CeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          198 IVKG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       198 ~~~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      +.++ ++|.+|.+.+       .   +++..+++||.||+|||+++.
T Consensus       277 ~~~~~g~v~Gv~~~~-------~---~g~~~~i~A~~VVlAtGg~s~  313 (566)
T 1qo8_A          277 VVNDDHSVVGAVVHG-------K---HTGYYMIGAKSVVLATGGYGM  313 (566)
T ss_dssp             EECTTSBEEEEEEEE-------T---TTEEEEEEEEEEEECCCCCTT
T ss_pred             EECCCCcEEEEEEEe-------C---CCcEEEEEcCEEEEecCCccc
Confidence            9988 8999887742       0   112347999999999999885

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=99.57  E-value=3.7e-14  Score=143.49  Aligned_cols=144  Identities=21%  Similarity=0.281  Sum_probs=102.3

Q ss_pred             CCcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccc-cCCccch----------------hhh---------
Q 018414           88 YADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW-LGGQLFS----------------AMV---------  141 (356)
Q Consensus        88 ~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~-~~g~~~~----------------~~~---------  141 (356)
                      ..++||||||||++|+++|+.|+++ |++|+||||...+|+.+. .++.+..                .++         
T Consensus       124 ~~~~DVvVVGaG~aGl~aA~~la~~-G~~V~vlEk~~~~gg~s~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~  202 (571)
T 1y0p_A          124 HDTVDVVVVGSGGAGFSAAISATDS-GAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQN  202 (571)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTT
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCCCCCCchhhcCceEEeCCCHHHHHhCCCCCHHHHHHHHHHhcCC
Confidence            3469999999999999999999999 999999999988776542 2221100                000         


Q ss_pred             -cc-----------chHHHHHHHhCCCcccc---C--CeEE--E-----echHHHHHHHHHHHHcCCCcEEEcCeEEEEE
Q 018414          142 -VR-----------KPAHIFLDELGIDYDEQ---D--NYVV--I-----KHAALFTSTIMSKLLARPNVKLFNAVAAEDL  197 (356)
Q Consensus       142 -~~-----------~~~~~~l~~~G~~~~~~---~--~~~~--~-----~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i  197 (356)
                       ..           ...++|+.++|++|...   .  .++.  .     .....+...|.+.+. +.|++|+++++|++|
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~g~~~g~~l~~~L~~~~~-~~gv~i~~~~~v~~l  281 (571)
T 1y0p_A          203 INDPALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAV-KRNIDLRMNTRGIEV  281 (571)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHH-HTTCEEESSEEEEEE
T ss_pred             CCCHHHHHHHHHccHHHHHHHHhcCCCCccCcccCCcCCCeeEecCCCCCCHHHHHHHHHHHHH-hcCCEEEeCCEeeEe
Confidence             00           12357888889888531   1  1111  1     124677788888876 569999999999999


Q ss_pred             EEeC-CeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          198 IVKG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       198 ~~~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      +.++ ++|.||.+.+      .    +++..+++||.||+|||+++.
T Consensus       282 ~~~~~g~v~Gv~~~~------~----~g~~~~i~a~~VVlAtGg~~~  318 (571)
T 1y0p_A          282 LKDDKGTVKGILVKG------M----YKGYYWVKADAVILATGGFAK  318 (571)
T ss_dssp             EECTTSCEEEEEEEE------T----TTEEEEEECSEEEECCCCCTT
T ss_pred             EEcCCCeEEEEEEEe------C----CCcEEEEECCeEEEeCCCccc
Confidence            9887 8898887742      0    112347999999999999874

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=99.54  E-value=4.3e-14  Score=144.02  Aligned_cols=145  Identities=23%  Similarity=0.279  Sum_probs=102.3

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc-ccCCccc-----------hhh----------hcc---
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA-WLGGQLF-----------SAM----------VVR---  143 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~-~~~g~~~-----------~~~----------~~~---  143 (356)
                      .++||||||+|++|++||+.|+++ |.+|+||||....++.+ +.+|.+.           ...          ...   
T Consensus        17 ~~~DVvVVG~G~AGl~AAl~aa~~-G~~V~vlEK~~~~~g~s~~a~GGi~a~~~~~~~ds~~~~~~dtl~~g~~l~d~~~   95 (621)
T 2h88_A           17 HEFDAVVVGAGGAGLRAAFGLSEA-GFNTACVTKLFPTRSHTVAAQGGINAALGNMEDDNWRWHFYDTVKGSDWLGDQDA   95 (621)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSCGGGSGGGGCCSCEECCCCSSSCCCHHHHHHHHHHHTTTCSCHHH
T ss_pred             ccCCEEEECccHHHHHHHHHHHHC-CCcEEEEeccCCCCCCchhhCCCcEecCCCCCCCCHHHHHHHHHHhcCCCCCHHH
Confidence            358999999999999999999999 99999999986544332 2222110           000          000   


Q ss_pred             --------chHHHHHHHhCCCccccCC--eEE------------------Ee-----chHHHHHHHHHHHHcCCCcEEEc
Q 018414          144 --------KPAHIFLDELGIDYDEQDN--YVV------------------IK-----HAALFTSTIMSKLLARPNVKLFN  190 (356)
Q Consensus       144 --------~~~~~~l~~~G~~~~~~~~--~~~------------------~~-----~~~~~~~~l~~~~~~~~gv~i~~  190 (356)
                              ...++||.++|++|.....  +..                  ..     ....+...|++.+. +.|++|++
T Consensus        96 v~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~g~~~~~~R~~~~~d~tG~~l~~~L~~~~~-~~gv~i~~  174 (621)
T 2h88_A           96 IHYMTEQAPAAVIELENYGMPFSRTEEGKIYQRAFGGQSLQFGKGGQAHRCCCVADRTGHSLLHTLYGRSL-RYDTSYFV  174 (621)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCCBCTTSSBCEECCTTCBSTTTTSCBCCCEECSTTCHHHHHHHHHHHHHT-TSCCEEEE
T ss_pred             HHHHHHHHHHHHHHHHHcCCCcccCCCCceeccccCcccccccCCCcceeEEEecCCCHHHHHHHHHHHHH-hCCCEEEE
Confidence                    1235788889998865321  110                  00     13467788888876 67999999


Q ss_pred             CeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414          191 AVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF  244 (356)
Q Consensus       191 ~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~  244 (356)
                      ++.|++|+.++++|.||.+.+      ..   +++...++|+.||+|||+++..
T Consensus       175 ~~~v~~Li~~~g~v~Gv~~~~------~~---~G~~~~i~A~~VVlATGG~~~~  219 (621)
T 2h88_A          175 EYFALDLLMENGECRGVIALC------IE---DGTIHRFRAKNTVIATGGYGRT  219 (621)
T ss_dssp             TEEEEEEEEETTEEEEEEEEE------TT---TCCEEEEEEEEEEECCCCCGGG
T ss_pred             ceEEEEEEEECCEEEEEEEEE------cC---CCcEEEEEcCeEEECCCccccc
Confidence            999999999889999987742      01   1234579999999999998743

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=99.53  E-value=8.5e-14  Score=142.79  Aligned_cols=145  Identities=18%  Similarity=0.150  Sum_probs=100.9

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc-ccCCcc--------------c----hhhh------cc
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA-WLGGQL--------------F----SAMV------VR  143 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~-~~~g~~--------------~----~~~~------~~  143 (356)
                      .++||||||||++|+++|+.|++. |.+|+||||....++.+ +..|.+              +    ...+      ..
T Consensus         4 ~~~DVvVIGgG~AGL~AAl~aae~-G~~V~vlEK~~~~~g~s~~a~GGi~a~~~~~~~g~~ds~~~~~~dt~~~g~~~~d   82 (660)
T 2bs2_A            4 QYCDSLVIGGGLAGLRAAVATQQK-GLSTIVLSLIPVKRSHSAAAQGGMQASLGNSKMSDGDNEDLHFMDTVKGSDWGCD   82 (660)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHTT-TCCEEEECSSCGGGSGGGGCCSCEECCCCCSGGGTTCCHHHHHHHHHHHTTTCSC
T ss_pred             ccccEEEECchHHHHHHHHHHHHC-CCcEEEEeccCCCCCcccccCCCeEeccCCcccCCCCCHHHHHHHHHHhcCCCCC
Confidence            358999999999999999999999 99999999986543322 221110              0    0000      00


Q ss_pred             -----------chHHHHHHHhCCCccccCC-----------------------eE----------EE-----echHHHHH
Q 018414          144 -----------KPAHIFLDELGIDYDEQDN-----------------------YV----------VI-----KHAALFTS  174 (356)
Q Consensus       144 -----------~~~~~~l~~~G~~~~~~~~-----------------------~~----------~~-----~~~~~~~~  174 (356)
                                 ...++||.++|++|.....                       +.          ..     .....+..
T Consensus        83 ~~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~g~~~~~l~~~e~~~~~~~~~~gg~~~~R~~~~~d~tG~~l~~  162 (660)
T 2bs2_A           83 QKVARMFVNTAPKAIRELAAWGVPWTRIHKGDRMAIINAQKTTITEEDFRHGLIHSRDFGGTKKWRTCYTADATGHTMLF  162 (660)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCCBCCSEEEECCCSSCCCEEEECGGGTTSBCCBCCTTCSSCCEECSTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCceecCCCcccccccccccccccchhhhhhhccccccccccceeEeeCCCCHHHHHH
Confidence                       1245788889998865321                       10          00     01346778


Q ss_pred             HHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414          175 TIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF  244 (356)
Q Consensus       175 ~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~  244 (356)
                      .|++.+. +.|++|++++.|++|+.++++|.||.+.+      ..   +++...++||.||+|||+++..
T Consensus       163 ~L~~~a~-~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~------~~---~G~~~~i~A~~VVlATGG~~~~  222 (660)
T 2bs2_A          163 AVANECL-KLGVSIQDRKEAIALIHQDGKCYGAVVRD------LV---TGDIIAYVAKGTLIATGGYGRI  222 (660)
T ss_dssp             HHHHHHH-HHTCEEECSEEEEEEEEETTEEEEEEEEE------TT---TCCEEEEECSEEEECCCCCGGG
T ss_pred             HHHHHHH-hCCCEEEECcEEEEEEecCCEEEEEEEEE------CC---CCcEEEEEcCEEEEccCcchhh
Confidence            8888876 56999999999999999889999987631      01   1234579999999999998843

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=99.50  E-value=4.6e-14  Score=144.74  Aligned_cols=148  Identities=15%  Similarity=0.275  Sum_probs=104.2

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcC-----CCCeEEEEeccCCCCCccccCC--ccc--------hh--------------
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKN-----PNIQIAIIEQSVSPGGGAWLGG--QLF--------SA--------------  139 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~-----~G~~V~llEk~~~~Gg~~~~~g--~~~--------~~--------------  139 (356)
                      .++||||||+|++||+||+.|++.     ||.+|+||||....+++++..|  .+.        ..              
T Consensus        21 ~~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~~~~~s~s~AqG~~gi~a~l~~ds~e~~~~~~~~~~~gl~d  100 (662)
T 3gyx_A           21 HSVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASLERSGAVAQGLSAINTYLGDNNADDYVRMVRTDLMGLVR  100 (662)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSCTTTCSTTTTCEEEECCCCTTSCHHHHHHHHHHHTTTCCC
T ss_pred             EEcCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEecCCCCCcccccCcchheeecCCCCHHHHHHHHHHhcCCCcc
Confidence            369999999999999999999985     4899999999876555555544  210        00              


Q ss_pred             -----hhcc--chHHHHHHHhCCCcccc-CC--eE-------------------------EEechHHHHHHHHHHHHcC-
Q 018414          140 -----MVVR--KPAHIFLDELGIDYDEQ-DN--YV-------------------------VIKHAALFTSTIMSKLLAR-  183 (356)
Q Consensus       140 -----~~~~--~~~~~~l~~~G~~~~~~-~~--~~-------------------------~~~~~~~~~~~l~~~~~~~-  183 (356)
                           .+..  ...++||.++|++|... ..  +.                         .......+...|.+.+.+. 
T Consensus       101 ~~~v~~l~~~a~~~i~~L~~~Gv~f~~~~~~G~~~~g~~~~~fg~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~a~~~~  180 (662)
T 3gyx_A          101 EDLIYDLGRHVDDSVHLFEEWGLPVWIKDEHGHNLDGAQAKAAGKSLRNGDKPVRSGRWQIMINGESYKVIVAEAAKNAL  180 (662)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCBCEECSSSCEECHHHHHHHTCCTTTTCCBCCSSTTCEEEEETSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCceecCCCCccccchhhhccccccccCccccccceecccCCHHHHHHHHHHHHHhcC
Confidence                 0000  12467889999998653 11  11                         1112345667777777643 


Q ss_pred             CCcEEEcCeEEEEEEEeCC---eEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCCC
Q 018414          184 PNVKLFNAVAAEDLIVKGG---RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFG  245 (356)
Q Consensus       184 ~gv~i~~~~~v~~i~~~~~---~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~~  245 (356)
                      .|+++++++.|++|+.+++   +|.||.+.+      ..   +++...|+|+.||+||||++...
T Consensus       181 ~gV~i~~~~~v~dLi~~~~~~g~v~Gv~~~~------~~---~g~~~~i~Ak~VVLATGG~g~~y  236 (662)
T 3gyx_A          181 GQDRIIERIFIVKLLLDKNTPNRIAGAVGFN------LR---ANEVHIFKANAMVVACGGAVNVY  236 (662)
T ss_dssp             CTTTEECSEEECCCEECSSSTTBEEEEEEEE------SS---SSCEEEEECSEEEECCCCBCSSS
T ss_pred             CCcEEEEceEEEEEEEeCCccceEEEEEEEE------cC---CCcEEEEEeCEEEECCCcccccc
Confidence            2999999999999999877   999997632      11   12346799999999999988543

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=99.50  E-value=1.4e-13  Score=139.75  Aligned_cols=143  Identities=20%  Similarity=0.308  Sum_probs=99.7

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc-ccCCccc-----------h----hh------hcc----
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA-WLGGQLF-----------S----AM------VVR----  143 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~-~~~g~~~-----------~----~~------~~~----  143 (356)
                      ++||||||+|++|+++|+.|+++ |.+|+||||....++.+ +..|.+.           .    ..      ...    
T Consensus         7 ~~DVvVVGaG~AGl~AA~~la~~-G~~V~vlEK~~~~~g~s~~a~GGi~~~~~~~~~ds~~~~~~d~~~~g~~~~d~~~v   85 (588)
T 2wdq_A            7 EFDAVVIGAGGAGMRAALQISQS-GQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAI   85 (588)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSCGGGSGGGGCCSCEECCCCSSSCCCHHHHHHHHHHHTTTCSCHHHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCCCCcchhhCCccEEcCCCCCCCCHHHHHHHHHHhcCCCCCHHHH
Confidence            58999999999999999999999 99999999987654322 2222110           0    00      000    


Q ss_pred             -------chHHHHHHHhCCCccccC--CeEE-----------------Ee-----chHHHHHHHHHHHHcCCCcEEEcCe
Q 018414          144 -------KPAHIFLDELGIDYDEQD--NYVV-----------------IK-----HAALFTSTIMSKLLARPNVKLFNAV  192 (356)
Q Consensus       144 -------~~~~~~l~~~G~~~~~~~--~~~~-----------------~~-----~~~~~~~~l~~~~~~~~gv~i~~~~  192 (356)
                             ...++||.++|++|....  .+..                 ..     ....+...|.+.+. +.|++|++++
T Consensus        86 ~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~~g~~~~~~~~~~~r~~~~~d~~g~~l~~~L~~~~~-~~gv~i~~~~  164 (588)
T 2wdq_A           86 EYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNL-KNHTTIFSEW  164 (588)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCBCTTSSBCEECCTTCBSTTTCSBCCCEECSTTCHHHHHHHHHHHHHH-HTTCEEEETE
T ss_pred             HHHHHhHHHHHHHHHHcCCCcccCCCCcEeeeecCCccccccccCcceEEEcCCCCHHHHHHHHHHHHH-hCCCEEEeCc
Confidence                   123578888999886531  1110                 00     12567788888887 4699999999


Q ss_pred             EEEEEEEe-CCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          193 AAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       193 ~v~~i~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      .|++|+.+ +++|.||.+.+      ..   +++..+++||.||+|||+++.
T Consensus       165 ~v~~L~~~~~g~v~Gv~~~~------~~---~g~~~~i~A~~VVlAtGg~~~  207 (588)
T 2wdq_A          165 YALDLVKNQDGAVVGCTALC------IE---TGEVVYFKARATVLATGGAGR  207 (588)
T ss_dssp             EEEEEEECTTSCEEEEEEEE------TT---TCCEEEEEEEEEEECCCCCGG
T ss_pred             EEEEEEECCCCEEEEEEEEE------cC---CCeEEEEEcCEEEECCCCCcc
Confidence            99999986 78898887631      01   123457999999999999874

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=99.49  E-value=3.5e-13  Score=136.34  Aligned_cols=143  Identities=20%  Similarity=0.309  Sum_probs=101.0

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccc-cCCccc----------------hh----h-------
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW-LGGQLF----------------SA----M-------  140 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~-~~g~~~----------------~~----~-------  140 (356)
                      .++||+|||+|++|+++|+.|++. |.+|+|+||...+|+... .++.+.                ..    +       
T Consensus       125 ~~~~v~viG~G~aG~~aa~~~~~~-g~~v~~~e~~~~~~~~~~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~  203 (572)
T 1d4d_A          125 ETTDVVIIGSGGAGLAAAVSARDA-GAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNI  203 (572)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHSS-SCCEEEECSSSSSCTTGGGCCSCEECCSSSTTGGGTCCCCTHHHHHHHHHHTTTC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCCCcchhhhCCeeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCC
Confidence            368999999999999999999999 999999999988776542 222110                00    0       


Q ss_pred             --------hc-c-chHHHHHHHhCCCcccc---C--CeEEE-------echHHHHHHHHHHHHcCCCcEEEcCeEEEEEE
Q 018414          141 --------VV-R-KPAHIFLDELGIDYDEQ---D--NYVVI-------KHAALFTSTIMSKLLARPNVKLFNAVAAEDLI  198 (356)
Q Consensus       141 --------~~-~-~~~~~~l~~~G~~~~~~---~--~~~~~-------~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~  198 (356)
                              +. . ...++||.++|++|...   .  .++..       .....+...|.+.+. +.|++++++++|++|+
T Consensus       204 ~~~~~v~~~~~~~~~~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~~~~~g~~l~~~L~~~~~-~~gv~i~~~t~v~~l~  282 (572)
T 1d4d_A          204 NDPELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAV-KRGTDIRLNSRVVRIL  282 (572)
T ss_dssp             SCHHHHHHHHHTHHHHHHHHHHHTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHH-HTTCEEESSEEEEEEE
T ss_pred             CCHHHHHHHHHccHHHHHHHHhcCCccccccccCCCcCCeeEecCCCCCCHHHHHHHHHHHHH-HcCCeEEecCEEEEEE
Confidence                    00 0 12457888889887531   1  11111       124567788888876 5699999999999999


Q ss_pred             EeC-CeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          199 VKG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       199 ~~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      .++ ++|.||.+.+       .   +++..+++||.||+|||+++.
T Consensus       283 ~~~~g~v~GV~~~~-------~---~G~~~~i~A~~VVlAtGg~~~  318 (572)
T 1d4d_A          283 EDASGKVTGVLVKG-------E---YTGYYVIKADAVVIAAGGFAK  318 (572)
T ss_dssp             EC--CCEEEEEEEE-------T---TTEEEEEECSEEEECCCCCTT
T ss_pred             ECCCCeEEEEEEEe-------C---CCcEEEEEcCEEEEeCCCCcc
Confidence            887 8898887742       0   112357999999999999874

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=99.49  E-value=1.2e-13  Score=138.85  Aligned_cols=146  Identities=25%  Similarity=0.374  Sum_probs=90.9

Q ss_pred             CCcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc-ccCCccch-------------hhh------c-----
Q 018414           88 YADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA-WLGGQLFS-------------AMV------V-----  142 (356)
Q Consensus        88 ~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~-~~~g~~~~-------------~~~------~-----  142 (356)
                      ..++||||||+|++|+++|+.|++  |.+|+||||....++.+ +.+|.+..             ..+      .     
T Consensus         6 ~~~~DVvVVG~G~AGl~aAl~la~--G~~V~vlEk~~~~~g~s~~a~Ggi~~~~~~~ds~~~~~~d~l~~g~g~~d~~~v   83 (540)
T 1chu_A            6 EHSCDVLIIGSGAAGLSLALRLAD--QHQVIVLSKGPVTEGSTFYAQGGIAAVFDETDSIDSHVEDTLIAGAGICDRHAV   83 (540)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHTT--TSCEEEECSSCTTC-------------CCSHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred             CCCCCEEEECccHHHHHHHHHHhc--CCcEEEEECCCCCCCChhhcCCCEEEecCCCCCHHHHHHHHHHhhcccCCHHHH
Confidence            346899999999999999999987  89999999997665433 33332210             000      0     


Q ss_pred             ------cchHHHHHHHhCCCccccC------CeEE----------Ee-----chHHHHHHHHHHHHcCCCcEEEcCeEEE
Q 018414          143 ------RKPAHIFLDELGIDYDEQD------NYVV----------IK-----HAALFTSTIMSKLLARPNVKLFNAVAAE  195 (356)
Q Consensus       143 ------~~~~~~~l~~~G~~~~~~~------~~~~----------~~-----~~~~~~~~l~~~~~~~~gv~i~~~~~v~  195 (356)
                            ....++||.++|++|....      .+..          ..     ....+...|++.+.+..|+++++++.|+
T Consensus        84 ~~~~~~~~~~i~~l~~~Gv~f~~~~~~~~~g~~~~~~~gg~~~~r~~~~~d~~g~~l~~~L~~~~~~~~gv~i~~~~~v~  163 (540)
T 1chu_A           84 EFVASNARSCVQWLIDQGVLFDTHIQPNGEESYHLTREGGHSHRRILHAADATGREVETTLVSKALNHPNIRVLERTNAV  163 (540)
T ss_dssp             HHHHHHHHHHHHHHHHTTCC--------------------------------------CCCHHHHHHCTTEEEECSEEEE
T ss_pred             HHHHHhHHHHHHHHHHcCCCcccCcccCcCCccccccccccccCeEEEeCCCCHHHHHHHHHHHHHcCCCCEEEeCcEEE
Confidence                  0124678889999886532      1110          00     1234555667777654799999999999


Q ss_pred             EEEE-eCC------eEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414          196 DLIV-KGG------RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF  244 (356)
Q Consensus       196 ~i~~-~~~------~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~  244 (356)
                      +|+. +++      +|.||.+.+      ..   +++..+++||.||+|||+++..
T Consensus       164 ~L~~~~~g~~~~~~~v~Gv~~~~------~~---~G~~~~i~A~~VVlAtGg~~~~  210 (540)
T 1chu_A          164 DLIVSDKIGLPGTRRVVGAWVWN------RN---KETVETCHAKAVVLATGGASKV  210 (540)
T ss_dssp             EEEEGGGTTCCSSCBEEEEEEEE------TT---TTEEEEEECSEEEECCCCCGGG
T ss_pred             EEEEcCCCCcccCCEEEEEEEEE------cC---CCcEEEEEcCeEEECCCCcccc
Confidence            9998 546      888887742      01   1123579999999999998843

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=99.49  E-value=1.7e-13  Score=140.45  Aligned_cols=145  Identities=20%  Similarity=0.335  Sum_probs=97.9

Q ss_pred             CcccEEEECCCHHHHHHHHHhh---c-CCCCeEEEEeccCCCCCccccCCcc-----c------------hhh----h--
Q 018414           89 ADTDVVVVGAGSAGLSCAYELS---K-NPNIQIAIIEQSVSPGGGAWLGGQL-----F------------SAM----V--  141 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La---~-~~G~~V~llEk~~~~Gg~~~~~g~~-----~------------~~~----~--  141 (356)
                      .++||||||||++||+||+.|+   + + |.+|+||||....+++.+.+|..     +            ..+    .  
T Consensus        21 ~~~DVvVIG~G~AGl~AAl~aa~~~~~~-G~~V~vlEK~~~~~s~~~a~G~~~~~~~~~~~~~~g~~ds~~~~~~~~~~~   99 (643)
T 1jnr_A           21 VETDILIIGGGFSGCGAAYEAAYWAKLG-GLKVTLVEKAAVERSGAVAQGLSAINTYIDLTGRSERQNTLEDYVRYVTLD   99 (643)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHTTT-TCCEEEECSSCTTTCSTTTTCEEEESCCCCSSSSBSCCCCHHHHHHHHHHH
T ss_pred             ccCCEEEECcCHHHHHHHHHHhhhhhhC-CCeEEEEeCcCCCCCcceecccccccchhhHHHhcCCCCCHHHHHHHHHHH
Confidence            3689999999999999999999   6 8 99999999987543333322210     0            000    0  


Q ss_pred             ----cc-----------chHHHHHHHhCCCccccCC--eE------EEechHHHHHHHHHHHHcCC-Cc-EEEcCeEEEE
Q 018414          142 ----VR-----------KPAHIFLDELGIDYDEQDN--YV------VIKHAALFTSTIMSKLLARP-NV-KLFNAVAAED  196 (356)
Q Consensus       142 ----~~-----------~~~~~~l~~~G~~~~~~~~--~~------~~~~~~~~~~~l~~~~~~~~-gv-~i~~~~~v~~  196 (356)
                          ..           ...++||.++|++|.....  +.      .......+...|.+.+. +. |+ ++++++.|++
T Consensus       100 g~~l~d~~~v~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~-~~~gv~~i~~~~~v~~  178 (643)
T 1jnr_A          100 MMGLAREDLVADYARHVDGTVHLFEKWGLPIWKTPDGKYVREGQWQIMIHGESYKPIIAEAAK-MAVGEENIYERVFIFE  178 (643)
T ss_dssp             TTTCCCHHHHHHHHHHHHHHHHHHHHTTCCBCBCTTSCBCBSSSSCEEEEETTHHHHHHHHHH-HHHCGGGEECSEEEEE
T ss_pred             hcCcCcHHHHHHHHHHHHHHHHHHHHcCCcceeCCCCCccCCCccccCCCcHHHHHHHHHHHH-hcCCCcEEEecCEEEE
Confidence                00           1235788889999864321  11      11122345556666665 44 89 9999999999


Q ss_pred             EEEeCC---eEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414          197 LIVKGG---RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF  244 (356)
Q Consensus       197 i~~~~~---~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~  244 (356)
                      |+.+++   +|.||.+.+      ..   +++...++||.||+|||+++..
T Consensus       179 L~~~~~~~g~v~Gv~~~~------~~---~g~~~~i~A~~VVlAtGG~~~~  220 (643)
T 1jnr_A          179 LLKDNNDPNAVAGAVGFS------VR---EPKFYVFKAKAVILATGGATLL  220 (643)
T ss_dssp             EEECTTCTTBEEEEEEEE------SS---SSCEEEEECSEEEECCCCBCSS
T ss_pred             EEEcCCccceeEEEEEEE------ec---CCcEEEEEcCEEEECCCccccc
Confidence            999877   999987631      11   1233579999999999998854

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=99.48  E-value=9.8e-14  Score=139.21  Aligned_cols=137  Identities=17%  Similarity=0.232  Sum_probs=96.4

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCC---------------------------ccccCCccchhhhc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG---------------------------GAWLGGQLFSAMVV  142 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg---------------------------~~~~~g~~~~~~~~  142 (356)
                      ++||+|||||++|+++|+.|++. |++|+|||++..+++                           +.|..+.+......
T Consensus       107 ~~DVVIVGgGpaGL~aA~~La~~-G~kV~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl~~~i~~  185 (549)
T 3nlc_A          107 TERPIVIGFGPCGLFAGLVLAQM-GFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKD  185 (549)
T ss_dssp             CCCCEEECCSHHHHHHHHHHHHT-TCCCEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGTTSCCCCCCCSCC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC-CCeEEEEEccCcccccccchhcccccccccccccceeccCCcccccCCceEEEecc
Confidence            58999999999999999999999 999999999864411                           11211212111111


Q ss_pred             ----cchHHHHHHHhCCCccccCC-eEE--EechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeee
Q 018414          143 ----RKPAHIFLDELGIDYDEQDN-YVV--IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVS  215 (356)
Q Consensus       143 ----~~~~~~~l~~~G~~~~~~~~-~~~--~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~  215 (356)
                          .....+++.++|.+...... .+.  ......+...|.+.+. +.|++++++++|+++..+++++.+|.+.+    
T Consensus       186 ~~~~~~~v~~~~~~~G~~~~i~~~~~p~~G~~~~~~l~~~L~~~l~-~~Gv~I~~~t~V~~I~~~~~~v~gV~l~~----  260 (549)
T 3nlc_A          186 PNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATII-ELGGEIRFSTRVDDLHMEDGQITGVTLSN----  260 (549)
T ss_dssp             TTCHHHHHHHHHHHTTCCGGGGTBSSCCCCHHHHHHHHHHHHHHHH-HTTCEEESSCCEEEEEESSSBEEEEEETT----
T ss_pred             ccccHHHHHHHHHHcCCCceEeeccccccccchHHHHHHHHHHHHH-hcCCEEEeCCEEEEEEEeCCEEEEEEECC----
Confidence                12345667778876443211 111  1233566777777776 46999999999999999888888888753    


Q ss_pred             cccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          216 MNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       216 ~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                                ..+++|+.||+|+|+.+
T Consensus       261 ----------G~~i~Ad~VVlA~G~~s  277 (549)
T 3nlc_A          261 ----------GEEIKSRHVVLAVGHSA  277 (549)
T ss_dssp             ----------SCEEECSCEEECCCTTC
T ss_pred             ----------CCEEECCEEEECCCCCh
Confidence                      35799999999999876

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=99.47  E-value=2.7e-13  Score=137.85  Aligned_cols=144  Identities=21%  Similarity=0.238  Sum_probs=99.5

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCC--CeEEEEeccCCCCCc-cccCCccc---------h----hh------hcc----
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPN--IQIAIIEQSVSPGGG-AWLGGQLF---------S----AM------VVR----  143 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G--~~V~llEk~~~~Gg~-~~~~g~~~---------~----~~------~~~----  143 (356)
                      ++||||||||++|+++|+.|++. |  .+|+||||....++. .+..|.+.         .    ..      ...    
T Consensus         5 ~~DVvIVG~G~AGl~aAl~la~~-G~~~~V~vlEk~~~~~~~s~~a~GGi~~~~~~~ds~~~~~~d~~~~g~~~~d~~~v   83 (602)
T 1kf6_A            5 QADLAIVGAGGAGLRAAIAAAQA-NPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDVV   83 (602)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHH-CTTCCEEEEESSCGGGSGGGGCCSCEECCCSTTCCHHHHHHHHHHHTTTCSCHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhc-CCCCcEEEEeCCCCCCChHHHhcCccEEeCCCCCCHHHHHHHHHHhcCCCCCHHHH
Confidence            58999999999999999999998 8  999999998654332 22222111         0    00      000    


Q ss_pred             -------chHHHHHHHhCCCccccCC--eE----------EEec-----hHHHHHHHHHHHHcCCC-cEEEcCeEEEEEE
Q 018414          144 -------KPAHIFLDELGIDYDEQDN--YV----------VIKH-----AALFTSTIMSKLLARPN-VKLFNAVAAEDLI  198 (356)
Q Consensus       144 -------~~~~~~l~~~G~~~~~~~~--~~----------~~~~-----~~~~~~~l~~~~~~~~g-v~i~~~~~v~~i~  198 (356)
                             ...++||.++|++|.....  +.          ...+     ...+...|++.+. +.+ +++++++.|++|+
T Consensus        84 ~~~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~d~tg~~l~~~L~~~~~-~~gnv~i~~~~~v~~l~  162 (602)
T 1kf6_A           84 DYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSL-QFPQIQRFDEHFVLDIL  162 (602)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCBCTTSSBCCBCCTTCSSCCEECSTTCHHHHHHHHHHHHHT-TCTTEEEEETEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHcCCCcccCCCCcccccccCCccCCeEEEcCCCCHHHHHHHHHHHHH-hCCCcEEEeCCEEEEEE
Confidence                   1245788889998865321  10          0111     3567788888876 456 9999999999999


Q ss_pred             EeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414          199 VKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF  244 (356)
Q Consensus       199 ~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~  244 (356)
                      .++++|.|+.+.+      ..   +++...++|+.||+|||+++..
T Consensus       163 ~~~g~v~Gv~~~~------~~---~G~~~~i~A~~VVlAtGg~s~~  199 (602)
T 1kf6_A          163 VDDGHVRGLVAMN------MM---EGTLVQIRANAVVMATGGAGRV  199 (602)
T ss_dssp             EETTEEEEEEEEE------TT---TTEEEEEECSCEEECCCCCGGG
T ss_pred             EeCCEEEEEEEEE------cC---CCcEEEEEcCeEEECCCCCccc
Confidence            9989998886531      01   1123479999999999998754

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.47  E-value=4.7e-13  Score=126.59  Aligned_cols=139  Identities=17%  Similarity=0.178  Sum_probs=88.5

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCC-cc-ccCCccch-----------hhhcc-------------
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG-GA-WLGGQLFS-----------AMVVR-------------  143 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg-~~-~~~g~~~~-----------~~~~~-------------  143 (356)
                      ++||+|||||++|+++|++|+++ |++|+||||...+++ .+ .+.+.+..           .+...             
T Consensus         4 ~~dvvIIG~G~~Gl~~A~~La~~-G~~V~vlE~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (369)
T 3dme_A            4 DIDCIVIGAGVVGLAIARALAAG-GHEVLVAEAAEGIGTGTSSRNSEVIHAGIYYPADSLKARLCVRGKHLLYEYCAARG   82 (369)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSSCSTTSSSCCEECCCCSSCTTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cCCEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCCCCCCccCcCCccccccCccCCCCCHhHHHHHHHHHHHHHHHHHcC
Confidence            58999999999999999999999 999999999864432 22 22221100           00000             


Q ss_pred             --------------c-------hHHHHHHHhCCC-cccc---------CC------eE----EEechHHHHHHHHHHHHc
Q 018414          144 --------------K-------PAHIFLDELGID-YDEQ---------DN------YV----VIKHAALFTSTIMSKLLA  182 (356)
Q Consensus       144 --------------~-------~~~~~l~~~G~~-~~~~---------~~------~~----~~~~~~~~~~~l~~~~~~  182 (356)
                                    .       ...+++..+|++ +...         ..      .+    ...+...+...|.+.+. 
T Consensus        83 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-  161 (369)
T 3dme_A           83 VPHQRLGKLIVATSDAEASQLDSIARRAGANGVDDLQHIDGAAARRLEPALHCTAALVSPSTGIVDSHALMLAYQGDAE-  161 (369)
T ss_dssp             CCEECCCEEEEECSHHHHTTHHHHHHHHHHTTCCCCEEEEHHHHHHHCTTCCCSEEEEETTCEEECHHHHHHHHHHHHH-
T ss_pred             CCcccCCEEEEecCHHHHHHHHHHHHHHHHcCCCceeecCHHHHHHhCCCceeeeeeECCCCEEECHHHHHHHHHHHHH-
Confidence                          0       011222334443 2110         00      00    12245677788888876 


Q ss_pred             CCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          183 RPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       183 ~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      +.|++++++++|+++..+++.++.|.+.+            ++..+++||.||+|+|.++
T Consensus       162 ~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~------------g~~~~~~a~~VV~A~G~~s  209 (369)
T 3dme_A          162 SDGAQLVFHTPLIAGRVRPEGGFELDFGG------------AEPMTLSCRVLINAAGLHA  209 (369)
T ss_dssp             HTTCEEECSCCEEEEEECTTSSEEEEECT------------TSCEEEEEEEEEECCGGGH
T ss_pred             HCCCEEECCCEEEEEEEcCCceEEEEECC------------CceeEEEeCEEEECCCcch
Confidence            57999999999999998876533455531            2236899999999999664

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=99.46  E-value=4.4e-13  Score=132.53  Aligned_cols=136  Identities=18%  Similarity=0.275  Sum_probs=96.1

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCc-cccCCccc---------hhhh----------c---------
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG-AWLGGQLF---------SAMV----------V---------  142 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~-~~~~g~~~---------~~~~----------~---------  142 (356)
                      ||+|||+|++|+++|+.|++. |++|+||||. ..++. .|.+|.+.         ...+          .         
T Consensus         1 DVvVIG~G~AGl~aA~~la~~-G~~V~viek~-~~~g~s~~a~Ggi~~~~~~~d~~~~~~~d~l~~g~~~~d~~~v~~~~   78 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRRA-GKKVTLISKR-IDGGSTPIAKGGVAASVGSDDSPELHAQDTIRVGDGLCDVKTVNYVT   78 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT-TCCEEEECSS-TTCSSGGGCCSCEECCCSTTCCHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHC-CCCEEEEeCC-CCCchHHHHhCCeEEeCCCCCCHHHHHHHHHHhcCCcCCHHHHHHHH
Confidence            899999999999999999999 9999999999 44443 33333211         0000          0         


Q ss_pred             --cchHHHHHHHhCCCcccc----C--CeEEEe-----chHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEE
Q 018414          143 --RKPAHIFLDELGIDYDEQ----D--NYVVIK-----HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVT  209 (356)
Q Consensus       143 --~~~~~~~l~~~G~~~~~~----~--~~~~~~-----~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~  209 (356)
                        ....++|+.++|++|+..    .  .++...     ....+...|++.+. +.|+++++++.| ++..+++++.++.+
T Consensus        79 ~~~~~~i~~l~~~Gv~~~~~~~~~~g~~~~r~~~~~d~~g~~l~~~L~~~~~-~~gv~i~~~~~v-~l~~~~~~v~Gv~v  156 (472)
T 2e5v_A           79 SEAKNVIETFESWGFEFEEDLRLEGGHTKRRVLHRTDETGREIFNFLLKLAR-EEGIPIIEDRLV-EIRVKDGKVTGFVT  156 (472)
T ss_dssp             HHHHHHHHHHHHTTCCCCSSCBCCTTCSSCCEECSSSCHHHHHHHHHHHHHH-HTTCCEECCCEE-EEEEETTEEEEEEE
T ss_pred             HHHHHHHHHHHHcCCCCCcccccccCcCcCcEEEeCCCCHHHHHHHHHHHHH-hCCCEEEECcEE-EEEEeCCEEEEEEE
Confidence              012357888899988651    1  111111     24567778888874 679999999999 99988889988876


Q ss_pred             cceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414          210 NWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF  244 (356)
Q Consensus       210 ~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~  244 (356)
                      .+             +..+++||.||+|||+++..
T Consensus       157 ~~-------------~~g~~~a~~VVlAtGg~~~~  178 (472)
T 2e5v_A          157 EK-------------RGLVEDVDKLVLATGGYSYL  178 (472)
T ss_dssp             TT-------------TEEECCCSEEEECCCCCGGG
T ss_pred             Ee-------------CCCeEEeeeEEECCCCCccc
Confidence            31             12347799999999998743

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=99.46  E-value=6.1e-13  Score=130.66  Aligned_cols=136  Identities=24%  Similarity=0.381  Sum_probs=94.5

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCC-CccccCCccchhhhccchHHHHHHHhCCCccc---------
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPG-GGAWLGGQLFSAMVVRKPAHIFLDELGIDYDE---------  159 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~G-g~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~---------  159 (356)
                      ++||+|||||++|+++|+.|+++ |++|+|+||...+. +..+.++.+         ..+.++++|+....         
T Consensus         6 ~~dVvIVGaG~aGl~aA~~La~~-G~~V~vlE~~~~~~~g~~~~g~~l---------~~~~l~~lg~~~~~~~~~~~~~~   75 (453)
T 3atr_A            6 KYDVLIIGGGFAGSSAAYQLSRR-GLKILLVDSKPWNRIGDKPCGDAV---------SKAHFDKLGMPYPKGEELENKIN   75 (453)
T ss_dssp             ECSEEEECCSHHHHHHHHHHSSS-SCCEEEECSSCGGGTTCSCCCCEE---------EHHHHHHTTCCCCCGGGEEEEEE
T ss_pred             cCCEEEECcCHHHHHHHHHHHHC-CCCEEEEECCCCCCCCcccccccc---------cHHHHHHhcCCCCchHHHHhhhc
Confidence            58999999999999999999999 99999999987542 222222211         12344444432110         


Q ss_pred             -------cC-------CeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCC
Q 018414          160 -------QD-------NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMD  225 (356)
Q Consensus       160 -------~~-------~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~  225 (356)
                             ..       ......+...+.+.|.+.+. +.|++++++++|+++..+++++.+|.+..      ..   +|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~a~-~~gv~i~~~~~v~~i~~~~~~v~gv~~~~------~~---~G~  145 (453)
T 3atr_A           76 GIKLYSPDMQTVWTVNGEGFELNAPLYNQRVLKEAQ-DRGVEIWDLTTAMKPIFEDGYVKGAVLFN------RR---TNE  145 (453)
T ss_dssp             EEEEECTTSSCEEEEEEEEEEECHHHHHHHHHHHHH-HTTCEEESSEEEEEEEEETTEEEEEEEEE------TT---TTE
T ss_pred             ceEEECCCCceEEeECCCcEEEcHHHHHHHHHHHHH-HcCCEEEeCcEEEEEEEECCEEEEEEEEE------cC---CCc
Confidence                   00       01123456778888888887 47999999999999999888888776641      00   112


Q ss_pred             CeEEEcCEEEEcCCCCCCCC
Q 018414          226 PNVMEAKVVVSSCGHDGPFG  245 (356)
Q Consensus       226 ~~~i~Ak~VI~AtGg~~~~~  245 (356)
                      ..+++||.||+|+|..+.+.
T Consensus       146 ~~~~~ad~VV~AdG~~s~vr  165 (453)
T 3atr_A          146 ELTVYSKVVVEATGYSRSFR  165 (453)
T ss_dssp             EEEEECSEEEECCGGGCTTG
T ss_pred             eEEEEcCEEEECcCCchhhH
Confidence            34799999999999877543

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=99.46  E-value=8.5e-13  Score=131.73  Aligned_cols=143  Identities=17%  Similarity=0.227  Sum_probs=95.5

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchh----hhccchHHHHHHHhCCCccc-----
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSA----MVVRKPAHIFLDELGIDYDE-----  159 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~----~~~~~~~~~~l~~~G~~~~~-----  159 (356)
                      .++||+|||||++|+++|+.|+++ |++|+||||...+...  .+..+...    ++......+.+...++.+..     
T Consensus         6 ~~~dVvIVGgG~aGl~aA~~La~~-G~~V~liE~~~~~~~~--~g~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~   82 (512)
T 3e1t_A            6 EVFDLIVIGGGPGGSTLASFVAMR-GHRVLLLEREAFPRHQ--IGESLLPATVHGICAMLGLTDEMKRAGFPIKRGGTFR   82 (512)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTT-TCCEEEECSSCSSCCC--SCCBCCHHHHTTHHHHTTCHHHHHTTTCCEECEEEEE
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhC-CCCEEEEccCCCCCCC--CCcccCcchHHHHHHHhCcHHHHHHcCCccccCceEE
Confidence            358999999999999999999999 9999999998743321  11111111    11001111223333322111     


Q ss_pred             ------------------cCCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCC
Q 018414          160 ------------------QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQ  221 (356)
Q Consensus       160 ------------------~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~  221 (356)
                                        ...+....+...+.+.|.+.+. +.|++++++++|+++..+++++.+|.+..          
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~-~~Gv~i~~~~~V~~v~~~~~~v~gv~~~~----------  151 (512)
T 3e1t_A           83 WGKEPEPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSE-RKGVDVRERHEVIDVLFEGERAVGVRYRN----------  151 (512)
T ss_dssp             CSSCSSCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHH-HTTCEEESSCEEEEEEEETTEEEEEEEEC----------
T ss_pred             ecCCccccccccccCCCCCcceeeEecHHHHHHHHHHHHH-hCCCEEEcCCEEEEEEEECCEEEEEEEEe----------
Confidence                              0112333456778888888886 47999999999999999999888887642          


Q ss_pred             CCCCCeEEEcCEEEEcCCCCCCCC
Q 018414          222 SCMDPNVMEAKVVVSSCGHDGPFG  245 (356)
Q Consensus       222 ~~g~~~~i~Ak~VI~AtGg~~~~~  245 (356)
                      .+|+..+++||.||+|+|.++.+.
T Consensus       152 ~dG~~~~i~ad~VI~AdG~~S~vr  175 (512)
T 3e1t_A          152 TEGVELMAHARFIVDASGNRTRVS  175 (512)
T ss_dssp             SSSCEEEEEEEEEEECCCTTCSSG
T ss_pred             CCCCEEEEEcCEEEECCCcchHHH
Confidence            012235899999999999887543

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=99.43  E-value=1.6e-12  Score=125.86  Aligned_cols=137  Identities=20%  Similarity=0.216  Sum_probs=88.3

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchh---hhccchHHHHHHHhCCCccc------c
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSA---MVVRKPAHIFLDELGIDYDE------Q  160 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~---~~~~~~~~~~l~~~G~~~~~------~  160 (356)
                      ++||+|||||++|+++|+.|+++ |++|+|+||...+...  .+..+...   .+......+.+.+.++.+..      .
T Consensus         5 ~~dVvIIGgG~aGl~~A~~La~~-G~~V~v~E~~~~~~~~--~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~   81 (421)
T 3nix_A            5 KVDVLVIGAGPAGTVAASLVNKS-GFKVKIVEKQKFPRFV--IGESLLPRCMEHLDEAGFLDAVKAQGFQQKFGAKFVRG   81 (421)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTT-TCCEEEECSSCSSCCC--SCCBCCGGGHHHHHHTTCHHHHHHTTCEEECEEEEEET
T ss_pred             cCcEEEECCCHHHHHHHHHHHhC-CCCEEEEeCCCCCCCc--ccCcccHhHHHHHHHcCChHHHHHcCCcccCCcEEEeC
Confidence            58999999999999999999999 9999999998644311  11111110   00001112233333322110      0


Q ss_pred             ---------------CCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEE-EEEEcceeeecccCCCCCC
Q 018414          161 ---------------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVG-GVVTNWALVSMNHDTQSCM  224 (356)
Q Consensus       161 ---------------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~-gv~~~~~~~~~~~~~~~~g  224 (356)
                                     ..+....+...+.+.|.+.+. +.|++++++++|+++..+++.+. .+...+            |
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~a~-~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~------------g  148 (421)
T 3nix_A           82 KEIADFNFSDQFSNGWNWTWQVPRGNFDKTLADEAA-RQGVDVEYEVGVTDIKFFGTDSVTTIEDIN------------G  148 (421)
T ss_dssp             TEEEEEETTSCSSCSCCCEEECCHHHHHHHHHHHHH-HHTCEEECSEEEEEEEEETTEEEEEEEETT------------S
T ss_pred             CeeEEEeehhhcCCCCCceeEECHHHHHHHHHHHHH-hCCCEEEcCCEEEEEEEeCCEEEEEEEcCC------------C
Confidence                           112334456788888888876 45999999999999998876543 233221            2


Q ss_pred             CCeEEEcCEEEEcCCCCC
Q 018414          225 DPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       225 ~~~~i~Ak~VI~AtGg~~  242 (356)
                      +..+++||.||+|+|..+
T Consensus       149 ~~~~~~a~~vV~A~G~~s  166 (421)
T 3nix_A          149 NKREIEARFIIDASGYGR  166 (421)
T ss_dssp             CEEEEEEEEEEECCGGGC
T ss_pred             CEEEEEcCEEEECCCCch
Confidence            234799999999999665

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=99.42  E-value=8.5e-13  Score=125.64  Aligned_cols=136  Identities=17%  Similarity=0.162  Sum_probs=89.7

Q ss_pred             CCcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCC-CccccCCccc--------------------h----h---
Q 018414           88 YADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPG-GGAWLGGQLF--------------------S----A---  139 (356)
Q Consensus        88 ~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~G-g~~~~~g~~~--------------------~----~---  139 (356)
                      ..++||+|||||++|+++|++|+ + |++|+||||...+| +.++..+..+                    .    .   
T Consensus         7 ~~~~dv~IIGaGi~Gls~A~~La-~-G~~V~vlE~~~~~g~~as~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   84 (381)
T 3nyc_A            7 PIEADYLVIGAGIAGASTGYWLS-A-HGRVVVLEREAQPGYHSTGRSAAHYTVAYGTPQVRALTAASRAFFDNPPAGFCE   84 (381)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHT-T-TSCEEEECSSSSTTSSGGGSCCCEECSSSSCHHHHHHHHHHHHHHHSCCTTSCS
T ss_pred             CCcCCEEEECCcHHHHHHHHHHh-C-CCCEEEEECCCCccccccccccceeecccCCHHHHHHHHHHHHHHHHhhhhhCC
Confidence            34689999999999999999999 7 99999999987665 3222111100                    0    0   


Q ss_pred             --hhc---------cc------hHHHHHHHhCCCcccc------------------CCeE----EEechHHHHHHHHHHH
Q 018414          140 --MVV---------RK------PAHIFLDELGIDYDEQ------------------DNYV----VIKHAALFTSTIMSKL  180 (356)
Q Consensus       140 --~~~---------~~------~~~~~l~~~G~~~~~~------------------~~~~----~~~~~~~~~~~l~~~~  180 (356)
                        .+.         ..      ...+++..+|+++...                  ..+.    ...+...+...|.+.+
T Consensus        85 ~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a  164 (381)
T 3nyc_A           85 HPLLSPRPEMVVDFSDDPEELRRQYESGKALVPQMRLLDAEQACSIVPVLRRDKVFGATYDPTGADIDTDALHQGYLRGI  164 (381)
T ss_dssp             SCSEEECCEEEECSSCCHHHHHHHHHHHHHHCTTCEEECHHHHHHHSTTBCGGGCCCEEEETTCEEECHHHHHHHHHHHH
T ss_pred             cccccccceEEEechHHHHHHHHHHHHHHHcCCCcEEeCHHHHHHhCCCcccccceEEEEcCCCceECHHHHHHHHHHHH
Confidence              000         00      1123344455533210                  0000    1235678888888888


Q ss_pred             HcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          181 LARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       181 ~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      . +.|++++++++|++|..++++ ++|.+.               ..+++||.||+|+|+++
T Consensus       165 ~-~~Gv~i~~~~~V~~i~~~~~~-~~V~t~---------------~g~i~a~~VV~A~G~~s  209 (381)
T 3nyc_A          165 R-RNQGQVLCNHEALEIRRVDGA-WEVRCD---------------AGSYRAAVLVNAAGAWC  209 (381)
T ss_dssp             H-HTTCEEESSCCCCEEEEETTE-EEEECS---------------SEEEEESEEEECCGGGH
T ss_pred             H-HCCCEEEcCCEEEEEEEeCCe-EEEEeC---------------CCEEEcCEEEECCChhH
Confidence            7 569999999999999988876 445543               24799999999999664

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=99.42  E-value=1.2e-12  Score=125.98  Aligned_cols=133  Identities=17%  Similarity=0.242  Sum_probs=87.6

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCC---------Ccc-
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI---------DYD-  158 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~---------~~~-  158 (356)
                      .++||+|||||++|+++|+.|+++ |++|+|+||...+..... +..+      .....+.++++|+         ++. 
T Consensus         5 ~~~dVvIVGaG~aGl~~A~~L~~~-G~~V~viE~~~~~~~~~~-~~~l------~~~~~~~l~~~g~~~~~~~~~~~~~~   76 (399)
T 2x3n_A            5 NHIDVLINGCGIGGAMLAYLLGRQ-GHRVVVVEQARRERAING-ADLL------KPAGIRVVEAAGLLAEVTRRGGRVRH   76 (399)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSCCC---CC-CCEE------CHHHHHHHHHTTCHHHHHHTTCEEEC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhC-CCcEEEEeCCCCCCccCc-eeeE------CchHHHHHHHcCcHHHHHHhCCCcce
Confidence            358999999999999999999999 999999999865421111 1011      1111222233222         111 


Q ss_pred             -----ccC--------------CeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEE-EEEEcceeeeccc
Q 018414          159 -----EQD--------------NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVG-GVVTNWALVSMNH  218 (356)
Q Consensus       159 -----~~~--------------~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~-gv~~~~~~~~~~~  218 (356)
                           ...              .+....+...+.+.|.+.+.+..|++++++++|+++..+++.+. .+.+.+       
T Consensus        77 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~-------  149 (399)
T 2x3n_A           77 ELEVYHDGELLRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLND-------  149 (399)
T ss_dssp             EEEEEETTEEEEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEETT-------
T ss_pred             eEEEeCCCCEEEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEECC-------
Confidence                 000              11223455778888888886334999999999999998877653 444432       


Q ss_pred             CCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          219 DTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       219 ~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                             +.+++||.||+|+|.++.
T Consensus       150 -------g~~~~ad~vV~AdG~~s~  167 (399)
T 2x3n_A          150 -------GRVLRPRVVVGADGIASY  167 (399)
T ss_dssp             -------SCEEEEEEEEECCCTTCH
T ss_pred             -------CCEEECCEEEECCCCChH
Confidence                   247999999999997764

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.41  E-value=2e-12  Score=123.45  Aligned_cols=136  Identities=18%  Similarity=0.269  Sum_probs=90.5

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc-ccCCccch-------------------hh-------hc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA-WLGGQLFS-------------------AM-------VV  142 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~-~~~g~~~~-------------------~~-------~~  142 (356)
                      ++||+|||||++|+++|++|+++ |++|+|||+....++.+ .+.|.+..                   .+       +.
T Consensus         5 ~~dVvIIGgGi~Gl~~A~~La~~-G~~V~lle~~~~~~gas~~~~g~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~   83 (382)
T 1y56_B            5 KSEIVVIGGGIVGVTIAHELAKR-GEEVTVIEKRFIGSGSTFRCGTGIRQQFNDEANVRVMKRSVELWKKYSEEYGFSFK   83 (382)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSTTCSHHHHCCCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCCCCCccccccCeeeecCCChHHHHHHHHHHHHHHHHHHHhCCCee
Confidence            58999999999999999999999 99999999985333322 22221110                   00       00


Q ss_pred             ---------cc-------hHHHHHHHhCCCcccc--------------CCe--EE------EechHHHHHHHHHHHHcCC
Q 018414          143 ---------RK-------PAHIFLDELGIDYDEQ--------------DNY--VV------IKHAALFTSTIMSKLLARP  184 (356)
Q Consensus       143 ---------~~-------~~~~~l~~~G~~~~~~--------------~~~--~~------~~~~~~~~~~l~~~~~~~~  184 (356)
                               ..       ...+++.++|+++...              ..+  ..      ..+...+...|.+.+. +.
T Consensus        84 ~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~  162 (382)
T 1y56_B           84 QTGYLFLLYDDEEVKTFKRNIEIQNKFGVPTKLITPEEAKEIVPLLDISEVIAASWNPTDGKADPFEATTAFAVKAK-EY  162 (382)
T ss_dssp             CCCEEEEECSHHHHHHHHHHHHHHHHTTCCCEEECHHHHHHSSTTCCCTTCCEEEEETTCCEECHHHHHHHHHHHHH-HT
T ss_pred             ccceEEEEeCHHHHHHHHHHHHHHHhcCCCcEEeCHHHHHHhCCCCCcccceEEEEcCCCeeECHHHHHHHHHHHHH-HC
Confidence                     00       0112233445443210              000  00      1245677788888876 57


Q ss_pred             CcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          185 NVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       185 gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      |++++++++|+++..+++++.+|.+.+               .+++||.||+|+|.++
T Consensus       163 Gv~i~~~~~v~~i~~~~~~v~gv~~~~---------------g~i~a~~VV~A~G~~s  205 (382)
T 1y56_B          163 GAKLLEYTEVKGFLIENNEIKGVKTNK---------------GIIKTGIVVNATNAWA  205 (382)
T ss_dssp             TCEEECSCCEEEEEESSSBEEEEEETT---------------EEEECSEEEECCGGGH
T ss_pred             CCEEECCceEEEEEEECCEEEEEEECC---------------cEEECCEEEECcchhH
Confidence            999999999999998888888777642               3799999999999765

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=99.39  E-value=3.3e-12  Score=124.46  Aligned_cols=138  Identities=18%  Similarity=0.171  Sum_probs=92.1

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccCCCCCccccC-----------Cccch------hh----------
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSVSPGGGAWLG-----------GQLFS------AM----------  140 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~~~Gg~~~~~-----------g~~~~------~~----------  140 (356)
                      .++||||||||++|+++|++|+++ |+ +|+||||....++.....           ...+.      .+          
T Consensus         5 ~~~dVvIIGgG~aGlsaA~~La~~-G~~~V~vlE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   83 (438)
T 3dje_A            5 KSSSLLIVGAGTWGTSTALHLARR-GYTNVTVLDPYPVPSAISAGNDVNKVISSGQYSNNKDEIEVNEILAEEAFNGWKN   83 (438)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHT-TCCCEEEEESSCSSCTTCTTCSSCEEECCCCSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHc-CCCcEEEEeCCCCCCCCccCCCCccEEEeccCCchhhhcchhHHHHHHHHHHHhh
Confidence            368999999999999999999999 99 999999987655432110           00000      00          


Q ss_pred             -------hcc---------chHHHHHHH-----hCCCcc-c---------------c----C--CeE-----EEechHHH
Q 018414          141 -------VVR---------KPAHIFLDE-----LGIDYD-E---------------Q----D--NYV-----VIKHAALF  172 (356)
Q Consensus       141 -------~~~---------~~~~~~l~~-----~G~~~~-~---------------~----~--~~~-----~~~~~~~~  172 (356)
                             +..         ....+.+.+     ++..+. .               .    .  .++     ...+...+
T Consensus        84 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~l~~~~~~g~~g~~~~~~~g~~~~~~~  163 (438)
T 3dje_A           84 DPLFKPYYHDTGLLMSACSQEGLDRLGVRVRPGEDPNLVELTRPEQFRKLAPEGVLQGDFPGWKGYFARSGAGWAHARNA  163 (438)
T ss_dssp             CTTTGGGEECCCEEEEECSHHHHHHHHHHHCGGGCTTCEEECSHHHHHTTSCTTTSCSCCTTCEEEEESSSCEEECHHHH
T ss_pred             CccccCcEeccceEEEecCcchHHHHHHHHhhcccCCceecCCHHHHHHhCCcccccCCCCCceEEEeCCCCEEecHHHH
Confidence                   000         011122221     132220 0               0    0  111     12235678


Q ss_pred             HHHHHHHHHcCCCcEEEcCe---EEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          173 TSTIMSKLLARPNVKLFNAV---AAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       173 ~~~l~~~~~~~~gv~i~~~~---~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      ...|.+.+. +.|++|++++   +|++|..+++++.+|.+.+              ..+++||.||+|+|+++
T Consensus       164 ~~~L~~~a~-~~Gv~i~~~t~~~~V~~i~~~~~~v~gV~t~~--------------G~~i~Ad~VV~AtG~~s  221 (438)
T 3dje_A          164 LVAAAREAQ-RMGVKFVTGTPQGRVVTLIFENNDVKGAVTAD--------------GKIWRAERTFLCAGASA  221 (438)
T ss_dssp             HHHHHHHHH-HTTCEEEESTTTTCEEEEEEETTEEEEEEETT--------------TEEEECSEEEECCGGGG
T ss_pred             HHHHHHHHH-hcCCEEEeCCcCceEEEEEecCCeEEEEEECC--------------CCEEECCEEEECCCCCh
Confidence            888888886 5799999999   9999999999999888752              35799999999999876

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=99.39  E-value=4.1e-12  Score=131.00  Aligned_cols=137  Identities=14%  Similarity=0.165  Sum_probs=89.0

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCC-ccc-cCCccchhhhcc------------chHHHHHH----
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG-GAW-LGGQLFSAMVVR------------KPAHIFLD----  151 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg-~~~-~~g~~~~~~~~~------------~~~~~~l~----  151 (356)
                      .+||+|||||++|+++|+.|+++ |++|+||||...+|+ .++ .+|.+.......            ....++++    
T Consensus       272 ~~DVvIIGgGiaGlsaA~~La~~-G~~V~vlEk~~~~g~gaS~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  350 (676)
T 3ps9_A          272 KREAAIIGGGIASALLSLALLRR-GWQVTLYCADEAPALGASGNRQGALYPLLSKHDEALNRFFSNAFTFARRFYDQLPV  350 (676)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTT-TCEEEEEESSSSSSCSTTCCSCEEECCCCCSSCHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCcccccCccCCCceecCcCCCCccHHHHHHHHHHHHHHHHHHHCCC
Confidence            48999999999999999999999 999999999766653 222 222211100000            00111122    


Q ss_pred             --------------------------HhCCCcc---c--------------c-CCeE----EEechHHHHHHHHHHHHcC
Q 018414          152 --------------------------ELGIDYD---E--------------Q-DNYV----VIKHAALFTSTIMSKLLAR  183 (356)
Q Consensus       152 --------------------------~~G~~~~---~--------------~-~~~~----~~~~~~~~~~~l~~~~~~~  183 (356)
                                                ..+++..   .              . ....    ...+...+...|.+.+. +
T Consensus       351 ~~~~~~~g~l~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~l~~~~gg~~~p~~g~v~p~~l~~aL~~~a~-~  429 (676)
T 3ps9_A          351 KFDHDWCGVTQLGWDEKSQHKIAQMLSMDLPAELAVAVEANAVEQITGVATNCSGITYPQGGWLCPAELTRNVLELAQ-Q  429 (676)
T ss_dssp             CCCEECCCEEEECCSHHHHHHHHHHHTSCCCTTTCEEECHHHHHHHHSSCCSSCEEEETTCEEECHHHHHHHHHHHHH-H
T ss_pred             CcCcCcCCeeeecCCHHHHHHHHHHHhcCCcHHHhhhCCHHHHHHhhCCCccCCcEEecCCeeeCHHHHHHHHHHHHH-h
Confidence                                      2233211   0              0 0000    12245678888888876 5


Q ss_pred             CCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          184 PNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       184 ~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      .|++++++++|++|..+++++ .|.+.+              +.+++||.||+|+|+++.
T Consensus       430 ~Gv~i~~~t~V~~l~~~~~~v-~V~t~~--------------G~~i~Ad~VVlAtG~~s~  474 (676)
T 3ps9_A          430 QGLQIYYQYQLQNFSRKDDCW-LLNFAG--------------DQQATHSVVVLANGHQIS  474 (676)
T ss_dssp             TTCEEEESCCEEEEEEETTEE-EEEETT--------------SCEEEESEEEECCGGGGG
T ss_pred             CCCEEEeCCeeeEEEEeCCeE-EEEECC--------------CCEEECCEEEECCCcchh
Confidence            699999999999999988875 455532              356999999999998763

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=99.38  E-value=5.9e-12  Score=125.31  Aligned_cols=135  Identities=20%  Similarity=0.188  Sum_probs=90.1

Q ss_pred             CCcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCC-----------
Q 018414           88 YADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID-----------  156 (356)
Q Consensus        88 ~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~-----------  156 (356)
                      ++++||+|||||++|+++|+.|+++ |++|+||||...++....  +     ........+.|+++|+.           
T Consensus         9 ~~~~dVlIVGaGpaGl~~A~~La~~-G~~v~vlE~~~~~~~~~r--~-----~~l~~~~~~~l~~lGl~~~~~~~~~~~~   80 (500)
T 2qa1_A            9 RSDAAVIVVGAGPAGMMLAGELRLA-GVEVVVLERLVERTGESR--G-----LGFTARTMEVFDQRGILPRFGEVETSTQ   80 (500)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHT-TCCEEEEESCCC-CCCCC--S-----EEECHHHHHHHHTTTCGGGGCSCCBCCE
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHC-CCCEEEEeCCCCCCCCCC--c-----ceECHHHHHHHHHCCCHHHHHhcccccc
Confidence            4469999999999999999999999 999999999876542211  0     11112223344444331           


Q ss_pred             -------ccc--c---CCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCC
Q 018414          157 -------YDE--Q---DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCM  224 (356)
Q Consensus       157 -------~~~--~---~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g  224 (356)
                             ++.  .   ..+....+...+.+.|.+.+. +.|++++++++|+++..+++.+. +.+.++          .+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~-~~gv~v~~~~~v~~i~~~~~~v~-v~~~~~----------~g  148 (500)
T 2qa1_A           81 GHFGGLPIDFGVLEGAWQAAKTVPQSVTETHLEQWAT-GLGADIRRGHEVLSLTDDGAGVT-VEVRGP----------EG  148 (500)
T ss_dssp             EEETTEEEEGGGSTTGGGCEEEEEHHHHHHHHHHHHH-HTTCEEEETCEEEEEEEETTEEE-EEEEET----------TE
T ss_pred             ccccceecccccCCCCCCceeecCHHHHHHHHHHHHH-HCCCEEECCcEEEEEEEcCCeEE-EEEEcC----------CC
Confidence                   100  0   012233445677778888776 46999999999999999888765 443320          01


Q ss_pred             CCeEEEcCEEEEcCCCCCC
Q 018414          225 DPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       225 ~~~~i~Ak~VI~AtGg~~~  243 (356)
                       ..+++||+||.|+|+++.
T Consensus       149 -~~~~~a~~vVgADG~~S~  166 (500)
T 2qa1_A          149 -KHTLRAAYLVGCDGGRSS  166 (500)
T ss_dssp             -EEEEEESEEEECCCTTCH
T ss_pred             -CEEEEeCEEEECCCcchH
Confidence             247999999999997763

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=99.38  E-value=2.2e-12  Score=130.16  Aligned_cols=143  Identities=23%  Similarity=0.267  Sum_probs=91.0

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccc-------hh----hhcc--------------
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLF-------SA----MVVR--------------  143 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~-------~~----~~~~--------------  143 (356)
                      .+|||+|||||++|+++|+.|+++ |++|+||||+...+|++.....+.       ..    +...              
T Consensus        17 ~~~DVvVIGgGi~Gl~~A~~La~~-G~~V~LlEk~d~~~GtS~~ss~lihgG~ryl~~~~~~l~~e~~~e~~~l~~~ap~   95 (561)
T 3da1_A           17 KQLDLLVIGGGITGAGIALDAQVR-GIQTGLVEMNDFASGTSSRSTKLVHGGLRYLKQFEIKLVAEVGKERAIVYENAPH   95 (561)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHTT-TCCEEEEESSSTTCSGGGSSCCEECC---------------CHHHHHHHHHHCTT
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhC-CCcEEEEECCCCCCCcccCCcCccccchHHHHhcCHHHHHHHHHHHHHHHHhCch
Confidence            469999999999999999999999 999999999976655443221110       00    0000              


Q ss_pred             ------------c--hHHHHHHHhCCC----------------------------cccc---CCe---EEEechHHHHHH
Q 018414          144 ------------K--PAHIFLDELGID----------------------------YDEQ---DNY---VVIKHAALFTST  175 (356)
Q Consensus       144 ------------~--~~~~~l~~~G~~----------------------------~~~~---~~~---~~~~~~~~~~~~  175 (356)
                                  .  ....+....+..                            +...   ..+   ....+...+...
T Consensus        96 l~~~~~~~~p~~~~~~~~~~~~~~g~~~~d~l~~~~~~~~~~~l~~~~~~~~~P~l~~~~~~gg~~~~dg~vd~~~l~~~  175 (561)
T 3da1_A           96 VTTPEWMLLPIFKDGTFGKFSTSLGLKVYDYLADVRKDERRYMLNEKQTLEKEPLLRKENLKGGGIYVEYRTDDARLTLE  175 (561)
T ss_dssp             TCEEEEEEEEECC---------------------------CEEECHHHHHHHCTTSCCTTCCEEEEEEEEECCHHHHHHH
T ss_pred             hccccceeEeecCCccHHHHHHHhHHHHHHHhhcccCCCCcEEECHHHHHHhCccCChhhceeEEEecCceEcHHHHHHH
Confidence                        0  000000000000                            0000   000   112345677777


Q ss_pred             HHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          176 IMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       176 l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      |.+.+. +.|++++++++|+++..+++++.+|.+.+      ..   +++..+++||.||+|+|.++
T Consensus       176 L~~~a~-~~G~~i~~~~~V~~l~~~~g~v~gV~~~d------~~---tg~~~~i~A~~VV~AaG~~s  232 (561)
T 3da1_A          176 IMKEAV-ARGAVALNYMKVESFIYDQGKVVGVVAKD------RL---TDTTHTIYAKKVVNAAGPWV  232 (561)
T ss_dssp             HHHHHH-HTTCEEEESEEEEEEEEETTEEEEEEEEE------TT---TCCEEEEEEEEEEECCGGGH
T ss_pred             HHHHHH-HcCCEEEcCCEEEEEEEcCCeEEEEEEEE------cC---CCceEEEECCEEEECCCcch
Confidence            777776 57999999999999999999998888753      11   12346899999999999765

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=99.38  E-value=6.7e-12  Score=124.88  Aligned_cols=135  Identities=24%  Similarity=0.247  Sum_probs=91.7

Q ss_pred             CCcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCC-----------
Q 018414           88 YADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID-----------  156 (356)
Q Consensus        88 ~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~-----------  156 (356)
                      ..++||+|||||++|+++|+.|+++ |++|+||||...++....  +     ........+.|+++|+.           
T Consensus        10 ~~~~dVlIVGaGpaGl~~A~~La~~-G~~v~vlE~~~~~~~~~r--~-----~~l~~~~~~~l~~lGl~~~~~~~~~~~~   81 (499)
T 2qa2_A           10 RSDASVIVVGAGPAGLMLAGELRLG-GVDVMVLEQLPQRTGESR--G-----LGFTARTMEVFDQRGILPAFGPVETSTQ   81 (499)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESCSSCCCCCC--S-----EEECHHHHHHHHHTTCGGGGCSCCEESE
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHC-CCCEEEEECCCCCCCCCc--e-----eEECHHHHHHHHHCCCHHHHHhcccccc
Confidence            3469999999999999999999999 999999999876542111  0     11122334445554432           


Q ss_pred             -------ccc--c---CCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCC
Q 018414          157 -------YDE--Q---DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCM  224 (356)
Q Consensus       157 -------~~~--~---~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g  224 (356)
                             ++.  .   ..+....+...+.+.|.+.+. +.|++++++++|+++..+++.+. +.+.+       .   .+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~-~~gv~v~~~~~v~~i~~~~~~v~-v~~~~-------~---~g  149 (499)
T 2qa2_A           82 GHFGGRPVDFGVLEGAHYGVKAVPQSTTESVLEEWAL-GRGAELLRGHTVRALTDEGDHVV-VEVEG-------P---DG  149 (499)
T ss_dssp             EEETTEEEEGGGSTTCCCEEEEEEHHHHHHHHHHHHH-HTTCEEEESCEEEEEEECSSCEE-EEEEC-------S---SC
T ss_pred             ceecceecccccCCCCCCceEecCHHHHHHHHHHHHH-hCCCEEEcCCEEEEEEEeCCEEE-EEEEc-------C---CC
Confidence                   100  0   112234456777788888876 46999999999999998877665 44331       0   01


Q ss_pred             CCeEEEcCEEEEcCCCCCC
Q 018414          225 DPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       225 ~~~~i~Ak~VI~AtGg~~~  243 (356)
                       ..+++||+||.|+|.++.
T Consensus       150 -~~~~~a~~vVgADG~~S~  167 (499)
T 2qa2_A          150 -PRSLTTRYVVGCDGGRST  167 (499)
T ss_dssp             -EEEEEEEEEEECCCTTCH
T ss_pred             -cEEEEeCEEEEccCcccH
Confidence             257999999999997763

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=99.37  E-value=5e-12  Score=122.09  Aligned_cols=131  Identities=15%  Similarity=0.123  Sum_probs=86.1

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCC---------Cccc
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI---------DYDE  159 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~---------~~~~  159 (356)
                      .+|||+|||||++|+++|+.|+++ |++|+|+||...+.....  +     ........+.|+++|+         +...
T Consensus        22 ~~~dV~IVGaG~aGl~~A~~La~~-G~~V~v~E~~~~~~~~~~--~-----~~l~~~~~~~l~~lg~~~~~~~~~~~~~~   93 (407)
T 3rp8_A           22 GHMKAIVIGAGIGGLSAAVALKQS-GIDCDVYEAVKEIKPVGA--A-----ISVWPNGVKCMAHLGMGDIMETFGGPLRR   93 (407)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSCC----C--E-----EEECHHHHHHHHHTTCHHHHHHHSCCCCE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC-CCCEEEEeCCCCCCCcCe--e-----EEECHHHHHHHHHCCCHHHHHhhcCCCcc
Confidence            469999999999999999999999 999999999876532110  0     0111122233333332         1110


Q ss_pred             ------c-C----------------CeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeec
Q 018414          160 ------Q-D----------------NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSM  216 (356)
Q Consensus       160 ------~-~----------------~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~  216 (356)
                            . +                ......+...+.+.|++.+. +  ++++++++|+++..+++.+. +.+.+     
T Consensus        94 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~-~--~~i~~~~~v~~i~~~~~~v~-v~~~~-----  164 (407)
T 3rp8_A           94 MAYRDFRSGENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWG-R--DSVQFGKRVTRCEEDADGVT-VWFTD-----  164 (407)
T ss_dssp             EEEEETTTCCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHC-G--GGEEESCCEEEEEEETTEEE-EEETT-----
T ss_pred             eEEEECCCCCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCC-c--CEEEECCEEEEEEecCCcEE-EEEcC-----
Confidence                  0 0                11122345677778877775 3  89999999999999888654 33432     


Q ss_pred             ccCCCCCCCCeEEEcCEEEEcCCCCCCCC
Q 018414          217 NHDTQSCMDPNVMEAKVVVSSCGHDGPFG  245 (356)
Q Consensus       217 ~~~~~~~g~~~~i~Ak~VI~AtGg~~~~~  245 (356)
                               +.+++||.||.|+|.++.+.
T Consensus       165 ---------g~~~~a~~vV~AdG~~S~vr  184 (407)
T 3rp8_A          165 ---------GSSASGDLLIAADGSHSALR  184 (407)
T ss_dssp             ---------SCEEEESEEEECCCTTCSSH
T ss_pred             ---------CCEEeeCEEEECCCcChHHH
Confidence                     35799999999999887543

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=99.37  E-value=6.5e-12  Score=125.90  Aligned_cols=133  Identities=16%  Similarity=0.128  Sum_probs=87.0

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhC---------CCccc
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELG---------IDYDE  159 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G---------~~~~~  159 (356)
                      .++||+|||||++|+++|+.|+++ |++|+||||...++...... .      ......+.++++|         ..+..
T Consensus         4 ~~~dVlIVGaG~aGl~~A~~La~~-G~~v~viEr~~~~~~~~~~~-~------l~~~~~~~l~~lGl~~~~~~~~~~~~~   75 (535)
T 3ihg_A            4 HEVDVLVVGAGLGGLSTAMFLARQ-GVRVLVVERRPGLSPYPRAA-G------QNPRTMELLRIGGVADEVVRADDIRGT   75 (535)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHTT-TCCEEEECSSSSCCCCCCSC-C------BCHHHHHHHHHTTCHHHHHHSCCSSCT
T ss_pred             ccCcEEEECcCHHHHHHHHHHHHC-CCCEEEEeCCCCCCCCCccc-e------ECHHHHHHHHHcCCHHHHHhhCCCccc
Confidence            358999999999999999999999 99999999987654221111 1      1111222222222         22111


Q ss_pred             c----------------------------------CCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCC---
Q 018414          160 Q----------------------------------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG---  202 (356)
Q Consensus       160 ~----------------------------------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~---  202 (356)
                      .                                  .......+...+...|.+.+.+ .|++++++++|+++..+++   
T Consensus        76 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~-~gv~i~~~~~v~~i~~~~~~~~  154 (535)
T 3ihg_A           76 QGDFVIRLAESVRGEILRTVSESFDDMVAATEPCTPAGWAMLSQDKLEPILLAQARK-HGGAIRFGTRLLSFRQHDDDAG  154 (535)
T ss_dssp             TSCCEEEEESSSSSCEEEEEESCHHHHHHTTGGGCSCCCBCCCHHHHHHHHHHHHHH-TTCEEESSCEEEEEEEECGGGC
T ss_pred             ccceeeeEEeccCCceeeeccccccccccccccCCCCcccccCHHHHHHHHHHHHHh-CCCEEEeCCEEEEEEECCCCcc
Confidence            0                                  0001122446677788888774 5999999999999998876   


Q ss_pred             -eEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          203 -RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       203 -~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                       .+......       .+     ...+++||+||.|+|.++
T Consensus       155 ~~v~v~~~~-------~~-----~~~~i~a~~vV~AdG~~S  183 (535)
T 3ihg_A          155 AGVTARLAG-------PD-----GEYDLRAGYLVGADGNRS  183 (535)
T ss_dssp             SEEEEEEEE-------TT-----EEEEEEEEEEEECCCTTC
T ss_pred             ccEEEEEEc-------CC-----CeEEEEeCEEEECCCCcc
Confidence             55533221       00     136799999999999876

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=99.36  E-value=4e-12  Score=122.18  Aligned_cols=136  Identities=21%  Similarity=0.220  Sum_probs=88.7

Q ss_pred             cccEEEECCCHHHHHHHHHhhc-CCC-CeEEEEeccCCCCCcccc-CCccchhh--------hc----------------
Q 018414           90 DTDVVVVGAGSAGLSCAYELSK-NPN-IQIAIIEQSVSPGGGAWL-GGQLFSAM--------VV----------------  142 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~-~~G-~~V~llEk~~~~Gg~~~~-~g~~~~~~--------~~----------------  142 (356)
                      ++||+|||||++|+++|++|++ + | .+|+||||....++.++. .|.+....        ..                
T Consensus        21 ~~dVvIIG~G~~Gl~~A~~La~~~-G~~~V~vlE~~~~~~gas~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~   99 (405)
T 2gag_B           21 SYDAIIVGGGGHGLATAYFLAKNH-GITNVAVLEKGWLAGGNMARNTTIIRSNYLWDESAGIYEKSLKLWEQLPEDLEYD   99 (405)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHH-CCCCEEEECSSSTTCSGGGTSCCCBCCCCSSHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             cCCEEEECcCHHHHHHHHHHHHhc-CCCcEEEEeCCCCCCCcccccCceeeecCCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            5899999999999999999999 9 9 999999999744433322 22111000        00                


Q ss_pred             ------------c-c-------hHHHHHHHhCCCcccc---------C----------Ce--EE------EechHHHHHH
Q 018414          143 ------------R-K-------PAHIFLDELGIDYDEQ---------D----------NY--VV------IKHAALFTST  175 (356)
Q Consensus       143 ------------~-~-------~~~~~l~~~G~~~~~~---------~----------~~--~~------~~~~~~~~~~  175 (356)
                                  . .       ...+++.++|+++...         .          .+  ..      ..+...+.+.
T Consensus       100 ~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (405)
T 2gag_B          100 FLFSQRGVLNLAHTLGDVRESVRRVEANKLNGVDAEWLDPSQVKEACPIINTSDDIRYPVMGATWQPRAGIAKHDHVAWA  179 (405)
T ss_dssp             CCCBCCCEEEEECSHHHHHHHHHHHHHHHTBTCCCEEECHHHHHHHCTTSCCSTTSSSCCCEEEEETTCBBCCHHHHHHH
T ss_pred             cCEecccEEEEEcCHHHHHHHHHHHHHHHhcCCCceEeCHHHHHhhCCCCcccccccccceeEEEeCCCccCCHHHHHHH
Confidence                        0 0       0112222334332110         0          00  00      1134567778


Q ss_pred             HHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          176 IMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       176 l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      |.+.+. +.|++++++++|+++..+++++.++.+.+               .+++||.||+|+|+++
T Consensus       180 l~~~~~-~~g~~i~~~~~v~~i~~~~~~~~~v~~~~---------------g~~~a~~vV~a~G~~s  230 (405)
T 2gag_B          180 FARKAN-EMGVDIIQNCEVTGFIKDGEKVTGVKTTR---------------GTIHAGKVALAGAGHS  230 (405)
T ss_dssp             HHHHHH-HTTCEEECSCCEEEEEESSSBEEEEEETT---------------CCEEEEEEEECCGGGH
T ss_pred             HHHHHH-HCCCEEEcCCeEEEEEEeCCEEEEEEeCC---------------ceEECCEEEECCchhH
Confidence            888776 57999999999999998888877777642               2689999999999765

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=99.36  E-value=7.6e-12  Score=119.77  Aligned_cols=127  Identities=19%  Similarity=0.147  Sum_probs=86.3

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCC---------cc--
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID---------YD--  158 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~---------~~--  158 (356)
                      .+||+|||||++|+++|+.|+++ |++|+|+||...++....  +.     .......+.++++|+.         ..  
T Consensus        11 ~~dVvIVGaG~aGl~~A~~L~~~-G~~v~viE~~~~~~~~~~--~~-----~l~~~~~~~l~~~g~~~~~~~~~~~~~~~   82 (379)
T 3alj_A           11 TRRAEVAGGGFAGLTAAIALKQN-GWDVRLHEKSSELRAFGA--GI-----YLWHNGLRVLEGLGALDDVLQGSHTPPTY   82 (379)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSCCCCSS--EE-----EEEHHHHHHHHHTTCHHHHHTTCBCCSCE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHC-CCCEEEEecCCCCCCCCc--eE-----EeCccHHHHHHHcCCHHHHHhhCCCccce
Confidence            58999999999999999999999 999999999876653211  11     1111223334444331         10  


Q ss_pred             ---cc----------CCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCC
Q 018414          159 ---EQ----------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMD  225 (356)
Q Consensus       159 ---~~----------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~  225 (356)
                         ..          .......+...+.+.|.+.+. +.|++++++++|+++.. ++   .+.+.+              
T Consensus        83 ~~~~~g~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~gv~i~~~~~v~~i~~-~~---~v~~~~--------------  143 (379)
T 3alj_A           83 ETWMHNKSVSKETFNGLPWRIMTRSHLHDALVNRAR-ALGVDISVNSEAVAADP-VG---RLTLQT--------------  143 (379)
T ss_dssp             EEEETTEEEEEECGGGCCEEEEEHHHHHHHHHHHHH-HTTCEEESSCCEEEEET-TT---EEEETT--------------
T ss_pred             EEEeCCceeeeccCCCCceEEECHHHHHHHHHHHHH-hcCCEEEeCCEEEEEEe-CC---EEEECC--------------
Confidence               00          001223455778888888887 46999999999999976 44   344432              


Q ss_pred             CeEEEcCEEEEcCCCCCC
Q 018414          226 PNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       226 ~~~i~Ak~VI~AtGg~~~  243 (356)
                      +.++++|.||+|+|..+.
T Consensus       144 g~~~~ad~vV~AdG~~s~  161 (379)
T 3alj_A          144 GEVLEADLIVGADGVGSK  161 (379)
T ss_dssp             SCEEECSEEEECCCTTCH
T ss_pred             CCEEEcCEEEECCCccHH
Confidence            357999999999998764

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=99.35  E-value=4.4e-12  Score=128.61  Aligned_cols=133  Identities=17%  Similarity=0.248  Sum_probs=90.1

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCC---------Cccc
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI---------DYDE  159 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~---------~~~~  159 (356)
                      .++||+|||||++|+++|+.|+++ |++|+|||+...++...  +..+..      .....++.+|+         ....
T Consensus        22 ~~~DVvIVGgG~AGl~aA~~Lar~-G~~V~LiEr~~~~~~~~--G~~l~p------~~~~~l~~lGl~~~l~~~~~~~~~   92 (591)
T 3i3l_A           22 TRSKVAIIGGGPAGSVAGLTLHKL-GHDVTIYERSAFPRYRV--GESLLP------GTMSILNRLGLQEKIDAQNYVKKP   92 (591)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSCSSCCCC--CCBCCH------HHHHHHHHTTCHHHHHHHCCEEEC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHcC-CCCEEEEcCCCCCCCce--eeeECH------HHHHHHHHcCCcHHHHhcCCcccC
Confidence            369999999999999999999999 99999999986544321  111111      11222222222         1100


Q ss_pred             --------c-----------------CCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceee
Q 018414          160 --------Q-----------------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALV  214 (356)
Q Consensus       160 --------~-----------------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~  214 (356)
                              .                 ..+....+...+...|.+.+. +.|++++++++|+++..+++.+.+|.+.+   
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~-~~Gv~i~~g~~V~~v~~~~g~~~~V~~~~---  168 (591)
T 3i3l_A           93 SATFLWGQDQAPWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEAR-SRGITVHEETPVTDVDLSDPDRVVLTVRR---  168 (591)
T ss_dssp             EEEEECSSSCCCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHH-HTTCEEETTCCEEEEECCSTTCEEEEEEE---
T ss_pred             CcEEEecCCCccceeecccccccccccCeeEEEcHHHHHHHHHHHHH-hCCCEEEeCCEEEEEEEcCCCEEEEEEec---
Confidence                    0                 011223456778888888876 57999999999999988766666676641   


Q ss_pred             ecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          215 SMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       215 ~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                              +|+..+++||.||+|+|..+
T Consensus       169 --------~G~~~~i~AdlVV~AdG~~S  188 (591)
T 3i3l_A          169 --------GGESVTVESDFVIDAGGSGG  188 (591)
T ss_dssp             --------TTEEEEEEESEEEECCGGGC
T ss_pred             --------CCceEEEEcCEEEECCCCcc
Confidence                    11236799999999999765

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=99.35  E-value=1.2e-11  Score=125.05  Aligned_cols=137  Identities=23%  Similarity=0.271  Sum_probs=89.9

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC-CCCCccccC--Cccchhhhcc------chHHHHHHHhCCCcccc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV-SPGGGAWLG--GQLFSAMVVR------KPAHIFLDELGIDYDEQ  160 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~-~~Gg~~~~~--g~~~~~~~~~------~~~~~~l~~~G~~~~~~  160 (356)
                      +|||+|||||++|+.||+.|++. |.+|+|||+.. .+|...++.  +.+....+..      .....+++..++.|...
T Consensus        27 ~yDVIVIGgG~AGl~AAlalAr~-G~kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~f~~l  105 (637)
T 2zxi_A           27 EFDVVVIGGGHAGIEAALAAARM-GAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQFKML  105 (637)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHT-TCCEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEEEEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHHC-CCCEEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhhcccceeec
Confidence            59999999999999999999999 99999999974 344321110  1110000000      01112233344444321


Q ss_pred             C--------CeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcC
Q 018414          161 D--------NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAK  232 (356)
Q Consensus       161 ~--------~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak  232 (356)
                      .        ......+...+...|.+.+.+..|++++ +++|+++..+++++.+|.+.+              +.+++||
T Consensus       106 ~~~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~-~~~Vt~L~~e~g~V~GV~t~d--------------G~~i~Ad  170 (637)
T 2zxi_A          106 NTRKGKAVQSPRAQADKKRYREYMKKVCENQENLYIK-QEEVVDIIVKNNQVVGVRTNL--------------GVEYKTK  170 (637)
T ss_dssp             STTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ESCEEEEEESSSBEEEEEETT--------------SCEEECS
T ss_pred             ccccCccccchhhhCCHHHHHHHHHHHHHhCCCCEEE-EeEEEEEEecCCEEEEEEECC--------------CcEEEeC
Confidence            0        0111234566777777777644799995 569999999889998888753              3679999


Q ss_pred             EEEEcCCCCC
Q 018414          233 VVVSSCGHDG  242 (356)
Q Consensus       233 ~VI~AtGg~~  242 (356)
                      .||+|||++.
T Consensus       171 aVVLATG~~s  180 (637)
T 2zxi_A          171 AVVVTTGTFL  180 (637)
T ss_dssp             EEEECCTTCB
T ss_pred             EEEEccCCCc
Confidence            9999999864

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=99.34  E-value=5.6e-12  Score=127.84  Aligned_cols=145  Identities=23%  Similarity=0.279  Sum_probs=93.1

Q ss_pred             cccEEEECCCHHHHHHHHHhhcC-----CCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccc-----
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKN-----PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDE-----  159 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~-----~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~-----  159 (356)
                      +|||+|||||++|+++|+.|++.     +|++|+||||...+|+....++.+....+..  ....+.+.+.++..     
T Consensus        35 ~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~l~~~~l~~--ll~~~~~~g~~~~~~~~~~  112 (584)
T 2gmh_A           35 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEE--LFPDWKEKGAPLNTPVTED  112 (584)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHH--HCTTHHHHTCCCCEECCEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCccccccccCHHHHHH--HHHHHHhcCCceeeeechh
Confidence            58999999999999999999985     2799999999987776544333322111000  00001112221110     


Q ss_pred             ---------------------cCCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeC-CeEEEEEEcceeeecc
Q 018414          160 ---------------------QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-GRVGGVVTNWALVSMN  217 (356)
Q Consensus       160 ---------------------~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~-~~v~gv~~~~~~~~~~  217 (356)
                                           ........+...+.+.|.+.+. +.|++|+++++|+++..++ +++.+|.+.+..+.. 
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~-~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~-  190 (584)
T 2gmh_A          113 RFGILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAE-ALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQK-  190 (584)
T ss_dssp             EEEEECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHH-HTTCEEETTCCEEEEEECTTSSEEEEEECCEEECT-
T ss_pred             heeeeccCCCccccccCccccccCCCEEEeHHHHHHHHHHHHH-HcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccC-
Confidence                                 0000123345678888888886 4599999999999999875 578888764210000 


Q ss_pred             cCCCCCCC-------CeEEEcCEEEEcCCCCCC
Q 018414          218 HDTQSCMD-------PNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       218 ~~~~~~g~-------~~~i~Ak~VI~AtGg~~~  243 (356)
                           +|+       ..+++||+||+|+|+++.
T Consensus       191 -----~G~~~~~~~~g~~i~Ad~VV~AdG~~S~  218 (584)
T 2gmh_A          191 -----DGAPKTTFERGLELHAKVTIFAEGCHGH  218 (584)
T ss_dssp             -----TSCEEEEEECCCEEECSEEEECCCTTCH
T ss_pred             -----CCCcccccCCceEEECCEEEEeeCCCch
Confidence                 111       257999999999998874

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=99.34  E-value=3.4e-12  Score=122.60  Aligned_cols=136  Identities=20%  Similarity=0.164  Sum_probs=86.3

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCC-ccccCCccchhhhccchHHHHHHHhCCCc---------c-
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG-GAWLGGQLFSAMVVRKPAHIFLDELGIDY---------D-  158 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg-~~~~~g~~~~~~~~~~~~~~~l~~~G~~~---------~-  158 (356)
                      ++||+|||||++|+++|+.|++. |++|+|+||...+.+ .....+.      ......+.|+++|+.-         . 
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~~-G~~v~v~E~~~~~~~~~~~~~g~------l~~~~~~~l~~lg~~~~~~~~~~~~~~   74 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHKA-GIDNVILERQTPDYVLGRIRAGV------LEQGMVDLLREAGVDRRMARDGLVHEG   74 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHH-TCCEEEECSSCHHHHHTCCCCCE------ECHHHHHHHHHTTCCHHHHHHCEEESC
T ss_pred             CccEEEECCCHHHHHHHHHHHHC-CCCEEEEeCCCCCcccCCCceEe------ECHHHHHHHHHcCCcHHHHhcCCccce
Confidence            48999999999999999999999 999999999863210 0000111      1122334444444321         0 


Q ss_pred             ----cc-------------CCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEE-cceeeecccCC
Q 018414          159 ----EQ-------------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVT-NWALVSMNHDT  220 (356)
Q Consensus       159 ----~~-------------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~-~~~~~~~~~~~  220 (356)
                          ..             .......+...+.+.|++.+. +.|++++++++|+++..+++....+.+ .+         
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~~g~~i~~~~~v~~i~~~~~~~~~v~~~~~---------  144 (394)
T 1k0i_A           75 VEIAFAGQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEARE-ACGATTVYQAAEVRLHDLQGERPYVTFERD---------  144 (394)
T ss_dssp             EEEEETTEEEEECHHHHHTSCCEEECCHHHHHHHHHHHHH-HTTCEEESSCEEEEEECTTSSSCEEEEEET---------
T ss_pred             EEEEECCceEEeccccccCCCceEEechHHHHHHHHHHHH-hcCCeEEeceeEEEEEEecCCceEEEEecC---------
Confidence                00             111122234567777888776 459999999999999876432223433 21         


Q ss_pred             CCCCCCeEEEcCEEEEcCCCCCCCC
Q 018414          221 QSCMDPNVMEAKVVVSSCGHDGPFG  245 (356)
Q Consensus       221 ~~~g~~~~i~Ak~VI~AtGg~~~~~  245 (356)
                         |+..+++||.||.|+|.++.+.
T Consensus       145 ---g~~~~~~a~~vV~AdG~~S~vr  166 (394)
T 1k0i_A          145 ---GERLRLDCDYIAGCDGFHGISR  166 (394)
T ss_dssp             ---TEEEEEECSEEEECCCTTCSTG
T ss_pred             ---CcEEEEEeCEEEECCCCCcHHH
Confidence               1123799999999999887643

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=99.34  E-value=7.1e-12  Score=119.58  Aligned_cols=136  Identities=18%  Similarity=0.177  Sum_probs=86.3

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhc-c--c-------hH-------HHHH-
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVV-R--K-------PA-------HIFL-  150 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~-~--~-------~~-------~~~l-  150 (356)
                      .++||+|||||++|+++|+.|+++ |++|+|||+....++.++..+.+...... .  .       ..       .+.+ 
T Consensus        16 ~~~dvvIIGgG~~Gl~~A~~La~~-G~~V~llE~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   94 (382)
T 1ryi_A           16 RHYEAVVIGGGIIGSAIAYYLAKE-NKNTALFESGTMGGRTTSAAAGMLGAHAECEERDAFFDFAMHSQRLYKGLGEELY   94 (382)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSTTTTHHHHCCCBCCGGGSCSSCSHHHHHHHHHHHHTTTHHHHHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhC-CCcEEEEeCCCCCcccchhcCceeccCccCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            469999999999999999999999 99999999986554433322221111100 0  0       00       0001 


Q ss_pred             HHhCCCcc--cc----------------------------------------CC----eE----EEechHHHHHHHHHHH
Q 018414          151 DELGIDYD--EQ----------------------------------------DN----YV----VIKHAALFTSTIMSKL  180 (356)
Q Consensus       151 ~~~G~~~~--~~----------------------------------------~~----~~----~~~~~~~~~~~l~~~~  180 (356)
                      ...++.+.  ..                                        ..    +.    ...+...+.+.|.+.+
T Consensus        95 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  174 (382)
T 1ryi_A           95 ALSGVDIRQHNGGMFKLAFSEEDVLQLRQMDDLDSVSWYSKEEVLEKEPYASGDIFGASFIQDDVHVEPYFVCKAYVKAA  174 (382)
T ss_dssp             HHHCCCCCCBCCCEEEEESSHHHHHHHHTTTTSTTEEEEEHHHHHHHCTTSCTTCCEEEEETTCCBCCHHHHHHHHHHHH
T ss_pred             HhhCCCcCeeecceEEEEeCHHHHHHHHHHhhcCCeEEECHHHHHHhCCCCCcccceEEEeCCCeEEcHHHHHHHHHHHH
Confidence            01122110  00                                        00    00    0123466778888887


Q ss_pred             HcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          181 LARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       181 ~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      . +.|++++++++|+++..+++++ ++.+.               ..+++||.||+|+|.++
T Consensus       175 ~-~~g~~i~~~~~v~~i~~~~~~~-~v~~~---------------~g~~~a~~vV~A~G~~s  219 (382)
T 1ryi_A          175 K-MLGAEIFEHTPVLHVERDGEAL-FIKTP---------------SGDVWANHVVVASGVWS  219 (382)
T ss_dssp             H-HTTCEEETTCCCCEEECSSSSE-EEEET---------------TEEEEEEEEEECCGGGT
T ss_pred             H-HCCCEEEcCCcEEEEEEECCEE-EEEcC---------------CceEEcCEEEECCChhH
Confidence            6 5699999999999998877766 55553               13799999999999764

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=99.33  E-value=1.4e-11  Score=125.01  Aligned_cols=138  Identities=25%  Similarity=0.347  Sum_probs=89.3

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC-CCCCccccC--Cccchhhhcc------chHHHHHHHhCCCccc
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV-SPGGGAWLG--GQLFSAMVVR------KPAHIFLDELGIDYDE  159 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~-~~Gg~~~~~--g~~~~~~~~~------~~~~~~l~~~G~~~~~  159 (356)
                      .+|||||||||++|++||+.|++. |.+|+|||+.. .+|...++.  +.+....+..      .....+.+..++.|..
T Consensus        27 ~~yDVIVIGgG~AGl~AAlaLAr~-G~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f~~  105 (651)
T 3ces_A           27 DPFDVIIIGGGHAGTEAAMAAARM-GQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRI  105 (651)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEEEE
T ss_pred             CcCCEEEECChHHHHHHHHHHHhC-CCCEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhhcccchhh
Confidence            359999999999999999999999 99999999974 344221110  1110000000      0111223333444432


Q ss_pred             cC--------CeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEc
Q 018414          160 QD--------NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEA  231 (356)
Q Consensus       160 ~~--------~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A  231 (356)
                      ..        ......+...+...|.+.+.+..|++++ +++|+++..+++++.+|.+.+              +.+++|
T Consensus       106 l~~~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~-~~~V~~L~~e~g~V~GV~t~d--------------G~~I~A  170 (651)
T 3ces_A          106 LNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIF-QQAVEDLIVENDRVVGAVTQM--------------GLKFRA  170 (651)
T ss_dssp             ESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEESSSBEEEEEETT--------------SEEEEE
T ss_pred             hhcccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEE-EEEEEEEEecCCEEEEEEECC--------------CCEEEC
Confidence            10        0111234456777777777644799995 569999998888888888752              367999


Q ss_pred             CEEEEcCCCCC
Q 018414          232 KVVVSSCGHDG  242 (356)
Q Consensus       232 k~VI~AtGg~~  242 (356)
                      |.||+|||+++
T Consensus       171 d~VVLATGt~s  181 (651)
T 3ces_A          171 KAVVLTVGTFL  181 (651)
T ss_dssp             EEEEECCSTTT
T ss_pred             CEEEEcCCCCc
Confidence            99999999875

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=99.32  E-value=5.2e-12  Score=127.68  Aligned_cols=132  Identities=22%  Similarity=0.232  Sum_probs=85.9

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCC-------------
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI-------------  155 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~-------------  155 (356)
                      ++|||+|||||++|+++|+.|+++ |++|+||||...+..... +..      ......+.|+++|+             
T Consensus        48 ~~~DVvIVGaG~aGL~~A~~La~~-G~~V~VlEr~~~~~~~~r-~~~------l~~~s~~~l~~lGl~~~l~~~~~~~~~  119 (570)
T 3fmw_A           48 LTTDVVVVGGGPVGLMLAGELRAG-GVGALVLEKLVEPVGHDR-AGA------LHIRTVETLDLRGLLDRFLEGTQVAKG  119 (570)
T ss_dssp             ---CEEEECCSHHHHHHHHHHHHT-TCCEEEEBSCSSCCCSSS-CCC------BCHHHHHHHHTTTCHHHHTTSCCBCSB
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC-CCCEEEEcCCCCCCCCce-EEE------ECHHHHHHHHHcCChHHHHhcCcccCC
Confidence            469999999999999999999999 999999999876542111 111      11122223332222             


Q ss_pred             -----------Ccccc---CCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCC
Q 018414          156 -----------DYDEQ---DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQ  221 (356)
Q Consensus       156 -----------~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~  221 (356)
                                 .+...   ..+....+...+.+.|.+.+. +.|++|+++++|+++..+++.+. +.+..       .  
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~-~~gv~i~~~~~v~~l~~~~~~v~-v~~~~-------~--  188 (570)
T 3fmw_A          120 LPFAGIFTQGLDFGLVDTRHPYTGLVPQSRTEALLAEHAR-EAGAEIPRGHEVTRLRQDAEAVE-VTVAG-------P--  188 (570)
T ss_dssp             CCBTTBCTTCCBGGGSCCSCCSBBCCCHHHHHHHHHHHHH-HHTEECCBSCEEEECCBCSSCEE-EEEEE-------T--
T ss_pred             ceeCCcccccccccccCCCCCeeEEeCHHHHHHHHHHHHH-hCCCEEEeCCEEEEEEEcCCeEE-EEEEe-------C--
Confidence                       11110   112223456777788888776 46999999999999988877655 33310       0  


Q ss_pred             CCCCC-eEEEcCEEEEcCCCCC
Q 018414          222 SCMDP-NVMEAKVVVSSCGHDG  242 (356)
Q Consensus       222 ~~g~~-~~i~Ak~VI~AtGg~~  242 (356)
                         ++ .+++||+||.|+|.++
T Consensus       189 ---~G~~~~~a~~vV~ADG~~S  207 (570)
T 3fmw_A          189 ---SGPYPVRARYGVGCDGGRS  207 (570)
T ss_dssp             ---TEEEEEEESEEEECSCSSC
T ss_pred             ---CCcEEEEeCEEEEcCCCCc
Confidence               13 5799999999999775

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=99.32  E-value=1.6e-11  Score=126.85  Aligned_cols=137  Identities=13%  Similarity=0.123  Sum_probs=87.5

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCC-cccc-CCccchhhhcc------------chHHHHHH----
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG-GAWL-GGQLFSAMVVR------------KPAHIFLD----  151 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg-~~~~-~g~~~~~~~~~------------~~~~~~l~----  151 (356)
                      ++||+|||||++|+++|+.|+++ |++|+||||...+|+ .++. +|.+.......            ....+.+.    
T Consensus       264 ~~DVvIIGgGiaGlsaA~~La~~-G~~V~vlEk~~~~g~gaS~~~~G~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~  342 (689)
T 3pvc_A          264 CDDIAIIGGGIVSALTALALQRR-GAVVTLYCADAQPAQGASGNRQGALYPLLNGKNDALETFFTSAFTFARRQYDQLLE  342 (689)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHTT-TCCEEEEESSSSTTCSGGGCSCEEECCCCCSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEECCcHHHHHHHHHHHHC-CCcEEEEeCCCccccccccccCCEEecCCCCCChHHHHHHHHHHHHHHHHHHHhhh
Confidence            58999999999999999999999 999999999866653 2222 22211100000            00111111    


Q ss_pred             -----------------------------HhCCCcc---c--------------c-CCeE----EEechHHHHHHHHHHH
Q 018414          152 -----------------------------ELGIDYD---E--------------Q-DNYV----VIKHAALFTSTIMSKL  180 (356)
Q Consensus       152 -----------------------------~~G~~~~---~--------------~-~~~~----~~~~~~~~~~~l~~~~  180 (356)
                                                   +.|++..   .              . ..+.    ...+...+...|.+.+
T Consensus       343 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~l~~~~gg~~~p~~g~v~p~~l~~aL~~~a  422 (689)
T 3pvc_A          343 QGIAFDHQWCGVSQLAFDDKSRGKIEKMLHTQWPVEFAEAMSREQLSELAGLDCAHDGIHYPAGGWLCPSDLTHALMMLA  422 (689)
T ss_dssp             TTCCCCEECCCEEEECCSHHHHHHHHHHTTSCCCTTTCEEECHHHHHHHHSSCCSSCEEEETTCEEECHHHHHHHHHHHH
T ss_pred             hccccccccCceEEeccCHHHHHHHHHHHhcCCChHHhhccCHHHHHHhcCCCcccceEEecCCeEECHHHHHHHHHHHH
Confidence                                         1222211   0              0 0000    1224567788888887


Q ss_pred             HcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCe-EEEcCEEEEcCCCCCC
Q 018414          181 LARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPN-VMEAKVVVSSCGHDGP  243 (356)
Q Consensus       181 ~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~-~i~Ak~VI~AtGg~~~  243 (356)
                      . +.|++++++++|++|..+++++ .|.+.+              +. +++||.||+|+|+++.
T Consensus       423 ~-~~Gv~i~~~t~V~~l~~~~~~v-~V~t~~--------------G~~~i~Ad~VVlAtG~~s~  470 (689)
T 3pvc_A          423 Q-QNGMTCHYQHELQRLKRIDSQW-QLTFGQ--------------SQAAKHHATVILATGHRLP  470 (689)
T ss_dssp             H-HTTCEEEESCCEEEEEECSSSE-EEEEC---------------CCCCEEESEEEECCGGGTT
T ss_pred             H-hCCCEEEeCCeEeEEEEeCCeE-EEEeCC--------------CcEEEECCEEEECCCcchh
Confidence            6 5699999999999999987764 454431              23 6999999999998764

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=99.32  E-value=5.8e-12  Score=121.11  Aligned_cols=135  Identities=21%  Similarity=0.314  Sum_probs=87.3

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCC--CccccCCccch--------------------h--------
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPG--GGAWLGGQLFS--------------------A--------  139 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~G--g~~~~~g~~~~--------------------~--------  139 (356)
                      ++||+|||||++|+++|+.|+++ |++|+||||....+  +.++....++.                    .        
T Consensus         4 ~~DVvIIGaG~~Gl~~A~~La~~-G~~V~vlE~~~~~~~~gas~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   82 (397)
T 2oln_A            4 SYDVVVVGGGPVGLATAWQVAER-GHRVLVLERHTFFNENGGTSGAERHWRLQYTQEDLFRLTLETLPLWRALESRCERR   82 (397)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSCTTCSSSSCCSSEEEECSCCSSHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCCCCCCCCCCCcCeEEEeccCcchhhhHHHHHHHHHHHHHHHhCcc
Confidence            48999999999999999999999 99999999987554  32221111000                    0        


Q ss_pred             hh--------cc-------c---hHHHHHHHhCCCcccc---------C------Ce-E------EEechHHHHHHHHHH
Q 018414          140 MV--------VR-------K---PAHIFLDELGIDYDEQ---------D------NY-V------VIKHAALFTSTIMSK  179 (356)
Q Consensus       140 ~~--------~~-------~---~~~~~l~~~G~~~~~~---------~------~~-~------~~~~~~~~~~~l~~~  179 (356)
                      .+        ..       .   ...+++.++|+++...         .      .. .      ...+...+...|.+.
T Consensus        83 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~  162 (397)
T 2oln_A           83 LIHEIGSLWFGDTDVVTNEGQISGTAAMMDKLSVRYEWLKATDIERRFGFRGLPRDYEGFLQPDGGTIDVRGTLAALFTL  162 (397)
T ss_dssp             CEECCCEEEEECSSCCBTTBCHHHHHHHHHHTTCCCEEEEHHHHHHHHCCCSCCTTCEEEEETTCEEEEHHHHHHHHHHH
T ss_pred             HHHHCCcEEEcCCCccchhHHHHHHHHHHHHcCCCceecCHHHHHhhCcCccCCCceeEEEcCCCCEEcHHHHHHHHHHH
Confidence            00        00       0   1123444455543110         0      00 0      022346677788887


Q ss_pred             HHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          180 LLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       180 ~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      +. +.|++++++++|++|..+++.+. +.+.               ..+++||.||+|+|+++
T Consensus       163 a~-~~Gv~i~~~~~V~~i~~~~~~v~-v~t~---------------~g~i~a~~VV~A~G~~s  208 (397)
T 2oln_A          163 AQ-AAGATLRAGETVTELVPDADGVS-VTTD---------------RGTYRAGKVVLACGPYT  208 (397)
T ss_dssp             HH-HTTCEEEESCCEEEEEEETTEEE-EEES---------------SCEEEEEEEEECCGGGH
T ss_pred             HH-HcCCEEECCCEEEEEEEcCCeEE-EEEC---------------CCEEEcCEEEEcCCcCh
Confidence            76 56999999999999998877654 4332               24699999999999663

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=99.31  E-value=3.3e-11  Score=116.08  Aligned_cols=129  Identities=19%  Similarity=0.242  Sum_probs=86.1

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCcc-----------
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYD-----------  158 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~-----------  158 (356)
                      .+||+|||||++|+++|+.|+++ |++|+|+||...+... . +..    ........+.|+++|+...           
T Consensus         5 ~~~V~IVGaG~aGl~~A~~L~~~-G~~v~v~E~~~~~~~~-~-~~g----~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~   77 (397)
T 2vou_A            5 TDRIAVVGGSISGLTAALMLRDA-GVDVDVYERSPQPLSG-F-GTG----IVVQPELVHYLLEQGVELDSISVPSSSMEY   77 (397)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSSCCC-C-SCE----EECCHHHHHHHHHTTCCGGGTCBCCCEEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhC-CCCEEEEecCCCCCCc-c-ccc----cccChhHHHHHHHcCCccccccccccceEE
Confidence            58999999999999999999999 9999999998653111 0 111    1112334566777765320           


Q ss_pred             --c-cCCeEE-------EechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeE
Q 018414          159 --E-QDNYVV-------IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNV  228 (356)
Q Consensus       159 --~-~~~~~~-------~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~  228 (356)
                        . .+....       ..+...+.+.|.+.+   .+++++++++|+++..+++.+. +.+.+              +.+
T Consensus        78 ~~~~~g~~~~~~~~~~~~~~~~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~-v~~~~--------------g~~  139 (397)
T 2vou_A           78 VDALTGERVGSVPADWRFTSYDSIYGGLYELF---GPERYHTSKCLVGLSQDSETVQ-MRFSD--------------GTK  139 (397)
T ss_dssp             EETTTCCEEEEEECCCCEEEHHHHHHHHHHHH---CSTTEETTCCEEEEEECSSCEE-EEETT--------------SCE
T ss_pred             EecCCCCccccccCcccccCHHHHHHHHHHhC---CCcEEEcCCEEEEEEecCCEEE-EEECC--------------CCE
Confidence              0 111000       122345556665554   4899999999999998877654 44431              357


Q ss_pred             EEcCEEEEcCCCCCC
Q 018414          229 MEAKVVVSSCGHDGP  243 (356)
Q Consensus       229 i~Ak~VI~AtGg~~~  243 (356)
                      +++|.||+|+|.++.
T Consensus       140 ~~ad~vV~AdG~~S~  154 (397)
T 2vou_A          140 AEANWVIGADGGASV  154 (397)
T ss_dssp             EEESEEEECCCTTCH
T ss_pred             EECCEEEECCCcchh
Confidence            999999999997764

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=99.31  E-value=2e-11  Score=123.75  Aligned_cols=138  Identities=17%  Similarity=0.249  Sum_probs=91.3

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC-CCCCccccC--Ccc-----chhhhc-cchHHHHHHHhCCCccc
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV-SPGGGAWLG--GQL-----FSAMVV-RKPAHIFLDELGIDYDE  159 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~-~~Gg~~~~~--g~~-----~~~~~~-~~~~~~~l~~~G~~~~~  159 (356)
                      .+|||+|||||++|+.||+.|++. |.+|+|||+.. .+|+..++.  +.+     ...+.. ......+++..++.|..
T Consensus        20 ~~yDVIVIGgG~AGl~AAlaLAr~-G~kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~~d~~gi~f~~   98 (641)
T 3cp8_A           20 HMYDVIVVGAGHAGCEAALAVARG-GLHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKAIDATGIQFRM   98 (641)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHHHHHHEEEEEE
T ss_pred             CcCCEEEECccHHHHHHHHHHHHC-CCcEEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHHHHhcCCchhh
Confidence            359999999999999999999999 99999999974 344322111  111     000000 00112334444555432


Q ss_pred             c-----CC---eEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEc
Q 018414          160 Q-----DN---YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEA  231 (356)
Q Consensus       160 ~-----~~---~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A  231 (356)
                      .     ..   .....+...+...+.+.+.+..|++++.+ .|+++..+++++.+|.+.+              +.+++|
T Consensus        99 l~~~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~~~-~V~~L~~d~g~V~GV~t~~--------------G~~i~A  163 (641)
T 3cp8_A           99 LNRSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQD-TVIGVSANSGKFSSVTVRS--------------GRAIQA  163 (641)
T ss_dssp             ECSSSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEEEC-CEEEEEEETTEEEEEEETT--------------SCEEEE
T ss_pred             cccccCccccchhhhcCHHHHHHHHHHHHHhCCCCEEEee-EEEEEEecCCEEEEEEECC--------------CcEEEe
Confidence            1     11   11233456777777777764469999655 8999998889998887752              357999


Q ss_pred             CEEEEcCCCCC
Q 018414          232 KVVVSSCGHDG  242 (356)
Q Consensus       232 k~VI~AtGg~~  242 (356)
                      |.||+|||++.
T Consensus       164 d~VVLATG~~s  174 (641)
T 3cp8_A          164 KAAILACGTFL  174 (641)
T ss_dssp             EEEEECCTTCB
T ss_pred             CEEEECcCCCC
Confidence            99999999874

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=99.30  E-value=2.3e-11  Score=117.23  Aligned_cols=137  Identities=15%  Similarity=0.169  Sum_probs=84.2

Q ss_pred             ccCCcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCC---------C
Q 018414           86 ITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI---------D  156 (356)
Q Consensus        86 ~~~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~---------~  156 (356)
                      ..+.++||+|||||++|+++|+.|++. |++|+|+||...++... .++.+..   ......+.|+++|+         +
T Consensus        22 ~~~~~~dV~IVGaG~aGl~~A~~L~~~-G~~v~v~E~~~~~~~~~-~g~~~~~---~~~~~~~~l~~~gl~~~~~~~~~~   96 (398)
T 2xdo_A           22 NLLSDKNVAIIGGGPVGLTMAKLLQQN-GIDVSVYERDNDREARI-FGGTLDL---HKGSGQEAMKKAGLLQTYYDLALP   96 (398)
T ss_dssp             -CCTTCEEEEECCSHHHHHHHHHHHTT-TCEEEEEECSSSTTCCC-CSCCEEC---CTTTHHHHHHHTTCHHHHHHHCBC
T ss_pred             cccCCCCEEEECCCHHHHHHHHHHHHC-CCCEEEEeCCCCccccc-cCCeeee---CCccHHHHHHhcChHHHHHHhhcc
Confidence            334468999999999999999999999 99999999987553221 1111100   00011222333332         1


Q ss_pred             cc----ccCC--------------eEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeeccc
Q 018414          157 YD----EQDN--------------YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH  218 (356)
Q Consensus       157 ~~----~~~~--------------~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~  218 (356)
                      ..    ....              .....+...+.+.|.+.+.   +++++++++|+++..+++.+. +.+.+       
T Consensus        97 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~i~~~~~~v~-v~~~~-------  165 (398)
T 2xdo_A           97 MGVNIADEKGNILSTKNVKPENRFDNPEINRNDLRAILLNSLE---NDTVIWDRKLVMLEPGKKKWT-LTFEN-------  165 (398)
T ss_dssp             CCEEEECSSSEEEEECCCGGGTTSSCCEECHHHHHHHHHHTSC---TTSEEESCCEEEEEECSSSEE-EEETT-------
T ss_pred             cceEEECCCCCchhhccccccCCCCCceECHHHHHHHHHhhcC---CCEEEECCEEEEEEECCCEEE-EEECC-------
Confidence            00    0000              0012234566666665542   368999999999998776543 44431       


Q ss_pred             CCCCCCCCeEEEcCEEEEcCCCCCCCC
Q 018414          219 DTQSCMDPNVMEAKVVVSSCGHDGPFG  245 (356)
Q Consensus       219 ~~~~~g~~~~i~Ak~VI~AtGg~~~~~  245 (356)
                             +.++++|.||+|+|.++...
T Consensus       166 -------g~~~~ad~vV~AdG~~S~vR  185 (398)
T 2xdo_A          166 -------KPSETADLVILANGGMSKVR  185 (398)
T ss_dssp             -------SCCEEESEEEECSCTTCSCC
T ss_pred             -------CcEEecCEEEECCCcchhHH
Confidence                   24689999999999887644

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=99.29  E-value=1.5e-11  Score=114.05  Aligned_cols=113  Identities=20%  Similarity=0.279  Sum_probs=71.2

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEec
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKH  168 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~  168 (356)
                      ++|||+||||||||++||+.|++. |++|+|+|+.. +||..+..  ++                ++..  .+.    ..
T Consensus         5 ~~yDVvIIGaGpAGlsAA~~lar~-g~~v~lie~~~-~gg~~~~~--~~----------------~~~~--~~~----~~   58 (304)
T 4fk1_A            5 KYIDCAVIGAGPAGLNASLVLGRA-RKQIALFDNNT-NRNRVTQN--SH----------------GFIT--RDG----IK   58 (304)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHT-TCCEEEEECSC-CGGGGSSC--BC----------------CSTT--CTT----BC
T ss_pred             CCcCEEEECCCHHHHHHHHHHHHC-CCCEEEEeCCC-CCCeeeee--cC----------------CccC--CCC----CC
Confidence            469999999999999999999999 99999999974 44322110  00                0000  000    12


Q ss_pred             hHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          169 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       169 ~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      ..++.....+.+.+..++.++.. .+..+...+.....+.+.              +..++++|.||+|||+..
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~--------------~g~~~~a~~liiATGs~p  117 (304)
T 4fk1_A           59 PEEFKEIGLNEVMKYPSVHYYEK-TVVMITKQSTGLFEIVTK--------------DHTKYLAERVLLATGMQE  117 (304)
T ss_dssp             HHHHHHHHHHHHTTSTTEEEEEC-CEEEEEECTTSCEEEEET--------------TCCEEEEEEEEECCCCEE
T ss_pred             HHHHHHHHHHHHHhcCCEEEEee-EEEEeeecCCCcEEEEEC--------------CCCEEEeCEEEEccCCcc
Confidence            34555555666654555666655 555555544333334443              246799999999999754

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=99.29  E-value=5.6e-11  Score=115.03  Aligned_cols=39  Identities=36%  Similarity=0.502  Sum_probs=36.2

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~  130 (356)
                      +||+|||||++||+||++|+++ |++|+|||++..+||.+
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~-G~~V~vlE~~~~~GG~~   39 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSKA-GHEVEVFERLPITGGRF   39 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHT-TCEEEEECSSSSSBTTS
T ss_pred             CcEEEECCCHHHHHHHHHHHhC-CCceEEEeCCCCCCCce
Confidence            4899999999999999999999 99999999998887654

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=99.28  E-value=4.3e-12  Score=119.28  Aligned_cols=130  Identities=22%  Similarity=0.292  Sum_probs=83.5

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~  169 (356)
                      +|||+|||||++|+++|+.|+++ |++|+|+|+...+||.+.. .  +......... ....-.++.+...  ...+...
T Consensus         3 ~~~vvIIG~G~aGl~~A~~l~~~-g~~v~vie~~~~~gg~~~~-~--~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~   75 (357)
T 4a9w_A            3 SVDVVVIGGGQSGLSAGYFLRRS-GLSYVILDAEASPGGAWQH-A--WHSLHLFSPA-GWSSIPGWPMPAS--QGPYPAR   75 (357)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHS-SCCEEEECCSSSSSGGGGG-S--CTTCBCSSCG-GGSCCSSSCCCCC--SSSSCBH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHC-CCCEEEEECCCCCCCcccC-C--CCCcEecCch-hhhhCCCCCCCCC--ccCCCCH
Confidence            48999999999999999999999 9999999999877764321 1  0000000000 0000011111111  0111234


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      ..+...+.+.+. +.|++++++++|+++..+++.+.++.+.               ..++++|+||+|||.++
T Consensus        76 ~~~~~~l~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~v~~~---------------~g~~~~d~vV~AtG~~~  132 (357)
T 4a9w_A           76 AEVLAYLAQYEQ-KYALPVLRPIRVQRVSHFGERLRVVARD---------------GRQWLARAVISATGTWG  132 (357)
T ss_dssp             HHHHHHHHHHHH-HTTCCEECSCCEEEEEEETTEEEEEETT---------------SCEEEEEEEEECCCSGG
T ss_pred             HHHHHHHHHHHH-HcCCEEEcCCEEEEEEECCCcEEEEEeC---------------CCEEEeCEEEECCCCCC
Confidence            566666655554 6799999999999999888765434442               13799999999999755

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=99.28  E-value=3.3e-11  Score=115.12  Aligned_cols=135  Identities=18%  Similarity=0.232  Sum_probs=86.8

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCC--CccccCCccch----------hhhc---------------
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPG--GGAWLGGQLFS----------AMVV---------------  142 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~G--g~~~~~g~~~~----------~~~~---------------  142 (356)
                      ++||+|||||++|+++|++|+++ |++|+|||+....+  +.++....+..          .+..               
T Consensus         3 ~~dvvIIGaG~~Gl~~A~~La~~-G~~V~vie~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~   81 (389)
T 2gf3_A            3 HFDVIVVGAGSMGMAAGYQLAKQ-GVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGEGREYVPLALRSQELWYELEKETHH   81 (389)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSCSSCSSSSSCSSEEEECSSCTTCGGGHHHHHHHHHHHHHHHHHCSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCCCCCCCCCCCCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHhCC
Confidence            48999999999999999999999 99999999987554  33321111100          0000               


Q ss_pred             ---------------cc----hHHHHHHHhCCCcccc---------C-----Ce--E------EEechHHHHHHHHHHHH
Q 018414          143 ---------------RK----PAHIFLDELGIDYDEQ---------D-----NY--V------VIKHAALFTSTIMSKLL  181 (356)
Q Consensus       143 ---------------~~----~~~~~l~~~G~~~~~~---------~-----~~--~------~~~~~~~~~~~l~~~~~  181 (356)
                                     ..    ...+++..+|+++...         +     ..  .      ...+...+...|.+.+.
T Consensus        82 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  161 (389)
T 2gf3_A           82 KIFTKTGVLVFGPKGESAFVAETMEAAKEHSLTVDLLEGDEINKRWPGITVPENYNAIFEPNSGVLFSENCIRAYRELAE  161 (389)
T ss_dssp             CCEECCCEEEEEETTCCHHHHHHHHHHHHTTCCCEEEETHHHHHHSTTCCCCTTEEEEEETTCEEEEHHHHHHHHHHHHH
T ss_pred             cceeecceEEEcCCCchHHHHHHHHHHHHcCCCcEEcCHHHHHHhCCCcccCCCceEEEeCCCcEEeHHHHHHHHHHHHH
Confidence                           00    0112233344432110         0     00  0      12234677888888876


Q ss_pred             cCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          182 ARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       182 ~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                       +.|++++++++|+++..+++.+. +.+.               ..+++||.||+|+|.++
T Consensus       162 -~~Gv~i~~~~~v~~i~~~~~~~~-v~~~---------------~g~~~a~~vV~A~G~~~  205 (389)
T 2gf3_A          162 -ARGAKVLTHTRVEDFDISPDSVK-IETA---------------NGSYTADKLIVSMGAWN  205 (389)
T ss_dssp             -HTTCEEECSCCEEEEEECSSCEE-EEET---------------TEEEEEEEEEECCGGGH
T ss_pred             -HCCCEEEcCcEEEEEEecCCeEE-EEeC---------------CCEEEeCEEEEecCccH
Confidence             56999999999999998766543 4432               24699999999999654

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=99.27  E-value=1.6e-11  Score=114.11  Aligned_cols=112  Identities=19%  Similarity=0.238  Sum_probs=72.4

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEec
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKH  168 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~  168 (356)
                      .+|||+|||||+||++||++|++. |++|+|+||. .+||.+.+.++++...             +        +. ...
T Consensus         5 ~~yDvvIIG~GpAGl~aA~~l~~~-g~~V~liE~~-~~gG~~~~~~~i~~~p-------------~--------~~-~~~   60 (312)
T 4gcm_A            5 IDFDIAIIGAGPAGMTAAVYASRA-NLKTVMIERG-IPGGQMANTEEVENFP-------------G--------FE-MIT   60 (312)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESS-CTTGGGGGCSCBCCST-------------T--------CS-SBC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHC-CCCEEEEecC-CCCCeeecccccCCcC-------------C--------cc-ccc
Confidence            369999999999999999999999 9999999996 5788776665543210             0        00 012


Q ss_pred             hHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          169 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       169 ~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      ..++......... +.+..+..+..+..........  +..               +..++++|+||+|||+..
T Consensus        61 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~---------------~~~~~~~d~liiAtGs~~  116 (312)
T 4gcm_A           61 GPDLSTKMFEHAK-KFGAVYQYGDIKSVEDKGEYKV--INF---------------GNKELTAKAVIIATGAEY  116 (312)
T ss_dssp             HHHHHHHHHHHHH-HTTCEEEECCCCEEEECSSCEE--EEC---------------SSCEEEEEEEEECCCEEE
T ss_pred             hHHHHHHHHHHHh-hccccccceeeeeeeeeeccee--ecc---------------CCeEEEeceeEEcccCcc
Confidence            3344444444443 4456666665444433332221  111               246799999999999643

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=99.26  E-value=4.3e-11  Score=120.39  Aligned_cols=134  Identities=15%  Similarity=0.181  Sum_probs=84.0

Q ss_pred             CCcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhC---------CCcc
Q 018414           88 YADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELG---------IDYD  158 (356)
Q Consensus        88 ~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G---------~~~~  158 (356)
                      +.++||+|||||++|+++|+.|+++ |++|+||||...++.... +..+      .....+.++++|         .++.
T Consensus        24 ~~~~dVlIVGaGpaGl~~A~~La~~-G~~V~vlEr~~~~~~~~~-~~~l------~~~~~~~l~~lGl~~~~~~~~~~~~   95 (549)
T 2r0c_A           24 PIETDVLILGGGPVGMALALDLAHR-QVGHLVVEQTDGTITHPR-VGTI------GPRSMELFRRWGVAKQIRTAGWPGD   95 (549)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSCSCCSSCC-CCEE------CHHHHHHHHHTTCHHHHHTSSCCTT
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHC-CCCEEEEeCCCCCCCCCc-eeee------CHHHHHHHHHcCChHHHHhhcCCcc
Confidence            3468999999999999999999999 999999999876542211 1111      111122222222         1110


Q ss_pred             c----------cC---------------------CeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEE
Q 018414          159 E----------QD---------------------NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGV  207 (356)
Q Consensus       159 ~----------~~---------------------~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv  207 (356)
                      .          .+                     ......+...+.+.|.+.+.+ .   ++++++|+++..+++.+. +
T Consensus        96 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~-~---v~~~~~v~~~~~~~~~v~-v  170 (549)
T 2r0c_A           96 HPLDAAWVTRVGGHEVYRIPLGTADTRATPEHTPEPDAICPQHWLAPLLAEAVGE-R---LRTRSRLDSFEQRDDHVR-A  170 (549)
T ss_dssp             SBCCEEEESSBTSCEEEEECCCBTTTSCCCSSCSSCCEECCHHHHHHHHHHHHGG-G---EECSEEEEEEEECSSCEE-E
T ss_pred             cccceEEeccCCCceeEeecccccccccccCCCCCcccccCHHHHHHHHHHHHHH-h---cccCcEEEEEEEeCCEEE-E
Confidence            0          00                     001223345666777777753 3   899999999998877765 3


Q ss_pred             EEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          208 VTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       208 ~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      .+.+      ..   +|+..+++||+||.|+|+++.
T Consensus       171 ~~~~------~~---~G~~~~i~a~~vVgADG~~S~  197 (549)
T 2r0c_A          171 TITD------LR---TGATRAVHARYLVACDGASSP  197 (549)
T ss_dssp             EEEE------TT---TCCEEEEEEEEEEECCCTTCH
T ss_pred             EEEE------CC---CCCEEEEEeCEEEECCCCCcH
Confidence            3321      00   122367999999999998763

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=99.26  E-value=2.5e-11  Score=115.36  Aligned_cols=135  Identities=13%  Similarity=0.199  Sum_probs=85.5

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc--ccCCccchh----------------------------
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA--WLGGQLFSA----------------------------  139 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~--~~~g~~~~~----------------------------  139 (356)
                      ++||+|||||++|+++|++|+++ |++|+|||+....++..  +....+...                            
T Consensus         2 ~~dvvIIG~Gi~Gl~~A~~La~~-G~~V~vle~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~   80 (372)
T 2uzz_A            2 KYDLIIIGSGSVGAAAGYYATRA-GLNVLMTDAHMPPHQHGSHHGDTRLIRHAYGEGEKYVPLVLRAQMLWDELSRHNED   80 (372)
T ss_dssp             CEEEEESCTTHHHHHHHHHHHHT-TCCEEEECSSCSSSSSSSCCSSEEEECSSCTTCGGGHHHHHHHHHHHHHHHTTCSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCCCCCCCCCCccceeeeccCCCchHHHHHHHHHHHHHHHHHhCCC
Confidence            48999999999999999999999 99999999986553211  111000000                            


Q ss_pred             --hhc----------cc----hHHHHHHHhCCCcccc--------------CC-e---E----EEechHHHHHHHHHHHH
Q 018414          140 --MVV----------RK----PAHIFLDELGIDYDEQ--------------DN-Y---V----VIKHAALFTSTIMSKLL  181 (356)
Q Consensus       140 --~~~----------~~----~~~~~l~~~G~~~~~~--------------~~-~---~----~~~~~~~~~~~l~~~~~  181 (356)
                        .+.          ..    ...+++..+|+++...              .. +   +    ...+...+...|.+.+.
T Consensus        81 ~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~  160 (372)
T 2uzz_A           81 DPIFVRSGVINLGPADSTFLANVAHSAEQWQLNVEKLDAQGIMARWPEIRVPDNYIGLFETDSGFLRSELAIKTWIQLAK  160 (372)
T ss_dssp             SCSEECCCEEEEEETTCHHHHHHHHHHHHTTCCEEEEEHHHHHHHCTTCCCCTTEEEEEESSCEEEEHHHHHHHHHHHHH
T ss_pred             ccceeeeceEEEeCCCcHHHHHHHHHHHHcCCCcEecCHHHHHhhCCCccCCCCceEEEeCCCcEEcHHHHHHHHHHHHH
Confidence              000          00    0112233344432110              00 0   0    12235677788888776


Q ss_pred             cCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          182 ARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       182 ~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                       +.|++++++++|+++..+++.+ .+.+.               ..+++||.||+|+|.++
T Consensus       161 -~~G~~i~~~~~V~~i~~~~~~~-~v~~~---------------~g~~~a~~vV~a~G~~s  204 (372)
T 2uzz_A          161 -EAGCAQLFNCPVTAIRHDDDGV-TIETA---------------DGEYQAKKAIVCAGTWV  204 (372)
T ss_dssp             -HTTCEEECSCCEEEEEECSSSE-EEEES---------------SCEEEEEEEEECCGGGG
T ss_pred             -HCCCEEEcCCEEEEEEEcCCEE-EEEEC---------------CCeEEcCEEEEcCCccH
Confidence             5699999999999999876654 34442               13599999999999765

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=99.26  E-value=5.1e-11  Score=115.24  Aligned_cols=135  Identities=21%  Similarity=0.296  Sum_probs=85.4

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCe-EEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCC---------Cccc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQ-IAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI---------DYDE  159 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~-V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~---------~~~~  159 (356)
                      ++||+|||||++|+++|+.|++. |++ |+|+||...++....  +.     .......+.|+++|+         +...
T Consensus         4 ~~dVvIVGaG~aGl~~A~~L~~~-G~~~v~v~E~~~~~~~~g~--g~-----~l~~~~~~~l~~lg~~~~l~~~~~~~~~   75 (410)
T 3c96_A            4 PIDILIAGAGIGGLSCALALHQA-GIGKVTLLESSSEIRPLGV--GI-----NIQPAAVEALAELGLGPALAATAIPTHE   75 (410)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESSSSCCCCSC--EE-----EECHHHHHHHHHTTCHHHHHHHSEEECE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhC-CCCeEEEEECCCCccccee--EE-----EEChHHHHHHHHCCChHHHHhhCCCcce
Confidence            48999999999999999999999 999 999999876542111  10     011122233333332         1100


Q ss_pred             ------cC--------------Ce-EEEechHHHHHHHHHHHHcCCC-cEEEcCeEEEEEEEeCCeEEEEEEcceeeecc
Q 018414          160 ------QD--------------NY-VVIKHAALFTSTIMSKLLARPN-VKLFNAVAAEDLIVKGGRVGGVVTNWALVSMN  217 (356)
Q Consensus       160 ------~~--------------~~-~~~~~~~~~~~~l~~~~~~~~g-v~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~  217 (356)
                            .+              .+ ....+...+.+.|++.+.+..| ++++++++|+++.. ++.+. +.+.+      
T Consensus        76 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~-~~~v~-v~~~~------  147 (410)
T 3c96_A           76 LRYIDQSGATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEE-RDGRV-LIGAR------  147 (410)
T ss_dssp             EEEECTTSCEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEE-ETTEE-EEEEE------
T ss_pred             EEEEcCCCCEEeeccCCccccCCCCeeeeeHHHHHHHHHHHHHhhCCCcEEEECCEEEEEec-CCccE-EEEec------
Confidence                  00              00 1233456777888888764334 68999999999988 55443 33321      


Q ss_pred             cCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          218 HDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       218 ~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      ..   +|+..+++||.||.|+|..+.
T Consensus       148 ~~---~g~~~~~~ad~vV~AdG~~S~  170 (410)
T 3c96_A          148 DG---HGKPQALGADVLVGADGIHSA  170 (410)
T ss_dssp             ET---TSCEEEEEESEEEECCCTTCH
T ss_pred             CC---CCCceEEecCEEEECCCccch
Confidence            00   012357999999999997764

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=99.26  E-value=4.2e-11  Score=126.20  Aligned_cols=136  Identities=24%  Similarity=0.336  Sum_probs=93.0

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccCCC--CCccccC-Cccch-------------------hhh-----
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSVSP--GGGAWLG-GQLFS-------------------AMV-----  141 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~~~--Gg~~~~~-g~~~~-------------------~~~-----  141 (356)
                      ++||+|||||++|+++|++|+++ |. +|+||||+...  +++++.. |.++.                   .+.     
T Consensus         4 ~~dVvIIGgGi~Gls~A~~La~~-G~~~V~vlE~~~~~~~~gss~~~~G~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~   82 (830)
T 1pj5_A            4 TPRIVIIGAGIVGTNLADELVTR-GWNNITVLDQGPLNMPGGSTSHAPGLVFQTNPSKTMASFAKYTVEKLLSLTEDGVS   82 (830)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHT-TCCCEEEECSSCTTCCCSGGGTCCCEECCCCSCHHHHHHHHHHHHHHHHCEETTEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHhC-CCCcEEEEeCCCCCCCcccceeCCceeecCCCCHHHHHHHHHHHHHHHHHHhhCCC
Confidence            48999999999999999999999 98 99999998753  4444332 22110                   000     


Q ss_pred             ----------ccc--------hHHHHHHHhCCCcccc---------C---------CeE----EEechHHHHHHHHHHHH
Q 018414          142 ----------VRK--------PAHIFLDELGIDYDEQ---------D---------NYV----VIKHAALFTSTIMSKLL  181 (356)
Q Consensus       142 ----------~~~--------~~~~~l~~~G~~~~~~---------~---------~~~----~~~~~~~~~~~l~~~~~  181 (356)
                                ...        ...+++..+|+++...         .         .++    ...+...+...|.+.+.
T Consensus        83 ~~~~~G~l~~~~~~~~~~~l~~~~~~~~~~G~~~~~l~~~e~~~~~p~l~~~~~~gg~~~~~~g~v~p~~l~~~L~~~a~  162 (830)
T 1pj5_A           83 CFNQVGGLEVATTETRLADLKRKLGYAAAWGIEGRLLSPAECQELYPLLDGENILGGLHVPSDGLASAARAVQLLIKRTE  162 (830)
T ss_dssp             SEECCCEEEEESSHHHHHHHHHHHHHHHHHTCCCEEECHHHHHHHCTTSCGGGCCEEEEETTCEEECHHHHHHHHHHHHH
T ss_pred             CeeecCcEEEEeCHHHHHHHHHHHHHHHHcCCCeEEECHHHHHHhCccCCccceEEEEEECCCceEcHHHHHHHHHHHHH
Confidence                      000        0112334455543210         0         000    12256778888888886


Q ss_pred             cCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          182 ARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       182 ~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                       +.|++++++++|++|..+++++.+|.+.               ..+++||.||+|+|.++
T Consensus       163 -~~Gv~i~~~t~V~~i~~~~~~v~~V~t~---------------~G~i~Ad~VV~AaG~~s  207 (830)
T 1pj5_A          163 -SAGVTYRGSTTVTGIEQSGGRVTGVQTA---------------DGVIPADIVVSCAGFWG  207 (830)
T ss_dssp             -HTTCEEECSCCEEEEEEETTEEEEEEET---------------TEEEECSEEEECCGGGH
T ss_pred             -HcCCEEECCceEEEEEEeCCEEEEEEEC---------------CcEEECCEEEECCccch
Confidence             5699999999999999988888878764               24799999999999765

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=99.25  E-value=7.9e-11  Score=117.14  Aligned_cols=141  Identities=13%  Similarity=0.118  Sum_probs=87.6

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchh---hhc-------cc---------------
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSA---MVV-------RK---------------  144 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~---~~~-------~~---------------  144 (356)
                      .+||+|||||++|+++|+.|+++ |++|+||||....+|++.....+...   +..       ..               
T Consensus         3 ~~DVvIIGgGi~G~~~A~~La~~-G~~V~llE~~~~~~gtS~~s~gli~~g~~~~~~~~~~l~~~~~~~~~~l~~~~~~l   81 (501)
T 2qcu_A            3 TKDLIVIGGGINGAGIAADAAGR-GLSVLMLEAQDLACATSSASSKLIHGGLRYLEHYEFRLVSEALAEREVLLKMAPHI   81 (501)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSTTCSGGGSSCCEECCCGGGGGGTCHHHHHHHHHHHHHHHHHCTTT
T ss_pred             cCCEEEECcCHHHHHHHHHHHhC-CCCEEEEECCCCCCCccccccccccccchhhhhchHHHHHHHHHHHHHHHHhCCcc
Confidence            48999999999999999999999 99999999986554443322111100   000       00               


Q ss_pred             -----------------hH----HHHHHHhC-CCc------------cc-cCC----eE---EEechHHHHHHHHHHHHc
Q 018414          145 -----------------PA----HIFLDELG-IDY------------DE-QDN----YV---VIKHAALFTSTIMSKLLA  182 (356)
Q Consensus       145 -----------------~~----~~~l~~~G-~~~------------~~-~~~----~~---~~~~~~~~~~~l~~~~~~  182 (356)
                                       ..    ...++.++ ..+            .. ...    +.   ...+...+...|.+.+. 
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~P~l~~~~~~~~~~~~g~v~~~~l~~~l~~~a~-  160 (501)
T 2qcu_A           82 AFPMRFRLPHRPHLRPAWMIRIGLFMYDHLGKRTSLPGSTGLRFGANSVLKPEIKRGFEYSDCWVDDARLVLANAQMVV-  160 (501)
T ss_dssp             EEEEEEEEECCTTTSCHHHHHHHHHHHHSSSCCSSSCCCEEEECCTTSSBCTTCCEEEEEEEEEECHHHHHHHHHHHHH-
T ss_pred             ccccCeEeccCcccchHHHHHHHHHHHHhcCCcEEECHHHHHHhhcCCCcchhceEEEEeeCCEEcHHHHHHHHHHHHH-
Confidence                             00    00011111 100            00 000    00   12356778888888886 


Q ss_pred             CCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          183 RPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       183 ~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      +.|++++++++|+++..++ ++.+|.+.+      ..   +++..+++||.||+|+|.++
T Consensus       161 ~~Gv~i~~~~~V~~l~~~~-~~~~V~~~d------~~---~G~~~~i~A~~VV~AtG~~s  210 (501)
T 2qcu_A          161 RKGGEVLTRTRATSARREN-GLWIVEAED------ID---TGKKYSWQARGLVNATGPWV  210 (501)
T ss_dssp             HTTCEEECSEEEEEEEEET-TEEEEEEEE------TT---TCCEEEEEESCEEECCGGGH
T ss_pred             HcCCEEEcCcEEEEEEEeC-CEEEEEEEE------CC---CCCEEEEECCEEEECCChhH
Confidence            5699999999999999876 566676631      00   11234799999999999765

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=99.23  E-value=1.6e-11  Score=113.83  Aligned_cols=118  Identities=18%  Similarity=0.250  Sum_probs=75.4

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~  169 (356)
                      .|||+|||||+||++||+.|++. |++|+|+|+.. .|+.+. +|+++.....+..       .++        +.....
T Consensus         4 ~yDvvIIG~GpAGl~AA~~la~~-g~~v~liE~~~-~gg~~~-~G~~~~~~~i~~~-------~g~--------~~~i~~   65 (314)
T 4a5l_A            4 IHDVVIIGSGPAAHTAAIYLGRS-SLKPVMYEGFM-AGGVAA-GGQLTTTTIIENF-------PGF--------PNGIDG   65 (314)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT-TCCCEEECCSS-GGGCCT-TCGGGGSSEECCS-------TTC--------TTCEEH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHC-CCCEEEEecCC-CCCccc-CCCcCChHHhhhc-------cCC--------cccCCH
Confidence            39999999999999999999999 99999999974 444443 4555543322110       011        111234


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      .++...+.+.+. +.++++... .+.......+... +.+.              +..++.+|.||+|||+..
T Consensus        66 ~~l~~~~~~~~~-~~~~~~~~~-~v~~~~~~~~~~~-~~~~--------------~~~~~~~~~liiATG~~~  121 (314)
T 4a5l_A           66 NELMMNMRTQSE-KYGTTIITE-TIDHVDFSTQPFK-LFTE--------------EGKEVLTKSVIIATGATA  121 (314)
T ss_dssp             HHHHHHHHHHHH-HTTCEEECC-CEEEEECSSSSEE-EEET--------------TCCEEEEEEEEECCCEEE
T ss_pred             HHHHHHHHHHHh-hcCcEEEEe-EEEEeecCCCceE-EEEC--------------CCeEEEEeEEEEcccccc
Confidence            556666555554 567887766 4544444433222 2222              247899999999999654

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=99.23  E-value=1.8e-10  Score=116.47  Aligned_cols=65  Identities=18%  Similarity=0.157  Sum_probs=49.5

Q ss_pred             chHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          168 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       168 ~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      +...+...+.+.+. +.|++++++++|+++..+++++.+|.+.+      ..+   ++..+++||.||+|+|.++
T Consensus       186 ~~~~l~~~l~~~a~-~~Ga~i~~~t~V~~l~~~~~~v~gV~~~d------~~t---g~~~~i~A~~VV~AaG~ws  250 (571)
T 2rgh_A          186 NDARLVIDNIKKAA-EDGAYLVSKMKAVGFLYEGDQIVGVKARD------LLT---DEVIEIKAKLVINTSGPWV  250 (571)
T ss_dssp             CHHHHHHHHHHHHH-HTTCEEESSEEEEEEEEETTEEEEEEEEE------TTT---CCEEEEEBSCEEECCGGGH
T ss_pred             chHHHHHHHHHHHH-HcCCeEEeccEEEEEEEeCCEEEEEEEEE------cCC---CCEEEEEcCEEEECCChhH
Confidence            34566777777765 67999999999999999988888887642      001   1235799999999999765

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=99.22  E-value=1.5e-10  Score=116.14  Aligned_cols=130  Identities=18%  Similarity=0.180  Sum_probs=84.3

Q ss_pred             cccEEEECCCHHHHHHHHHhh-cCCCCeEEEEeccCCCCCccccC---Cc---cchhhhccchHHHHHHHhCCCccccCC
Q 018414           90 DTDVVVVGAGSAGLSCAYELS-KNPNIQIAIIEQSVSPGGGAWLG---GQ---LFSAMVVRKPAHIFLDELGIDYDEQDN  162 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La-~~~G~~V~llEk~~~~Gg~~~~~---g~---~~~~~~~~~~~~~~l~~~G~~~~~~~~  162 (356)
                      ++||+|||||++|+++|+.|+ +. |++|+|+|+...+||.+...   ++   .....+......+....+++.    ..
T Consensus         8 ~~dVvIIGaG~aGl~aA~~L~~~~-G~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~----~~   82 (540)
T 3gwf_A            8 TVDAVVIGAGFGGIYAVHKLHHEL-GLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWK----TT   82 (540)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTT-CCCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCS----BS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcC-CCCEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCc----cc
Confidence            589999999999999999999 77 99999999998888754321   11   111111111011111222211    11


Q ss_pred             eEEEechHHHHHHHHHHHHcCCCc--EEEcCeEEEEEEEeCC-eEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCC
Q 018414          163 YVVIKHAALFTSTIMSKLLARPNV--KLFNAVAAEDLIVKGG-RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG  239 (356)
Q Consensus       163 ~~~~~~~~~~~~~l~~~~~~~~gv--~i~~~~~v~~i~~~~~-~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtG  239 (356)
                         .....++...+.+.+. +.++  +++++++|+++..+++ ..+.|.+.+              +.++++|.||+|+|
T Consensus        83 ---~~~~~ei~~~l~~~~~-~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~--------------G~~i~ad~lV~AtG  144 (540)
T 3gwf_A           83 ---YITQPEILEYLEDVVD-RFDLRRHFKFGTEVTSALYLDDENLWEVTTDH--------------GEVYRAKYVVNAVG  144 (540)
T ss_dssp             ---EEEHHHHHHHHHHHHH-HTTCGGGEEESCCEEEEEEETTTTEEEEEETT--------------SCEEEEEEEEECCC
T ss_pred             ---CCCHHHHHHHHHHHHH-HcCCcceeEeccEEEEEEEeCCCCEEEEEEcC--------------CCEEEeCEEEECCc
Confidence               2234556655555544 5677  8999999999998764 334455532              35789999999999


Q ss_pred             CCC
Q 018414          240 HDG  242 (356)
Q Consensus       240 g~~  242 (356)
                      ..+
T Consensus       145 ~~s  147 (540)
T 3gwf_A          145 LLS  147 (540)
T ss_dssp             SCC
T ss_pred             ccc
Confidence            765

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=99.21  E-value=4e-11  Score=119.21  Aligned_cols=135  Identities=19%  Similarity=0.131  Sum_probs=88.9

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCC-----ccccCCe
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID-----YDEQDNY  163 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~-----~~~~~~~  163 (356)
                      ..+||+|||||++|+++|+.|++. |++|+|||+...+|+....  .      ......+.+..+|+.     |... .+
T Consensus        91 ~~~dVvIVGgG~aGl~aA~~La~~-G~~V~liEk~~~~g~~~~~--~------~~~~~~~~l~~~g~~~~~~~~~~~-~~  160 (497)
T 2bry_A           91 TNTKCLVVGAGPCGLRAAVELALL-GARVVLVEKRIKFSRHNVL--H------LWPFTIHDLRALGAKKFYGRFCTG-TL  160 (497)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCSSCCCCCEE--E------CCHHHHHHHHTTTHHHHCTTTTCT-TC
T ss_pred             CCCCEEEECccHHHHHHHHHHHHC-CCeEEEEEeccccCCCCcc--c------CChhHHHHHHHcCCcccccccccc-cc
Confidence            468999999999999999999999 9999999999776542110  0      111233444444441     1111 11


Q ss_pred             EEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEe--CCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414          164 VVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK--GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       164 ~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~--~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~  241 (356)
                      . ..+...+...|.+.+. +.|++++++++|+++..+  ++....|.+..      ..   +++..+++||+||+|+|+.
T Consensus       161 ~-~~~~~~l~~~L~~~~~-~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~------~~---~g~~~~i~ad~VV~A~G~~  229 (497)
T 2bry_A          161 D-HISIRQLQLLLLKVAL-LLGVEIHWGVKFTGLQPPPRKGSGWRAQLQP------NP---PAQLASYEFDVLISAAGGK  229 (497)
T ss_dssp             C-EEEHHHHHHHHHHHHH-HTTCEEEESCEEEEEECCCSTTCCBEEEEES------CC---CHHHHTCCBSEEEECCCTT
T ss_pred             c-cCCHHHHHHHHHHHHH-hCCCEEEeCCEEEEEEEecCCCCEEEEEEEE------CC---CCCEEEEEcCEEEECCCCC
Confidence            1 1234677777777776 479999999999999874  23334454421      00   0112468999999999988


Q ss_pred             CCC
Q 018414          242 GPF  244 (356)
Q Consensus       242 ~~~  244 (356)
                      +..
T Consensus       230 S~~  232 (497)
T 2bry_A          230 FVP  232 (497)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            754

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=99.21  E-value=1.4e-11  Score=123.63  Aligned_cols=138  Identities=17%  Similarity=0.233  Sum_probs=86.1

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC--------CCCCccccCCccchhhhccchHH-HHHH----HhCCC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV--------SPGGGAWLGGQLFSAMVVRKPAH-IFLD----ELGID  156 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~--------~~Gg~~~~~g~~~~~~~~~~~~~-~~l~----~~G~~  156 (356)
                      +|||+|||+|++|+.+|+++++. |++|+|||+..        ..||+|.+.||++.+.+...... +.+.    .+|+.
T Consensus        42 dYDviVIG~GpaG~~aA~~aa~~-G~kValIE~~~~~~~~~k~~lGGtCln~GCIPsK~L~~aa~~~~~~~~~~~~~Gi~  120 (542)
T 4b1b_A           42 DYDYVVIGGGPGGMASAKEAAAH-GARVLLFDYVKPSSQGTKWGIGGTCVNVGCVPKKLMHYAGHMGSIFKLDSKAYGWK  120 (542)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTT-TCCEEEECCCCCCTTCCCCCSSHHHHHHSHHHHHHHHHHHHHHHHHHHTGGGGTEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccccccccccCCCCCcccccchHHHHHHHHHHHHHHHHHhhhHhcCcc
Confidence            59999999999999999999999 99999999743        47999999999999887665432 2222    24554


Q ss_pred             cccc-CCeEE-EechHHHHHHH---HHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEc
Q 018414          157 YDEQ-DNYVV-IKHAALFTSTI---MSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEA  231 (356)
Q Consensus       157 ~~~~-~~~~~-~~~~~~~~~~l---~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A  231 (356)
                      +... .+|.. ..+.....+.+   +....++.||+++.+..   -..+.+.+.. ....       .   .++..++++
T Consensus       121 ~~~~~~d~~~~~~~~~~~v~~l~~~~~~~l~~~~V~~i~G~a---~f~~~~~v~V-~~~~-------~---~~~~~~i~a  186 (542)
T 4b1b_A          121 FDNLKHDWKKLVTTVQSHIRSLNFSYMTGLRSSKVKYINGLA---KLKDKNTVSY-YLKG-------D---LSKEETVTG  186 (542)
T ss_dssp             EEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEE---EEEETTEEEE-EEC------------CCCEEEEEE
T ss_pred             cCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeE---EEcCCCcceE-eecc-------c---CCceEEEee
Confidence            3221 11110 01111222221   22223467999988742   2234444432 2210       0   113478999


Q ss_pred             CEEEEcCCCCC
Q 018414          232 KVVVSSCGHDG  242 (356)
Q Consensus       232 k~VI~AtGg~~  242 (356)
                      +++|+|||+..
T Consensus       187 ~~iiIATGs~P  197 (542)
T 4b1b_A          187 KYILIATGCRP  197 (542)
T ss_dssp             EEEEECCCEEE
T ss_pred             eeEEeccCCCC
Confidence            99999999654

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=99.21  E-value=2.2e-10  Score=114.60  Aligned_cols=65  Identities=12%  Similarity=0.212  Sum_probs=48.3

Q ss_pred             EEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeC-CeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          165 VIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       165 ~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      ...+...+.+.|.+.+.+..|++++++ +|+++..++ +.+..+.+.+              +.+++||.||+|+|..+.
T Consensus       170 ~~~~r~~l~~~L~~~a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~--------------g~~i~ad~vV~AdG~~S~  234 (526)
T 2pyx_A          170 YHLNAAKFSQLLTEHCTQKLGVTHIRD-HVSQIINNQHGDIEKLITKQ--------------NGEISGQLFIDCTGAKSL  234 (526)
T ss_dssp             EEECHHHHHHHHHHHHHHTSCCEEEEC-CEEEEEECTTSCEEEEEESS--------------SCEEECSEEEECSGGGCC
T ss_pred             EEEcHHHHHHHHHHHHHhcCCCEEEEe-EEEEEEecCCCcEEEEEECC--------------CCEEEcCEEEECCCcchH
Confidence            344667788888888874379999999 699998864 4455665532              245999999999998775


Q ss_pred             C
Q 018414          244 F  244 (356)
Q Consensus       244 ~  244 (356)
                      .
T Consensus       235 ~  235 (526)
T 2pyx_A          235 L  235 (526)
T ss_dssp             C
T ss_pred             H
Confidence            4

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=99.20  E-value=2.6e-11  Score=117.32  Aligned_cols=136  Identities=20%  Similarity=0.272  Sum_probs=80.9

Q ss_pred             cccEEEECCCHHHHHHHHHhhcC-CCCeEEEEeccCCCCCcccc-CC-cc-chhhhcc------chHHHHHH-HhCC---
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWL-GG-QL-FSAMVVR------KPAHIFLD-ELGI---  155 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~-~G~~V~llEk~~~~Gg~~~~-~g-~~-~~~~~~~------~~~~~~l~-~~G~---  155 (356)
                      ++||+|||||++|+++|+.|+++ ||++|+|||+....++.++. ++ .+ .......      ....+.+. ..+.   
T Consensus        36 ~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~~~~~s~~~~g~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  115 (405)
T 3c4n_A           36 AFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNEEGATILAPGVWTAQDIPAGQEAQAEWTREQLLGALGSGKT  115 (405)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCSSCTTSHHHHCCCEECGGGCCTTCHHHHHHHHHHHHTGGGSSCC
T ss_pred             cCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCCCCcchhccCCcceeecccCCchHHHHHHHHHHHHHHHhCCCCC
Confidence            58999999999999999999984 58999999998655444332 23 22 1111100      01111111 1111   


Q ss_pred             -CccccC---------------------------------C----e----EEEechHHHHHHHHHHHHcCCCcEEEcCeE
Q 018414          156 -DYDEQD---------------------------------N----Y----VVIKHAALFTSTIMSKLLARPNVKLFNAVA  193 (356)
Q Consensus       156 -~~~~~~---------------------------------~----~----~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~  193 (356)
                       .+...+                                 .    +    ....+...+...|.+.+. +.|++++++++
T Consensus       116 ~~~~~~g~l~~~~~~~~~g~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~v~~~~l~~~L~~~~~-~~Gv~i~~~~~  194 (405)
T 3c4n_A          116 LEVEDRPLLHLLPAGEGSGLTPTLDALADFPEALALLDPARLPVARVDPRALTYRPGSLALLAAQQAI-GQGAGLLLNTR  194 (405)
T ss_dssp             CCEEECCEEEEESSCCSSSCEEHHHHTTTCHHHHTTSCTTTSCEEEEETTCEEECHHHHHHHHHHHHH-TTTCEEECSCE
T ss_pred             CcEEeeCeEEehhhHhHCCCCCHHHHHHhCCCccccccCCcceEEEEcCCCEEEcHHHHHHHHHHHHH-HCCCEEEcCCE
Confidence             111100                                 0    0    012244667888888876 67999999999


Q ss_pred             EE---------EEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          194 AE---------DLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       194 v~---------~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      |+         ++..+++++ +|.+.               ..+++||.||+|+|.++
T Consensus       195 v~~~~g~~~~~~i~~~~~~v-~v~~~---------------~g~i~a~~VV~A~G~~s  236 (405)
T 3c4n_A          195 AELVPGGVRLHRLTVTNTHQ-IVVHE---------------TRQIRAGVIIVAAGAAG  236 (405)
T ss_dssp             EEEETTEEEEECBCC--------CBC---------------CEEEEEEEEEECCGGGH
T ss_pred             EEeccccccccceEeeCCeE-EEEEC---------------CcEEECCEEEECCCccH
Confidence            99         887666655 44332               24799999999999654

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=99.20  E-value=1.1e-10  Score=114.33  Aligned_cols=140  Identities=19%  Similarity=0.104  Sum_probs=84.4

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCC--eEEEEeccCCCCCccccCCccc---------------------------hhh
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQSVSPGGGAWLGGQLF---------------------------SAM  140 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~--~V~llEk~~~~Gg~~~~~g~~~---------------------------~~~  140 (356)
                      .+||+|||||++|+++|+.|++. |.  +|+|+|+...+||.....++..                           ..+
T Consensus         6 ~~dV~IIGaG~aGl~aA~~L~~~-G~~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~~~   84 (447)
T 2gv8_A            6 IRKIAIIGAGPSGLVTAKALLAE-KAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPL   84 (447)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTT-TCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCC
T ss_pred             CCEEEEECccHHHHHHHHHHHhc-CCCCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccCch
Confidence            58999999999999999999999 99  9999999987776433222100                           000


Q ss_pred             hc--cchHHHHHHHh-CCCccccCCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecc
Q 018414          141 VV--RKPAHIFLDEL-GIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMN  217 (356)
Q Consensus       141 ~~--~~~~~~~l~~~-G~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~  217 (356)
                      ..  .......+..+ ++++...  ...+.+...+.+.+.+.+. +.+..++++++|+.+..+++.+. |.+.+      
T Consensus        85 ~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~-~~~~~i~~~t~V~~v~~~~~~~~-V~~~~------  154 (447)
T 2gv8_A           85 YRDLQTNTPIELMGYCDQSFKPQ--TLQFPHRHTIQEYQRIYAQ-PLLPFIKLATDVLDIEKKDGSWV-VTYKG------  154 (447)
T ss_dssp             CTTCBCSSCHHHHSCTTCCCCTT--CCSSCBHHHHHHHHHHHHG-GGGGGEECSEEEEEEEEETTEEE-EEEEE------
T ss_pred             hhhhccCCCHHHhccCCCCCCCC--CCCCCCHHHHHHHHHHHHH-HhhCeEEeCCEEEEEEeCCCeEE-EEEee------
Confidence            00  00000111111 2222221  1112244556666555554 45778999999999988776543 33321      


Q ss_pred             cCCCCCCC-CeEEEcCEEEEcCCCCCC
Q 018414          218 HDTQSCMD-PNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       218 ~~~~~~g~-~~~i~Ak~VI~AtGg~~~  243 (356)
                      ..   +++ ..++.+|.||+|||+++.
T Consensus       155 ~~---~G~~~~~~~~d~VVvAtG~~s~  178 (447)
T 2gv8_A          155 TK---AGSPISKDIFDAVSICNGHYEV  178 (447)
T ss_dssp             SS---TTCCEEEEEESEEEECCCSSSS
T ss_pred             cC---CCCeeEEEEeCEEEECCCCCCC
Confidence            00   011 237999999999998653

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=99.20  E-value=3.8e-11  Score=120.03  Aligned_cols=137  Identities=17%  Similarity=0.211  Sum_probs=87.1

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC--------CCCCccccCCccchhhhccch----HHHHHHHhCCC
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV--------SPGGGAWLGGQLFSAMVVRKP----AHIFLDELGID  156 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~--------~~Gg~~~~~g~~~~~~~~~~~----~~~~l~~~G~~  156 (356)
                      .+|||+|||||++|+.+|+.|++. |++|+||||.+        .+||.|.+.||++.+.+....    ....+..+|+.
T Consensus        31 ~~~DVvVIGgGpaGl~aA~~la~~-G~~V~liEk~~~~~~~~~~~~GGtc~~~GciPsk~l~~~~~~~~~~~~~~~~g~~  109 (519)
T 3qfa_A           31 YDYDLIIIGGGSGGLAAAKEAAQY-GKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWK  109 (519)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHT-TCCEEEECCCCCCTTCCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTBC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhC-CCeEEEEeccCccccccCCCcccccCCcCccchHHHHHHHHHHHHHHHHHhcCcc
Confidence            469999999999999999999999 99999999954        678888888888877655432    23455667876


Q ss_pred             ccccC--CeEEE-echHHHHHHH---HHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEE
Q 018414          157 YDEQD--NYVVI-KHAALFTSTI---MSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVME  230 (356)
Q Consensus       157 ~~~~~--~~~~~-~~~~~~~~~l---~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~  230 (356)
                      +....  +|... .+...+...+   ++...+..+++++.+. +..+  +.+.+. +...            +++..+++
T Consensus       110 ~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~~i~g~-a~~~--d~~~v~-v~~~------------~g~~~~i~  173 (519)
T 3qfa_A          110 VEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAY-GQFI--GPHRIK-ATNN------------KGKEKIYS  173 (519)
T ss_dssp             CCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSE-EEEE--ETTEEE-EECT------------TCCCCEEE
T ss_pred             cCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEe--eCCEEE-EEcC------------CCCEEEEE
Confidence            54321  11111 1111222211   1222335789998884 3322  333322 2221            12345899


Q ss_pred             cCEEEEcCCCCC
Q 018414          231 AKVVVSSCGHDG  242 (356)
Q Consensus       231 Ak~VI~AtGg~~  242 (356)
                      +|+||+|||+..
T Consensus       174 ~d~lViATGs~p  185 (519)
T 3qfa_A          174 AERFLIATGERP  185 (519)
T ss_dssp             EEEEEECCCEEE
T ss_pred             CCEEEEECCCCc
Confidence            999999999643

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=99.20  E-value=1.9e-10  Score=117.82  Aligned_cols=139  Identities=20%  Similarity=0.230  Sum_probs=86.2

Q ss_pred             cccEEEECCCHHHHHHHHHhhc-CCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCC------------
Q 018414           90 DTDVVVVGAGSAGLSCAYELSK-NPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID------------  156 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~-~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~------------  156 (356)
                      ++||+|||||++||++|+.|++ . |++|+||||...++.... +..      ......+.++++|+.            
T Consensus        32 ~~dVlIVGaGpaGL~~A~~La~~~-G~~V~viEr~~~~~~~g~-a~~------l~~~t~e~l~~lGl~~~~~~~~~~~~~  103 (639)
T 2dkh_A           32 QVDVLIVGCGPAGLTLAAQLAAFP-DIRTCIVEQKEGPMELGQ-ADG------IACRTMEMFEAFEFADSILKEACWIND  103 (639)
T ss_dssp             EEEEEEECCSHHHHHHHHHHTTCT-TSCEEEECSSSSCCSSCS-CCE------ECHHHHHHHHHTTCHHHHHHHSEEECE
T ss_pred             CCcEEEECcCHHHHHHHHHHHHhC-CCCEEEEeCCCCCCCCCc-eee------eCHHHHHHHHHcCcHHHHHHhcccccc
Confidence            5899999999999999999999 9 999999999875542211 101      111122233333221            


Q ss_pred             ---ccc-------------------c--CCeEEEechHHHHHHHHHHHHcCCCc--EEEcCeEEEEEEEeCC---eEEEE
Q 018414          157 ---YDE-------------------Q--DNYVVIKHAALFTSTIMSKLLARPNV--KLFNAVAAEDLIVKGG---RVGGV  207 (356)
Q Consensus       157 ---~~~-------------------~--~~~~~~~~~~~~~~~l~~~~~~~~gv--~i~~~~~v~~i~~~~~---~v~gv  207 (356)
                         +..                   .  .......+...+.+.|.+.+.+ .|+  +++++++|+++..+++   ..+.+
T Consensus       104 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~a~~-~g~~v~v~~~~~v~~l~~~~~~~~~~v~v  182 (639)
T 2dkh_A          104 VTFWKPDPGQPGRIARHGRVQDTEDGLSEFPHVILNQARVHDHYLERMRN-SPSRLEPHYARRVLDVKVDHGAADYPVTV  182 (639)
T ss_dssp             EEEEEECTTSTTCEEEEEEEESSCTTSCSSCEEECCHHHHHHHHHHHHHH-STTCCCCBCSEEEEEEEECTTCSSCCEEE
T ss_pred             eEEECCCCCCCcceEeecccCcccCCCCCCceEeeCHHHHHHHHHHHHHh-CCCCcEEecCCEEEEEEECCCCCcCCEEE
Confidence               000                   0  0112234556777888888874 455  9999999999998752   12234


Q ss_pred             EEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          208 VTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       208 ~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      .+.+      .....+|+..+++||+||.|+|+++.
T Consensus       183 ~~~~------~~~~~~G~~~~i~a~~vVgADG~~S~  212 (639)
T 2dkh_A          183 TLER------CDAAHAGQIETVQARYVVGCDGARSN  212 (639)
T ss_dssp             EEEE------CSGGGTTCEEEEEEEEEEECCCTTCH
T ss_pred             EEEe------ccccCCCCeEEEEeCEEEECCCcchH
Confidence            3321      00000123467999999999997763

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=99.19  E-value=4.8e-11  Score=117.14  Aligned_cols=137  Identities=15%  Similarity=0.160  Sum_probs=83.1

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCC-----CeEEEEeccCCCCCccccCCccchhhhc----------------cchHH
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPN-----IQIAIIEQSVSPGGGAWLGGQLFSAMVV----------------RKPAH  147 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G-----~~V~llEk~~~~Gg~~~~~g~~~~~~~~----------------~~~~~  147 (356)
                      ..|||+|||||++|+++|+.|++. |     .+|+|||+...+|   |..+.++.....                .....
T Consensus        29 ~~~dVvIIGaG~aGl~aA~~L~~~-g~~~~~~~v~liE~~~~~g---~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~  104 (463)
T 3s5w_A           29 VVHDLIGVGFGPSNIALAIALQER-AQAQGALEVLFLDKQGDYR---WHGNTLVSQSELQISFLKDLVSLRNPTSPYSFV  104 (463)
T ss_dssp             CEESEEEECCSHHHHHHHHHHHHH-HHHHCCCCEEEEESCSSCC---SSGGGCCSSCBCSSCTTSSSSTTTCTTCTTSHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhc-ccccCcccEEEEecCCCCC---CcCCCCCCCCcCCcchhhccccccCCCCCCChh
Confidence            358999999999999999999998 8     9999999998766   433322111000                01122


Q ss_pred             HHHHHhCCCcc--ccCCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEe--CCeEEE--EEEcceeeecccCCC
Q 018414          148 IFLDELGIDYD--EQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK--GGRVGG--VVTNWALVSMNHDTQ  221 (356)
Q Consensus       148 ~~l~~~G~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~--~~~v~g--v~~~~~~~~~~~~~~  221 (356)
                      .|+...+..+.  ....+  +.....+...+ +...++.+++++++++|+++..+  +++.+.  |.+.+      .   
T Consensus       105 ~~l~~~~~~~~~~~~~~~--~~~~~~~~~~l-~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~------g---  172 (463)
T 3s5w_A          105 NYLHKHDRLVDFINLGTF--YPCRMEFNDYL-RWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRN------A---  172 (463)
T ss_dssp             HHHHHTTCHHHHHHHCCS--CCBHHHHHHHH-HHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEE------T---
T ss_pred             HhhhhcCceeecccccCC--CCCHHHHHHHH-HHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEec------C---
Confidence            34443332110  00111  11234454444 34444678999999999999876  244432  33321      0   


Q ss_pred             CCCCCeEEEcCEEEEcCCCCC
Q 018414          222 SCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       222 ~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                       .++..++.+|.||+|||+..
T Consensus       173 -~g~~~~~~~d~lVlAtG~~p  192 (463)
T 3s5w_A          173 -DGEELVRTTRALVVSPGGTP  192 (463)
T ss_dssp             -TSCEEEEEESEEEECCCCEE
T ss_pred             -CCceEEEEeCEEEECCCCCC
Confidence             01234899999999999743

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=99.19  E-value=8.7e-11  Score=114.80  Aligned_cols=59  Identities=10%  Similarity=0.038  Sum_probs=46.7

Q ss_pred             chHHHHHHHHHHHHcCCCcEEEcCeEEEEEEE---------------eCCeEEEEEEcceeeecccCCCCCCCCeEE--E
Q 018414          168 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIV---------------KGGRVGGVVTNWALVSMNHDTQSCMDPNVM--E  230 (356)
Q Consensus       168 ~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~---------------~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i--~  230 (356)
                      +...+...|.+.+. +.|++++++++|++|..               +++++.+|.+.+               .++  +
T Consensus       179 ~~~~l~~~L~~~~~-~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~---------------g~i~~~  242 (448)
T 3axb_A          179 DAEKVVDYYYRRAS-GAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSD---------------GTRVEV  242 (448)
T ss_dssp             CHHHHHHHHHHHHH-HTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETT---------------SCEEEE
T ss_pred             cHHHHHHHHHHHHH-hCCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeCC---------------CEEeec
Confidence            45678888888876 56999999999999998               566777776642               257  9


Q ss_pred             cCEEEEcCCCCC
Q 018414          231 AKVVVSSCGHDG  242 (356)
Q Consensus       231 Ak~VI~AtGg~~  242 (356)
                      ||.||+|+|+++
T Consensus       243 Ad~VV~AtG~~s  254 (448)
T 3axb_A          243 GEKLVVAAGVWS  254 (448)
T ss_dssp             EEEEEECCGGGH
T ss_pred             CCEEEECCCcCH
Confidence            999999999664

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=99.19  E-value=8.3e-11  Score=109.53  Aligned_cols=116  Identities=18%  Similarity=0.205  Sum_probs=79.7

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~  169 (356)
                      .+||+|||||++|+++|+.|+++ |++|+|+|+.+.+||..+.  ..+...+                .....++. ...
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~-g~~v~lie~~~~~gG~~~~--~~~~~~~----------------~~~~~~~~-~~~   66 (332)
T 3lzw_A            7 VYDITIIGGGPVGLFTAFYGGMR-QASVKIIESLPQLGGQLSA--LYPEKYI----------------YDVAGFPK-IRA   66 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSCHHHHH--HCTTSEE----------------CCSTTCSS-EEH
T ss_pred             cceEEEECCCHHHHHHHHHHHHC-CCCEEEEEcCCCCCceehh--cCCCceE----------------eccCCCCC-CCH
Confidence            48999999999999999999999 9999999999877754311  0000000                00001110 124


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~  241 (356)
                      .++...+.+.+. +.+++++++++|+++..+++..+.+.+.+               .++.+|+||+|||..
T Consensus        67 ~~~~~~~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~v~~~~---------------g~~~~d~vVlAtG~~  122 (332)
T 3lzw_A           67 QELINNLKEQMA-KFDQTICLEQAVESVEKQADGVFKLVTNE---------------ETHYSKTVIITAGNG  122 (332)
T ss_dssp             HHHHHHHHHHHT-TSCCEEECSCCEEEEEECTTSCEEEEESS---------------EEEEEEEEEECCTTS
T ss_pred             HHHHHHHHHHHH-HhCCcEEccCEEEEEEECCCCcEEEEECC---------------CEEEeCEEEECCCCC
Confidence            566666666664 67999999999999988765233344431               349999999999983

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=99.19  E-value=1.1e-10  Score=110.58  Aligned_cols=118  Identities=20%  Similarity=0.229  Sum_probs=80.9

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~  169 (356)
                      .+||+|||||++|+++|+.|++. |++|+|||+...+||.+...  .+...+               +. ...++. ...
T Consensus        14 ~~dvvIIG~G~aGl~aA~~l~~~-g~~v~lie~~~~~gg~~~~~--~~~~~~---------------~~-~~~~~~-~~~   73 (360)
T 3ab1_A           14 MRDLTIIGGGPTGIFAAFQCGMN-NISCRIIESMPQLGGQLAAL--YPEKHI---------------YD-VAGFPE-VPA   73 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSCHHHHHT--CTTSEE---------------CC-STTCSS-EEH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhC-CCCEEEEecCCCCCCccccc--CCCccc---------------cc-CCCCCC-CCH
Confidence            58999999999999999999999 99999999988776543210  000000               00 001110 134


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      ..+.+.+.+.+. +.+++++++++|+.+..+++....+.+.              +..++++|+||+|+|..+
T Consensus        74 ~~~~~~l~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~v~~~--------------~g~~~~~~~li~AtG~~~  131 (360)
T 3ab1_A           74 IDLVESLWAQAE-RYNPDVVLNETVTKYTKLDDGTFETRTN--------------TGNVYRSRAVLIAAGLGA  131 (360)
T ss_dssp             HHHHHHHHHHHH-TTCCEEECSCCEEEEEECTTSCEEEEET--------------TSCEEEEEEEEECCTTCS
T ss_pred             HHHHHHHHHHHH-HhCCEEEcCCEEEEEEECCCceEEEEEC--------------CCcEEEeeEEEEccCCCc
Confidence            566677777665 6789999999999998865422234442              135799999999999854

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=99.18  E-value=1.5e-10  Score=114.58  Aligned_cols=56  Identities=7%  Similarity=0.040  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~  241 (356)
                      .+.+.|.+.+. +.|++|+++++|++|..+++++.+|.+.+              +.++.||.||.+++..
T Consensus       222 ~l~~aL~~~~~-~~Gg~I~~~~~V~~I~~~~~~~~gV~~~~--------------g~~~~ad~VV~~a~~~  277 (501)
T 4dgk_A          222 ALVQGMIKLFQ-DLGGEVVLNARVSHMETTGNKIEAVHLED--------------GRRFLTQAVASNADVV  277 (501)
T ss_dssp             HHHHHHHHHHH-HTTCEEECSCCEEEEEEETTEEEEEEETT--------------SCEEECSCEEECCC--
T ss_pred             chHHHHHHHHH-HhCCceeeecceeEEEeeCCeEEEEEecC--------------CcEEEcCEEEECCCHH
Confidence            45566666665 67999999999999999999999999863              4789999999988854

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=99.18  E-value=1.2e-10  Score=107.88  Aligned_cols=111  Identities=19%  Similarity=0.230  Sum_probs=76.5

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~  169 (356)
                      .+||+|||||++|+++|+.|+++ |++|+|+|+.  +||...........                     ..+.. ...
T Consensus        15 ~~~vvIIG~G~aGl~aA~~l~~~-g~~v~lie~~--~gg~~~~~~~~~~~---------------------~~~~~-~~~   69 (323)
T 3f8d_A           15 KFDVIIVGLGPAAYGAALYSARY-MLKTLVIGET--PGGQLTEAGIVDDY---------------------LGLIE-IQA   69 (323)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESS--TTGGGGGCCEECCS---------------------TTSTT-EEH
T ss_pred             ccCEEEECccHHHHHHHHHHHHC-CCcEEEEecc--CCCeeccccccccc---------------------CCCCC-CCH
Confidence            58999999999999999999999 9999999998  55543321111000                     00000 234


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      .++...+.+.+. +.|+++++ ++|+++..+++.+. +.+.              +..++.+|.||+|+|...
T Consensus        70 ~~~~~~~~~~~~-~~~v~~~~-~~v~~i~~~~~~~~-v~~~--------------~g~~~~~d~lvlAtG~~~  125 (323)
T 3f8d_A           70 SDMIKVFNKHIE-KYEVPVLL-DIVEKIENRGDEFV-VKTK--------------RKGEFKADSVILGIGVKR  125 (323)
T ss_dssp             HHHHHHHHHHHH-TTTCCEEE-SCEEEEEEC--CEE-EEES--------------SSCEEEEEEEEECCCCEE
T ss_pred             HHHHHHHHHHHH-HcCCEEEE-EEEEEEEecCCEEE-EEEC--------------CCCEEEcCEEEECcCCCC
Confidence            566666666665 67999999 79999987765432 3332              135799999999999764

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=99.18  E-value=5.6e-11  Score=117.78  Aligned_cols=136  Identities=20%  Similarity=0.255  Sum_probs=85.9

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEec--------cCCCCCccccCCccchhhhccch----HHHHHHHhCCCc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQ--------SVSPGGGAWLGGQLFSAMVVRKP----AHIFLDELGIDY  157 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk--------~~~~Gg~~~~~g~~~~~~~~~~~----~~~~l~~~G~~~  157 (356)
                      +|||+|||||++|+++|+.|++. |++|+||||        ...+||.|.+.||++.+.+....    ....+..+|+.+
T Consensus         6 ~~DvvVIG~G~aGl~aA~~la~~-G~~V~liEk~~~~~~~~~~~~GGtc~~~gciPsk~l~~~~~~~~~~~~~~~~g~~~   84 (488)
T 3dgz_A            6 SFDLLVIGGGSGGLACAKEAAQL-GKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQAALLGGMIRDAHHYGWEV   84 (488)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCEEEECCCCCCTTSCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhC-CCeEEEEEecccccccccCCcCCeecccCCcccHHHHHHHHHHHHHHHHHhcCccc
Confidence            59999999999999999999999 999999998        45688888888888877665432    234456678766


Q ss_pred             ccc--CCeEEE-echHHHHHHH---HHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEc
Q 018414          158 DEQ--DNYVVI-KHAALFTSTI---MSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEA  231 (356)
Q Consensus       158 ~~~--~~~~~~-~~~~~~~~~l---~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A  231 (356)
                      ...  .+|... .+...+...+   ++...++.+++++.+. +..+  +...+ .+...            +++..++++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~g~-~~~~--~~~~v-~v~~~------------~g~~~~~~~  148 (488)
T 3dgz_A           85 AQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIK-ASFV--DEHTV-RGVDK------------GGKATLLSA  148 (488)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECCE-EEES--SSSEE-EEECT------------TSCEEEEEE
T ss_pred             CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEc--cCCeE-EEEeC------------CCceEEEEC
Confidence            432  122111 1111222211   2222335689988774 2221  22322 22221            112367999


Q ss_pred             CEEEEcCCCCC
Q 018414          232 KVVVSSCGHDG  242 (356)
Q Consensus       232 k~VI~AtGg~~  242 (356)
                      |+||+|||+..
T Consensus       149 d~lViATGs~p  159 (488)
T 3dgz_A          149 EHIVIATGGRP  159 (488)
T ss_dssp             EEEEECCCEEE
T ss_pred             CEEEEcCCCCC
Confidence            99999999643

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=99.16  E-value=3.9e-10  Score=113.08  Aligned_cols=64  Identities=16%  Similarity=0.191  Sum_probs=48.5

Q ss_pred             EEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeC-CeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          165 VIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       165 ~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      ...+...+...|.+.+. +.|++++++ +|+++..++ +.+.+|.+.+              +.+++||.||+|+|..+.
T Consensus       160 ~~i~~~~l~~~L~~~a~-~~gv~~~~~-~v~~i~~~~~g~~~~v~~~~--------------g~~i~ad~vV~A~G~~s~  223 (538)
T 2aqj_A          160 WHFDAHLVADFLKRWAV-ERGVNRVVD-EVVDVRLNNRGYISNLLTKE--------------GRTLEADLFIDCSGMRGL  223 (538)
T ss_dssp             EEECHHHHHHHHHHHHH-HTTCEEEEC-CEEEEEECTTSCEEEEEETT--------------SCEECCSEEEECCGGGCC
T ss_pred             EEEeHHHHHHHHHHHHH-HCCCEEEEe-eEeEEEEcCCCcEEEEEECC--------------CcEEEeCEEEECCCCchh
Confidence            34456778888888876 479999999 899998864 4556666542              247999999999998775


Q ss_pred             C
Q 018414          244 F  244 (356)
Q Consensus       244 ~  244 (356)
                      .
T Consensus       224 ~  224 (538)
T 2aqj_A          224 L  224 (538)
T ss_dssp             C
T ss_pred             h
Confidence            4

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=99.15  E-value=9.1e-11  Score=116.10  Aligned_cols=136  Identities=20%  Similarity=0.250  Sum_probs=84.2

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC---------CCCCccccCCccchhhhccch----HHHHHHHhCC
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV---------SPGGGAWLGGQLFSAMVVRKP----AHIFLDELGI  155 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~---------~~Gg~~~~~g~~~~~~~~~~~----~~~~l~~~G~  155 (356)
                      .+|||+|||||++|+++|+.|++. |++|+||||..         ..||.|.+.||++.+.+....    ....+..+|+
T Consensus         8 ~~~DvvVIGgG~aGl~aA~~la~~-G~~V~liEk~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~g~   86 (483)
T 3dgh_A            8 YDYDLIVIGGGSAGLACAKEAVLN-GARVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMHQASLLGEAVHEAAAYGW   86 (483)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHT-TCCEEEECCCCCCTTTTCCCCSSCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTB
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC-CCEEEEEEeccccccccccCCcCCeecccCchhhHHHHHHHHHHHHHHHHHhcCc
Confidence            469999999999999999999999 99999999521         378888888888877665432    2345566777


Q ss_pred             CccccC--CeEEE-echHHHHHHH---HHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEE
Q 018414          156 DYDEQD--NYVVI-KHAALFTSTI---MSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVM  229 (356)
Q Consensus       156 ~~~~~~--~~~~~-~~~~~~~~~l---~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i  229 (356)
                      .+....  +|... .....+.+.+   +....+..+++++.+.. .  ..+.+.+. +...+            + ..++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a-~--~~~~~~v~-v~~~~------------g-~~~~  149 (483)
T 3dgh_A           87 NVDDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYINGLG-S--FVDSHTLL-AKLKS------------G-ERTI  149 (483)
T ss_dssp             CCCCCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEE-E--EEETTEEE-EECTT------------C-CEEE
T ss_pred             ccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEE-E--EccCCEEE-EEeCC------------C-eEEE
Confidence            654321  11110 1111122111   11223356899988743 2  12333322 22211            1 2579


Q ss_pred             EcCEEEEcCCCCC
Q 018414          230 EAKVVVSSCGHDG  242 (356)
Q Consensus       230 ~Ak~VI~AtGg~~  242 (356)
                      ++|+||+|||+..
T Consensus       150 ~~d~lviATGs~p  162 (483)
T 3dgh_A          150 TAQTFVIAVGGRP  162 (483)
T ss_dssp             EEEEEEECCCEEE
T ss_pred             EcCEEEEeCCCCc
Confidence            9999999999643

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=99.15  E-value=1.1e-10  Score=117.96  Aligned_cols=56  Identities=20%  Similarity=0.218  Sum_probs=43.4

Q ss_pred             HHHHHcCCCcEEEcCeEEEEEEEe----CCeEEEEEEcceeeecccCCCCCCCCeEEEcC-EEEEcCCCCC
Q 018414          177 MSKLLARPNVKLFNAVAAEDLIVK----GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAK-VVVSSCGHDG  242 (356)
Q Consensus       177 ~~~~~~~~gv~i~~~~~v~~i~~~----~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak-~VI~AtGg~~  242 (356)
                      +..+.++.|++|++++.|++|+++    +++++||.+..      .    +|...+++|+ -||+|+|+++
T Consensus       233 L~p~~~r~NL~V~t~a~V~rIl~d~~~~~~ra~GV~~~~------~----~G~~~~v~A~kEVILsAGa~~  293 (583)
T 3qvp_A          233 LLPNYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGT------H----KGNTHNVYAKHEVLLAAGSAV  293 (583)
T ss_dssp             TTTTTTCTTEEEECSCEEEEEEEECSSSSCEEEEEEEES------S----TTCEEEEEEEEEEEECSCTTT
T ss_pred             HHHhhcCCCcEEEcCCEEEEEEeccCCCCCEEEEEEEEe------c----CCcEEEEEECCEEEEeCCccC
Confidence            333345789999999999999998    67899998742      0    2345778896 6999999886

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=99.15  E-value=2.4e-10  Score=106.98  Aligned_cols=116  Identities=22%  Similarity=0.263  Sum_probs=79.4

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~  169 (356)
                      ++||+|||||++|+++|+.|++. |++|+|+|+...+||.+...  .+...+.                ....++. ...
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~~-g~~v~lie~~~~~gg~~~~~--~~~~~~~----------------~~~~~~~-~~~   64 (335)
T 2zbw_A            5 HTDVLIVGAGPTGLFAGFYVGMR-GLSFRFVDPLPEPGGQLTAL--YPEKYIY----------------DVAGFPK-VYA   64 (335)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSSSSCHHHHHT--CTTSEEC----------------CSTTCSS-EEH
T ss_pred             cCcEEEECCCHHHHHHHHHHHhC-CCCEEEEeCCCCCCCeeecc--CCCceee----------------ccCCCCC-CCH
Confidence            58999999999999999999999 99999999988776533210  0000000                0001111 123


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~  241 (356)
                      ..+...+.+.+. +.+++++++++|+.+..+++.+ .+.+.              +..++++|.||+|||..
T Consensus        65 ~~~~~~l~~~~~-~~~~~~~~~~~v~~i~~~~~~~-~v~~~--------------~g~~~~~~~lv~AtG~~  120 (335)
T 2zbw_A           65 KDLVKGLVEQVA-PFNPVYSLGERAETLEREGDLF-KVTTS--------------QGNAYTAKAVIIAAGVG  120 (335)
T ss_dssp             HHHHHHHHHHHG-GGCCEEEESCCEEEEEEETTEE-EEEET--------------TSCEEEEEEEEECCTTS
T ss_pred             HHHHHHHHHHHH-HcCCEEEeCCEEEEEEECCCEE-EEEEC--------------CCCEEEeCEEEECCCCC
Confidence            566666666664 5689999999999998876633 23332              13578999999999975

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=99.14  E-value=1.5e-10  Score=114.70  Aligned_cols=135  Identities=24%  Similarity=0.381  Sum_probs=82.9

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchH-HHH----HHHhCCCcccc-CCe
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA-HIF----LDELGIDYDEQ-DNY  163 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~-~~~----l~~~G~~~~~~-~~~  163 (356)
                      +|||+|||||++|+++|+.|++. |++|+||||...+||.|++.+|++.+.+..... ...    +..+|+..... .+|
T Consensus        25 ~~dVvVIGgG~aGl~aA~~la~~-G~~V~liEk~~~~GG~~~~~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~  103 (491)
T 3urh_A           25 AYDLIVIGSGPGGYVCAIKAAQL-GMKVAVVEKRSTYGGTCLNVGCIPSKALLHASEMFHQAQHGLEALGVEVANPKLNL  103 (491)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHT-TCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHSSGGGTEECCCCEECH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCCCCccccccchhhHHHHHHHHHHHHHHhhHhhcCcccCCCccCH
Confidence            59999999999999999999999 999999999888999998888887766554322 122    23344432211 011


Q ss_pred             EEE-echHHHHHH---HHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCC
Q 018414          164 VVI-KHAALFTST---IMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG  239 (356)
Q Consensus       164 ~~~-~~~~~~~~~---l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtG  239 (356)
                      ... .+...+...   .++...++.+++++.+....   .+.+.+ .+...            +++..++++|.||+|||
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~---~~~~~~-~v~~~------------~g~~~~~~~d~lViATG  167 (491)
T 3urh_A          104 QKMMAHKDATVKSNVDGVSFLFKKNKIDGFQGTGKV---LGQGKV-SVTNE------------KGEEQVLEAKNVVIATG  167 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEE---CSSSEE-EEECT------------TSCEEEEECSEEEECCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE---ecCCEE-EEEeC------------CCceEEEEeCEEEEccC
Confidence            000 011111111   12223346789998885332   233332 22221            12236799999999999


Q ss_pred             CC
Q 018414          240 HD  241 (356)
Q Consensus       240 g~  241 (356)
                      ..
T Consensus       168 s~  169 (491)
T 3urh_A          168 SD  169 (491)
T ss_dssp             EE
T ss_pred             CC
Confidence            65

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=99.14  E-value=1.5e-10  Score=116.44  Aligned_cols=134  Identities=16%  Similarity=0.171  Sum_probs=81.6

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchH-HHHHHHhCC--CccccCCeEE
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA-HIFLDELGI--DYDEQDNYVV  165 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~-~~~l~~~G~--~~~~~~~~~~  165 (356)
                      .++||+|||||++|+.+|+.|++. |++|+|||++..+||.. ...+++...+..... ..+.-.-..  .+.....   
T Consensus         8 ~~~dVvIIGaG~aGl~aA~~L~~~-g~~v~iiE~~~~~GGtw-~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~---   82 (545)
T 3uox_A            8 PALDAVVIGAGVTGIYQAFLINQA-GMKVLGIEAGEDVGGTW-YWNRYPGCRLDTESYAYGYFALKGIIPEWEWSEN---   82 (545)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSCTHH-HHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBS---
T ss_pred             CCCCEEEECccHHHHHHHHHHHhC-CCCEEEEeCCCCCCCcc-ccCCCCceeecCchhhcccccCcccccCCCcccc---
Confidence            468999999999999999999998 99999999998888753 222222111111100 000000000  0111111   


Q ss_pred             EechHHHHHHHHHHHHcCCCc--EEEcCeEEEEEEEeCC-eEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          166 IKHAALFTSTIMSKLLARPNV--KLFNAVAAEDLIVKGG-RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       166 ~~~~~~~~~~l~~~~~~~~gv--~i~~~~~v~~i~~~~~-~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      .....++...+.+.+. +.++  .++++++|+++..+++ ..+.|.+.+              +.++++|+||+|+|..+
T Consensus        83 ~~~~~ei~~yl~~~~~-~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~--------------G~~~~ad~lV~AtG~~s  147 (545)
T 3uox_A           83 FASQPEMLRYVNRAAD-AMDVRKHYRFNTRVTAARYVENDRLWEVTLDN--------------EEVVTCRFLISATGPLS  147 (545)
T ss_dssp             SCBHHHHHHHHHHHHH-HHTCGGGEECSCCEEEEEEEGGGTEEEEEETT--------------TEEEEEEEEEECCCSCB
T ss_pred             CCCHHHHHHHHHHHHH-HcCCcCcEEECCEEEEEEEeCCCCEEEEEECC--------------CCEEEeCEEEECcCCCC
Confidence            1233455444443333 4455  7889999999988653 334455532              36799999999999654

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=99.14  E-value=3e-10  Score=108.83  Aligned_cols=129  Identities=14%  Similarity=0.039  Sum_probs=76.1

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCC--------------
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID--------------  156 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~--------------  156 (356)
                      .+|+|||||++||++|+.|+++ |++|+|+||.+.+..... +..+    .......+.|+++|+.              
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~-G~~v~v~Er~~~~~~~~~-G~~i----~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~   75 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKH-GIKVTIYERNSAASSILP-GYGI----HINSFGKQALQECLPAENWLAFEEASRYIG   75 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSCSSCSSCC-CCEE----EECHHHHHHHHHHSCHHHHHHHHHHCEEEC
T ss_pred             CEEEEECcCHHHHHHHHHHHhC-CCCEEEEecCCCCCcCCC-ceEE----eeCHHHHHHHHHcCChHHHHHhhhhhcccC
Confidence            3799999999999999999999 999999999865432111 1011    0111122222222220              


Q ss_pred             ----cc-ccCCe------------------EEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEccee
Q 018414          157 ----YD-EQDNY------------------VVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWAL  213 (356)
Q Consensus       157 ----~~-~~~~~------------------~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~  213 (356)
                          +. .....                  ....+...+.+.|    .+..+.+++++++++++...++..+.+...+  
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L----~~~~~~~v~~~~~v~~~~~~~~~~v~v~~~d--  149 (412)
T 4hb9_A           76 GQSRFYNERMRLLAVHGGISPMAGKIISEQRLSISRTELKEIL----NKGLANTIQWNKTFVRYEHIENGGIKIFFAD--  149 (412)
T ss_dssp             CCCEEECTTSCEEEC--------------CEEEEEHHHHHHHH----HTTCTTTEECSCCEEEEEECTTSCEEEEETT--
T ss_pred             cceeEecCCcceecccCCccccccccccccceEeeHHHHHHHH----HhhccceEEEEEEEEeeeEcCCCeEEEEECC--
Confidence                00 00000                  0111223333333    3344567899999999987654323344432  


Q ss_pred             eecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          214 VSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       214 ~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                                  +.+++||+||.|+|..|.
T Consensus       150 ------------G~~~~adlvVgADG~~S~  167 (412)
T 4hb9_A          150 ------------GSHENVDVLVGADGSNSK  167 (412)
T ss_dssp             ------------SCEEEESEEEECCCTTCH
T ss_pred             ------------CCEEEeeEEEECCCCCcc
Confidence                        467899999999998763

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=99.14  E-value=6.2e-10  Score=111.95  Aligned_cols=65  Identities=18%  Similarity=0.195  Sum_probs=49.0

Q ss_pred             EEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeC-CeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          165 VIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       165 ~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      ...+...+.+.|.+.+.+..|++++++ +|+++..++ +.+.+|.+.+              +.+++||.||+|+|..+.
T Consensus       189 ~~~~~~~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~--------------G~~i~ad~vI~A~G~~S~  253 (550)
T 2e4g_A          189 WHFDAHLVADFLRRFATEKLGVRHVED-RVEHVQRDANGNIESVRTAT--------------GRVFDADLFVDCSGFRGL  253 (550)
T ss_dssp             EEECHHHHHHHHHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEETT--------------SCEEECSEEEECCGGGCC
T ss_pred             eEEcHHHHHHHHHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEECC--------------CCEEECCEEEECCCCchh
Confidence            334567788888888764339999999 999998754 5566676642              357999999999998775


Q ss_pred             C
Q 018414          244 F  244 (356)
Q Consensus       244 ~  244 (356)
                      .
T Consensus       254 ~  254 (550)
T 2e4g_A          254 L  254 (550)
T ss_dssp             C
T ss_pred             h
Confidence            4

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=99.12  E-value=6.1e-11  Score=117.34  Aligned_cols=144  Identities=18%  Similarity=0.211  Sum_probs=85.1

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccch----HHHHHHHhCCCcccc-CCeE
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKP----AHIFLDELGIDYDEQ-DNYV  164 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~----~~~~l~~~G~~~~~~-~~~~  164 (356)
                      +|||+|||||++|+++|+.|++. |++|+|||+...+||.+++.++++.+.+....    ..+++..+|+++... .++.
T Consensus         6 ~~dVvIIGaG~aGl~aA~~l~~~-G~~V~liE~~~~~GG~~~~~g~~psk~ll~~~~~~~~~~~~~~~gi~~~~~~~~~~   84 (482)
T 1ojt_A            6 EYDVVVLGGGPGGYSAAFAAADE-GLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYPEPELDID   84 (482)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCCHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCCCCCCceeeecccchHHHHHHHHHHHHHHHHHhCCcccCCCccCHH
Confidence            58999999999999999999999 99999999988888888777776655443321    123344456655321 1111


Q ss_pred             E-EechHH----HHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceee-ecccCCCCCCCCeEEEcCEEEEcC
Q 018414          165 V-IKHAAL----FTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALV-SMNHDTQSCMDPNVMEAKVVVSSC  238 (356)
Q Consensus       165 ~-~~~~~~----~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~-~~~~~~~~~g~~~~i~Ak~VI~At  238 (356)
                      . ......    +...+.+.+ ++.|++++.++.+.   .+++.+. +...++.. .....   +++..++++|+||+||
T Consensus        85 ~~~~~~~~~~~~l~~~~~~~~-~~~gv~~~~g~~~~---~~~~~v~-v~~~~g~~~~~~~~---~g~~~~i~ad~lViAt  156 (482)
T 1ojt_A           85 MLRAYKDGVVSRLTGGLAGMA-KSRKVDVIQGDGQF---LDPHHLE-VSLTAGDAYEQAAP---TGEKKIVAFKNCIIAA  156 (482)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-HHTTCEEEEEEEEE---EETTEEE-EEEEEEEETTEEEE---EEEEEEEEEEEEEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HhCCcEEEeeEEEE---ccCCEEE-EEecCCcccccccc---cCcceEEEcCEEEECC
Confidence            0 001111    112222333 35799999987543   3444433 22211000 00000   0112578999999999


Q ss_pred             CCCC
Q 018414          239 GHDG  242 (356)
Q Consensus       239 Gg~~  242 (356)
                      |+..
T Consensus       157 Gs~p  160 (482)
T 1ojt_A          157 GSRV  160 (482)
T ss_dssp             CEEE
T ss_pred             CCCC
Confidence            9764

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=99.12  E-value=5e-10  Score=108.62  Aligned_cols=40  Identities=33%  Similarity=0.583  Sum_probs=37.9

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccc
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW  131 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~  131 (356)
                      |||+|||||++|+++|+.|++. |++|+|||+...+||.++
T Consensus         2 ~dVvVIGaG~aGl~aA~~L~~~-G~~V~vlE~~~~~GG~~~   41 (431)
T 3k7m_X            2 YDAIVVGGGFSGLKAARDLTNA-GKKVLLLEGGERLGGRAY   41 (431)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHT-TCCEEEECSSSSSBTTCC
T ss_pred             CCEEEECCcHHHHHHHHHHHHc-CCeEEEEecCCCccCeec
Confidence            7999999999999999999999 999999999888888775

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=99.12  E-value=4.2e-10  Score=111.95  Aligned_cols=64  Identities=14%  Similarity=0.142  Sum_probs=49.6

Q ss_pred             EEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEe-CCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          165 VIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       165 ~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      ...+...+...|.+.+. +.|++++++ +|+++..+ ++.+.+|.+.+              +.+++||.||+|+|.++.
T Consensus       168 ~~~~~~~l~~~L~~~a~-~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~--------------g~~~~ad~vV~A~G~~S~  231 (511)
T 2weu_A          168 YHFDADEVARYLSEYAI-ARGVRHVVD-DVQHVGQDERGWISGVHTKQ--------------HGEISGDLFVDCTGFRGL  231 (511)
T ss_dssp             EEECHHHHHHHHHHHHH-HTTCEEEEC-CEEEEEECTTSCEEEEEESS--------------SCEEECSEEEECCGGGCC
T ss_pred             EEEcHHHHHHHHHHHHH-HCCCEEEEC-eEeEEEEcCCCCEEEEEECC--------------CCEEEcCEEEECCCcchH
Confidence            44567788888888887 479999999 99999885 45566666642              247999999999998775


Q ss_pred             C
Q 018414          244 F  244 (356)
Q Consensus       244 ~  244 (356)
                      .
T Consensus       232 ~  232 (511)
T 2weu_A          232 L  232 (511)
T ss_dssp             C
T ss_pred             H
Confidence            4

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=99.12  E-value=6.4e-10  Score=107.71  Aligned_cols=38  Identities=39%  Similarity=0.538  Sum_probs=35.9

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~  130 (356)
                      ||+|||||++||++|++|+++ |++|+|+||+..+||.+
T Consensus         2 dVvVIGaGiaGLsaA~~La~~-G~~V~vlE~~~~~GG~~   39 (421)
T 3nrn_A            2 RAVVVGAGLGGLLAGAFLARN-GHEIIVLEKSAMIGGRF   39 (421)
T ss_dssp             EEEEESCSHHHHHHHHHHHHT-TCEEEEECSSSSSCTTS
T ss_pred             cEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCCCCcee
Confidence            899999999999999999999 99999999998888765

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=99.11  E-value=1.9e-10  Score=107.27  Aligned_cols=117  Identities=11%  Similarity=0.214  Sum_probs=78.0

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC----CCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEE
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV----SPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVV  165 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~----~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~  165 (356)
                      .+||+|||||++|+++|+.|++. |++|+|+|+..    .+||..........                  +   ..++.
T Consensus        22 ~~~vvIIG~G~aGl~aA~~l~~~-g~~v~vie~~~~~~~~~gg~~~~~~~~~~------------------~---~~~~~   79 (338)
T 3itj_A           22 HNKVTIIGSGPAAHTAAIYLARA-EIKPILYEGMMANGIAAGGQLTTTTEIEN------------------F---PGFPD   79 (338)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCCEEECCSSBTTBCTTCGGGGSSEECC------------------S---TTCTT
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC-CCCEEEEecCCCCCCCcCcccccchhhcc------------------c---CCCcc
Confidence            58999999999999999999999 99999999954    44443221110000                  0   00111


Q ss_pred             EechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          166 IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       166 ~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      .....++...+.+.+. +.|+++++++ |+++..+++.+. +.+..      .     .+..++.+|.||+|+|...
T Consensus        80 ~~~~~~~~~~~~~~~~-~~gv~i~~~~-v~~i~~~~~~~~-v~~~~------~-----~~~~~~~~d~vvlAtG~~~  142 (338)
T 3itj_A           80 GLTGSELMDRMREQST-KFGTEIITET-VSKVDLSSKPFK-LWTEF------N-----EDAEPVTTDAIILATGASA  142 (338)
T ss_dssp             CEEHHHHHHHHHHHHH-HTTCEEECSC-EEEEECSSSSEE-EEETT------C-----SSSCCEEEEEEEECCCEEE
T ss_pred             cCCHHHHHHHHHHHHH-HcCCEEEEeE-EEEEEEcCCEEE-EEEEe------c-----CCCcEEEeCEEEECcCCCc
Confidence            1234566666666665 5699999998 988887766543 22210      0     1246789999999999754

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=99.11  E-value=9.1e-11  Score=115.59  Aligned_cols=134  Identities=17%  Similarity=0.196  Sum_probs=82.8

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccch-HHHHHHHhCCCccccCCeEEE-e
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKP-AHIFLDELGIDYDEQDNYVVI-K  167 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~-~~~~l~~~G~~~~~~~~~~~~-~  167 (356)
                      +|||+|||||++|+++|+.|++. |++|+||||...+||.|.+.+|++.+.+.... ..+.+.++.. +....+|... .
T Consensus         4 ~~DVvVIGgG~aGl~aA~~l~~~-G~~V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~-~~~~~~~~~~~~   81 (466)
T 3l8k_A            4 KYDVVVIGAGGAGYHGAFRLAKA-KYNVLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIAN-VKIPLDFSTVQD   81 (466)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCEEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHC-SCCCCCHHHHHH
T ss_pred             cceEEEECCCHHHHHHHHHHHhC-CCeEEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhccc-CCCCcCHHHHHH
Confidence            59999999999999999999999 99999999888999988888888776654432 2222222211 1111111100 0


Q ss_pred             chHHHHH----HHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414          168 HAALFTS----TIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       168 ~~~~~~~----~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~  241 (356)
                      ....+.+    ..+....++.+++++.+ ++..+.  .+.+ .+...+            ++..++.+|+||+|||..
T Consensus        82 ~~~~~~~l~~~~~~~~~~~~~~v~~~~g-~v~~id--~~~~-~V~~~~------------g~~~~~~~d~lviAtG~~  143 (466)
T 3l8k_A           82 RKDYVQELRFKQHKRNMSQYETLTFYKG-YVKIKD--PTHV-IVKTDE------------GKEIEAETRYMIIASGAE  143 (466)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCTTEEEESE-EEEEEE--TTEE-EEEETT------------SCEEEEEEEEEEECCCEE
T ss_pred             HHHhheeccccchHHHHHHhCCCEEEEe-EEEEec--CCeE-EEEcCC------------CcEEEEecCEEEECCCCC
Confidence            1111111    22334445779999888 555543  3332 233321            112339999999999964

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=99.10  E-value=4.6e-10  Score=115.42  Aligned_cols=104  Identities=21%  Similarity=0.302  Sum_probs=66.5

Q ss_pred             cccEEEECCCHHHHHHHHHhhc-----CCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCC--------
Q 018414           90 DTDVVVVGAGSAGLSCAYELSK-----NPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID--------  156 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~-----~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~--------  156 (356)
                      ++||+|||||++||++|+.|++     . |++|+||||...+..... +      ........+.|+++|+.        
T Consensus         8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~-Gi~v~viE~~~~~~~~gr-a------~~l~~~tle~l~~lGl~~~l~~~~~   79 (665)
T 1pn0_A            8 YCDVLIVGAGPAGLMAARVLSEYVRQKP-DLKVRIIDKRSTKVYNGQ-A------DGLQCRTLESLKNLGLADKILSEAN   79 (665)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHST-TCCEEEECSSSSCCCSCS-C------CEECHHHHHHHHTTTCHHHHHTTCB
T ss_pred             CCcEEEECcCHHHHHHHHHHhccccccC-CCCEEEEeCCCCCCCCCc-e------eEEChHHHHHHHHCCCHHHHHHhcc
Confidence            5899999999999999999999     8 999999999864421110 0      01111223333333321        


Q ss_pred             -c------ccc------------------CC-eEEEechHHHHHHHHHHHHcCC--CcEEEcCeEEEEEEEeC
Q 018414          157 -Y------DEQ------------------DN-YVVIKHAALFTSTIMSKLLARP--NVKLFNAVAAEDLIVKG  201 (356)
Q Consensus       157 -~------~~~------------------~~-~~~~~~~~~~~~~l~~~~~~~~--gv~i~~~~~v~~i~~~~  201 (356)
                       .      ...                  .. .....+...+.+.|++.+.+..  +++++++++++++..++
T Consensus        80 ~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~l~q~~le~~L~~~~~~~g~~~v~v~~g~~v~~~~~d~  152 (665)
T 1pn0_A           80 DMSTIALYNPDENGHIRRTDRIPDTLPGISRYHQVVLHQGRIERRILDSIAEISDTRIKVERPLIPEKMEIDS  152 (665)
T ss_dssp             CCCEEEEEEECTTSCEEEEEEEESSCTTSCSSCCEECCHHHHHHHHHHHHHHHHTTSSCEECSEEEEEEEECG
T ss_pred             ccceEEEEeCCCCcceEeecccCcccCCCCCCeeEEeeHHHHHHHHHHHHHhcCCCceEEEeCCEEEEEEecC
Confidence             0      000                  00 1123455677777887776332  38999999999998865

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=99.10  E-value=3.3e-10  Score=105.69  Aligned_cols=114  Identities=19%  Similarity=0.239  Sum_probs=75.6

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~  169 (356)
                      .+||+|||||++|+++|+.|++. |++|+|+|+. .+||.+........                  +   ..++.....
T Consensus         8 ~~dvvIIG~G~aGl~aA~~l~~~-g~~v~lie~~-~~gg~~~~~~~~~~------------------~---~~~~~~~~~   64 (325)
T 2q7v_A            8 DYDVVIIGGGPAGLTAAIYTGRA-QLSTLILEKG-MPGGQIAWSEEVEN------------------F---PGFPEPIAG   64 (325)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESS-CTTGGGGGCSCBCC------------------S---TTCSSCBCH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHc-CCcEEEEeCC-CCCccccccccccc------------------C---CCCCCCCCH
Confidence            58999999999999999999999 9999999998 56654432211100                  0   000001133


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEe--CCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVK--GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~--~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      ..+...+.+.+. +.|+++++ .+|+++..+  ++....+...              +..++++|+||+|||...
T Consensus        65 ~~~~~~l~~~~~-~~gv~~~~-~~v~~i~~~~~~~~~~~v~~~--------------~g~~~~~~~vv~AtG~~~  123 (325)
T 2q7v_A           65 MELAQRMHQQAE-KFGAKVEM-DEVQGVQHDATSHPYPFTVRG--------------YNGEYRAKAVILATGADP  123 (325)
T ss_dssp             HHHHHHHHHHHH-HTTCEEEE-CCEEEEEECTTSSSCCEEEEE--------------SSCEEEEEEEEECCCEEE
T ss_pred             HHHHHHHHHHHH-HcCCEEEe-eeEEEEEeccCCCceEEEEEC--------------CCCEEEeCEEEECcCCCc
Confidence            556666666655 56999987 488888776  4321122222              135799999999999753

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=99.10  E-value=6.8e-10  Score=102.73  Aligned_cols=112  Identities=21%  Similarity=0.307  Sum_probs=77.1

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~  169 (356)
                      |||+|||||++|+++|+.|++. |+ +|+|+|+. .+||.+........                  +   ..++.....
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~-g~~~v~lie~~-~~gg~~~~~~~~~~------------------~---~~~~~~~~~   58 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRG-GVKNAVLFEKG-MPGGQITGSSEIEN------------------Y---PGVKEVVSG   58 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT-TCSSEEEECSS-STTCGGGGCSCBCC------------------S---TTCCSCBCH
T ss_pred             ceEEEECccHHHHHHHHHHHHC-CCCcEEEEcCC-CCCccccccccccc------------------C---CCCcccCCH
Confidence            7999999999999999999999 99 99999996 45554432211100                  0   001111234


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      ..+...+.+.+. +.|+++++ ++|+++..+++.+. +...              +..++++|.||+|||...
T Consensus        59 ~~~~~~l~~~~~-~~~v~~~~-~~v~~i~~~~~~~~-v~~~--------------~g~~~~~~~vv~AtG~~~  114 (311)
T 2q0l_A           59 LDFMQPWQEQCF-RFGLKHEM-TAVQRVSKKDSHFV-ILAE--------------DGKTFEAKSVIIATGGSP  114 (311)
T ss_dssp             HHHHHHHHHHHH-TTSCEEEC-SCEEEEEEETTEEE-EEET--------------TSCEEEEEEEEECCCEEE
T ss_pred             HHHHHHHHHHHH-HcCCEEEE-EEEEEEEEcCCEEE-EEEc--------------CCCEEECCEEEECCCCCC
Confidence            566666666665 67999998 68999988776433 3232              135799999999999654

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=99.08  E-value=7e-10  Score=109.74  Aligned_cols=132  Identities=17%  Similarity=0.207  Sum_probs=82.4

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchH----HHHHHHhCCCcccc-CCe
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA----HIFLDELGIDYDEQ-DNY  163 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~----~~~l~~~G~~~~~~-~~~  163 (356)
                      .+|||+|||||++|+++|+.|++. |++|+|||| ..+||.|.+.+|++.+.+.....    ...+..+|+.+... .+|
T Consensus        25 ~~~DVvVIGgG~aGl~aA~~la~~-G~~V~liEk-~~~GG~~~~~gcip~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~  102 (484)
T 3o0h_A           25 FDFDLFVIGSGSGGVRAARLAGAL-GKRVAIAEE-YRIGGTCVIRGCVPKKLYFYASQYAQEFSKSIGFGWKYADPIFNW  102 (484)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHT-TCCEEEEES-SCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHGGGTBCCCCCEECH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhC-cCEEEEEeC-CCCCCceeccCccccHHHHHHHHHHHHHHHHHhCCcccCCCccCH
Confidence            369999999999999999999999 999999999 57888888888887766554321    22333455543221 011


Q ss_pred             EE-Eech----HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcC
Q 018414          164 VV-IKHA----ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSC  238 (356)
Q Consensus       164 ~~-~~~~----~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~At  238 (356)
                      .. ....    ..+...+...+ ++.+++++.+ .+..+  +...   +.+..             +...+.++.+|+||
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~g-~~~~i--~~~~---v~v~~-------------~~~~~~~d~lviAt  162 (484)
T 3o0h_A          103 EKLVAAKNKEISRLEGLYREGL-QNSNVHIYES-RAVFV--DEHT---LELSV-------------TGERISAEKILIAT  162 (484)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-HHTTCEEEES-CEEEE--ETTE---EEETT-------------TCCEEEEEEEEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HhCCCEEEEe-EEEEe--eCCE---EEEec-------------CCeEEEeCEEEEcc
Confidence            00 0001    12222222333 3579999888 33333  2332   22210             13679999999999


Q ss_pred             CCCC
Q 018414          239 GHDG  242 (356)
Q Consensus       239 Gg~~  242 (356)
                      |...
T Consensus       163 G~~p  166 (484)
T 3o0h_A          163 GAKI  166 (484)
T ss_dssp             CEEE
T ss_pred             CCCc
Confidence            9643

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=99.07  E-value=6.5e-10  Score=104.65  Aligned_cols=130  Identities=13%  Similarity=0.156  Sum_probs=78.4

Q ss_pred             ccEEEECCCHHHHHHHHHhhc---CCCCeEEEEeccCCCCCcccc------CCccchh---hh-ccc-------hHHHHH
Q 018414           91 TDVVVVGAGSAGLSCAYELSK---NPNIQIAIIEQSVSPGGGAWL------GGQLFSA---MV-VRK-------PAHIFL  150 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~---~~G~~V~llEk~~~~Gg~~~~------~g~~~~~---~~-~~~-------~~~~~l  150 (356)
                      +||+|||||++|+++|+.|++   . |++|+|+||...+||....      .+..+..   .+ ...       ...+.+
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~-G~~V~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~   80 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSG-PLYLAVWDKADDSGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRFYDEL   80 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-C-CEEEEEECSSSSSCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHHHHHH
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccC-CceEEEEECCCCCccceeeeecCCCCCceEecCCceEEcCchHHHHHHHHHHHH
Confidence            599999999999999999999   8 9999999999877764211      0001100   00 001       112223


Q ss_pred             HHhCCCcccc---------CC---eEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeeccc
Q 018414          151 DELGIDYDEQ---------DN---YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH  218 (356)
Q Consensus       151 ~~~G~~~~~~---------~~---~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~  218 (356)
                      ...|+.....         ..   |........+.+.|.+.    .|++++++++|++|..+++++. +.+.+       
T Consensus        81 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~----~g~~i~~~~~V~~i~~~~~~~~-v~~~~-------  148 (342)
T 3qj4_A           81 LAYGVLRPLSSPIEGMVMKEGDCNFVAPQGISSIIKHYLKE----SGAEVYFRHRVTQINLRDDKWE-VSKQT-------  148 (342)
T ss_dssp             HHTTSCEECCSCEETCCC--CCEEEECTTCTTHHHHHHHHH----HTCEEESSCCEEEEEECSSSEE-EEESS-------
T ss_pred             HhCCCeecCchhhcceeccCCccceecCCCHHHHHHHHHHh----cCCEEEeCCEEEEEEEcCCEEE-EEECC-------
Confidence            2334321110         00   11111223444444433    3899999999999998877654 44431       


Q ss_pred             CCCCCCCCeEEEcCEEEEcCCC
Q 018414          219 DTQSCMDPNVMEAKVVVSSCGH  240 (356)
Q Consensus       219 ~~~~~g~~~~i~Ak~VI~AtGg  240 (356)
                             +.++++|.||+|+..
T Consensus       149 -------g~~~~ad~vV~A~p~  163 (342)
T 3qj4_A          149 -------GSPEQFDLIVLTMPV  163 (342)
T ss_dssp             -------SCCEEESEEEECSCH
T ss_pred             -------CCEEEcCEEEECCCH
Confidence                   244799999999984

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=99.07  E-value=1.2e-09  Score=101.58  Aligned_cols=111  Identities=23%  Similarity=0.276  Sum_probs=76.2

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~  169 (356)
                      ++||+|||||++|+++|+.|++. |++|+|+|+. .+||.+.....+..                  +   ..+ .....
T Consensus        16 ~~dvvIIG~G~aGl~aA~~l~~~-g~~v~lie~~-~~gg~~~~~~~~~~------------------~---~~~-~~~~~   71 (319)
T 3cty_A           16 DFDVVIVGAGAAGFSAAVYAARS-GFSVAILDKA-VAGGLTAEAPLVEN------------------Y---LGF-KSIVG   71 (319)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESS-STTGGGGGCSCBCC------------------B---TTB-SSBCH
T ss_pred             CCcEEEECcCHHHHHHHHHHHhC-CCcEEEEeCC-CCCccccccchhhh------------------c---CCC-cccCH
Confidence            58999999999999999999999 9999999995 45554332211100                  0   001 01123


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      ..+...+.+.+. +.|+++++ .+++++..+++.+. +.+.               ..++.+|+||+|+|...
T Consensus        72 ~~~~~~~~~~~~-~~~v~~~~-~~v~~i~~~~~~~~-v~~~---------------~~~~~~~~li~AtG~~~  126 (319)
T 3cty_A           72 SELAKLFADHAA-NYAKIREG-VEVRSIKKTQGGFD-IETN---------------DDTYHAKYVIITTGTTH  126 (319)
T ss_dssp             HHHHHHHHHHHH-TTSEEEET-CCEEEEEEETTEEE-EEES---------------SSEEEEEEEEECCCEEE
T ss_pred             HHHHHHHHHHHH-HcCCEEEE-eeEEEEEEeCCEEE-EEEC---------------CCEEEeCEEEECCCCCc
Confidence            455666666665 67999988 58999987766443 3332               25689999999999643

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=99.07  E-value=2.5e-10  Score=106.76  Aligned_cols=113  Identities=15%  Similarity=0.210  Sum_probs=75.3

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEec----cCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEE
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQ----SVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVV  165 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk----~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~  165 (356)
                      .+||+|||||++|+++|+.|++. |++|+|+|+    ....|+.........                     ....++.
T Consensus         8 ~~~vvIIG~G~aGl~~A~~l~~~-g~~v~lie~~~~~~~~~gg~~~~~~~~~---------------------~~~~~~~   65 (333)
T 1vdc_A            8 NTRLCIVGSGPAAHTAAIYAARA-ELKPLLFEGWMANDIAPGGQLTTTTDVE---------------------NFPGFPE   65 (333)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCCEEECCSSBTTBCTTCGGGGCSEEC---------------------CSTTCTT
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC-CCeEEEEeccCccccCCCceeeeccccc---------------------cCCCCcc
Confidence            58999999999999999999999 999999998    334444322111000                     0000100


Q ss_pred             EechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          166 IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       166 ~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      ......+...+.+.+. +.|+++++++ |+++..+++.+. +.++               ..+++++.||+|||...
T Consensus        66 ~~~~~~~~~~l~~~~~-~~gv~~~~~~-v~~i~~~~~~~~-v~~~---------------~~~~~~~~vv~A~G~~~  124 (333)
T 1vdc_A           66 GILGVELTDKFRKQSE-RFGTTIFTET-VTKVDFSSKPFK-LFTD---------------SKAILADAVILAIGAVA  124 (333)
T ss_dssp             CEEHHHHHHHHHHHHH-HTTCEEECCC-CCEEECSSSSEE-EECS---------------SEEEEEEEEEECCCEEE
T ss_pred             CCCHHHHHHHHHHHHH-HCCCEEEEeE-EEEEEEcCCEEE-EEEC---------------CcEEEcCEEEECCCCCc
Confidence            1134566666666665 5689999986 888876655432 2221               36799999999999764

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=99.06  E-value=9.6e-10  Score=110.55  Aligned_cols=130  Identities=18%  Similarity=0.155  Sum_probs=83.3

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccC---Cc---cchhhhccchHHHHHHHhCCCccccCCe
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLG---GQ---LFSAMVVRKPAHIFLDELGIDYDEQDNY  163 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~---g~---~~~~~~~~~~~~~~l~~~G~~~~~~~~~  163 (356)
                      ++||+|||||++|+.+|+.|++. |++|+|||+...+||.+...   |+   .....+...-..+....+.+.    .. 
T Consensus        21 ~~dVvIIGaG~aGl~aA~~L~~~-G~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~----~~-   94 (549)
T 4ap3_A           21 SYDVVVVGAGIAGLYAIHRFRSQ-GLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWS----EK-   94 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCS----SS-
T ss_pred             CCCEEEECchHHHHHHHHHHHhC-CCCEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCc----cC-
Confidence            58999999999999999999998 99999999998888754321   11   111111111011111222211    11 


Q ss_pred             EEEechHHHHHHHHHHHHcCCCc--EEEcCeEEEEEEEeCC-eEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCC
Q 018414          164 VVIKHAALFTSTIMSKLLARPNV--KLFNAVAAEDLIVKGG-RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGH  240 (356)
Q Consensus       164 ~~~~~~~~~~~~l~~~~~~~~gv--~i~~~~~v~~i~~~~~-~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg  240 (356)
                        .....++...+.+.+. +.++  +++++++|+++..+++ ..+.|.+.+              +.++++|+||+|||.
T Consensus        95 --~~~~~ei~~yl~~~~~-~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~--------------G~~i~ad~lV~AtG~  157 (549)
T 4ap3_A           95 --YATQPEILAYLEHVAD-RFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDR--------------GDEVSARFLVVAAGP  157 (549)
T ss_dssp             --SCBHHHHHHHHHHHHH-HTTCGGGEECSCCEEEEEEETTTTEEEEEETT--------------CCEEEEEEEEECCCS
T ss_pred             --CCCHHHHHHHHHHHHH-HcCCCccEEECCEEEEEEEcCCCCEEEEEECC--------------CCEEEeCEEEECcCC
Confidence              1234555555554444 5576  7999999999998764 234455532              357999999999996


Q ss_pred             CC
Q 018414          241 DG  242 (356)
Q Consensus       241 ~~  242 (356)
                      .+
T Consensus       158 ~s  159 (549)
T 4ap3_A          158 LS  159 (549)
T ss_dssp             EE
T ss_pred             CC
Confidence            44

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=99.06  E-value=1.3e-09  Score=99.80  Aligned_cols=110  Identities=18%  Similarity=0.205  Sum_probs=75.0

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      +||+|||||++|+++|+.|++. |++|+|+|+....+ ..+....                  +  +....    .....
T Consensus         3 ~~vvIIG~G~aGl~aA~~l~~~-g~~v~lie~~~~~~-~~~~~~~------------------~--~~~~~----~~~~~   56 (297)
T 3fbs_A            3 FDVIIIGGSYAGLSAALQLGRA-RKNILLVDAGERRN-RFASHSH------------------G--FLGQD----GKAPG   56 (297)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT-TCCEEEEECCCCGG-GGCSCCC------------------S--STTCT----TCCHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhC-CCCEEEEeCCCccc-ccchhhc------------------C--CcCCC----CCCHH
Confidence            8999999999999999999999 99999999975321 1110000                  0  00000    11335


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      ++...+.+.+.+..+++++.. +|+.+..+++.+ .+.+.              +..++.+|.||+|||...
T Consensus        57 ~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~-~v~~~--------------~g~~~~~d~vviAtG~~~  112 (297)
T 3fbs_A           57 EIIAEARRQIERYPTIHWVEG-RVTDAKGSFGEF-IVEID--------------GGRRETAGRLILAMGVTD  112 (297)
T ss_dssp             HHHHHHHHHHTTCTTEEEEES-CEEEEEEETTEE-EEEET--------------TSCEEEEEEEEECCCCEE
T ss_pred             HHHHHHHHHHHhcCCeEEEEe-EEEEEEEcCCeE-EEEEC--------------CCCEEEcCEEEECCCCCC
Confidence            666677777764458888765 899998877653 34443              135799999999999754

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.05  E-value=1.2e-10  Score=114.61  Aligned_cols=135  Identities=18%  Similarity=0.232  Sum_probs=83.7

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccch-HHHH----HHHhCCCcccc-CCe
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKP-AHIF----LDELGIDYDEQ-DNY  163 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~-~~~~----l~~~G~~~~~~-~~~  163 (356)
                      +|||+|||||++|+++|+.|++. |++|+|+|+.+.+||.+++.++++.+.+.... ..+.    +..+|+.+... .++
T Consensus         6 ~~dvvIIGaG~aGl~aA~~l~~~-g~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~   84 (470)
T 1dxl_A            6 ENDVVIIGGGPGGYVAAIKAAQL-GFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEIDL   84 (470)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHH-TCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEEECH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCCccccccCcCccchHHHHHHHHHHHHHHHHHHhcCcccCCCccCH
Confidence            58999999999999999999999 99999999998899988877777665443321 1122    34456543211 011


Q ss_pred             EE-EechHH----HHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcC
Q 018414          164 VV-IKHAAL----FTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSC  238 (356)
Q Consensus       164 ~~-~~~~~~----~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~At  238 (356)
                      .. ..+...    +...+.+.+ ++.|++++.++.+.   .+.+.+. +...            +++..++++|.||+||
T Consensus        85 ~~~~~~~~~~~~~l~~~~~~~~-~~~gv~~~~g~~~~---~~~~~~~-v~~~------------~G~~~~i~~d~lIiAt  147 (470)
T 1dxl_A           85 AAMMGQKDKAVSNLTRGIEGLF-KKNKVTYVKGYGKF---VSPSEIS-VDTI------------EGENTVVKGKHIIIAT  147 (470)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-HHHTCEEEESCEEE---EETTEEE-ECCS------------SSCCEEEECSEEEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HhCCCEEEEeEEEE---ecCCEEE-EEeC------------CCceEEEEcCEEEECC
Confidence            00 001111    112222333 35689999997553   3444322 2111            1122679999999999


Q ss_pred             CCCC
Q 018414          239 GHDG  242 (356)
Q Consensus       239 Gg~~  242 (356)
                      |...
T Consensus       148 Gs~p  151 (470)
T 1dxl_A          148 GSDV  151 (470)
T ss_dssp             CEEE
T ss_pred             CCCC
Confidence            9654

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=99.05  E-value=3.2e-10  Score=111.99  Aligned_cols=132  Identities=17%  Similarity=0.228  Sum_probs=80.3

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchH-HHHH---HHhCCCcccc-CCe
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA-HIFL---DELGIDYDEQ-DNY  163 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~-~~~l---~~~G~~~~~~-~~~  163 (356)
                      .+|||+|||||++|+++|+.|++. |++|+|||+. ..||.|++.+|++.+.+..... .+.+   ..+|+..... ..|
T Consensus        19 ~~~dVvIIGgG~aGl~aA~~la~~-G~~V~liE~~-~~GG~~~~~gc~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~   96 (478)
T 3dk9_A           19 ASYDYLVIGGGSGGLASARRAAEL-GARAAVVESH-KLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNW   96 (478)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHT-TCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTSCCCCCCCCH
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhC-CCeEEEEecC-CCCCcccccCccchHHHHHHHHHHHHHHHHHhcCccCCCCccCH
Confidence            469999999999999999999999 9999999987 6888888888887766554322 1222   2234332211 011


Q ss_pred             EE-EechH----HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcC
Q 018414          164 VV-IKHAA----LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSC  238 (356)
Q Consensus       164 ~~-~~~~~----~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~At  238 (356)
                      .. ..+..    .+...+...+ +..+++++.++ +..+  +.+. ..+..               +..++++|+||+||
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~-~~~gv~~~~g~-~~~~--~~~~-~~v~~---------------~g~~~~~d~lviAt  156 (478)
T 3dk9_A           97 RVIKEKRDAYVSRLNAIYQNNL-TKSHIEIIRGH-AAFT--SDPK-PTIEV---------------SGKKYTAPHILIAT  156 (478)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-HHTTCEEEESC-EEEC--SCSS-CEEEE---------------TTEEEECSCEEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HhCCcEEEEeE-EEEe--eCCe-EEEEE---------------CCEEEEeeEEEEcc
Confidence            10 00111    1222222223 35689998884 2222  2111 11222               13679999999999


Q ss_pred             CCCC
Q 018414          239 GHDG  242 (356)
Q Consensus       239 Gg~~  242 (356)
                      |+..
T Consensus       157 G~~p  160 (478)
T 3dk9_A          157 GGMP  160 (478)
T ss_dssp             CEEE
T ss_pred             CCCC
Confidence            9643

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.05  E-value=9e-10  Score=93.93  Aligned_cols=109  Identities=20%  Similarity=0.230  Sum_probs=74.2

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      |||+|||||++|+.+|..|++. |.+|+|+|+.+..-....    ...    ..        .+++        ......
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~-g~~v~lie~~~~~~~~~~----~~~----~~--------~~~~--------~~~~~~   56 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARA-GLKVLVLDGGRSKVKGVS----RVP----NY--------PGLL--------DEPSGE   56 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT-TCCEEEEECSCCTTTTCS----CCC----CS--------TTCT--------TCCCHH
T ss_pred             CeEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCCCcccCch----hhh----cc--------CCCc--------CCCCHH
Confidence            7999999999999999999999 999999999852111000    000    00        0000        001245


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      .+.+.+.+.+. +.|++++++ +|+++..+++.+ .+.+.              +. ++.+|.||+|+|..+
T Consensus        57 ~~~~~l~~~~~-~~gv~v~~~-~v~~i~~~~~~~-~v~~~--------------~g-~i~ad~vI~A~G~~~  110 (180)
T 2ywl_A           57 ELLRRLEAHAR-RYGAEVRPG-VVKGVRDMGGVF-EVETE--------------EG-VEKAERLLLCTHKDP  110 (180)
T ss_dssp             HHHHHHHHHHH-HTTCEEEEC-CCCEEEECSSSE-EEECS--------------SC-EEEEEEEEECCTTCC
T ss_pred             HHHHHHHHHHH-HcCCEEEeC-EEEEEEEcCCEE-EEEEC--------------CC-EEEECEEEECCCCCC
Confidence            66666666665 579999999 999998766543 23332              12 799999999999664

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=99.05  E-value=9.3e-11  Score=115.51  Aligned_cols=129  Identities=16%  Similarity=0.228  Sum_probs=79.4

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccch-HHH---HHHHhCCCcccc-CCeE
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKP-AHI---FLDELGIDYDEQ-DNYV  164 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~-~~~---~l~~~G~~~~~~-~~~~  164 (356)
                      +|||+|||||++|+++|+.|++. |++|+|+|+.. .||.|.+.++++.+.+.... ..+   .+..+|+. ... .++.
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~~-g~~V~lie~~~-~GG~~~~~g~iP~k~l~~~~~~~~~~~~~~~~g~~-~~~~~~~~   82 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQL-GLKVLAVEAGE-VGGVCLNVGCIPTKALLHAAETLHHLKVAEGFGLK-AKPELDLK   82 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHHHHGGGTEE-CCCEECHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCC-CCCCCCCcChHHHHHHHHHHHHHHHHHhHHhcCCC-CCCCcCHH
Confidence            59999999999999999999999 99999999986 78877777777765544322 112   22234443 100 0010


Q ss_pred             E-EechHHHHHHH---HHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCC
Q 018414          165 V-IKHAALFTSTI---MSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGH  240 (356)
Q Consensus       165 ~-~~~~~~~~~~l---~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg  240 (356)
                      . ..+...+.+.+   +....++.|++++.++.+.   .+...   +.+.               ..++++|+||+|||.
T Consensus        83 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~---~~~~~---v~v~---------------g~~~~~d~lViATGs  141 (464)
T 2eq6_A           83 KLGGWRDQVVKKLTGGVGTLLKGNGVELLRGFARL---VGPKE---VEVG---------------GERYGAKSLILATGS  141 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEE---EETTE---EEET---------------TEEEEEEEEEECCCE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEE---ccCCE---EEEc---------------cEEEEeCEEEEcCCC
Confidence            0 00111222222   2222335799999986442   23332   2221               256899999999996


Q ss_pred             CC
Q 018414          241 DG  242 (356)
Q Consensus       241 ~~  242 (356)
                      ..
T Consensus       142 ~p  143 (464)
T 2eq6_A          142 EP  143 (464)
T ss_dssp             EE
T ss_pred             CC
Confidence            54

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=99.04  E-value=5.2e-10  Score=105.96  Aligned_cols=131  Identities=14%  Similarity=0.187  Sum_probs=78.0

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCC-ccc--cCCe--
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID-YDE--QDNY--  163 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~-~~~--~~~~--  163 (356)
                      ++||+|||||++|+++|+.|++. |. +|+|||+.. +|+.+....... ..+....   ....+|+. +..  ...+  
T Consensus         4 ~~~vvIIGaG~aGl~aA~~l~~~-g~~~v~lie~~~-~Gg~~~~~~~~~-~~~~~~~---~~~~~g~~~~~~~~~~~~~~   77 (369)
T 3d1c_A            4 HHKVAIIGAGAAGIGMAITLKDF-GITDVIILEKGT-VGHSFKHWPKST-RTITPSF---TSNGFGMPDMNAISMDTSPA   77 (369)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCCEEEECSSS-TTHHHHTSCTTC-BCSSCCC---CCGGGTCCCTTCSSTTCCHH
T ss_pred             cCcEEEECcCHHHHHHHHHHHHc-CCCcEEEEecCC-CCCccccCcccc-cccCcch---hcccCCchhhhhcccccccc
Confidence            48999999999999999999999 99 999999987 665432111000 0000000   00011220 000  0000  


Q ss_pred             ----EEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCC
Q 018414          164 ----VVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG  239 (356)
Q Consensus       164 ----~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtG  239 (356)
                          ........+...+.+.+. +.|++++++++|+++..+++.+. +.+.               ..++.+|.||+|+|
T Consensus        78 ~~~~~~~~~~~~~~~~l~~~~~-~~gv~i~~~~~v~~i~~~~~~~~-v~~~---------------~g~~~~d~vVlAtG  140 (369)
T 3d1c_A           78 FTFNEEHISGETYAEYLQVVAN-HYELNIFENTVVTNISADDAYYT-IATT---------------TETYHADYIFVATG  140 (369)
T ss_dssp             HHHCCSSCBHHHHHHHHHHHHH-HTTCEEECSCCEEEEEECSSSEE-EEES---------------SCCEEEEEEEECCC
T ss_pred             ccccccCCCHHHHHHHHHHHHH-HcCCeEEeCCEEEEEEECCCeEE-EEeC---------------CCEEEeCEEEECCC
Confidence                001123445555544444 57999999999999987655432 3332               12588999999999


Q ss_pred             CCCC
Q 018414          240 HDGP  243 (356)
Q Consensus       240 g~~~  243 (356)
                      ++..
T Consensus       141 ~~~~  144 (369)
T 3d1c_A          141 DYNF  144 (369)
T ss_dssp             STTS
T ss_pred             CCCc
Confidence            8753

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=99.03  E-value=1.7e-10  Score=113.63  Aligned_cols=134  Identities=16%  Similarity=0.177  Sum_probs=83.2

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccch-HHHH----HHHhCCCcccc--CC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKP-AHIF----LDELGIDYDEQ--DN  162 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~-~~~~----l~~~G~~~~~~--~~  162 (356)
                      +|||+|||||++|+++|+.|++. |++|+|||+.+.+||.|.+.++++.+.+.... ..++    +..+|+++...  .+
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~-g~~V~lie~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~   80 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQL-GMKTACVEKRGALGGTCLNVGCIPSKALLHATHLYHDAHANFARYGLMGGEGVTMD   80 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEECGGGCEEC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCCcCCcCCCcCcHhHHHHHHHHHHHHHHHHHHHhcCcccCCCCccC
Confidence            48999999999999999999999 99999999998899888777777765544321 1222    44566653111  01


Q ss_pred             eEE-EechHH----HHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEc
Q 018414          163 YVV-IKHAAL----FTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSS  237 (356)
Q Consensus       163 ~~~-~~~~~~----~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~A  237 (356)
                      +.. ..+...    +...+.+.+ ++.|++++.++.+.   .+.+.+. +...+            ++..++++|+||+|
T Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~~~~g~~~~---i~~~~~~-v~~~~------------G~~~~~~~d~lviA  143 (468)
T 2qae_A           81 SAKMQQQKERAVKGLTGGVEYLF-KKNKVTYYKGEGSF---ETAHSIR-VNGLD------------GKQEMLETKKTIIA  143 (468)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-HHHTCEEEEEEEEE---EETTEEE-EEETT------------SCEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HhCCCEEEEEEEEE---eeCCEEE-EEecC------------CceEEEEcCEEEEC
Confidence            100 001111    112222333 35689999886442   3444332 32221            11267999999999


Q ss_pred             CCCC
Q 018414          238 CGHD  241 (356)
Q Consensus       238 tGg~  241 (356)
                      ||..
T Consensus       144 tG~~  147 (468)
T 2qae_A          144 TGSE  147 (468)
T ss_dssp             CCEE
T ss_pred             CCCC
Confidence            9964

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=99.03  E-value=7.5e-09  Score=100.19  Aligned_cols=56  Identities=20%  Similarity=0.179  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          172 FTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       172 ~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      +.+.+.+.+. +.|+++++++.|+++..+++++.++.+.+              +.++.+|.||+|+|...
T Consensus       196 ~~~~l~~~l~-~~GV~i~~~~~v~~i~~~~~~v~~v~l~d--------------G~~i~aD~Vv~a~G~~p  251 (415)
T 3lxd_A          196 LSEFYQAEHR-AHGVDLRTGAAMDCIEGDGTKVTGVRMQD--------------GSVIPADIVIVGIGIVP  251 (415)
T ss_dssp             HHHHHHHHHH-HTTCEEEETCCEEEEEESSSBEEEEEESS--------------SCEEECSEEEECSCCEE
T ss_pred             HHHHHHHHHH-hCCCEEEECCEEEEEEecCCcEEEEEeCC--------------CCEEEcCEEEECCCCcc
Confidence            3344444444 67999999999999998888888887753              36799999999999543

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=99.02  E-value=2.3e-09  Score=107.55  Aligned_cols=130  Identities=19%  Similarity=0.176  Sum_probs=80.7

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhh-------ccchHHHHHHHhCCCccccCC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMV-------VRKPAHIFLDELGIDYDEQDN  162 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~-------~~~~~~~~l~~~G~~~~~~~~  162 (356)
                      ++||+|||||++|+++|+.|++. |++|+|+|+...+||.+. .++++...+       ...-..+.+..+.+.    ..
T Consensus        16 ~~dVvIIGaG~aGl~aA~~L~~~-G~~v~iiE~~~~~GG~w~-~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~----~~   89 (542)
T 1w4x_A           16 EVDVLVVGAGFSGLYALYRLREL-GRSVHVIETAGDVGGVWY-WNRYPGARCDIESIEYCYSFSEEVLQEWNWT----ER   89 (542)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSCTHHH-HCCCTTCBCSSCTTTSSCCSCHHHHHHCCCC----BS
T ss_pred             CCCEEEECccHHHHHHHHHHHhC-CCCEEEEeCCCCCCCccc-ccCCCceeecccccccccccChhhhhccCcc----cc
Confidence            58999999999999999999999 999999999988876542 111111000       000001111122111    01


Q ss_pred             eEEEechHHHHHHHHHHHHcCC--CcEEEcCeEEEEEEEeCC-eEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCC
Q 018414          163 YVVIKHAALFTSTIMSKLLARP--NVKLFNAVAAEDLIVKGG-RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG  239 (356)
Q Consensus       163 ~~~~~~~~~~~~~l~~~~~~~~--gv~i~~~~~v~~i~~~~~-~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtG  239 (356)
                      +   ....++.+.+...+. +.  +.+++++++|+++..+++ ..+.|.+.+              +.+++||+||+|+|
T Consensus        90 ~---~~~~~i~~yl~~~~~-~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~--------------G~~~~ad~vV~AtG  151 (542)
T 1w4x_A           90 Y---ASQPEILRYINFVAD-KFDLRSGITFHTTVTAAAFDEATNTWTVDTNH--------------GDRIRARYLIMASG  151 (542)
T ss_dssp             S---CBHHHHHHHHHHHHH-HTTGGGGEECSCCEEEEEEETTTTEEEEEETT--------------CCEEEEEEEEECCC
T ss_pred             c---CCHHHHHHHHHHHHH-HcCCCceEEcCcEEEEEEEcCCCCeEEEEECC--------------CCEEEeCEEEECcC
Confidence            1   123444444433333 33  467999999999988753 333455432              35799999999999


Q ss_pred             CCCC
Q 018414          240 HDGP  243 (356)
Q Consensus       240 g~~~  243 (356)
                      ..+.
T Consensus       152 ~~s~  155 (542)
T 1w4x_A          152 QLSV  155 (542)
T ss_dssp             SCCC
T ss_pred             CCCC
Confidence            7653

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=99.02  E-value=6.2e-10  Score=109.85  Aligned_cols=132  Identities=18%  Similarity=0.257  Sum_probs=81.6

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccch-HHHHHH----HhCCCccccCCeE
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKP-AHIFLD----ELGIDYDEQDNYV  164 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~-~~~~l~----~~G~~~~~~~~~~  164 (356)
                      +|||+|||||++|+++|+.|++. |++|+|+|+...+||.+.+.++++.+.+.... ..+.+.    .+|+++.  .. .
T Consensus         5 ~~dVvIIGgG~aGl~aA~~l~~~-G~~V~liE~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~gi~~~--~~-~   80 (478)
T 1v59_A            5 SHDVVIIGGGPAGYVAAIKAAQL-GFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVN--GD-I   80 (478)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEEC--SC-E
T ss_pred             cCCEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCcCCccceeccHHHHHHHHHHHHHHHHHHHHHhcCcccC--CC-C
Confidence            58999999999999999999999 99999999988888888777776655443321 122222    2344321  00 1


Q ss_pred             EEec------hH----HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeE------
Q 018414          165 VIKH------AA----LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNV------  228 (356)
Q Consensus       165 ~~~~------~~----~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~------  228 (356)
                      ....      ..    .+...+.+.+. +.|++++.++.+..   +++.+ .+...+            ++..+      
T Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~gv~~~~g~~~~~---~~~~v-~V~~~~------------G~~~~~~~~~~  143 (478)
T 1v59_A           81 KINVANFQKAKDDAVKQLTGGIELLFK-KNKVTYYKGNGSFE---DETKI-RVTPVD------------GLEGTVKEDHI  143 (478)
T ss_dssp             EECHHHHHHHHHHHHHHHHHHHHHHHH-HTTCEEEESEEEES---SSSEE-EEECCT------------TCTTCCSSCEE
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHH-hCCCEEEEEEEEEc---cCCeE-EEEecC------------CCcccccccce
Confidence            1111      01    11122333333 57999999976541   33332 232211            11134      


Q ss_pred             EEcCEEEEcCCCCC
Q 018414          229 MEAKVVVSSCGHDG  242 (356)
Q Consensus       229 i~Ak~VI~AtGg~~  242 (356)
                      +++|+||+|||+..
T Consensus       144 i~~d~lViAtGs~p  157 (478)
T 1v59_A          144 LDVKNIIVATGSEV  157 (478)
T ss_dssp             EEEEEEEECCCEEE
T ss_pred             EEeCEEEECcCCCC
Confidence            99999999999754

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.02  E-value=1.8e-09  Score=105.85  Aligned_cols=133  Identities=21%  Similarity=0.259  Sum_probs=80.8

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccch-HHH---HHHHhCCCcccc-CCeE
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKP-AHI---FLDELGIDYDEQ-DNYV  164 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~-~~~---~l~~~G~~~~~~-~~~~  164 (356)
                      +|||+|||||++|+++|+.|++. |++|+|+|+. ..||.+.+.++++.+.+.... ..+   ++..+|+.+... .++.
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~~-g~~V~lie~~-~~gG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~   80 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQL-GQKVTIVEKG-NLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDFA   80 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHT-TCCEEEEESS-CTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhC-CCeEEEEECC-CCCCcCcCcCchhhHHHHHHHHHHHHHHHHHhcCcccCCCccCHH
Confidence            48999999999999999999999 9999999998 678777666776655443321 111   222334432110 0000


Q ss_pred             E-EechHH----HHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCC
Q 018414          165 V-IKHAAL----FTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG  239 (356)
Q Consensus       165 ~-~~~~~~----~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtG  239 (356)
                      . ..+...    +.+.+.+.+ ++.|++++.++.+.   .+.+.+. +...+            + ..++++|+||+|||
T Consensus        81 ~~~~~~~~~~~~l~~~~~~~~-~~~gv~~~~g~~~~---id~~~v~-V~~~~------------G-~~~i~~d~lViATG  142 (455)
T 1ebd_A           81 KVQEWKASVVKKLTGGVEGLL-KGNKVEIVKGEAYF---VDANTVR-VVNGD------------S-AQTYTFKNAIIATG  142 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-HTTTCEEEESEEEE---EETTEEE-EEETT------------E-EEEEECSEEEECCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HhCCCEEEEEEEEE---ccCCeEE-EEeCC------------C-cEEEEeCEEEEecC
Confidence            0 001111    222233334 46799999997543   3444432 33221            0 15689999999999


Q ss_pred             CCC
Q 018414          240 HDG  242 (356)
Q Consensus       240 g~~  242 (356)
                      +..
T Consensus       143 s~p  145 (455)
T 1ebd_A          143 SRP  145 (455)
T ss_dssp             EEE
T ss_pred             CCC
Confidence            654

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=99.02  E-value=1.8e-10  Score=113.63  Aligned_cols=135  Identities=19%  Similarity=0.213  Sum_probs=82.6

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchH----HH--HHHHhCCCcccc-CC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA----HI--FLDELGIDYDEQ-DN  162 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~----~~--~l~~~G~~~~~~-~~  162 (356)
                      +|||+|||||++|+++|+.|++. |++|+|||+.+.+||.+.+.++++.+.+.....    ..  .+..+|++.... .+
T Consensus         6 ~~dvvIIGgG~aGl~aA~~l~~~-g~~V~liE~~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~   84 (474)
T 1zmd_A            6 DADVTVIGSGPGGYVAAIKAAQL-GFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGTDFASRGIEMSEVRLN   84 (474)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCEEEEECSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHSSHHHHTTEEESCEEEC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCCCcCCcccccCccchHHHHHHHHHHHHhhhhhHhhCccccCCCccC
Confidence            58999999999999999999999 999999999988998887777777655443211    11  334455542110 00


Q ss_pred             eEE-EechHHHHH----HHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEc
Q 018414          163 YVV-IKHAALFTS----TIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSS  237 (356)
Q Consensus       163 ~~~-~~~~~~~~~----~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~A  237 (356)
                      +.. ..+...+..    .+.+.+ ++.|++++.++.+ .+  +.+.+. +...+            +...++++|+||+|
T Consensus        85 ~~~~~~~~~~~~~~l~~~~~~~~-~~~gv~~~~g~~~-~~--~~~~~~-v~~~~------------gg~~~~~~d~lViA  147 (474)
T 1zmd_A           85 LDKMMEQKSTAVKALTGGIAHLF-KQNKVVHVNGYGK-IT--GKNQVT-ATKAD------------GGTQVIDTKNILIA  147 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-HHTTCEEEESEEE-EE--ETTEEE-EECTT------------SCEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HhCCCEEEEEEEE-Ee--cCCEEE-EEecC------------CCcEEEEeCEEEEC
Confidence            000 000111111    222333 3579999998643 22  444332 22211            01257999999999


Q ss_pred             CCCCC
Q 018414          238 CGHDG  242 (356)
Q Consensus       238 tGg~~  242 (356)
                      ||...
T Consensus       148 tGs~p  152 (474)
T 1zmd_A          148 TGSEV  152 (474)
T ss_dssp             CCEEE
T ss_pred             CCCCC
Confidence            99653

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=99.01  E-value=9.9e-10  Score=103.02  Aligned_cols=113  Identities=20%  Similarity=0.252  Sum_probs=73.7

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEec
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKH  168 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~  168 (356)
                      ..+||+|||||++|+++|+.|++. |++|+|+|+. .+||.+.......     .                ...++....
T Consensus        13 ~~~~vvIIG~G~aGl~aA~~l~~~-g~~v~lie~~-~~gg~~~~~~~~~-----~----------------~~~~~~~~~   69 (335)
T 2a87_A           13 PVRDVIVIGSGPAGYTAALYAARA-QLAPLVFEGT-SFGGALMTTTDVE-----N----------------YPGFRNGIT   69 (335)
T ss_dssp             CCEEEEEECCHHHHHHHHHHHHHT-TCCCEEECCS-SCSCGGGSCSCBC-----C----------------STTCTTCBC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhC-CCeEEEEecC-CCCCceeccchhh-----h----------------cCCCCCCCC
Confidence            358999999999999999999999 9999999986 4555432211000     0                000100012


Q ss_pred             hHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEE-EEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          169 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGV-VTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       169 ~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv-~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      ...+...+.+.+. +.|+++++++ ++++.. ++.+. + .+.              +..++.+|+||+|||...
T Consensus        70 ~~~~~~~l~~~~~-~~~v~~~~~~-v~~i~~-~~~~~-v~~~~--------------~g~~~~~d~lviAtG~~~  126 (335)
T 2a87_A           70 GPELMDEMREQAL-RFGADLRMED-VESVSL-HGPLK-SVVTA--------------DGQTHRARAVILAMGAAA  126 (335)
T ss_dssp             HHHHHHHHHHHHH-HTTCEEECCC-EEEEEC-SSSSE-EEEET--------------TSCEEEEEEEEECCCEEE
T ss_pred             HHHHHHHHHHHHH-HcCCEEEEee-EEEEEe-CCcEE-EEEeC--------------CCCEEEeCEEEECCCCCc
Confidence            3455556555554 5699999986 888765 33221 2 232              135799999999999754

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=99.01  E-value=2e-09  Score=99.53  Aligned_cols=112  Identities=19%  Similarity=0.280  Sum_probs=74.3

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      |||+|||||++|+++|+.|++. |++|+|+|+.  .||.+.....+..                  +.   ... .....
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~-g~~v~li~~~--~gG~~~~~~~~~~------------------~~---~~~-~~~~~   56 (310)
T 1fl2_A            2 YDVLIVGSGPAGAAAAIYSARK-GIRTGLMGER--FGGQILDTVDIEN------------------YI---SVP-KTEGQ   56 (310)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTT-TCCEEEECSS--TTGGGGGCCEECC------------------BT---TBS-SEEHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHC-CCcEEEEeCC--CCceecccccccc------------------cc---CcC-CCCHH
Confidence            8999999999999999999999 9999999864  4443321111000                  00   000 01234


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeC--CeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKG--GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~--~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      .+...+.+.+. +.|++++++++|+.+..++  +....+.+.+              ..++++|.||+|||...
T Consensus        57 ~~~~~~~~~~~-~~~v~~~~~~~v~~i~~~~~~~~~~~v~~~~--------------g~~~~~~~lv~AtG~~~  115 (310)
T 1fl2_A           57 KLAGALKVHVD-EYDVDVIDSQSASKLIPAAVEGGLHQIETAS--------------GAVLKARSIIVATGAKW  115 (310)
T ss_dssp             HHHHHHHHHHH-TSCEEEECSCCEEEEECCSSTTCCEEEEETT--------------SCEEEEEEEEECCCEEE
T ss_pred             HHHHHHHHHHH-HcCCeEEccCEEEEEEecccCCceEEEEECC--------------CCEEEeCEEEECcCCCc
Confidence            55556555554 6799999999999987542  2223344431              35789999999999753

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=99.01  E-value=1.2e-09  Score=101.41  Aligned_cols=112  Identities=12%  Similarity=0.155  Sum_probs=74.3

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~  169 (356)
                      .+||+|||||++|+++|+.|++. |++|+|+|+. .+||.+.......                     ....++.....
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~~-g~~v~lie~~-~~gg~~~~~~~~~---------------------~~~~~~~~~~~   61 (320)
T 1trb_A            5 HSKLLILGSGPAGYTAAVYAARA-NLQPVLITGM-EKGGQLTTTTEVE---------------------NWPGDPNDLTG   61 (320)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTT-TCCCEEECCS-STTGGGGGCSBCC---------------------CSTTCCSSCBH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHC-CCcEEEEccC-CCCceEecchhhh---------------------hCCCCCCCCCH
Confidence            58999999999999999999999 9999999975 4555432211100                     00001101123


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      ..+...+.+.+. +.++++++++ ++.+..+++.+..  ..              +..++.+|+||+|+|...
T Consensus        62 ~~~~~~~~~~~~-~~~~~~~~~~-v~~i~~~~~~~~v--~~--------------~~~~~~~~~lv~AtG~~~  116 (320)
T 1trb_A           62 PLLMERMHEHAT-KFETEIIFDH-INKVDLQNRPFRL--NG--------------DNGEYTCDALIIATGASA  116 (320)
T ss_dssp             HHHHHHHHHHHH-HTTCEEECCC-EEEEECSSSSEEE--EE--------------SSCEEEEEEEEECCCEEE
T ss_pred             HHHHHHHHHHHH-HCCCEEEEee-eeEEEecCCEEEE--Ee--------------CCCEEEcCEEEECCCCCc
Confidence            455555555554 5789999985 8888765554432  22              135789999999999754

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=99.00  E-value=1.2e-09  Score=100.91  Aligned_cols=111  Identities=20%  Similarity=0.277  Sum_probs=74.3

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEE-EeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEec
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAI-IEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKH  168 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~l-lEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~  168 (356)
                      .+||+|||||++|+++|+.|+++ |++|+| +|| ..+||.......+..                     ...+.....
T Consensus         4 ~~~vvIIG~G~aGl~aA~~l~~~-g~~v~li~e~-~~~gG~~~~~~~~~~---------------------~~~~~~~~~   60 (315)
T 3r9u_A            4 MLDVAIIGGGPAGLSAGLYATRG-GLKNVVMFEK-GMPGGQITSSSEIEN---------------------YPGVAQVMD   60 (315)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHH-TCSCEEEECS-SSTTGGGGGCSCBCC---------------------STTCCSCBC
T ss_pred             CceEEEECCCHHHHHHHHHHHHC-CCCeEEEEeC-CCCCceeeeeceecc---------------------CCCCCCCCC
Confidence            48999999999999999999999 999999 999 456654322111100                     000110123


Q ss_pred             hHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeC--CeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414          169 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG--GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       169 ~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~--~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~  241 (356)
                      ..++...+.+.+. +.+++++++ +|+++ .++  +.+. +....             +. ++.+|+||+|+|..
T Consensus        61 ~~~~~~~~~~~~~-~~~v~~~~~-~v~~i-~~~~~~~~~-v~~~~-------------~~-~~~~d~lvlAtG~~  117 (315)
T 3r9u_A           61 GISFMAPWSEQCM-RFGLKHEMV-GVEQI-LKNSDGSFT-IKLEG-------------GK-TELAKAVIVCTGSA  117 (315)
T ss_dssp             HHHHHHHHHHHHT-TTCCEEECC-CEEEE-EECTTSCEE-EEETT-------------SC-EEEEEEEEECCCEE
T ss_pred             HHHHHHHHHHHHH-HcCcEEEEE-EEEEE-ecCCCCcEE-EEEec-------------CC-EEEeCEEEEeeCCC
Confidence            4566666555554 779999998 88888 665  4433 21221             13 79999999999964

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=98.99  E-value=7e-10  Score=112.02  Aligned_cols=51  Identities=22%  Similarity=0.229  Sum_probs=40.6

Q ss_pred             cCCCcEEEcCeEEEEEEEe--CCeEEEEEEcceeeecccCCCCCCCCeEEEc-CEEEEcCCCCC
Q 018414          182 ARPNVKLFNAVAAEDLIVK--GGRVGGVVTNWALVSMNHDTQSCMDPNVMEA-KVVVSSCGHDG  242 (356)
Q Consensus       182 ~~~gv~i~~~~~v~~i~~~--~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A-k~VI~AtGg~~  242 (356)
                      ++.|+++++++.|++|+++  +++++||.+..      .    ++...+++| |-||+|+|+++
T Consensus       217 ~r~Nl~v~~~a~v~ri~~~~~~~~a~GV~~~~------~----~g~~~~v~A~keVILsaGa~~  270 (577)
T 3q9t_A          217 NKPNITIVPEVHSKRLIINEADRTCKGVTVVT------A----AGNELNFFADREVILSQGVFE  270 (577)
T ss_dssp             SCTTEEEECSEEEEEEEEETTTTEEEEEEEEE------T----TSCEEEEEEEEEEEECSHHHH
T ss_pred             cCCCeEEEcCcEEEEEEEeCCCCEEEEEEEEe------C----CCcEEEEEeeeEEEEcccccC
Confidence            4679999999999999998  78999998752      1    123567888 57999999764

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.99  E-value=6.1e-10  Score=109.82  Aligned_cols=135  Identities=21%  Similarity=0.281  Sum_probs=75.9

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCC------CccccCCccchhhhccchH-HHH----HHHhCCCcc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPG------GGAWLGGQLFSAMVVRKPA-HIF----LDELGIDYD  158 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~G------g~~~~~g~~~~~~~~~~~~-~~~----l~~~G~~~~  158 (356)
                      +|||+|||||++|+++|+.|++. |++|+||||...+|      |.|.+.+|++.+.+..... .+.    +..+|+.+.
T Consensus         3 ~~DVvVIGgG~aGl~aA~~la~~-G~~V~liEk~~~~gG~~~~GG~~~~~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~   81 (476)
T 3lad_A            3 KFDVIVIGAGPGGYVAAIKSAQL-GLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGISTG   81 (476)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHH-TCCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEECS
T ss_pred             cCCEEEECcCHHHHHHHHHHHhC-CCEEEEEeCCCccCCCCCcCCccccccHHHHHHHHHHHHHHHHHHHHHHhcCcccC
Confidence            59999999999999999999999 99999999987444      4444444555444333211 111    223343321


Q ss_pred             cc-CCeEE-EechHHHHHHH---HHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCE
Q 018414          159 EQ-DNYVV-IKHAALFTSTI---MSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKV  233 (356)
Q Consensus       159 ~~-~~~~~-~~~~~~~~~~l---~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~  233 (356)
                      .. .+|.. ......+...+   ++...++.+++++.++.+.   .+.+.+ .+...            +++..++.+|+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~---~~~~~~-~v~~~------------~g~~~~~~~d~  145 (476)
T 3lad_A           82 EVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKL---LAGKKV-EVTAA------------DGSSQVLDTEN  145 (476)
T ss_dssp             CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEE---CSTTCE-EEECT------------TSCEEEECCSC
T ss_pred             CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE---ecCCEE-EEEcC------------CCceEEEEcCE
Confidence            10 01100 00111111111   2223335689999885332   233332 22221            11236799999


Q ss_pred             EEEcCCCC
Q 018414          234 VVSSCGHD  241 (356)
Q Consensus       234 VI~AtGg~  241 (356)
                      ||+|||+.
T Consensus       146 lvlAtG~~  153 (476)
T 3lad_A          146 VILASGSK  153 (476)
T ss_dssp             EEECCCEE
T ss_pred             EEEcCCCC
Confidence            99999964

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=98.99  E-value=9.3e-10  Score=108.40  Aligned_cols=139  Identities=17%  Similarity=0.200  Sum_probs=81.5

Q ss_pred             ccEEEECCCHHHHHHHHHhhc---CCCCe---EEEEeccCCCCCccccC---Ccc----------chhhhccchHHHHHH
Q 018414           91 TDVVVVGAGSAGLSCAYELSK---NPNIQ---IAIIEQSVSPGGGAWLG---GQL----------FSAMVVRKPAHIFLD  151 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~---~~G~~---V~llEk~~~~Gg~~~~~---g~~----------~~~~~~~~~~~~~l~  151 (356)
                      +||+|||||++|+++|..|++   . |++   |+|+|+...+||.+...   ++.          +..+..+.. ...+.
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~-G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~-~~~~~   80 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEK-GAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGP-KECLE   80 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHT-TCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSC-GGGTC
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhc-CCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCC-hhhcc
Confidence            699999999999999999999   8 999   99999998887654321   111          100000000 00000


Q ss_pred             HhCCCcccc--CCeEEEechHHHHHHHHHHHHcCCCcE--EEcCeEEEEEEEeCC--eEEEEEEcceeeecccCCCCCCC
Q 018414          152 ELGIDYDEQ--DNYVVIKHAALFTSTIMSKLLARPNVK--LFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMD  225 (356)
Q Consensus       152 ~~G~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~gv~--i~~~~~v~~i~~~~~--~v~gv~~~~~~~~~~~~~~~~g~  225 (356)
                      -.++++...  .....+.+...+.+.+.+.+. +.|++  ++++++|+.+..+++  .+ .|.+.+      ..   +++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~gv~~~i~~~~~V~~v~~~~~~~~~-~V~~~~------~~---~g~  149 (464)
T 2xve_A           81 FADYTFDEHFGKPIASYPPREVLWDYIKGRVE-KAGVRKYIRFNTAVRHVEFNEDSQTF-TVTVQD------HT---TDT  149 (464)
T ss_dssp             BTTBCHHHHHSSCCCSSCBHHHHHHHHHHHHH-HHTCGGGEECSEEEEEEEEETTTTEE-EEEEEE------TT---TTE
T ss_pred             cCCCCCCcccCCCCCCCCCHHHHHHHHHHHHH-HcCCcceEEeCCEEEEEEEcCCCCcE-EEEEEE------cC---CCc
Confidence            001111100  000112244566666555554 45787  899999999988765  33 343321      00   012


Q ss_pred             CeEEEcCEEEEcCCCCC
Q 018414          226 PNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       226 ~~~i~Ak~VI~AtGg~~  242 (356)
                      ..++.+|.||+|||+++
T Consensus       150 ~~~~~~d~VVvAtG~~s  166 (464)
T 2xve_A          150 IYSEEFDYVVCCTGHFS  166 (464)
T ss_dssp             EEEEEESEEEECCCSSS
T ss_pred             eEEEEcCEEEECCCCCC
Confidence            35789999999999765

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.99  E-value=6.6e-10  Score=109.20  Aligned_cols=130  Identities=17%  Similarity=0.260  Sum_probs=81.3

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccch-HHHHHHH------hCCCcccc-C
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKP-AHIFLDE------LGIDYDEQ-D  161 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~-~~~~l~~------~G~~~~~~-~  161 (356)
                      +|||+|||||++|+++|+.|++. |++|+|+|+ ...||.|++.+|++.+.+.... ..+.+..      +|+++... .
T Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~-g~~V~lie~-~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~   82 (458)
T 1lvl_A            5 QTTLLIIGGGPGGYVAAIRAGQL-GIPTVLVEG-QALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASPRL   82 (458)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHH-TCCEEEECS-SCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHC-CCEEEEEcc-CCCCCcCCCcCcHhHHHHHHHHHHHHHHhhcccccccCcccCCCcc
Confidence            58999999999999999999999 999999999 5788888877777766544332 2222222      45543211 1


Q ss_pred             CeEE-EechHHHHHHH---HHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEc
Q 018414          162 NYVV-IKHAALFTSTI---MSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSS  237 (356)
Q Consensus       162 ~~~~-~~~~~~~~~~l---~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~A  237 (356)
                      ++.. ..+...+.+.+   ++...++.|++++.++.+.   .++..   +.+.               ..++.+|+||+|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~---~~~~~---v~v~---------------~~~~~~d~lviA  141 (458)
T 1lvl_A           83 DIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKV---LDGKQ---VEVD---------------GQRIQCEHLLLA  141 (458)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEE---EETTE---EEET---------------TEEEECSEEEEC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEE---ccCCE---EEEe---------------eEEEEeCEEEEe
Confidence            1110 01111122221   2223346799999997543   23332   2222               156899999999


Q ss_pred             CCCCC
Q 018414          238 CGHDG  242 (356)
Q Consensus       238 tGg~~  242 (356)
                      ||...
T Consensus       142 TGs~p  146 (458)
T 1lvl_A          142 TGSSS  146 (458)
T ss_dssp             CCEEE
T ss_pred             CCCCC
Confidence            99643

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=98.98  E-value=3.7e-10  Score=112.65  Aligned_cols=54  Identities=15%  Similarity=0.162  Sum_probs=42.8

Q ss_pred             HHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          178 SKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       178 ~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      .......|++++.++.|+.+..+++++++|....       .    +....+.|+.||+|.|+.+
T Consensus       218 ~~~~~r~nl~v~~~~~v~~i~~~~~~a~gv~~~~-------~----~~~~~~~a~~VILsAGai~  271 (526)
T 3t37_A          218 KAVRGRKNLTILTGSRVRRLKLEGNQVRSLEVVG-------R----QGSAEVFADQIVLCAGALE  271 (526)
T ss_dssp             HHHHTCTTEEEECSCEEEEEEEETTEEEEEEEEE-------T----TEEEEEEEEEEEECSHHHH
T ss_pred             ccccCCCCeEEEeCCEEEEEEecCCeEEEEEEEe-------c----CceEEEeecceEEcccccC
Confidence            3444578999999999999999999999988752       1    1246788999999999654

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.98  E-value=7.5e-10  Score=109.86  Aligned_cols=53  Identities=23%  Similarity=0.382  Sum_probs=47.8

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRK  144 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~  144 (356)
                      +|||+|||||++|+++|+.|++. |++|+|||++ .+||.|++.||++.+.+...
T Consensus         8 ~~DvvVIGgG~aGl~aA~~la~~-G~~V~liE~~-~~GGtc~~~gciPsk~l~~~   60 (492)
T 3ic9_A            8 NVDVAIIGTGTAGMGAYRAAKKH-TDKVVLIEGG-AYGTTCARVGCMPSKLLIAA   60 (492)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTT-CSCEEEEESS-CSSCHHHHHSHHHHHHHHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhC-CCcEEEEeCC-CCCCcccccChhcCHHHHHH
Confidence            59999999999999999999999 9999999997 48999998899888776554

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=98.97  E-value=7.2e-10  Score=109.04  Aligned_cols=130  Identities=19%  Similarity=0.229  Sum_probs=79.4

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchH-HHHH---HHhCCCcccc-CCeE
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA-HIFL---DELGIDYDEQ-DNYV  164 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~-~~~l---~~~G~~~~~~-~~~~  164 (356)
                      +|||+|||||++|+++|+.|++. |++|+|||| ..+||.|.+.||++.+.+..... ...+   ..+|+.+... .+|.
T Consensus         5 ~~DVvVIGaG~aGl~aA~~la~~-G~~V~liEk-~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~   82 (463)
T 4dna_A            5 DYDLFVIGGGSGGVRSGRLAAAL-GKKVAIAEE-FRYGGTCVIRGCVPKKLYVYASQFAEHFEDAAGFGWTVGESRFDWA   82 (463)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTT-TCCEEEEES-SCTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEECCCEECHH
T ss_pred             CCcEEEECcCHHHHHHHHHHHhC-CCEEEEEeC-CCCCCcccccCchhhHHHHHHHHHHHHHHHHHhcCcccCCCCcCHH
Confidence            59999999999999999999999 999999999 57898888888877766544322 2222   2344432211 0010


Q ss_pred             E-Eech----HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCC
Q 018414          165 V-IKHA----ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG  239 (356)
Q Consensus       165 ~-~~~~----~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtG  239 (356)
                      . ....    ..+...+...+ ++.+++++.+ .+..+  +...   +.+..             +...+.+|.+|+|||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~-~~~gv~~~~g-~~~~i--~~~~---v~~~~-------------~~~~~~~d~lviAtG  142 (463)
T 4dna_A           83 KLVAAKEQEIARLEGLYRKGL-ANAGAEILDT-RAELA--GPNT---VKLLA-------------SGKTVTAERIVIAVG  142 (463)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-HHHTCEEEES-CEEES--SSSE---EEETT-------------TTEEEEEEEEEECCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HhCCCEEEEE-EEEEe--eCCE---EEEec-------------CCeEEEeCEEEEecC
Confidence            0 0001    11222222223 3568998888 33332  2222   22210             136799999999999


Q ss_pred             CC
Q 018414          240 HD  241 (356)
Q Consensus       240 g~  241 (356)
                      ..
T Consensus       143 ~~  144 (463)
T 4dna_A          143 GH  144 (463)
T ss_dssp             EE
T ss_pred             CC
Confidence            64

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=98.97  E-value=3e-10  Score=112.62  Aligned_cols=138  Identities=16%  Similarity=0.237  Sum_probs=81.3

Q ss_pred             cccEEEECCCHHHHHHHHHhhc-CCCCeEEEEe--------ccCCCCCccccCCccchhhhccchH-HHHHH---HhCCC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSK-NPNIQIAIIE--------QSVSPGGGAWLGGQLFSAMVVRKPA-HIFLD---ELGID  156 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~-~~G~~V~llE--------k~~~~Gg~~~~~g~~~~~~~~~~~~-~~~l~---~~G~~  156 (356)
                      +|||+|||||++|+++|++|++ . |++|+|||        +...+||.|.+.||++.+.+..... .+.+.   .+|+.
T Consensus         3 ~~dvvVIGgG~aGl~aA~~la~~~-G~~V~liE~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~   81 (490)
T 1fec_A            3 AYDLVVIGAGSGGLEAGWNAASLH-KKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIRESAGFGWE   81 (490)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHHH-CCCEEEEESCSSSBTTTBSCTTCHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEE
T ss_pred             cccEEEECCCHHHHHHHHHHHHHc-CCEEEEEecccccccccCCCcCccccCCCcchhhHHHHHHHHHHHHHHHHhcCcc
Confidence            5899999999999999999999 9 99999999        3557899888888888776654322 22222   23432


Q ss_pred             ccc---cCCeEEE-echH----HHHHHHHHHHHcCC-CcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCC-C
Q 018414          157 YDE---QDNYVVI-KHAA----LFTSTIMSKLLARP-NVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMD-P  226 (356)
Q Consensus       157 ~~~---~~~~~~~-~~~~----~~~~~l~~~~~~~~-gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~-~  226 (356)
                      ...   ..+|... ....    .+...+.+.+ ++. |++++.++ ++.+  +...+. +...      ...   +++ .
T Consensus        82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l-~~~~gv~~~~g~-~~~i--~~~~v~-v~~~------~~~---~g~~~  147 (490)
T 1fec_A           82 LDRESVRPNWKALIAAKNKAVSGINDSYEGMF-ADTEGLTFHQGF-GALQ--DNHTVL-VRES------ADP---NSAVL  147 (490)
T ss_dssp             CCGGGCEECHHHHHHHHHHHHHHHHHHHHHHH-HTSTTEEEEESE-EEEE--ETTEEE-EESS------SST---TSCEE
T ss_pred             cCCcccccCHHHHHHHHHHHHHHHHHHHHHHH-hcCCCcEEEEeE-EEEe--eCCEEE-EEee------ccC---CCCce
Confidence            210   0011000 0011    1112222233 366 99999985 5443  333322 1110      000   000 1


Q ss_pred             eEEEcCEEEEcCCCCC
Q 018414          227 NVMEAKVVVSSCGHDG  242 (356)
Q Consensus       227 ~~i~Ak~VI~AtGg~~  242 (356)
                      .++.+|+||+|||...
T Consensus       148 ~~~~~d~lviAtGs~p  163 (490)
T 1fec_A          148 ETLDTEYILLATGSWP  163 (490)
T ss_dssp             EEEEEEEEEECCCEEE
T ss_pred             EEEEcCEEEEeCCCCC
Confidence            5799999999999643

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.96  E-value=2.6e-10  Score=113.36  Aligned_cols=52  Identities=27%  Similarity=0.477  Sum_probs=44.8

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhcc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVR  143 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~  143 (356)
                      +|||+|||||++|+++|+.|++. |++|+|+|+. ..||.|.+.+|++.+.+..
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~-g~~V~liE~~-~~GG~c~~~gc~P~k~l~~   53 (500)
T 1onf_A            2 VYDLIVIGGGSGGMAAARRAARH-NAKVALVEKS-RLGGTCVNVGCVPKKIMFN   53 (500)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHT-TCCEEEEESS-STTHHHHHTSHHHHHHHHH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHC-CCcEEEEeCC-CcCccccccCCcchHHHHH
Confidence            48999999999999999999999 9999999998 4788877778877655443

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.96  E-value=3e-09  Score=104.65  Aligned_cols=134  Identities=17%  Similarity=0.197  Sum_probs=79.6

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHH----h-CCCcccc-CCe
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDE----L-GIDYDEQ-DNY  163 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~----~-G~~~~~~-~~~  163 (356)
                      ++||+|||||++|+++|++|++. |++|+|||+. .+||.+.+.||++.+.+...........    + |++.... ..+
T Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~-g~~V~lie~~-~~GG~~~~~g~ip~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~   81 (467)
T 1zk7_A            4 PVQVAVIGSGGAAMAAALKAVEQ-GAQVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDR   81 (467)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESS-STTHHHHHHSHHHHHHHHHHHHHHHHHHCCTTTTTSCCCCCCCCH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHC-CCEEEEEeCC-CCCccccCCCccchHHHHHHHHHHHHHhhhhhcCCccCCCCccCH
Confidence            58999999999999999999999 9999999998 6888887778877665544322211111    1 2211100 011


Q ss_pred             EE-EechHHHHHHH----HHHHHcCC-CcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEc
Q 018414          164 VV-IKHAALFTSTI----MSKLLARP-NVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSS  237 (356)
Q Consensus       164 ~~-~~~~~~~~~~l----~~~~~~~~-gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~A  237 (356)
                      .. ..+...+...+    +....++. |++++.++ ++.+  +.+.+. +...+            ++..++++|+||+|
T Consensus        82 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~-~~~~--~~~~~~-v~~~~------------g~~~~~~~d~lviA  145 (467)
T 1zk7_A           82 SKLLAQQQARVDELRHAKYEGILGGNPAITVVHGE-ARFK--DDQSLT-VRLNE------------GGERVVMFDRCLVA  145 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHHTHHHHTTCTTEEEEEEE-EEEE--ETTEEE-EEETT------------SSEEEEECSEEEEC
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHhccCCeEEEEEE-EEEc--cCCEEE-EEeCC------------CceEEEEeCEEEEe
Confidence            10 00111122222    12333455 89998874 5443  334332 33221            11267999999999


Q ss_pred             CCCC
Q 018414          238 CGHD  241 (356)
Q Consensus       238 tGg~  241 (356)
                      ||..
T Consensus       146 tGs~  149 (467)
T 1zk7_A          146 TGAS  149 (467)
T ss_dssp             CCEE
T ss_pred             CCCC
Confidence            9964

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.95  E-value=3.5e-10  Score=111.86  Aligned_cols=135  Identities=18%  Similarity=0.201  Sum_probs=80.2

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHH-HHH---HHhCCCc-----c-
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAH-IFL---DELGIDY-----D-  158 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~-~~l---~~~G~~~-----~-  158 (356)
                      .+|||+|||||++|+++|+.|++. |++|+|||++ ..||.|.+.||++.+.+...... ..+   ..+|+..     . 
T Consensus        10 ~~~dVvVIGgG~aGl~aA~~l~~~-g~~V~liE~~-~~GG~~~n~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~   87 (479)
T 2hqm_A           10 KHYDYLVIGGGSGGVASARRAASY-GAKTLLVEAK-ALGGTCVNVGCVPKKVMWYASDLATRVSHANEYGLYQNLPLDKE   87 (479)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHT-SCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTBSTTSCCSGG
T ss_pred             ccCCEEEEcCCHHHHHHHHHHHHC-CCcEEEEeCC-CcCCcCcccCcHHHHHHHHHHHHHHHHHhHHhcCcccccccccc
Confidence            369999999999999999999999 9999999998 67888777777776655433211 222   1233322     1 


Q ss_pred             -ccCCeEEE-echHH----HHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcC
Q 018414          159 -EQDNYVVI-KHAAL----FTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAK  232 (356)
Q Consensus       159 -~~~~~~~~-~~~~~----~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak  232 (356)
                       ...+|... .....    +...+.+.+ ++.|++++.++ ++.+  +.+.+ .+...+            ++..++.+|
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~gv~~~~g~-~~~i--~~~~~-~v~~~~------------g~~~~~~~d  150 (479)
T 2hqm_A           88 HLTFNWPEFKQKRDAYVHRLNGIYQKNL-EKEKVDVVFGW-ARFN--KDGNV-EVQKRD------------NTTEVYSAN  150 (479)
T ss_dssp             GCCBCHHHHHHHHHHHHHHHHHHHHHHH-HHTTEEEEEEE-EEEC--TTSCE-EEEESS------------SCCEEEEEE
T ss_pred             cCccCHHHHHHHHHHHHHHHHHHHHHHH-HhCCCEEEEeE-EEEe--eCCEE-EEEeCC------------CcEEEEEeC
Confidence             01111100 01111    112222233 35789998884 4433  33332 222221            122479999


Q ss_pred             EEEEcCCCCC
Q 018414          233 VVVSSCGHDG  242 (356)
Q Consensus       233 ~VI~AtGg~~  242 (356)
                      .||+|||+..
T Consensus       151 ~lviAtGs~p  160 (479)
T 2hqm_A          151 HILVATGGKA  160 (479)
T ss_dssp             EEEECCCEEE
T ss_pred             EEEEcCCCCC
Confidence            9999999643

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.95  E-value=2.5e-09  Score=105.08  Aligned_cols=133  Identities=18%  Similarity=0.188  Sum_probs=79.0

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccch-HHHHHH----HhCCCcccc-CCe
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKP-AHIFLD----ELGIDYDEQ-DNY  163 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~-~~~~l~----~~G~~~~~~-~~~  163 (356)
                      +|||+|||||++|+++|+.|++. |++|+|+|+. ..||.+.+.++++.+.+.... ..+.+.    .+|+. ... .++
T Consensus         3 ~~dvvIIGaG~aGl~aA~~l~~~-G~~V~liE~~-~~gG~~~~~g~~psk~ll~~~~~~~~~~~~~~~~g~~-~~~~~~~   79 (464)
T 2a8x_A            3 HYDVVVLGAGPGGYVAAIRAAQL-GLSTAIVEPK-YWGGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGIS-GEVTFDY   79 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHHHTTTTTEE-ECCEECH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhC-CCeEEEEeCC-CCCCcccccCchhhHHHHHHHHHHHHHHHHHHhcCCC-CCCccCH
Confidence            48999999999999999999999 9999999998 677766666666554433321 122222    23332 000 000


Q ss_pred             EEE-ech----HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcC
Q 018414          164 VVI-KHA----ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSC  238 (356)
Q Consensus       164 ~~~-~~~----~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~At  238 (356)
                      ... .+.    ..+...+.+.+. +.|++++.++.+.   .+++.+. +...+            ++..++++|+||+||
T Consensus        80 ~~~~~~~~~~~~~l~~~l~~~~~-~~gv~~~~g~~~~---id~~~v~-V~~~~------------G~~~~~~~d~lViAt  142 (464)
T 2a8x_A           80 GIAYDRSRKVAEGRVAGVHFLMK-KNKITEIHGYGTF---ADANTLL-VDLND------------GGTESVTFDNAIIAT  142 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-HTTCEEECEEEEE---SSSSEEE-EEETT------------SCCEEEEEEEEEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-hCCCEEEEeEEEE---ecCCeEE-EEeCC------------CceEEEEcCEEEECC
Confidence            000 000    112223334444 5799999987543   2444332 33321            112679999999999


Q ss_pred             CCCC
Q 018414          239 GHDG  242 (356)
Q Consensus       239 Gg~~  242 (356)
                      |+..
T Consensus       143 G~~~  146 (464)
T 2a8x_A          143 GSST  146 (464)
T ss_dssp             CEEE
T ss_pred             CCCC
Confidence            9754

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.94  E-value=1.2e-09  Score=107.18  Aligned_cols=51  Identities=24%  Similarity=0.438  Sum_probs=45.3

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhc
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVV  142 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~  142 (356)
                      |||+|||||++|+++|+.|++. |++|+|||+.+.+||.+.+.++++.+.+.
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~-g~~V~lie~~~~~GG~~~~~g~~p~k~l~   52 (455)
T 2yqu_A            2 YDLLVIGAGPGGYVAAIRAAQL-GMKVGVVEKEKALGGTCLRVGCIPSKALL   52 (455)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSSSSSHHHHHHSHHHHHHHH
T ss_pred             CCEEEECCChhHHHHHHHHHHC-CCeEEEEeCCCCCCCccceecchhHHHHH
Confidence            8999999999999999999999 99999999998899888777777765443

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=98.93  E-value=3e-09  Score=104.48  Aligned_cols=39  Identities=36%  Similarity=0.629  Sum_probs=36.7

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCC--eEEEEeccCCCCCcc
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQSVSPGGGA  130 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~--~V~llEk~~~~Gg~~  130 (356)
                      +||+|||||++||++|++|+++ |.  +|+|+|+...+||.+
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~-G~~~~V~vlEa~~~~GG~~   43 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRA-PCPPKVVLVESSERLGGWI   43 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTS-SSCCEEEEECSSSSSBTTC
T ss_pred             ceEEEECCcHHHHHHHHHHHhC-CCCCcEEEEeCCCCCCCce
Confidence            6999999999999999999999 99  999999998888765

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.92  E-value=2.5e-09  Score=106.19  Aligned_cols=53  Identities=28%  Similarity=0.434  Sum_probs=44.6

Q ss_pred             cccEEEECCCHHHHHHHHHhhcC-C-CCeEEEEeccCCCCCccccCCccchhhhcc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKN-P-NIQIAIIEQSVSPGGGAWLGGQLFSAMVVR  143 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~-~-G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~  143 (356)
                      +|||+|||||++|+++|+.|++. | |++|+|||+.. +||.+.+.++++.+.+..
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~-~GG~~~~~g~~psk~l~~   56 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGAAVLDDCVPSKTFIA   56 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-TTHHHHHTSHHHHHHHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC-cCCcccCcCccchHHHHH
Confidence            48999999999999999999984 3 89999999997 888887777776655443

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.91  E-value=4.4e-09  Score=103.45  Aligned_cols=129  Identities=16%  Similarity=0.185  Sum_probs=78.7

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchH-HHHH---HHhCCCcccc-CCeE
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA-HIFL---DELGIDYDEQ-DNYV  164 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~-~~~l---~~~G~~~~~~-~~~~  164 (356)
                      +|||+|||||++|+++|++|++. |++|+|+|+. .+||.|.+.+|++.+.+..... ...+   ..+|+..... .+|.
T Consensus         4 ~~dVvIIGgG~aGl~aA~~l~~~-g~~V~liE~~-~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~   81 (463)
T 2r9z_A            4 HFDLIAIGGGSGGLAVAEKAAAF-GKRVALIESK-ALGGTCVNVGCVPKKVMWYASHLAEAVRDAPGFGVQASGGTLDWP   81 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTBCCC---CCHH
T ss_pred             cCcEEEECCCHHHHHHHHHHHhC-CCcEEEEcCC-CCCCcCcCcCchhHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHH
Confidence            58999999999999999999999 9999999998 6788877777777665543321 1222   2234332210 1111


Q ss_pred             E-EechHHHH----HHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCC
Q 018414          165 V-IKHAALFT----STIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG  239 (356)
Q Consensus       165 ~-~~~~~~~~----~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtG  239 (356)
                      . ..+...+.    ..+.+.+ ++.|++++.++ ++.+  +...+   .++               ..++++|+||+|||
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~-~~~gv~~~~g~-~~~i--~~~~v---~~~---------------g~~~~~d~lviAtG  139 (463)
T 2r9z_A           82 RLVAGRDRYIGAINSFWDGYV-ERLGITRVDGH-ARFV--DAHTI---EVE---------------GQRLSADHIVIATG  139 (463)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-HHTTCEEEESC-EEEE--ETTEE---EET---------------TEEEEEEEEEECCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHCCCEEEEeE-EEEc--cCCEE---EEC---------------CEEEEcCEEEECCC
Confidence            0 00111111    2222222 35799999885 3332  33322   221               25689999999999


Q ss_pred             CCC
Q 018414          240 HDG  242 (356)
Q Consensus       240 g~~  242 (356)
                      ...
T Consensus       140 s~p  142 (463)
T 2r9z_A          140 GRP  142 (463)
T ss_dssp             EEE
T ss_pred             CCC
Confidence            643

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.91  E-value=7.6e-09  Score=103.34  Aligned_cols=115  Identities=17%  Similarity=0.271  Sum_probs=76.7

Q ss_pred             CCcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEe
Q 018414           88 YADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIK  167 (356)
Q Consensus        88 ~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~  167 (356)
                      ...+||+|||||++|+++|+.|++. |++|+|+|+.  .||.+.....+..                  +.   .++ ..
T Consensus       210 ~~~~dVvIIGgG~AGl~aA~~la~~-G~~v~lie~~--~GG~~~~~~~~~~------------------~~---~~~-~~  264 (521)
T 1hyu_A          210 RDAYDVLIVGSGPAGAAAAVYSARK-GIRTGLMGER--FGGQVLDTVDIEN------------------YI---SVP-KT  264 (521)
T ss_dssp             SCCEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSS--TTGGGTTCSCBCC------------------BT---TBS-SB
T ss_pred             cCcccEEEECCcHHHHHHHHHHHhC-CCeEEEEECC--CCCcccccccccc------------------cC---CCC-CC
Confidence            3469999999999999999999999 9999999973  4443321111000                  00   000 01


Q ss_pred             chHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeC--CeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          168 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG--GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       168 ~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~--~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      ....+...+.+.+. +.|++++.+++|+.+..+.  +....+.+.+              ..++++|.||+|||+..
T Consensus       265 ~~~~l~~~l~~~~~-~~gv~v~~~~~v~~i~~~~~~~~~~~V~~~~--------------g~~~~~d~vVlAtG~~~  326 (521)
T 1hyu_A          265 EGQKLAGALKAHVS-DYDVDVIDSQSASKLVPAATEGGLHQIETAS--------------GAVLKARSIIIATGAKW  326 (521)
T ss_dssp             CHHHHHHHHHHHHH-TSCEEEECSCCEEEEECCSSTTSCEEEEETT--------------SCEEEEEEEEECCCEEE
T ss_pred             CHHHHHHHHHHHHH-HcCCEEEcCCEEEEEEeccCCCceEEEEECC--------------CCEEEcCEEEECCCCCc
Confidence            34556666666664 6799999999999997532  2223344431              35799999999999653

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=98.91  E-value=6.1e-09  Score=101.72  Aligned_cols=40  Identities=30%  Similarity=0.623  Sum_probs=36.7

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCC------CeEEEEeccCCCCCcc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPN------IQIAIIEQSVSPGGGA  130 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G------~~V~llEk~~~~Gg~~  130 (356)
                      .+||+|||||++||++|++|+++ |      ++|+|+|+.+.+||..
T Consensus         5 ~~dVvIIGaGiaGLsaA~~L~~~-G~~~~~~~~V~vlEa~~~~GG~~   50 (470)
T 3i6d_A            5 KKHVVIIGGGITGLAAAFYMEKE-IKEKNLPLELTLVEASPRVGGKI   50 (470)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHH-HTTTTCSEEEEEECSSSSSCTTC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHh-ccccCCCCCEEEEECCCCCCceE
Confidence            48999999999999999999998 8      9999999998888753

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.90  E-value=3.5e-09  Score=105.77  Aligned_cols=130  Identities=12%  Similarity=0.110  Sum_probs=80.6

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccch-HHHHHH---HhCCCccccCCeE
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKP-AHIFLD---ELGIDYDEQDNYV  164 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~-~~~~l~---~~G~~~~~~~~~~  164 (356)
                      .++||+|||||++|+++|+.|++. |++|+|||+...+||.|.+.++++.+.+.... ....+.   .+|+ |.....+ 
T Consensus        42 ~~~dVvIIGgG~aGl~aA~~l~~~-G~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~-~~~~~~~-  118 (523)
T 1mo9_A           42 REYDAIFIGGGAAGRFGSAYLRAM-GGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYW-FPDMTEK-  118 (523)
T ss_dssp             SCBSEEEECCSHHHHHHHHHHHHT-TCCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTT-CCCCTTC-
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC-CCCEEEEeCCCCCCCcccccCcCchHHHHHHHHHHHHHhhhhhcCc-HHHHHhh-
Confidence            358999999999999999999999 99999999998788887777776655443321 112222   2232 1111000 


Q ss_pred             EEechHHHHHHHHH------HHH-----cCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCE
Q 018414          165 VIKHAALFTSTIMS------KLL-----ARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKV  233 (356)
Q Consensus       165 ~~~~~~~~~~~l~~------~~~-----~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~  233 (356)
                       ......+...+..      ...     ++.++++++...++.+.  ...   +.+.               ...+.+|.
T Consensus       119 -~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~--~~~---v~~~---------------g~~~~~d~  177 (523)
T 1mo9_A          119 -VVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVID--NHT---VEAA---------------GKVFKAKN  177 (523)
T ss_dssp             -CCCHHHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEE--TTE---EEET---------------TEEEEBSC
T ss_pred             -hhhHHHHHHHHHhhhhhhhhhhhhcccccCCcEEEEeeEEEEee--CCE---EEEC---------------CEEEEeCE
Confidence             0013333333321      222     46799998555665543  332   2221               25689999


Q ss_pred             EEEcCCCCC
Q 018414          234 VVSSCGHDG  242 (356)
Q Consensus       234 VI~AtGg~~  242 (356)
                      ||+|||...
T Consensus       178 lViATGs~p  186 (523)
T 1mo9_A          178 LILAVGAGP  186 (523)
T ss_dssp             EEECCCEEC
T ss_pred             EEECCCCCC
Confidence            999999643

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.89  E-value=5.9e-10  Score=110.71  Aligned_cols=139  Identities=17%  Similarity=0.187  Sum_probs=80.2

Q ss_pred             cccEEEECCCHHHHHHHHHhhc-CCCCeEEEEe--------ccCCCCCccccCCccchhhhccchH-HH---HHHHhCCC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSK-NPNIQIAIIE--------QSVSPGGGAWLGGQLFSAMVVRKPA-HI---FLDELGID  156 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~-~~G~~V~llE--------k~~~~Gg~~~~~g~~~~~~~~~~~~-~~---~l~~~G~~  156 (356)
                      +|||+|||||++|+++|+.|++ . |++|+|||        +...+||.|.+.+|++.+.+..... .+   .+..+|+.
T Consensus         7 ~~dvvVIGgG~aGl~aA~~la~~~-G~~V~liE~~~~~~~~~~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~   85 (495)
T 2wpf_A            7 AFDLVVIGAGSGGLEAGWNAATLY-GKRVAVVDVQTSHGPPFYAALGGTCVNVGCVPKKLMVTGAQYMDHLRESAGFGWE   85 (495)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHH-CCCEEEEESCSSSBTTTBCBTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTTEE
T ss_pred             ccCEEEECCChhHHHHHHHHHHhc-CCeEEEEecccccccccCCCCCCeeecCCcchHHHHHHHHHHHHHHhHHHhcCcc
Confidence            5899999999999999999999 9 99999999        3456788887878887766554321 12   22234443


Q ss_pred             ccc---cCCeEE-EechHHHH----HHHHHHHHcCC-CcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCe
Q 018414          157 YDE---QDNYVV-IKHAALFT----STIMSKLLARP-NVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPN  227 (356)
Q Consensus       157 ~~~---~~~~~~-~~~~~~~~----~~l~~~~~~~~-gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~  227 (356)
                      ...   ..+|.. ......+.    ..+...+. +. +++++.++ ++.+  +...+   .+..      ..+.......
T Consensus        86 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~-~~~gv~~~~g~-~~~i--~~~~v---~v~~------~~~~~~~~~~  152 (495)
T 2wpf_A           86 FDGSSVKANWKKLIAAKNEAVLDINKSYEGMFN-DTEGLDFFLGW-GSLE--SKNVV---VVRE------TADPKSAVKE  152 (495)
T ss_dssp             CCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHH-HCTTEEEEESE-EEEE--ETTEE---EEES------SSSTTSCEEE
T ss_pred             cCCcccccCHHHHHHHHHHHHHHHHHHHHHHHh-cCCCeEEEEeE-EEEe--eCCEE---EEee------cCCccCCCCe
Confidence            211   001100 00111111    22222333 45 99999985 4443  33332   2210      0000000035


Q ss_pred             EEEcCEEEEcCCCCC
Q 018414          228 VMEAKVVVSSCGHDG  242 (356)
Q Consensus       228 ~i~Ak~VI~AtGg~~  242 (356)
                      ++.+|+||+|||...
T Consensus       153 ~~~~d~lViATGs~p  167 (495)
T 2wpf_A          153 RLQADHILLATGSWP  167 (495)
T ss_dssp             EEEEEEEEECCCEEE
T ss_pred             EEEcCEEEEeCCCCc
Confidence            799999999999643

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.89  E-value=6.3e-09  Score=101.95  Aligned_cols=53  Identities=21%  Similarity=0.295  Sum_probs=46.2

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRK  144 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~  144 (356)
                      +|||+|||||++|+++|+.|++. |++|+|+|++ ..||.|.+.||++.+.+...
T Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~-g~~V~liE~~-~~GG~~~~~gciP~k~l~~~   56 (450)
T 1ges_A            4 HYDYIAIGGGSGGIASINRAAMY-GQKCALIEAK-ELGGTCVNVGCVPKKVMWHA   56 (450)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTT-TCCEEEEESS-CTTHHHHHHSHHHHHHHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhC-CCeEEEEcCC-CCCCcccccCccChHHHHHH
Confidence            58999999999999999999998 9999999998 67888888888877665443

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=98.88  E-value=1.3e-09  Score=96.59  Aligned_cols=40  Identities=30%  Similarity=0.547  Sum_probs=37.2

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~  130 (356)
                      .+||+||||||+||+||+.|+++ |++|+|+||...+||..
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~~-G~~V~v~Ek~~~~GG~~   41 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTAA-GHQVHLFDKSRGSGGRM   41 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSCGGG
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC-CCCEEEEECCCCCCCcc
Confidence            48999999999999999999999 99999999999888754

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=98.87  E-value=1.9e-09  Score=102.20  Aligned_cols=36  Identities=31%  Similarity=0.548  Sum_probs=33.3

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSP  126 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~  126 (356)
                      ++||+|||||++|+++|++|+++ |++|+||||....
T Consensus         6 ~~dVvVIG~Gi~Gls~A~~La~~-G~~V~vle~~~~~   41 (363)
T 1c0p_A            6 QKRVVVLGSGVIGLSSALILARK-GYSVHILARDLPE   41 (363)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSCTT
T ss_pred             CCCEEEECCCHHHHHHHHHHHhC-CCEEEEEeccCCC
Confidence            58999999999999999999999 9999999998643

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=98.86  E-value=1.6e-08  Score=99.53  Aligned_cols=39  Identities=23%  Similarity=0.336  Sum_probs=36.6

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG  129 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~  129 (356)
                      +|||+|||+|++|+++|+.|++. |++|+++||++.+||.
T Consensus        20 ~~dv~iiG~G~~g~~~a~~l~~~-g~~v~~~e~~~~~Gg~   58 (475)
T 3p1w_A           20 HYDVIILGTGLKECILSGLLSHY-GKKILVLDRNPYYGGE   58 (475)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSCGG
T ss_pred             cCCEEEECCCHHHHHHHHHHHHC-CCcEEEEeccCCCCCC
Confidence            59999999999999999999999 9999999999888764

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=98.86  E-value=1.9e-08  Score=98.84  Aligned_cols=42  Identities=31%  Similarity=0.502  Sum_probs=36.9

Q ss_pred             CCcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414           88 YADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (356)
Q Consensus        88 ~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~  130 (356)
                      ...+||+|||||++||++|+.|+++ |++|+|+|+...+||.+
T Consensus        14 ~~~~~v~iiG~G~~Gl~aa~~l~~~-g~~v~v~E~~~~~GGr~   55 (478)
T 2ivd_A           14 TTGMNVAVVGGGISGLAVAHHLRSR-GTDAVLLESSARLGGAV   55 (478)
T ss_dssp             ---CCEEEECCBHHHHHHHHHHHTT-TCCEEEECSSSSSBTTC
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHC-CCCEEEEEcCCCCCcee
Confidence            3468999999999999999999999 99999999999888754

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=98.83  E-value=2.9e-08  Score=98.88  Aligned_cols=40  Identities=33%  Similarity=0.576  Sum_probs=37.3

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~  130 (356)
                      ++||+|||||++||+||+.|++. |++|+|+|++..+||.+
T Consensus         4 ~~~vvIIGaG~aGL~aA~~L~~~-G~~V~vlE~~~~~GGr~   43 (520)
T 1s3e_A            4 KCDVVVVGGGISGMAAAKLLHDS-GLNVVVLEARDRVGGRT   43 (520)
T ss_dssp             BCSEEEECCBHHHHHHHHHHHHT-TCCEEEECSSSSSBTTC
T ss_pred             CceEEEECCCHHHHHHHHHHHHC-CCCEEEEeCCCCCCCce
Confidence            47999999999999999999999 99999999999888765

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=98.83  E-value=8.7e-10  Score=105.53  Aligned_cols=124  Identities=18%  Similarity=0.142  Sum_probs=75.9

Q ss_pred             cEEEECCCHHHHHHHHHhhcC-CCCeEEEEeccCCC---CCccccCCccch----------h-hhccc---hHHHHHHHh
Q 018414           92 DVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSP---GGGAWLGGQLFS----------A-MVVRK---PAHIFLDEL  153 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~-~G~~V~llEk~~~~---Gg~~~~~g~~~~----------~-~~~~~---~~~~~l~~~  153 (356)
                      ||+|||||++|+++|+.|+++ ||++|+|+||...+   |.+....+....          . .....   ....++. .
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~   80 (381)
T 3c4a_A            2 KILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLDAPERLNPQFLEDFKLVH-H   80 (381)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEEEESCTTTCTTCGGGGSSCGGGGCCEEECCEEEEE-S
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCCcceeEEEeCcHHHHhhcCcchhhhhhHHHhhccccceEEEe-C
Confidence            899999999999999999984 58999999998765   322211111000          0 00000   0000000 1


Q ss_pred             CCCcccc-CCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcC
Q 018414          154 GIDYDEQ-DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAK  232 (356)
Q Consensus       154 G~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak  232 (356)
                      |..+... .......+...+.+.|.+.+. +.|++++++++|+++...                          .++++|
T Consensus        81 g~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~gv~i~~~~~v~~i~~~--------------------------~~~~ad  133 (381)
T 3c4a_A           81 NEPSLMSTGVLLCGVERRGLVHALRDKCR-SQGIAIRFESPLLEHGEL--------------------------PLADYD  133 (381)
T ss_dssp             SSEEECCCCSCEEEEEHHHHHHHHHHHHH-HTTCEEETTCCCCSGGGC--------------------------CGGGCS
T ss_pred             CeeEEecCCCceeeecHHHHHHHHHHHHH-HCCCEEEeCCEeccchhc--------------------------ccccCC
Confidence            1111111 111234566888888888887 459999999987766310                          125699


Q ss_pred             EEEEcCCCCCC
Q 018414          233 VVVSSCGHDGP  243 (356)
Q Consensus       233 ~VI~AtGg~~~  243 (356)
                      .||+|+|..+.
T Consensus       134 ~vV~AdG~~S~  144 (381)
T 3c4a_A          134 LVVLANGVNHK  144 (381)
T ss_dssp             EEEECCGGGGG
T ss_pred             EEEECCCCCch
Confidence            99999998765

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=98.83  E-value=8.4e-09  Score=104.66  Aligned_cols=137  Identities=18%  Similarity=0.241  Sum_probs=78.5

Q ss_pred             CCcccEEEECCCHHHHHHHHHhhcCCCCeEEEEecc-C-------CCCCccccCCccchhhhccch----HHHHHHHhCC
Q 018414           88 YADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS-V-------SPGGGAWLGGQLFSAMVVRKP----AHIFLDELGI  155 (356)
Q Consensus        88 ~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~-~-------~~Gg~~~~~g~~~~~~~~~~~----~~~~l~~~G~  155 (356)
                      ..+|||+|||||++|+++|+.|++. |++|+|+|+. +       ..||.|.+.++++.+.+....    ....+..+|+
T Consensus       105 ~~~~dvvVIG~GpAGl~aA~~l~~~-g~~v~liE~~~~~~~g~~~~~GG~~~~~g~iP~~~l~~~~~~~~~~~~~~~~g~  183 (598)
T 2x8g_A          105 KYDYDLIVIGGGSGGLAAGKEAAKY-GAKTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLMHQAGLLSHALEDAEHFGW  183 (598)
T ss_dssp             SSSEEEEEECCSHHHHHHHHHHHHT-TCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cccccEEEECCCccHHHHHHHHHhC-CCeEEEEeccCCcccccccccCceEeccCCCchHHHHHHHHHHHHHhhHHhCCc
Confidence            3469999999999999999999999 9999999973 2       256655566666655443321    2334556776


Q ss_pred             Ccccc---CCeEEE-echHHHHHH----HHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCe
Q 018414          156 DYDEQ---DNYVVI-KHAALFTST----IMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPN  227 (356)
Q Consensus       156 ~~~~~---~~~~~~-~~~~~~~~~----l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~  227 (356)
                      .+...   .+|... .....+...    +...+ +..+++++.+. +..+  +...+. +...            +|+..
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~V~~~~~~-~~~~--~~~~v~-v~~~------------~g~~~  246 (598)
T 2x8g_A          184 SLDRSKISHNWSTMVEGVQSHIGSLNWGYKVAL-RDNQVTYLNAK-GRLI--SPHEVQ-ITDK------------NQKVS  246 (598)
T ss_dssp             CCCGGGCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHTTCEEECSE-EEEE--ETTEEE-EECT------------TCCEE
T ss_pred             cccCCcCccCHHHHHHHHHHHHHHHHHHHHHHH-hhCCcEEEEEE-EEEc--CCCEEE-EEeC------------CCCeE
Confidence            55321   111100 000111111    11122 24689988763 3222  223222 1111            11225


Q ss_pred             EEEcCEEEEcCCCCC
Q 018414          228 VMEAKVVVSSCGHDG  242 (356)
Q Consensus       228 ~i~Ak~VI~AtGg~~  242 (356)
                      ++.+|+||+|||+..
T Consensus       247 ~~~~d~lviAtGs~p  261 (598)
T 2x8g_A          247 TITGNKIILATGERP  261 (598)
T ss_dssp             EEEEEEEEECCCEEE
T ss_pred             EEEeCEEEEeCCCCC
Confidence            689999999999643

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=98.82  E-value=4.3e-08  Score=96.78  Aligned_cols=40  Identities=28%  Similarity=0.508  Sum_probs=37.2

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~  130 (356)
                      ++||+|||||++||+||+.|++. |++|+|+|+...+||.+
T Consensus        39 ~~~v~iiGaG~aGl~aA~~l~~~-g~~v~v~E~~~~~GGr~   78 (495)
T 2vvm_A           39 PWDVIVIGGGYCGLTATRDLTVA-GFKTLLLEARDRIGGRS   78 (495)
T ss_dssp             CEEEEEECCBHHHHHHHHHHHHT-TCCEEEECSSSBSBTTC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHC-CCCEEEEeCCCCCCCcc
Confidence            48999999999999999999999 99999999999888764

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=98.82  E-value=9.8e-10  Score=103.73  Aligned_cols=38  Identities=32%  Similarity=0.482  Sum_probs=33.5

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCC------CeEEEEeccCCCCCcc
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPN------IQIAIIEQSVSPGGGA  130 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G------~~V~llEk~~~~Gg~~  130 (356)
                      ||+|||||++|+++|++|+++ |      .+|+|||+....++.+
T Consensus         2 dVvIIGgGi~Gls~A~~La~~-G~~~~p~~~V~vlE~~~~~~~aS   45 (351)
T 3g3e_A            2 RVVVIGAGVIGLSTALCIHER-YHSVLQPLDIKVYADRFTPLTTT   45 (351)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-HTTTSSSCEEEEEESSCGGGSGG
T ss_pred             cEEEECCCHHHHHHHHHHHHh-ccccCCCceEEEEECCCCCCCcc
Confidence            899999999999999999998 7      9999999986544443

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=98.78  E-value=8.7e-09  Score=103.78  Aligned_cols=37  Identities=43%  Similarity=0.693  Sum_probs=33.4

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSP  126 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~  126 (356)
                      +||+||||||.+|+.+|.+|++.++.+|+|||++...
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~   38 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSD   38 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCC
T ss_pred             CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcc
Confidence            4999999999999999999999559999999998643

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.73  E-value=2.8e-08  Score=98.54  Aligned_cols=112  Identities=28%  Similarity=0.348  Sum_probs=76.4

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~  169 (356)
                      ++||+|||||++|+++|++|++.  ++|+|||+...+||..+......               +|++      .    ..
T Consensus       108 ~~dVvIIGgG~aGl~aA~~L~~~--~~V~vie~~~~~GG~~~~~~~~~---------------~g~~------~----~~  160 (493)
T 1y56_A          108 VVDVAIIGGGPAGIGAALELQQY--LTVALIEERGWLGGDMWLKGIKQ---------------EGFN------K----DS  160 (493)
T ss_dssp             EESCCEECCSHHHHHHHHHHTTT--CCEEEECTTSSSSCSGGGTCSEE---------------TTTT------E----EH
T ss_pred             cCCEEEECccHHHHHHHHHHHhc--CCEEEEeCCCCCCCeeecccccc---------------CCCC------C----CH
Confidence            58999999999999999999987  89999999988776544211000               1111      0    23


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      .++...+.+.+  +.+++++.++.|.++..++..+.......            ++...+.+|++|+|||...
T Consensus       161 ~~~~~~l~~~l--~~~v~~~~~~~v~~i~~~~~~~~~~~~~~------------~~~~~~~~d~lvlAtGa~~  219 (493)
T 1y56_A          161 RKVVEELVGKL--NENTKIYLETSALGVFDKGEYFLVPVVRG------------DKLIEILAKRVVLATGAID  219 (493)
T ss_dssp             HHHHHHHHHTC--CTTEEEETTEEECCCEECSSSEEEEEEET------------TEEEEEEESCEEECCCEEE
T ss_pred             HHHHHHHHHHH--hcCCEEEcCCEEEEEEcCCcEEEEEEecC------------CeEEEEECCEEEECCCCCc
Confidence            34444444444  56999999999998887665443322211            1124789999999999643

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=98.73  E-value=9.2e-08  Score=95.02  Aligned_cols=137  Identities=15%  Similarity=0.164  Sum_probs=82.8

Q ss_pred             cccEEEECCCHHHHHHHHHhhcC-------------CCCeEEEEeccCCCCCccccCCccchhh----------hc--c-
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKN-------------PNIQIAIIEQSVSPGGGAWLGGQLFSAM----------VV--R-  143 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~-------------~G~~V~llEk~~~~Gg~~~~~g~~~~~~----------~~--~-  143 (356)
                      -|||||||+|++||++|+.|.+.             ++..++.+||.+..+   |..|.++...          +.  . 
T Consensus        39 i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~f~---Wh~g~~~p~~~~q~~fl~Dlvtl~~P  115 (501)
T 4b63_A           39 LHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFA---WHSGMLVPGSKMQISFIKDLATLRDP  115 (501)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSSCC---SSGGGCCTTCBCSSCGGGSSSTTTCT
T ss_pred             cCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCCCC---cCCCCCCCCccccccchhhhccccCC
Confidence            38999999999999999998753             144677888876544   5544332211          00  0 


Q ss_pred             ---chHHHHHHHhCC--CccccCCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCC-------eEEEEEEcc
Q 018414          144 ---KPAHIFLDELGI--DYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG-------RVGGVVTNW  211 (356)
Q Consensus       144 ---~~~~~~l~~~G~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~-------~v~gv~~~~  211 (356)
                         .....+|.+.|-  +|.....+  .....++.++|...+ ++.+..+.++++|+++...+.       ..+.|.+.+
T Consensus       116 ~s~~sf~~yl~~~~rl~~f~~~~~~--~p~r~E~~~Yl~~~A-~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~  192 (501)
T 4b63_A          116 RSSFTFLNYLHQKGRLIHFTNLSTF--LPARLEFEDYMRWCA-QQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRN  192 (501)
T ss_dssp             TCTTSHHHHHHHHTCHHHHHTTCCS--CCBHHHHHHHHHHHH-HTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEE
T ss_pred             CCccchHHHHHHhCCccCCccccCC--CCCHHHHHHHHHHHH-HHcCCceEcceEEEeeccccccccccccceEEEEEec
Confidence               123455555442  22222221  123455665544433 356777999999999987542       134444432


Q ss_pred             eeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414          212 ALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       212 ~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~  241 (356)
                            ..   .++..++.|+.||+|+|..
T Consensus       193 ------~~---~g~~~~~~ar~vVlatG~~  213 (501)
T 4b63_A          193 ------VE---TGEISARRTRKVVIAIGGT  213 (501)
T ss_dssp             ------TT---TCCEEEEEEEEEEECCCCE
T ss_pred             ------CC---CceEEEEEeCEEEECcCCC
Confidence                  11   2345789999999999954

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=98.72  E-value=7.2e-08  Score=103.03  Aligned_cols=124  Identities=19%  Similarity=0.213  Sum_probs=78.1

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~  169 (356)
                      ++||+|||+|++|+++|+.|++. |++|+|||+...+||.++. .   .+....                  ..    ..
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~~-G~~V~lie~~~~~GG~~~~-~---~k~~i~------------------~~----~~  180 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASRS-GARVMLLDERAEAGGTLLD-T---AGEQID------------------GM----DS  180 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSSGGGGG-S---SCCEET------------------TE----EH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhC-CCcEEEEeCCCCCCceecc-C---CccccC------------------CC----CH
Confidence            58999999999999999999999 9999999999888865552 1   000000                  00    12


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCC-CCCCCCeEEEcCEEEEcCCCC
Q 018414          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDT-QSCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~-~~~g~~~~i~Ak~VI~AtGg~  241 (356)
                      .++...+.+.+.+..+++++.+++|..+.. ++.+..+......+...... ...++..++.+|+||+|||..
T Consensus       181 ~~~~~~~~~~l~~~~~v~~~~~~~V~~i~~-~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs~  252 (965)
T 2gag_A          181 SAWIEQVTSELAEAEETTHLQRTTVFGSYD-ANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGAH  252 (965)
T ss_dssp             HHHHHHHHHHHHHSTTEEEESSEEEEEEET-TTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCEE
T ss_pred             HHHHHHHHHHHhhcCCcEEEeCCEEEeeec-CCceeeeEeecccccccccccCCCCceEEEECCEEEECCCCc
Confidence            344455556665456999999999988853 34443332211000000000 000112478999999999974

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=98.71  E-value=3.4e-08  Score=100.64  Aligned_cols=38  Identities=32%  Similarity=0.496  Sum_probs=35.4

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG  128 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg  128 (356)
                      +|||+|||+|++|+.+|+.|++. |++|+|||+....++
T Consensus        46 ~~dvvIIG~G~aGl~aA~~l~~~-G~~V~liE~~~~~gg   83 (623)
T 3pl8_A           46 KYDVVIVGSGPIGCTYARELVGA-GYKVAMFDIGEIDSG   83 (623)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSCCCSS
T ss_pred             cCCEEEECCcHHHHHHHHHHHhC-CCcEEEEeccCCCCC
Confidence            58999999999999999999999 999999999876664

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.69  E-value=4.5e-08  Score=96.33  Aligned_cols=120  Identities=13%  Similarity=0.128  Sum_probs=61.6

Q ss_pred             ccEEEECCCHHHHHHHHHhhcC-CCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414           91 TDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~-~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~  169 (356)
                      +||+|||||++|+++|+.|++. +|.+|+|||+.+.++   |....++.          ++   +-.+.....+..  ..
T Consensus         4 ~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~---~~~~gl~~----------~~---~g~~~~~~~~~~--~~   65 (472)
T 3iwa_A            4 KHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRIS---YGGCGIPY----------YV---SGEVSNIESLQA--TP   65 (472)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC----------------------------------------------
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCccc---ccccccch----------hh---cCCCCchHHhcc--cc
Confidence            6999999999999999999973 489999999997653   11100000          00   000000000000  00


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~  241 (356)
                      ..+. ...+.+.++.+++++++++|+.+..++..+......            +++...+.+|.+|+|||..
T Consensus        66 ~~~~-~~~~~~~~~~gi~~~~~~~V~~id~~~~~v~~~~~~------------~g~~~~~~~d~lviAtG~~  124 (472)
T 3iwa_A           66 YNVV-RDPEFFRINKDVEALVETRAHAIDRAAHTVEIENLR------------TGERRTLKYDKLVLALGSK  124 (472)
T ss_dssp             ----------------CEEECSEEEEEEETTTTEEEEEETT------------TCCEEEEECSEEEECCCEE
T ss_pred             chhc-cCHHHHhhhcCcEEEECCEEEEEECCCCEEEEeecC------------CCCEEEEECCEEEEeCCCC
Confidence            0011 112233335689999999999997766654321111            1123579999999999964

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.68  E-value=3.5e-08  Score=96.62  Aligned_cols=112  Identities=19%  Similarity=0.279  Sum_probs=68.9

Q ss_pred             ccEEEECCCHHHHHHHHHhhcC-CCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414           91 TDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~-~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~  169 (356)
                      +||+|||||++|+++|+.|++. +|.+|+|||+...+|.   ....+..          ++..   .+..         .
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~---~~~~~~~----------~~~~---~~~~---------~   57 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGY---LSGGLSA----------YFNH---TINE---------L   57 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSS---CCC-----------------------------------
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcc---cCccchh----------hhcC---CCCC---------H
Confidence            5999999999999999999983 4899999999986651   1111100          0000   0000         0


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      ..+...+.+.+. +.+++++.+++|+.+..+++.+... ...             +..++.+|.+|+|||+..
T Consensus        58 ~~~~~~~~~~~~-~~gi~~~~~~~V~~id~~~~~v~v~-~~~-------------~~~~~~~d~lviAtG~~p  115 (452)
T 3oc4_A           58 HEARYITEEELR-RQKIQLLLNREVVAMDVENQLIAWT-RKE-------------EQQWYSYDKLILATGASQ  115 (452)
T ss_dssp             ---CCCCHHHHH-HTTEEEECSCEEEEEETTTTEEEEE-ETT-------------EEEEEECSEEEECCCCCB
T ss_pred             HHhhcCCHHHHH-HCCCEEEECCEEEEEECCCCEEEEE-ecC-------------ceEEEEcCEEEECCCccc
Confidence            000000112222 4689999999999998766654322 110             246799999999999754

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=98.68  E-value=8.2e-08  Score=94.22  Aligned_cols=39  Identities=31%  Similarity=0.579  Sum_probs=36.0

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCC--CeEEEEeccCCCCCc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPN--IQIAIIEQSVSPGGG  129 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G--~~V~llEk~~~~Gg~  129 (356)
                      .+||+|||||++|+++|++|+++ |  ++|+|+|+...+||.
T Consensus         4 ~~~v~IiGaG~~Gl~~A~~L~~~-g~~~~v~v~E~~~~~GG~   44 (475)
T 3lov_A            4 SKRLVIVGGGITGLAAAYYAERA-FPDLNITLLEAGERLGGK   44 (475)
T ss_dssp             SCEEEEECCBHHHHHHHHHHHHH-CTTSEEEEECSSSSSBTT
T ss_pred             cccEEEECCCHHHHHHHHHHHHh-CCCCCEEEEECCCCCCce
Confidence            48999999999999999999998 8  999999998888764

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=98.66  E-value=4.1e-08  Score=102.27  Aligned_cols=38  Identities=34%  Similarity=0.670  Sum_probs=35.9

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG  128 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg  128 (356)
                      .+||+|||||++|+++|+.|++. |++|+|+|+...+||
T Consensus       336 ~~~v~viG~G~~Gl~aA~~l~~~-g~~v~v~E~~~~~gg  373 (776)
T 4gut_A          336 NKSVIIIGAGPAGLAAARQLHNF-GIKVTVLEAKDRIGG  373 (776)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHH-TCEEEEECSSSSSCT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHC-CCcEEEEecccceec
Confidence            58999999999999999999999 999999999888877

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.64  E-value=4.7e-08  Score=95.59  Aligned_cols=110  Identities=15%  Similarity=0.161  Sum_probs=64.4

Q ss_pred             cccEEEECCCHHHHHHHHHhhcC-CCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEec
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKH  168 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~-~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~  168 (356)
                      .+||+|||||++|+++|+.|++. ++.+|+|+|+.+..+...+   .++.          ++...             ..
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~---~~p~----------~~~~~-------------~~   56 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPC---GIPY----------VVEGL-------------ST   56 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC-----------------------------------------
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCc---CCcc----------ccCCC-------------CC
Confidence            37999999999999999999984 3789999999875542111   0000          00000             00


Q ss_pred             hHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414          169 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       169 ~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~  241 (356)
                      ...+.....+.+.++.|++++++++|+.+..++   ..+...+             ...++.+|.||+|||+.
T Consensus        57 ~~~~~~~~~~~~~~~~gi~v~~~~~v~~i~~~~---~~v~~~~-------------g~~~~~~d~lviAtG~~  113 (449)
T 3kd9_A           57 PDKLMYYPPEVFIKKRGIDLHLNAEVIEVDTGY---VRVRENG-------------GEKSYEWDYLVFANGAS  113 (449)
T ss_dssp             ---------CTHHHHTTCEEETTCEEEEECSSE---EEEECSS-------------SEEEEECSEEEECCCEE
T ss_pred             HHHhhhcCHHHHHHhcCcEEEecCEEEEEecCC---CEEEECC-------------ceEEEEcCEEEECCCCC
Confidence            111111122233235699999999998884322   1222211             12579999999999964

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=98.64  E-value=2.2e-08  Score=100.31  Aligned_cols=35  Identities=29%  Similarity=0.498  Sum_probs=32.2

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCC
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS  125 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~  125 (356)
                      .+||+||||+|.+|+.+|.+|++  |.+|+|||++..
T Consensus        25 ~~yD~IIVGsG~AG~v~A~rLse--g~~VlvLEaG~~   59 (536)
T 1ju2_A           25 GSYDYVIVGGGTSGCPLAATLSE--KYKVLVLERGSL   59 (536)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTT--TSCEEEECSSBC
T ss_pred             CcccEEEECccHHHHHHHHHHhc--CCcEEEEecCCC
Confidence            35999999999999999999998  799999999854

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=98.63  E-value=1.6e-08  Score=98.42  Aligned_cols=34  Identities=24%  Similarity=0.484  Sum_probs=31.9

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .+||+|||||++|+++|+.|+++ |++|+||||..
T Consensus        22 ~~~ViIVGaGpaGl~~A~~La~~-G~~V~viE~~~   55 (430)
T 3ihm_A           22 KKRIGIVGAGTAGLHLGLFLRQH-DVDVTVYTDRK   55 (430)
T ss_dssp             -CEEEEECCHHHHHHHHHHHHHT-TCEEEEEESCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHC-CCeEEEEcCCC
Confidence            47999999999999999999999 99999999975

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.63  E-value=2.1e-08  Score=103.56  Aligned_cols=41  Identities=34%  Similarity=0.518  Sum_probs=37.5

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW  131 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~  131 (356)
                      .+||+|||||++|+++|+.|+++ |++|+|+|+....||..+
T Consensus       391 ~~~VvIIGgG~AGl~aA~~La~~-G~~V~liE~~~~~GG~~~  431 (690)
T 3k30_A          391 DARVLVVGAGPSGLEAARALGVR-GYDVVLAEAGRDLGGRVT  431 (690)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHH-TCEEEEECSSSSSCTHHH
T ss_pred             cceEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCCCCEee
Confidence            58999999999999999999999 999999999988877543

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=98.62  E-value=4.6e-08  Score=98.15  Aligned_cols=59  Identities=27%  Similarity=0.325  Sum_probs=43.6

Q ss_pred             HHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEE---EcCEEEEcCCCCC
Q 018414          175 TIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVM---EAKVVVSSCGHDG  242 (356)
Q Consensus       175 ~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i---~Ak~VI~AtGg~~  242 (356)
                      .+++.+.++.|++++.++.|++|+.+++++.||.+.+      ..   +++..++   .+|.||+|+|+++
T Consensus       200 ~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~gV~~~~------~~---~g~~~~~~v~~~~~VIlaaG~~~  261 (546)
T 1kdg_A          200 TYLQTALARPNFTFKTNVMVSNVVRNGSQILGVQTND------PT---LGPNGFIPVTPKGRVILSAGAFG  261 (546)
T ss_dssp             THHHHHHTCTTEEEECSCCEEEEEEETTEEEEEEESC------TT---SSGGGEEEEEEEEEEEECSHHHH
T ss_pred             HHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEe------cC---CCceeEEEEEeCCEEEEcCChhc
Confidence            4566666567999999999999999988999998742      10   1122233   7899999999754

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.59  E-value=7e-08  Score=97.62  Aligned_cols=115  Identities=17%  Similarity=0.177  Sum_probs=70.8

Q ss_pred             cccEEEECCCHHHHHHHHHhhcC-CCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEec
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKH  168 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~-~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~  168 (356)
                      ..||+|||||++|+++|+.|++. ++.+|+|+|+...++   |....++          .++  .+......        
T Consensus        36 ~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~---~~~~~lp----------~~~--~g~~~~~~--------   92 (588)
T 3ics_A           36 SRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYIS---FANCGLP----------YYI--GGVITERQ--------   92 (588)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSS---BCGGGHH----------HHH--TTSSCCGG--------
T ss_pred             CCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCcc---ccCCCCc----------hhh--cCcCCChH--------
Confidence            47999999999999999999984 479999999997654   1110000          000  01100000        


Q ss_pred             hHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414          169 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       169 ~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~  241 (356)
                       ..+... ++.+.++.+++++++++|+++..+++.+......            +++...+.+|.||+|||..
T Consensus        93 -~~~~~~-~~~~~~~~gi~v~~~~~V~~id~~~~~v~v~~~~------------~g~~~~~~~d~lviAtG~~  151 (588)
T 3ics_A           93 -KLLVQT-VERMSKRFNLDIRVLSEVVKINKEEKTITIKNVT------------TNETYNEAYDVLILSPGAK  151 (588)
T ss_dssp             -GGBSSC-HHHHHHHTTCEEECSEEEEEEETTTTEEEEEETT------------TCCEEEEECSEEEECCCEE
T ss_pred             -HhhccC-HHHHHHhcCcEEEECCEEEEEECCCCEEEEeecC------------CCCEEEEeCCEEEECCCCC
Confidence             000011 2222235689999999999998776654322111            1123578999999999964

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=98.59  E-value=1.3e-08  Score=99.29  Aligned_cols=113  Identities=15%  Similarity=0.132  Sum_probs=67.1

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCC--CeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPN--IQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G--~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~  169 (356)
                      .|||||||++|++||..|++. |  .+|+|||+.......   ..++. .         ++.  +...+......  ...
T Consensus         2 KVvIIG~G~AGl~aA~~l~~~-g~~~~V~lie~~~~~~~~---~~~l~-~---------~~~--~~~~~~~~~~~--~~~   63 (437)
T 4eqs_A            2 KIVVVGAVAGGATCASQIRRL-DKESDIIIFEKDRDMSFA---NCALP-Y---------VIG--EVVEDRRYALA--YTP   63 (437)
T ss_dssp             CEEEECCSTTHHHHHHHHHHH-CSSSCEEEEESSSCSSBC---GGGHH-H---------HHT--TSSCCGGGTBC--CCH
T ss_pred             eEEEECCCHHHHHHHHHHHhC-CCCCcEEEEeCCCCCCCC---cchhH-H---------HHc--CCccchhhhhh--cCH
Confidence            599999999999999999986 5  679999998643321   11111 0         110  01000000000  111


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      .    .++    ++.+++++.+++|+.+..+...+......            .++..++.+|++|+|||+..
T Consensus        64 ~----~~~----~~~~i~~~~~~~V~~id~~~~~~~~~~~~------------~~~~~~~~yd~lVIATGs~p  116 (437)
T 4eqs_A           64 E----KFY----DRKQITVKTYHEVIAINDERQTVSVLNRK------------TNEQFEESYDKLILSPGASA  116 (437)
T ss_dssp             H----HHH----HHHCCEEEETEEEEEEETTTTEEEEEETT------------TTEEEEEECSEEEECCCEEE
T ss_pred             H----HHH----HhcCCEEEeCCeEEEEEccCcEEEEEecc------------CCceEEEEcCEEEECCCCcc
Confidence            1    112    24589999999999987665544322211            11346789999999999653

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.58  E-value=6.7e-08  Score=95.41  Aligned_cols=115  Identities=11%  Similarity=0.098  Sum_probs=69.8

Q ss_pred             ccEEEECCCHHHHHHHHHhhcC-CCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414           91 TDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~-~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~  169 (356)
                      +||+|||||++|+++|+.|++. +|.+|+|||+....+...+   .+.          .++......+..          
T Consensus        37 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~---~~~----------~~~~~~~~~~~~----------   93 (480)
T 3cgb_A           37 MNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQC---GLP----------YVISGAIASTEK----------   93 (480)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGG---GHH----------HHHTTSSSCGGG----------
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCC---Ccc----------hhhcCCcCCHHH----------
Confidence            6999999999999999999983 3899999999876542111   000          011000000110          


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                        +.....+.+.++.|++++++++|+.+..+++.+. +...        .   +++..++.+|.||+|||...
T Consensus        94 --l~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~-v~~~--------~---~g~~~~~~~d~lviAtG~~p  152 (480)
T 3cgb_A           94 --LIARNVKTFRDKYGIDAKVRHEVTKVDTEKKIVY-AEHT--------K---TKDVFEFSYDRLLIATGVRP  152 (480)
T ss_dssp             --GBSSCHHHHHHTTCCEEESSEEEEEEETTTTEEE-EEET--------T---TCCEEEEECSEEEECCCEEE
T ss_pred             --hhhcCHHHHHhhcCCEEEeCCEEEEEECCCCEEE-EEEc--------C---CCceEEEEcCEEEECCCCcc
Confidence              0001122333356999999999998876665443 2210        0   01223799999999999643

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=98.58  E-value=2.3e-07  Score=88.41  Aligned_cols=100  Identities=18%  Similarity=0.174  Sum_probs=62.1

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhh---------cc--chHHHHHHHhCCCccc
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMV---------VR--KPAHIFLDELGIDYDE  159 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~---------~~--~~~~~~l~~~G~~~~~  159 (356)
                      +||+|||||++|+.+|+.|++. |.+|+|+|+....+......+.+..-.+         .+  ....+.++.+|-..-.
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~-G~~V~liE~~~~~~tp~h~~d~i~eL~CnpSigG~~~~~akGlL~~EIdaLGg~m~~   80 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRL-GVPVRLFEMRPKRMTPAHGTDRFAEIVCSNSLGGEGETNAKGLLQAEMRRAGSLVME   80 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT-TCCEEEECCTTTSCCSSCCSSCTTCCCSCCEEEECSTTCHHHHHHHHHHHHTCHHHH
T ss_pred             CCEEEECchHHHHHHHHHHHHC-CCcEEEEeccCCcCCccccCCCccccccCcCCCccccccchhHHHHHHHHcCChHhh
Confidence            6999999999999999999999 9999999997643322111111000000         00  0123444444432111


Q ss_pred             -------cCCeEEEechHHHHHHHHHHHHcCCCcEEEcC
Q 018414          160 -------QDNYVVIKHAALFTSTIMSKLLARPNVKLFNA  191 (356)
Q Consensus       160 -------~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~  191 (356)
                             ...+....+...|...+.+.+.+.++++++.+
T Consensus        81 ~aD~~~ipAg~al~vDR~~f~~~~~~~le~~pni~l~q~  119 (443)
T 3g5s_A           81 AADLARVPAGGALAVDREEFSGYITERLTGHPLLEVVRE  119 (443)
T ss_dssp             HHHHSEECCTTEEEECHHHHHHHHHHHHHTCTTEEEECS
T ss_pred             hhhhcCCCCCccccCCcHHHHHHHHHHHHcCCCeEEEhh
Confidence                   11223345668888888888888889998865

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=98.58  E-value=2.3e-07  Score=93.11  Aligned_cols=58  Identities=21%  Similarity=0.241  Sum_probs=43.3

Q ss_pred             HHHHHHcCCCcEEEcCeEEEEEEEeC-CeEEEEEEcceeeecccCCCCCCCCeEEEcC-EEEEcCCCCC
Q 018414          176 IMSKLLARPNVKLFNAVAAEDLIVKG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAK-VVVSSCGHDG  242 (356)
Q Consensus       176 l~~~~~~~~gv~i~~~~~v~~i~~~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak-~VI~AtGg~~  242 (356)
                      ++..+.++.|++|++++.|++|+.++ +++.||.+.+      ..   .++..+++|+ .||+|+|+++
T Consensus       214 ~l~~a~~~~~~~i~~~~~V~~i~~~~~~~~~GV~~~~------~~---~g~~~~i~A~k~VIlaaG~~~  273 (546)
T 2jbv_A          214 YIHPIVEQENFTLLTGLRARQLVFDADRRCTGVDIVD------SA---FGHTHRLTARNEVVLSTGAID  273 (546)
T ss_dssp             HTGGGTTCTTEEEECSCEEEEEEECTTSBEEEEEEES------ST---TSCEEEEEEEEEEEECSHHHH
T ss_pred             HHHHHhcCCCcEEEeCCEEEEEEECCCCeEEEEEEEE------CC---CCcEEEEEeCccEEEecCccC
Confidence            34444446799999999999999987 8899998742      10   1234689998 9999999753

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=98.56  E-value=2.2e-07  Score=94.09  Aligned_cols=36  Identities=28%  Similarity=0.539  Sum_probs=33.0

Q ss_pred             CcccEEEECCCHHHHHHHHHhhc-CCCCeEEEEeccCC
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSK-NPNIQIAIIEQSVS  125 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~-~~G~~V~llEk~~~  125 (356)
                      .+||+||||+|++|+.+|.+|++ . +.+|+|||++..
T Consensus        23 ~~~d~iivG~G~~g~~~a~~l~~~~-~~~v~~~e~g~~   59 (587)
T 1gpe_A           23 KTYDYIIAGGGLTGLTVAAKLTENP-KIKVLVIEKGFY   59 (587)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTST-TCCEEEEESSCC
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCC-CCcEEEEecCCc
Confidence            35999999999999999999999 6 999999999853

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.55  E-value=1.1e-07  Score=91.20  Aligned_cols=108  Identities=15%  Similarity=0.160  Sum_probs=69.3

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEec
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKH  168 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~  168 (356)
                      .+..|+|||||+||+++|..|... +.+|+|+|+.+..+.   ...          ....++.. .......     ..+
T Consensus         8 ~~~~~vIvGgG~AGl~aA~~L~~~-~~~itlie~~~~~~y---~~~----------~l~~~l~g-~~~~~~l-----~~~   67 (385)
T 3klj_A            8 KSTKILILGAGPAGFSAAKAALGK-CDDITMINSEKYLPY---YRP----------RLNEIIAK-NKSIDDI-----LIK   67 (385)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHTTT-CSCEEEECSSSSCCB---CGG----------GHHHHHHS-CCCGGGT-----BSS
T ss_pred             CCCCEEEEcCcHHHHHHHHHHhCC-CCEEEEEECCCCCCc---ccC----------hhhHHHcC-CCCHHHc-----cCC
Confidence            357899999999999999999666 999999999876441   100          00111110 0111100     001


Q ss_pred             hHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414          169 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       169 ~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~  241 (356)
                      ..       +.+. +.|++++++++|+.+..++..   |.+.              +..++.+|+||+|||+.
T Consensus        68 ~~-------~~~~-~~~i~~~~~~~V~~id~~~~~---v~~~--------------~g~~~~yd~lvlAtG~~  115 (385)
T 3klj_A           68 KN-------DWYE-KNNIKVITSEFATSIDPNNKL---VTLK--------------SGEKIKYEKLIIASGSI  115 (385)
T ss_dssp             CH-------HHHH-HTTCEEECSCCEEEEETTTTE---EEET--------------TSCEEECSEEEECCCEE
T ss_pred             CH-------HHHH-HCCCEEEeCCEEEEEECCCCE---EEEC--------------CCCEEECCEEEEecCCC
Confidence            11       1122 469999999999999776653   3333              23679999999999964

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.55  E-value=2.7e-07  Score=89.82  Aligned_cols=109  Identities=15%  Similarity=0.199  Sum_probs=67.5

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCC--eEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEe
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIK  167 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~--~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~  167 (356)
                      .+||+|||||++|+++|..|++. |.  +|+|+|+........    ....+.+...         ......   .  ..
T Consensus         4 ~~~vvIIGgG~aGl~aA~~l~~~-g~~~~V~lie~~~~~~~~~----~~l~~~~~~~---------~~~~~~---~--~~   64 (431)
T 1q1r_A            4 NDNVVIVGTGLAGVEVAFGLRAS-GWEGNIRLVGDATVIPHHL----PPLSKAYLAG---------KATAES---L--YL   64 (431)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHT-TCCSEEEEECSCCSCCBCS----GGGGTTTTTT---------CSCSGG---G--BS
T ss_pred             CCcEEEEcCHHHHHHHHHHHHcc-CcCCCEEEEECCCCCCCcC----CCCcHHHhCC---------CCChHH---h--cc
Confidence            48999999999999999999998 87  899999976432110    0000000000         000000   0  00


Q ss_pred             chHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          168 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       168 ~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      .       +.+.+. +.|++++.+++|+.+..++..   +.+.+              ..++.+|.||+|||...
T Consensus        65 ~-------~~~~~~-~~gv~~~~~~~v~~i~~~~~~---v~~~~--------------g~~~~~d~lviAtG~~p  114 (431)
T 1q1r_A           65 R-------TPDAYA-AQNIQLLGGTQVTAINRDRQQ---VILSD--------------GRALDYDRLVLATGGRP  114 (431)
T ss_dssp             S-------CHHHHH-HTTEEEECSCCEEEEETTTTE---EEETT--------------SCEEECSEEEECCCEEE
T ss_pred             c-------CHHHHH-hCCCEEEeCCEEEEEECCCCE---EEECC--------------CCEEECCEEEEcCCCCc
Confidence            0       011222 468999999999988765543   33321              35799999999999754

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.54  E-value=1.1e-07  Score=91.02  Aligned_cols=108  Identities=16%  Similarity=0.222  Sum_probs=65.9

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCC--CeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEe
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPN--IQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIK  167 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G--~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~  167 (356)
                      ++||+|||||++|+++|+.|++. |  .+|+|+|+..  |       +.+.+......         +...        .
T Consensus         4 ~~dvvIIG~G~aGl~aA~~l~~~-g~~~~V~lie~~~--g-------~~~~~~~l~~~---------~~~~--------~   56 (384)
T 2v3a_A            4 RAPLVIIGTGLAGYNLAREWRKL-DGETPLLMITADD--G-------RSYSKPMLSTG---------FSKN--------K   56 (384)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHTT-CSSSCEEEECSSC--C-------CEECGGGGGGT---------TTTT--------C
T ss_pred             CCcEEEECChHHHHHHHHHHHhh-CCCCCEEEEECCC--C-------CccCcccccHH---------HhCC--------C
Confidence            48999999999999999999998 7  5699999874  1       11111111000         0000        0


Q ss_pred             chHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          168 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       168 ~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      ....+.....+.+.++.|++++.+++++.+..++..+   .+.               ..++.+|.+|+|||...
T Consensus        57 ~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v---~~~---------------~~~~~~d~lviAtG~~p  113 (384)
T 2v3a_A           57 DADGLAMAEPGAMAEQLNARILTHTRVTGIDPGHQRI---WIG---------------EEEVRYRDLVLAWGAEP  113 (384)
T ss_dssp             CHHHHEEECHHHHHHHTTCEEECSCCCCEEEGGGTEE---EET---------------TEEEECSEEEECCCEEE
T ss_pred             CHHHhhccCHHHHHHhCCcEEEeCCEEEEEECCCCEE---EEC---------------CcEEECCEEEEeCCCCc
Confidence            0111111112222235689999998888886544432   222               24699999999999643

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=98.53  E-value=4.7e-08  Score=96.62  Aligned_cols=41  Identities=37%  Similarity=0.637  Sum_probs=37.9

Q ss_pred             CcccEEEECCCHHHHHHHHHhhc-CCCCeEEEEeccCCCCCcc
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSK-NPNIQIAIIEQSVSPGGGA  130 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~-~~G~~V~llEk~~~~Gg~~  130 (356)
                      .++||||||||++||+||+.|++ . |++|+|+|++..+||.+
T Consensus         9 ~~~DVvIIGaGisGLsaA~~L~k~~-G~~V~VlE~~~~~GG~~   50 (513)
T 4gde_A            9 ISVDVLVIGAGPTGLGAAKRLNQID-GPSWMIVDSNETPGGLA   50 (513)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHC-CSCEEEEESSSSCCGGG
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhhC-CCCEEEEECCCCCcCCe
Confidence            46999999999999999999997 6 99999999999999865

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.52  E-value=2.9e-07  Score=87.74  Aligned_cols=106  Identities=19%  Similarity=0.197  Sum_probs=65.3

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~  169 (356)
                      ..||+|||||++|+++|..|++. | +|+|+|+....+   +....+ .         ..+. -.+.++...     ...
T Consensus         8 ~~~vvIIGgG~AGl~aA~~l~~~-g-~V~lie~~~~~~---~~~~~l-~---------~~~~-g~~~~~~~~-----~~~   66 (367)
T 1xhc_A            8 GSKVVIVGNGPGGFELAKQLSQT-Y-EVTVIDKEPVPY---YSKPML-S---------HYIA-GFIPRNRLF-----PYS   66 (367)
T ss_dssp             -CEEEEECCSHHHHHHHHHHTTT-S-EEEEECSSSSCC---CCSTTH-H---------HHHT-TSSCGGGGC-----SSC
T ss_pred             CCcEEEECCcHHHHHHHHHHhhc-C-CEEEEECCCCCc---cccchh-H---------HHHh-CCCCHHHhc-----cCC
Confidence            46999999999999999999999 8 999999986432   111000 0         1110 001111100     010


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      .    .+   + ++.|++++.+++|+.+..++..+.   .               +..++.+|++|+|||+..
T Consensus        67 ~----~~---~-~~~~v~~~~g~~v~~id~~~~~V~---~---------------~g~~~~~d~lViATGs~p  113 (367)
T 1xhc_A           67 L----DW---Y-RKRGIEIRLAEEAKLIDRGRKVVI---T---------------EKGEVPYDTLVLATGARA  113 (367)
T ss_dssp             H----HH---H-HHHTEEEECSCCEEEEETTTTEEE---E---------------SSCEEECSEEEECCCEEE
T ss_pred             H----HH---H-HhCCcEEEECCEEEEEECCCCEEE---E---------------CCcEEECCEEEECCCCCC
Confidence            1    11   1 235899999988888865443322   1               135799999999999643

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.52  E-value=1e-07  Score=95.73  Aligned_cols=114  Identities=14%  Similarity=0.064  Sum_probs=69.1

Q ss_pred             ccEEEECCCHHHHHHHHHhhcC-CCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414           91 TDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~-~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~  169 (356)
                      .||+|||||++|+++|+.|++. ++.+|+|+|+.+.++.   ....++          .++  .+ .+...... .... 
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~---~~~~l~----------~~~--~~-~~~~~~~~-~~~~-   63 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSF---ANCGLP----------YHI--SG-EIAQRSAL-VLQT-   63 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSB---CGGGHH----------HHH--TS-SSCCGGGG-BCCC-
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCccc---cccCch----------HHh--cC-CcCChHHh-hccC-
Confidence            4899999999999999999984 3789999999976541   110000          000  01 00000000 0001 


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~  241 (356)
                             .+.+.++.+++++++++|+++..+++.+......            +++..++.+|+||+|||..
T Consensus        64 -------~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~~~------------~g~~~~~~~d~lviAtG~~  116 (565)
T 3ntd_A           64 -------PESFKARFNVEVRVKHEVVAIDRAAKLVTVRRLL------------DGSEYQESYDTLLLSPGAA  116 (565)
T ss_dssp             -------HHHHHHHHCCEEETTEEEEEEETTTTEEEEEETT------------TCCEEEEECSEEEECCCEE
T ss_pred             -------HHHHHHhcCcEEEECCEEEEEECCCCEEEEEecC------------CCCeEEEECCEEEECCCCC
Confidence                   1112223589999999999997766654322111            1124579999999999964

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.51  E-value=1.2e-07  Score=92.72  Aligned_cols=114  Identities=18%  Similarity=0.168  Sum_probs=67.8

Q ss_pred             ccEEEECCCHHHHHHHHHhhcC-CCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414           91 TDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~-~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~  169 (356)
                      +||+|||||++|+++|+.|++. +|.+|+|||+....+.   ....+.          .++...-..+...         
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~---~~~~~~----------~~~~~~~~~~~~~---------   58 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISF---LSAGMQ----------LYLEGKVKDVNSV---------   58 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSB---CGGGHH----------HHHTTSSCCGGGS---------
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCc---ccccch----------hhhcCccCCHHHh---------
Confidence            3899999999999999999983 3899999999875441   110000          0110000001110         


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                         ...+.+.+. +.|++++.++.++.+..+++.+. +...        .   +++..++++|++|+|||...
T Consensus        59 ---~~~~~~~~~-~~gv~~~~~~~v~~i~~~~~~v~-~~~~--------~---~g~~~~~~~d~lviAtG~~p  115 (447)
T 1nhp_A           59 ---RYMTGEKME-SRGVNVFSNTEITAIQPKEHQVT-VKDL--------V---SGEERVENYDKLIISPGAVP  115 (447)
T ss_dssp             ---BSCCHHHHH-HTTCEEEETEEEEEEETTTTEEE-EEET--------T---TCCEEEEECSEEEECCCEEE
T ss_pred             ---hcCCHHHHH-HCCCEEEECCEEEEEeCCCCEEE-EEec--------C---CCceEEEeCCEEEEcCCCCc
Confidence               000112222 35899999999998876665443 2110        0   01224589999999999643

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.51  E-value=4e-07  Score=89.00  Aligned_cols=114  Identities=11%  Similarity=0.080  Sum_probs=68.4

Q ss_pred             ccEEEECCCHHHHHHHHHhhcC-CCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCC-C-ccccCCeEEEe
Q 018414           91 TDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI-D-YDEQDNYVVIK  167 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~-~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~-~-~~~~~~~~~~~  167 (356)
                      +||+|||||++|+++|+.|++. +|.+|+|||+...++...+   .+.          .++.  +. . ++.. ..    
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~---~~~----------~~~~--g~~~~~~~~-~~----   60 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLSC---GIA----------LYLG--KEIKNNDPR-GL----   60 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBCGG---GHH----------HHHT--TCBGGGCGG-GG----
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCcccc---cch----------hhhc--CCcccCCHH-Hh----
Confidence            5899999999999999999983 4899999999875431110   000          0110  00 0 0000 00    


Q ss_pred             chHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          168 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       168 ~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                           ...+.+.+. +.|++++.+++++.+..+++.+. +...        .   +++..++++|++|+|||...
T Consensus        61 -----~~~~~~~~~-~~gv~~~~~~~v~~i~~~~~~v~-v~~~--------~---~g~~~~~~~d~lviAtGs~p  117 (452)
T 2cdu_A           61 -----FYSSPEELS-NLGANVQMRHQVTNVDPETKTIK-VKDL--------I---TNEEKTEAYDKLIMTTGSKP  117 (452)
T ss_dssp             -----BSCCHHHHH-HTTCEEEESEEEEEEEGGGTEEE-EEET--------T---TCCEEEEECSEEEECCCEEE
T ss_pred             -----hhcCHHHHH-HcCCEEEeCCEEEEEEcCCCEEE-EEec--------C---CCceEEEECCEEEEccCCCc
Confidence                 000111222 46899999999998876665443 2110        0   01236799999999999643

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=98.47  E-value=2.8e-07  Score=89.72  Aligned_cols=105  Identities=18%  Similarity=0.337  Sum_probs=66.6

Q ss_pred             ccEEEECCCHHHHHHHHHhhc---CCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEe
Q 018414           91 TDVVVVGAGSAGLSCAYELSK---NPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIK  167 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~---~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~  167 (356)
                      .||+|||||++|+++|+.|++   . |.+|+|||+.+...   +            .+...++.. |..           
T Consensus         5 ~~vvIIGgG~aGl~aA~~L~~~~~~-g~~Vtlie~~~~~~---~------------~~~~~~~~~-g~~-----------   56 (437)
T 3sx6_A            5 AHVVILGAGTGGMPAAYEMKEALGS-GHEVTLISANDYFQ---F------------VPSNPWVGV-GWK-----------   56 (437)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHHGG-GSEEEEECSSSEEE---C------------GGGHHHHHH-TSS-----------
T ss_pred             CcEEEECCcHHHHHHHHHHhccCCC-cCEEEEEeCCCCCc---c------------cCCcccccc-Ccc-----------
Confidence            699999999999999999999   7 99999999986321   0            000011100 100           


Q ss_pred             chHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          168 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       168 ~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      ...++...+.+.+ ++.|++++.+ +|+.+..++..   |.+.              +..++.+|+||+|+|...
T Consensus        57 ~~~~~~~~l~~~~-~~~gv~~~~~-~v~~id~~~~~---V~~~--------------~g~~i~~d~lviAtG~~~  112 (437)
T 3sx6_A           57 ERDDIAFPIRHYV-ERKGIHFIAQ-SAEQIDAEAQN---ITLA--------------DGNTVHYDYLMIATGPKL  112 (437)
T ss_dssp             CHHHHEEECHHHH-HTTTCEEECS-CEEEEETTTTE---EEET--------------TSCEEECSEEEECCCCEE
T ss_pred             CHHHHHHHHHHHH-HHCCCEEEEe-EEEEEEcCCCE---EEEC--------------CCCEEECCEEEECCCCCc
Confidence            1111111222333 3679999864 88888765553   3333              135799999999999643

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.46  E-value=1.9e-06  Score=82.91  Aligned_cols=98  Identities=23%  Similarity=0.329  Sum_probs=76.5

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.|+|||+|..|+.+|..|.+. |.+|+++|+.+.+....                                     ...
T Consensus       143 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtvv~~~~~~~~~~-------------------------------------~~~  184 (404)
T 3fg2_P          143 KHVVVIGAGFIGLEFAATARAK-GLEVDVVELAPRVMARV-------------------------------------VTP  184 (404)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSTTTTT-------------------------------------SCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCCcchhhc-------------------------------------cCH
Confidence            5799999999999999999999 99999999886432100                                     012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~  241 (356)
                      .+.+.+.+.+. +.|++++++++|+++..+++++.++.+.+              +.++.+|.||+|+|..
T Consensus       185 ~~~~~l~~~l~-~~GV~i~~~~~v~~i~~~~~~v~~V~~~d--------------G~~i~aD~Vv~a~G~~  240 (404)
T 3fg2_P          185 EISSYFHDRHS-GAGIRMHYGVRATEIAAEGDRVTGVVLSD--------------GNTLPCDLVVVGVGVI  240 (404)
T ss_dssp             HHHHHHHHHHH-HTTCEEECSCCEEEEEEETTEEEEEEETT--------------SCEEECSEEEECCCEE
T ss_pred             HHHHHHHHHHH-hCCcEEEECCEEEEEEecCCcEEEEEeCC--------------CCEEEcCEEEECcCCc
Confidence            33444445454 67999999999999998888888888753              3679999999999944

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=98.45  E-value=6.7e-08  Score=94.87  Aligned_cols=39  Identities=33%  Similarity=0.504  Sum_probs=35.9

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCC
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG  128 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg  128 (356)
                      ..+||+|||||++|+++|+.|++. |++|+|+|+...+||
T Consensus       121 ~~~~V~IIGgGpAGl~aA~~L~~~-G~~V~v~e~~~~~GG  159 (456)
T 2vdc_G          121 LGLSVGVIGAGPAGLAAAEELRAK-GYEVHVYDRYDRMGG  159 (456)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHH-TCCEEEECSSSSCST
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCCCCC
Confidence            358999999999999999999999 999999999987765

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=98.43  E-value=7.9e-08  Score=92.66  Aligned_cols=109  Identities=18%  Similarity=0.183  Sum_probs=66.6

Q ss_pred             ccEEEECCCHHHHHHHHHhhc---CCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEe
Q 018414           91 TDVVVVGAGSAGLSCAYELSK---NPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIK  167 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~---~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~  167 (356)
                      .||+|||||++|+++|+.|++   . |.+|+|||+....+...    ....              ..........+.  .
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~-g~~V~vie~~~~~~~~~----~~~~--------------~~~~~~~~~~~~--~   60 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGS-KADVKVINKSRFSYFRP----ALPH--------------VAIGVRDVDELK--V   60 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGG-GSEEEEEESSSEEEECC----SSCC--------------CCSSCCCCCCEE--E
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCC-CCeEEEEeCCCCceecc----chhh--------------cccCCcCHHHHH--H
Confidence            379999999999999999999   7 99999999987432110    0000              000000001111  1


Q ss_pred             chHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          168 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       168 ~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      .       +.+.+ ++.|++++.+ +|+.+..++..+   .+.+      .    .++..++.+|.||+|+|...
T Consensus        61 ~-------~~~~~-~~~gv~~~~~-~v~~i~~~~~~V---~~~~------g----~~~~~~~~~d~lViAtG~~~  113 (409)
T 3h8l_A           61 D-------LSEAL-PEKGIQFQEG-TVEKIDAKSSMV---YYTK------P----DGSMAEEEYDYVIVGIGAHL  113 (409)
T ss_dssp             E-------HHHHT-GGGTCEEEEC-EEEEEETTTTEE---EEEC------T----TSCEEEEECSEEEECCCCEE
T ss_pred             H-------HHHHH-hhCCeEEEEe-eEEEEeCCCCEE---EEcc------C----CcccceeeCCEEEECCCCCc
Confidence            1       12222 3568999988 888887655543   2321      0    01235699999999999743

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=98.42  E-value=4.5e-07  Score=87.58  Aligned_cols=105  Identities=19%  Similarity=0.168  Sum_probs=67.2

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCC--eEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEe
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIK  167 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~--~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~  167 (356)
                      ++||+|||||++|+++|+.|++. |.  +|+|+|+....+.   .. ....+        .++... . .+.   ..   
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~-g~~~~V~lie~~~~~~~---~~-~~~~~--------~~~~~~-~-~~~---~~---   65 (408)
T 2gqw_A            7 KAPVVVLGAGLASVSFVAELRQA-GYQGLITVVGDEAERPY---DR-PPLSK--------DFMAHG-D-AEK---IR---   65 (408)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHH-TCCSCEEEEESSCSCCB---CS-GGGGT--------HHHHHC-C-GGG---SB---
T ss_pred             CCcEEEECChHHHHHHHHHHHcc-CCCCeEEEEECCCCCcc---cC-CCCCH--------HHhCCC-c-hhh---hh---
Confidence            58999999999999999999998 77  5999999865331   10 00000        111110 0 100   00   


Q ss_pred             chHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          168 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       168 ~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                               ++. .++.|++++.+++|+.+..++..   +.+.+              ..++.+|+||+|||...
T Consensus        66 ---------~~~-~~~~~v~~~~~~~v~~i~~~~~~---v~~~~--------------g~~~~~d~lviAtG~~~  113 (408)
T 2gqw_A           66 ---------LDC-KRAPEVEWLLGVTAQSFDPQAHT---VALSD--------------GRTLPYGTLVLATGAAP  113 (408)
T ss_dssp             ---------CCC-TTSCSCEEEETCCEEEEETTTTE---EEETT--------------SCEEECSEEEECCCEEE
T ss_pred             ---------HHH-HHHCCCEEEcCCEEEEEECCCCE---EEECC--------------CCEEECCEEEECCCCCC
Confidence                     001 23679999999989988655443   33321              35799999999999643

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.41  E-value=1.5e-06  Score=84.75  Aligned_cols=98  Identities=27%  Similarity=0.365  Sum_probs=72.6

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~  169 (356)
                      ..+++|||+|++|+.+|..|++. |.+|+|+|+.+.+....                                     ..
T Consensus       149 ~~~vvIiG~G~~g~e~A~~l~~~-g~~Vtlv~~~~~~l~~~-------------------------------------~~  190 (447)
T 1nhp_A          149 VNNVVVIGSGYIGIEAAEAFAKA-GKKVTVIDILDRPLGVY-------------------------------------LD  190 (447)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSSTTTTT-------------------------------------CC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHC-CCeEEEEecCccccccc-------------------------------------CC
Confidence            47999999999999999999999 99999999986432100                                     01


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      .++.+.+.+.+. +.|++++++++|+++..+ +++..+...               ..++.+|.||+|+|...
T Consensus       191 ~~~~~~l~~~l~-~~gv~i~~~~~v~~i~~~-~~v~~v~~~---------------~~~i~~d~vi~a~G~~p  246 (447)
T 1nhp_A          191 KEFTDVLTEEME-ANNITIATGETVERYEGD-GRVQKVVTD---------------KNAYDADLVVVAVGVRP  246 (447)
T ss_dssp             HHHHHHHHHHHH-TTTEEEEESCCEEEEECS-SBCCEEEES---------------SCEEECSEEEECSCEEE
T ss_pred             HHHHHHHHHHHH-hCCCEEEcCCEEEEEEcc-CcEEEEEEC---------------CCEEECCEEEECcCCCC
Confidence            334445555554 679999999999998754 444444432               25799999999999543

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=98.41  E-value=2.7e-07  Score=94.85  Aligned_cols=39  Identities=31%  Similarity=0.537  Sum_probs=36.0

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG  129 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~  129 (356)
                      .+||+|||||++|+.+|+.|++. |++|+|+|+...+||.
T Consensus       373 ~~~vvIIGgG~AGl~aA~~l~~~-g~~V~lie~~~~~gg~  411 (671)
T 1ps9_A          373 KKNLAVVGAGPAGLAFAINAAAR-GHQVTLFDAHSEIGGQ  411 (671)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTT-TCEEEEEESSSSSCTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCCCCCCe
Confidence            58999999999999999999999 9999999999877764

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=98.41  E-value=1.9e-07  Score=91.40  Aligned_cols=41  Identities=29%  Similarity=0.361  Sum_probs=38.3

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~  130 (356)
                      .++||||||+|++||++|+.|+++ |++|+|+|++..+||.+
T Consensus        10 ~~~dvvVIGaG~~GL~aA~~La~~-G~~V~vlE~~~~~GG~~   50 (453)
T 2bcg_G           10 TDYDVIVLGTGITECILSGLLSVD-GKKVLHIDKQDHYGGEA   50 (453)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSCGGG
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCCCCCccc
Confidence            368999999999999999999999 99999999999998764

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.40  E-value=4.3e-06  Score=77.14  Aligned_cols=101  Identities=18%  Similarity=0.230  Sum_probs=75.3

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.|+|||+|..|+-+|..|++. |.+|+++++...+..                                        ..
T Consensus       146 ~~v~ViG~G~~g~e~A~~l~~~-g~~Vtlv~~~~~~~~----------------------------------------~~  184 (320)
T 1trb_A          146 QKVAVIGGGNTAVEEALYLSNI-ASEVHLIHRRDGFRA----------------------------------------EK  184 (320)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTT-SSEEEEECSSSSCCC----------------------------------------CH
T ss_pred             CeEEEECCCHHHHHHHHHHHhc-CCeEEEEEeCCcccc----------------------------------------CH
Confidence            5799999999999999999999 999999998753210                                        02


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~  241 (356)
                      .+.+.+.+.+. +.|++++++++++++..+++++.++.+.+.      .+  .++..++.+|.||+|+|..
T Consensus       185 ~~~~~l~~~l~-~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~------~~--~g~~~~i~~D~vv~a~G~~  246 (320)
T 1trb_A          185 ILIKRLMDKVE-NGNIILHTNRTLEEVTGDQMGVTGVRLRDT------QN--SDNIESLDVAGLFVAIGHS  246 (320)
T ss_dssp             HHHHHHHHHHH-TSSEEEECSCEEEEEEECSSSEEEEEEECC------TT--CCCCEEEECSEEEECSCEE
T ss_pred             HHHHHHHHhcc-cCCeEEEcCceeEEEEcCCCceEEEEEEec------cC--CCceEEEEcCEEEEEeCCC
Confidence            23334455554 679999999999999877767777776420      00  0234689999999999944

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=98.39  E-value=6.2e-07  Score=89.07  Aligned_cols=35  Identities=23%  Similarity=0.330  Sum_probs=32.9

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS  125 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~  125 (356)
                      +||++|||+|++|+.+|++|++. |.+|+|||++..
T Consensus         5 ~~d~~iiG~G~~g~~~a~~l~~~-~~~v~~~e~~~~   39 (504)
T 1n4w_A            5 YVPAVVIGTGYGAAVSALRLGEA-GVQTLMLEMGQL   39 (504)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhC-CCcEEEEeCCCC
Confidence            59999999999999999999998 999999999863

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.38  E-value=3.8e-07  Score=87.86  Aligned_cols=106  Identities=19%  Similarity=0.236  Sum_probs=65.5

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCC--eEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEec
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKH  168 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~--~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~  168 (356)
                      .||+|||||++|+++|+.|++. |.  +|+|+|+.+......   ..+...++..          ....   ..+  ...
T Consensus         2 k~vvIIGaG~aGl~aA~~L~~~-g~~~~V~lie~~~~~~y~~---~~l~~~~l~~----------~~~~---~~~--~~~   62 (404)
T 3fg2_P            2 DTVLIAGAGHAGFQVAVSLRQA-KYPGRIALINDEKHLPYQR---PPLSKAYLKS----------GGDP---NSL--MFR   62 (404)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT-TCCSCEEEECCSSSSSBCS---GGGGTGGGGS----------CCCT---TSS--BSS
T ss_pred             CCEEEEcChHHHHHHHHHHHhh-CcCCCEEEEeCCCCCCCCC---ccCCHHHHCC----------CCCH---HHc--cCC
Confidence            4899999999999999999998 88  899999987433110   0011000000          0000   000  001


Q ss_pred             hHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414          169 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       169 ~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~  241 (356)
                      ..       +.+. +.+++++. ++|+.+..++..   +.+.              +..++.+|.+|+|||..
T Consensus        63 ~~-------~~~~-~~~i~~~~-~~v~~id~~~~~---v~~~--------------~g~~~~~d~lvlAtG~~  109 (404)
T 3fg2_P           63 PE-------KFFQ-DQAIELIS-DRMVSIDREGRK---LLLA--------------SGTAIEYGHLVLATGAR  109 (404)
T ss_dssp             CH-------HHHH-HTTEEEEC-CCEEEEETTTTE---EEES--------------SSCEEECSEEEECCCEE
T ss_pred             CH-------HHHH-hCCCEEEE-EEEEEEECCCCE---EEEC--------------CCCEEECCEEEEeeCCC
Confidence            11       1122 46899999 889988765553   3332              13678999999999964

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.38  E-value=2.9e-07  Score=88.92  Aligned_cols=106  Identities=18%  Similarity=0.266  Sum_probs=67.0

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCe--EEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEec
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQ--IAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKH  168 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~--V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~  168 (356)
                      .||+|||||++|+++|+.|++. |.+  |+|+|+.+..+..   ...+..         .++. ......   ..   .+
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~-g~~~~V~li~~~~~~~y~---~~~l~~---------~~~~-g~~~~~---~~---~~   62 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAE-GFEGRISLIGDEPHLPYD---RPSLSK---------AVLD-GSLERP---PI---LA   62 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCCSEEEEEECSSSSSBC---SGGGGT---------HHHH-TSSSSC---CB---SS
T ss_pred             CCEEEEcccHHHHHHHHHHHcc-CcCCeEEEEECCCCCCcC---CccccH---------HHhC-CCCCHH---Hh---cC
Confidence            4899999999999999999998 877  9999998754311   000000         0111 011110   11   11


Q ss_pred             hHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414          169 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       169 ~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~  241 (356)
                      ...+       + ++.+++++.+++|+.+..++..   +.+.              +..++.+|.+|+|||+.
T Consensus        63 ~~~~-------~-~~~~i~~~~~~~v~~id~~~~~---v~~~--------------~g~~~~~d~lvlAtG~~  110 (410)
T 3ef6_A           63 EADW-------Y-GEARIDMLTGPEVTALDVQTRT---ISLD--------------DGTTLSADAIVIATGSR  110 (410)
T ss_dssp             CTTH-------H-HHTTCEEEESCCEEEEETTTTE---EEET--------------TSCEEECSEEEECCCEE
T ss_pred             CHHH-------H-HHCCCEEEeCCEEEEEECCCCE---EEEC--------------CCCEEECCEEEEccCCc
Confidence            1111       1 1458999999999998765543   2332              13579999999999965

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.36  E-value=4.4e-06  Score=79.74  Aligned_cols=98  Identities=19%  Similarity=0.210  Sum_probs=73.2

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -+++|||+|..|+.+|..|++. |.+|+++|+.+.+....                                     ...
T Consensus       146 ~~v~ViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~~~~~-------------------------------------~~~  187 (384)
T 2v3a_A          146 RRVLLLGAGLIGCEFANDLSSG-GYQLDVVAPCEQVMPGL-------------------------------------LHP  187 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSSSSTTT-------------------------------------SCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-CCeEEEEecCcchhhcc-------------------------------------cCH
Confidence            5799999999999999999999 99999999976432100                                     013


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      .+.+.+.+.+. +.|++++++++|+++..+++.+ .+.+.+              +.++.+|.||+|+|...
T Consensus       188 ~~~~~l~~~l~-~~gv~i~~~~~v~~i~~~~~~~-~v~~~~--------------g~~i~~d~vv~a~G~~p  243 (384)
T 2v3a_A          188 AAAKAVQAGLE-GLGVRFHLGPVLASLKKAGEGL-EAHLSD--------------GEVIPCDLVVSAVGLRP  243 (384)
T ss_dssp             HHHHHHHHHHH-TTTCEEEESCCEEEEEEETTEE-EEEETT--------------SCEEEESEEEECSCEEE
T ss_pred             HHHHHHHHHHH-HcCCEEEeCCEEEEEEecCCEE-EEEECC--------------CCEEECCEEEECcCCCc
Confidence            33445555554 6799999999999998776643 344431              36799999999999543

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=98.35  E-value=3.5e-07  Score=88.29  Aligned_cols=41  Identities=29%  Similarity=0.558  Sum_probs=37.6

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCC-CeEEEEeccCCCCCcc
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPN-IQIAIIEQSVSPGGGA  130 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G-~~V~llEk~~~~Gg~~  130 (356)
                      .++||+|||||++||+||+.|++. | .+|+|+|+...+||.+
T Consensus         5 ~~~~v~IIGaG~aGl~aA~~L~~~-g~~~v~v~E~~~~~GG~~   46 (424)
T 2b9w_A            5 KDSRIAIIGAGPAGLAAGMYLEQA-GFHDYTILERTDHVGGKC   46 (424)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHT-TCCCEEEECSSSCSSTTC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhC-CCCcEEEEECCCCCCCcc
Confidence            358999999999999999999999 9 9999999999888754

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=98.33  E-value=2.7e-07  Score=91.77  Aligned_cols=41  Identities=34%  Similarity=0.533  Sum_probs=38.0

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCC-CeEEEEeccCCCCCcc
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPN-IQIAIIEQSVSPGGGA  130 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G-~~V~llEk~~~~Gg~~  130 (356)
                      ..+||+|||||++||+||+.|++. | .+|+|+|+...+||..
T Consensus         7 ~~~~VvIIGaG~aGL~AA~~L~~~-G~~~V~VlEa~~riGGr~   48 (516)
T 1rsg_A            7 AKKKVIIIGAGIAGLKAASTLHQN-GIQDCLVLEARDRVGGRL   48 (516)
T ss_dssp             EEEEEEEECCBHHHHHHHHHHHHT-TCCSEEEECSSSSSBTTC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhc-CCCCEEEEeCCCCCCCce
Confidence            358999999999999999999999 9 9999999999998865

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.32  E-value=3.9e-06  Score=81.54  Aligned_cols=98  Identities=16%  Similarity=0.197  Sum_probs=73.3

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.|+|||+|..|+.+|..|++. |.+|+++|+.+.+....                                     ...
T Consensus       150 ~~vvViGgG~~g~E~A~~l~~~-G~~Vtlv~~~~~~l~~~-------------------------------------~~~  191 (431)
T 1q1r_A          150 NRLVVIGGGYIGLEVAATAIKA-NMHVTLLDTAARVLERV-------------------------------------TAP  191 (431)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSTTTTT-------------------------------------SCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-CCEEEEEEeCCccccch-------------------------------------hhH
Confidence            5799999999999999999999 99999999876432100                                     012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEE--eCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIV--KGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~--~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~  241 (356)
                      .+...+.+.+. +.|++++++++++++..  +++++..+.+.+              +.++.+|.||+|+|..
T Consensus       192 ~~~~~l~~~l~-~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~--------------G~~i~~D~Vv~a~G~~  249 (431)
T 1q1r_A          192 PVSAFYEHLHR-EAGVDIRTGTQVCGFEMSTDQQKVTAVLCED--------------GTRLPADLVIAGIGLI  249 (431)
T ss_dssp             HHHHHHHHHHH-HHTCEEECSCCEEEEEECTTTCCEEEEEETT--------------SCEEECSEEEECCCEE
T ss_pred             HHHHHHHHHHH-hCCeEEEeCCEEEEEEeccCCCcEEEEEeCC--------------CCEEEcCEEEECCCCC
Confidence            23334444444 56999999999999987  566776776642              3679999999999944

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.31  E-value=8.5e-06  Score=79.89  Aligned_cols=102  Identities=13%  Similarity=0.114  Sum_probs=72.9

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -+|+|||||..|+.+|..|++. |.+|+|+|+.+.+...                                      ...
T Consensus       170 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~l~~--------------------------------------~~~  210 (464)
T 2eq6_A          170 KRLLVIGGGAVGLELGQVYRRL-GAEVTLIEYMPEILPQ--------------------------------------GDP  210 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSSSTT--------------------------------------SCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCeEEEEEcCCccccc--------------------------------------cCH
Confidence            5799999999999999999999 9999999998643210                                      012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      ++.+.+.+.+. +.|++++++++|+++..+++.+. +....      ..   .++..++.+|.||+|+|...
T Consensus       211 ~~~~~l~~~l~-~~gV~i~~~~~v~~i~~~~~~~~-v~~~~------~~---~g~~~~i~~D~vv~a~G~~p  271 (464)
T 2eq6_A          211 ETAALLRRALE-KEGIRVRTKTKAVGYEKKKDGLH-VRLEP------AE---GGEGEEVVVDKVLVAVGRKP  271 (464)
T ss_dssp             HHHHHHHHHHH-HTTCEEECSEEEEEEEEETTEEE-EEEEE------TT---CCSCEEEEESEEEECSCEEE
T ss_pred             HHHHHHHHHHH-hcCCEEEcCCEEEEEEEeCCEEE-EEEee------cC---CCceeEEEcCEEEECCCccc
Confidence            33444455554 57999999999999987766543 33320      00   01234799999999999554

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.30  E-value=5.4e-06  Score=80.92  Aligned_cols=98  Identities=12%  Similarity=0.137  Sum_probs=73.3

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.++|||+|..|+.+|..|++. |.+|+++|+.+.+-...                                     ...
T Consensus       150 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~l~~~-------------------------------------~~~  191 (452)
T 2cdu_A          150 KTITIIGSGYIGAELAEAYSNQ-NYNVNLIDGHERVLYKY-------------------------------------FDK  191 (452)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTT-TCEEEEEESSSSTTTTT-------------------------------------SCH
T ss_pred             CeEEEECcCHHHHHHHHHHHhc-CCEEEEEEcCCchhhhh-------------------------------------hhh
Confidence            4799999999999999999999 99999999876421100                                     012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      .+.+.+.+.+. +.|++++++++|+++..+++++..+..+               ..++.+|.||+|+|...
T Consensus       192 ~~~~~l~~~l~-~~Gv~i~~~~~v~~i~~~~~~v~~v~~~---------------g~~i~~D~vv~a~G~~p  247 (452)
T 2cdu_A          192 EFTDILAKDYE-AHGVNLVLGSKVAAFEEVDDEIITKTLD---------------GKEIKSDIAILCIGFRP  247 (452)
T ss_dssp             HHHHHHHHHHH-HTTCEEEESSCEEEEEEETTEEEEEETT---------------SCEEEESEEEECCCEEE
T ss_pred             hHHHHHHHHHH-HCCCEEEcCCeeEEEEcCCCeEEEEEeC---------------CCEEECCEEEECcCCCC
Confidence            33444455554 6799999999999998767776555431               36799999999999543

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=98.30  E-value=3.7e-07  Score=87.93  Aligned_cols=42  Identities=29%  Similarity=0.496  Sum_probs=37.8

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW  131 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~  131 (356)
                      ++||+|||||++||++|+.|++++|.+|+|+|++..+||.++
T Consensus         7 ~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~GG~~~   48 (399)
T 1v0j_A            7 RFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAY   48 (399)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSGGGC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCeee
Confidence            589999999999999999999854899999999998887753

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=98.30  E-value=3.4e-07  Score=90.74  Aligned_cols=128  Identities=12%  Similarity=0.150  Sum_probs=69.7

Q ss_pred             cccEEEECCCHHHHHHHHHhhc-CCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHh---CCCccccCCeEE
Q 018414           90 DTDVVVVGAGSAGLSCAYELSK-NPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDEL---GIDYDEQDNYVV  165 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~-~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~---G~~~~~~~~~~~  165 (356)
                      ++||+|||||++|+++|..|.+ .++.+|+|||+....+...    +.+.+.+............   +++..... . .
T Consensus        11 ~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~y~r----~~lsk~l~~~~~~~~~~~~~~~~~~~~~~~-~-~   84 (493)
T 1m6i_A           11 HVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMR----PPLSKELWFSDDPNVTKTLRFKQWNGKERS-I-Y   84 (493)
T ss_dssp             EEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCS----GGGGTGGGCC--CTHHHHCEEECTTSCEEE-S-B
T ss_pred             cCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCC----CCCCHHhhcCCccchhhccccccccccccc-c-c
Confidence            5899999999999999988865 2389999999987554211    1112212111100011111   11100000 0 0


Q ss_pred             EechHHHH--HHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          166 IKHAALFT--STIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       166 ~~~~~~~~--~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      +.....+.  ..+. .+ .+.|++++.+++|+.+..++..   |.+.+              ..++.+|.||+|||+..
T Consensus        85 ~~~~~~~~~~~~l~-~~-~~~gv~~~~g~~v~~id~~~~~---V~~~~--------------g~~i~yd~lviATGs~p  144 (493)
T 1m6i_A           85 FQPPSFYVSAQDLP-HI-ENGGVAVLTGKKVVQLDVRDNM---VKLND--------------GSQITYEKCLIATGGTP  144 (493)
T ss_dssp             SSCGGGSBCTTTTT-TS-TTCEEEEEETCCEEEEEGGGTE---EEETT--------------SCEEEEEEEEECCCEEE
T ss_pred             ccchHhhcchhhhh-hh-hcCCeEEEcCCEEEEEECCCCE---EEECC--------------CCEEECCEEEECCCCCC
Confidence            00000000  0111 11 2568999999999988765543   33321              35789999999999643

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=98.29  E-value=1.4e-07  Score=92.78  Aligned_cols=38  Identities=34%  Similarity=0.565  Sum_probs=34.3

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCC--CeEEEEeccCCCCC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPN--IQIAIIEQSVSPGG  128 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G--~~V~llEk~~~~Gg  128 (356)
                      .+||+|||+|++|+.+|..|++. |  .+|+|+|+.+.++|
T Consensus         6 ~~~vvIIG~G~aGl~aA~~l~~~-g~~~~V~vie~~~~~gg   45 (460)
T 1cjc_A            6 TPQICVVGSGPAGFYTAQHLLKH-HSRAHVDIYEKQLVPFG   45 (460)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHH-CSSCEEEEECSSSSSCT
T ss_pred             CceEEEECcCHHHHHHHHHHHhc-CCCCCEEEEeCCCcCCc
Confidence            47999999999999999999997 7  99999999987653

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.29  E-value=4.5e-06  Score=81.55  Aligned_cols=98  Identities=14%  Similarity=0.159  Sum_probs=72.2

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.|+|||+|.+|+.+|..|++. |.+|+|+|+.+.+...                                      ...
T Consensus       168 ~~vvIiGgG~~g~e~A~~l~~~-g~~V~lv~~~~~~l~~--------------------------------------~~~  208 (455)
T 2yqu_A          168 KRLIVVGGGVIGLELGVVWHRL-GAEVIVLEYMDRILPT--------------------------------------MDL  208 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSSCTT--------------------------------------SCH
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCEEEEEecCCccccc--------------------------------------cCH
Confidence            5799999999999999999999 9999999998642110                                      012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      .+.+.+.+.+. +.|++++++++|+++..+++.+. +...              +..++.+|.||+|+|....
T Consensus       209 ~~~~~l~~~l~-~~Gv~i~~~~~V~~i~~~~~~v~-v~~~--------------~g~~i~~D~vv~A~G~~p~  265 (455)
T 2yqu_A          209 EVSRAAERVFK-KQGLTIRTGVRVTAVVPEAKGAR-VELE--------------GGEVLEADRVLVAVGRRPY  265 (455)
T ss_dssp             HHHHHHHHHHH-HHTCEEECSCCEEEEEEETTEEE-EEET--------------TSCEEEESEEEECSCEEEC
T ss_pred             HHHHHHHHHHH-HCCCEEEECCEEEEEEEeCCEEE-EEEC--------------CCeEEEcCEEEECcCCCcC
Confidence            33344445554 56999999999999987766532 3332              1367999999999996543

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=98.28  E-value=4.7e-07  Score=88.18  Aligned_cols=40  Identities=40%  Similarity=0.659  Sum_probs=37.4

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~  130 (356)
                      ++||+|||||++||+||+.|++. |++|+|+|++..+||.+
T Consensus         5 ~~~v~iiG~G~~Gl~aA~~l~~~-g~~v~v~E~~~~~GG~~   44 (453)
T 2yg5_A            5 QRDVAIVGAGPSGLAAATALRKA-GLSVAVIEARDRVGGRT   44 (453)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSCTTC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHC-CCcEEEEECCCCCCCce
Confidence            58999999999999999999999 99999999998888765

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=98.27  E-value=3.3e-07  Score=98.56  Aligned_cols=39  Identities=33%  Similarity=0.546  Sum_probs=35.5

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccCCCCCc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSVSPGGG  129 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~~~Gg~  129 (356)
                      .+||+|||||++|+++|+.|++. |+ +|+|+|+...+||.
T Consensus       187 ~~~VvVIGgGpAGl~aA~~L~~~-G~~~Vtv~E~~~~~GG~  226 (1025)
T 1gte_A          187 SAKIALLGAGPASISCASFLARL-GYSDITIFEKQEYVGGL  226 (1025)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHT-TCCCEEEEESSSSCSTH
T ss_pred             CCEEEEECccHHHHHHHHHHHhc-CCCcEEEEeCCCCCCcc
Confidence            57999999999999999999999 99 79999998777763

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=98.27  E-value=3.8e-06  Score=83.39  Aligned_cols=123  Identities=20%  Similarity=0.330  Sum_probs=69.0

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhC-CCccccCCeEEEec
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELG-IDYDEQDNYVVIKH  168 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G-~~~~~~~~~~~~~~  168 (356)
                      +..|||||||.+|+.+|..|++. +++|+|||+.+..         ++..++.+-.       .| ++...   .  ...
T Consensus        42 KprVVIIGgG~AGl~~A~~L~~~-~~~VtLId~~~~~---------~~~PlL~~va-------~G~l~~~~---i--~~p   99 (502)
T 4g6h_A           42 KPNVLILGSGWGAISFLKHIDTK-KYNVSIISPRSYF---------LFTPLLPSAP-------VGTVDEKS---I--IEP   99 (502)
T ss_dssp             SCEEEEECSSHHHHHHHHHSCTT-TCEEEEEESSSEE---------ECGGGGGGTT-------TTSSCGGG---G--EEE
T ss_pred             CCCEEEECCcHHHHHHHHHhhhC-CCcEEEECCCCCc---------ccccchhHHh-------hccccHHH---h--hhh
Confidence            35799999999999999999998 9999999998531         1111110000       00 00000   0  000


Q ss_pred             hHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeec----ccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          169 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSM----NHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       169 ~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~----~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                         + ..+.  ..++.+++++.+ +|++|..++..|...... .....    +......++..++.+|++|+|+|+..
T Consensus       100 ---~-~~~~--~~~~~~v~~~~~-~v~~ID~~~k~V~l~~~~-~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~~  169 (502)
T 4g6h_A          100 ---I-VNFA--LKKKGNVTYYEA-EATSINPDRNTVTIKSLS-AVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEP  169 (502)
T ss_dssp             ---H-HHHH--TTCSSCEEEEEE-EEEEEEGGGTEEEEEEEE-EEEECSSSCCCCCCCTTCCEEEECSEEEECCCCEE
T ss_pred             ---H-HHHH--HhhcCCeEEEEE-EEEEEEhhhCEEEEeecc-cceeecccccccccccCCceEEeCCEEEEcCCccc
Confidence               0 1111  123567888876 788887766654321110 00000    00001123467899999999999754

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=98.27  E-value=1.5e-06  Score=84.51  Aligned_cols=105  Identities=28%  Similarity=0.432  Sum_probs=65.4

Q ss_pred             cEEEECCCHHHHHHHHHhhcC-CCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           92 DVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~-~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      .|||||||++|+++|..|++. ++.+|+|||+.+...         +      .+...++-.-....+.   ... .   
T Consensus         4 ~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~---------~------~p~l~~v~~g~~~~~~---i~~-~---   61 (430)
T 3hyw_A            4 HVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFG---------F------TPAFPHLAMGWRKFED---ISV-P---   61 (430)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEE---------C------GGGHHHHHHTCSCGGG---SEE-E---
T ss_pred             cEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCc---------c------CccHHHHhcCCCCHHH---hhh-c---
Confidence            699999999999999999884 358999999986311         0      0111111111111111   000 0   


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                            ++.+.++.|++++.+ +|+.|..++..|   .+.              ++.++.+|++|+|||...
T Consensus        62 ------~~~~~~~~gv~~i~~-~v~~Id~~~~~V---~~~--------------~g~~i~YD~LViAtG~~~  109 (430)
T 3hyw_A           62 ------LAPLLPKFNIEFINE-KAESIDPDANTV---TTQ--------------SGKKIEYDYLVIATGPKL  109 (430)
T ss_dssp             ------STTTGGGGTEEEECS-CEEEEETTTTEE---EET--------------TCCEEECSEEEECCCCEE
T ss_pred             ------HHHHHHHCCcEEEEe-EEEEEECCCCEE---EEC--------------CCCEEECCEEEEeCCCCc
Confidence                  011223568999887 788887666643   343              236799999999999753

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.26  E-value=5.1e-06  Score=81.16  Aligned_cols=98  Identities=12%  Similarity=0.130  Sum_probs=71.4

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.|+|||+|..|+.+|..|++. |.+|+|+|+.+.+...                                      ...
T Consensus       168 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~l~~--------------------------------------~~~  208 (450)
T 1ges_A          168 ERVAVVGAGYIGVELGGVINGL-GAKTHLFEMFDAPLPS--------------------------------------FDP  208 (450)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSSSTT--------------------------------------SCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhc-CCEEEEEEeCCchhhh--------------------------------------hhH
Confidence            4799999999999999999999 9999999987642110                                      002


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      .+.+.+.+.+. +.|++++++++|+++..+++....+.+.+              +.++.+|.||+|+|...
T Consensus       209 ~~~~~l~~~l~-~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~--------------g~~i~~D~vv~a~G~~p  265 (450)
T 1ges_A          209 MISETLVEVMN-AEGPQLHTNAIPKAVVKNTDGSLTLELED--------------GRSETVDCLIWAIGREP  265 (450)
T ss_dssp             HHHHHHHHHHH-HHSCEEECSCCEEEEEECTTSCEEEEETT--------------SCEEEESEEEECSCEEE
T ss_pred             HHHHHHHHHHH-HCCCEEEeCCEEEEEEEeCCcEEEEEECC--------------CcEEEcCEEEECCCCCc
Confidence            23344445454 56999999999999987654323344432              34799999999999543

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.26  E-value=1.1e-05  Score=78.81  Aligned_cols=101  Identities=17%  Similarity=0.242  Sum_probs=72.8

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~  169 (356)
                      ..+|+|||+|..|+.+|..|++. |.+|+|+|+.+.+...                                      ..
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~l~~--------------------------------------~~  210 (455)
T 1ebd_A          170 PKSLVVIGGGYIGIELGTAYANF-GTKVTILEGAGEILSG--------------------------------------FE  210 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSSSSTT--------------------------------------SC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc-CCcEEEEEcCCccccc--------------------------------------cC
Confidence            35899999999999999999999 9999999998643210                                      01


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      .++...+.+.+. +.|++++++++++++..+++.+. +....           +++..++.+|.||+|+|...
T Consensus       211 ~~~~~~l~~~l~-~~gv~i~~~~~v~~i~~~~~~~~-v~~~~-----------~g~~~~~~~D~vv~a~G~~p  270 (455)
T 1ebd_A          211 KQMAAIIKKRLK-KKGVEVVTNALAKGAEEREDGVT-VTYEA-----------NGETKTIDADYVLVTVGRRP  270 (455)
T ss_dssp             HHHHHHHHHHHH-HTTCEEEESEEEEEEEEETTEEE-EEEEE-----------TTEEEEEEESEEEECSCEEE
T ss_pred             HHHHHHHHHHHH-HCCCEEEeCCEEEEEEEeCCeEE-EEEEe-----------CCceeEEEcCEEEECcCCCc
Confidence            233344455554 57999999999999987766543 32210           01246799999999999543

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=98.25  E-value=8.4e-07  Score=87.34  Aligned_cols=40  Identities=40%  Similarity=0.766  Sum_probs=37.5

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~  130 (356)
                      .+||+|||||++||++|+.|++. |++|+|+|+...+||..
T Consensus        11 ~~~v~IIGaG~aGl~aA~~L~~~-g~~v~v~E~~~~~GG~~   50 (489)
T 2jae_A           11 SHSVVVLGGGPAGLCSAFELQKA-GYKVTVLEARTRPGGRV   50 (489)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSSCTTC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHC-CCCEEEEeccCCCCCce
Confidence            58999999999999999999999 99999999999988864

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.22  E-value=1.1e-05  Score=78.72  Aligned_cols=97  Identities=12%  Similarity=0.082  Sum_probs=73.8

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.++|||+|..|+.+|..|++. |.+|+++++.+.+....                                     ...
T Consensus       148 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~l~~~-------------------------------------~d~  189 (452)
T 3oc4_A          148 QTVAVIGAGPIGMEAIDFLVKM-KKTVHVFESLENLLPKY-------------------------------------FDK  189 (452)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSSSSTTT-------------------------------------CCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCeEEEEEccCcccccc-------------------------------------CCH
Confidence            4799999999999999999999 99999999986432100                                     013


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      ++.+.+.+.+. +.|++++++++|+++..+++++ .+.+.               ..++.+|.||+|+|...
T Consensus       190 ~~~~~l~~~l~-~~GV~i~~~~~v~~i~~~~~~v-~v~~~---------------~g~i~aD~Vv~A~G~~p  244 (452)
T 3oc4_A          190 EMVAEVQKSLE-KQAVIFHFEETVLGIEETANGI-VLETS---------------EQEISCDSGIFALNLHP  244 (452)
T ss_dssp             HHHHHHHHHHH-TTTEEEEETCCEEEEEECSSCE-EEEES---------------SCEEEESEEEECSCCBC
T ss_pred             HHHHHHHHHHH-HcCCEEEeCCEEEEEEccCCeE-EEEEC---------------CCEEEeCEEEECcCCCC
Confidence            34445555554 7899999999999998777776 45543               13799999999999654

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.22  E-value=1.2e-05  Score=79.05  Aligned_cols=103  Identities=14%  Similarity=0.171  Sum_probs=72.5

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.|+|||+|..|+.+|..|++. |.+|+|+|+.+.+.. .+                                     ..
T Consensus       184 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~l~-~~-------------------------------------~~  224 (478)
T 1v59_A          184 KRLTIIGGGIIGLEMGSVYSRL-GSKVTVVEFQPQIGA-SM-------------------------------------DG  224 (478)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSSSS-SS-------------------------------------CH
T ss_pred             ceEEEECCCHHHHHHHHHHHHc-CCEEEEEEeCCcccc-cc-------------------------------------CH
Confidence            5799999999999999999999 999999999864321 00                                     12


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEe-CCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      ++...+.+.+. +.|++++++++|+++..+ ++....+...+      ..   +++..++.+|.||+|+|...
T Consensus       225 ~~~~~l~~~l~-~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~------~~---~g~~~~~~~D~vv~a~G~~p  287 (478)
T 1v59_A          225 EVAKATQKFLK-KQGLDFKLSTKVISAKRNDDKNVVEIVVED------TK---TNKQENLEAEVLLVAVGRRP  287 (478)
T ss_dssp             HHHHHHHHHHH-HTTCEEECSEEEEEEEEETTTTEEEEEEEE------TT---TTEEEEEEESEEEECSCEEE
T ss_pred             HHHHHHHHHHH-HCCCEEEeCCEEEEEEEecCCCeEEEEEEE------cC---CCCceEEECCEEEECCCCCc
Confidence            33444555554 579999999999999862 33333344321      00   11246799999999999543

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.21  E-value=1.2e-05  Score=74.43  Aligned_cols=98  Identities=10%  Similarity=0.143  Sum_probs=74.4

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~  169 (356)
                      ...|+|||+|..|+.+|..|++. |.+|+++++...+..                                         
T Consensus       173 ~~~v~vvG~G~~g~e~a~~l~~~-g~~v~~v~~~~~~~~-----------------------------------------  210 (338)
T 3itj_A          173 NKPLAVIGGGDSACEEAQFLTKY-GSKVFMLVRKDHLRA-----------------------------------------  210 (338)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTT-SSEEEEECSSSSCCS-----------------------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHhc-CCEEEEEEcCCccCC-----------------------------------------
Confidence            35799999999999999999999 999999998754210                                         


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~  241 (356)
                         ...+.+.+.+..|+++++++.++++..+++++.++.+.+      ..   .++..++.+|.||+|+|..
T Consensus       211 ---~~~~~~~l~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~------~~---~g~~~~i~~D~vi~a~G~~  270 (338)
T 3itj_A          211 ---STIMQKRAEKNEKIEILYNTVALEAKGDGKLLNALRIKN------TK---KNEETDLPVSGLFYAIGHT  270 (338)
T ss_dssp             ---CHHHHHHHHHCTTEEEECSEEEEEEEESSSSEEEEEEEE------TT---TTEEEEEECSEEEECSCEE
T ss_pred             ---CHHHHHHHHhcCCeEEeecceeEEEEcccCcEEEEEEEE------CC---CCceEEEEeCEEEEEeCCC
Confidence               112344454456999999999999998877777777642      01   1224679999999999944

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=98.21  E-value=8.3e-06  Score=80.52  Aligned_cols=96  Identities=19%  Similarity=0.295  Sum_probs=71.0

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.|+|||+|..|+.+|..|++. |.+|+|+|+.+.+-...                                     ...
T Consensus       195 ~~vvVIGgG~ig~E~A~~l~~~-g~~Vtlv~~~~~~l~~~-------------------------------------~~~  236 (490)
T 2bc0_A          195 KRVAVVGAGYIGVELAEAFQRK-GKEVVLIDVVDTCLAGY-------------------------------------YDR  236 (490)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSSTTTTT-------------------------------------SCH
T ss_pred             ceEEEECCCHHHHHHHHHHHHC-CCeEEEEEcccchhhhH-------------------------------------HHH
Confidence            5799999999999999999999 99999999986431100                                     012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~  241 (356)
                      ++.+.+.+.+. +.|++++++++++++.. ++++..+..+               ..++.+|.||+|+|..
T Consensus       237 ~~~~~l~~~l~-~~GV~i~~~~~v~~i~~-~~~v~~v~~~---------------g~~i~~D~Vi~a~G~~  290 (490)
T 2bc0_A          237 DLTDLMAKNME-EHGIQLAFGETVKEVAG-NGKVEKIITD---------------KNEYDVDMVILAVGFR  290 (490)
T ss_dssp             HHHHHHHHHHH-TTTCEEEETCCEEEEEC-SSSCCEEEES---------------SCEEECSEEEECCCEE
T ss_pred             HHHHHHHHHHH-hCCeEEEeCCEEEEEEc-CCcEEEEEEC---------------CcEEECCEEEECCCCC
Confidence            33444555554 67999999999999875 4544444432               3579999999999954

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.21  E-value=1.3e-05  Score=73.48  Aligned_cols=97  Identities=19%  Similarity=0.224  Sum_probs=72.4

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.|+|||+|..|+.+|..|++. +.+|+++++.+.+..                                       .  
T Consensus       145 ~~v~VvG~G~~g~e~A~~l~~~-g~~Vtlv~~~~~~~~---------------------------------------~--  182 (310)
T 1fl2_A          145 KRVAVIGGGNSGVEAAIDLAGI-VEHVTLLEFAPEMKA---------------------------------------D--  182 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT-BSEEEEECSSSSCCS---------------------------------------C--
T ss_pred             CEEEEECCCHHHHHHHHHHHHh-CCEEEEEEeCcccCc---------------------------------------c--
Confidence            4799999999999999999999 999999998764210                                       0  


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~  241 (356)
                         ..+.+.+.+..|++++++++++++..+++++.++.+.+.      .   +++..++.+|.||+|+|..
T Consensus       183 ---~~~~~~l~~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~------~---~g~~~~i~~D~vi~a~G~~  241 (310)
T 1fl2_A          183 ---QVLQDKLRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDR------V---SGDIHNIELAGIFVQIGLL  241 (310)
T ss_dssp             ---HHHHHHHHTCTTEEEESSEEEEEEEESSSSEEEEEEEET------T---TCCEEEEECSEEEECSCEE
T ss_pred             ---HHHHHHHhhCCCeEEecCCceEEEEcCCCcEEEEEEEEC------C---CCcEEEEEcCEEEEeeCCc
Confidence               123344443469999999999999877677777766420      1   1234679999999999843

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=98.20  E-value=1e-06  Score=84.78  Aligned_cols=41  Identities=32%  Similarity=0.502  Sum_probs=37.9

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW  131 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~  131 (356)
                      ++||+|||||++|+++|+.|++. |.+|+|+|+...+||.+.
T Consensus        29 ~~dv~IIGaG~aGl~aA~~l~~~-g~~v~v~E~~~~~GG~~~   69 (397)
T 3hdq_A           29 GFDYLIVGAGFAGSVLAERLASS-GQRVLIVDRRPHIGGNAY   69 (397)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSSGGGC
T ss_pred             CCCEEEECccHHHHHHHHHHHHC-CCceEEEeccCCCCCccc
Confidence            58999999999999999999999 999999999988887653

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.20  E-value=8.9e-06  Score=80.08  Aligned_cols=96  Identities=20%  Similarity=0.269  Sum_probs=72.2

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~  169 (356)
                      ..+|+|||+|..|+.+|..|++. |.+|+++|+.+.+...                                      ..
T Consensus       186 ~~~vvViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~l~~--------------------------------------~~  226 (480)
T 3cgb_A          186 VEDVTIIGGGAIGLEMAETFVEL-GKKVRMIERNDHIGTI--------------------------------------YD  226 (480)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHT-TCEEEEECCGGGTTSS--------------------------------------SC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhc-CCeEEEEEeCCchhhc--------------------------------------CC
Confidence            36899999999999999999999 9999999998643210                                      01


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~  241 (356)
                      ..+.+.+.+.+. +.|++++++++|+++..+ +++..+.+.               ..++.+|.||+|+|..
T Consensus       227 ~~~~~~l~~~l~-~~Gv~i~~~~~v~~i~~~-~~v~~v~~~---------------~~~i~~D~vi~a~G~~  281 (480)
T 3cgb_A          227 GDMAEYIYKEAD-KHHIEILTNENVKAFKGN-ERVEAVETD---------------KGTYKADLVLVSVGVK  281 (480)
T ss_dssp             HHHHHHHHHHHH-HTTCEEECSCCEEEEEES-SBEEEEEET---------------TEEEECSEEEECSCEE
T ss_pred             HHHHHHHHHHHH-HcCcEEEcCCEEEEEEcC-CcEEEEEEC---------------CCEEEcCEEEECcCCC
Confidence            233444555554 579999999999999764 555555542               2579999999999954

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.20  E-value=1.4e-05  Score=78.29  Aligned_cols=97  Identities=14%  Similarity=0.135  Sum_probs=71.3

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.|+|||+|..|+.+|..|++. |.+|+++|+.+.+...                                      ...
T Consensus       167 ~~vvVvGgG~~g~e~A~~l~~~-G~~Vtlv~~~~~~l~~--------------------------------------~~~  207 (463)
T 2r9z_A          167 KRVAIIGAGYIGIELAGLLRSF-GSEVTVVALEDRLLFQ--------------------------------------FDP  207 (463)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSSSTT--------------------------------------SCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhc-CCEEEEEEcCCccccc--------------------------------------cCH
Confidence            4799999999999999999999 9999999987542110                                      002


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCe-EEEcCEEEEcCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPN-VMEAKVVVSSCGHDG  242 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~-~i~Ak~VI~AtGg~~  242 (356)
                      .+...+.+.+. +.|++++++++|+++..+++. ..+.+.+              +. ++.+|.||+|+|...
T Consensus       208 ~~~~~l~~~l~-~~gv~i~~~~~v~~i~~~~~~-~~v~~~~--------------G~~~i~~D~vv~a~G~~p  264 (463)
T 2r9z_A          208 LLSATLAENMH-AQGIETHLEFAVAALERDAQG-TTLVAQD--------------GTRLEGFDSVIWAVGRAP  264 (463)
T ss_dssp             HHHHHHHHHHH-HTTCEEESSCCEEEEEEETTE-EEEEETT--------------CCEEEEESEEEECSCEEE
T ss_pred             HHHHHHHHHHH-HCCCEEEeCCEEEEEEEeCCe-EEEEEeC--------------CcEEEEcCEEEECCCCCc
Confidence            22334444454 579999999999999877655 3344432              24 799999999999544

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.19  E-value=2.5e-05  Score=71.69  Aligned_cols=98  Identities=12%  Similarity=0.147  Sum_probs=72.4

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~  169 (356)
                      .-.|+|||+|..|+.+|..|++. |.+|+++++.+.+..                                        .
T Consensus       143 ~~~v~VvG~G~~g~e~A~~l~~~-g~~Vtlv~~~~~~~~----------------------------------------~  181 (311)
T 2q0l_A          143 NKEVAVLGGGDTAVEEAIYLANI-CKKVYLIHRRDGFRC----------------------------------------A  181 (311)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHTT-SSEEEEECSSSSCCS----------------------------------------C
T ss_pred             CCEEEEECCCHHHHHHHHHHHhc-CCEEEEEeeCCccCC----------------------------------------C
Confidence            35799999999999999999999 999999998753210                                        0


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~  241 (356)
                          ..+.+.+.++.|+++++++.++++..+++++.++....      ..   +++..++.+|.||+|+|..
T Consensus       182 ----~~~~~~l~~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~------~~---~g~~~~i~~D~vi~a~G~~  240 (311)
T 2q0l_A          182 ----PITLEHAKNNDKIEFLTPYVVEEIKGDASGVSSLSIKN------TA---TNEKRELVVPGFFIFVGYD  240 (311)
T ss_dssp             ----HHHHHHHHTCTTEEEETTEEEEEEEEETTEEEEEEEEE------TT---TCCEEEEECSEEEECSCEE
T ss_pred             ----HHHHHHHhhCCCeEEEeCCEEEEEECCCCcEeEEEEEe------cC---CCceEEEecCEEEEEecCc
Confidence                11334444457999999999999987767766666531      00   1233579999999999944

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=98.19  E-value=1.3e-06  Score=83.53  Aligned_cols=42  Identities=29%  Similarity=0.457  Sum_probs=38.5

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEecc-CCCCCccc
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS-VSPGGGAW  131 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~-~~~Gg~~~  131 (356)
                      ..+||+|||||++||++|+.|++. |++|+|+|+. ..+||.++
T Consensus        43 ~~~~V~IIGAGiaGL~aA~~L~~~-G~~V~VlE~~~~~vGGr~~   85 (376)
T 2e1m_A           43 PPKRILIVGAGIAGLVAGDLLTRA-GHDVTILEANANRVGGRIK   85 (376)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHT-SCEEEEECSCSSCCBTTCC
T ss_pred             CCceEEEECCCHHHHHHHHHHHHC-CCcEEEEeccccccCCcee
Confidence            358999999999999999999999 9999999999 88888654

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.19  E-value=1.8e-05  Score=77.58  Aligned_cols=98  Identities=20%  Similarity=0.268  Sum_probs=71.8

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -+++|||+|..|+.+|..|++..|.+|+++++.+.+....                                     ...
T Consensus       160 ~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~~~-------------------------------------~~~  202 (472)
T 3iwa_A          160 SKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPGF-------------------------------------TSK  202 (472)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSSTTT-------------------------------------SCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcccccc-------------------------------------cCH
Confidence            5899999999999999999874378999999875421100                                     013


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~  241 (356)
                      .+.+.+.+.+. +.|++++++++|+++..+++++. +...+              +.++.+|.||+|+|..
T Consensus       203 ~~~~~l~~~l~-~~GV~i~~~~~v~~i~~~~~~v~-v~~~~--------------g~~i~aD~Vv~a~G~~  257 (472)
T 3iwa_A          203 SLSQMLRHDLE-KNDVVVHTGEKVVRLEGENGKVA-RVITD--------------KRTLDADLVILAAGVS  257 (472)
T ss_dssp             HHHHHHHHHHH-HTTCEEECSCCEEEEEESSSBEE-EEEES--------------SCEEECSEEEECSCEE
T ss_pred             HHHHHHHHHHH-hcCCEEEeCCEEEEEEccCCeEE-EEEeC--------------CCEEEcCEEEECCCCC
Confidence            34445555554 67999999999999988677665 43331              3579999999999944

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.18  E-value=1.8e-05  Score=79.38  Aligned_cols=96  Identities=16%  Similarity=0.207  Sum_probs=70.1

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.|+|||+|..|+.+|..|++. |.+|+++++.+.+...                                      ...
T Consensus       152 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~l~~--------------------------------------~~~  192 (565)
T 3ntd_A          152 EHATVVGGGFIGLEMMESLHHL-GIKTTLLELADQVMTP--------------------------------------VDR  192 (565)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSSSCTT--------------------------------------SCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhc-CCcEEEEEcCCccchh--------------------------------------cCH
Confidence            4799999999999999999999 9999999997642110                                      012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEe-------------------CCeEEEEEEcceeeecccCCCCCCCCeEEEc
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVK-------------------GGRVGGVVTNWALVSMNHDTQSCMDPNVMEA  231 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~-------------------~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A  231 (356)
                      .+...+.+.+. +.|+++++++.++++..+                   ++++. +...              ++.++.+
T Consensus       193 ~~~~~l~~~l~-~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~--------------~g~~i~~  256 (565)
T 3ntd_A          193 EMAGFAHQAIR-DQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLS-LTLS--------------NGELLET  256 (565)
T ss_dssp             HHHHHHHHHHH-HTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEE-EEET--------------TSCEEEE
T ss_pred             HHHHHHHHHHH-HCCCEEEeCCeEEEEeccccccccccccccccccccCCCcEE-EEEc--------------CCCEEEc
Confidence            33344444444 679999999999999873                   44443 2222              1357999


Q ss_pred             CEEEEcCCCC
Q 018414          232 KVVVSSCGHD  241 (356)
Q Consensus       232 k~VI~AtGg~  241 (356)
                      |.||+|+|..
T Consensus       257 D~vi~a~G~~  266 (565)
T 3ntd_A          257 DLLIMAIGVR  266 (565)
T ss_dssp             SEEEECSCEE
T ss_pred             CEEEECcCCc
Confidence            9999999944

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=98.18  E-value=1.4e-05  Score=76.94  Aligned_cols=93  Identities=18%  Similarity=0.208  Sum_probs=69.0

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.|+|||+|..|+.+|..|++. |.+|+++|+.+.+....                                     ...
T Consensus       146 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~l~~~-------------------------------------~~~  187 (408)
T 2gqw_A          146 SRLLIVGGGVIGLELAATARTA-GVHVSLVETQPRLMSRA-------------------------------------APA  187 (408)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSSSSTTT-------------------------------------SCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-CCEEEEEEeCCcccccc-------------------------------------cCH
Confidence            5799999999999999999999 99999999986432100                                     012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~  241 (356)
                      .+...+.+.+. +.|++++++++++++.  ++   .+.+.+              +.++.+|.||+|+|..
T Consensus       188 ~~~~~l~~~l~-~~GV~i~~~~~v~~i~--~~---~v~~~~--------------g~~i~~D~vi~a~G~~  238 (408)
T 2gqw_A          188 TLADFVARYHA-AQGVDLRFERSVTGSV--DG---VVLLDD--------------GTRIAADMVVVGIGVL  238 (408)
T ss_dssp             HHHHHHHHHHH-HTTCEEEESCCEEEEE--TT---EEEETT--------------SCEEECSEEEECSCEE
T ss_pred             HHHHHHHHHHH-HcCcEEEeCCEEEEEE--CC---EEEECC--------------CCEEEcCEEEECcCCC
Confidence            33344445554 5799999999999997  44   344432              3679999999999944

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=98.17  E-value=1.1e-06  Score=83.58  Aligned_cols=40  Identities=40%  Similarity=0.652  Sum_probs=37.3

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccc
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW  131 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~  131 (356)
                      +||+|||||++|+++|+.|+++ |.+|+|+|++..+||.+.
T Consensus         2 ~~v~iiG~G~~Gl~~A~~l~~~-g~~v~v~E~~~~~GG~~~   41 (367)
T 1i8t_A            2 YDYIIVGSGLFGAVCANELKKL-NKKVLVIEKRNHIGGNAY   41 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGG-TCCEEEECSSSSSSGGGC
T ss_pred             CCEEEECcCHHHHHHHHHHHhC-CCcEEEEecCCCCCcceE
Confidence            7999999999999999999999 999999999988887753

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.16  E-value=4.9e-06  Score=80.22  Aligned_cols=97  Identities=15%  Similarity=0.147  Sum_probs=71.7

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.|+|||+|..|+.+|..|++. |.+|+++|+.+.+-.          ..                           ...
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtvv~~~~~~l~----------~~---------------------------~~~  185 (410)
T 3ef6_A          144 TRLLIVGGGLIGCEVATTARKL-GLSVTILEAGDELLV----------RV---------------------------LGR  185 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSSSH----------HH---------------------------HCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-CCeEEEEecCCccch----------hh---------------------------cCH
Confidence            5799999999999999999999 999999998864210          00                           012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~  241 (356)
                      .+.+.+.+.+. +.|+++++++.++++..++ ++.++.+.+              +.++.+|.||+|+|..
T Consensus       186 ~~~~~l~~~l~-~~GV~i~~~~~v~~i~~~~-~~~~v~~~d--------------g~~i~aD~Vv~a~G~~  240 (410)
T 3ef6_A          186 RIGAWLRGLLT-ELGVQVELGTGVVGFSGEG-QLEQVMASD--------------GRSFVADSALICVGAE  240 (410)
T ss_dssp             HHHHHHHHHHH-HHTCEEECSCCEEEEECSS-SCCEEEETT--------------SCEEECSEEEECSCEE
T ss_pred             HHHHHHHHHHH-HCCCEEEeCCEEEEEeccC-cEEEEEECC--------------CCEEEcCEEEEeeCCe
Confidence            33344444444 5699999999999987543 555666642              3679999999999954

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=98.15  E-value=1.5e-06  Score=85.90  Aligned_cols=42  Identities=29%  Similarity=0.495  Sum_probs=37.9

Q ss_pred             CCcccEEEECCCHHHHHHHHHhhcCCC-CeEEEEeccCCCCCcc
Q 018414           88 YADTDVVVVGAGSAGLSCAYELSKNPN-IQIAIIEQSVSPGGGA  130 (356)
Q Consensus        88 ~~~~DVvIIGgG~aGl~aA~~La~~~G-~~V~llEk~~~~Gg~~  130 (356)
                      +..+||+|||||++||++|+.|++. | .+|+|+|+...+||.+
T Consensus         7 ~~~~~v~iiG~G~~Gl~~A~~l~~~-g~~~v~v~E~~~~~GG~~   49 (484)
T 4dsg_A            7 LLTPKIVIIGAGPTGLGAAVRLTEL-GYKNWHLYECNDTPGGLS   49 (484)
T ss_dssp             CCSCCEEEECCSHHHHHHHHHHHHT-TCCSEEEEESSSSSSGGG
T ss_pred             ccCCCEEEECcCHHHHHHHHHHHHc-CCCCEEEEeCCCCCCCee
Confidence            3468999999999999999999999 7 7999999998888765

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=98.13  E-value=6.7e-07  Score=87.71  Aligned_cols=39  Identities=23%  Similarity=0.416  Sum_probs=34.0

Q ss_pred             cccEEEECCCHHHHHHHHHhhc-C-C----CCeEEEEeccCCCCC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSK-N-P----NIQIAIIEQSVSPGG  128 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~-~-~----G~~V~llEk~~~~Gg  128 (356)
                      .+||+|||||++|+.+|..|++ . +    +.+|+|+|+.+.++|
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg   47 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWG   47 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCST
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCC
Confidence            4799999999999999999988 4 2    689999999977664

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=98.13  E-value=4.6e-06  Score=79.87  Aligned_cols=102  Identities=20%  Similarity=0.171  Sum_probs=62.4

Q ss_pred             cEEEECCCHHHHHHHHHhhcC-CCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCC-CccccCCeEEEech
Q 018414           92 DVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI-DYDEQDNYVVIKHA  169 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~-~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~-~~~~~~~~~~~~~~  169 (356)
                      .|||||||++|+++|.+|++. ++.+|+|||+++....    + ..+.          ++- .|. +.+.   ..  .. 
T Consensus         4 kVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~----~-p~~~----------~v~-~g~~~~~~---~~--~~-   61 (401)
T 3vrd_B            4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYT----C-YMSN----------EVI-GGDRELAS---LR--VG-   61 (401)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEEC----S-TTHH----------HHH-HTSSCGGG---GE--EC-
T ss_pred             EEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCC----c-cCHH----------HHh-cCCCCHHH---Hh--hC-
Confidence            599999999999999999874 2579999999863211    0 0000          000 011 1110   00  01 


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~  241 (356)
                             ++.+. +.|++++.+ +|+.|..++..+   .+.              +..++.+|++|+|+|..
T Consensus        62 -------~~~~~-~~gv~~i~~-~v~~id~~~~~v---~~~--------------~g~~i~yd~LviAtG~~  107 (401)
T 3vrd_B           62 -------YDGLR-AHGIQVVHD-SALGIDPDKKLV---KTA--------------GGAEFAYDRCVVAPGID  107 (401)
T ss_dssp             -------SHHHH-HTTCEEECS-CEEEEETTTTEE---EET--------------TSCEEECSEEEECCCEE
T ss_pred             -------HHHHH-HCCCEEEEe-EEEEEEccCcEE---Eec--------------ccceeecceeeeccCCc
Confidence                   11222 358999887 688887665543   232              24679999999999964

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.13  E-value=1.5e-05  Score=78.44  Aligned_cols=99  Identities=13%  Similarity=0.120  Sum_probs=71.2

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.++|||+|..|+.+|..|++. |.+|+++|+.+.+...                                      ...
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~-g~~Vtlv~~~~~~l~~--------------------------------------~d~  226 (479)
T 2hqm_A          186 KKVVVVGAGYIGIELAGVFHGL-GSETHLVIRGETVLRK--------------------------------------FDE  226 (479)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHT-TCEEEEECSSSSSCTT--------------------------------------SCH
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCceEEEEeCCccccc--------------------------------------cCH
Confidence            5799999999999999999999 9999999998643210                                      012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCe-EEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGR-VGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~-v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      .+.+.+.+.+. +.|++++++++|+++..+++. +..+.+.+            |+ .++.+|.||+|+|...
T Consensus       227 ~~~~~l~~~l~-~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~------------G~-~~i~~D~vv~a~G~~p  285 (479)
T 2hqm_A          227 CIQNTITDHYV-KEGINVHKLSKIVKVEKNVETDKLKIHMND------------SK-SIDDVDELIWTIGRKS  285 (479)
T ss_dssp             HHHHHHHHHHH-HHTCEEECSCCEEEEEECC-CCCEEEEETT------------SC-EEEEESEEEECSCEEE
T ss_pred             HHHHHHHHHHH-hCCeEEEeCCEEEEEEEcCCCcEEEEEECC------------Cc-EEEEcCEEEECCCCCC
Confidence            33334444444 569999999999999875432 34454431            11 5799999999999543

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.12  E-value=2.4e-05  Score=76.78  Aligned_cols=104  Identities=15%  Similarity=0.140  Sum_probs=72.6

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.|+|||+|..|+.+|..|++. |.+|+++|+.+.+....                                     ...
T Consensus       179 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~l~~~-------------------------------------~~~  220 (474)
T 1zmd_A          179 EKMVVIGAGVIGVELGSVWQRL-GADVTAVEFLGHVGGVG-------------------------------------IDM  220 (474)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSSSCSS-------------------------------------CCH
T ss_pred             ceEEEECCCHHHHHHHHHHHHc-CCEEEEEeccCccCCcc-------------------------------------cCH
Confidence            4799999999999999999999 99999999986432100                                     012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      ++...+.+.+. +.|++++++++|+++..+++....+....      ..   .++..++.+|.||+|+|...
T Consensus       221 ~~~~~l~~~l~-~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~------~~---~~~~~~i~~D~vv~a~G~~p  282 (474)
T 1zmd_A          221 EISKNFQRILQ-KQGFKFKLNTKVTGATKKSDGKIDVSIEA------AS---GGKAEVITCDVLLVCIGRRP  282 (474)
T ss_dssp             HHHHHHHHHHH-HTTCEEECSEEEEEEEECTTSCEEEEEEE------TT---SCCCEEEEESEEEECSCEEE
T ss_pred             HHHHHHHHHHH-HCCCEEEeCceEEEEEEcCCceEEEEEEe------cC---CCCceEEEcCEEEECcCCCc
Confidence            33344455554 57999999999999987665412233210      00   11346799999999999543

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.12  E-value=2.7e-05  Score=72.13  Aligned_cols=98  Identities=16%  Similarity=0.249  Sum_probs=72.2

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.|+|||+|..|+.+|..|++. |.+|+++++.+.+..                                        . 
T Consensus       160 ~~v~VvG~G~~g~e~A~~l~~~-g~~V~lv~~~~~~~~----------------------------------------~-  197 (333)
T 1vdc_A          160 KPLAVIGGGDSAMEEANFLTKY-GSKVYIIHRRDAFRA----------------------------------------S-  197 (333)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTT-SSEEEEECSSSSCCS----------------------------------------C-
T ss_pred             CeEEEECCChHHHHHHHHHHhc-CCeEEEEecCCcCCc----------------------------------------c-
Confidence            5799999999999999999999 999999998754210                                        0 


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCC--eEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~--~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                         ..+.+++.++.|++++++++++++..+++  ++.++.+.+      .   .+++..++.+|.||+|+|...
T Consensus       198 ---~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~v~~~~------~---~~g~~~~i~~D~vi~a~G~~p  259 (333)
T 1vdc_A          198 ---KIMQQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKN------V---VTGDVSDLKVSGLFFAIGHEP  259 (333)
T ss_dssp             ---HHHHHHHHTCTTEEEECSEEEEEEEESSSSSSEEEEEEEE------T---TTCCEEEEECSEEEECSCEEE
T ss_pred             ---HHHHHHHHhCCCeeEecCCceEEEeCCCCccceeeEEEEe------c---CCCceEEEecCEEEEEeCCcc
Confidence               11233344578999999999999987654  666666532      0   012346799999999999543

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.10  E-value=2.1e-05  Score=77.83  Aligned_cols=99  Identities=8%  Similarity=0.080  Sum_probs=71.5

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.|+|||+|..|+.+|..|++. |.+|+++|+.+.+...                                      ...
T Consensus       177 ~~vvViGgG~ig~E~A~~l~~~-g~~Vtlv~~~~~~l~~--------------------------------------~d~  217 (500)
T 1onf_A          177 KKIGIVGSGYIAVELINVIKRL-GIDSYIFARGNRILRK--------------------------------------FDE  217 (500)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTT-TCEEEEECSSSSSCTT--------------------------------------SCH
T ss_pred             CeEEEECChHHHHHHHHHHHHc-CCeEEEEecCCccCcc--------------------------------------cch
Confidence            4799999999999999999999 9999999997643210                                      012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeE-EEcCEEEEcCCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNV-MEAKVVVSSCGHDGP  243 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~-i~Ak~VI~AtGg~~~  243 (356)
                      ++...+.+.+. +.|++++++++++++..+++....+...+              +.+ +.+|.||+|+|....
T Consensus       218 ~~~~~l~~~l~-~~gv~i~~~~~v~~i~~~~~~~~~v~~~~--------------g~~~~~~D~vi~a~G~~p~  276 (500)
T 1onf_A          218 SVINVLENDMK-KNNINIVTFADVVEIKKVSDKNLSIHLSD--------------GRIYEHFDHVIYCVGRSPD  276 (500)
T ss_dssp             HHHHHHHHHHH-HTTCEEECSCCEEEEEESSTTCEEEEETT--------------SCEEEEESEEEECCCBCCT
T ss_pred             hhHHHHHHHHH-hCCCEEEECCEEEEEEEcCCceEEEEECC--------------CcEEEECCEEEECCCCCcC
Confidence            33344455554 67999999999999987543323344431              234 899999999996543

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.10  E-value=2.6e-05  Score=71.40  Aligned_cols=96  Identities=17%  Similarity=0.199  Sum_probs=73.1

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.|+|||+|..|+.+|..|++. +.+|+++++...+..                                        ..
T Consensus       148 ~~v~viG~g~~~~e~a~~l~~~-g~~v~~~~~~~~~~~----------------------------------------~~  186 (315)
T 3r9u_A          148 KEVAVLGGGDTALEEALYLANI-CSKIYLIHRRDEFRA----------------------------------------AP  186 (315)
T ss_dssp             SEEEEECCBHHHHHHHHHHHTT-SSEEEEECSSSSCBS----------------------------------------CH
T ss_pred             CEEEEECCCHHHHHHHHHHHhh-CCEEEEEEeCCCCCC----------------------------------------CH
Confidence            5799999999999999999999 999999998753210                                        01


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~  241 (356)
                      .    +++++.++.|+++++++.+.++..+++++.++.+..          .+|+..++.+|.||+|+|..
T Consensus       187 ~----~~~~~~~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~----------~~g~~~~~~~D~vv~a~G~~  243 (315)
T 3r9u_A          187 S----TVEKVKKNEKIELITSASVDEVYGDKMGVAGVKVKL----------KDGSIRDLNVPGIFTFVGLN  243 (315)
T ss_dssp             H----HHHHHHHCTTEEEECSCEEEEEEEETTEEEEEEEEC----------TTSCEEEECCSCEEECSCEE
T ss_pred             H----HHHHHHhcCCeEEEeCcEEEEEEcCCCcEEEEEEEc----------CCCCeEEeecCeEEEEEcCC
Confidence            1    223333478999999999999998887887776641          01234589999999999954

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.10  E-value=4.2e-05  Score=70.95  Aligned_cols=166  Identities=16%  Similarity=0.156  Sum_probs=100.0

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.|+|||+|..|+.+|..|++. |.+|+++++.+.+..                                        ..
T Consensus       153 ~~v~viG~G~~g~e~a~~l~~~-g~~V~~v~~~~~~~~----------------------------------------~~  191 (335)
T 2zbw_A          153 KRVLIVGGGDSAVDWALNLLDT-ARRITLIHRRPQFRA----------------------------------------HE  191 (335)
T ss_dssp             CEEEEECSSHHHHHHHHHTTTT-SSEEEEECSSSSCCS----------------------------------------CH
T ss_pred             CEEEEECCCHHHHHHHHHHHhh-CCEEEEEEcCCccCc----------------------------------------cH
Confidence            4799999999999999999999 999999998753210                                        01


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCCCCccch
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK  250 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~~~~~~~  250 (356)
                      ...+.+.+.+. +.|+++++++.++++.. ++++.++.+..      ..   +++..++.+|.||+|+|....     ..
T Consensus       192 ~~~~~l~~~l~-~~gv~v~~~~~v~~i~~-~~~~~~v~~~~------~~---~g~~~~i~~D~vi~a~G~~p~-----~~  255 (335)
T 2zbw_A          192 ASVKELMKAHE-EGRLEVLTPYELRRVEG-DERVRWAVVFH------NQ---TQEELALEVDAVLILAGYITK-----LG  255 (335)
T ss_dssp             HHHHHHHHHHH-TTSSEEETTEEEEEEEE-SSSEEEEEEEE------TT---TCCEEEEECSEEEECCCEEEE-----CG
T ss_pred             HHHHHHHhccc-cCCeEEecCCcceeEcc-CCCeeEEEEEE------CC---CCceEEEecCEEEEeecCCCC-----ch
Confidence            12233444444 67999999999999987 45555565531      00   123367999999999994432     22


Q ss_pred             hhhccCcccccccccccccccccceeeeccccccCceeEeceEEEEecCCcccCCcc-ceeeeehHHHHHHHHHHhCCC
Q 018414          251 RLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTF-GAMMISGQKAAHLALKSLGQP  328 (356)
Q Consensus       251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~~~~~~~~~~g~~~~~~~~-g~~l~sG~~~~~l~l~~~~~~  328 (356)
                      .+...++... .  ..+.++  +..     +.-.+++|..|...... +    .+.. ...+..|..+++.+++.+...
T Consensus       256 ~l~~~~~~~~-~--g~i~vd--~~~-----~t~~~~vya~GD~~~~~-~----~~~~~~~A~~~g~~aa~~i~~~l~~~  319 (335)
T 2zbw_A          256 PLANWGLALE-K--NKIKVD--TTM-----ATSIPGVYACGDIVTYP-G----KLPLIVLGFGEAAIAANHAAAYANPA  319 (335)
T ss_dssp             GGGGSCCCEE-T--TEEECC--TTC-----BCSSTTEEECSTTEECT-T----CCCCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             Hhhhcceecc-C--CeeeeC--CCC-----CCCCCCEEEeccccccC-c----chhhhhhhHHHHHHHHHHHHHHhhhh
Confidence            2333332100 1  111111  111     11137888887644321 1    1111 112257888899999888644

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.10  E-value=3.7e-05  Score=75.83  Aligned_cols=102  Identities=16%  Similarity=0.227  Sum_probs=73.7

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.|+|||+|..|+.+|..|++. |.+|+++|+.+.+...                                      ...
T Consensus       199 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~l~~--------------------------------------~d~  239 (491)
T 3urh_A          199 ASMIVVGGGVIGLELGSVWARL-GAKVTVVEFLDTILGG--------------------------------------MDG  239 (491)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHH-TCEEEEECSSSSSSSS--------------------------------------SCH
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCEEEEEecccccccc--------------------------------------CCH
Confidence            4799999999999999999999 9999999988643210                                      013


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      ++.+.+.+.+. +.|++++.+++++++..+++.+. +...+      .+   .++..++.+|.||+|+|...
T Consensus       240 ~~~~~l~~~l~-~~gV~v~~~~~v~~i~~~~~~~~-v~~~~------~~---~g~~~~i~~D~Vi~a~G~~p  300 (491)
T 3urh_A          240 EVAKQLQRMLT-KQGIDFKLGAKVTGAVKSGDGAK-VTFEP------VK---GGEATTLDAEVVLIATGRKP  300 (491)
T ss_dssp             HHHHHHHHHHH-HTTCEEECSEEEEEEEEETTEEE-EEEEE------TT---SCCCEEEEESEEEECCCCEE
T ss_pred             HHHHHHHHHHH-hCCCEEEECCeEEEEEEeCCEEE-EEEEe------cC---CCceEEEEcCEEEEeeCCcc
Confidence            33444455554 67999999999999988777554 33321      00   12346899999999999543

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=98.09  E-value=2.5e-06  Score=84.20  Aligned_cols=40  Identities=33%  Similarity=0.628  Sum_probs=37.2

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~  130 (356)
                      .+||+|||||++||++|+.|+++ |++|+|+|+...+||.+
T Consensus        13 ~~~v~iiG~G~~Gl~aA~~l~~~-g~~v~v~E~~~~~GG~~   52 (504)
T 1sez_A           13 AKRVAVIGAGVSGLAAAYKLKIH-GLNVTVFEAEGKAGGKL   52 (504)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTT-SCEEEEECSSSSSCSSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHC-CCcEEEEEeCCCCCCce
Confidence            48999999999999999999999 99999999999988754

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.09  E-value=2.8e-05  Score=76.02  Aligned_cols=100  Identities=19%  Similarity=0.286  Sum_probs=71.2

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.|+|||+|..|+.+|..|++. |.+|+|+|+.+.+...                                      ...
T Consensus       172 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~l~~--------------------------------------~~~  212 (464)
T 2a8x_A          172 KSIIIAGAGAIGMEFGYVLKNY-GVDVTIVEFLPRALPN--------------------------------------EDA  212 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSSSTT--------------------------------------SCH
T ss_pred             CeEEEECCcHHHHHHHHHHHHc-CCeEEEEEcCCccccc--------------------------------------cCH
Confidence            5799999999999999999999 9999999998643210                                      012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      ++...+.+.+. +.|++++++++++++..+++.+. +....           +++..++.+|.||+|+|...
T Consensus       213 ~~~~~l~~~l~-~~gv~i~~~~~v~~i~~~~~~~~-v~~~~-----------~g~~~~~~~D~vv~a~G~~p  271 (464)
T 2a8x_A          213 DVSKEIEKQFK-KLGVTILTATKVESIADGGSQVT-VTVTK-----------DGVAQELKAEKVLQAIGFAP  271 (464)
T ss_dssp             HHHHHHHHHHH-HHTCEEECSCEEEEEEECSSCEE-EEEES-----------SSCEEEEEESEEEECSCEEE
T ss_pred             HHHHHHHHHHH-HcCCEEEeCcEEEEEEEcCCeEE-EEEEc-----------CCceEEEEcCEEEECCCCCc
Confidence            23334444444 56999999999999987655432 33210           11236799999999999543

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.08  E-value=2e-05  Score=74.15  Aligned_cols=167  Identities=15%  Similarity=0.140  Sum_probs=101.6

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.|+|||+|..|+.+|..|++. +.+|+++++...+...                                        .
T Consensus       164 ~~vvVvG~G~~g~e~A~~l~~~-g~~V~lv~~~~~~~~~----------------------------------------~  202 (360)
T 3ab1_A          164 KRVVIVGGGDSALDWTVGLIKN-AASVTLVHRGHEFQGH----------------------------------------G  202 (360)
T ss_dssp             CEEEEECSSHHHHHHHHHTTTT-SSEEEEECSSSSCSSC----------------------------------------S
T ss_pred             CcEEEECCCHHHHHHHHHHHhc-CCEEEEEEcCCCCCCC----------------------------------------H
Confidence            4799999999999999999999 9999999987542110                                        0


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCCCCccch
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK  250 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~~~~~~~  250 (356)
                      .+.+.+.+... +.|++++++++++++..+++++.++.+..          .+++..++.+|.||+|+|....     ..
T Consensus       203 ~~~~~l~~~~~-~~gv~i~~~~~v~~i~~~~~~v~~v~~~~----------~~g~~~~i~~D~vi~a~G~~p~-----~~  266 (360)
T 3ab1_A          203 KTAHEVERARA-NGTIDVYLETEVASIEESNGVLTRVHLRS----------SDGSKWTVEADRLLILIGFKSN-----LG  266 (360)
T ss_dssp             HHHHSSHHHHH-HTSEEEESSEEEEEEEEETTEEEEEEEEE----------TTCCEEEEECSEEEECCCBCCS-----CG
T ss_pred             HHHHHHHHHhh-cCceEEEcCcCHHHhccCCCceEEEEEEe----------cCCCeEEEeCCEEEECCCCCCC-----HH
Confidence            11122333333 56999999999999998888877776531          0122367999999999994432     12


Q ss_pred             hhhccCcccccccccccccccccceeeeccccccCceeEeceEEEEecCCcccCCccceeeeehHHHHHHHHHHhCCC
Q 018414          251 RLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQP  328 (356)
Q Consensus       251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~~~~~~~~~~g~~~~~~~~g~~l~sG~~~~~l~l~~~~~~  328 (356)
                      .+...++... .  ..+.++  +..     +.-.|++|..|.....- +..   ......+..|..+++.+++.+...
T Consensus       267 ~l~~~~~~~~-~--g~i~vd--~~~-----~t~~~~vya~GD~~~~~-~~~---~~~~~A~~~g~~aa~~i~~~l~~~  330 (360)
T 3ab1_A          267 PLARWDLELY-E--NALVVD--SHM-----KTSVDGLYAAGDIAYYP-GKL---KIIQTGLSEATMAVRHSLSYIKPG  330 (360)
T ss_dssp             GGGGSSCCEE-T--TEEECC--TTS-----BCSSTTEEECSTTEECT-TCC---CSHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHhhccccc-c--Ceeeec--CCC-----cCCCCCEEEecCccCCC-Ccc---ceeehhHHHHHHHHHHHHhhcCCc
Confidence            2333222100 0  111111  111     11237888887644321 111   111112256888899999888654

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=98.08  E-value=2.8e-06  Score=81.36  Aligned_cols=40  Identities=30%  Similarity=0.523  Sum_probs=37.0

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~  130 (356)
                      ++||+|||||++|+++|+.|++. |.+|+|+|+...+||.+
T Consensus         3 ~~~v~iiG~G~~Gl~~A~~l~~~-g~~v~v~E~~~~~GG~~   42 (384)
T 2bi7_A            3 SKKILIVGAGFSGAVIGRQLAEK-GHQVHIIDQRDHIGGNS   42 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTT-TCEEEEEESSSSSSGGG
T ss_pred             cCCEEEECcCHHHHHHHHHHHHC-CCcEEEEEecCCcCCcc
Confidence            47999999999999999999999 99999999998888765

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.07  E-value=3.8e-05  Score=71.07  Aligned_cols=96  Identities=21%  Similarity=0.250  Sum_probs=70.5

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.|+|||+|..|+.+|..|++. |.+|+++++.+.+..                                        . 
T Consensus       153 ~~v~VvG~G~~g~e~A~~l~~~-g~~Vtlv~~~~~~~~----------------------------------------~-  190 (325)
T 2q7v_A          153 KKVVVIGGGDAAVEEGMFLTKF-ADEVTVIHRRDTLRA----------------------------------------N-  190 (325)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTT-CSEEEEECSSSSCCS----------------------------------------C-
T ss_pred             CEEEEECCCHHHHHHHHHHHhc-CCEEEEEeCCCcCCc----------------------------------------c-
Confidence            5799999999999999999999 999999998753210                                        0 


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~  241 (356)
                         ..+.+++.++.|++++++++++++..+ +++.++.+.+      ..   +|+..++.+|.||+|+|..
T Consensus       191 ---~~~~~~l~~~~gv~i~~~~~v~~i~~~-~~v~~v~~~~------~~---~g~~~~i~~D~vi~a~G~~  248 (325)
T 2q7v_A          191 ---KVAQARAFANPKMKFIWDTAVEEIQGA-DSVSGVKLRN------LK---TGEVSELATDGVFIFIGHV  248 (325)
T ss_dssp             ---HHHHHHHHTCTTEEEECSEEEEEEEES-SSEEEEEEEE------TT---TCCEEEEECSEEEECSCEE
T ss_pred             ---hHHHHHHHhcCCceEecCCceEEEccC-CcEEEEEEEE------CC---CCcEEEEEcCEEEEccCCC
Confidence               122344444579999999999999864 5566666531      00   1233579999999999844

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.06  E-value=2.3e-05  Score=77.10  Aligned_cols=100  Identities=12%  Similarity=0.070  Sum_probs=71.1

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.++|||||..|+.+|..|++. |.+|+|+|+.+.+...                                      ...
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~-G~~Vtlv~~~~~~l~~--------------------------------------~~~  226 (482)
T 1ojt_A          186 GKLLIIGGGIIGLEMGTVYSTL-GSRLDVVEMMDGLMQG--------------------------------------ADR  226 (482)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHH-TCEEEEECSSSSSSTT--------------------------------------SCH
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCeEEEEEECCccccc--------------------------------------cCH
Confidence            5799999999999999999999 9999999998643210                                      012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~  241 (356)
                      ++.+.+.+.+. +.|++++++++++++..+++.+ .+...+      ..    ++..++.+|.||+|+|..
T Consensus       227 ~~~~~l~~~l~-~~gV~i~~~~~v~~i~~~~~~~-~v~~~~------~~----~~g~~~~~D~vv~a~G~~  285 (482)
T 1ojt_A          227 DLVKVWQKQNE-YRFDNIMVNTKTVAVEPKEDGV-YVTFEG------AN----APKEPQRYDAVLVAAGRA  285 (482)
T ss_dssp             HHHHHHHHHHG-GGEEEEECSCEEEEEEEETTEE-EEEEES------SS----CCSSCEEESCEEECCCEE
T ss_pred             HHHHHHHHHHH-hcCCEEEECCEEEEEEEcCCeE-EEEEec------cC----CCceEEEcCEEEECcCCC
Confidence            33344455554 6799999999999998776543 333321      00    012468899999999954

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.05  E-value=2.5e-05  Score=72.10  Aligned_cols=96  Identities=19%  Similarity=0.240  Sum_probs=70.6

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.|+|||+|..|+..|..|++. +.+|+++++.+.+..                                        ..
T Consensus       156 ~~v~viG~G~~g~e~a~~l~~~-g~~V~~i~~~~~~~~----------------------------------------~~  194 (319)
T 3cty_A          156 KRVVTIGGGNSGAIAAISMSEY-VKNVTIIEYMPKYMC----------------------------------------EN  194 (319)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTT-BSEEEEECSSSSCCS----------------------------------------CH
T ss_pred             CeEEEECCCHHHHHHHHHHHhh-CCcEEEEEcCCccCC----------------------------------------CH
Confidence            5799999999999999999999 999999998753210                                        01


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~  241 (356)
                          .+.+.+. +.|++++++++++++..+++++.++.+.+      ..   +++..++.+|.||+|+|..
T Consensus       195 ----~l~~~l~-~~gv~i~~~~~v~~i~~~~~~v~~v~~~~------~~---~g~~~~i~~D~vi~a~G~~  251 (319)
T 3cty_A          195 ----AYVQEIK-KRNIPYIMNAQVTEIVGDGKKVTGVKYKD------RT---TGEEKLIETDGVFIYVGLI  251 (319)
T ss_dssp             ----HHHHHHH-HTTCCEECSEEEEEEEESSSSEEEEEEEE------TT---TCCEEEECCSEEEECCCEE
T ss_pred             ----HHHHHHh-cCCcEEEcCCeEEEEecCCceEEEEEEEE------cC---CCceEEEecCEEEEeeCCc
Confidence                1233333 46999999999999987766676666531      00   1233579999999999844

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.04  E-value=3.9e-05  Score=77.40  Aligned_cols=94  Identities=15%  Similarity=0.222  Sum_probs=69.7

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.|+|||+|..|+.+|..|++. |.+|+++++.+.+...                                      ...
T Consensus       188 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~l~~--------------------------------------~~~  228 (588)
T 3ics_A          188 RHATVIGGGFIGVEMVENLRER-GIEVTLVEMANQVMPP--------------------------------------IDY  228 (588)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSSCTT--------------------------------------SCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-CCeEEEEecCCccccc--------------------------------------CCH
Confidence            5799999999999999999999 9999999987642210                                      012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~  241 (356)
                      .+...+.+.+. +.|++++++++|+++..+++.   +...+              +.++.+|.||+|+|..
T Consensus       229 ~~~~~l~~~l~-~~GV~i~~~~~v~~i~~~~~~---v~~~~--------------g~~i~~D~Vi~a~G~~  281 (588)
T 3ics_A          229 EMAAYVHEHMK-NHDVELVFEDGVDALEENGAV---VRLKS--------------GSVIQTDMLILAIGVQ  281 (588)
T ss_dssp             HHHHHHHHHHH-HTTCEEECSCCEEEEEGGGTE---EEETT--------------SCEEECSEEEECSCEE
T ss_pred             HHHHHHHHHHH-HcCCEEEECCeEEEEecCCCE---EEECC--------------CCEEEcCEEEEccCCC
Confidence            33444455554 679999999999998755442   44431              3579999999999944

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.04  E-value=5.8e-05  Score=74.53  Aligned_cols=100  Identities=16%  Similarity=0.119  Sum_probs=72.8

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.|+|||+|..|+.+|..|++. |.+|+++|+.+.+...                                      ...
T Consensus       175 k~vvViGgG~ig~E~A~~l~~~-g~~Vtlv~~~~~~l~~--------------------------------------~d~  215 (492)
T 3ic9_A          175 KSVAVFGPGVIGLELGQALSRL-GVIVKVFGRSGSVANL--------------------------------------QDE  215 (492)
T ss_dssp             SEEEEESSCHHHHHHHHHHHHT-TCEEEEECCTTCCTTC--------------------------------------CCH
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCeEEEEEECCccccc--------------------------------------CCH
Confidence            5799999999999999999999 9999999998653210                                      012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      ++.+.+.+.+. +. ++++++++++++..+++.+. +...+          .+|+..++.+|.||+|+|...
T Consensus       216 ~~~~~l~~~l~-~~-V~i~~~~~v~~i~~~~~~v~-v~~~~----------~~G~~~~i~~D~Vi~a~G~~p  274 (492)
T 3ic9_A          216 EMKRYAEKTFN-EE-FYFDAKARVISTIEKEDAVE-VIYFD----------KSGQKTTESFQYVLAATGRKA  274 (492)
T ss_dssp             HHHHHHHHHHH-TT-SEEETTCEEEEEEECSSSEE-EEEEC----------TTCCEEEEEESEEEECSCCEE
T ss_pred             HHHHHHHHHHh-hC-cEEEECCEEEEEEEcCCEEE-EEEEe----------CCCceEEEECCEEEEeeCCcc
Confidence            34445555554 45 99999999999988776654 33210          012236799999999999543

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.04  E-value=3.7e-05  Score=76.49  Aligned_cols=98  Identities=12%  Similarity=0.163  Sum_probs=72.2

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.++|||+|..|+.+|..|++. |.+|+++|+.+.+...                                      ...
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~-G~~Vtlv~~~~~~l~~--------------------------------------~~~  255 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNAT-GRRTVMLVRTEPLKLI--------------------------------------KDN  255 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSCTTTTC--------------------------------------CSH
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCeEEEEEecCccccc--------------------------------------ccH
Confidence            5799999999999999999999 9999999998642110                                      013


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeC-CeEE--EEEEcceeeecccCCCCCCCCe-EEEcCEEEEcCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-GRVG--GVVTNWALVSMNHDTQSCMDPN-VMEAKVVVSSCGHDG  242 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~-~~v~--gv~~~~~~~~~~~~~~~~g~~~-~i~Ak~VI~AtGg~~  242 (356)
                      .+...+.+.+. +.|++++++++|+++..++ +++.  .+.+.+              +. ++.+|.||+|+|...
T Consensus       256 ~~~~~l~~~l~-~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~--------------G~~~i~aD~Vv~A~G~~p  316 (523)
T 1mo9_A          256 ETRAYVLDRMK-EQGMEIISGSNVTRIEEDANGRVQAVVAMTPN--------------GEMRIETDFVFLGLGEQP  316 (523)
T ss_dssp             HHHHHHHHHHH-HTTCEEESSCEEEEEEECTTSBEEEEEEEETT--------------EEEEEECSCEEECCCCEE
T ss_pred             HHHHHHHHHHH-hCCcEEEECCEEEEEEEcCCCceEEEEEEECC--------------CcEEEEcCEEEECcCCcc
Confidence            34445555554 5799999999999998754 4442  333321              23 799999999999554

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=98.03  E-value=4e-06  Score=81.52  Aligned_cols=40  Identities=23%  Similarity=0.328  Sum_probs=37.3

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~  130 (356)
                      ++||+|||+|++|+++|+.|++. |++|+|+|++..+||.+
T Consensus         6 ~~~v~iiG~G~~gl~~a~~l~~~-g~~v~~~e~~~~~gg~~   45 (433)
T 1d5t_A            6 EYDVIVLGTGLTECILSGIMSVN-GKKVLHMDRNPYYGGES   45 (433)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSCTTS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCccccc
Confidence            58999999999999999999999 99999999998888754

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.03  E-value=3.1e-05  Score=76.25  Aligned_cols=97  Identities=11%  Similarity=0.135  Sum_probs=72.7

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.++|||+|..|+..|..|++. |.+|+++++.+.+...                                      ...
T Consensus       192 ~~v~ViGgG~~g~e~A~~l~~~-g~~Vtli~~~~~~l~~--------------------------------------~~~  232 (484)
T 3o0h_A          192 KSIVIVGGGYIGVEFANIFHGL-GVKTTLLHRGDLILRN--------------------------------------FDY  232 (484)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSSSTT--------------------------------------SCH
T ss_pred             CcEEEECcCHHHHHHHHHHHHc-CCeEEEEECCCccccc--------------------------------------cCH
Confidence            5799999999999999999999 9999999987642100                                      012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      .+...+.+.+. +.|++++++++|+++..+++++ .+.+.+              +.++.+|.||+|+|...
T Consensus       233 ~~~~~l~~~l~-~~Gv~i~~~~~V~~i~~~~~~v-~v~~~~--------------g~~i~aD~Vi~A~G~~p  288 (484)
T 3o0h_A          233 DLRQLLNDAMV-AKGISIIYEATVSQVQSTENCY-NVVLTN--------------GQTICADRVMLATGRVP  288 (484)
T ss_dssp             HHHHHHHHHHH-HHTCEEESSCCEEEEEECSSSE-EEEETT--------------SCEEEESEEEECCCEEE
T ss_pred             HHHHHHHHHHH-HCCCEEEeCCEEEEEEeeCCEE-EEEECC--------------CcEEEcCEEEEeeCCCc
Confidence            33444555554 5699999999999998876665 444432              35799999999999543

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.02  E-value=4.1e-05  Score=74.93  Aligned_cols=95  Identities=9%  Similarity=0.186  Sum_probs=71.6

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.|+|||+|..|+.+|..|++. |.+|+++|+.+.+-.                                       ...
T Consensus       177 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~l~---------------------------------------~~~  216 (467)
T 1zk7_A          177 ERLAVIGSSVVALELAQAFARL-GSKVTVLARNTLFFR---------------------------------------EDP  216 (467)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSCTTTT---------------------------------------SCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHc-CCEEEEEEECCccCC---------------------------------------CCH
Confidence            5799999999999999999999 999999998753210                                       002


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      .+.+.+.+.+. +.|++++++++|+++..+++.+ .+.+.               ..++.+|.||+|+|...
T Consensus       217 ~~~~~l~~~l~-~~Gv~i~~~~~v~~i~~~~~~~-~v~~~---------------~~~i~aD~Vv~a~G~~p  271 (467)
T 1zk7_A          217 AIGEAVTAAFR-AEGIEVLEHTQASQVAHMDGEF-VLTTT---------------HGELRADKLLVATGRTP  271 (467)
T ss_dssp             HHHHHHHHHHH-HTTCEEETTCCEEEEEEETTEE-EEEET---------------TEEEEESEEEECSCEEE
T ss_pred             HHHHHHHHHHH-hCCCEEEcCCEEEEEEEeCCEE-EEEEC---------------CcEEEcCEEEECCCCCc
Confidence            33445555554 5799999999999998766533 34432               25799999999999654

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.02  E-value=2.4e-05  Score=76.55  Aligned_cols=102  Identities=19%  Similarity=0.216  Sum_probs=72.0

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.|+|||+|..|+.+|..|++. |.+|+++|+.+.+...                                      ...
T Consensus       178 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtli~~~~~~l~~--------------------------------------~~~  218 (470)
T 1dxl_A          178 KKLVVIGAGYIGLEMGSVWGRI-GSEVTVVEFASEIVPT--------------------------------------MDA  218 (470)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHH-TCEEEEECSSSSSSTT--------------------------------------SCH
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCcEEEEEcCCccccc--------------------------------------ccH
Confidence            5799999999999999999999 9999999998643210                                      012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      ++.+.+.+.+. +.|++++++++++++..+++.+. +...+      .   .+++..++.+|.||+|+|...
T Consensus       219 ~~~~~l~~~l~-~~gv~i~~~~~v~~i~~~~~~~~-v~~~~------~---~~g~~~~~~~D~vv~a~G~~p  279 (470)
T 1dxl_A          219 EIRKQFQRSLE-KQGMKFKLKTKVVGVDTSGDGVK-LTVEP------S---AGGEQTIIEADVVLVSAGRTP  279 (470)
T ss_dssp             HHHHHHHHHHH-HSSCCEECSEEEEEEECSSSSEE-EEEEE------S---SSCCCEEEEESEEECCCCEEE
T ss_pred             HHHHHHHHHHH-HcCCEEEeCCEEEEEEEcCCeEE-EEEEe------c---CCCcceEEECCEEEECCCCCc
Confidence            33444455554 57999999999999976554432 33221      0   012346799999999999543

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.01  E-value=5.7e-05  Score=74.04  Aligned_cols=99  Identities=14%  Similarity=0.096  Sum_probs=72.0

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.|+|||+|..|+.+|..|++. |.+|+++++.+.+...                                      ...
T Consensus       181 ~~v~ViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~l~~--------------------------------------~~~  221 (476)
T 3lad_A          181 GKLGVIGAGVIGLELGSVWARL-GAEVTVLEAMDKFLPA--------------------------------------VDE  221 (476)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSSSSTT--------------------------------------SCH
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCcCcc--------------------------------------cCH
Confidence            5799999999999999999999 9999999998642110                                      012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~  241 (356)
                      ++.+.+.+.+. +.|++++++++++++..+++.+. +...+      .    ++ ..++.+|.||+|+|..
T Consensus       222 ~~~~~l~~~l~-~~Gv~v~~~~~v~~i~~~~~~~~-v~~~~------~----~g-~~~~~~D~vi~a~G~~  279 (476)
T 3lad_A          222 QVAKEAQKILT-KQGLKILLGARVTGTEVKNKQVT-VKFVD------A----EG-EKSQAFDKLIVAVGRR  279 (476)
T ss_dssp             HHHHHHHHHHH-HTTEEEEETCEEEEEEECSSCEE-EEEES------S----SE-EEEEEESEEEECSCEE
T ss_pred             HHHHHHHHHHH-hCCCEEEECCEEEEEEEcCCEEE-EEEEe------C----CC-cEEEECCEEEEeeCCc
Confidence            34444455554 67999999999999988766554 33321      0    01 2578999999999944

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.01  E-value=5.6e-05  Score=74.01  Aligned_cols=101  Identities=14%  Similarity=0.194  Sum_probs=71.5

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.++|||+|..|+.+|..|++. |.+|+++|+.+.+...                                      ...
T Consensus       175 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~l~~--------------------------------------~d~  215 (468)
T 2qae_A          175 KTMVVIGGGVIGLELGSVWARL-GAEVTVVEFAPRCAPT--------------------------------------LDE  215 (468)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSSSTT--------------------------------------SCH
T ss_pred             ceEEEECCCHHHHHHHHHHHHh-CCEEEEEecCCccccc--------------------------------------CCH
Confidence            5799999999999999999999 9999999998643210                                      012


Q ss_pred             HHHHHHHHHH-HcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          171 LFTSTIMSKL-LARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       171 ~~~~~l~~~~-~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      ++.+.+.+.+ . +.|++++++++|+++..+++.+. +.+..       .   +++..++.+|.||+|+|...
T Consensus       216 ~~~~~l~~~l~~-~~gv~i~~~~~v~~i~~~~~~~~-v~~~~-------~---~g~~~~i~~D~vv~a~G~~p  276 (468)
T 2qae_A          216 DVTNALVGALAK-NEKMKFMTSTKVVGGTNNGDSVS-LEVEG-------K---NGKRETVTCEALLVSVGRRP  276 (468)
T ss_dssp             HHHHHHHHHHHH-HTCCEEECSCEEEEEEECSSSEE-EEEEC-------C------EEEEEESEEEECSCEEE
T ss_pred             HHHHHHHHHHhh-cCCcEEEeCCEEEEEEEcCCeEE-EEEEc-------C---CCceEEEECCEEEECCCccc
Confidence            3344455555 4 57999999999999987655432 33220       0   11236799999999999554

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=98.00  E-value=5.9e-05  Score=74.52  Aligned_cols=98  Identities=16%  Similarity=0.250  Sum_probs=70.0

Q ss_pred             ccEEEECCCHHHHHHHHHhhc----CCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEE
Q 018414           91 TDVVVVGAGSAGLSCAYELSK----NPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVI  166 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~----~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~  166 (356)
                      -.|+|||||..|+.+|..|++    . |.+|+++++...+-...      +                             
T Consensus       181 ~~vvViGgG~iG~E~A~~l~~~~~~~-g~~V~~v~~~~~~~~~~------l-----------------------------  224 (493)
T 1m6i_A          181 KSITIIGGGFLGSELACALGRKARAL-GTEVIQLFPEKGNMGKI------L-----------------------------  224 (493)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHHHH-TCEEEEECSSSSTTTTT------S-----------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhhhhhc-CCEEEEEecCccccccc------C-----------------------------
Confidence            479999999999999999876    4 78999999764321100      0                             


Q ss_pred             echHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          167 KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       167 ~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                        ...+...+.+.+. +.||++++++.|+++..+++.+ .+.+.+              +.++.+|.||+|+|...
T Consensus       225 --~~~~~~~~~~~l~-~~GV~v~~~~~V~~i~~~~~~~-~v~l~d--------------G~~i~aD~Vv~a~G~~p  282 (493)
T 1m6i_A          225 --PEYLSNWTMEKVR-REGVKVMPNAIVQSVGVSSGKL-LIKLKD--------------GRKVETDHIVAAVGLEP  282 (493)
T ss_dssp             --CHHHHHHHHHHHH-TTTCEEECSCCEEEEEEETTEE-EEEETT--------------SCEEEESEEEECCCEEE
T ss_pred             --CHHHHHHHHHHHH-hcCCEEEeCCEEEEEEecCCeE-EEEECC--------------CCEEECCEEEECCCCCc
Confidence              0223334444454 7799999999999998776654 455432              36799999999999543

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.00  E-value=2.2e-05  Score=76.84  Aligned_cols=97  Identities=20%  Similarity=0.181  Sum_probs=68.8

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -+|+|||||.+|+.+|..|++. |.+|+|+|+.+.+...                                      ...
T Consensus       172 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~l~~--------------------------------------~~~  212 (458)
T 1lvl_A          172 QHLVVVGGGYIGLELGIAYRKL-GAQVSVVEARERILPT--------------------------------------YDS  212 (458)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHH-TCEEEEECSSSSSSTT--------------------------------------SCH
T ss_pred             CeEEEECcCHHHHHHHHHHHHC-CCeEEEEEcCCccccc--------------------------------------cCH
Confidence            4799999999999999999999 9999999998643210                                      002


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      ++...+.+.+. +.|++++++++|+++..  +++ .+...            +|+..++.+|.||+|+|...
T Consensus       213 ~~~~~l~~~l~-~~gv~i~~~~~v~~i~~--~~v-~v~~~------------~G~~~~i~~D~vv~a~G~~p  268 (458)
T 1lvl_A          213 ELTAPVAESLK-KLGIALHLGHSVEGYEN--GCL-LANDG------------KGGQLRLEADRVLVAVGRRP  268 (458)
T ss_dssp             HHHHHHHHHHH-HHTCEEETTCEEEEEET--TEE-EEECS------------SSCCCEECCSCEEECCCEEE
T ss_pred             HHHHHHHHHHH-HCCCEEEECCEEEEEEe--CCE-EEEEC------------CCceEEEECCEEEECcCCCc
Confidence            23334444444 56999999999999865  332 22211            12236799999999999544

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.00  E-value=3.9e-05  Score=75.85  Aligned_cols=97  Identities=16%  Similarity=0.210  Sum_probs=72.2

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.++|||+|..|+.+|..|++. |.+|+++|+.+.+...                                      ...
T Consensus       183 ~~vvViGgG~ig~E~A~~l~~~-g~~Vtlv~~~~~~l~~--------------------------------------~d~  223 (499)
T 1xdi_A          183 DHLIVVGSGVTGAEFVDAYTEL-GVPVTVVASQDHVLPY--------------------------------------EDA  223 (499)
T ss_dssp             SSEEEESCSHHHHHHHHHHHHT-TCCEEEECSSSSSSCC--------------------------------------SSH
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCccccc--------------------------------------cCH
Confidence            5799999999999999999999 9999999988643210                                      012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      .+...+.+.+. +.|++++++++|+++..+++++ .+...              +..++.+|.||+|+|...
T Consensus       224 ~~~~~l~~~l~-~~GV~i~~~~~V~~i~~~~~~v-~v~~~--------------~g~~i~aD~Vv~a~G~~p  279 (499)
T 1xdi_A          224 DAALVLEESFA-ERGVRLFKNARAASVTRTGAGV-LVTMT--------------DGRTVEGSHALMTIGSVP  279 (499)
T ss_dssp             HHHHHHHHHHH-HTTCEEETTCCEEEEEECSSSE-EEEET--------------TSCEEEESEEEECCCEEE
T ss_pred             HHHHHHHHHHH-HCCCEEEeCCEEEEEEEeCCEE-EEEEC--------------CCcEEEcCEEEECCCCCc
Confidence            33444555554 6799999999999998766554 23332              236799999999999554

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=97.98  E-value=4.2e-05  Score=74.82  Aligned_cols=98  Identities=7%  Similarity=0.079  Sum_probs=72.3

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~  169 (356)
                      ...++|||+|..|+..|..+++. |.+|+++++.+.+...                                      ..
T Consensus       170 ~~~v~ViGgG~~g~e~A~~l~~~-g~~Vt~v~~~~~~l~~--------------------------------------~~  210 (463)
T 4dna_A          170 PESILIAGGGYIAVEFANIFHGL-GVKTTLIYRGKEILSR--------------------------------------FD  210 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSSSTT--------------------------------------SC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCccccc--------------------------------------cC
Confidence            35799999999999999999999 9999999987642100                                      01


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEE-EcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVV-TNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~-~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      ..+.+.+.+.+. +.|++++++++|+++..+++....+. +.+              +. +.+|.||+|+|...
T Consensus       211 ~~~~~~l~~~l~-~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~--------------g~-i~aD~Vv~a~G~~p  268 (463)
T 4dna_A          211 QDMRRGLHAAME-EKGIRILCEDIIQSVSADADGRRVATTMKH--------------GE-IVADQVMLALGRMP  268 (463)
T ss_dssp             HHHHHHHHHHHH-HTTCEEECSCCEEEEEECTTSCEEEEESSS--------------CE-EEESEEEECSCEEE
T ss_pred             HHHHHHHHHHHH-HCCCEEECCCEEEEEEEcCCCEEEEEEcCC--------------Ce-EEeCEEEEeeCccc
Confidence            233445555554 67999999999999988755433454 431              24 99999999999543

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=97.97  E-value=0.00011  Score=67.68  Aligned_cols=164  Identities=13%  Similarity=0.184  Sum_probs=99.7

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.|+|||+|..|+.+|..|++. +.+|+++++...+..                                       . .
T Consensus       155 ~~v~vvG~g~~~~e~a~~l~~~-~~~v~~~~~~~~~~~---------------------------------------~-~  193 (332)
T 3lzw_A          155 RRVAILGGGDSAVDWALMLEPI-AKEVSIIHRRDKFRA---------------------------------------H-E  193 (332)
T ss_dssp             CEEEEECSSHHHHHHHHHHTTT-BSEEEEECSSSSCSS---------------------------------------C-H
T ss_pred             CEEEEECCCHhHHHHHHHHHhh-CCeEEEEEecCcCCc---------------------------------------c-H
Confidence            4799999999999999999999 999999998754210                                       0 0


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCCCCccch
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK  250 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~~~~~~~  250 (356)
                      .    .++.+. +.|++++.+++++++..+++ +..+...+      ..   .++..++.+|.||+|+|-...     ..
T Consensus       194 ~----~~~~l~-~~gv~~~~~~~v~~i~~~~~-~~~v~~~~------~~---~g~~~~~~~D~vv~a~G~~p~-----~~  253 (332)
T 3lzw_A          194 H----SVENLH-ASKVNVLTPFVPAELIGEDK-IEQLVLEE------VK---GDRKEILEIDDLIVNYGFVSS-----LG  253 (332)
T ss_dssp             H----HHHHHH-HSSCEEETTEEEEEEECSSS-CCEEEEEE------TT---SCCEEEEECSEEEECCCEECC-----CG
T ss_pred             H----HHHHHh-cCCeEEEeCceeeEEecCCc-eEEEEEEe------cC---CCceEEEECCEEEEeeccCCC-----ch
Confidence            0    122233 56999999999999976554 44455432      11   123567999999999994432     12


Q ss_pred             hhhccCcccccccccccccccccceeeeccccccCceeEeceEEEEecCCcccCCccceeeeehHHHHHHHHHHhCCCC
Q 018414          251 RLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPN  329 (356)
Q Consensus       251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~~~~~~~~~~g~~~~~~~~g~~l~sG~~~~~l~l~~~~~~~  329 (356)
                      .+...++..  . ...+..+  +..     +.-.+++|..|..... .+.++   .....+..|..+++.+++.+....
T Consensus       254 ~~~~~~~~~--~-~g~i~vd--~~~-----~t~~~~vya~GD~~~~-~~~~~---~~~~A~~~g~~aa~~i~~~l~~~~  318 (332)
T 3lzw_A          254 PIKNWGLDI--E-KNSIVVK--STM-----ETNIEGFFAAGDICTY-EGKVN---LIASGFGEAPTAVNNAKAYMDPKA  318 (332)
T ss_dssp             GGGGSSCCE--E-TTEEECC--TTS-----BCSSTTEEECGGGEEC-TTCCC---CHHHHHHHHHHHHHHHHHHHCTTS
T ss_pred             HHhhcCccc--c-CCeEEeC--CCC-----ceecCCEEEccceecC-CCCcc---eEeeehhhHHHHHHHHHHhhChhh
Confidence            233333210  0 0111111  111     1123888888865532 11111   112233578999999999997653

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=97.96  E-value=5.7e-05  Score=74.26  Aligned_cols=101  Identities=15%  Similarity=0.142  Sum_probs=70.7

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.++|||+|..|+.+|..|++. |.+|+++++......                                       ...
T Consensus       188 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~l~~---------------------------------------~d~  227 (483)
T 3dgh_A          188 GKTLVVGAGYIGLECAGFLKGL-GYEPTVMVRSIVLRG---------------------------------------FDQ  227 (483)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSCSSTT---------------------------------------SCH
T ss_pred             CcEEEECCCHHHHHHHHHHHHc-CCEEEEEeCCCCCcc---------------------------------------cCH
Confidence            4799999999999999999999 999999997531100                                       012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~  241 (356)
                      ++.+.+.+.+. +.|++++++++++++..+++....+...+      ..   .++..++.+|.||+|+|..
T Consensus       228 ~~~~~l~~~l~-~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~------~~---~~~~~~~~~D~vi~a~G~~  288 (483)
T 3dgh_A          228 QMAELVAASME-ERGIPFLRKTVPLSVEKQDDGKLLVKYKN------VE---TGEESEDVYDTVLWAIGRK  288 (483)
T ss_dssp             HHHHHHHHHHH-HTTCCEEETEEEEEEEECTTSCEEEEEEE------TT---TCCEEEEEESEEEECSCEE
T ss_pred             HHHHHHHHHHH-hCCCEEEeCCEEEEEEEcCCCcEEEEEec------CC---CCceeEEEcCEEEECcccc
Confidence            33444555554 67999999999999987544322344432      11   1224579999999999954

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=97.96  E-value=4.5e-05  Score=75.25  Aligned_cols=99  Identities=12%  Similarity=0.076  Sum_probs=71.5

Q ss_pred             ccEEEECCCHHHHHHHHHhhcC--CCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEec
Q 018414           91 TDVVVVGAGSAGLSCAYELSKN--PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKH  168 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~--~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~  168 (356)
                      -.++|||+|..|+.+|..|++.  +|.+|+++|+.+.+...                                      .
T Consensus       188 ~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~--------------------------------------~  229 (490)
T 1fec_A          188 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRG--------------------------------------F  229 (490)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTT--------------------------------------S
T ss_pred             CeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCcccc--------------------------------------c
Confidence            4799999999999999999874  28999999998642210                                      0


Q ss_pred             hHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          169 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       169 ~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      ..++.+.+.+.+. +.|++++++++|+++..+++....+.+.+              +.++.+|.||+|+|...
T Consensus       230 d~~~~~~l~~~l~-~~GV~i~~~~~v~~i~~~~~~~~~v~~~~--------------G~~i~~D~vv~a~G~~p  288 (490)
T 1fec_A          230 DSELRKQLTEQLR-ANGINVRTHENPAKVTKNADGTRHVVFES--------------GAEADYDVVMLAIGRVP  288 (490)
T ss_dssp             CHHHHHHHHHHHH-HTTEEEEETCCEEEEEECTTSCEEEEETT--------------SCEEEESEEEECSCEEE
T ss_pred             CHHHHHHHHHHHH-hCCCEEEeCCEEEEEEEcCCCEEEEEECC--------------CcEEEcCEEEEccCCCc
Confidence            1233445555554 57999999999999987654333444432              24799999999999543

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=97.94  E-value=5e-05  Score=75.91  Aligned_cols=96  Identities=18%  Similarity=0.215  Sum_probs=72.3

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.++|||||..|+..|..+++. |.+|+|+++......                                       ...
T Consensus       224 ~~lvIIGgG~IGlE~A~~~~~l-G~~VTii~~~~~L~~---------------------------------------~D~  263 (542)
T 4b1b_A          224 GKTLVVGASYVALECSGFLNSL-GYDVTVAVRSIVLRG---------------------------------------FDQ  263 (542)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHH-TCCEEEEESSCSSTT---------------------------------------SCH
T ss_pred             ceEEEECCCHHHHHHHHHHHhc-CCeEEEecccccccc---------------------------------------cch
Confidence            4799999999999999999999 999999987542110                                       013


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      ++...+.+.+. +.|+++++++.++.+...++.+. +...              +...+.+|.|++|+|...
T Consensus       264 ei~~~l~~~l~-~~gi~~~~~~~v~~~~~~~~~~~-v~~~--------------~~~~~~~D~vLvAvGR~P  319 (542)
T 4b1b_A          264 QCAVKVKLYME-EQGVMFKNGILPKKLTKMDDKIL-VEFS--------------DKTSELYDTVLYAIGRKG  319 (542)
T ss_dssp             HHHHHHHHHHH-HTTCEEEETCCEEEEEEETTEEE-EEET--------------TSCEEEESEEEECSCEEE
T ss_pred             hHHHHHHHHHH-hhcceeecceEEEEEEecCCeEE-EEEc--------------CCCeEEEEEEEEcccccC
Confidence            44455555554 67999999999999998887654 3332              235678999999999543

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=97.94  E-value=5.5e-06  Score=81.69  Aligned_cols=41  Identities=46%  Similarity=0.720  Sum_probs=37.6

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~  130 (356)
                      ..+||+|||||++|+++|+.|++. |.+|+|+|+...+||..
T Consensus        32 ~~~~v~IiGaG~~Gl~aA~~l~~~-g~~v~vlE~~~~~gg~~   72 (498)
T 2iid_A           32 NPKHVVIVGAGMAGLSAAYVLAGA-GHQVTVLEASERPGGRV   72 (498)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHH-TCEEEEECSSSSSBTTC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhC-CCeEEEEECCCCCCCce
Confidence            358999999999999999999999 99999999998888754

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=97.94  E-value=5.6e-05  Score=74.71  Aligned_cols=98  Identities=12%  Similarity=0.155  Sum_probs=70.7

Q ss_pred             ccEEEECCCHHHHHHHHHhhcC-C-CCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEec
Q 018414           91 TDVVVVGAGSAGLSCAYELSKN-P-NIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKH  168 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~-~-G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~  168 (356)
                      -.++|||+|..|+.+|..|++. + |.+|+++|+.+.+-..                                      .
T Consensus       192 ~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~--------------------------------------~  233 (495)
T 2wpf_A          192 RRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILRG--------------------------------------F  233 (495)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSCTT--------------------------------------S
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCccccc--------------------------------------c
Confidence            4799999999999999999874 2 8999999987642110                                      0


Q ss_pred             hHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414          169 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       169 ~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~  241 (356)
                      ..++...+.+.+. +.|++++++++|+++..+++....+.+.+              +.++.+|.||+|+|..
T Consensus       234 d~~~~~~l~~~l~-~~GV~i~~~~~v~~i~~~~~~~~~v~~~~--------------G~~i~~D~vv~a~G~~  291 (495)
T 2wpf_A          234 DETIREEVTKQLT-ANGIEIMTNENPAKVSLNTDGSKHVTFES--------------GKTLDVDVVMMAIGRI  291 (495)
T ss_dssp             CHHHHHHHHHHHH-HTTCEEEESCCEEEEEECTTSCEEEEETT--------------SCEEEESEEEECSCEE
T ss_pred             CHHHHHHHHHHHH-hCCCEEEeCCEEEEEEEcCCceEEEEECC--------------CcEEEcCEEEECCCCc
Confidence            1233444555554 67999999999999987654333454432              2479999999999954

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=97.93  E-value=0.00016  Score=70.32  Aligned_cols=140  Identities=11%  Similarity=0.140  Sum_probs=75.2

Q ss_pred             cccEEEECCCHHHHHHHHHhhcC-CCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCc-------cccC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDY-------DEQD  161 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~-~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~-------~~~~  161 (356)
                      ...|+|||+|..|+-+|..|++. ++.+|+++++...+-...  ...+...+ ......+++..+....       ....
T Consensus       227 ~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~~p~~--~~~~~~~~-~~p~~~~~~~~l~~~~~~~~~~~~~~~  303 (463)
T 3s5w_A          227 PMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASALKPAD--DSPFVNEV-FAPKFTDLIYSREHAERERLLREYHNT  303 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSCCBCC--CCHHHHGG-GSHHHHHHHHHSCHHHHHHHHHHTGGG
T ss_pred             CCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCCcCcc--CCccchhc-cChhHHHHHhcCCHHHHHHHHHHhhcc
Confidence            45899999999999999999884 578999999986431000  00000000 0001111111110000       0000


Q ss_pred             CeEEEec--hHHHHHHHH-HHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcC
Q 018414          162 NYVVIKH--AALFTSTIM-SKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSC  238 (356)
Q Consensus       162 ~~~~~~~--~~~~~~~l~-~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~At  238 (356)
                      .|.....  ...+...++ +.+....+++++.+++|+++..+++.+. +.+.+      ..   +|+..++.+|.||+|+
T Consensus       304 ~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~~~~~v~~v~~~~~~~~-v~~~~------~~---~g~~~~~~~D~Vv~At  373 (463)
T 3s5w_A          304 NYSVVDTDLIERIYGVFYRQKVSGIPRHAFRCMTTVERATATAQGIE-LALRD------AG---SGELSVETYDAVILAT  373 (463)
T ss_dssp             TSSCBCHHHHHHHHHHHHHHHHHCCCCSEEETTEEEEEEEEETTEEE-EEEEE------TT---TCCEEEEEESEEEECC
T ss_pred             CCCcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCCEEEEEEecCCEEE-EEEEE------cC---CCCeEEEECCEEEEee
Confidence            1111111  122222333 2333347999999999999988776543 33321      11   1234579999999999


Q ss_pred             CCCC
Q 018414          239 GHDG  242 (356)
Q Consensus       239 Gg~~  242 (356)
                      |...
T Consensus       374 G~~p  377 (463)
T 3s5w_A          374 GYER  377 (463)
T ss_dssp             CEEC
T ss_pred             CCCC
Confidence            9554

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=97.92  E-value=5.7e-05  Score=73.51  Aligned_cols=95  Identities=21%  Similarity=0.257  Sum_probs=69.2

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -+|+|||+|..|+.+|..|++. |.+|+++++.+.+....                                     ...
T Consensus       149 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~l~~~-------------------------------------~~~  190 (449)
T 3kd9_A          149 ENVVIIGGGYIGIEMAEAFAAQ-GKNVTMIVRGERVLRRS-------------------------------------FDK  190 (449)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSSTTTTT-------------------------------------SCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-CCeEEEEEcCCccchhh-------------------------------------cCH
Confidence            4899999999999999999999 99999999986432100                                     013


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~  241 (356)
                      ++...+.+.+. +. +++++++.++++..++ ++..+...               ..++.+|.||+|+|..
T Consensus       191 ~~~~~l~~~l~-~~-v~i~~~~~v~~i~~~~-~v~~v~~~---------------g~~i~~D~Vv~a~G~~  243 (449)
T 3kd9_A          191 EVTDILEEKLK-KH-VNLRLQEITMKIEGEE-RVEKVVTD---------------AGEYKAELVILATGIK  243 (449)
T ss_dssp             HHHHHHHHHHT-TT-SEEEESCCEEEEECSS-SCCEEEET---------------TEEEECSEEEECSCEE
T ss_pred             HHHHHHHHHHH-hC-cEEEeCCeEEEEeccC-cEEEEEeC---------------CCEEECCEEEEeeCCc
Confidence            34444555554 55 9999999999986544 44334332               3679999999999944

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=97.92  E-value=0.00011  Score=72.05  Aligned_cols=103  Identities=13%  Similarity=0.105  Sum_probs=71.9

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.|+|||+|..|+.+|..|++. |.+|+++++.+.+...                                      ...
T Consensus       188 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~l~~--------------------------------------~d~  228 (478)
T 3dk9_A          188 GRSVIVGAGYIAVEMAGILSAL-GSKTSLMIRHDKVLRS--------------------------------------FDS  228 (478)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSSCTT--------------------------------------SCH
T ss_pred             ccEEEECCCHHHHHHHHHHHHc-CCeEEEEEeCCccccc--------------------------------------cCH
Confidence            4799999999999999999999 9999999987642100                                      012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCe-EEEEEEcceeeecccCCCCCCC--CeEEEcCEEEEcCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGR-VGGVVTNWALVSMNHDTQSCMD--PNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~-v~gv~~~~~~~~~~~~~~~~g~--~~~i~Ak~VI~AtGg~~  242 (356)
                      .+.+.+.+.+. +.|++++.++.++++..+++. ...+...+      ..   .++  ..++.+|.||+|+|...
T Consensus       229 ~~~~~~~~~l~-~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~------~~---~g~~~g~~~~~D~vi~a~G~~p  293 (478)
T 3dk9_A          229 MISTNCTEELE-NAGVEVLKFSQVKEVKKTLSGLEVSMVTAV------PG---RLPVMTMIPDVDCLLWAIGRVP  293 (478)
T ss_dssp             HHHHHHHHHHH-HTTCEEETTEEEEEEEECSSSEEEEEEECC------TT---SCCEEEEEEEESEEEECSCEEE
T ss_pred             HHHHHHHHHHH-HCCCEEEeCCEEEEEEEcCCCcEEEEEEcc------CC---CCcccceEEEcCEEEEeecccc
Confidence            33444455554 679999999999999876443 23344321      00   011  16799999999999543

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.91  E-value=3.2e-05  Score=73.44  Aligned_cols=90  Identities=23%  Similarity=0.298  Sum_probs=66.7

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.++|||+|..|+.+|..|++. |.+|+++|+.+.+..  +                                     ..
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~l~--~-------------------------------------~~  183 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAEA-GYHVKLIHRGAMFLG--L-------------------------------------DE  183 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHT-TCEEEEECSSSCCTT--C-------------------------------------CH
T ss_pred             CcEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCCeecc--C-------------------------------------CH
Confidence            4799999999999999999999 999999999864321  0                                     02


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~  241 (356)
                      ++.+.+.+.+. +.|++++++++++++.  .+   ++.+.+              +. +.+|.||+|+|..
T Consensus       184 ~~~~~l~~~l~-~~gV~i~~~~~v~~i~--~~---~v~~~~--------------g~-i~~D~vi~a~G~~  233 (367)
T 1xhc_A          184 ELSNMIKDMLE-ETGVKFFLNSELLEAN--EE---GVLTNS--------------GF-IEGKVKICAIGIV  233 (367)
T ss_dssp             HHHHHHHHHHH-HTTEEEECSCCEEEEC--SS---EEEETT--------------EE-EECSCEEEECCEE
T ss_pred             HHHHHHHHHHH-HCCCEEEcCCEEEEEE--ee---EEEECC--------------CE-EEcCEEEECcCCC
Confidence            33344445554 5699999999999885  22   244432              24 9999999999944

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=97.90  E-value=8.4e-05  Score=68.09  Aligned_cols=164  Identities=19%  Similarity=0.169  Sum_probs=97.9

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~  169 (356)
                      ...|+|||+|..|+.+|..|++. +.+|+++++...+..                                       . 
T Consensus       154 ~~~v~vvG~G~~~~e~a~~l~~~-g~~v~~~~~~~~~~~---------------------------------------~-  192 (323)
T 3f8d_A          154 NRVVAVIGGGDSALEGAEILSSY-STKVYLIHRRDTFKA---------------------------------------Q-  192 (323)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHH-SSEEEEECSSSSCCS---------------------------------------C-
T ss_pred             CCEEEEECCCHHHHHHHHHHHHh-CCeEEEEEeCCCCCc---------------------------------------C-
Confidence            35799999999999999999999 999999998754211                                       0 


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCCCCccc
Q 018414          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGV  249 (356)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~~~~~~  249 (356)
                      .    .+++++.++.|+++++++.++++..+ +++..+.+.+      ..   .|+..++.+|.||+|+|....     .
T Consensus       193 ~----~~~~~~~~~~gv~~~~~~~v~~i~~~-~~~~~v~~~~------~~---~g~~~~~~~D~vv~a~G~~p~-----~  253 (323)
T 3f8d_A          193 P----IYVETVKKKPNVEFVLNSVVKEIKGD-KVVKQVVVEN------LK---TGEIKELNVNGVFIEIGFDPP-----T  253 (323)
T ss_dssp             H----HHHHHHHTCTTEEEECSEEEEEEEES-SSEEEEEEEE------TT---TCCEEEEECSEEEECCCEECC-----H
T ss_pred             H----HHHHHHHhCCCcEEEeCCEEEEEecc-CceeEEEEEE------CC---CCceEEEEcCEEEEEECCCCC-----h
Confidence            1    23444555669999999999999865 5555565542      01   123457999999999994432     2


Q ss_pred             hhhhccCcccccccccccccccccceeeeccccccCceeEeceEEEEecCCcccCCccceeeeehHHHHHHHHHHhC
Q 018414          250 KRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLG  326 (356)
Q Consensus       250 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~~~~~~~~~~g~~~~~~~~g~~l~sG~~~~~l~l~~~~  326 (356)
                      ..+...++.  ......+..+  +..-.     -.+++|..|.....    ..........+..|..+++.+.+.+.
T Consensus       254 ~~~~~~g~~--~~~~g~i~vd--~~~~t-----~~~~vya~GD~~~~----~~~~~~~~~A~~~g~~aa~~i~~~l~  317 (323)
T 3f8d_A          254 DFAKSNGIE--TDTNGYIKVD--EWMRT-----SVPGVFAAGDCTSA----WLGFRQVITAVAQGAVAATSAYRYVT  317 (323)
T ss_dssp             HHHHHTTCC--BCTTSSBCCC--TTCBC-----SSTTEEECSTTBST----TTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHhhcCee--ecCCCcEecC--CCcee-----cCCCEEEcceecCC----CCcccceeehhhHHHHHHHHHHHHHH
Confidence            233333331  0001111111  11101     13778877643211    00011122233678888888888774

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=97.89  E-value=6.6e-05  Score=74.70  Aligned_cols=97  Identities=16%  Similarity=0.205  Sum_probs=72.5

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.|+|||+|..|+-+|..|++. +.+|+++++.+.+..                                       .  
T Consensus       356 k~V~ViGgG~~g~E~A~~L~~~-g~~Vtlv~~~~~l~~---------------------------------------~--  393 (521)
T 1hyu_A          356 KRVAVIGGGNSGVEAAIDLAGI-VEHVTLLEFAPEMKA---------------------------------------D--  393 (521)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHH-BSEEEEECSSSSCCS---------------------------------------C--
T ss_pred             CeEEEECCCHHHHHHHHHHHhh-CCEEEEEEeCcccCc---------------------------------------C--
Confidence            4799999999999999999999 999999998754210                                       0  


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~  241 (356)
                         ..+.+++.+..|++++.++.++++..+++++.++...+.      .   +++..++.+|.||+|+|..
T Consensus       394 ---~~l~~~l~~~~gV~v~~~~~v~~i~~~~~~v~~v~~~~~------~---~g~~~~i~~D~vi~a~G~~  452 (521)
T 1hyu_A          394 ---QVLQDKVRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDR------V---SGDIHSVALAGIFVQIGLL  452 (521)
T ss_dssp             ---HHHHHHHTTCTTEEEECSEEEEEEEECSSSEEEEEEEET------T---TCCEEEEECSEEEECCCEE
T ss_pred             ---HHHHHHHhcCCCcEEEeCCEEEEEEcCCCcEEEEEEEeC------C---CCceEEEEcCEEEECcCCC
Confidence               123344443369999999999999877777777766420      1   1234679999999999944

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=97.88  E-value=9.1e-05  Score=72.95  Aligned_cols=101  Identities=15%  Similarity=0.160  Sum_probs=69.3

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.++|||+|..|+.+|..|++. |.+|+++++......                                       ...
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~-g~~Vtlv~~~~~l~~---------------------------------------~d~  225 (488)
T 3dgz_A          186 GKTLVVGASYVALECAGFLTGI-GLDTTVMMRSIPLRG---------------------------------------FDQ  225 (488)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHT-TCCEEEEESSCSSTT---------------------------------------SCH
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCceEEEEcCccccc---------------------------------------CCH
Confidence            4699999999999999999999 999999998632100                                       012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~  241 (356)
                      ++.+.+.+.+. +.|+++++++.++++...++....+...+      .++   ++..++.+|.||+|+|-.
T Consensus       226 ~~~~~l~~~l~-~~gv~~~~~~~v~~i~~~~~~~~~v~~~~------~~~---g~~~~~~~D~vi~a~G~~  286 (488)
T 3dgz_A          226 QMSSLVTEHME-SHGTQFLKGCVPSHIKKLPTNQLQVTWED------HAS---GKEDTGTFDTVLWAIGRV  286 (488)
T ss_dssp             HHHHHHHHHHH-HTTCEEEETEEEEEEEECTTSCEEEEEEE------TTT---TEEEEEEESEEEECSCEE
T ss_pred             HHHHHHHHHHH-HCCCEEEeCCEEEEEEEcCCCcEEEEEEe------CCC---CeeEEEECCEEEEcccCC
Confidence            33444455554 67999999999999987443222233321      010   122468999999999944

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=97.86  E-value=8e-05  Score=69.25  Aligned_cols=97  Identities=12%  Similarity=0.204  Sum_probs=68.7

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.|+|||+|..|+.+|..|++. +.+|+++++...+..         .                                
T Consensus       156 ~~v~ViG~G~~g~e~a~~l~~~-g~~V~l~~~~~~~~~---------~--------------------------------  193 (335)
T 2a87_A          156 QDIAVIGGGDSAMEEATFLTRF-ARSVTLVHRRDEFRA---------S--------------------------------  193 (335)
T ss_dssp             CEEEEECSSHHHHHHHHHHTTT-CSEEEEECSSSSCSS---------C--------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHh-CCeEEEEEcCCcCCc---------c--------------------------------
Confidence            5799999999999999999999 999999998753210         0                                


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                         +.+.+++.++.|++++++++++++..++ ++.++.+.+.      .   +++..++.+|.||+|+|...
T Consensus       194 ---~~~~~~~~~~~gV~v~~~~~v~~i~~~~-~~~~v~~~~~------~---~g~~~~i~~D~vi~a~G~~p  252 (335)
T 2a87_A          194 ---KIMLDRARNNDKIRFLTNHTVVAVDGDT-TVTGLRVRDT------N---TGAETTLPVTGVFVAIGHEP  252 (335)
T ss_dssp             ---TTHHHHHHHCTTEEEECSEEEEEEECSS-SCCEEEEEEE------T---TSCCEEECCSCEEECSCEEE
T ss_pred             ---HHHHHHHhccCCcEEEeCceeEEEecCC-cEeEEEEEEc------C---CCceEEeecCEEEEccCCcc
Confidence               0112233346799999999999997554 3334444310      0   12346799999999999543

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=97.86  E-value=1e-05  Score=79.37  Aligned_cols=40  Identities=40%  Similarity=0.607  Sum_probs=36.3

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccCCCCCcc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSVSPGGGA  130 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~~~Gg~~  130 (356)
                      .+||+|||+|++|+++|+.|++. |. +|+|+|+...+||.+
T Consensus         4 ~~~~~iiG~G~~g~~~a~~l~~~-g~~~v~~~e~~~~~gg~~   44 (472)
T 1b37_A            4 GPRVIVVGAGMSGISAAKRLSEA-GITDLLILEATDHIGGRM   44 (472)
T ss_dssp             -CCEEEECCBHHHHHHHHHHHHT-TCCCEEEECSSSSSBTTS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhc-CCCceEEEeCCCCCCCce
Confidence            48999999999999999999999 98 899999998888754

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=97.71  E-value=2.7e-05  Score=80.68  Aligned_cols=40  Identities=25%  Similarity=0.439  Sum_probs=37.0

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~  130 (356)
                      .+||+|||||++|+++|+.|++. |++|+|+|+...+||..
T Consensus       389 ~~~VvIIGgGpAGl~aA~~L~~~-G~~Vtlie~~~~~GG~~  428 (729)
T 1o94_A          389 KDSVLIVGAGPSGSEAARVLMES-GYTVHLTDTAEKIGGHL  428 (729)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSTTTTH
T ss_pred             CceEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCCcCCee
Confidence            58999999999999999999999 99999999998887754

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=97.69  E-value=0.00045  Score=63.17  Aligned_cols=97  Identities=19%  Similarity=0.261  Sum_probs=70.0

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.|+|||+|..|+-+|..|++. |.+|+|+|+....-.                                       . .
T Consensus       153 ~~vvViGgG~ig~e~A~~l~~~-G~~Vt~v~~~~~~~~---------------------------------------~-~  191 (314)
T 4a5l_A          153 KVLMVVGGGDAAMEEALHLTKY-GSKVIILHRRDAFRA---------------------------------------S-K  191 (314)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTT-SSEEEEECSSSSCCS---------------------------------------C-H
T ss_pred             CeEEEECCChHHHHHHHHHHHh-CCeeeeecccccccc---------------------------------------c-c
Confidence            4799999999999999999999 999999998643110                                       0 1


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~  241 (356)
                          .+..+.....+++.+..+.+.++...++...++...+      ..   .++..++.+|.|++|+|..
T Consensus       192 ----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~------~~---~~~~~~i~~d~vi~a~G~~  249 (314)
T 4a5l_A          192 ----TMQERVLNHPKIEVIWNSELVELEGDGDLLNGAKIHN------LV---SGEYKVVPVAGLFYAIGHS  249 (314)
T ss_dssp             ----HHHHHHHTCTTEEEECSEEEEEEEESSSSEEEEEEEE------TT---TCCEEEEECSEEEECSCEE
T ss_pred             ----hhhhhhhcccceeeEeeeeeEEEEeeeeccceeEEee------cc---cccceeeccccceEecccc
Confidence                1122233466888888988888887766666665532      11   1245789999999999943

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=97.68  E-value=0.00045  Score=68.61  Aligned_cols=101  Identities=20%  Similarity=0.255  Sum_probs=67.5

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.++|||+|..|+.+|..|++. |.+|+++++......                                       ...
T Consensus       211 ~~vvVIGgG~ig~E~A~~l~~~-G~~Vtlv~~~~~l~~---------------------------------------~d~  250 (519)
T 3qfa_A          211 GKTLVVGASYVALECAGFLAGI-GLDVTVMVRSILLRG---------------------------------------FDQ  250 (519)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHT-TCCEEEEESSCSSTT---------------------------------------SCH
T ss_pred             CeEEEECCcHHHHHHHHHHHHc-CCeEEEEeccccccc---------------------------------------CCH
Confidence            3699999999999999999999 999999998521100                                       012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeC----CeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKG----GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~----~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      ++.+.+.+.+. +.||+++.++.++++...+    +.+. +....      .++   ++..++.+|.||+|+|...
T Consensus       251 ~~~~~~~~~l~-~~GV~v~~~~~v~~v~~~~~~~~~~~~-v~~~~------~~g---~~~~~~~~D~vi~a~G~~p  315 (519)
T 3qfa_A          251 DMANKIGEHME-EHGIKFIRQFVPIKVEQIEAGTPGRLR-VVAQS------TNS---EEIIEGEYNTVMLAIGRDA  315 (519)
T ss_dssp             HHHHHHHHHHH-HTTCEEEESEEEEEEEEEECCTTCEEE-EEEEE------SSS---SCEEEEEESEEEECSCEEE
T ss_pred             HHHHHHHHHHH-HCCCEEEeCCeEEEEEEccCCCCceEE-EEEEE------CCC---cEEEEEECCEEEEecCCcc
Confidence            33444455554 6799999999888886532    3332 22211      010   0124678999999999543

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=97.66  E-value=3.3e-05  Score=79.18  Aligned_cols=39  Identities=26%  Similarity=0.563  Sum_probs=36.4

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG  129 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~  129 (356)
                      .+||+|||+|++|+++|+.|++. |++|+|+|+...+||.
T Consensus       107 ~~~v~viG~G~~gl~~a~~l~~~-g~~v~~~e~~~~~gg~  145 (662)
T 2z3y_A          107 TGKVIIIGSGVSGLAAARQLQSF-GMDVTLLEARDRVGGR  145 (662)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHT-TCEEEEECSSSSSBTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHHC-CCeEEEEecCCCCCCc
Confidence            57999999999999999999999 9999999999888764

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=97.65  E-value=0.00036  Score=68.24  Aligned_cols=99  Identities=19%  Similarity=0.156  Sum_probs=69.2

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.|+|||+|..|+.+|..|++. |.+|+++++.+.+....                                     ...
T Consensus       173 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~l~~~-------------------------------------~d~  214 (466)
T 3l8k_A          173 QDMVIIGAGYIGLEIASIFRLM-GVQTHIIEMLDRALITL-------------------------------------EDQ  214 (466)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSSCTTS-------------------------------------CCH
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCEEEEEEeCCcCCCCC-------------------------------------CCH
Confidence            4799999999999999999999 99999999876432100                                     012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeC-CeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      ++.+.+.+.+  +  ++++.+++++++..++ +.+. +...+          .+|+..++.+|.||+|+|...
T Consensus       215 ~~~~~l~~~l--~--v~i~~~~~v~~i~~~~~~~v~-v~~~~----------~~G~~~~i~~D~vi~a~G~~p  272 (466)
T 3l8k_A          215 DIVNTLLSIL--K--LNIKFNSPVTEVKKIKDDEYE-VIYST----------KDGSKKSIFTNSVVLAAGRRP  272 (466)
T ss_dssp             HHHHHHHHHH--C--CCEECSCCEEEEEEEETTEEE-EEECC----------TTSCCEEEEESCEEECCCEEE
T ss_pred             HHHHHHHhcC--E--EEEEECCEEEEEEEcCCCcEE-EEEEe----------cCCceEEEEcCEEEECcCCCc
Confidence            2333333333  2  9999999999998766 6554 33320          012345899999999999543

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=97.61  E-value=0.00042  Score=64.92  Aligned_cols=104  Identities=15%  Similarity=0.253  Sum_probs=65.5

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.|+|||+|..|+.+|..|++. |.+|+++++...+....                          ++..  +   ....
T Consensus       167 ~~vvVvG~G~~g~e~a~~l~~~-g~~V~lv~~~~~~~~~~--------------------------~d~~--~---~~~~  214 (369)
T 3d1c_A          167 GQYVVIGGNESGFDAAYQLAKN-GSDIALYTSTTGLNDPD--------------------------ADPS--V---RLSP  214 (369)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECC------------------------------------CT--T---SCCH
T ss_pred             CEEEEECCCcCHHHHHHHHHhc-CCeEEEEecCCCCCCCC--------------------------CCCC--c---cCCH
Confidence            4799999999999999999999 99999999875321000                          0000  0   0012


Q ss_pred             HHHHHHHHHHHcCCC-cEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEE-EcCEEEEcCCCCC
Q 018414          171 LFTSTIMSKLLARPN-VKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVM-EAKVVVSSCGHDG  242 (356)
Q Consensus       171 ~~~~~l~~~~~~~~g-v~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i-~Ak~VI~AtGg~~  242 (356)
                      .+.+.+.+.+. +.| ++++.++.++++..+++.+ .+...+              +..+ .+|.||+|+|-..
T Consensus       215 ~~~~~l~~~l~-~~g~v~~~~~~~v~~i~~~~~~~-~v~~~~--------------g~~~~~~d~vi~a~G~~~  272 (369)
T 3d1c_A          215 YTRQRLGNVIK-QGARIEMNVHYTVKDIDFNNGQY-HISFDS--------------GQSVHTPHEPILATGFDA  272 (369)
T ss_dssp             HHHHHHHHHHH-TTCCEEEECSCCEEEEEEETTEE-EEEESS--------------SCCEEESSCCEECCCBCG
T ss_pred             HHHHHHHHHHh-hCCcEEEecCcEEEEEEecCCce-EEEecC--------------CeEeccCCceEEeeccCC
Confidence            23344444444 666 9999999999997666543 333332              1234 4699999999543

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=97.59  E-value=5.2e-05  Score=79.66  Aligned_cols=39  Identities=26%  Similarity=0.563  Sum_probs=36.3

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG  129 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~  129 (356)
                      .+||+|||+|++||++|+.|+++ |++|+|+|+...+||.
T Consensus       278 ~~~v~viG~G~aGl~~A~~l~~~-g~~v~v~E~~~~~GG~  316 (852)
T 2xag_A          278 TGKVIIIGSGVSGLAAARQLQSF-GMDVTLLEARDRVGGR  316 (852)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSSCTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHC-CCcEEEEEecCcCCCc
Confidence            47999999999999999999999 9999999999888864

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=97.58  E-value=0.00014  Score=70.68  Aligned_cols=92  Identities=17%  Similarity=0.231  Sum_probs=65.7

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.++|||||..|+.+|..+++. |.+|+|+|+...+....                                      ..
T Consensus       148 ~~vvViGgG~ig~E~A~~l~~~-g~~Vtlv~~~~~ll~~~--------------------------------------d~  188 (437)
T 4eqs_A          148 DKVLVVGAGYVSLEVLENLYER-GLHPTLIHRSDKINKLM--------------------------------------DA  188 (437)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSCCSTTS--------------------------------------CG
T ss_pred             cEEEEECCccchhhhHHHHHhc-CCcceeeeeeccccccc--------------------------------------cc
Confidence            4799999999999999999999 99999999986432100                                      01


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~  241 (356)
                      ++.+.+.+.+. +.|++++++++|+++.  .+.   +...              +..++.+|.||+|+|..
T Consensus       189 ~~~~~~~~~l~-~~gV~i~~~~~v~~~~--~~~---v~~~--------------~g~~~~~D~vl~a~G~~  239 (437)
T 4eqs_A          189 DMNQPILDELD-KREIPYRLNEEINAIN--GNE---ITFK--------------SGKVEHYDMIIEGVGTH  239 (437)
T ss_dssp             GGGHHHHHHHH-HTTCCEEESCCEEEEE--TTE---EEET--------------TSCEEECSEEEECCCEE
T ss_pred             hhHHHHHHHhh-ccceEEEeccEEEEec--CCe---eeec--------------CCeEEeeeeEEEEecee
Confidence            11223344443 5799999999988763  332   3333              24678999999999944

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=97.57  E-value=4.9e-05  Score=72.69  Aligned_cols=84  Identities=15%  Similarity=0.209  Sum_probs=61.4

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.|+|||+|..|+.+|..|++. |.+|+++|+.+.+....+                                     ..
T Consensus       147 ~~vvVIGgG~~g~E~A~~l~~~-g~~Vtvv~~~~~~l~~~~-------------------------------------~~  188 (385)
T 3klj_A          147 GKAFIIGGGILGIELAQAIIDS-GTPASIGIILEYPLERQL-------------------------------------DR  188 (385)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHH-TCCEEEECSSSSSCTTTS-------------------------------------CH
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-CCeEEEEEcCCccchhhc-------------------------------------CH
Confidence            4799999999999999999999 999999999864321100                                     02


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~  241 (356)
                      .+...+.+.+. +.|+++++++.++++            .                .++.+|.||+|+|..
T Consensus       189 ~~~~~~~~~l~-~~gV~~~~~~~v~~i------------g----------------~~~~~D~vv~a~G~~  230 (385)
T 3klj_A          189 DGGLFLKDKLD-RLGIKIYTNSNFEEM------------G----------------DLIRSSCVITAVGVK  230 (385)
T ss_dssp             HHHHHHHHHHH-TTTCEEECSCCGGGC------------H----------------HHHHHSEEEECCCEE
T ss_pred             HHHHHHHHHHH-hCCCEEEeCCEEEEc------------C----------------eEEecCeEEECcCcc
Confidence            23333444444 679999999876655            1                347799999999943

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.55  E-value=0.00097  Score=67.28  Aligned_cols=99  Identities=16%  Similarity=0.198  Sum_probs=64.8

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.|+|||||..|+-+|..|++. |.+|+++++......                                       ...
T Consensus       287 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~l~~---------------------------------------~d~  326 (598)
T 2x8g_A          287 GKTLVIGASYVALECAGFLASL-GGDVTVMVRSILLRG---------------------------------------FDQ  326 (598)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHT-TCCEEEEESSCSSTT---------------------------------------SCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHc-CCEEEEEECCcCcCc---------------------------------------CCH
Confidence            3799999999999999999999 999999998621100                                       002


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEe------C---CeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVK------G---GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~------~---~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~  241 (356)
                      .+...+.+.+. +.|+++++++.++++...      +   +++. +....      .    +++...+.+|.||+|+|..
T Consensus       327 ~~~~~~~~~l~-~~gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~-v~~~~------~----~g~~~~~~~D~vi~a~G~~  394 (598)
T 2x8g_A          327 QMAEKVGDYME-NHGVKFAKLCVPDEIKQLKVVDTENNKPGLLL-VKGHY------T----DGKKFEEEFETVIFAVGRE  394 (598)
T ss_dssp             HHHHHHHHHHH-HTTCEEEETEEEEEEEEEECCBTTTTBCCEEE-EEEEE------T----TSCEEEEEESEEEECSCEE
T ss_pred             HHHHHHHHHHH-hCCCEEEECCeEEEEEeccccccccCCCceEE-EEEEe------C----CCcEEeccCCEEEEEeCCc
Confidence            22333444444 569999999988887542      2   3332 21110      0    1122345699999999944

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=97.46  E-value=9.9e-05  Score=74.91  Aligned_cols=40  Identities=25%  Similarity=0.338  Sum_probs=38.3

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~  130 (356)
                      +|||+|||+|..|+..|..|++. |++|++|||+...||.+
T Consensus         8 ~~D~~i~GtGl~~~~~a~~~~~~-g~~vl~id~~~~~gg~~   47 (650)
T 1vg0_A            8 DFDVIVIGTGLPESIIAAACSRS-GQRVLHVDSRSYYGGNW   47 (650)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSCGGG
T ss_pred             cCCEEEECCcHHHHHHHHHHHhC-CCEEEEEcCCCcccCcc
Confidence            69999999999999999999999 99999999999999875

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=97.45  E-value=0.00045  Score=68.40  Aligned_cols=100  Identities=18%  Similarity=0.210  Sum_probs=65.1

Q ss_pred             cEEEECCCHHHHHHHHHhhcC-------------CCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCcc
Q 018414           92 DVVVVGAGSAGLSCAYELSKN-------------PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYD  158 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~-------------~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~  158 (356)
                      .++|||||+.|+.+|..|++.             ...+|+|+|..+.+-..                             
T Consensus       219 ~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~il~~-----------------------------  269 (502)
T 4g6h_A          219 SIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVLNM-----------------------------  269 (502)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSSSTT-----------------------------
T ss_pred             ceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEeccccccccC-----------------------------
Confidence            599999999999999888642             03689999998643210                             


Q ss_pred             ccCCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEE-EEEcceeeecccCCCCCCCCeEEEcCEEEEc
Q 018414          159 EQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGG-VVTNWALVSMNHDTQSCMDPNVMEAKVVVSS  237 (356)
Q Consensus       159 ~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g-v~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~A  237 (356)
                               ....+.+.+.+.+. +.||+++++++|+++.  ++.+.. +...++      .    ....++.+|.||.|
T Consensus       270 ---------~~~~~~~~~~~~L~-~~GV~v~~~~~v~~v~--~~~~~~~~~~~dg------~----~~~~~i~ad~viwa  327 (502)
T 4g6h_A          270 ---------FEKKLSSYAQSHLE-NTSIKVHLRTAVAKVE--EKQLLAKTKHEDG------K----ITEETIPYGTLIWA  327 (502)
T ss_dssp             ---------SCHHHHHHHHHHHH-HTTCEEETTEEEEEEC--SSEEEEEEECTTS------C----EEEEEEECSEEEEC
T ss_pred             ---------CCHHHHHHHHHHHH-hcceeeecCceEEEEe--CCceEEEEEecCc------c----cceeeeccCEEEEc
Confidence                     01233344444454 6799999999999884  333322 211110      0    01257999999999


Q ss_pred             CCCCC
Q 018414          238 CGHDG  242 (356)
Q Consensus       238 tGg~~  242 (356)
                      +|-..
T Consensus       328 ~Gv~~  332 (502)
T 4g6h_A          328 TGNKA  332 (502)
T ss_dssp             CCEEC
T ss_pred             cCCcC
Confidence            99443

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=97.38  E-value=0.00011  Score=72.83  Aligned_cols=35  Identities=26%  Similarity=0.438  Sum_probs=32.8

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .+||++|||+|++|+.+|++|++. |.+|+|||++.
T Consensus        10 ~~~d~~iiG~G~~g~~~a~~l~~~-~~~v~~~e~~~   44 (507)
T 1coy_A           10 DRVPALVIGSGYGGAVAALRLTQA-GIPTQIVEMGR   44 (507)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC-CCcEEEEECCC
Confidence            369999999999999999999998 99999999975

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=97.29  E-value=0.0038  Score=57.08  Aligned_cols=97  Identities=15%  Similarity=0.212  Sum_probs=65.7

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.|+|||||..|+-+|..|++. |.+|+|+|+.+.+-.                                       . .
T Consensus       146 k~vvViGgG~ig~E~A~~l~~~-g~~Vtlv~~~~~~~~---------------------------------------~-~  184 (312)
T 4gcm_A          146 KRLFVIGGGDSAVEEGTFLTKF-ADKVTIVHRRDELRA---------------------------------------Q-R  184 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTT-CSEEEEECSSSSCCS---------------------------------------C-H
T ss_pred             CEEEEECCCHHHHHHHHHHHhc-CCEEEEEecccccCc---------------------------------------c-h
Confidence            4799999999999999999999 999999998764211                                       0 0


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~  241 (356)
                      .    ..++..++.++.+.....+......+..........      ..   .++...+.++.|+.+.|..
T Consensus       185 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~---~~~~~~~~~d~v~~~~g~~  242 (312)
T 4gcm_A          185 I----LQDRAFKNDKIDFIWSHTLKSINEKDGKVGSVTLTS------TK---DGSEETHEADGVFIYIGMK  242 (312)
T ss_dssp             H----HHHHHHHCTTEEEECSEEEEEEEEETTEEEEEEEEE------TT---TCCEEEEECSEEEECSCEE
T ss_pred             h----HHHHHHHhcCcceeeecceeeeeccccccccceeee------ec---CCceeEEeeeeEEeecCCC
Confidence            0    011222366788888877777766665443333211      01   1245789999999999944

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.22  E-value=0.00099  Score=71.56  Aligned_cols=104  Identities=18%  Similarity=0.232  Sum_probs=69.4

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      .|+|||||..|+-+|..|.+. |. +|+++++....    .         +..                        ...
T Consensus       334 ~VvVIGgG~~g~e~A~~~~~~-G~~~Vtvv~r~~~~----~---------~~~------------------------~~~  375 (1025)
T 1gte_A          334 AVIVLGAGDTAFDCATSALRC-GARRVFLVFRKGFV----N---------IRA------------------------VPE  375 (1025)
T ss_dssp             EEEEECSSHHHHHHHHHHHHT-TCSEEEEECSSCGG----G---------CCS------------------------CHH
T ss_pred             cEEEECCChHHHHHHHHHHHc-CCCEEEEEEecChh----h---------CCC------------------------CHH
Confidence            899999999999999999999 86 89999987410    0         000                        001


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCC---CCCCCeEEEcCEEEEcCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQ---SCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~---~~g~~~~i~Ak~VI~AtGg~  241 (356)
                      +     ++.+. +.|+++++++.++++..+++++.++.+....  .+.++.   ..++..++.+|.||+|+|..
T Consensus       376 e-----~~~~~-~~Gv~~~~~~~~~~i~~~~g~v~~v~~~~~~--~~~~g~~~~~~g~~~~i~aD~Vi~A~G~~  441 (1025)
T 1gte_A          376 E-----VELAK-EEKCEFLPFLSPRKVIVKGGRIVAVQFVRTE--QDETGKWNEDEDQIVHLKADVVISAFGSV  441 (1025)
T ss_dssp             H-----HHHHH-HTTCEEECSEEEEEEEEETTEEEEEEEEEEE--ECTTSCEEEEEEEEEEEECSEEEECSCEE
T ss_pred             H-----HHHHH-HcCCEEEeCCCceEEEccCCeEEEEEEEEeE--EcCCCCcccCCCceEEEECCEEEECCCCC
Confidence            1     12233 4699999999999998778888877653110  000000   00123579999999999943

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=97.19  E-value=0.001  Score=71.08  Aligned_cols=162  Identities=16%  Similarity=0.193  Sum_probs=96.4

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.|+|||+|..|+.+|..|++. |.+|+|+|+.+.+.                                          .
T Consensus       285 k~vvViGgG~~g~E~A~~L~~~-G~~Vtvv~~~~~~~------------------------------------------~  321 (965)
T 2gag_A          285 ARIAVATTNDSAYELVRELAAT-GGVVAVIDARSSIS------------------------------------------A  321 (965)
T ss_dssp             SSEEEEESSTTHHHHHHHHGGG-TCCSEEEESCSSCC------------------------------------------H
T ss_pred             CeEEEEcCCHHHHHHHHHHHHc-CCcEEEEECCCccc------------------------------------------h
Confidence            4799999999999999999999 99999999875321                                          0


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEe-CCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCCCCccc
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGV  249 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~~~~~~  249 (356)
                      .     .+.+. +.||++++++.++++..+ ++++.++...+.    +.. +.+|+..++.+|.||+|+|-...     .
T Consensus       322 ~-----~~~l~-~~GV~v~~~~~v~~i~~~~~~~v~~v~~~~~----~~~-~~~G~~~~i~~D~Vv~a~G~~P~-----~  385 (965)
T 2gag_A          322 A-----AAQAV-ADGVQVISGSVVVDTEADENGELSAIVVAEL----DEA-RELGGTQRFEADVLAVAGGFNPV-----V  385 (965)
T ss_dssp             H-----HHHHH-HTTCCEEETEEEEEEEECTTSCEEEEEEEEE----CTT-CCEEEEEEEECSEEEEECCEEEC-----C
T ss_pred             h-----HHHHH-hCCeEEEeCCEeEEEeccCCCCEEEEEEEec----ccc-CCCCceEEEEcCEEEECCCcCcC-----h
Confidence            0     12233 569999999999999875 566766665420    000 00012367999999999994322     2


Q ss_pred             hhhhccCcccccccccccccccccceeeeccccccCceeEeceEEEEecCCcccCCccceeeeehHHHHHHHHHHhCCCC
Q 018414          250 KRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPN  329 (356)
Q Consensus       250 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~~~~~~~~~~g~~~~~~~~g~~l~sG~~~~~l~l~~~~~~~  329 (356)
                      ..+...+.        .+.++.....++.  ..-.+++|..|...    +.    +.+...+..|..++..++..++...
T Consensus       386 ~l~~~~~g--------~i~vd~~~~~~v~--~ts~p~IyAaGD~a----~~----~~l~~A~~~G~~aA~~i~~~lg~~~  447 (965)
T 2gag_A          386 HLHSQRQG--------KLDWDTTIHAFVP--ADAVANQHLAGAMT----GR----LDTASALSTGAATGAAAATAAGFAT  447 (965)
T ss_dssp             HHHHHTTC--------CEEEETTTTEEEE--CSCCTTEEECGGGG----TC----CSHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHhCCC--------cEEEcCccccccc--CCCCCCEEEEEecC----Cc----hhHHHHHHHHHHHHHHHHHHcCCCc
Confidence            22222110        1111110010110  01136777766422    11    1122334678889999999887544

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=97.18  E-value=0.0006  Score=66.62  Aligned_cols=105  Identities=16%  Similarity=0.210  Sum_probs=64.6

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~  169 (356)
                      -+|+|||||..|+-+|..+.+. |. +|+++++.....   +..                                  ..
T Consensus       265 k~VvVIGgG~~a~d~A~~~~r~-Ga~~Vtiv~r~~~~~---~p~----------------------------------~~  306 (456)
T 2vdc_G          265 KHVVVLGGGDTAMDCVRTAIRQ-GATSVKCLYRRDRKN---MPG----------------------------------SQ  306 (456)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHT-TCSEEEEECSSCSTT---CSS----------------------------------CH
T ss_pred             CEEEEECCChhHHHHHHHHHHc-CCCEEEEEEeCCccC---CCC----------------------------------CH
Confidence            4799999999999999999998 87 599999875321   000                                  00


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCC------CCCCeEEEcCEEEEcCCC
Q 018414          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQS------CMDPNVMEAKVVVSSCGH  240 (356)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~------~g~~~~i~Ak~VI~AtGg  240 (356)
                      .+     ++.+. +.|+++++++.++++.. ++++.++.+..........++.      .++..++.+|.||+|+|-
T Consensus       307 ~e-----~~~~~-~~Gv~~~~~~~~~~i~~-~g~v~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~aD~Vi~A~G~  376 (456)
T 2vdc_G          307 RE-----VAHAE-EEGVEFIWQAAPEGFTG-DTVVTGVRAVRIHLGVADATGRQTPQVIEGSEFTVQADLVIKALGF  376 (456)
T ss_dssp             HH-----HHHHH-HTTCEEECCSSSCCEEE-EEEEETTEEEEEEEEEEEECTTCCEEEEEEEEEEEECSEEEECSCE
T ss_pred             HH-----HHHHH-HCCCEEEeCCCceEEeC-CCcEEEEEEEEEEecccCCcCCccccccCCcEEEEECCEEEECCCC
Confidence            11     12233 45899999988888864 4555444332100000000000      112367999999999994

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=97.13  E-value=0.00015  Score=74.49  Aligned_cols=36  Identities=31%  Similarity=0.571  Sum_probs=33.3

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCC--------CeEEEEeccC-CC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPN--------IQIAIIEQSV-SP  126 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G--------~~V~llEk~~-~~  126 (356)
                      ..+|+|||||++||++|+.|++. |        ++|+|+|+.. .+
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~~-g~~~~~~~~~~V~v~E~~~~r~  100 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGRL-AATLPAGSGIDVQIYEADPDSF  100 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHH-HTTSCTTCEEEEEEECCCTTBG
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc-CcccccCCCceEEEEeccCccc
Confidence            36899999999999999999998 7        9999999998 77

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=97.12  E-value=0.00059  Score=61.62  Aligned_cols=85  Identities=9%  Similarity=0.054  Sum_probs=61.0

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~  169 (356)
                      ...|+|||+|..|+.+|..|++. | +|+++++....          +                                
T Consensus       141 ~~~v~vvG~G~~~~e~a~~l~~~-g-~v~~v~~~~~~----------~--------------------------------  176 (297)
T 3fbs_A          141 QGKIGVIAASPMAIHHALMLPDW-G-ETTFFTNGIVE----------P--------------------------------  176 (297)
T ss_dssp             TCEEEEECCSTTHHHHHHHGGGT-S-EEEEECTTTCC----------C--------------------------------
T ss_pred             CCEEEEEecCccHHHHHHHhhhc-C-cEEEEECCCCC----------C--------------------------------
Confidence            35799999999999999999999 8 99999876420          0                                


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~  241 (356)
                         ...+.+.+. +.|++++. ++++++..++    .+...+              ..++.+|.||+|+|..
T Consensus       177 ---~~~~~~~l~-~~gv~i~~-~~v~~i~~~~----~v~~~~--------------g~~~~~D~vi~a~G~~  225 (297)
T 3fbs_A          177 ---DADQHALLA-ARGVRVET-TRIREIAGHA----DVVLAD--------------GRSIALAGLFTQPKLR  225 (297)
T ss_dssp             ---CHHHHHHHH-HTTCEEEC-SCEEEEETTE----EEEETT--------------SCEEEESEEEECCEEE
T ss_pred             ---CHHHHHHHH-HCCcEEEc-ceeeeeecCC----eEEeCC--------------CCEEEEEEEEEccCcc
Confidence               011223333 56999986 7888875322    444432              3679999999999944

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.10  E-value=0.0041  Score=60.73  Aligned_cols=58  Identities=16%  Similarity=0.119  Sum_probs=36.5

Q ss_pred             CCcEEEcCeEEEEEEEeC-C-eEEEEEEcceeeecccCCC-----CCCCCeEEEcCEEEEcCCCCCC
Q 018414          184 PNVKLFNAVAAEDLIVKG-G-RVGGVVTNWALVSMNHDTQ-----SCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       184 ~gv~i~~~~~v~~i~~~~-~-~v~gv~~~~~~~~~~~~~~-----~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      .|+++++++.++++..++ + ++.++.+....  +....+     .+++..++.++.||.|+|-.+.
T Consensus       270 ~gv~~~~~~~~~~i~~~~~~~~v~~v~~~~~~--l~~~~~~~~~~~~g~~~~i~~d~Vi~a~G~~p~  334 (460)
T 1cjc_A          270 RAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTR--LEGIGEATRAVPTGDVEDLPCGLVLSSIGYKSR  334 (460)
T ss_dssp             EEEEEECSEEEEEEEECTTSSSEEEEEEEEEE--EESSGGGCEEEEEEEEEEEECSEEEECCCEECC
T ss_pred             ceEEEECCCChheEEcCCCCceEEEEEEEEEE--EccccCCCcccCCCceEEEEcCEEEECCCCCCC
Confidence            789999999999987653 5 67666653100  000000     0112367999999999995543

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=96.67  E-value=0.0075  Score=58.78  Aligned_cols=34  Identities=24%  Similarity=0.375  Sum_probs=28.6

Q ss_pred             ccEEEECCCHHHHHHHHHhhcC-------------------CC-CeEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKN-------------------PN-IQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~-------------------~G-~~V~llEk~~  124 (356)
                      -.|+|||+|..|+-+|..|++.                   .+ .+|+|+++..
T Consensus       148 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~  201 (456)
T 1lqt_A          148 ARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRG  201 (456)
T ss_dssp             SEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCC
Confidence            4799999999999999999862                   14 4999999875

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=96.65  E-value=0.0028  Score=65.54  Aligned_cols=33  Identities=18%  Similarity=0.170  Sum_probs=30.7

Q ss_pred             ccEEEEC--CCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           91 TDVVVVG--AGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIG--gG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      -.|+|||  ||..|+-+|..|++. |.+|+|+++.+
T Consensus       529 k~VvVIG~GgG~~g~e~A~~l~~~-G~~Vtlv~~~~  563 (729)
T 1o94_A          529 KRVVILNADTYFMAPSLAEKLATA-GHEVTIVSGVH  563 (729)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHT-TCEEEEEESSC
T ss_pred             CeEEEEcCCCCchHHHHHHHHHHc-CCEEEEEeccc
Confidence            4799998  999999999999999 99999999875

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=96.61  E-value=0.0047  Score=61.60  Aligned_cols=34  Identities=21%  Similarity=0.336  Sum_probs=31.7

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS  125 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~  125 (356)
                      -.|+|||+|..|+-+|..|++. +.+|+++++.+.
T Consensus       179 krV~VIG~G~sgve~a~~l~~~-~~~Vtv~~r~~~  212 (540)
T 3gwf_A          179 RRVGVIGTGSTGQQVITSLAPE-VEHLTVFVRTPQ  212 (540)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTT-CSEEEEEESSCC
T ss_pred             ceEEEECCCchHHHHHHHHHhh-CCEEEEEECCCC
Confidence            4799999999999999999999 999999999864

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=96.50  E-value=0.002  Score=64.39  Aligned_cols=34  Identities=15%  Similarity=0.317  Sum_probs=31.7

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS  125 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~  125 (356)
                      -.|+|||+|..|+-+|..|++. +.+|+++++.+.
T Consensus       186 krV~VIG~G~tgve~a~~la~~-~~~Vtv~~r~~~  219 (545)
T 3uox_A          186 KRVGVIGTGATGVQIIPIAAET-AKELYVFQRTPN  219 (545)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTT-BSEEEEEESSCC
T ss_pred             CeEEEECCCccHHHHHHHHHhh-CCEEEEEEcCCC
Confidence            4799999999999999999999 999999999874

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=96.47  E-value=0.012  Score=60.05  Aligned_cols=28  Identities=25%  Similarity=0.423  Sum_probs=24.5

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEE
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAI  119 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~l  119 (356)
                      -.|+|||||..|+-+|..|++. |.+|++
T Consensus       495 ~~VvVIGgG~~g~E~A~~l~~~-G~~vtv  522 (671)
T 1ps9_A          495 NKVAIIGCGGIGFDTAMYLSQP-GESTSQ  522 (671)
T ss_dssp             SEEEEECCHHHHHHHHHHHTCC-SSCGGG
T ss_pred             CeEEEECCChhHHHHHHHHHhc-CCCccc
Confidence            5799999999999999999998 876653

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=96.46  E-value=0.0069  Score=59.09  Aligned_cols=34  Identities=15%  Similarity=0.098  Sum_probs=31.4

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS  125 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~  125 (356)
                      -.|+|||+|.+|+-+|..|++. |.+|+++++...
T Consensus       198 k~VvVVG~G~sg~eiA~~l~~~-g~~V~li~~~~~  231 (464)
T 2xve_A          198 KTVLLVGSSYSAEDIGSQCYKY-GAKKLISCYRTA  231 (464)
T ss_dssp             SEEEEECCSTTHHHHHHHHHHT-TCSEEEEECSSC
T ss_pred             CEEEEEcCCCCHHHHHHHHHHh-CCeEEEEEECCC
Confidence            4799999999999999999999 999999998754

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=96.44  E-value=0.006  Score=59.03  Aligned_cols=34  Identities=21%  Similarity=0.109  Sum_probs=31.0

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCe-EEEEeccC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQ-IAIIEQSV  124 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~-V~llEk~~  124 (356)
                      .-+|+|||+|.+|+-+|..|++. +.+ |+++++..
T Consensus       212 ~k~VvVvG~G~sg~e~A~~l~~~-~~~~V~l~~r~~  246 (447)
T 2gv8_A          212 GESVLVVGGASSANDLVRHLTPV-AKHPIYQSLLGG  246 (447)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTTT-SCSSEEEECTTC
T ss_pred             CCEEEEEccCcCHHHHHHHHHHH-hCCcEEEEeCCC
Confidence            35799999999999999999999 888 99999874

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=96.25  E-value=0.014  Score=53.21  Aligned_cols=90  Identities=14%  Similarity=0.111  Sum_probs=62.7

Q ss_pred             ccEEEECCCH-HHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414           91 TDVVVVGAGS-AGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (356)
Q Consensus        91 ~DVvIIGgG~-aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~  169 (356)
                      ..++|||||. +++.+|..+.+. +.+|+++++.....                                          
T Consensus       147 ~~~~VIggG~~~~~e~a~~~~~~-~~~v~i~~~~~~~~------------------------------------------  183 (304)
T 4fk1_A          147 QPLIIISENEDHTLHMTKLVYNW-STDLVIATNGNELS------------------------------------------  183 (304)
T ss_dssp             SCEEEECCSHHHHHHHHHHHTTT-CSCEEEECSSCCCC------------------------------------------
T ss_pred             CceeeecCCCchhhhHHHHHHhC-CceEEEEeccccch------------------------------------------
Confidence            4688888886 567888888878 99999998764210                                          


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                          ..+.+.+. +.|++++.+ .++.+..+++++..+...+              +.++.++.+|++.|+..+
T Consensus       184 ----~~~~~~l~-~~g~~~~~~-~v~~~~~~~~~~~~v~~~~--------------g~~i~~~~~vi~~g~~~~  237 (304)
T 4fk1_A          184 ----QTIMDELS-NKNIPVITE-SIRTLQGEGGYLKKVEFHS--------------GLRIERAGGFIVPTFFRP  237 (304)
T ss_dssp             ----HHHHHHHH-TTTCCEECS-CEEEEESGGGCCCEEEETT--------------SCEECCCEEEECCEEECS
T ss_pred             ----hhhhhhhh-ccceeEeee-eEEEeecCCCeeeeeeccc--------------cceeeecceeeeeccccC
Confidence                11233343 668888887 4667766666777776642              467889999999986654

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=96.19  E-value=0.017  Score=53.21  Aligned_cols=32  Identities=25%  Similarity=0.368  Sum_probs=29.0

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      -.|+|||+|..|+-+|..|++. + +|+++++..
T Consensus       164 ~~v~VvG~G~~g~e~a~~l~~~-~-~v~~v~~~~  195 (357)
T 4a9w_A          164 MRVAIIGGGNSGAQILAEVSTV-A-ETTWITQHE  195 (357)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTT-S-EEEEECSSC
T ss_pred             CEEEEECCCcCHHHHHHHHHhh-C-CEEEEECCC
Confidence            5799999999999999999998 7 799998873

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=96.10  E-value=0.017  Score=57.57  Aligned_cols=34  Identities=24%  Similarity=0.424  Sum_probs=31.7

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS  125 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~  125 (356)
                      -.|+|||+|..|+-+|..|++. +.+|+++++.+.
T Consensus       192 krV~VIG~G~sgve~a~~l~~~-~~~Vtv~~r~~~  225 (549)
T 4ap3_A          192 KRVGVIGTGSSGIQSIPIIAEQ-AEQLFVFQRSAN  225 (549)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-BSEEEEEESSCC
T ss_pred             CEEEEECCCchHHHHHHHHHhh-CCEEEEEECCCC
Confidence            5799999999999999999999 999999999864

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=95.54  E-value=0.038  Score=52.53  Aligned_cols=51  Identities=14%  Similarity=0.140  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          172 FTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       172 ~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      +.+.+.+.+. +.||+++++++|+++..  +.   +...+              +.++.+|.||+|+|...
T Consensus       220 ~~~~~~~~l~-~~gV~~~~~~~v~~i~~--~~---v~~~~--------------g~~~~~D~vi~a~G~~~  270 (409)
T 3h8l_A          220 SRKAVASIYN-QLGIKLVHNFKIKEIRE--HE---IVDEK--------------GNTIPADITILLPPYTG  270 (409)
T ss_dssp             HHHHHHHHHH-HHTCEEECSCCEEEECS--SE---EEETT--------------SCEEECSEEEEECCEEC
T ss_pred             HHHHHHHHHH-HCCCEEEcCCceEEECC--Ce---EEECC--------------CCEEeeeEEEECCCCCc
Confidence            3344444444 56999999999988842  32   44432              36799999999999543

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=95.49  E-value=0.061  Score=51.71  Aligned_cols=104  Identities=13%  Similarity=0.181  Sum_probs=59.3

Q ss_pred             cEEEECCCHH----H--HHHH----HHhhcCCCCe-----EEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCC
Q 018414           92 DVVVVGAGSA----G--LSCA----YELSKNPNIQ-----IAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID  156 (356)
Q Consensus        92 DVvIIGgG~a----G--l~aA----~~La~~~G~~-----V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~  156 (356)
                      .++|||+|+.    |  +..|    ..+.+. |.+     |+++++.+.++.... .+                      
T Consensus       151 ~~vVVGgG~~~g~~G~~~E~a~~la~~l~~~-g~~~~~~~Vtlv~~~~~~~~~~l-~~----------------------  206 (437)
T 3sx6_A          151 GPIVIGAMAGASCFGPAYEYAMIVASDLKKR-GMRDKIPSFTFITSEPYIGHLGI-QG----------------------  206 (437)
T ss_dssp             CCEEEEECTTCCCCHHHHHHHHHHHHHHHHT-TCGGGCSCEEEEESSSSTTCTTT-TC----------------------
T ss_pred             CEEEEEcCCCCCcCcHHHHHHHHHHHHHHHc-CCcccCcEEEEEcCCcccccccc-Cc----------------------
Confidence            5799999664    3  4444    556666 765     999998865432000 00                      


Q ss_pred             ccccCCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEE
Q 018414          157 YDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVS  236 (356)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~  236 (356)
                            .      ......+.+.+ ++.||+++++++++++.  ++.+.-....        .++..++..++.+|.||+
T Consensus       207 ------~------~~~~~~~~~~l-~~~gI~~~~~~~v~~v~--~~~v~~~~~~--------~~g~~~~~~~i~~D~vv~  263 (437)
T 3sx6_A          207 ------V------GDSKGILTKGL-KEEGIEAYTNCKVTKVE--DNKMYVTQVD--------EKGETIKEMVLPVKFGMM  263 (437)
T ss_dssp             ------C------TTHHHHHHHHH-HHTTCEEECSEEEEEEE--TTEEEEEEEC--------TTSCEEEEEEEECSEEEE
T ss_pred             ------c------hHHHHHHHHHH-HHCCCEEEcCCEEEEEE--CCeEEEEecc--------cCCccccceEEEEeEEEE
Confidence                  0      01122233334 36799999999999885  3433211111        000000146799999999


Q ss_pred             cCCCCC
Q 018414          237 SCGHDG  242 (356)
Q Consensus       237 AtGg~~  242 (356)
                      |+|-.+
T Consensus       264 ~~g~~~  269 (437)
T 3sx6_A          264 IPAFKG  269 (437)
T ss_dssp             ECCEEC
T ss_pred             cCCCcC
Confidence            998443

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=94.71  E-value=0.036  Score=45.21  Aligned_cols=33  Identities=18%  Similarity=0.323  Sum_probs=30.6

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      ..|+|+|+|..|..+|..|.+. |.+|+++++..
T Consensus        20 ~~v~IiG~G~iG~~la~~L~~~-g~~V~vid~~~   52 (155)
T 2g1u_A           20 KYIVIFGCGRLGSLIANLASSS-GHSVVVVDKNE   52 (155)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCG
T ss_pred             CcEEEECCCHHHHHHHHHHHhC-CCeEEEEECCH
Confidence            5799999999999999999999 99999999874

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=94.70  E-value=0.034  Score=44.38  Aligned_cols=33  Identities=21%  Similarity=0.429  Sum_probs=30.5

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      ..++|+|+|..|...|..|.++ |++|+++|+.+
T Consensus         7 ~~v~I~G~G~iG~~la~~L~~~-g~~V~~id~~~   39 (141)
T 3llv_A            7 YEYIVIGSEAAGVGLVRELTAA-GKKVLAVDKSK   39 (141)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHT-TCCEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCeEEEEECCH
Confidence            3699999999999999999999 99999999864

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=94.64  E-value=0.036  Score=43.80  Aligned_cols=33  Identities=24%  Similarity=0.437  Sum_probs=30.2

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      ..|+|||+|..|...|..|.+. |.+|+++|+..
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~-g~~v~~~d~~~   37 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEK-GHDIVLIDIDK   37 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCeEEEEECCH
Confidence            4699999999999999999999 99999999863

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=94.44  E-value=0.051  Score=43.54  Aligned_cols=33  Identities=27%  Similarity=0.415  Sum_probs=30.8

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      -.|+|+|.|..|...|..|.+. |++|+++|++.
T Consensus         8 ~~viIiG~G~~G~~la~~L~~~-g~~v~vid~~~   40 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKLLAS-DIPLVVIETSR   40 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHT-TCCEEEEESCH
T ss_pred             CCEEEECcCHHHHHHHHHHHHC-CCCEEEEECCH
Confidence            4799999999999999999999 99999999874

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=94.16  E-value=0.057  Score=43.86  Aligned_cols=32  Identities=13%  Similarity=0.317  Sum_probs=30.1

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEecc
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~  123 (356)
                      -.++|+|+|..|...|..|.+. |.+|+++|+.
T Consensus         4 ~~vlI~G~G~vG~~la~~L~~~-g~~V~vid~~   35 (153)
T 1id1_A            4 DHFIVCGHSILAINTILQLNQR-GQNVTVISNL   35 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHT-TCCEEEEECC
T ss_pred             CcEEEECCCHHHHHHHHHHHHC-CCCEEEEECC
Confidence            4799999999999999999999 9999999986

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=93.72  E-value=0.07  Score=40.65  Aligned_cols=33  Identities=24%  Similarity=0.416  Sum_probs=29.9

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCC-CeEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPN-IQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G-~~V~llEk~~  124 (356)
                      ..|+|+|+|..|..++..|.+. | .+|+++++..
T Consensus         6 ~~v~I~G~G~iG~~~~~~l~~~-g~~~v~~~~r~~   39 (118)
T 3ic5_A            6 WNICVVGAGKIGQMIAALLKTS-SNYSVTVADHDL   39 (118)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHC-SSEEEEEEESCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-CCceEEEEeCCH
Confidence            4699999999999999999999 8 8999999863

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=93.71  E-value=0.059  Score=42.65  Aligned_cols=32  Identities=22%  Similarity=0.316  Sum_probs=29.5

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .|+|+|+|..|...|..|.+. |.+|+++++..
T Consensus         8 ~v~I~G~G~iG~~~a~~l~~~-g~~v~~~d~~~   39 (144)
T 2hmt_A            8 QFAVIGLGRFGGSIVKELHRM-GHEVLAVDINE   39 (144)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT-TCCCEEEESCH
T ss_pred             cEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            599999999999999999999 99999999863

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=92.91  E-value=0.088  Score=48.92  Aligned_cols=34  Identities=15%  Similarity=0.346  Sum_probs=30.6

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~  124 (356)
                      ...|.|||+|..|...|..|++. |+ +|+++|...
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la~~-g~~~V~L~D~~~   43 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCALR-ELADVVLYDVVK   43 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHH-TCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-CCCeEEEEECCh
Confidence            35799999999999999999998 87 999999874

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=92.89  E-value=0.09  Score=50.95  Aligned_cols=33  Identities=21%  Similarity=0.284  Sum_probs=30.6

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      ..|.|||.|.+|+++|..|.++ |++|++.|+..
T Consensus        10 k~v~viG~G~sG~s~A~~l~~~-G~~V~~~D~~~   42 (451)
T 3lk7_A           10 KKVLVLGLARSGEAAARLLAKL-GAIVTVNDGKP   42 (451)
T ss_dssp             CEEEEECCTTTHHHHHHHHHHT-TCEEEEEESSC
T ss_pred             CEEEEEeeCHHHHHHHHHHHhC-CCEEEEEeCCc
Confidence            5799999999999999999999 99999999854

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=92.81  E-value=0.15  Score=49.18  Aligned_cols=58  Identities=12%  Similarity=0.078  Sum_probs=47.6

Q ss_pred             hHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEe--CCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          169 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVK--GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       169 ~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~--~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      ...+.+.|.+.+. +.|++++++++|++|..+  ++++.+|.+.               ..+++||.||+|+|.+.
T Consensus       241 ~~~l~~al~~~~~-~~G~~i~~~~~V~~i~~~~~~~~~~~V~~~---------------g~~~~ad~VV~a~~~~~  300 (453)
T 2bcg_G          241 LGELPQGFARLSA-IYGGTYMLDTPIDEVLYKKDTGKFEGVKTK---------------LGTFKAPLVIADPTYFP  300 (453)
T ss_dssp             TTHHHHHHHHHHH-HTTCEEECSCCCCEEEEETTTTEEEEEEET---------------TEEEECSCEEECGGGCG
T ss_pred             HHHHHHHHHHHHH-HcCCEEECCCEEEEEEEECCCCeEEEEEEC---------------CeEEECCEEEECCCccc
Confidence            3567788777776 569999999999999998  8888888763               36799999999999764

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=92.67  E-value=0.086  Score=48.73  Aligned_cols=33  Identities=24%  Similarity=0.436  Sum_probs=30.6

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      -.|.|||+|..|...|..++.. |++|+|+|..+
T Consensus         7 ~~VaViGaG~MG~giA~~~a~~-G~~V~l~D~~~   39 (319)
T 3ado_A            7 GDVLIVGSGLVGRSWAMLFASG-GFRVKLYDIEP   39 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCCEEEECSCH
T ss_pred             CeEEEECCcHHHHHHHHHHHhC-CCeEEEEECCH
Confidence            4799999999999999999999 99999999764

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=92.45  E-value=0.94  Score=43.19  Aligned_cols=46  Identities=17%  Similarity=0.096  Sum_probs=32.0

Q ss_pred             cCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          182 ARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       182 ~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      ++.||++++++.|+++.  .+++.   ..+          .+++..++.+|.||+|+|..+
T Consensus       211 ~~~GV~~~~~~~v~~v~--~~~~~---~~~----------~~g~~~~i~~d~vi~~~G~~~  256 (430)
T 3hyw_A          211 AERNIDWIANVAVKAIE--PDKVI---YED----------LNGNTHEVPAKFTMFMPSFQG  256 (430)
T ss_dssp             HHTTCEEECSCEEEEEC--SSEEE---EEC----------TTSCEEEEECSEEEEECEEEC
T ss_pred             HhCCeEEEeCceEEEEe--CCceE---EEe----------eCCCceEeecceEEEeccCCC
Confidence            46799999999999874  34332   211          012357899999999999544

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=92.15  E-value=0.12  Score=49.71  Aligned_cols=58  Identities=14%  Similarity=0.113  Sum_probs=47.2

Q ss_pred             hHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          169 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       169 ~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      ...+.+.|.+.+. +.|++++++++|++|..+++++.+|..+               +.+++||.||+|+|...
T Consensus       233 ~~~l~~~l~~~~~-~~G~~i~~~~~V~~I~~~~~~v~~v~~~---------------g~~~~ad~VV~a~~~~~  290 (433)
T 1d5t_A          233 LGELPQGFARLSA-IYGGTYMLNKPVDDIIMENGKVVGVKSE---------------GEVARCKQLICDPSYVP  290 (433)
T ss_dssp             TTHHHHHHHHHHH-HHTCCCBCSCCCCEEEEETTEEEEEEET---------------TEEEECSEEEECGGGCG
T ss_pred             HHHHHHHHHHHHH-HcCCEEECCCEEEEEEEeCCEEEEEEEC---------------CeEEECCEEEECCCCCc
Confidence            3567777777665 5699999999999999999988887652               36799999999999664

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=92.04  E-value=1.4  Score=43.11  Aligned_cols=34  Identities=24%  Similarity=0.447  Sum_probs=29.2

Q ss_pred             ccEEEECCCHHHHHHHHHhhcC-CCCeEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~-~G~~V~llEk~~  124 (356)
                      ..|+|||+|.+|.-.+..|++. ++.+|.++-|..
T Consensus       247 KrV~VVG~G~SA~ei~~~L~~~~~~~~v~~~~R~~  281 (501)
T 4b63_A          247 YNIAVLGSGQSAAEIFHDLQKRYPNSRTTLIMRDS  281 (501)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSTTCEEEEECSSS
T ss_pred             cEEEEECCcHHHHHHHHHHHhcCCCceEEEEeCCC
Confidence            4699999999999999999862 378999998875

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=91.67  E-value=0.15  Score=44.59  Aligned_cols=33  Identities=18%  Similarity=0.342  Sum_probs=30.5

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEecc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~  123 (356)
                      ...|+|||||..|...+..|.+. |.+|+|++..
T Consensus        31 gk~VLVVGgG~va~~ka~~Ll~~-GA~VtVvap~   63 (223)
T 3dfz_A           31 GRSVLVVGGGTIATRRIKGFLQE-GAAITVVAPT   63 (223)
T ss_dssp             TCCEEEECCSHHHHHHHHHHGGG-CCCEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCEEEEECCC
Confidence            46899999999999999999999 9999999865

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=91.66  E-value=0.14  Score=44.17  Aligned_cols=32  Identities=16%  Similarity=0.333  Sum_probs=29.9

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .|+|+|+|..|...|..|.+. |.+|+++|+..
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~-g~~v~vid~~~   33 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSR-KYGVVIINKDR   33 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHT-TCCEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCeEEEEECCH
Confidence            589999999999999999999 99999999864

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=91.59  E-value=0.17  Score=46.57  Aligned_cols=33  Identities=21%  Similarity=0.396  Sum_probs=30.5

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      ..|.|||+|..|...|..|++. |.+|+++.+..
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~-g~~V~~~~r~~   35 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKT-GHCVSVVSRSD   35 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHT-TCEEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHhC-CCeEEEEeCCh
Confidence            4799999999999999999999 99999999864

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=91.41  E-value=0.19  Score=47.81  Aligned_cols=35  Identities=29%  Similarity=0.472  Sum_probs=32.2

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSP  126 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~  126 (356)
                      -.|+|||+|..|+.+|..|++. |.+|+++|+.+.+
T Consensus       153 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtvv~~~~~~  187 (415)
T 3lxd_A          153 KNAVVIGGGYIGLEAAAVLTKF-GVNVTLLEALPRV  187 (415)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHhc-CCeEEEEecCCch
Confidence            5799999999999999999999 9999999998654

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=91.28  E-value=0.17  Score=45.71  Aligned_cols=33  Identities=21%  Similarity=0.410  Sum_probs=30.4

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      ..|.|||+|..|...|..|++. |++|+++|+..
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~-G~~V~l~d~~~   37 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFH-GFAVTAYDINT   37 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            3699999999999999999999 99999999874

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=90.81  E-value=0.18  Score=46.19  Aligned_cols=33  Identities=21%  Similarity=0.359  Sum_probs=30.0

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      ..|.|||+|..|.+.|..|++. |.+|+++.+..
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~-g~~V~~~~r~~   35 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRS-GEDVHFLLRRD   35 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHT-SCCEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHHC-CCeEEEEEcCc
Confidence            4699999999999999999999 99999999864

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=90.56  E-value=0.47  Score=46.55  Aligned_cols=60  Identities=10%  Similarity=0.045  Sum_probs=42.1

Q ss_pred             HHHHHHcCCCcEEEcCeEEEEEEEeC-C-eEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          176 IMSKLLARPNVKLFNAVAAEDLIVKG-G-RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       176 l~~~~~~~~gv~i~~~~~v~~i~~~~-~-~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      ++..+.+..|++|+.++.|++|+.++ + +++||.+.+      .+ +..+...+++|+.||+|+|+++
T Consensus       232 ~l~~a~~~~n~~i~~~~~v~~i~~~~~g~~~~gV~~~~------~~-g~~~~~~~~~A~~VIlaaGa~~  293 (507)
T 1coy_A          232 YLAQAAATGKLTITTLHRVTKVAPATGSGYSVTMEQID------EQ-GNVVATKVVTADRVFFAAGSVG  293 (507)
T ss_dssp             HHHHHHHTTCEEEECSEEEEEEEECSSSSEEEEEEEEC------TT-SCEEEEEEEEEEEEEECSHHHH
T ss_pred             HHHHHHhcCCcEEEeCCEEEEEEECCCCCEEEEEEEeC------CC-CcccccEEEEeCEEEEccCccC
Confidence            34444446679999999999999986 4 789988742      00 0000136789999999999763

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=90.54  E-value=0.16  Score=45.91  Aligned_cols=34  Identities=21%  Similarity=0.598  Sum_probs=31.0

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      ...|+|||||-.|...+..|.+. |.+|+|++...
T Consensus        13 ~k~VLVVGgG~va~rka~~Ll~~-Ga~VtViap~~   46 (274)
T 1kyq_A           13 DKRILLIGGGEVGLTRLYKLMPT-GCKLTLVSPDL   46 (274)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGGG-TCEEEEEEEEE
T ss_pred             CCEEEEECCcHHHHHHHHHHHhC-CCEEEEEcCCC
Confidence            35799999999999999999999 99999999764

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=90.32  E-value=0.29  Score=44.42  Aligned_cols=32  Identities=22%  Similarity=0.387  Sum_probs=29.9

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .|.|||+|..|...|..|++. |++|+++|+..
T Consensus        17 ~I~VIG~G~mG~~iA~~la~~-G~~V~~~d~~~   48 (302)
T 1f0y_A           17 HVTVIGGGLMGAGIAQVAAAT-GHTVVLVDQTE   48 (302)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCeEEEEECCH
Confidence            599999999999999999999 99999999864

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=90.18  E-value=0.21  Score=44.27  Aligned_cols=34  Identities=21%  Similarity=0.500  Sum_probs=30.7

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~  124 (356)
                      ...|+|||+|..|..+|..|++. |. +++|+|+..
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~-Gv~~i~lvD~d~   65 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASA-GVGNLTLLDFDT   65 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHH-TCSEEEEECCCB
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHc-CCCeEEEEcCCC
Confidence            36799999999999999999998 86 899999874

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=90.17  E-value=0.21  Score=48.49  Aligned_cols=33  Identities=27%  Similarity=0.481  Sum_probs=30.6

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      ..|+|+|+|-.|...|..|.+. |++|++||+.+
T Consensus         4 M~iiI~G~G~vG~~la~~L~~~-~~~v~vId~d~   36 (461)
T 4g65_A            4 MKIIILGAGQVGGTLAENLVGE-NNDITIVDKDG   36 (461)
T ss_dssp             EEEEEECCSHHHHHHHHHTCST-TEEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCCEEEEECCH
Confidence            4699999999999999999999 99999999864

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=90.10  E-value=0.29  Score=46.61  Aligned_cols=35  Identities=20%  Similarity=0.315  Sum_probs=31.5

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      ....|+|||+|.+|+.+|..|... |.+|+++|+..
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~l-Ga~V~v~D~~~  223 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRL-GAVVSATDVRP  223 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSST
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEcCCH
Confidence            346899999999999999999989 99999999874

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=90.09  E-value=0.3  Score=45.20  Aligned_cols=33  Identities=18%  Similarity=0.430  Sum_probs=30.3

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~  124 (356)
                      ..|.|||+|..|...|..|++. |+ +|+++|...
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~-g~~~V~L~Di~~   48 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQK-DLGDVYMFDIIE   48 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCCEEEEECSST
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCCeEEEEECCH
Confidence            4799999999999999999999 88 999999864

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=90.06  E-value=0.28  Score=45.37  Aligned_cols=32  Identities=25%  Similarity=0.395  Sum_probs=29.8

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEecc
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~  123 (356)
                      ..|.|||+|..|...|..|++. |.+|+++++.
T Consensus         4 mkI~IiGaG~~G~~~a~~L~~~-g~~V~~~~r~   35 (335)
T 3ghy_A            4 TRICIVGAGAVGGYLGARLALA-GEAINVLARG   35 (335)
T ss_dssp             CCEEEESCCHHHHHHHHHHHHT-TCCEEEECCH
T ss_pred             CEEEEECcCHHHHHHHHHHHHC-CCEEEEEECh
Confidence            4799999999999999999999 9999999985

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=90.04  E-value=0.28  Score=44.80  Aligned_cols=33  Identities=27%  Similarity=0.530  Sum_probs=30.1

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCC--eEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~--~V~llEk~~  124 (356)
                      ..|+|||+|..|...|..|++. |.  +|+++++..
T Consensus         8 mkI~IiGaG~vG~~~a~~l~~~-g~~~~V~l~d~~~   42 (319)
T 1lld_A            8 TKLAVIGAGAVGSTLAFAAAQR-GIAREIVLEDIAK   42 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCCCEEEEEeCCh
Confidence            4799999999999999999998 88  999999864

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=89.76  E-value=0.22  Score=48.03  Aligned_cols=35  Identities=26%  Similarity=0.595  Sum_probs=31.2

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSP  126 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~  126 (356)
                      ..|+|||.|.+|+++|..|.++ |++|++.|.....
T Consensus         6 ~~v~viG~G~~G~~~a~~l~~~-G~~v~~~D~~~~~   40 (439)
T 2x5o_A            6 KNVVIIGLGLTGLSCVDFFLAR-GVTPRVMDTRMTP   40 (439)
T ss_dssp             CCEEEECCHHHHHHHHHHHHTT-TCCCEEEESSSSC
T ss_pred             CEEEEEeecHHHHHHHHHHHhC-CCEEEEEECCCCc
Confidence            3699999999999999999999 9999999987543

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=89.63  E-value=0.22  Score=39.88  Aligned_cols=33  Identities=15%  Similarity=0.293  Sum_probs=29.6

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      ..|+|||+|..|...+..|.+. |.+|+++++..
T Consensus        22 ~~v~iiG~G~iG~~~a~~l~~~-g~~v~v~~r~~   54 (144)
T 3oj0_A           22 NKILLVGNGMLASEIAPYFSYP-QYKVTVAGRNI   54 (144)
T ss_dssp             CEEEEECCSHHHHHHGGGCCTT-TCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCEEEEEcCCH
Confidence            5799999999999999999888 89999998863

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=89.57  E-value=0.34  Score=43.31  Aligned_cols=32  Identities=19%  Similarity=0.227  Sum_probs=29.8

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .|.|||+|..|...|..|++. |.+|+++++..
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~-g~~V~~~~r~~   33 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQ-GHEVQGWLRVP   33 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSC
T ss_pred             eEEEECcCHHHHHHHHHHHhC-CCCEEEEEcCc
Confidence            489999999999999999999 99999999875

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=89.18  E-value=0.3  Score=46.21  Aligned_cols=35  Identities=29%  Similarity=0.486  Sum_probs=31.7

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccC
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~  124 (356)
                      .+..|+|+|+|.+|+.+|..|... |. +|.++|+..
T Consensus       187 ~d~kVVi~GAGaAG~~iA~ll~~~-Ga~~I~v~D~~G  222 (398)
T 2a9f_A          187 DEVSIVVNGGGSAGLSITRKLLAA-GATKVTVVDKFG  222 (398)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHH-TCCEEEEEETTE
T ss_pred             CccEEEEECCCHHHHHHHHHHHHc-CCCeEEEEECCC
Confidence            457899999999999999999888 88 999999974

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=89.06  E-value=0.43  Score=43.80  Aligned_cols=33  Identities=27%  Similarity=0.333  Sum_probs=30.7

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCC-CeEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPN-IQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G-~~V~llEk~~  124 (356)
                      ..|.|||.|..|...|..|++. | .+|+++++..
T Consensus        25 m~IgvIG~G~mG~~lA~~L~~~-G~~~V~~~dr~~   58 (317)
T 4ezb_A           25 TTIAFIGFGEAAQSIAGGLGGR-NAARLAAYDLRF   58 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT-TCSEEEEECGGG
T ss_pred             CeEEEECccHHHHHHHHHHHHc-CCCeEEEEeCCC
Confidence            4799999999999999999999 9 9999999874

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=88.95  E-value=0.37  Score=45.12  Aligned_cols=33  Identities=27%  Similarity=0.377  Sum_probs=30.1

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      -.|+|+|+|.+|..++..|... |.+|+++++..
T Consensus       168 ~~VlViGaGgvG~~aa~~a~~~-Ga~V~v~dr~~  200 (361)
T 1pjc_A          168 GKVVILGGGVVGTEAAKMAVGL-GAQVQIFDINV  200 (361)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCH
Confidence            5799999999999999999999 99999999863

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=88.93  E-value=0.36  Score=47.14  Aligned_cols=34  Identities=18%  Similarity=0.351  Sum_probs=31.1

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      ...|.|||.|..|+..|..|++. |.+|+++++..
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~-G~~V~~~d~~~   41 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADI-GHDVFCLDVDQ   41 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             CceEEEECcCHHHHHHHHHHHhC-CCEEEEEECCH
Confidence            35899999999999999999999 99999999863

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=88.92  E-value=0.45  Score=40.79  Aligned_cols=34  Identities=9%  Similarity=0.241  Sum_probs=30.9

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS  125 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~  125 (356)
                      ..|.|||+|..|...|..|++. |.+|.++++...
T Consensus        20 ~~I~iiG~G~mG~~la~~l~~~-g~~V~~~~~~~~   53 (209)
T 2raf_A           20 MEITIFGKGNMGQAIGHNFEIA-GHEVTYYGSKDQ   53 (209)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECTTCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCCHH
Confidence            4699999999999999999999 999999998753

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=88.90  E-value=0.24  Score=44.91  Aligned_cols=33  Identities=27%  Similarity=0.533  Sum_probs=30.2

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      ..|.|||+|..|.+.|..|++. |.+|++++|..
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~-g~~V~~~~r~~   35 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQS-LPHTTLIGRHA   35 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHH-CTTCEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHC-CCeEEEEEecc
Confidence            3699999999999999999999 89999999873

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=88.86  E-value=0.29  Score=46.24  Aligned_cols=34  Identities=18%  Similarity=0.234  Sum_probs=30.9

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      ...|+|||+|..|+.+|..|... |.+|+++|+..
T Consensus       184 ~~kV~ViG~G~iG~~aa~~a~~l-Ga~V~v~D~~~  217 (381)
T 3p2y_A          184 PASALVLGVGVAGLQALATAKRL-GAKTTGYDVRP  217 (381)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHH-TCEEEEECSSG
T ss_pred             CCEEEEECchHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            45899999999999999999888 99999999874

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=88.72  E-value=0.4  Score=43.34  Aligned_cols=32  Identities=22%  Similarity=0.402  Sum_probs=29.7

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .|.|||+|..|...|..|++. |.+|+++++..
T Consensus         5 ~i~iiG~G~~G~~~a~~l~~~-g~~V~~~~r~~   36 (316)
T 2ew2_A            5 KIAIAGAGAMGSRLGIMLHQG-GNDVTLIDQWP   36 (316)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             eEEEECcCHHHHHHHHHHHhC-CCcEEEEECCH
Confidence            699999999999999999999 99999999863

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=88.68  E-value=0.45  Score=44.53  Aligned_cols=33  Identities=21%  Similarity=0.370  Sum_probs=30.6

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      ..|.|||+|.-|.+.|..|+++ |.+|.++++.+
T Consensus        30 mkI~VIGaG~mG~alA~~La~~-G~~V~l~~r~~   62 (356)
T 3k96_A           30 HPIAILGAGSWGTALALVLARK-GQKVRLWSYES   62 (356)
T ss_dssp             SCEEEECCSHHHHHHHHHHHTT-TCCEEEECSCH
T ss_pred             CeEEEECccHHHHHHHHHHHHC-CCeEEEEeCCH
Confidence            5799999999999999999999 99999999863

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=88.67  E-value=0.42  Score=43.59  Aligned_cols=32  Identities=31%  Similarity=0.613  Sum_probs=29.3

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      ..|.|||+|..|.+.|..|+ . |.+|+++.+..
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~-g~~V~~~~r~~   34 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-L-YHDVTVVTRRQ   34 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-T-TSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHh-c-CCceEEEECCH
Confidence            47999999999999999999 8 99999999864

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=88.57  E-value=0.39  Score=45.75  Aligned_cols=34  Identities=24%  Similarity=0.337  Sum_probs=30.4

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      ...|+|||+|.+|+.++..|... |.+|+++|+..
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~-Ga~V~v~D~~~  205 (401)
T 1x13_A          172 PAKVMVIGAGVAGLAAIGAANSL-GAIVRAFDTRP  205 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCCH
Confidence            35799999999999999999888 99999999864

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=88.49  E-value=0.42  Score=44.19  Aligned_cols=33  Identities=18%  Similarity=0.238  Sum_probs=30.2

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      ..|.|||+|..|...|..|++. |.+|+++++..
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~-g~~V~~~~r~~   37 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALK-GQSVLAWDIDA   37 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCH
Confidence            4799999999999999999999 99999999853

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=88.48  E-value=0.49  Score=43.50  Aligned_cols=32  Identities=25%  Similarity=0.587  Sum_probs=30.0

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCC-eEEEEecc
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQS  123 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~  123 (356)
                      ..|.|||+|..|..+|+.|++. |+ +|+++|..
T Consensus         9 ~kv~ViGaG~vG~~ia~~l~~~-g~~~v~l~D~~   41 (315)
T 3tl2_A            9 KKVSVIGAGFTGATTAFLLAQK-ELADVVLVDIP   41 (315)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCCEEEEECCG
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCCeEEEEecc
Confidence            5799999999999999999999 88 99999987

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=88.25  E-value=0.38  Score=44.22  Aligned_cols=33  Identities=33%  Similarity=0.651  Sum_probs=28.8

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCC--eEEEEecc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQS  123 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~--~V~llEk~  123 (356)
                      ...|+|||+|..|..+|+.|+.. +.  .+.++|..
T Consensus         6 ~~KI~IIGaG~vG~~la~~l~~~-~~~~ei~L~Di~   40 (317)
T 3d0o_A            6 GNKVVLIGNGAVGSSYAFSLVNQ-SIVDELVIIDLD   40 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHH-CSCSEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-CCCCEEEEEeCC
Confidence            36899999999999999999987 64  89999864

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=88.17  E-value=0.45  Score=43.41  Aligned_cols=32  Identities=25%  Similarity=0.476  Sum_probs=29.2

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCC--eEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~--~V~llEk~~  124 (356)
                      .|+|||+|..|...|+.|+.. |.  +|.++|...
T Consensus         2 kI~VIGaG~vG~~la~~la~~-g~~~eV~L~D~~~   35 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLR-GSCSELVLVDRDE   35 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCCCEEEEEeCCH
Confidence            589999999999999999998 88  999999764

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=88.14  E-value=0.47  Score=42.49  Aligned_cols=32  Identities=19%  Similarity=0.360  Sum_probs=29.6

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEecc
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~  123 (356)
                      ..++|+|+|.+|..+|..|++. |.+|+++.|.
T Consensus       120 k~vlViGaGg~g~a~a~~L~~~-G~~V~v~~R~  151 (271)
T 1nyt_A          120 LRILLIGAGGASRGVLLPLLSL-DCAVTITNRT  151 (271)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSS
T ss_pred             CEEEEECCcHHHHHHHHHHHHc-CCEEEEEECC
Confidence            4699999999999999999999 8999999876

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=88.04  E-value=0.4  Score=45.29  Aligned_cols=35  Identities=23%  Similarity=0.360  Sum_probs=31.5

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccC
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~  124 (356)
                      .+..|+|+|+|.+|..+|..|... |. +|+++|+..
T Consensus       191 ~~~kVVv~GAGaAG~~iAkll~~~-G~~~I~v~Dr~G  226 (388)
T 1vl6_A          191 EEVKVVVNGIGAAGYNIVKFLLDL-GVKNVVAVDRKG  226 (388)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHH-TCCEEEEEETTE
T ss_pred             CCcEEEEECCCHHHHHHHHHHHhC-CCCeEEEEECCC
Confidence            467899999999999999999988 87 899999873

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=88.03  E-value=0.38  Score=43.25  Aligned_cols=33  Identities=24%  Similarity=0.402  Sum_probs=29.9

Q ss_pred             ccEEEECC-CHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           91 TDVVVVGA-GSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGg-G~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      ..|.|||+ |..|...|..|.+. |++|+++++..
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~-g~~V~~~~r~~   45 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDS-AHHLAAIEIAP   45 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHS-SSEEEEECCSH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhC-CCEEEEEECCH
Confidence            36999999 99999999999999 99999998763

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=88.02  E-value=0.47  Score=44.85  Aligned_cols=34  Identities=21%  Similarity=0.296  Sum_probs=30.6

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      ...|+|+|+|.+|+.++..|... |.+|+++|+..
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~-Ga~V~~~d~~~  205 (384)
T 1l7d_A          172 PARVLVFGVGVAGLQAIATAKRL-GAVVMATDVRA  205 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            45799999999999999999888 99999999864

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=88.01  E-value=0.45  Score=46.03  Aligned_cols=33  Identities=27%  Similarity=0.399  Sum_probs=30.5

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      ..|.|||.|..|+..|..|++. |++|+++++..
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~-G~~V~~~D~~~   35 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAEL-GANVRCIDTDR   35 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHhc-CCEEEEEECCH
Confidence            3699999999999999999999 99999999864

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=87.93  E-value=0.4  Score=39.87  Aligned_cols=34  Identities=24%  Similarity=0.208  Sum_probs=29.0

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      -.|+|+|.|..|..+|..|.+..|.+|+++|+..
T Consensus        40 ~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~   73 (183)
T 3c85_A           40 AQVLILGMGRIGTGAYDELRARYGKISLGIEIRE   73 (183)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred             CcEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence            4699999999999999999763168999999874

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=87.71  E-value=0.74  Score=44.88  Aligned_cols=44  Identities=9%  Similarity=0.129  Sum_probs=32.9

Q ss_pred             CCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414          183 RPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       183 ~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~  241 (356)
                      +.|+++++++.|+++..+ +++.++...              +..++.+|.||+|+|-.
T Consensus       269 ~~GV~v~~~~~v~~i~~~-~~v~~v~~~--------------~g~~i~aD~Vv~a~G~~  312 (493)
T 1y56_A          269 RWGIDYVHIPNVKRVEGN-EKVERVIDM--------------NNHEYKVDALIFADGRR  312 (493)
T ss_dssp             HHTCEEEECSSEEEEECS-SSCCEEEET--------------TCCEEECSEEEECCCEE
T ss_pred             hCCcEEEeCCeeEEEecC-CceEEEEeC--------------CCeEEEeCEEEECCCcC
Confidence            459999999999998754 345455543              23679999999999944

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=87.68  E-value=0.5  Score=43.54  Aligned_cols=33  Identities=21%  Similarity=0.401  Sum_probs=29.8

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~  124 (356)
                      ..|.|||+|..|..+|..|+.. |+ +|.++|...
T Consensus         5 ~kI~VIGaG~vG~~ia~~la~~-g~~~v~L~Di~~   38 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIVQK-NLGDVVLFDIVK   38 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCCeEEEEeCCH
Confidence            4799999999999999999998 87 999999764

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=87.61  E-value=0.51  Score=44.31  Aligned_cols=34  Identities=24%  Similarity=0.374  Sum_probs=30.5

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      ...|+|+|+|..|..+|..|... |.+|+++++..
T Consensus       166 ~~~V~ViGaG~iG~~~a~~l~~~-Ga~V~~~d~~~  199 (369)
T 2eez_A          166 PASVVILGGGTVGTNAAKIALGM-GAQVTILDVNH  199 (369)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-CCEEEEEECCH
Confidence            35799999999999999999999 99999999763

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=87.49  E-value=0.46  Score=43.55  Aligned_cols=33  Identities=24%  Similarity=0.559  Sum_probs=30.1

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~  124 (356)
                      ..|.|||+|..|...|..|++. |+ +|+++|+..
T Consensus         5 ~kI~VIGaG~~G~~ia~~la~~-g~~~V~l~D~~~   38 (317)
T 2ewd_A            5 RKIAVIGSGQIGGNIAYIVGKD-NLADVVLFDIAE   38 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-TCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCceEEEEeCCc
Confidence            4699999999999999999998 88 999999864

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=87.46  E-value=0.53  Score=45.01  Aligned_cols=33  Identities=15%  Similarity=0.353  Sum_probs=30.6

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      ..|+|||.|..|...|..|.+. |.+|++||++.
T Consensus         5 ~~viIiG~Gr~G~~va~~L~~~-g~~vvvId~d~   37 (413)
T 3l9w_A            5 MRVIIAGFGRFGQITGRLLLSS-GVKMVVLDHDP   37 (413)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHT-TCCEEEEECCH
T ss_pred             CeEEEECCCHHHHHHHHHHHHC-CCCEEEEECCH
Confidence            4699999999999999999999 99999999864

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=87.16  E-value=0.61  Score=42.90  Aligned_cols=33  Identities=24%  Similarity=0.510  Sum_probs=29.6

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCC--eEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~--~V~llEk~~  124 (356)
                      ..|.|||+|..|..+|+.|+.. +.  ++.++|...
T Consensus         8 ~KI~IiGaG~vG~~~a~~l~~~-~~~~ev~L~Di~~   42 (318)
T 1y6j_A            8 SKVAIIGAGFVGASAAFTMALR-QTANELVLIDVFK   42 (318)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT-TCSSEEEEECCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCCCEEEEEeCCh
Confidence            6899999999999999999998 77  899999764

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=87.11  E-value=0.58  Score=43.10  Aligned_cols=33  Identities=27%  Similarity=0.369  Sum_probs=30.6

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEecc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~  123 (356)
                      +..|.|||+|..|...|..|++. |.+|.++++.
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~~-G~~V~~~~r~   46 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHEN-GEEVILWARR   46 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHhC-CCeEEEEeCC
Confidence            46899999999999999999999 9999999885

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=87.01  E-value=0.63  Score=42.33  Aligned_cols=34  Identities=24%  Similarity=0.378  Sum_probs=30.5

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      ++..|.|||+|..|...|..|+ . |++|+++|+..
T Consensus        11 ~~~~V~vIG~G~MG~~iA~~la-a-G~~V~v~d~~~   44 (293)
T 1zej_A           11 HHMKVFVIGAGLMGRGIAIAIA-S-KHEVVLQDVSE   44 (293)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHH-T-TSEEEEECSCH
T ss_pred             CCCeEEEEeeCHHHHHHHHHHH-c-CCEEEEEECCH
Confidence            3568999999999999999999 8 99999999864

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=86.86  E-value=0.58  Score=45.40  Aligned_cols=32  Identities=25%  Similarity=0.422  Sum_probs=29.9

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .|.|||+|..|...|..|++. |++|+++|+..
T Consensus        39 kV~VIGaG~MG~~iA~~la~~-G~~V~l~D~~~   70 (463)
T 1zcj_A           39 SVGVLGLGTMGRGIAISFARV-GISVVAVESDP   70 (463)
T ss_dssp             EEEEECCSHHHHHHHHHHHTT-TCEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCeEEEEECCH
Confidence            599999999999999999999 99999999864

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=86.77  E-value=0.37  Score=41.63  Aligned_cols=33  Identities=24%  Similarity=0.355  Sum_probs=29.3

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEE-EeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAI-IEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~l-lEk~~  124 (356)
                      ..|.|||+|..|...|..|++. |.+|++ +++..
T Consensus        24 mkI~IIG~G~mG~~la~~l~~~-g~~V~~v~~r~~   57 (220)
T 4huj_A           24 TTYAIIGAGAIGSALAERFTAA-QIPAIIANSRGP   57 (220)
T ss_dssp             CCEEEEECHHHHHHHHHHHHHT-TCCEEEECTTCG
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCEEEEEECCCH
Confidence            4799999999999999999999 999998 77653

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=86.49  E-value=0.62  Score=42.66  Aligned_cols=31  Identities=23%  Similarity=0.412  Sum_probs=28.5

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEecc
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~  123 (356)
                      ..|.|||+|..|...|..|++. |.+|+++ +.
T Consensus        20 ~kI~IiGaGa~G~~~a~~L~~~-G~~V~l~-~~   50 (318)
T 3hwr_A           20 MKVAIMGAGAVGCYYGGMLARA-GHEVILI-AR   50 (318)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHT-TCEEEEE-CC
T ss_pred             CcEEEECcCHHHHHHHHHHHHC-CCeEEEE-Ec
Confidence            4699999999999999999999 9999999 54

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=86.49  E-value=0.68  Score=44.73  Aligned_cols=35  Identities=14%  Similarity=0.348  Sum_probs=32.1

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS  125 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~  125 (356)
                      ...+.|||.|..|+..|..|++. |++|+++++...
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~-G~~V~~~D~~~~   42 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDF-GHEVVCVDKDAR   42 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCST
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHC-CCEEEEEeCCHH
Confidence            36799999999999999999999 999999998753

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=86.38  E-value=0.65  Score=43.74  Aligned_cols=34  Identities=29%  Similarity=0.527  Sum_probs=30.4

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      ...|+|||+|..|..+|..|... |.+|+++++..
T Consensus       168 g~~V~ViG~G~iG~~~a~~a~~~-Ga~V~~~d~~~  201 (377)
T 2vhw_A          168 PADVVVIGAGTAGYNAARIANGM-GATVTVLDINI  201 (377)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCH
Confidence            35799999999999999999988 99999999763

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=86.30  E-value=0.76  Score=41.24  Aligned_cols=34  Identities=26%  Similarity=0.534  Sum_probs=30.7

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      ...++|||+|.+|.++++.|.+. |.+|.|+.|..
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~-G~~v~V~nRt~  151 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQ-GLQVSVLNRSS  151 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            35799999999999999999999 89999998874

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=86.27  E-value=0.69  Score=42.95  Aligned_cols=33  Identities=18%  Similarity=0.472  Sum_probs=29.9

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS  125 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~  125 (356)
                      .|+|+|||..|..+++.+.+. |++|+++|..+.
T Consensus         3 ~I~ilGgg~~g~~~~~~Ak~~-G~~vv~vd~~~~   35 (363)
T 4ffl_A            3 TICLVGGKLQGFEAAYLSKKA-GMKVVLVDKNPQ   35 (363)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEEESCTT
T ss_pred             EEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCCC
Confidence            489999999999999999889 999999997653

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=86.23  E-value=0.63  Score=42.66  Aligned_cols=33  Identities=21%  Similarity=0.427  Sum_probs=30.7

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      ..|.|||.|..|...|..|++. |++|+++++..
T Consensus        32 ~~I~iIG~G~mG~~~a~~l~~~-G~~V~~~dr~~   64 (320)
T 4dll_A           32 RKITFLGTGSMGLPMARRLCEA-GYALQVWNRTP   64 (320)
T ss_dssp             SEEEEECCTTTHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             CEEEEECccHHHHHHHHHHHhC-CCeEEEEcCCH
Confidence            4799999999999999999999 99999999864

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=86.20  E-value=0.77  Score=42.39  Aligned_cols=33  Identities=12%  Similarity=0.308  Sum_probs=30.0

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~  124 (356)
                      ..|.|||+|..|.+.|+.|+.. ++ ++.++|...
T Consensus         8 ~kI~viGaG~vG~~~a~~l~~~-~~~~v~L~Di~~   41 (324)
T 3gvi_A            8 NKIALIGSGMIGGTLAHLAGLK-ELGDVVLFDIAE   41 (324)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCCeEEEEeCCc
Confidence            4799999999999999999998 88 999999864

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=86.00  E-value=0.79  Score=39.37  Aligned_cols=33  Identities=18%  Similarity=0.267  Sum_probs=29.9

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      ..|.|||+|..|...|..|.+. |.+|.++++..
T Consensus        29 ~~I~iiG~G~~G~~la~~l~~~-g~~V~~~~r~~   61 (215)
T 2vns_A           29 PKVGILGSGDFARSLATRLVGS-GFKVVVGSRNP   61 (215)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT-TCCEEEEESSH
T ss_pred             CEEEEEccCHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            4699999999999999999999 99999998863

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=85.95  E-value=0.67  Score=44.92  Aligned_cols=34  Identities=18%  Similarity=0.359  Sum_probs=31.1

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS  125 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~  125 (356)
                      ..|.|||+|.-|...|..|++. |++|+++|+...
T Consensus        55 ~kVaVIGaG~MG~~IA~~la~a-G~~V~l~D~~~e   88 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFGLA-GIETFLVVRNEQ   88 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCeEEEEECcHH
Confidence            3699999999999999999999 999999998753

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=85.77  E-value=0.78  Score=41.68  Aligned_cols=33  Identities=18%  Similarity=0.412  Sum_probs=29.8

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCC-eEEEEecc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQS  123 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~  123 (356)
                      ...++|||+|.+|..+|..|.+. |. +|+|+.|.
T Consensus       141 ~~~vlVlGaGg~g~aia~~L~~~-G~~~V~v~nR~  174 (297)
T 2egg_A          141 GKRILVIGAGGGARGIYFSLLST-AAERIDMANRT  174 (297)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTT-TCSEEEEECSS
T ss_pred             CCEEEEECcHHHHHHHHHHHHHC-CCCEEEEEeCC
Confidence            35799999999999999999999 87 89999876

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=85.66  E-value=0.7  Score=42.39  Aligned_cols=33  Identities=36%  Similarity=0.621  Sum_probs=28.7

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCC--eEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~--~V~llEk~~  124 (356)
                      ..|.|||+|..|.+.|+.|+.. +.  ++.++|...
T Consensus         7 ~kI~IIGaG~vG~sla~~l~~~-~~~~ev~l~Di~~   41 (316)
T 1ldn_A            7 ARVVVIGAGFVGASYVFALMNQ-GIADEIVLIDANE   41 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-TCCSEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhC-CCCCEEEEEeCCc
Confidence            5799999999999999999886 54  899999753

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=85.60  E-value=0.6  Score=44.87  Aligned_cols=32  Identities=25%  Similarity=0.374  Sum_probs=29.5

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .|.|||.|..|+..|..|++. |.+|+++++..
T Consensus         2 kI~VIG~G~vG~~~A~~la~~-G~~V~~~d~~~   33 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSAR-GHEVIGVDVSS   33 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHHC-CCEEEEEECCH
Confidence            489999999999999999999 99999999863

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=85.59  E-value=0.49  Score=41.08  Aligned_cols=32  Identities=25%  Similarity=0.451  Sum_probs=29.4

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      -.++|+|+|..|...|..|.+. |. |+++|+..
T Consensus        10 ~~viI~G~G~~G~~la~~L~~~-g~-v~vid~~~   41 (234)
T 2aef_A           10 RHVVICGWSESTLECLRELRGS-EV-FVLAEDEN   41 (234)
T ss_dssp             CEEEEESCCHHHHHHHHHSTTS-EE-EEEESCGG
T ss_pred             CEEEEECCChHHHHHHHHHHhC-Ce-EEEEECCH
Confidence            4699999999999999999998 89 99999875

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=85.55  E-value=0.83  Score=41.74  Aligned_cols=33  Identities=21%  Similarity=0.414  Sum_probs=29.4

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~  124 (356)
                      ..|.|||+|..|...|+.|+.. |. +|.++|...
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~-g~~~v~L~Di~~   36 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAK-ELGDIVLLDIVE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCCeEEEEeCCc
Confidence            3699999999999999999998 76 899999764

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=85.54  E-value=0.81  Score=41.82  Aligned_cols=33  Identities=21%  Similarity=0.543  Sum_probs=28.9

Q ss_pred             cEEEECCCHHHHHHHHHhhcCC-CCeEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNP-NIQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~-G~~V~llEk~~  124 (356)
                      .|.|||+|..|...|..|++.+ +.+|+++|+..
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~   35 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            5899999999999999999841 78999999874

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=85.32  E-value=0.76  Score=44.80  Aligned_cols=34  Identities=26%  Similarity=0.433  Sum_probs=30.5

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .-.|+|+|+|..|..+|..|+.. |.+|++.|+.+
T Consensus       265 GKtVvVtGaGgIG~aiA~~Laa~-GA~Viv~D~~~  298 (488)
T 3ond_A          265 GKVAVVAGYGDVGKGCAAALKQA-GARVIVTEIDP  298 (488)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCCH
Confidence            35699999999999999999999 99999998763

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=85.28  E-value=0.94  Score=41.48  Aligned_cols=33  Identities=27%  Similarity=0.351  Sum_probs=30.2

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCC--eEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~--~V~llEk~~  124 (356)
                      ..|.|||.|..|.+.|..|.+. |.  +|+++++..
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~-G~~~~V~~~dr~~   68 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRS-GFKGKIYGYDINP   68 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHT-TCCSEEEEECSCH
T ss_pred             CEEEEEeeCHHHHHHHHHHHhC-CCCCEEEEEECCH
Confidence            4799999999999999999999 88  999999864

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=85.23  E-value=0.91  Score=39.79  Aligned_cols=34  Identities=21%  Similarity=0.325  Sum_probs=31.1

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      ...|.|||.|..|...|..|++. |++|++.++..
T Consensus        19 ~~kIgiIG~G~mG~alA~~L~~~-G~~V~~~~r~~   52 (245)
T 3dtt_A           19 GMKIAVLGTGTVGRTMAGALADL-GHEVTIGTRDP   52 (245)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCh
Confidence            35799999999999999999999 99999999874

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=85.19  E-value=0.61  Score=41.77  Aligned_cols=33  Identities=21%  Similarity=0.376  Sum_probs=30.1

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      ..++|+|+|.+|..+|..|++. |.+|+|+.|..
T Consensus       120 ~~vlvlGaGg~g~a~a~~L~~~-G~~v~v~~R~~  152 (272)
T 1p77_A          120 QHVLILGAGGATKGVLLPLLQA-QQNIVLANRTF  152 (272)
T ss_dssp             CEEEEECCSHHHHTTHHHHHHT-TCEEEEEESSH
T ss_pred             CEEEEECCcHHHHHHHHHHHHC-CCEEEEEECCH
Confidence            4699999999999999999999 89999998873

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=85.18  E-value=0.81  Score=41.22  Aligned_cols=31  Identities=39%  Similarity=0.699  Sum_probs=28.5

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEecc
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~  123 (356)
                      ..++|+|+|..|.++|..|++. | +|+++.+.
T Consensus       129 k~vlV~GaGgiG~aia~~L~~~-G-~V~v~~r~  159 (287)
T 1nvt_A          129 KNIVIYGAGGAARAVAFELAKD-N-NIIIANRT  159 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHTSS-S-EEEEECSS
T ss_pred             CEEEEECchHHHHHHHHHHHHC-C-CEEEEECC
Confidence            4699999999999999999999 9 99999876

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=85.14  E-value=0.85  Score=41.32  Aligned_cols=33  Identities=21%  Similarity=0.227  Sum_probs=30.6

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      ..|.|||.|..|...|..|++. |++|+++++..
T Consensus         8 ~~I~iIG~G~mG~~~a~~l~~~-G~~V~~~dr~~   40 (303)
T 3g0o_A            8 FHVGIVGLGSMGMGAARSCLRA-GLSTWGADLNP   40 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             CeEEEECCCHHHHHHHHHHHHC-CCeEEEEECCH
Confidence            4799999999999999999999 99999999864

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=85.11  E-value=0.97  Score=38.33  Aligned_cols=32  Identities=22%  Similarity=0.323  Sum_probs=29.1

Q ss_pred             cEEEEC-CCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           92 DVVVVG-AGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIG-gG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .|.||| +|..|...|..|++. |.+|.++++..
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~-g~~V~~~~r~~   34 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATL-GHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTT-TCEEEEEESSH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            489999 999999999999999 99999999863

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=85.08  E-value=0.87  Score=40.84  Aligned_cols=32  Identities=25%  Similarity=0.314  Sum_probs=30.1

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .|.|||.|..|...|..|++. |++|+++++..
T Consensus         3 ~i~iIG~G~mG~~~a~~l~~~-G~~V~~~dr~~   34 (287)
T 3pef_A            3 KFGFIGLGIMGSAMAKNLVKA-GCSVTIWNRSP   34 (287)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSG
T ss_pred             EEEEEeecHHHHHHHHHHHHC-CCeEEEEcCCH
Confidence            589999999999999999999 99999999875

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=84.98  E-value=0.99  Score=41.57  Aligned_cols=33  Identities=18%  Similarity=0.319  Sum_probs=29.7

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~  124 (356)
                      ..|.|||+|..|.+.|+.|+.. ++ ++.++|...
T Consensus         6 ~kI~iiGaG~vG~~~a~~l~~~-~~~~v~l~Di~~   39 (321)
T 3p7m_A            6 KKITLVGAGNIGGTLAHLALIK-QLGDVVLFDIAQ   39 (321)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCceEEEEeCCh
Confidence            4799999999999999999998 77 999999764

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=84.97  E-value=0.76  Score=40.68  Aligned_cols=34  Identities=21%  Similarity=0.480  Sum_probs=30.1

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~  124 (356)
                      ...|+|||+|..|..+|..|++. |. +++|+|...
T Consensus        28 ~~~VlvvG~GglG~~va~~La~~-Gvg~i~lvD~d~   62 (251)
T 1zud_1           28 DSQVLIIGLGGLGTPAALYLAGA-GVGTLVLADDDD   62 (251)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHT-TCSEEEEECCCB
T ss_pred             cCcEEEEccCHHHHHHHHHHHHc-CCCeEEEEeCCC
Confidence            46899999999999999999999 76 788998764

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=84.96  E-value=0.79  Score=42.15  Aligned_cols=34  Identities=9%  Similarity=0.188  Sum_probs=29.7

Q ss_pred             ccEEEECCCHHHHH-HHHHhhcCCCCeEEEEeccCC
Q 018414           91 TDVVVVGAGSAGLS-CAYELSKNPNIQIAIIEQSVS  125 (356)
Q Consensus        91 ~DVvIIGgG~aGl~-aA~~La~~~G~~V~llEk~~~  125 (356)
                      ..|.|||.|.+|++ +|..|.++ |++|.+.|+...
T Consensus         5 ~~i~~iGiGg~Gms~~A~~L~~~-G~~V~~~D~~~~   39 (326)
T 3eag_A            5 KHIHIIGIGGTFMGGLAAIAKEA-GFEVSGCDAKMY   39 (326)
T ss_dssp             CEEEEESCCSHHHHHHHHHHHHT-TCEEEEEESSCC
T ss_pred             cEEEEEEECHHHHHHHHHHHHhC-CCEEEEEcCCCC
Confidence            36999999999996 78888889 999999998753

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=84.83  E-value=0.8  Score=41.43  Aligned_cols=34  Identities=12%  Similarity=0.229  Sum_probs=31.4

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS  125 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~  125 (356)
                      ..|.|||.|..|...|..|++. |++|+++++...
T Consensus        16 ~~I~vIG~G~mG~~~A~~l~~~-G~~V~~~dr~~~   49 (296)
T 3qha_A           16 LKLGYIGLGNMGAPMATRMTEW-PGGVTVYDIRIE   49 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHTTS-TTCEEEECSSTT
T ss_pred             CeEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCHH
Confidence            4799999999999999999999 999999998754

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=84.58  E-value=0.68  Score=42.28  Aligned_cols=32  Identities=19%  Similarity=0.269  Sum_probs=30.0

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCC-eEEEEecc
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQS  123 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~  123 (356)
                      ..|.|||.|..|...|..|++. |+ +|+++++.
T Consensus        25 ~~I~iIG~G~mG~~~A~~L~~~-G~~~V~~~dr~   57 (312)
T 3qsg_A           25 MKLGFIGFGEAASAIASGLRQA-GAIDMAAYDAA   57 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-SCCEEEEECSS
T ss_pred             CEEEEECccHHHHHHHHHHHHC-CCCeEEEEcCC
Confidence            4799999999999999999999 99 99999985

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=84.49  E-value=0.7  Score=42.25  Aligned_cols=30  Identities=27%  Similarity=0.375  Sum_probs=28.4

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEec
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQ  122 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk  122 (356)
                      .|.|||+|..|...|..|++. |.+|+++++
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~-g~~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDN-GNEVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHH-CCEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCeEEEEEc
Confidence            489999999999999999999 999999998

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=84.40  E-value=0.97  Score=41.53  Aligned_cols=33  Identities=18%  Similarity=0.428  Sum_probs=29.7

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCC-eEEEEecc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQS  123 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~  123 (356)
                      ...++|+|+|.+|.++|+.|++. |. +|+|+.|.
T Consensus       154 gk~~lVlGaGG~g~aia~~L~~~-Ga~~V~i~nR~  187 (315)
T 3tnl_A          154 GKKMTICGAGGAATAICIQAALD-GVKEISIFNRK  187 (315)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHT-TCSEEEEEECS
T ss_pred             CCEEEEECCChHHHHHHHHHHHC-CCCEEEEEECC
Confidence            35799999999999999999999 88 89999886

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=84.39  E-value=0.73  Score=42.28  Aligned_cols=32  Identities=25%  Similarity=0.482  Sum_probs=29.0

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCC--eEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~--~V~llEk~~  124 (356)
                      .|.|||+|..|...|..|++. |.  +|+++|+..
T Consensus         2 kI~VIGaG~~G~~la~~l~~~-g~~~~V~l~D~~~   35 (319)
T 1a5z_A            2 KIGIVGLGRVGSSTAFALLMK-GFAREMVLIDVDK   35 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-TCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCCCeEEEEeCCh
Confidence            489999999999999999998 88  999999763

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=84.38  E-value=0.86  Score=42.10  Aligned_cols=32  Identities=31%  Similarity=0.604  Sum_probs=28.8

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCC--eEEEEecc
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQS  123 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~--~V~llEk~  123 (356)
                      ..|.|||+|..|.++|+.|+.. +.  ++.++|..
T Consensus         6 ~kI~ViGaG~vG~~~a~~l~~~-~~~~~l~l~D~~   39 (326)
T 3pqe_A            6 NKVALIGAGFVGSSYAFALINQ-GITDELVVIDVN   39 (326)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-TCCSEEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCCceEEEEecc
Confidence            4799999999999999999987 76  89999974

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=84.37  E-value=0.91  Score=41.33  Aligned_cols=33  Identities=21%  Similarity=0.431  Sum_probs=30.8

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      ..|.|||.|..|...|..|++. |++|+++++..
T Consensus        22 ~~I~iIG~G~mG~~~A~~l~~~-G~~V~~~dr~~   54 (310)
T 3doj_A           22 MEVGFLGLGIMGKAMSMNLLKN-GFKVTVWNRTL   54 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSG
T ss_pred             CEEEEECccHHHHHHHHHHHHC-CCeEEEEeCCH
Confidence            4699999999999999999999 99999999875

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=84.23  E-value=0.77  Score=43.01  Aligned_cols=33  Identities=9%  Similarity=0.175  Sum_probs=30.1

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCC-------CeEEEEeccCC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPN-------IQIAIIEQSVS  125 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G-------~~V~llEk~~~  125 (356)
                      .|.|||+|..|...|..|++. |       .+|+++++...
T Consensus        23 kI~iIGaG~mG~alA~~L~~~-G~~~~~~~~~V~~~~r~~~   62 (375)
T 1yj8_A           23 KISILGSGNWASAISKVVGTN-AKNNYLFENEVRMWIRDEF   62 (375)
T ss_dssp             CEEEECCSHHHHHHHHHHHHH-HHHCTTBCSCEEEECCSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHc-CCccCCCCCeEEEEECChh
Confidence            699999999999999999998 8       89999998753

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=84.20  E-value=0.85  Score=44.17  Aligned_cols=33  Identities=21%  Similarity=0.323  Sum_probs=30.4

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEecc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~  123 (356)
                      ...|+|||+|..|...+..|.+. |.+|+|+++.
T Consensus        12 ~~~vlVvGgG~va~~k~~~L~~~-ga~V~vi~~~   44 (457)
T 1pjq_A           12 DRDCLIVGGGDVAERKARLLLEA-GARLTVNALT   44 (457)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TBEEEEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-cCEEEEEcCC
Confidence            35799999999999999999999 9999999975

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=84.18  E-value=0.99  Score=40.76  Aligned_cols=33  Identities=30%  Similarity=0.526  Sum_probs=29.5

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCC-eEEEEecc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQS  123 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~  123 (356)
                      ...++|+|+|.+|.++++.|++. |. +|+|+.|.
T Consensus       127 ~k~vlVlGaGG~g~aia~~L~~~-G~~~v~i~~R~  160 (283)
T 3jyo_A          127 LDSVVQVGAGGVGNAVAYALVTH-GVQKLQVADLD  160 (283)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHHC-CCCEEEEEECC
Confidence            45799999999999999999999 88 69999876

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=84.11  E-value=0.85  Score=44.44  Aligned_cols=35  Identities=17%  Similarity=0.366  Sum_probs=31.5

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccCC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSVS  125 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~~  125 (356)
                      ..|.|||+|..|+..|..|++.+|+ +|+++|+...
T Consensus        19 mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           19 KKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            4699999999999999999987679 9999998864

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=84.02  E-value=1.3  Score=45.03  Aligned_cols=98  Identities=17%  Similarity=0.125  Sum_probs=66.6

Q ss_pred             ccEEEEC--CCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEec
Q 018414           91 TDVVVVG--AGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKH  168 (356)
Q Consensus        91 ~DVvIIG--gG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~  168 (356)
                      -+|+|||  +|..|+.+|..|++. |.+|+++++...+.....                                     
T Consensus       524 ~~VvViG~ggG~~g~e~A~~L~~~-g~~Vtlv~~~~~l~~~~~-------------------------------------  565 (690)
T 3k30_A          524 KKVVVYDDDHYYLGGVVAELLAQK-GYEVSIVTPGAQVSSWTN-------------------------------------  565 (690)
T ss_dssp             SEEEEEECSCSSHHHHHHHHHHHT-TCEEEEEESSSSTTGGGG-------------------------------------
T ss_pred             CEEEEEcCCCCccHHHHHHHHHhC-CCeeEEEecccccccccc-------------------------------------
Confidence            4699999  999999999999999 999999998764321000                                     


Q ss_pred             hHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414          169 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       169 ~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~  241 (356)
                      ...+...+.+.+. +.||+++++++|+++..  +.+. +....           .++..++.+|.||+|+|..
T Consensus       566 ~~~~~~~l~~~l~-~~GV~i~~~~~V~~i~~--~~~~-v~~~~-----------~~~~~~i~aD~VV~A~G~~  623 (690)
T 3k30_A          566 NTFEVNRIQRRLI-ENGVARVTDHAVVAVGA--GGVT-VRDTY-----------ASIERELECDAVVMVTARL  623 (690)
T ss_dssp             GGTCHHHHHHHHH-HTTCEEEESEEEEEEET--TEEE-EEETT-----------TCCEEEEECSEEEEESCEE
T ss_pred             cchhHHHHHHHHH-HCCCEEEcCcEEEEEEC--CeEE-EEEcc-----------CCeEEEEECCEEEECCCCC
Confidence            0001223344444 57999999999999863  3221 22110           1134689999999999943

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=83.77  E-value=2.4  Score=42.84  Aligned_cols=56  Identities=7%  Similarity=-0.013  Sum_probs=43.9

Q ss_pred             hHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeC--CeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCC
Q 018414          169 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG--GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG  239 (356)
Q Consensus       169 ~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~--~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtG  239 (356)
                      ...+.+.|.+.+. ..|++|++++.|.+|..++  +++.||...+              +.+++||.||....
T Consensus       377 ~g~L~qaL~r~~~-~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~--------------Ge~i~A~~VVs~~~  434 (650)
T 1vg0_A          377 QGELPQCFCRMCA-VFGGIYCLRHSVQCLVVDKESRKCKAVIDQF--------------GQRIISKHFIIEDS  434 (650)
T ss_dssp             TTHHHHHHHHHHH-HTTCEEESSCCEEEEEEETTTCCEEEEEETT--------------SCEEECSEEEEEGG
T ss_pred             hhHHHHHHHHHHH-HcCCEEEeCCEeeEEEEeCCCCeEEEEEeCC--------------CCEEEcCEEEEChh
Confidence            4566677766665 6799999999999999987  8898887532              46799999987444

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=83.70  E-value=0.91  Score=41.91  Aligned_cols=32  Identities=34%  Similarity=0.613  Sum_probs=28.7

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCC--eEEEEecc
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQS  123 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~--~V~llEk~  123 (356)
                      ..|.|||+|..|.++|+.|+.. +.  ++.++|..
T Consensus        10 ~kV~ViGaG~vG~~~a~~l~~~-~~~~el~l~D~~   43 (326)
T 3vku_A           10 QKVILVGDGAVGSSYAYAMVLQ-GIAQEIGIVDIF   43 (326)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-TCCSEEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCCCeEEEEeCC
Confidence            5799999999999999999987 66  89999974

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=83.54  E-value=1.3  Score=40.30  Aligned_cols=33  Identities=15%  Similarity=0.249  Sum_probs=30.3

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      ..|.|||+|..|...|..|++. |.+|+++++..
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~-g~~V~~~~~~~   63 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKM-GHTVTVWNRTA   63 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHT-TCCEEEECSSG
T ss_pred             CeEEEEcccHHHHHHHHHHHhC-CCEEEEEeCCH
Confidence            4699999999999999999999 99999999864

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=83.53  E-value=0.77  Score=42.75  Aligned_cols=32  Identities=28%  Similarity=0.385  Sum_probs=29.6

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .|.|||+|..|...|..|++. |++|.++++..
T Consensus        17 kI~iIG~G~mG~~la~~L~~~-G~~V~~~~r~~   48 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKK-CREVCVWHMNE   48 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTT-EEEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHhC-CCEEEEEECCH
Confidence            699999999999999999999 99999998763

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=83.44  E-value=0.78  Score=44.73  Aligned_cols=34  Identities=24%  Similarity=0.435  Sum_probs=29.5

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCC-CCeEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNP-NIQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~-G~~V~llEk~~  124 (356)
                      ..|.|||.|..|+..|..|++.. |++|+++++..
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~   44 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNT   44 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            47999999999999999999862 68999999753

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=83.37  E-value=1.4  Score=42.29  Aligned_cols=56  Identities=18%  Similarity=0.120  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHcC-------CCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCC
Q 018414          170 ALFTSTIMSKLLAR-------PNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGH  240 (356)
Q Consensus       170 ~~~~~~l~~~~~~~-------~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg  240 (356)
                      ..+.+.|.+.+.+.       .+++|+++++|++|..+++++. |.+.+              +.+++||+||+|++.
T Consensus       206 ~~l~~~l~~~l~~~~~~~~~i~~~~i~~~~~V~~i~~~~~~v~-v~~~~--------------g~~~~ad~vI~a~~~  268 (472)
T 1b37_A          206 EAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSPGGVT-VKTED--------------NSVYSADYVMVSASL  268 (472)
T ss_dssp             THHHHHHHHTTSCBCTTTCCBCCTTEESSCCEEEEEECSSCEE-EEETT--------------SCEEEESEEEECSCH
T ss_pred             HHHHHHHHHhccccccccccccccEEEcCCEEEEEEEcCCcEE-EEECC--------------CCEEEcCEEEEecCH
Confidence            35556666555322       2678999999999998877765 55532              357999999999994

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=83.29  E-value=1.1  Score=43.76  Aligned_cols=33  Identities=24%  Similarity=0.373  Sum_probs=30.5

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      ..|.|||+|..|...|..|++. |++|+++|+..
T Consensus         6 ~kVgVIGaG~MG~~IA~~la~a-G~~V~l~D~~~   38 (483)
T 3mog_A            6 QTVAVIGSGTMGAGIAEVAASH-GHQVLLYDISA   38 (483)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT-TCCEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHHC-CCeEEEEECCH
Confidence            3699999999999999999999 99999999874

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=83.13  E-value=0.96  Score=40.74  Aligned_cols=34  Identities=26%  Similarity=0.413  Sum_probs=30.4

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~  124 (356)
                      ...++|+|+|.+|.++|+.|.+. |. +|+|+.|..
T Consensus       117 ~k~vlvlGaGg~g~aia~~L~~~-G~~~v~v~~R~~  151 (277)
T 3don_A          117 DAYILILGAGGASKGIANELYKI-VRPTLTVANRTM  151 (277)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHTT-CCSCCEEECSCG
T ss_pred             CCEEEEECCcHHHHHHHHHHHHC-CCCEEEEEeCCH
Confidence            35799999999999999999999 88 899998874

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=82.97  E-value=1.3  Score=39.24  Aligned_cols=32  Identities=34%  Similarity=0.593  Sum_probs=29.4

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~  124 (356)
                      .++|||+|.+|.++++.|.+. |. +|.|+.|..
T Consensus       110 ~vliiGaGg~a~ai~~~L~~~-G~~~I~v~nR~~  142 (253)
T 3u62_A          110 PVVVVGAGGAARAVIYALLQM-GVKDIWVVNRTI  142 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT-TCCCEEEEESCH
T ss_pred             eEEEECcHHHHHHHHHHHHHc-CCCEEEEEeCCH
Confidence            799999999999999999998 87 899998863

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=82.92  E-value=1.2  Score=41.31  Aligned_cols=34  Identities=24%  Similarity=0.473  Sum_probs=30.0

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~  124 (356)
                      ...|+|||+|..|..+|..|++. |. +++|+|...
T Consensus        34 ~~~VlIvGaGGlGs~va~~La~a-GVg~ItlvD~D~   68 (340)
T 3rui_A           34 NTKVLLLGAGTLGCYVSRALIAW-GVRKITFVDNGT   68 (340)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TCCEEEEECCCB
T ss_pred             CCEEEEECCCHHHHHHHHHHHHc-CCCEEEEecCCE
Confidence            46899999999999999999998 75 688898764

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=82.86  E-value=1.3  Score=40.17  Aligned_cols=33  Identities=36%  Similarity=0.418  Sum_probs=30.6

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      ..|.|||.|..|...|..|.+. |++|+++++..
T Consensus        10 ~~IgiIG~G~mG~~~A~~l~~~-G~~V~~~dr~~   42 (306)
T 3l6d_A           10 FDVSVIGLGAMGTIMAQVLLKQ-GKRVAIWNRSP   42 (306)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSH
T ss_pred             CeEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            4799999999999999999999 99999999864

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=82.81  E-value=1.2  Score=43.42  Aligned_cols=34  Identities=21%  Similarity=0.342  Sum_probs=31.2

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      +.+|.|||.|..|...|..|+++ |.+|++.++..
T Consensus        15 ~~~IgvIGlG~MG~~lA~~La~~-G~~V~v~~r~~   48 (480)
T 2zyd_A           15 KQQIGVVGMAVMGRNLALNIESR-GYTVSIFNRSR   48 (480)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHTT-TCCEEEECSSH
T ss_pred             CCeEEEEccHHHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            46899999999999999999999 99999999863

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=82.70  E-value=1.3  Score=40.08  Aligned_cols=33  Identities=21%  Similarity=0.412  Sum_probs=30.3

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEecc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~  123 (356)
                      ...|.|||.|..|..+|..|... |.+|+++++.
T Consensus       155 g~~v~IiG~G~iG~~~a~~l~~~-G~~V~~~dr~  187 (293)
T 3d4o_A          155 GANVAVLGLGRVGMSVARKFAAL-GAKVKVGARE  187 (293)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESS
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhC-CCEEEEEECC
Confidence            45799999999999999999988 9999999976

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=82.69  E-value=0.99  Score=40.99  Aligned_cols=34  Identities=24%  Similarity=0.389  Sum_probs=30.1

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~  124 (356)
                      ...|+|||+|..|..+|..|++. |. +++|+|...
T Consensus        36 ~~~VlVvGaGGlGs~va~~La~a-GVG~i~lvD~D~   70 (292)
T 3h8v_A           36 TFAVAIVGVGGVGSVTAEMLTRC-GIGKLLLFDYDK   70 (292)
T ss_dssp             GCEEEEECCSHHHHHHHHHHHHH-TCSEEEEECCCB
T ss_pred             CCeEEEECcCHHHHHHHHHHHHc-CCCEEEEECCCc
Confidence            46899999999999999999998 74 789999764

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=82.63  E-value=0.94  Score=41.25  Aligned_cols=32  Identities=19%  Similarity=0.328  Sum_probs=29.0

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCC--CeEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPN--IQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G--~~V~llEk~~  124 (356)
                      .|.|||+|..|...|..|++. |  .+|+++|+..
T Consensus         3 kI~VIGaG~~G~~la~~L~~~-g~~~~V~l~d~~~   36 (309)
T 1hyh_A            3 KIGIIGLGNVGAAVAHGLIAQ-GVADDYVFIDANE   36 (309)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-TCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCCCEEEEEcCCH
Confidence            599999999999999999998 8  6899999863

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=82.60  E-value=1.2  Score=39.89  Aligned_cols=32  Identities=19%  Similarity=0.377  Sum_probs=29.3

Q ss_pred             ccEEEEC-CCHHHHHHHHHhhcCCCCeEEEEecc
Q 018414           91 TDVVVVG-AGSAGLSCAYELSKNPNIQIAIIEQS  123 (356)
Q Consensus        91 ~DVvIIG-gG~aGl~aA~~La~~~G~~V~llEk~  123 (356)
                      ..++|+| +|.+|..+|..|++. |.+|+++.|.
T Consensus       120 k~vlVtGaaGGiG~aia~~L~~~-G~~V~i~~R~  152 (287)
T 1lu9_A          120 KKAVVLAGTGPVGMRSAALLAGE-GAEVVLCGRK  152 (287)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHC-cCEEEEEECC
Confidence            4699999 899999999999999 9999999876

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=82.59  E-value=0.93  Score=43.71  Aligned_cols=33  Identities=15%  Similarity=0.203  Sum_probs=30.5

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      ..+.|||.|-.||.+|..+++. |++|+.+|-+.
T Consensus        22 ~~IaViGlGYVGLp~A~~~A~~-G~~V~g~Did~   54 (444)
T 3vtf_A           22 ASLSVLGLGYVGVVHAVGFALL-GHRVVGYDVNP   54 (444)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-TCEEEEECSCH
T ss_pred             CEEEEEccCHHHHHHHHHHHhC-CCcEEEEECCH
Confidence            5799999999999999999999 99999999764

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=82.58  E-value=1.1  Score=38.18  Aligned_cols=32  Identities=19%  Similarity=0.360  Sum_probs=29.5

Q ss_pred             cEEEECC-CHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           92 DVVVVGA-GSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGg-G~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .|+|.|| |..|...+..|.++ |.+|.++.|..
T Consensus         6 ~ilItGatG~iG~~l~~~L~~~-g~~V~~~~r~~   38 (227)
T 3dhn_A            6 KIVLIGASGFVGSALLNEALNR-GFEVTAVVRHP   38 (227)
T ss_dssp             EEEEETCCHHHHHHHHHHHHTT-TCEEEEECSCG
T ss_pred             EEEEEcCCchHHHHHHHHHHHC-CCEEEEEEcCc
Confidence            5999996 99999999999999 99999999875

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=82.56  E-value=0.98  Score=42.70  Aligned_cols=29  Identities=14%  Similarity=0.358  Sum_probs=27.3

Q ss_pred             cEEEECCCHHHHHHHHHhhc-CCCCeEEEEe
Q 018414           92 DVVVVGAGSAGLSCAYELSK-NPNIQIAIIE  121 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~-~~G~~V~llE  121 (356)
                      .|.|||+|..|...|..|++ . |.+|++++
T Consensus         4 kI~ViGaG~~G~~~a~~La~~~-G~~V~~~~   33 (404)
T 3c7a_A            4 KVCVCGGGNGAHTLSGLAASRD-GVEVRVLT   33 (404)
T ss_dssp             EEEEECCSHHHHHHHHHHTTST-TEEEEEEC
T ss_pred             eEEEECCCHHHHHHHHHHHhCC-CCEEEEEe
Confidence            69999999999999999987 6 89999999

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=82.51  E-value=1.3  Score=40.14  Aligned_cols=33  Identities=21%  Similarity=0.394  Sum_probs=30.2

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEecc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~  123 (356)
                      ...|.|||.|..|..+|..|... |.+|+++++.
T Consensus       157 g~~v~IiG~G~iG~~~a~~l~~~-G~~V~~~d~~  189 (300)
T 2rir_A          157 GSQVAVLGLGRTGMTIARTFAAL-GANVKVGARS  189 (300)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHT-TCEEEEEESS
T ss_pred             CCEEEEEcccHHHHHHHHHHHHC-CCEEEEEECC
Confidence            45799999999999999999988 9999999976

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=82.48  E-value=0.99  Score=41.02  Aligned_cols=32  Identities=28%  Similarity=0.385  Sum_probs=28.7

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCC--eEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~--~V~llEk~~  124 (356)
                      .|.|||+|..|.+.|+.|++. +.  ++.++|...
T Consensus         2 kI~ViGaG~vG~~la~~l~~~-~~~~~v~L~D~~~   35 (294)
T 1oju_A            2 KLGFVGAGRVGSTSAFTCLLN-LDVDEIALVDIAE   35 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-SCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCCCeEEEEECCh
Confidence            489999999999999999998 77  899999764

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=82.46  E-value=2.1  Score=40.07  Aligned_cols=34  Identities=18%  Similarity=0.354  Sum_probs=30.7

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS  125 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~  125 (356)
                      ..|+|||+|..|...+..+.+. |++|++++....
T Consensus        13 ~~IlIlG~G~lg~~la~aa~~l-G~~viv~d~~~~   46 (377)
T 3orq_A           13 ATIGIIGGGQLGKMMAQSAQKM-GYKVVVLDPSED   46 (377)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCEEEEEECCCC
Confidence            4699999999999999999999 999999997643

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=82.41  E-value=1.4  Score=39.69  Aligned_cols=33  Identities=18%  Similarity=0.367  Sum_probs=29.5

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCC-eEEEEecc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQS  123 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~  123 (356)
                      ...++|+|+|.+|..++..|++. |. +|.|+.|.
T Consensus       126 ~k~vlvlGaGg~g~aia~~L~~~-G~~~v~v~~R~  159 (281)
T 3o8q_A          126 GATILLIGAGGAARGVLKPLLDQ-QPASITVTNRT  159 (281)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTT-CCSEEEEEESS
T ss_pred             CCEEEEECchHHHHHHHHHHHhc-CCCeEEEEECC
Confidence            35799999999999999999999 85 89999886

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=82.37  E-value=1.3  Score=39.37  Aligned_cols=32  Identities=25%  Similarity=0.290  Sum_probs=29.1

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .|.|||+|..|...|..|.+. |.+|.++++..
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~-g~~V~~~~~~~   33 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRR-GHYLIGVSRQQ   33 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             EEEEEcCcHHHHHHHHHHHHC-CCEEEEEECCH
Confidence            489999999999999999999 99999998763

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=82.34  E-value=1.4  Score=37.83  Aligned_cols=33  Identities=24%  Similarity=0.261  Sum_probs=30.3

Q ss_pred             ccEEEECC-CHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           91 TDVVVVGA-GSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGg-G~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      ..|+|.|| |..|..++..|.++ |.+|+++.|..
T Consensus        22 ~~ilVtGatG~iG~~l~~~L~~~-G~~V~~~~R~~   55 (236)
T 3e8x_A           22 MRVLVVGANGKVARYLLSELKNK-GHEPVAMVRNE   55 (236)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSG
T ss_pred             CeEEEECCCChHHHHHHHHHHhC-CCeEEEEECCh
Confidence            46999998 99999999999999 99999999874

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=82.21  E-value=0.93  Score=39.90  Aligned_cols=33  Identities=21%  Similarity=0.221  Sum_probs=29.0

Q ss_pred             ccEEEECC-C-HHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           91 TDVVVVGA-G-SAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGg-G-~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .-++|.|| | ..|..+|.+|+++ |.+|+++++..
T Consensus        23 k~vlITGasg~GIG~~~a~~l~~~-G~~V~~~~r~~   57 (266)
T 3o38_A           23 KVVLVTAAAGTGIGSTTARRALLE-GADVVISDYHE   57 (266)
T ss_dssp             CEEEESSCSSSSHHHHHHHHHHHT-TCEEEEEESCH
T ss_pred             CEEEEECCCCCchHHHHHHHHHHC-CCEEEEecCCH
Confidence            35899999 7 5999999999999 99999998763

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=82.19  E-value=1.3  Score=40.50  Aligned_cols=33  Identities=21%  Similarity=0.416  Sum_probs=29.6

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCC-eEEEEecc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQS  123 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~  123 (356)
                      ...++|+|+|.+|.++++.|++. |. +|+|+.|.
T Consensus       148 gk~~lVlGAGGaaraia~~L~~~-G~~~v~v~nRt  181 (312)
T 3t4e_A          148 GKTMVLLGAGGAATAIGAQAAIE-GIKEIKLFNRK  181 (312)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEECS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHc-CCCEEEEEECC
Confidence            35799999999999999999999 87 79999886

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=82.19  E-value=1.3  Score=39.63  Aligned_cols=33  Identities=18%  Similarity=0.327  Sum_probs=29.4

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCC-eEEEEecc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQS  123 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~  123 (356)
                      ...++|+|+|.+|.++++.|++. |. +|+|+.|.
T Consensus       120 ~k~~lvlGaGg~~~aia~~L~~~-G~~~v~i~~R~  153 (272)
T 3pwz_A          120 NRRVLLLGAGGAVRGALLPFLQA-GPSELVIANRD  153 (272)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHT-CCSEEEEECSC
T ss_pred             CCEEEEECccHHHHHHHHHHHHc-CCCEEEEEeCC
Confidence            35799999999999999999999 85 89999876

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=82.09  E-value=1.5  Score=36.90  Aligned_cols=32  Identities=22%  Similarity=0.362  Sum_probs=29.2

Q ss_pred             cEEEECC-CHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           92 DVVVVGA-GSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGg-G~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .|+|.|| |..|..++..|.++ |.+|+++.|..
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~-g~~V~~~~R~~   34 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNR-GHEVTAIVRNA   34 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCS
T ss_pred             eEEEEcCCchhHHHHHHHHHhC-CCEEEEEEcCc
Confidence            3899996 99999999999999 99999999874

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=82.07  E-value=1.2  Score=41.10  Aligned_cols=33  Identities=33%  Similarity=0.599  Sum_probs=28.7

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCC--eEEEEecc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQS  123 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~--~V~llEk~  123 (356)
                      +..|.|||+|..|.++|+.|+.. +.  .+.|+|..
T Consensus         9 ~~KI~IiGaG~vG~~la~~l~~~-~~~~el~L~Di~   43 (326)
T 2zqz_A            9 HQKVILVGDGAVGSSYAYAMVLQ-GIAQEIGIVDIF   43 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHH-TCCSEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHcC-CCCCEEEEEeCC
Confidence            46899999999999999999886 55  79999974

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=81.89  E-value=1.4  Score=39.92  Aligned_cols=32  Identities=28%  Similarity=0.395  Sum_probs=29.7

Q ss_pred             cEEEEC-CCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           92 DVVVVG-AGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIG-gG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .|.||| .|..|.+.|..|++. |.+|.++++..
T Consensus        23 ~I~iIGg~G~mG~~la~~l~~~-G~~V~~~~~~~   55 (298)
T 2pv7_A           23 KIVIVGGYGKLGGLFARYLRAS-GYPISILDRED   55 (298)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTT-TCCEEEECTTC
T ss_pred             EEEEEcCCCHHHHHHHHHHHhC-CCeEEEEECCc
Confidence            699999 999999999999999 99999999764

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=81.80  E-value=1.6  Score=38.72  Aligned_cols=32  Identities=22%  Similarity=0.457  Sum_probs=30.0

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .|+|.|+|..|...+..|.++ |.+|+++.+..
T Consensus         5 ~ilVtGaG~iG~~l~~~L~~~-g~~V~~~~r~~   36 (286)
T 3gpi_A            5 KILIAGCGDLGLELARRLTAQ-GHEVTGLRRSA   36 (286)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT-TCCEEEEECTT
T ss_pred             cEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCc
Confidence            699999999999999999999 99999999874

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=81.76  E-value=1.3  Score=43.80  Aligned_cols=34  Identities=21%  Similarity=0.407  Sum_probs=31.8

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS  125 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~  125 (356)
                      -.++|+|+|..|...|..|.+. |.+|+++|+++.
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~-g~~v~vid~d~~  382 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRK-PVPFILIDRQES  382 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT-TCCEEEEESSCC
T ss_pred             CCEEEECCCHHHHHHHHHHHHC-CCCEEEEECChH
Confidence            5799999999999999999999 999999999864

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=81.73  E-value=1.2  Score=40.23  Aligned_cols=34  Identities=24%  Similarity=0.318  Sum_probs=30.1

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~  124 (356)
                      ...++|+|+|.+|.++++.|.+. |. +|+|+.|..
T Consensus       122 ~k~vlvlGaGGaaraia~~L~~~-G~~~v~v~nRt~  156 (282)
T 3fbt_A          122 NNICVVLGSGGAARAVLQYLKDN-FAKDIYVVTRNP  156 (282)
T ss_dssp             TSEEEEECSSTTHHHHHHHHHHT-TCSEEEEEESCH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHc-CCCEEEEEeCCH
Confidence            45799999999999999999999 87 899998763

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=81.69  E-value=1.3  Score=39.80  Aligned_cols=33  Identities=18%  Similarity=0.221  Sum_probs=28.8

Q ss_pred             ccEEEECCC---HHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           91 TDVVVVGAG---SAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG---~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .-++|.||+   ..|..+|..|+++ |.+|+++.+..
T Consensus        31 k~vlVTGasg~~GIG~~ia~~la~~-G~~V~~~~r~~   66 (296)
T 3k31_A           31 KKGVIIGVANDKSLAWGIAKAVCAQ-GAEVALTYLSE   66 (296)
T ss_dssp             CEEEEECCCSTTSHHHHHHHHHHHT-TCEEEEEESSG
T ss_pred             CEEEEEeCCCCCCHHHHHHHHHHHC-CCEEEEEeCCh
Confidence            458999985   7899999999999 99999998863

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=81.68  E-value=0.89  Score=40.77  Aligned_cols=32  Identities=16%  Similarity=0.252  Sum_probs=30.0

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .|.|||.|..|...|..|++. |++|+++++..
T Consensus         3 ~I~iiG~G~mG~~~a~~l~~~-G~~V~~~dr~~   34 (287)
T 3pdu_A            3 TYGFLGLGIMGGPMAANLVRA-GFDVTVWNRNP   34 (287)
T ss_dssp             CEEEECCSTTHHHHHHHHHHH-TCCEEEECSSG
T ss_pred             eEEEEccCHHHHHHHHHHHHC-CCeEEEEcCCH
Confidence            589999999999999999999 99999999875

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=81.64  E-value=1.4  Score=41.17  Aligned_cols=33  Identities=18%  Similarity=0.342  Sum_probs=30.7

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      ..|.|||.|..|...|..|++. |++|+++++..
T Consensus        23 mkIgiIGlG~mG~~~A~~L~~~-G~~V~v~dr~~   55 (358)
T 4e21_A           23 MQIGMIGLGRMGADMVRRLRKG-GHECVVYDLNV   55 (358)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             CEEEEECchHHHHHHHHHHHhC-CCEEEEEeCCH
Confidence            4799999999999999999999 99999999864

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=81.49  E-value=1.1  Score=40.82  Aligned_cols=33  Identities=27%  Similarity=0.681  Sum_probs=29.2

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCC--eEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~--~V~llEk~~  124 (356)
                      ..|.|||+|..|...|+.++.. +.  ++.|+|...
T Consensus        15 ~kV~ViGaG~vG~~~a~~l~~~-g~~~ev~L~Di~~   49 (303)
T 2i6t_A           15 NKITVVGGGELGIACTLAISAK-GIADRLVLLDLSE   49 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-TCCSEEEEECCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHhc-CCCCEEEEEcCCc
Confidence            4799999999999999999988 78  999999875

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=81.37  E-value=1.5  Score=42.99  Aligned_cols=34  Identities=9%  Similarity=0.234  Sum_probs=31.4

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      ...|.|||.|..|...|..|+++ |++|++.++..
T Consensus        10 ~~~IgvIGlG~MG~~lA~~La~~-G~~V~v~dr~~   43 (497)
T 2p4q_A           10 SADFGLIGLAVMGQNLILNAADH-GFTVCAYNRTQ   43 (497)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSS
T ss_pred             CCCEEEEeeHHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            46899999999999999999999 99999999864

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=81.30  E-value=1.7  Score=41.52  Aligned_cols=34  Identities=15%  Similarity=0.298  Sum_probs=30.3

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      ...|+|+|+|..|...+..+.+. |++|++++...
T Consensus        35 ~~~IlIlG~G~lg~~~~~aa~~l-G~~v~v~d~~~   68 (419)
T 4e4t_A           35 GAWLGMVGGGQLGRMFCFAAQSM-GYRVAVLDPDP   68 (419)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCEEEEECCCC
Confidence            35799999999999999999999 99999998653

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=81.17  E-value=1.6  Score=36.90  Aligned_cols=32  Identities=22%  Similarity=0.384  Sum_probs=29.3

Q ss_pred             cEEEECC-CHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           92 DVVVVGA-GSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGg-G~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .|+|.|| |..|...+..|.++ |.+|+++.|..
T Consensus         2 kilVtGatG~iG~~l~~~L~~~-g~~V~~~~R~~   34 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRR-GHEVLAVVRDP   34 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCH
T ss_pred             EEEEEcCCCHHHHHHHHHHHHC-CCEEEEEEecc
Confidence            3899998 99999999999999 99999999864

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=81.11  E-value=1.2  Score=39.84  Aligned_cols=33  Identities=24%  Similarity=0.482  Sum_probs=29.8

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      ..++|||+|..|...|..|.+. |.+|+++++..
T Consensus       130 ~~v~iiGaG~~g~aia~~L~~~-g~~V~v~~r~~  162 (275)
T 2hk9_A          130 KSILVLGAGGASRAVIYALVKE-GAKVFLWNRTK  162 (275)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHH-TCEEEEECSSH
T ss_pred             CEEEEECchHHHHHHHHHHHHc-CCEEEEEECCH
Confidence            5799999999999999999998 88999998763

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=81.08  E-value=1.5  Score=39.02  Aligned_cols=32  Identities=28%  Similarity=0.362  Sum_probs=28.9

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCC--eEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~--~V~llEk~~  124 (356)
                      .|.|||+|..|...|..|++. |.  +|+++++..
T Consensus         3 ~I~iIG~G~mG~~~a~~l~~~-g~~~~V~~~d~~~   36 (281)
T 2g5c_A            3 NVLIVGVGFMGGSFAKSLRRS-GFKGKIYGYDINP   36 (281)
T ss_dssp             EEEEESCSHHHHHHHHHHHHT-TCCSEEEEECSCH
T ss_pred             EEEEEecCHHHHHHHHHHHhc-CCCcEEEEEeCCH
Confidence            589999999999999999998 88  899998763

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=81.06  E-value=1.9  Score=35.79  Aligned_cols=32  Identities=16%  Similarity=0.442  Sum_probs=29.6

Q ss_pred             cEEEECC-CHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           92 DVVVVGA-GSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGg-G~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .|+|.|| |..|..++..|.++ |.+|+++.+..
T Consensus         5 ~ilVtGatG~iG~~l~~~l~~~-g~~V~~~~r~~   37 (206)
T 1hdo_A            5 KIAIFGATGQTGLTTLAQAVQA-GYEVTVLVRDS   37 (206)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCG
T ss_pred             EEEEEcCCcHHHHHHHHHHHHC-CCeEEEEEeCh
Confidence            5999999 99999999999999 99999999874

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=81.03  E-value=0.83  Score=42.20  Aligned_cols=34  Identities=21%  Similarity=0.261  Sum_probs=30.5

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCC-------CeEEEEeccCC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPN-------IQIAIIEQSVS  125 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G-------~~V~llEk~~~  125 (356)
                      ..|.|||+|..|...|..|++. |       .+|.++++...
T Consensus         9 mkI~iIG~G~mG~~~a~~l~~~-g~~~~~~~~~V~~~~r~~~   49 (354)
T 1x0v_A            9 KKVCIVGSGNWGSAIAKIVGGN-AAQLAQFDPRVTMWVFEED   49 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHH-HHHCTTEEEEEEEECCCCB
T ss_pred             CeEEEECCCHHHHHHHHHHHhc-CCcccCCCCeEEEEEcChh
Confidence            3699999999999999999998 8       89999998753

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=80.86  E-value=1.3  Score=38.84  Aligned_cols=34  Identities=18%  Similarity=0.198  Sum_probs=30.2

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCC----CeEEEEeccCC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPN----IQIAIIEQSVS  125 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G----~~V~llEk~~~  125 (356)
                      ..|.|||+|..|...|..|++. |    .+|.++++...
T Consensus         5 m~i~iiG~G~mG~~~a~~l~~~-g~~~~~~v~~~~~~~~   42 (262)
T 2rcy_A            5 IKLGFMGLGQMGSALAHGIANA-NIIKKENLFYYGPSKK   42 (262)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHH-TSSCGGGEEEECSSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHC-CCCCCCeEEEEeCCcc
Confidence            3699999999999999999988 8    69999998754

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=80.76  E-value=1.6  Score=38.49  Aligned_cols=33  Identities=12%  Similarity=0.123  Sum_probs=30.3

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      ..|+|.|+|..|...+..|.++ |++|+++.|..
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~-g~~V~~~~r~~   38 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQ-GWRIIGTSRNP   38 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGG-TCEEEEEESCG
T ss_pred             CcEEEECCcHHHHHHHHHHHHC-CCEEEEEEcCh
Confidence            3699999999999999999999 99999999864

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=80.65  E-value=1.4  Score=41.97  Aligned_cols=52  Identities=8%  Similarity=0.017  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCe-EEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGR-VGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~-v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~  241 (356)
                      ..+.+.|.+.    .|++++++++|++|..++++ +. |.++               ..+++||.||+|++..
T Consensus       215 ~~l~~~l~~~----lg~~i~~~~~V~~i~~~~~~~v~-v~~~---------------~~~~~ad~VI~a~p~~  267 (453)
T 2yg5_A          215 QQVSIRMAEA----LGDDVFLNAPVRTVKWNESGATV-LADG---------------DIRVEASRVILAVPPN  267 (453)
T ss_dssp             HHHHHHHHHH----HGGGEECSCCEEEEEEETTEEEE-EETT---------------TEEEEEEEEEECSCGG
T ss_pred             HHHHHHHHHh----cCCcEEcCCceEEEEEeCCceEE-EEEC---------------CeEEEcCEEEEcCCHH
Confidence            3444555443    36899999999999988876 43 3321               3679999999999943

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=80.64  E-value=1.3  Score=38.92  Aligned_cols=32  Identities=25%  Similarity=0.359  Sum_probs=29.0

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCC-CeEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPN-IQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G-~~V~llEk~~  124 (356)
                      .|.|||+|..|...|..|++. | .+|.++++..
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~-g~~~v~~~~r~~   34 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQ-GGYRIYIANRGA   34 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-CSCEEEEECSSH
T ss_pred             EEEEECchHHHHHHHHHHHHC-CCCeEEEECCCH
Confidence            489999999999999999998 8 9999998863

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=80.55  E-value=1.5  Score=42.89  Aligned_cols=34  Identities=21%  Similarity=0.466  Sum_probs=30.5

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .-.|+|||.|..|..+|..|... |.+|+++|+..
T Consensus       274 GktV~IiG~G~IG~~~A~~lka~-Ga~Viv~d~~~  307 (494)
T 3ce6_A          274 GKKVLICGYGDVGKGCAEAMKGQ-GARVSVTEIDP  307 (494)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             cCEEEEEccCHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            35799999999999999999888 99999999763

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=80.40  E-value=1.4  Score=42.19  Aligned_cols=34  Identities=26%  Similarity=0.387  Sum_probs=30.6

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .-.|+|||.|..|..+|..|... |.+|++.|+.+
T Consensus       220 GktV~ViG~G~IGk~vA~~Lra~-Ga~Viv~D~dp  253 (435)
T 3gvp_A          220 GKQVVVCGYGEVGKGCCAALKAM-GSIVYVTEIDP  253 (435)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHC-CCEEEEEeCCh
Confidence            45799999999999999999888 99999999763

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=80.39  E-value=1.5  Score=38.33  Aligned_cols=33  Identities=21%  Similarity=0.171  Sum_probs=27.4

Q ss_pred             ccEEEECC-CHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           91 TDVVVVGA-GSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGg-G~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .-++|.|| |..|..+|..|+++ |.+|+++++..
T Consensus        10 k~~lVTGas~gIG~a~a~~l~~~-G~~V~~~~r~~   43 (248)
T 3op4_A           10 KVALVTGASRGIGKAIAELLAER-GAKVIGTATSE   43 (248)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHT-TCEEEEEESSH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            34777776 56799999999999 99999998763

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=80.26  E-value=1.4  Score=40.50  Aligned_cols=32  Identities=22%  Similarity=0.529  Sum_probs=28.6

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCC--eEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~--~V~llEk~~  124 (356)
                      .|.|||+|..|..+|+.|++. +.  ++.++|...
T Consensus         2 kv~ViGaG~vG~~~a~~l~~~-~~~~el~l~D~~~   35 (314)
T 3nep_X            2 KVTVIGAGNVGATVAECVARQ-DVAKEVVMVDIKD   35 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-TCSSEEEEECSST
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCCCEEEEEeCch
Confidence            489999999999999999987 66  899999764

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=80.15  E-value=1.4  Score=39.51  Aligned_cols=33  Identities=18%  Similarity=0.292  Sum_probs=30.0

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      ..|.|||+|..|...|..|.+. |.+|.++++..
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~-g~~V~~~~~~~   38 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKA-GYSLVVSDRNP   38 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             ceEEEECchHHHHHHHHHHHhC-CCEEEEEeCCH
Confidence            3699999999999999999999 99999999864

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=80.03  E-value=1.5  Score=45.11  Aligned_cols=32  Identities=25%  Similarity=0.349  Sum_probs=30.1

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .|.|||+|..|...|..|++. |++|+++|+..
T Consensus       314 kV~VIGaG~MG~~iA~~la~a-G~~V~l~D~~~  345 (725)
T 2wtb_A          314 KVAIIGGGLMGSGIATALILS-NYPVILKEVNE  345 (725)
T ss_dssp             CEEEECCSHHHHHHHHHHHTT-TCCEEEECSSH
T ss_pred             EEEEEcCCHhhHHHHHHHHhC-CCEEEEEECCH
Confidence            599999999999999999999 99999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	356
d1rp0a1	278	c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi	3e-99
d2gjca1	311	c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th	2e-62
d2gmha1	380	c.3.1.2 (A:4-236,A:336-482) Electron transfer flav	2e-17
d2i0za1	251	c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B	3e-12
d1i8ta1	298	c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu	2e-08
d2v5za1	383	c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H	3e-08
d2dw4a2	449	c.3.1.2 (A:274-654,A:764-831) Lysine-specific hist	3e-08
d1seza1	373	c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox	5e-08
d1b5qa1	347	c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai	6e-08
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	1e-07
d2bi7a1	314	c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mu	2e-07
d1pj5a2	305	c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine ox	2e-07
d2gqfa1	253	c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H	4e-07
d2gf3a1	281	c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bac	4e-07
d1jnra2	356	c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reduct	4e-07
d2iida1	370	c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M	6e-07
d1ryia1	276	c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {	6e-07
d1qo8a2	317	c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (	7e-07
d1d4ca2	322	c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (	8e-07
d1y0pa2	308	c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (	9e-07
d1w4xa1	298	c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxy	1e-06
d1k0ia1	292	c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr	1e-06
d2ivda1	347	c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox	1e-06
d1kf6a2	311	c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Es	1e-06
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	1e-06
d1cf3a1	385	c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Asper	2e-06
d1gpea1	391	c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penic	3e-06
d1pn0a1	360	c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {So	4e-06
d1c0pa1	268	c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxida	5e-06
d2voua1	265	c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr	5e-06
d3c96a1	288	c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps	7e-06
d2gv8a1	335	c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monox	9e-06
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	2e-05
d1cjca2	230	c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase	2e-05
d1kifa1	246	c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N	2e-05
d1chua2	305	c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {E	5e-05
d3lada1	229	c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd	5e-05
d1v59a1	233	c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd	6e-05
d2bs2a2	336	c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wo	7e-05
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	9e-05
d1ju2a1	351	c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {	1e-04
d1lqta2	239	c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reduct	1e-04
d1neka2	330	c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase	2e-04
d3coxa1	370	c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of	2e-04
d1h6va1	235	c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin	2e-04
d1n4wa1	367	c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of	2e-04
d1ebda1	223	c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd	3e-04
d1nhpa1	198	c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enter	3e-04
d2f5va1	379	c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {W	4e-04
d1xdia1	233	c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehyd	4e-04
d1gesa1	217	c.3.1.5 (A:3-146,A:263-335) Glutathione reductase	5e-04
d1kdga1	360	c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain	5e-04
d3grsa1	221	c.3.1.5 (A:18-165,A:291-363) Glutathione reductase	6e-04
d1onfa1	259	c.3.1.5 (A:1-153,A:271-376) Glutathione reductase	7e-04
d1lvla1	220	c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehyd	8e-04
d1feca1	240	c.3.1.5 (A:1-169,A:287-357) Trypanothione reductas	0.001
d1aoga1	238	c.3.1.5 (A:3-169,A:287-357) Trypanothione reductas	0.001
d1gtea4	196	c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de	0.004
d1fcda1	186	c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf	0.004

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

 Score =  292 bits (749), Expect = 3e-99
 Identities = 250/277 (90%), Positives = 265/277 (95%)

Query: 58  YDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQI 117
           YDLN F FDPIKESIVSREMTRRYMTDMITYA+TDVVVVGAGSAGLS AYE+SKNPN+Q+
Sbjct: 1   YDLNAFTFDPIKESIVSREMTRRYMTDMITYAETDVVVVGAGSAGLSAAYEISKNPNVQV 60

Query: 118 AIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIM 177
           AIIEQSVSPGGGAWLGGQLFSAM+VRKPAH+FLDE+G+ YDEQD YVV+KHAALFTSTIM
Sbjct: 61  AIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAALFTSTIM 120

Query: 178 SKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSS 237
           SKLLARPNVKLFNAVAAEDLIVKG RVGGVVTNWALV+ NH TQSCMDPNVMEAK+VVSS
Sbjct: 121 SKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSS 180

Query: 238 CGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEI 297
           CGHDGPFGATGVKRLKSIGMI+ VPGMKALDMN+AEDAIVRLTREVVPGMIVTGMEVAEI
Sbjct: 181 CGHDGPFGATGVKRLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEI 240

Query: 298 DGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGT 334
           DGAPRMGPTFGAMMISGQKA  LALK+LG PNA+DGT
Sbjct: 241 DGAPRMGPTFGAMMISGQKAGQLALKALGLPNAIDGT 277

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  200 bits (508), Expect = 2e-62
 Identities = 154/291 (52%), Positives = 194/291 (66%), Gaps = 24/291 (8%)

Query: 59  DLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSK-NPNIQI 117
           D + FKF PI+ES VSR MT RY  D+  +A +DV++VGAGS+GLS AY ++K  P++++
Sbjct: 19  DWSDFKFAPIRESTVSRAMTSRYFKDLDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKV 78

Query: 118 AIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIM 177
            IIE SV+PGGG+WLGGQLFSAMV+RKPAH+FL EL I Y+++ +YVV+KHAALF ST++
Sbjct: 79  CIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDYVVVKHAALFISTVL 138

Query: 178 SKLLARPNVKLFNAVAAEDLI------VKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEA 231
           SK+L  PNVKLFNA   EDL+           V GVVTNW LV+  H TQ CMDPNV+E 
Sbjct: 139 SKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDPNVIEL 198

Query: 232 ---------------KVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAI 276
                           V++S+ GHDGPFGA   KR+  I   +++ GMK LDMN AE  +
Sbjct: 199 AGYKNDGTRDLSQKHGVILSTTGHDGPFGAFCAKRIVDIDQNQKLGGMKGLDMNHAEHDV 258

Query: 277 VRLTREV--VPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 325
           V  +     V  M   GMEVAE+DG  RMGPTFGAM +SG  AA   LK  
Sbjct: 259 VIHSGAYAGVDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQILKHF 309

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} Length = 380

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 80.3 bits (197), Expect = 2e-17
 Identities = 52/296 (17%), Positives = 88/296 (29%), Gaps = 46/296 (15%)

Query: 71  SIVSREMTRRY-MTDMITYA-DTDVVVVGAGSAGLSCAYELSK-----NPNIQIAIIEQS 123
           +I  R+  +R+   +M  +A + DVV+VGAG AGLS A  L +       ++++ ++E++
Sbjct: 11  TIYPRDQDKRWEGVNMERFAEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKA 70

Query: 124 VSPGGGAWLGGQLFSA-----------------MVVRKPAHIFLDELGID--------YD 158
              G     G  L                      V +     L E              
Sbjct: 71  AHIGAHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDRFGILTEKYRIPVPILPGLPM 130

Query: 159 EQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH 218
                 V++   L +            V    A A       G   G    +  +     
Sbjct: 131 NNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGA 190

Query: 219 DTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVR 278
              +      + AKV + + G  G       K+       E   G ++            
Sbjct: 191 PKTTFERGLELHAKVTIFAEGCHGHLAKQLYKKFDLRANCEPQGGFQS------------ 238

Query: 279 LTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGT 334
           + +   PG ++ G     ++     G      M SG  AA      L   N    T
Sbjct: 239 IPKLTFPGGLLIGCSPGFMNVPKIKGTHTA--MKSGTLAAESIFNQLTSENLQSKT 292

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

 Score = 63.5 bits (153), Expect = 3e-12
 Identities = 39/260 (15%), Positives = 82/260 (31%), Gaps = 47/260 (18%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLD 151
           DV+V+G G +GL  A   ++     + ++++    G    + G     +  R P    + 
Sbjct: 4   DVIVIGGGPSGLMAAIGAAEE-GANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVK 62

Query: 152 ELGIDYDEQDNYVVIKHAALFTSTI----------------------------MSKLLAR 183
            +  +     +   I +     +                              +   L  
Sbjct: 63  HIPGNGRFLYSAFSIFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKD 122

Query: 184 PNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAK-VVVSSCGHDG 242
             VK+      E +  + G+   V+                   V+E   VV++  G   
Sbjct: 123 LGVKIRTNTPVETIEYENGQTKAVILQ--------------TGEVLETNHVVIAVGGKSV 168

Query: 243 P-FGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAP 301
           P  G+TG     +      +  +    ++  E     ++ +   G+   G EV +I G  
Sbjct: 169 PQTGSTGDGYAWAEKAGHTITELFGGGVSVKEINPKEMSSKFTNGLYFCG-EVLDIHG-Y 226

Query: 302 RMGPTFGAMMISGQKAAHLA 321
             G    + +++G+ A   A
Sbjct: 227 TGGYNITSALVTGRIAGTTA 246

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 52.9 bits (126), Expect = 2e-08
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW 131
           D ++VG+G  G  CA EL K  N ++ +IE+    GG A+
Sbjct: 3   DYIIVGSGLFGAVCANELKKL-NKKVLVIEKRNHIGGNAY 41

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (124), Expect = 3e-08
 Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 14/82 (17%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW-----------LGGQLFSAM 140
           DVVVVG G +G++ A  L  +  + + ++E     GG  +           LGG      
Sbjct: 1   DVVVVGGGISGMAAAKLLHDS-GLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPT 59

Query: 141 VVRKPAHIFLDELGIDYDEQDN 162
             +        ELG++  + + 
Sbjct: 60  --QNRILRLAKELGLETYKVNE 79

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 449

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (124), Expect = 3e-08
 Identities = 13/86 (15%), Positives = 34/86 (39%), Gaps = 12/86 (13%)

Query: 91  TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW----------LGGQLFSAM 140
             V+++G+G +GL+ A +L     + + ++E     GG             LG  + +  
Sbjct: 6   GKVIIIGSGVSGLAAARQLQSF-GMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVT-G 63

Query: 141 VVRKPAHIFLDELGIDYDEQDNYVVI 166
           +   P  +   ++ ++  +      +
Sbjct: 64  LGGNPMAVVSKQVNMELAKIKQKCPL 89

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 51.8 bits (122), Expect = 5e-08
 Identities = 36/260 (13%), Positives = 70/260 (26%), Gaps = 15/260 (5%)

Query: 93  VVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW----------LGGQLFSAMVV 142
           V V+GAG +GL+ AY+L  +  + + + E     GG              G    +    
Sbjct: 4   VAVIGAGVSGLAAAYKLKIH-GLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTMTES-- 60

Query: 143 RKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG 202
                  +D LG+   +Q      K       T +       ++   N ++    +    
Sbjct: 61  EGDVTFLIDSLGLREKQQFPLSQNKRYIARNGTPVLLPSNPIDLIKSNFLSTGSKLQMLL 120

Query: 203 RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVP 262
               +  N  L  ++   +S            V     D     T      S+ M    P
Sbjct: 121 E-PILWKNKKLSQVSDSHESVSGFFQRHFGKEVVDYLIDPFVAGTCGGDPDSLSMHHSFP 179

Query: 263 GMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLAL 322
            +  L+       +  +  ++ P                R   +F  +         +  
Sbjct: 180 ELWNLEKRFGSVILGAIRSKLSPKNEKKQGPPKTSANKKRQRGSFSFLGGMQTLTDAICK 239

Query: 323 KSLGQPNALDGTYVGGVHPE 342
                   L  + V  +   
Sbjct: 240 DLREDELRL-NSRVLELSCS 258

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 51.5 bits (121), Expect = 6e-08
 Identities = 15/40 (37%), Positives = 22/40 (55%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW 131
            V+VVGAG +G+S A  LS+     + I+E +   GG   
Sbjct: 2   RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMH 41

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.6 bits (119), Expect = 1e-07
 Identities = 11/61 (18%), Positives = 27/61 (44%), Gaps = 9/61 (14%)

Query: 81  YMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW---LGGQLF 137
           +M +     + DV+V+G G      +  +S N   ++  ++++   GG +       +L+
Sbjct: 2   HMDE-----EYDVIVLGTGLTECILSGIMSVN-GKKVLHMDRNPYYGGESSSITPLEELY 55

Query: 138 S 138
            
Sbjct: 56  K 56

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Length = 314

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 49.4 bits (117), Expect = 2e-07
 Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 93  VVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW 131
           +++VGAG +G     +L++    Q+ II+Q    GG ++
Sbjct: 5   ILIVGAGFSGAVIGRQLAEK-GHQVHIIDQRDHIGGNSY 42

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

 Score = 49.4 bits (116), Expect = 2e-07
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS-VSPGGGA 130
            +V++GAG  G + A EL       I +++Q  ++  GG+
Sbjct: 3   RIVIIGAGIVGTNLADELVTRGWNNITVLDQGPLNMPGGS 42

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

 Score = 48.3 bits (114), Expect = 4e-07
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 91  TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGG 134
           ++ +++GAG+AGL CA +L+K     + + +     G    + G
Sbjct: 5   SENIIIGAGAAGLFCAAQLAKL-GKSVTVFDNGKKIGRKILMSG 47

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 281

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

 Score = 48.6 bits (114), Expect = 4e-07
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQ 135
           DV+VVGAGS G++  Y+L+K   ++  +++    P       G 
Sbjct: 5   DVIVVGAGSMGMAAGYQLAKQ-GVKTLLVDAFDPPHTNGSHHGD 47

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 356

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 48.8 bits (115), Expect = 4e-07
 Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 90  DTDVVVVGAGSAGLSCAYELS---KNPNIQIAIIEQSVSPGGGAWLGGQ 135
           +TD++++G G +G   AYE +   K   +++ ++E++     GA   G 
Sbjct: 21  ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGAVAQGL 69

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

 Score = 48.6 bits (114), Expect = 6e-07
 Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW 131
            VV+VGAG AGLS AY L+     Q+ ++E S  PGG   
Sbjct: 32  HVVIVGAGMAGLSAAYVLAGA-GHQVTVLEASERPGGRVR 70

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

 Score = 47.8 bits (112), Expect = 6e-07
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW 131
           + VV+G G  G + AY L+K  N   A+ E     G    
Sbjct: 6   EAVVIGGGIIGSAIAYYLAKE-NKNTALFESGTMGGRTTS 44

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 48.0 bits (113), Expect = 7e-07
 Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 91  TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFL 150
           T V+VVGAGSAG + +    K     + +++++   GG + +     +A+  ++     +
Sbjct: 20  TQVLVVGAGSAGFNASLAAKKA-GANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGV 78

Query: 151 DE 152
           ++
Sbjct: 79  ED 80

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

 Score = 48.1 bits (113), Expect = 8e-07
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 91  TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGG 134
           TDVV++G+G AGL+ A         ++ ++E+   PGG   L  
Sbjct: 24  TDVVIIGSGGAGLAAAVSARDA-GAKVILLEKEPIPGGNTKLAA 66

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 47.7 bits (112), Expect = 9e-07
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 90  DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGG 134
             DVVVVG+G AG S A   + +   ++ +IE+    GG A L  
Sbjct: 16  TVDVVVVGSGGAGFSAAISATDS-GAKVILIEKEPVIGGNAKLAA 59

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 298

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

 Score = 47.5 bits (112), Expect = 1e-06
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 90  DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG 128
           + DV+VVGAG +GL   Y L +     + +IE +   GG
Sbjct: 7   EVDVLVVGAGFSGLYALYRL-RELGRSVHVIETAGDVGG 44

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 47.2 bits (111), Expect = 1e-06
 Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 6/87 (6%)

Query: 91  TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFL 150
           T V ++GAG +GL     L K   I   I+E+         +   +    +V       L
Sbjct: 3   TQVAIIGAGPSGLLLGQLLHKA-GIDNVILERQTPDYVLGRIRAGVLEQGMVD-----LL 56

Query: 151 DELGIDYDEQDNYVVIKHAALFTSTIM 177
            E G+D     + +V +   +  +   
Sbjct: 57  REAGVDRRMARDGLVHEGVEIAFAGQR 83

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

 Score = 47.1 bits (110), Expect = 1e-06
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW 131
           +V VVG G +GL+ A+ L         ++E S   GG   
Sbjct: 2   NVAVVGGGISGLAVAHHLRSR-GTDAVLLESSARLGGAVG 40

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

 Score = 46.9 bits (110), Expect = 1e-06
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 4/53 (7%)

Query: 85  MITYADTDVVVVGAGSAGLSCAYELSK-NPNIQIAIIEQSVSPGGGAWL--GG 134
           M T+   D+ +VGAG AGL  A   ++ NPN +IA+I +            GG
Sbjct: 1   MQTF-QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGG 52

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.7 bits (109), Expect = 1e-06
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 90  DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW 131
           D DV+V+G G      +  LS +   ++  I++    GG A 
Sbjct: 5   DYDVIVLGTGITECILSGLLSVD-GKKVLHIDKQDHYGGEAA 45

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Length = 385

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

 Score = 46.8 bits (110), Expect = 2e-06
 Identities = 13/30 (43%), Positives = 20/30 (66%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIE 121
           D ++ G G  GL+ A  L++NPNI + +IE
Sbjct: 19  DYIIAGGGLTGLTTAARLTENPNISVLVIE 48

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Length = 391

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

 Score = 46.4 bits (109), Expect = 3e-06
 Identities = 12/30 (40%), Positives = 21/30 (70%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIE 121
           D ++ G G  GL+ A +L++NP I++ +IE
Sbjct: 26  DYIIAGGGLTGLTVAAKLTENPKIKVLVIE 55

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

 Score = 45.9 bits (107), Expect = 4e-06
 Identities = 30/166 (18%), Positives = 55/166 (33%), Gaps = 15/166 (9%)

Query: 91  TDVVVVGAGSAGLSCAYELS----KNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA 146
            DV++VGAG AGL  A  LS    + P++++ II++  +             A  ++   
Sbjct: 8   CDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQ-------ADGLQCRT 60

Query: 147 HIFLDELGIDYDEQDNYVVIKHAALFTSTIMSK--LLARPNVKLFNAVAAEDLIVKGGRV 204
              L  LG+          +   AL+            R    L        +++  GR+
Sbjct: 61  LESLKNLGLADKILSEANDMSTIALYNPDENGHIRRTDRIPDTLPGISRYHQVVLHQGRI 120

Query: 205 GGVVTNWA--LVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATG 248
              + +    +       +  + P  ME     +      P   T 
Sbjct: 121 ERRILDSIAEISDTRIKVERPLIPEKMEIDSSKAEDPEAYPVTMTL 166

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} Length = 268

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

 Score = 45.0 bits (105), Expect = 5e-06
 Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 85  MITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRK 144
           ++ ++   VVV+G+G  GLS A  L++     + I+ + +     +      ++      
Sbjct: 1   LMMHSQKRVVVLGSGVIGLSSALILARK-GYSVHILARDLPEDVSSQTFASPWAGANWTP 59

Query: 145 PA 146
             
Sbjct: 60  FM 61

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

 Score = 45.1 bits (105), Expect = 5e-06
 Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 7/68 (10%)

Query: 91  TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFL 150
             + VVG   +GL+ A  L     + + + E+S  P  G   G  +      +     +L
Sbjct: 5   DRIAVVGGSISGLTAALMLRDA-GVDVDVYERSPQPLSGFGTGIVV------QPELVHYL 57

Query: 151 DELGIDYD 158
            E G++ D
Sbjct: 58  LEQGVELD 65

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 44.7 bits (104), Expect = 7e-06
 Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 7/77 (9%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLD 151
           D+++ GAG  GLSCA  L +    ++ ++E S                + ++  A   L 
Sbjct: 3   DILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGV-------GINIQPAAVEALA 55

Query: 152 ELGIDYDEQDNYVVIKH 168
           ELG+        +    
Sbjct: 56  ELGLGPALAATAIPTHE 72

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 335

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 44.6 bits (104), Expect = 9e-06
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 93  VVVVGAGSAGLSCAYELSK-NPNIQIAIIEQSVSPGG 128
           + ++GAG +GL  A  L       Q+ + E+  SPGG
Sbjct: 7   IAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGG 43

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 43.0 bits (100), Expect = 2e-05
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 1/83 (1%)

Query: 89  ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHI 148
           A+ DVVV+G G  G S A+  +    +++AI+E+  + GG     G + S  ++   A I
Sbjct: 5   AEYDVVVLGGGPGGYSAAFAAADE-GLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVI 63

Query: 149 FLDELGIDYDEQDNYVVIKHAAL 171
                      +     +    L
Sbjct: 64  DEVRHLAANGIKYPEPELDIDML 86

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} Length = 230

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.0 bits (100), Expect = 2e-05
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 93  VVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLGGQLF 137
           + VVG+G AG   A  L K+     + I E+ + P G    G    
Sbjct: 4   ICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPD 49

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 246

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 42.9 bits (100), Expect = 2e-05
 Identities = 12/76 (15%), Positives = 26/76 (34%), Gaps = 5/76 (6%)

Query: 93  VVVVGAGSAGLSCAYELSKN-----PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAH 147
           VVV+GAG  GLS A  + +        + + +     +P     +   L+          
Sbjct: 3   VVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRFTPFTTTDVAAGLWQPYTSEPSNP 62

Query: 148 IFLDELGIDYDEQDNY 163
              +     ++   ++
Sbjct: 63  QEANWNQQTFNYLLSH 78

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

 Score = 42.2 bits (98), Expect = 5e-05
 Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 91  TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG-AWLGGQLFSAM 140
            DV+++G+G+AGLS A  L+      + ++ +     G   +  G + +  
Sbjct: 8   CDVLIIGSGAAGLSLALRLADQHQ--VIVLSKGPVTEGSTFYAQGGIAAVF 56

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 41.6 bits (96), Expect = 5e-05
 Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 1/79 (1%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLD 151
           DV+V+GAG  G   A + ++   ++ A+IE+     G   LGG   +   +   A +   
Sbjct: 5   DVIVIGAGPGGYVAAIKSAQL-GLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSS 63

Query: 152 ELGIDYDEQDNYVVIKHAA 170
               +  E      I    
Sbjct: 64  YKFHEAHESFKLHGISTGE 82

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (96), Expect = 6e-05
 Identities = 26/158 (16%), Positives = 45/158 (28%), Gaps = 9/158 (5%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG-----GAWLGGQLFSAMVVRKPA 146
           DVV++G G AG   A + ++      A +E+    GG     G      L +   +    
Sbjct: 7   DVVIIGGGPAGYVAAIKAAQL-GFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQM 65

Query: 147 HIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGG 206
           H    + GID +      V          +         +   N V         G    
Sbjct: 66  HTEAQKRGIDVNGDIKINVANFQKAKDDAVKQLTGGIELLFKKNKV---TYYKGNGSFED 122

Query: 207 VVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF 244
                       +     D  +    ++V++     PF
Sbjct: 123 ETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPF 160

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

 Score = 41.7 bits (96), Expect = 7e-05
 Identities = 8/42 (19%), Positives = 15/42 (35%), Gaps = 1/42 (2%)

Query: 91  TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWL 132
            D +V+G G AGL  A    +   +   ++         +  
Sbjct: 6   CDSLVIGGGLAGLRAAVATQQK-GLSTIVLSLIPVKRSHSAA 46

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 41.0 bits (95), Expect = 9e-05
 Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 90  DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIF 149
           + DVV++G G  G   A + ++    +   IE+     GG  L      +  +   +H++
Sbjct: 3   ENDVVIIGGGPGGYVAAIKAAQL-GFKTTCIEKR-GALGGTCLNVGCIPSKALLHSSHMY 60

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} Length = 351

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

 Score = 41.4 bits (96), Expect = 1e-04
 Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 15/79 (18%)

Query: 54  ASPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNP 113
            +  +D +   F          E+   Y          D V+VG G++G   A  LS+  
Sbjct: 3   TTSDHDFSYLSFAY---DATDLELEGSY----------DYVIVGGGTSGCPLAATLSEKY 49

Query: 114 NIQIAIIEQSVSPGGGAWL 132
              + ++E+   P     +
Sbjct: 50  K--VLVLERGSLPTAYPNV 66

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 239

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 40.8 bits (94), Expect = 1e-04
 Identities = 31/229 (13%), Positives = 62/229 (27%), Gaps = 28/229 (12%)

Query: 93  VVVVGAGSAGLSCAYELSK------NPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA 146
           + +VG+G +    A  L K      + ++ + ++E   +P G       L  + V     
Sbjct: 5   IAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWG-------LVRSGVAPDHP 57

Query: 147 HIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAED--LIVKGGRV 204
            I       +   +D         +    +    L+     +  AV A+   +   G   
Sbjct: 58  KIKSISKQFEKTAEDPRFRFFGNVVVGEHVQPGELSERYDAVIYAVGAQSRGVPTPGLPF 117

Query: 205 GGVVTNWALVSMNHDTQSCM---DPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEV 261
                    V    +                 V+ +   D          +K++G  +E 
Sbjct: 118 DDQSGTIPNVGGRINGSPNEYVVGWIKRGPTGVIGTNKKDAQDTVD--TLIKNLGNAKEG 175

Query: 262 PGMKALDMNSAEDAIVRLTREVVPGMIVTG--------MEVAEIDGAPR 302
              K+   + A+     L       +                E  G PR
Sbjct: 176 AECKSFPEDHADQVADWLAARQPKLVTSAHWQVIDAFERAAGEPHGRPR 224

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} Length = 330

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

 Score = 40.6 bits (94), Expect = 2e-04
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 90  DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLG 133
           + D VV+GAG AG+  A ++S++     A++ +           
Sbjct: 7   EFDAVVIGAGGAGMRAALQISQS-GQTCALLSKVFPTRSHTVSA 49

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

 Score = 40.7 bits (94), Expect = 2e-04
 Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIE 121
             +V+G+G  G   A  L++   I   I+E
Sbjct: 9   PALVIGSGYGGAVAALRLTQ-AGIPTQIVE 37

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 235

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.1 bits (92), Expect = 2e-04
 Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 90  DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG 129
           D D++++G GS GL+ A E +K  + ++ +++       G
Sbjct: 3   DFDLIIIGGGSGGLAAAKEAAKF-DKKVMVLDFVTPTPLG 41

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} Length = 367

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

 Score = 40.4 bits (93), Expect = 2e-04
 Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 1/30 (3%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIE 121
             VV+G G      A  L +   +Q  ++E
Sbjct: 4   PAVVIGTGYGAAVSALRLGE-AGVQTLMLE 32

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 39.4 bits (91), Expect = 3e-04
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 90  DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWL 132
           +T+ +VVGAG  G   A   ++    ++ I+E+     GG  L
Sbjct: 3   ETETLVVGAGPGGYVAAIRAAQL-GQKVTIVEK--GNLGGVCL 42

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 198

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

 Score = 39.1 bits (89), Expect = 3e-04
 Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 6/82 (7%)

Query: 93  VVVVGAGSAGLSCAYELSK-NPNIQIAIIEQS-----VSPGGGAWLGGQLFSAMVVRKPA 146
           V+V+G+   G     EL   +P+ +I   E+      +S G   +L G++     VR   
Sbjct: 3   VIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMT 62

Query: 147 HIFLDELGIDYDEQDNYVVIKH 168
              ++  G++         I+ 
Sbjct: 63  GEKMESRGVNVFSNTEITAIQP 84

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Length = 379

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

 Score = 39.6 bits (91), Expect = 4e-04
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIE 121
           DVV+VG+G  G + A EL      ++A+ +
Sbjct: 6   DVVIVGSGPIGCTYARELVGA-GYKVAMFD 34

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 38.9 bits (89), Expect = 4e-04
 Identities = 21/153 (13%), Positives = 42/153 (27%), Gaps = 2/153 (1%)

Query: 91  TDVVVVGAGSAGLSCAYELSKN--PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHI 148
           T +V++G G AG   A   + +     Q+ +I+     G             +       
Sbjct: 2   TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDGIGGAAVLDDCVPSKTFIASTGLRT 61

Query: 149 FLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVV 208
            L          D            + + +   A+        ++    ++ G       
Sbjct: 62  ELRRAPHLGFHIDFDDAKISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDS 121

Query: 209 TNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD 241
           T          T +    +  EA VV+ + G  
Sbjct: 122 TPGLARHRIKATAADGSTSEHEADVVLVATGAS 154

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 38.8 bits (89), Expect = 5e-04
 Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 5/72 (6%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLF----SAMVVRKPAH 147
           D + +G GS G++     +     + A+IE     G    +G         A  +R+  H
Sbjct: 4   DYIAIGGGSGGIASINRAAMY-GQKCALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIH 62

Query: 148 IFLDELGIDYDE 159
           ++  + G D   
Sbjct: 63  MYGPDYGFDTTI 74

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

 Score = 39.2 bits (90), Expect = 5e-04
 Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIE 121
           D ++VGAG  G+  A  LS+    ++ ++E
Sbjct: 4   DYIIVGAGPGGIIAADRLSEAGK-KVLLLE 32

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 6e-04
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 89  ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAM 140
           A  D +V+G GS GL+ A   ++    + A++E     G    +G      M
Sbjct: 2   ASYDYLVIGGGSGGLASARRAAEL-GARAAVVESHKLGGTCVNVGCVPKKVM 52

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 259

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 38.5 bits (88), Expect = 7e-04
 Identities = 13/41 (31%), Positives = 27/41 (65%), Gaps = 3/41 (7%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWL 132
           D++V+G GS G++ A   +++ N ++A++E+  S  GG  +
Sbjct: 3   DLIVIGGGSGGMAAARRAARH-NAKVALVEK--SRLGGTCV 40

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 220

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 38.1 bits (87), Expect = 8e-04
 Identities = 8/38 (21%), Positives = 15/38 (39%), Gaps = 1/38 (2%)

Query: 90  DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPG 127
            T ++++G G  G   A    +   I   ++E     G
Sbjct: 5   QTTLLIIGGGPGGYVAAIRAGQL-GIPTVLVEGQALGG 41

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 240

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 38.0 bits (87), Expect = 0.001
 Identities = 12/42 (28%), Positives = 21/42 (50%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLG 133
           D+VV+GAGS GL   +  +     ++A+I+     G   +  
Sbjct: 5   DLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAA 46

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 238

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 13/38 (34%), Positives = 22/38 (57%)

Query: 92  DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG 129
           D+VV+GAGS GL  A+  +     ++A+I+  +  G  
Sbjct: 5   DLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMVHGPP 42

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 35.9 bits (81), Expect = 0.004
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 93  VVVVGAGSAGLSCAYELSKNPNIQIAIIE 121
           + ++GAG A +SCA  L++     I I E
Sbjct: 7   IALLGAGPASISCASFLARLGYSDITIFE 35

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

 Score = 35.5 bits (80), Expect = 0.004
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)

Query: 93  VVVVGAGSAGLSCAYELSK-NPNIQIAIIE 121
           VVVVG G+ G + A  +   +P+I++ +IE
Sbjct: 5   VVVVGGGTGGATAAKYIKLADPSIEVTLIE 34

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	356
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	99.97
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	99.88
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.86
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.82
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.81
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	99.75
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	99.75
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.75
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	99.68
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	99.68
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	99.62
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.59
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.59
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.55
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.53
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	99.47
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	99.46
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	99.44
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	99.42
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	99.41
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	99.35
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.34
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	99.32
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.31
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.29
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.28
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	99.28
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	99.26
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.23
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	99.19
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	99.18
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	99.17
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.14
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	99.14
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	99.13
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.12
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.12
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	99.11
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.11
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	99.11
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	99.09
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	99.08
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.08
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.06
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.04
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	99.01
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.01
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	99.01
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.98
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.98
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.96
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.95
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	98.94
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.94
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.94
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	98.93
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	98.93
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	98.92
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.92
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.92
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	98.91
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.9
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.88
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.85
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.84
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	98.83
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.82
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.82
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	98.81
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.75
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	98.74
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	98.71
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	98.7
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	98.69
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	98.61
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.59
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	98.55
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	98.49
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.43
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	98.42
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.3
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.28
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.23
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.18
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	98.1
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.06
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	97.96
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	97.93
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	97.89
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	97.87
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	97.86
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	97.6
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.43
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	97.01
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	96.29
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.16
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	95.91
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	95.66
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	95.49
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	95.45
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	95.09
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	95.06
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	94.89
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	94.55
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	94.49
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	94.07
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	93.83
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	93.73
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	93.2
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	92.9
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	92.86
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	92.74
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	92.73
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	92.61
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	92.45
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	92.4
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	92.14
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	92.1
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	91.98
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	91.87
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	91.84
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	91.67
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	91.28
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	90.77
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	90.73
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	90.52
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	90.39
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	89.87
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	89.62
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	89.48
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	89.26
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	89.25
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	89.23
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	89.22
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	89.14
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	88.97
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	88.94
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	88.91
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	88.71
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	88.7
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	88.69
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	88.54
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	88.51
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	88.45
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	87.95
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	87.32
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	87.2
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	86.61
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	86.26
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	85.78
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	85.36
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	85.36
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	85.07
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	85.05
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	84.9
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	84.86
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	84.81
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	84.7
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	84.59
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	84.42
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	84.19
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	83.99
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	83.22
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	82.75
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	82.07
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	81.42
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	81.07
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	80.44
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	80.06

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=99.97  E-value=3.1e-31  Score=242.99  Aligned_cols=278  Identities=90%  Similarity=1.358  Sum_probs=221.1

Q ss_pred             CCCCCCccCCCccchhhHHHHHHHhhhcccCCcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccc
Q 018414           58 YDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLF  137 (356)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~  137 (356)
                      ||.+.|.|.|++++..++.|.++||.+|++..++||+|||||++||++|++|+++.|++|+||||.+.+||.+|++++.+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~~~g~~~   80 (278)
T d1rp0a1           1 YDLNAFTFDPIKESIVSREMTRRYMTDMITYAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLF   80 (278)
T ss_dssp             CCTTSCCCCCCCHHHHHHHHHHHHHHHHHHHTEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTC
T ss_pred             CCccCceeecchHHHHhHHHHHhhhcccccccCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCceeecCEEc
Confidence            68999999999999999999999999998888999999999999999999998733999999999999999999988887


Q ss_pred             hhhhccchHHHHHHHhCCCccccCCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecc
Q 018414          138 SAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMN  217 (356)
Q Consensus       138 ~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~  217 (356)
                      ............+.++++.+.....+............++.+..+..++.++.++.+.++..+++++.++...+......
T Consensus        81 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~gv~~~~~~~~~~  160 (278)
T d1rp0a1          81 SAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQN  160 (278)
T ss_dssp             CCEEEETTTHHHHHHHTCCCEECSSEEEESCHHHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTC
T ss_pred             CHHHHhhhHHHHHHHcCCceecCCccceecccHHHHHHHHHHHHHhCCCEEEeCCcceeeeecCCeEEEEEeccceeeee
Confidence            76666666677788999999887777666666666666666666688999999999999999999998887654322222


Q ss_pred             cCCCCCCCCeEEEcCEEEEcCCCCCCCCCccchhhhccCcccccccccccccccccceeeeccccccCceeEeceEEEEe
Q 018414          218 HDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEI  297 (356)
Q Consensus       218 ~~~~~~g~~~~i~Ak~VI~AtGg~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~~~~~~~~~  297 (356)
                      .......+..+++++.||+|+|..+.........+...+..........++....+..++....++.+|+++.|+.+...
T Consensus       161 ~~~~~~~~~~~~~a~~vv~a~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~vv~~~~~~~~g~~~~G~~v~~~  240 (278)
T d1rp0a1         161 HHTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEI  240 (278)
T ss_dssp             TTTSSCCCCEEEEEEEEEECCCSSSTTTTHHHHHHHHTTSSSCCCCCEEECHHHHHHHHHHHCEEEETTEEECTHHHHHH
T ss_pred             ecccccccceeeccceEEECcCCCcccccchhhhcccccceeecccccccccccCCceEEEeeeEEeeCeEEeeeEEeee
Confidence            22223335578999999999997765554444444444443334444455555445555555667789999999888888


Q ss_pred             cCCcccCCccceeeeehHHHHHHHHHHhCCCCCCCCcc
Q 018414          298 DGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTY  335 (356)
Q Consensus       298 ~g~~~~~~~~g~~l~sG~~~~~l~l~~~~~~~~~~~~~  335 (356)
                      ++..|+++.||.|+++|.++++++++.|+.|...||.+
T Consensus       241 ~~~~R~~~~~g~~~~sG~~aA~~~~~~lg~~~~~dg~~  278 (278)
T d1rp0a1         241 DGAPRMGPTFGAMMISGQKAGQLALKALGLPNAIDGTL  278 (278)
T ss_dssp             HTCEECCSCCHHHHHHHHHHHHHHHHHTTCCCTTTTCC
T ss_pred             ccCCccCCccchhhccchHHHHHHHHHcCCCcccCCCC
Confidence            88899999999999999999999999999999988863

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=9e-22  Score=182.31  Aligned_cols=269  Identities=57%  Similarity=0.941  Sum_probs=192.0

Q ss_pred             CCCCCCccCCCccchhhHHHHHHHhhhcccCCcccEEEECCCHHHHHHHHHhhc-CCCCeEEEEeccCCCCCccccCCcc
Q 018414           58 YDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSK-NPNIQIAIIEQSVSPGGGAWLGGQL  136 (356)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~DVvIIGgG~aGl~aA~~La~-~~G~~V~llEk~~~~Gg~~~~~g~~  136 (356)
                      .+++.+.+.++++....+.|.+.++.+|.+..++||+|||+|++||+||+.|++ ++|++|+|+|++..+||..+.++..
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   97 (311)
T d2gjca1          18 EDWSDFKFAPIRESTVSRAMTSRYFKDLDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQL   97 (311)
T ss_dssp             TTCTTCCCCCCCHHHHHHHHHHHHHHHHHHTTEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCGGG
T ss_pred             cccccceeeechhhHHHHHHHhhhccccccccCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCcceeEecCEe
Confidence            366678899999999999999999988887788999999999999999999996 3499999999999999999888887


Q ss_pred             chhhhccchHHHHHHHhCCCccccCCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCC------eEEEEEEc
Q 018414          137 FSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG------RVGGVVTN  210 (356)
Q Consensus       137 ~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~------~v~gv~~~  210 (356)
                      +............+.++|+.+..............+...+........|++++....+.++....+      +..++...
T Consensus        98 ~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~  177 (311)
T d2gjca1          98 FSAMVMRKPAHLFLQELEIPYEDEGDYVVVKHAALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTN  177 (311)
T ss_dssp             CCCEEEETTTHHHHHHTTCCCEECSSEEEESCHHHHHHHHHHHHHTSTTEEEETTEEEEEEEECCCC-----CEEEEEEE
T ss_pred             CCHHHHHhHHHHHHHhCCcEEEEeccccEEEeeeeeechhhhhhhccCCCEEecccccceeEecCCceeeccceEEEEEc
Confidence            776666666677888999999887776666666666656666666678999999999888877543      22233222


Q ss_pred             ceeeecccCCCCCCCCeEEE---------------cCEEEEcCCCCCCCCCccchhhhccCcccccccccccccccccce
Q 018414          211 WALVSMNHDTQSCMDPNVME---------------AKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDA  275 (356)
Q Consensus       211 ~~~~~~~~~~~~~g~~~~i~---------------Ak~VI~AtGg~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  275 (356)
                      +..+..........+...+.               .+.++.++|..+.......+.....+.....+...+++....++.
T Consensus       178 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  257 (311)
T d2gjca1         178 WTLVTQAHGTQCCMDPNVIELAGYKNDGTRDLSQKHGVILSTTGHDGPFGAFCAKRIVDIDQNQKLGGMKGLDMNHAEHD  257 (311)
T ss_dssp             EHHHHTC---CCCCCCEEEEESCCCSSSCCCSSTTCCEEEECCCCC--CCSHHHHHHHHHHSSCCCCCCCCBCHHHHHHH
T ss_pred             ceEEEEeeccccccCHHHHHhhhheeEEecCccccceEEEEccccCceeEeeeeeEEEecccccccccccceeeccCCCe
Confidence            22111111100011112222               245777777665544444445544444444555555555555555


Q ss_pred             eeeccc--cccCceeEeceEEEEecCCcccCCccceeeeehHHHHHHHHHHhC
Q 018414          276 IVRLTR--EVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLG  326 (356)
Q Consensus       276 ~~~~~~--e~~~g~~~~~~~~~~~~g~~~~~~~~g~~l~sG~~~~~l~l~~~~  326 (356)
                      ++....  ...||+++.|+.+....+.+|+++.+|.|+.||..+++.|++.|.
T Consensus       258 iv~~~~~~~~~pgl~~~Gdaa~~v~g~~r~G~t~g~m~~sG~~aA~~i~~~l~  310 (311)
T d2gjca1         258 VVIHSGAYAGVDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQILKHFA  310 (311)
T ss_dssp             HHHHCEECTTSTTEEECTHHHHHHHTCCBCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEECCCcEEccCCEEEEeeecCcccCcCCccHHHHHHHHHHHHHHHHHHHHhc
Confidence            543322  346899999999888899999999999999999999999999874

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.86  E-value=1.3e-21  Score=174.83  Aligned_cols=215  Identities=19%  Similarity=0.290  Sum_probs=144.2

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCc---------cchh--------------hh---cc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQ---------LFSA--------------MV---VR  143 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~---------~~~~--------------~~---~~  143 (356)
                      +|||+|||||++|++||+.|+++ |++|+||||+..+|+..+..+.         ....              ..   ..
T Consensus         2 ~yDViIIGaG~aGl~aA~~la~~-G~~V~liEk~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (251)
T d2i0za1           2 HYDVIVIGGGPSGLMAAIGAAEE-GANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNN   80 (251)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHC-CCcEEEEeCCCCCCcceeccCCcceecccccccchhhcccccchhhhhhhhhhhhh
Confidence            69999999999999999999999 9999999999887754321110         0000              00   01


Q ss_pred             chHHHHHHHhCCCccccCCe---EEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCC
Q 018414          144 KPAHIFLDELGIDYDEQDNY---VVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDT  220 (356)
Q Consensus       144 ~~~~~~l~~~G~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~  220 (356)
                      .....++..+|+++......   +.......+.+.|.+.+. +.|++++++++|++|..+++++.++.+.+         
T Consensus        81 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~-~~gv~i~~~~~v~~i~~~~~~~~~v~~~~---------  150 (251)
T d2i0za1          81 EDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLK-DLGVKIRTNTPVETIEYENGQTKAVILQT---------  150 (251)
T ss_dssp             HHHHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHH-HTTCEEECSCCEEEEEEETTEEEEEEETT---------
T ss_pred             HHHHHHHHhcCCccccccccceecccccHHHHHHHHHHHHH-HcCCcccCCcEEEEEEEECCEEEEEEeCC---------
Confidence            12346777888877654322   222345677888888886 67999999999999999999998888753         


Q ss_pred             CCCCCCeEEEcCEEEEcCCCCCCC--CC--ccchhhhccCc--ccccccccccccccccceeeeccccccCceeEeceEE
Q 018414          221 QSCMDPNVMEAKVVVSSCGHDGPF--GA--TGVKRLKSIGM--IEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEV  294 (356)
Q Consensus       221 ~~~g~~~~i~Ak~VI~AtGg~~~~--~~--~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~~~~~~  294 (356)
                           ..+++||.||+|||+.+.+  |.  .+++.+...++  ....++..++...    ....+.....+|+++.|..+
T Consensus       151 -----g~~i~a~~vI~AtGg~S~p~~Gs~g~g~~~a~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~~~~g~~l  221 (251)
T d2i0za1         151 -----GEVLETNHVVIAVGGKSVPQTGSTGDGYAWAEKAGHTITELFGGGVSVKEI----NPKEMSSKFTNGLYFCGEVL  221 (251)
T ss_dssp             -----CCEEECSCEEECCCCSSSGGGSCSSHHHHHHHHTTCCEEEEEEEEECGGGE----ETTTTEESSSBTEEECGGGB
T ss_pred             -----CCeEecCeEEEccCCccccccCCCcccchhcccceeeeeeeeecccCcccc----CchhHHHhcCCCcEeeeeEE
Confidence                 4679999999999998732  22  45677777777  3333444442211    11112222348888877433


Q ss_pred             EEecCCcccCCccceeeeehHHHHHHHHHHhC
Q 018414          295 AEIDGAPRMGPTFGAMMISGQKAAHLALKSLG  326 (356)
Q Consensus       295 ~~~~g~~~~~~~~g~~l~sG~~~~~l~l~~~~  326 (356)
                      . ..+ ...++.+..++.+|..+++.+-++.+
T Consensus       222 ~-~~~-~~gG~~~~~a~~~G~~a~~~~~~~~~  251 (251)
T d2i0za1         222 D-IHG-YTGGYNITSALVTGRIAGTTAGENAK  251 (251)
T ss_dssp             S-CBC-CTTTHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             E-ccC-CcchHHHHHHHHHHHHHHHHHHHhcC
Confidence            2 222 22345566677899999998877653

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.82  E-value=1e-19  Score=167.48  Aligned_cols=204  Identities=20%  Similarity=0.316  Sum_probs=130.2

Q ss_pred             cCCcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcccc-CCccch---------------------------
Q 018414           87 TYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWL-GGQLFS---------------------------  138 (356)
Q Consensus        87 ~~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~-~g~~~~---------------------------  138 (356)
                      +..+|||||||+|++|+++|++|+++ |++|+||||....||++.. +|.+..                           
T Consensus        13 p~e~~DVlVIG~G~aGl~aA~~la~~-G~~V~lvEK~~~~gG~s~~s~G~~~~~~~~~~~~~~~~d~~~~~~~d~~~~~~   91 (308)
T d1y0pa2          13 PHDTVDVVVVGSGGAGFSAAISATDS-GAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQ   91 (308)
T ss_dssp             CSEECSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTT
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCCCCcceecCCCCccccchhhhhhhccchHHHHHHHHHhhhh
Confidence            34579999999999999999999999 9999999999887765532 221100                           


Q ss_pred             ----h----hhcc--chHHHHHHHhCCCccccCC--------eEE----EechHHHHHHHHHHHHcCCCcEEEcCeEEEE
Q 018414          139 ----A----MVVR--KPAHIFLDELGIDYDEQDN--------YVV----IKHAALFTSTIMSKLLARPNVKLFNAVAAED  196 (356)
Q Consensus       139 ----~----~~~~--~~~~~~l~~~G~~~~~~~~--------~~~----~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~  196 (356)
                          .    .+..  ...++||.++|++|.....        ...    ......+...+++.+. +.|+++++++++++
T Consensus        92 ~~~d~~lv~~~~~~~~~~i~~L~~~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~-~~gv~i~~~~~v~~  170 (308)
T d1y0pa2          92 NINDPALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAV-KRNIDLRMNTRGIE  170 (308)
T ss_dssp             TCSCHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHH-HTTCEEESSEEEEE
T ss_pred             hccchHHHHHHHHhhhHHHHHHHHcCCCccccccccccccccccccccccchHHHHHHHHHHHHH-hccceEEEeeccch
Confidence                0    0000  1345788999998764311        111    0122456677777776 57999999999999


Q ss_pred             EEEeC-CeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCCCC----------------------ccchhhh
Q 018414          197 LIVKG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGA----------------------TGVKRLK  253 (356)
Q Consensus       197 i~~~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~~~----------------------~~~~~~~  253 (356)
                      ++.++ ++|.||.+.+      .+    +...+|+||.||+|||+++....                      .++....
T Consensus       171 li~~~~G~V~Gv~~~~------~~----~~~~~i~Ak~VVlAtGG~~~n~~~~~~~~p~~~~~~~~~~~~~tGdg~~ma~  240 (308)
T d1y0pa2         171 VLKDDKGTVKGILVKG------MY----KGYYWVKADAVILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAE  240 (308)
T ss_dssp             EEECTTSCEEEEEEEE------TT----TEEEEEECSEEEECCCCCTTCHHHHHHHCGGGTTCCBCSCTTCSSHHHHHHH
T ss_pred             hhhhcccccccccccc------cc----cceeEeecCeEEEccCcccccHHHHHHhccchhhhcccCCCcccCHHHHHHH
Confidence            99865 6899998753      11    12467999999999999874321                      1111111


Q ss_pred             ccCcccccccccccccccccceeeeccccccCceeEeceEEEEecCCcccCCcc
Q 018414          254 SIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTF  307 (356)
Q Consensus       254 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~~~~~~~~~~g~~~~~~~~  307 (356)
                      ..|-     .+..+++......++....++.||+|..|....-+.|.+|++..|
T Consensus       241 ~aGa-----~l~~me~vq~~p~~~~~~~~~~~gl~a~G~~~~g~hg~nrlg~~~  289 (308)
T d1y0pa2         241 NAGG-----ALKDMQYIDTKAEVMNAKKQVIPGLYGAGEVTGGVHGANRLGGNA  289 (308)
T ss_dssp             HTTC-----CEECTTCBCTTCEEECTTSCEEEEEEECSTTEESSSTTSCCTTHH
T ss_pred             HcCC-----CccCccceecccceecCCCCcccceeehhhhhccccCcCCCchhh
Confidence            1111     012222222223334555667899998876544455678887754

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.81  E-value=1.2e-19  Score=168.36  Aligned_cols=145  Identities=20%  Similarity=0.303  Sum_probs=103.5

Q ss_pred             cCCcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccc-cCCccc--------------------hh------
Q 018414           87 TYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW-LGGQLF--------------------SA------  139 (356)
Q Consensus        87 ~~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~-~~g~~~--------------------~~------  139 (356)
                      ..+.+||||||+|++|+++|+.|+++ |++|+||||.+..||.+. ..|.+.                    ..      
T Consensus        20 ~~et~DVvVIG~G~aGl~aA~~la~~-G~~V~llEk~~~~gG~s~~s~Ggi~~~~~~~~~~~~~~d~~~~~~~d~~~~~~   98 (322)
T d1d4ca2          20 VKETTDVVIIGSGGAGLAAAVSARDA-GAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGR   98 (322)
T ss_dssp             CCEECSEEEECSSHHHHHHHHHHHTT-TCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTT
T ss_pred             CCCcceEEEECcCHHHHHHHHHHHHC-CCcEEEEeCCCCCCCcccccCCcccccCchhhhhcccCCCHHHHHHHHHhccc
Confidence            34469999999999999999999999 999999999988776542 222110                    00      


Q ss_pred             ---------hhcc--chHHHHHHHhCCCccccCC--------eEE----EechHHHHHHHHHHHHcCCCcEEEcCeEEEE
Q 018414          140 ---------MVVR--KPAHIFLDELGIDYDEQDN--------YVV----IKHAALFTSTIMSKLLARPNVKLFNAVAAED  196 (356)
Q Consensus       140 ---------~~~~--~~~~~~l~~~G~~~~~~~~--------~~~----~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~  196 (356)
                               .+.+  ...++||.++|++|.....        ...    ......+.+.|++.+. +.|++|+++++|++
T Consensus        99 ~~~d~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~-~~gv~i~~~t~v~~  177 (322)
T d1d4ca2          99 NINDPELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAV-KRGTDIRLNSRVVR  177 (322)
T ss_dssp             TCSCHHHHHHHHHTHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCSHHHHHHHHHHHHH-HTTCEEETTEEEEE
T ss_pred             cccCHHHhhhhhhhhhhhhhhhhhhcccccccccccccccccccccccccchhHHHHHHHHHHHH-hcCceEEEeeeccc
Confidence                     0000  1346788999998764311        111    1123567778888877 56999999999999


Q ss_pred             EEEe-CCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          197 LIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       197 i~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      ++.+ +++|.||.+.+      .++    ....|+||.||+|||+++.
T Consensus       178 li~d~~G~V~Gv~~~~------~~~----~~~~i~Ak~VIlAtGG~~~  215 (322)
T d1d4ca2         178 ILEDASGKVTGVLVKG------EYT----GYYVIKADAVVIAAGGFAK  215 (322)
T ss_dssp             EECCSSSCCCEEEEEE------TTT----EEEEEECSEEEECCCCCTT
T ss_pred             ccccccccccceEEEe------ecc----cEEEEeCCeEEEcCCCccc
Confidence            9885 57899998753      111    2467999999999999874

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.75  E-value=3.4e-18  Score=158.26  Aligned_cols=220  Identities=21%  Similarity=0.302  Sum_probs=135.2

Q ss_pred             cCCcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccc-cCCccc--------------------hhh-----
Q 018414           87 TYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW-LGGQLF--------------------SAM-----  140 (356)
Q Consensus        87 ~~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~-~~g~~~--------------------~~~-----  140 (356)
                      +.+++||||||+|++||+||++|+++ |++|+||||....||.+. .+|.+.                    ...     
T Consensus        16 ~~e~~DVvVIGaG~aGl~AA~~aa~~-G~~V~vlEK~~~~gG~S~~a~Ggi~a~~~~~~~~~g~~d~~~~~~~d~~~~~~   94 (317)
T d1qo8a2          16 PSETTQVLVVGAGSAGFNASLAAKKA-GANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGR   94 (317)
T ss_dssp             CSEEEEEEEECCSHHHHHHHHHHHHH-TCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTT
T ss_pred             CCCccCEEEECcCHHHHHHHHHHHHC-CCcEEEEeCCCCCCCchhhcCCCcccccchhhhhcccCCcHHHHHHHHHHhhc
Confidence            34579999999999999999999999 999999999987766542 222110                    000     


Q ss_pred             ----------hcc--chHHHHHHHhCCCccccCC-----e--EEEe-----chHHHHHHHHHHHHcCCCcEEEcCeEEEE
Q 018414          141 ----------VVR--KPAHIFLDELGIDYDEQDN-----Y--VVIK-----HAALFTSTIMSKLLARPNVKLFNAVAAED  196 (356)
Q Consensus       141 ----------~~~--~~~~~~l~~~G~~~~~~~~-----~--~~~~-----~~~~~~~~l~~~~~~~~gv~i~~~~~v~~  196 (356)
                                +.+  ...++|++++|++|+....     +  ....     ....+...|.+.+. +.|+++++++++++
T Consensus        95 ~~~d~~lv~~~~~~a~~~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~g~~~g~~i~~~L~~~~~-~~g~~i~~~~~v~~  173 (317)
T d1qo8a2          95 QQNDIKLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAK-EQGIDTRLNSRVVK  173 (317)
T ss_dssp             TCSCHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHH-HTTCCEECSEEEEE
T ss_pred             cccchhHHHHHHhhhhhhhhhHHHhhhcccccccccCcccccccccccccccchhhhHHHHHHhh-hccceeeeccchhh
Confidence                      000  1346788999998864311     1  1111     13457778887776 67999999999999


Q ss_pred             EEEe-CCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCCCC----------------------ccchhhh
Q 018414          197 LIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGA----------------------TGVKRLK  253 (356)
Q Consensus       197 i~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~~~----------------------~~~~~~~  253 (356)
                      ++.+ +++|.||.+.+      .    ++....+.||.||+|||+++....                      .++....
T Consensus       174 l~~~~~g~V~Gv~~~~------~----~~~~~~i~Ak~VVlAtGG~~~n~~~~~~~~p~~~~~~~~~~~~~tGdGi~ma~  243 (317)
T d1qo8a2         174 LVVNDDHSVVGAVVHG------K----HTGYYMIGAKSVVLATGGYGMNKEMIAYYRPTMKDMTSSNNITATGDGVLMAK  243 (317)
T ss_dssp             EEECTTSBEEEEEEEE------T----TTEEEEEEEEEEEECCCCCTTCHHHHHHHCGGGTTCEECSCTTCSCHHHHHHH
T ss_pred             eeecccccceeeEeec------c----cceEEEEeccceEEeccccccCHHHHHHhhhccccccccCCCCcCcHHHHHHH
Confidence            9875 67899998753      1    123467899999999999874221                      1111111


Q ss_pred             ccCccccccccccccc----ccccceeeeccccccCceeEeceEEEEecCCcccCCc-cceeeeehHHHHHHHHH
Q 018414          254 SIGMIEEVPGMKALDM----NSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPT-FGAMMISGQKAAHLALK  323 (356)
Q Consensus       254 ~~g~~~~~~~~~~~~~----~~~~~~~~~~~~e~~~g~~~~~~~~~~~~g~~~~~~~-~g~~l~sG~~~~~l~l~  323 (356)
                      ..|.  .   +..+++    .+....++....+.++|+|..|....-+.|.+|++.. .-+.+..|..+.+.+-+
T Consensus       244 ~~Ga--~---l~~me~vq~~~~~~~~~~d~~~~~i~gl~aaGe~~~g~hG~nrlggnsl~~~~vfg~~ag~~aa~  313 (317)
T d1qo8a2         244 EIGA--S---MTDIDWVQAAINTTASVLDLQSKPIDGLFAAGEVTGGVHGYNRLGGNAIADTVVFGRIAGDNAAK  313 (317)
T ss_dssp             HTTB--C---EESTTCEEECBCTTCEEEBTTSCEEEEEEECSTTBCSSSTTCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred             HcCC--e---ecCCcceeeccCCccEEeCCCCCEECCEeehhhhccCCCCCCccccchHHHHHHHHHHHHHHHHH
Confidence            1111  0   111110    0112233445556678999988655555666776532 22333445555554443

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=8.4e-18  Score=155.37  Aligned_cols=230  Identities=20%  Similarity=0.227  Sum_probs=137.1

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcC-CCCeEEEEeccCCCCCcc-ccCCccc------------------------hh---
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGA-WLGGQLF------------------------SA---  139 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~-~G~~V~llEk~~~~Gg~~-~~~g~~~------------------------~~---  139 (356)
                      .++||||||+|+|||+||+++++. +|.+|+||||....++++ |..|.+.                        +.   
T Consensus         4 ~~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~~~g~s~~A~GGi~a~~~~~Ds~e~~~~dt~~~g~~~~d~~~v   83 (311)
T d1kf6a2           4 FQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDVV   83 (311)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGGGGCCSCEECCCSTTCCHHHHHHHHHHHTTTCSCHHHH
T ss_pred             eecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCCCCCcHHHHhhhHhhhcCCCCCHHHHHHHHHhhccCccHHHHH
Confidence            469999999999999999999873 378999999987655544 2222110                        00   


Q ss_pred             -hhc-c-chHHHHHHHhCCCccccCC--eEE----------Ee-----chHHHHHHHHHHHHcCCCcEEEcCeEEEEEEE
Q 018414          140 -MVV-R-KPAHIFLDELGIDYDEQDN--YVV----------IK-----HAALFTSTIMSKLLARPNVKLFNAVAAEDLIV  199 (356)
Q Consensus       140 -~~~-~-~~~~~~l~~~G~~~~~~~~--~~~----------~~-----~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~  199 (356)
                       .+. . ...++||.++|++|+....  +..          ..     ........++++..+..+++++.++.+++|+.
T Consensus        84 ~~~~~~~~~~i~~L~~~g~~f~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~~~~~~l~~~~~~~~v~i~~~~~v~~Ll~  163 (311)
T d1kf6a2          84 DYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILV  163 (311)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCBCTTSSBCCBCCTTCSSCCEECSTTCHHHHHHHHHHHHHTTCTTEEEEETEEEEEEEE
T ss_pred             HHHHHhhhHhHHhhhhcccccccccccccccccccccccccccccccchhhHHHHhHHHHHHccCcceeEeeeEeeeeEe
Confidence             000 1 1346889999998876522  110          11     12456667777777778999999999999999


Q ss_pred             eCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCCCCccchhhhccCccccccccccccccccccee-ee
Q 018414          200 KGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAI-VR  278 (356)
Q Consensus       200 ~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~  278 (356)
                      +++++.|+...+      ..   +++...+.||.||+||||++............+|....+....+..+.. .+++ +.
T Consensus       164 d~g~v~Gvv~~~------~~---~g~~~~~~AkaVILATGG~g~~y~~ttn~~~~tGDG~~mA~~aGa~l~d-me~iq~~  233 (311)
T d1kf6a2         164 DDGHVRGLVAMN------MM---EGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGVPLRD-MGGIETD  233 (311)
T ss_dssp             ETTEEEEEEEEE------TT---TTEEEEEECSCEEECCCCCGGGSSSBSSCTTCSCHHHHHHHTTTCCEES-CCEEECC
T ss_pred             cCCcceeEEEEE------cC---CCcEEEEECCEEEEcCCCccccccccCCCCCcCcHHHHHHHhcccceee-ccccccc
Confidence            999999987642      11   2245678999999999998854432222222222211111112221211 1111 11


Q ss_pred             ccc-cccCceeEeceEEEE-ecCCcccCCcc-ceeeeehHHHHHHHHHHhCCC
Q 018414          279 LTR-EVVPGMIVTGMEVAE-IDGAPRMGPTF-GAMMISGQKAAHLALKSLGQP  328 (356)
Q Consensus       279 ~~~-e~~~g~~~~~~~~~~-~~g~~~~~~~~-g~~l~sG~~~~~l~l~~~~~~  328 (356)
                      .+. .-.++++..+..... ..|.++.+..| ++....+..+.+.+.++....
T Consensus       234 p~~~~~~~~~~~~~~~~~~g~~g~n~~~~~~~~e~~~~~~~~~~~~~~~~~~~  286 (311)
T d1kf6a2         234 QNCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAATA  286 (311)
T ss_dssp             TTSBCSSBTEEECGGGEECSSSTTSCCTTHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             ccchhcccCCCcCcceeeeeeEeccccccccccceeecChHHHHHHHHhhccc
Confidence            111 123566665544433 23446666665 555556666666666655433

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.75  E-value=3.8e-18  Score=152.80  Aligned_cols=185  Identities=17%  Similarity=0.214  Sum_probs=119.9

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc-------ccC---Cccch-----------hhhc---cch
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA-------WLG---GQLFS-----------AMVV---RKP  145 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~-------~~~---g~~~~-----------~~~~---~~~  145 (356)
                      +|||||||||++|++||+.|+++ |++|+||||...+|...       ++-   .....           ..+.   ...
T Consensus         4 ~~DViIIGaG~aGl~aA~~la~~-G~~V~vlEk~~~~G~k~~~sGgG~~n~~n~~~~~~~~~~~~~~~~~~~l~~~~~~~   82 (253)
T d2gqfa1           4 YSENIIIGAGAAGLFCAAQLAKL-GKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWD   82 (253)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHH
T ss_pred             CCcEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCCCCceEecCCccccccCcccCchhhhccChHHHHHHhhhhcccc
Confidence            58999999999999999999999 99999999998876321       110   00000           0010   113


Q ss_pred             HHHHHHHhCCCccccCC--eEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCC--eEEEEEEcceeeecccCCC
Q 018414          146 AHIFLDELGIDYDEQDN--YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQ  221 (356)
Q Consensus       146 ~~~~l~~~G~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~--~v~gv~~~~~~~~~~~~~~  221 (356)
                      ..+++..++..+.....  ++.......+.+.|.+.+. +.|++++++++|+++...++  .+..+...           
T Consensus        83 ~~~~~~~~g~~~~~~~~~~~~~~~~a~~i~~~L~~~~~-~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~-----------  150 (253)
T d2gqfa1          83 FISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECD-KYGAKILLRSEVSQVERIQNDEKVRFVLQV-----------  150 (253)
T ss_dssp             HHHHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHH-HHTCEEECSCCEEEEEECCSCSSCCEEEEE-----------
T ss_pred             hhhhhhhcCcceeeecCCccccccchhHHHHHHHHHHH-HcCCCeecCceEEEEEeecCCceeEEEEec-----------
Confidence            45677888888765533  3333445677788777776 67999999999999988644  22222222           


Q ss_pred             CCCCCeEEEcCEEEEcCCCCCC--CCC--ccchhhhccCc--cccccccc-ccccccccceeeeccccccCceeEece
Q 018414          222 SCMDPNVMEAKVVVSSCGHDGP--FGA--TGVKRLKSIGM--IEEVPGMK-ALDMNSAEDAIVRLTREVVPGMIVTGM  292 (356)
Q Consensus       222 ~~g~~~~i~Ak~VI~AtGg~~~--~~~--~~~~~~~~~g~--~~~~~~~~-~~~~~~~~~~~~~~~~e~~~g~~~~~~  292 (356)
                         +..+++||+||+|||+.+.  +|.  .++.+++.++|  .++.|... ++++..-+....  ....+||+|+.|.
T Consensus       151 ---~~~~~~a~~VIiAtGG~S~p~~G~~g~g~~~a~~~~~~i~~~~~~~~ggv~~~~i~~~t~--es~~~~gl~~~ge  223 (253)
T d2gqfa1         151 ---NSTQWQCKNLIVATGGLSMPGLGATPFGYQIAEQFGIPVIPPRAVTMGGVDTKVISSKTM--ESNQVSGLYFIGE  223 (253)
T ss_dssp             ---TTEEEEESEEEECCCCSSCGGGTCCSHHHHHHHHTTCCEEEEEEEEEEEECGGGBCTTTC--BBSSSTTEEECGG
T ss_pred             ---CCEEEEeCEEEEcCCcccccccCCCchHHHHHHhccccccccccccCCCCcccccCccch--hhhcCCCcEEeee
Confidence               2478999999999998762  222  68899999998  44444322 221111111111  1123589998774

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=99.68  E-value=2.5e-16  Score=145.99  Aligned_cols=145  Identities=19%  Similarity=0.167  Sum_probs=102.7

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc-ccCCccc--------------h---------------
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA-WLGGQLF--------------S---------------  138 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~-~~~g~~~--------------~---------------  138 (356)
                      +.|||||||+|++||+||++|+++ |++|+||||....++.+ |..|.+.              .               
T Consensus         4 ~~~DVvVIG~G~AGl~AAl~aa~~-G~~V~liEK~~~~~g~S~~a~GGi~a~~~~~~~~~~ds~~~~~~d~~~~g~~~~~   82 (336)
T d2bs2a2           4 QYCDSLVIGGGLAGLRAAVATQQK-GLSTIVLSLIPVKRSHSAAAQGGMQASLGNSKMSDGDNEDLHFMDTVKGSDWGCD   82 (336)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHTT-TCCEEEECSSCGGGSGGGGCCSCEECCCCCSGGGTTCCHHHHHHHHHHHTTTCSC
T ss_pred             eecCEEEECcCHHHHHHHHHHHHC-CCCEEEEecCCCCCCchhhccchHhhhccccccCCCCCHHHHHHHHHHhhccccc
Confidence            458999999999999999999999 99999999987555433 3222110              0               


Q ss_pred             h----hhcc--chHHHHHHHhCCCccccCCeE-----------E----------------------Ee-----chHHHHH
Q 018414          139 A----MVVR--KPAHIFLDELGIDYDEQDNYV-----------V----------------------IK-----HAALFTS  174 (356)
Q Consensus       139 ~----~~~~--~~~~~~l~~~G~~~~~~~~~~-----------~----------------------~~-----~~~~~~~  174 (356)
                      .    .+.+  ...+.||..+|++|.......           .                      ..     ....+..
T Consensus        83 ~~~v~~~~~~~~~~i~~l~~~g~~f~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~r~~~~~~~~G~~i~~  162 (336)
T d2bs2a2          83 QKVARMFVNTAPKAIRELAAWGVPWTRIHKGDRMAIINAQKTTITEEDFRHGLIHSRDFGGTKKWRTCYTADATGHTMLF  162 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCCBCCSEEEECCCSSCCCEEEECGGGTTSBCCBCCTTCSSCCEECSTTCHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHhcCCccccccccccccccccccccccccccccceecccCCCcceeeeEeecCCCHHHHHH
Confidence            0    0000  134578888999886542210           0                      00     0245667


Q ss_pred             HHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414          175 TIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF  244 (356)
Q Consensus       175 ~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~  244 (356)
                      .|.+.+. +.|+++++++.+++++.+++++.++...+      ..   +++..++.||.||+|||+++..
T Consensus       163 ~l~~~~~-~~gv~i~~~~~~~~li~~~~~v~g~~~~~------~~---~g~~~~i~Ak~VvlATGG~~~~  222 (336)
T d2bs2a2         163 AVANECL-KLGVSIQDRKEAIALIHQDGKCYGAVVRD------LV---TGDIIAYVAKGTLIATGGYGRI  222 (336)
T ss_dssp             HHHHHHH-HHTCEEECSEEEEEEEEETTEEEEEEEEE------TT---TCCEEEEECSEEEECCCCCGGG
T ss_pred             HHHHHHH-hccccccceeeeeecccccccccceeEEe------cc---CCcEEEEecCeEEEeccccccc
Confidence            7777775 67999999999999999999999887642      11   2356789999999999998743

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=1.2e-16  Score=148.57  Aligned_cols=228  Identities=20%  Similarity=0.317  Sum_probs=139.1

Q ss_pred             cCCcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc-ccCCccc---------------hh-----------
Q 018414           87 TYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA-WLGGQLF---------------SA-----------  139 (356)
Q Consensus        87 ~~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~-~~~g~~~---------------~~-----------  139 (356)
                      +.++|||||||+|+|||+||++|+++ |.+|+||||....++++ |..|.+.               ..           
T Consensus         4 ~~~~~DVlVVG~G~AGl~AAl~aa~~-G~~V~lleK~~~~gg~s~~A~GGi~a~~~~~~~Ds~e~~~~Dtl~aG~~l~d~   82 (330)
T d1neka2           4 PVREFDAVVIGAGGAGMRAALQISQS-GQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQ   82 (330)
T ss_dssp             CEEEESCEEECCSHHHHHHHHHHHHT-TCCCEEECSSCGGGSGGGGCCSCEECCCCSSSCCCHHHHHHHHHHHHTSCSCH
T ss_pred             CcccCCEEEECcCHHHHHHHHHHHHc-CCeEEEEeCCCCCCCcHHHHhhhHheEcCCCCCCCHHHHHHHHHHhhhhccCH
Confidence            34579999999999999999999999 99999999987666543 2222110               00           


Q ss_pred             ----hhcc--chHHHHHHHhCCCccccCC--e-----------------EEEe-----chHHHHHHHHHHHHcCCCcEEE
Q 018414          140 ----MVVR--KPAHIFLDELGIDYDEQDN--Y-----------------VVIK-----HAALFTSTIMSKLLARPNVKLF  189 (356)
Q Consensus       140 ----~~~~--~~~~~~l~~~G~~~~~~~~--~-----------------~~~~-----~~~~~~~~l~~~~~~~~gv~i~  189 (356)
                          .+.+  ...++||+++|++|+...+  +                 ....     ....+...|.+++. +.+++++
T Consensus        83 ~~v~~l~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~g~~s~~~~~~~~~~~~~~~d~~G~~i~~~L~~~~~-~~~v~~~  161 (330)
T d1neka2          83 DAIEYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNL-KNHTTIF  161 (330)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCBCSCBTTBCCCSSBCEEECTTSSSEEEECCTTCHHHHHHHHHHHHHH-HTTCEEE
T ss_pred             HHHHHHHHHhHHHHHHHhhccccccccCCCceehhccCcccccccCcccccccccCCccHHHHHHHHHHHHH-hcCCeEE
Confidence                0001  1356889999999876421  1                 1111     13567778888876 6799999


Q ss_pred             cCeEEEEEEEe-CCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCCCCcc----------chhhhccCc-
Q 018414          190 NAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATG----------VKRLKSIGM-  257 (356)
Q Consensus       190 ~~~~v~~i~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~~~~~----------~~~~~~~g~-  257 (356)
                      .++.+.++..+ ++++.++...+      ..   +++...+.|+.||+|||+.+.+....          +......|. 
T Consensus       162 ~~~~~~~l~~~~~~~~~g~~~~~------~~---~g~~~~~~a~~vIlAtGG~~~ly~~ttn~~~~tGdG~~~a~~aGa~  232 (330)
T d1neka2         162 SEWYALDLVKNQDGAVVGCTALC------IE---TGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMAIRAGVP  232 (330)
T ss_dssp             CSEEEEEEEECTTSCEEEEEEEE------TT---TCCEEEEEESCEEECCCCCGGGSSSBSSCTTCSCHHHHHHHTTTCC
T ss_pred             EEEEEEEeeeeccccceeeeeEE------cc---CCcEEEEeccEEEEcCCCccccccCcCCCCccEeHHHHHHHHcCCC
Confidence            99999999874 56676665432      11   23567899999999999987544322          222222221 


Q ss_pred             ccccccccccccccccceee-ecccc-ccCceeEeceEEE-EecCCcccCC-ccceeeeehHHHHHHHHHHhC
Q 018414          258 IEEVPGMKALDMNSAEDAIV-RLTRE-VVPGMIVTGMEVA-EIDGAPRMGP-TFGAMMISGQKAAHLALKSLG  326 (356)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~-~~~~e-~~~g~~~~~~~~~-~~~g~~~~~~-~~g~~l~sG~~~~~l~l~~~~  326 (356)
                      ..-+.+..+.++.. ..+.+ ..+++ +++|+|..|.... -+.|.+|++. .+-+.+.+|..+.+.+.+.+.
T Consensus       233 l~d~~~~~~~~~~~-~~~~~~~~g~~~v~~gl~a~Ge~a~~g~HganrL~~nsl~~~~v~g~~ag~~~~~~~~  304 (330)
T d1neka2         233 VQDMMGGIPTKVTG-QALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQESIA  304 (330)
T ss_dssp             EESECCBEEBCTTC-EEEEECSSSCEEEEEEEEECSSSEECSSSTTSCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccc-ceeecccCCCceecccccccCcccccccccccccccccHHHHHHHHHHHHHHHHHHhh
Confidence            00111111211111 11111 12232 5788888876554 3667777765 334455677777777766553

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=1.1e-15  Score=140.17  Aligned_cols=147  Identities=27%  Similarity=0.395  Sum_probs=90.8

Q ss_pred             CCcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccc-cCCccc-------------hhh-------------
Q 018414           88 YADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW-LGGQLF-------------SAM-------------  140 (356)
Q Consensus        88 ~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~-~~g~~~-------------~~~-------------  140 (356)
                      .++|||||||+|+|||+||++|++. | +|+||||....||+++ .+|.+.             ...             
T Consensus         5 ~~~~DVvVVG~G~AGl~AA~~a~~~-g-~V~llEK~~~~gG~s~~a~Ggi~a~~~~~D~~~~~~~d~~~~~~~~~~~~~~   82 (305)
T d1chua2           5 EHSCDVLIIGSGAAGLSLALRLADQ-H-QVIVLSKGPVTEGSTFYAQGGIAAVFDETDSIDSHVEDTLIAGAGICDRHAV   82 (305)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHTTT-S-CEEEECSSCTTC-------------CCSHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred             cccCCEEEECccHHHHHHHHHhhcC-C-CEEEEECCCCCCCchHHhCcceEEEECCCCCHHHHHHHhhhcccCcccHHHH
Confidence            3469999999999999999999887 7 9999999987776543 222210             000             


Q ss_pred             --hcc--chHHHHHHHhCCCccccCC------eEE----------Eec-----hHHHHHHHHHHHHcCCCcEEEcCeEEE
Q 018414          141 --VVR--KPAHIFLDELGIDYDEQDN------YVV----------IKH-----AALFTSTIMSKLLARPNVKLFNAVAAE  195 (356)
Q Consensus       141 --~~~--~~~~~~l~~~G~~~~~~~~------~~~----------~~~-----~~~~~~~l~~~~~~~~gv~i~~~~~v~  195 (356)
                        +.+  ....+|+.+++++|+....      +..          ..+     ...+...++++..++.+++++.++.++
T Consensus        83 ~~~~~~~~e~~~~l~~~g~~f~~~~~~~~~~~~~~~~~gg~s~~r~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  162 (305)
T d1chua2          83 EFVASNARSCVQWLIDQGVLFDTHIQPNGEESYHLTREGGHSHRRILHAADATGREVETTLVSKALNHPNIRVLERTNAV  162 (305)
T ss_dssp             HHHHHHHHHHHHHHHHTTCC--------------------------------------CCCHHHHHHCTTEEEECSEEEE
T ss_pred             HHHHHhcchhhhHHHhcCCccccccccccccchhccccCCCccCeEEecCCCCCchhHHHHHHHHHhccCcceeceeEEE
Confidence              000  1346788889988754310      000          000     112223334455557899999999999


Q ss_pred             EEEEeCC-------eEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCCC
Q 018414          196 DLIVKGG-------RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFG  245 (356)
Q Consensus       196 ~i~~~~~-------~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~~  245 (356)
                      +++.+++       +|.|+...+      ..   ++....+.+|.||+|||+++...
T Consensus       163 ~Li~~~~~~~~~~~rv~Gv~~~~------~~---~g~~~~~~ak~VilAtGG~~~~~  210 (305)
T d1chua2         163 DLIVSDKIGLPGTRRVVGAWVWN------RN---KETVETCHAKAVVLATGGASKVY  210 (305)
T ss_dssp             EEEEGGGTTCCSSCBEEEEEEEE------TT---TTEEEEEECSEEEECCCCCGGGS
T ss_pred             EEEEEcCcccccCceEEEEEEEe------CC---CCcEEEEeecceEEeeeccccce
Confidence            9998764       688987742      11   12356789999999999987543

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.59  E-value=2.9e-15  Score=134.65  Aligned_cols=135  Identities=17%  Similarity=0.175  Sum_probs=86.7

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhh-c-----------------cchHHHHHH
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMV-V-----------------RKPAHIFLD  151 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~-~-----------------~~~~~~~l~  151 (356)
                      +|||+|||||++|+++|++|+++ |.+|+||||+...+|+++..+.+..... .                 .....+...
T Consensus         4 ~~DvvIIGaGi~Gls~A~~La~~-G~~V~vlE~~~~~~gaS~~~~G~l~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~   82 (276)
T d1ryia1           4 HYEAVVIGGGIIGSAIAYYLAKE-NKNTALFESGTMGGRTTSAAAGMLGAHAECEERDAFFDFAMHSQRLYKGLGEELYA   82 (276)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSTTTTHHHHCCCBCCGGGSCSSCSHHHHHHHHHHHHTTTHHHHHHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHC-CCcEEEEeCCCCCCCcccccccccccccccccccccchhhhhhhhhcccccccccc
Confidence            59999999999999999999999 9999999998755555543222111000 0                 000001111


Q ss_pred             HhCCC--ccccC----------------------------------------CeE---E-----EechHHHHHHHHHHHH
Q 018414          152 ELGID--YDEQD----------------------------------------NYV---V-----IKHAALFTSTIMSKLL  181 (356)
Q Consensus       152 ~~G~~--~~~~~----------------------------------------~~~---~-----~~~~~~~~~~l~~~~~  181 (356)
                      ..++.  +....                                        .+.   +     ..+...+...|.+.+.
T Consensus        83 ~~g~~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~~g~i~~~~~~~~l~~~~~  162 (276)
T d1ryia1          83 LSGVDIRQHNGGMFKLAFSEEDVLQLRQMDDLDSVSWYSKEEVLEKEPYASGDIFGASFIQDDVHVEPYFVCKAYVKAAK  162 (276)
T ss_dssp             HHCCCCCCBCCCEEEEESSHHHHHHHHTTTTSTTEEEEEHHHHHHHCTTSCTTCCEEEEETTCCBCCHHHHHHHHHHHHH
T ss_pred             ccccccccccccceeeeeecccccccccccccccccccccccccccCcccccceeEEEEeccceeeecccchhHHHHHHH
Confidence            11221  11000                                        000   0     1234667777777775


Q ss_pred             cCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          182 ARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       182 ~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                       +.|++|+++++|++|..++ ++++|.+.               ..+|+||.||+|+|+++
T Consensus       163 -~~Gv~i~~~~~V~~i~~~~-~~~~V~t~---------------~g~i~a~~vV~AaG~~s  206 (276)
T d1ryia1         163 -MLGAEIFEHTPVLHVERDG-EALFIKTP---------------SGDVWANHVVVASGVWS  206 (276)
T ss_dssp             -HTTCEEETTCCCCEEECSS-SSEEEEET---------------TEEEEEEEEEECCGGGT
T ss_pred             -HcCCEEecceEEEeEEeec-ceEEEecC---------------CeEEEcCEEEECCCccH
Confidence             6799999999999988654 45677764               25799999999999664

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.59  E-value=5.7e-15  Score=133.24  Aligned_cols=135  Identities=19%  Similarity=0.279  Sum_probs=88.2

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCc-cccCC-ccc----------hhhhc---------------
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG-AWLGG-QLF----------SAMVV---------------  142 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~-~~~~g-~~~----------~~~~~---------------  142 (356)
                      +|||||||||++|+++|++|+++ |++|+||||...++++ .+.++ .+.          ..+..               
T Consensus         3 ~yDvvIIGaGi~Gls~A~~La~~-G~~V~viE~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~e~~~   81 (281)
T d2gf3a1           3 HFDVIVVGAGSMGMAAGYQLAKQ-GVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGEGREYVPLALRSQELWYELEKETHH   81 (281)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSCSSCSSSSSCSSEEEECSSCTTCGGGHHHHHHHHHHHHHHHHHCSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHC-CCcEEEEeCCCCCCcccccCCCcceeecccCCcchhhhhcccccceeecchhhhhh
Confidence            69999999999999999999999 9999999998654322 11111 000          00000               


Q ss_pred             -------------c--c----hHHHHHHHhCCCcccc---------------CCeE-------EEechHHHHHHHHHHHH
Q 018414          143 -------------R--K----PAHIFLDELGIDYDEQ---------------DNYV-------VIKHAALFTSTIMSKLL  181 (356)
Q Consensus       143 -------------~--~----~~~~~l~~~G~~~~~~---------------~~~~-------~~~~~~~~~~~l~~~~~  181 (356)
                                   .  .    ...+.+..++.++...               ..+.       ...+...+...|.+.+.
T Consensus        82 ~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~e~~~~~p~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~a~  161 (281)
T d2gf3a1          82 KIFTKTGVLVFGPKGESAFVAETMEAAKEHSLTVDLLEGDEINKRWPGITVPENYNAIFEPNSGVLFSENCIRAYRELAE  161 (281)
T ss_dssp             CCEECCCEEEEEETTCCHHHHHHHHHHHHTTCCCEEEETHHHHHHSTTCCCCTTEEEEEETTCEEEEHHHHHHHHHHHHH
T ss_pred             ccccccceeeeeecchhhhhhhhhhhhccccchhhhhhhHhhhhhhhcccccccceeeeccccccccccccccccccccc
Confidence                         0  0    0112233344432110               0010       02345677888888776


Q ss_pred             cCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          182 ARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       182 ~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                       +.|++++++++|++|..+++++. |.++               ..+|+|+.||+|+|+++
T Consensus       162 -~~Gv~i~~~~~V~~i~~~~~~v~-V~t~---------------~g~i~a~~VViAaG~~s  205 (281)
T d2gf3a1         162 -ARGAKVLTHTRVEDFDISPDSVK-IETA---------------NGSYTADKLIVSMGAWN  205 (281)
T ss_dssp             -HTTCEEECSCCEEEEEECSSCEE-EEET---------------TEEEEEEEEEECCGGGH
T ss_pred             -cccccccCCcEEEEEEEECCEEE-EEEC---------------CcEEEcCEEEECCCCcc
Confidence             67999999999999999888763 5554               35799999999999553

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.55  E-value=2.3e-14  Score=130.75  Aligned_cols=135  Identities=27%  Similarity=0.353  Sum_probs=91.2

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccCC--CCCccccCCcc-ch----------------------------
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSVS--PGGGAWLGGQL-FS----------------------------  138 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~~--~Gg~~~~~g~~-~~----------------------------  138 (356)
                      .||||||||++|+++|++|+++ |. +|+||||+..  .+|+++....+ ..                            
T Consensus         2 ~dViIIGaGi~G~s~A~~La~~-G~~~V~liE~~~~~~~~gas~~~~G~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~   80 (305)
T d1pj5a2           2 PRIVIIGAGIVGTNLADELVTR-GWNNITVLDQGPLNMPGGSTSHAPGLVFQTNPSKTMASFAKYTVEKLLSLTEDGVSC   80 (305)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT-TCCCEEEECSSCTTCCCSGGGTCCCEECCCCSCHHHHHHHHHHHHHHHHCEETTEES
T ss_pred             CCEEEECcCHHHHHHHHHHHHc-CCCcEEEEeCCCCCCCccccccccceeccCCCCHHHHHHHHHHHHHHHhhhhccccc
Confidence            4999999999999999999999 85 6999999853  23444322111 00                            


Q ss_pred             --h---hhc-c-c-------hHHHHHHHhCCCcccc--------------CC--eE------EEechHHHHHHHHHHHHc
Q 018414          139 --A---MVV-R-K-------PAHIFLDELGIDYDEQ--------------DN--YV------VIKHAALFTSTIMSKLLA  182 (356)
Q Consensus       139 --~---~~~-~-~-------~~~~~l~~~G~~~~~~--------------~~--~~------~~~~~~~~~~~l~~~~~~  182 (356)
                        .   +.. . .       ...+.+...+.+++..              ..  ..      ...+...+...+.+.+. 
T Consensus        81 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~p~~l~~~l~~~a~-  159 (305)
T d1pj5a2          81 FNQVGGLEVATTETRLADLKRKLGYAAAWGIEGRLLSPAECQELYPLLDGENILGGLHVPSDGLASAARAVQLLIKRTE-  159 (305)
T ss_dssp             EECCCEEEEESSHHHHHHHHHHHHHHHHHTCCCEEECHHHHHHHCTTSCGGGCCEEEEETTCEEECHHHHHHHHHHHHH-
T ss_pred             ccccccccccchhhhHHHHHHHHHHHHhhcccccccchHHhhhhcccccccccccceecccccccchhhhhhhHHhhhh-
Confidence              0   000 0 0       0112333445433210              00  00      12356778888888876 


Q ss_pred             CCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          183 RPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       183 ~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      +.|++++++++|++|..+++++.+|.+.               ..+|+||.||+|+|.++
T Consensus       160 ~~gv~i~~~~~V~~i~~~~~~v~~V~T~---------------~g~i~a~~VV~aaG~~s  204 (305)
T d1pj5a2         160 SAGVTYRGSTTVTGIEQSGGRVTGVQTA---------------DGVIPADIVVSCAGFWG  204 (305)
T ss_dssp             HTTCEEECSCCEEEEEEETTEEEEEEET---------------TEEEECSEEEECCGGGH
T ss_pred             cccccccCCceEEEEEEeCCEEEEEecc---------------ceeEECCEEEEecchhH
Confidence            6799999999999999999999999875               35799999999999554

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.47  E-value=2e-13  Score=129.08  Aligned_cols=226  Identities=20%  Similarity=0.269  Sum_probs=131.1

Q ss_pred             cccEEEECCCHHHHHHHHHhhc------CCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccc----
Q 018414           90 DTDVVVVGAGSAGLSCAYELSK------NPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDE----  159 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~------~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~----  159 (356)
                      +||||||||||||++||+.|++      + |++|+||||+..+|...+.++.+....+..- ...+... +.....    
T Consensus        32 e~DViIVGgGPAGlsaA~~LA~l~~~~~~-Gl~VlllEK~~~pG~k~~~Ggvl~~~~l~~l-~p~~~~~-~~~~~~~~~~  108 (380)
T d2gmha1          32 EADVVIVGAGPAGLSAATRLKQLAAQHEK-DLRVCLVEKAAHIGAHTLSGACLDPRAFEEL-FPDWKEK-GAPLNTPVTE  108 (380)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTC-CCCEEEECSSSSTTTTCCCCCEECTHHHHHH-CTTHHHH-TCCCCEECCE
T ss_pred             cCCEEEECCCHHHHHHHHHHHhhhhhhcC-CCEEEEEcCCCCCCCCccccccccHHHHHHH-ccchhhh-ccccccceec
Confidence            6999999999999999999997      7 9999999999999877666654432211100 0011111 111000    


Q ss_pred             -------c---------------CCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeC-CeEEEEEEcceeeec
Q 018414          160 -------Q---------------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-GRVGGVVTNWALVSM  216 (356)
Q Consensus       160 -------~---------------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~-~~v~gv~~~~~~~~~  216 (356)
                             .               ...........+...+.+.+. ..++++..+..+.++..++ +.+.++...+.....
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ae-~~g~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~  187 (380)
T d2gmha1         109 DRFGILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAE-ALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQK  187 (380)
T ss_dssp             EEEEEECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHH-HTTCEEETTCCEEEEEECTTSSEEEEEECCEEECT
T ss_pred             ceEEEeeccccccccccCchhcccccceeehhhHHHHHHHHHHh-hccceeeeecceeeeeeccCCceeecccccccccc
Confidence                   0               000112234667777777775 6799999999999999865 455555543322111


Q ss_pred             ccCCCC-CCCCeEEEcCEEEEcCCCCCCCCCccchhhhccCcccccccccccccccccceeeeccccccCceeEeceEEE
Q 018414          217 NHDTQS-CMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVA  295 (356)
Q Consensus       217 ~~~~~~-~g~~~~i~Ak~VI~AtGg~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~~~~~~~  295 (356)
                      +...+. ......+.++..+++.|..+.++...+.......+..+..+...            +.+-..+|+.+.|..+.
T Consensus       188 ~~~~~~~~~~~~~~~~~~~v~~~G~~G~l~k~li~~~~l~~~~~~~~G~~s------------ip~l~~~G~lLVGDAAG  255 (380)
T d2gmha1         188 DGAPKTTFERGLELHAKVTIFAEGCHGHLAKQLYKKFDLRANCEPQGGFQS------------IPKLTFPGGLLIGCSPG  255 (380)
T ss_dssp             TSCEEEEEECCCEEECSEEEECCCTTCHHHHHHHHHTTTTTTSCCCCGGGG------------CCCCEETTEEECTTTTC
T ss_pred             cccccccccccccccccEEEEeeeCCCcchHHHHhhhhhcccccccccccc------------ccccccCCeeEEecccc
Confidence            111000 00123577899999999877544322222111111111111111            01112378888887777


Q ss_pred             EecCCcccCCccceeeeehHHHHHHHHHHhCCCCCCCC
Q 018414          296 EIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDG  333 (356)
Q Consensus       296 ~~~g~~~~~~~~g~~l~sG~~~~~l~l~~~~~~~~~~~  333 (356)
                      +++.....|..+  -|.||..+++.+.+.+...+..+.
T Consensus       256 ~vnP~~g~GI~~--Am~SG~lAAeai~~al~~~~~~~~  291 (380)
T d2gmha1         256 FMNVPKIKGTHT--AMKSGTLAAESIFNQLTSENLQSK  291 (380)
T ss_dssp             CCBTTTTBCHHH--HHHHHHHHHHHHHHHHTCCCCCCS
T ss_pred             ccchhhcCCeee--eeccHHHHHHHHHHHHHcCCcccc
Confidence            665543333322  358999999999999987664443

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=99.46  E-value=3.9e-13  Score=117.32  Aligned_cols=119  Identities=23%  Similarity=0.236  Sum_probs=80.0

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC-CCCCccccCC--ccchhhhccchHHHHHHHhCCCccccCCeEEE
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV-SPGGGAWLGG--QLFSAMVVRKPAHIFLDELGIDYDEQDNYVVI  166 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~-~~Gg~~~~~g--~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~  166 (356)
                      .|||||||||+||+.||+++++. |.||+||+++. .+|..+++..  ......+.        .+.+    ... .   
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~-G~ktllit~~~~~ig~~~cnp~~gg~~kg~l~--------reid----~kG-~---   64 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQK-GVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLE--------RAYD----PKD-E---   64 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHT-TCCEEEEESCGGGTTCCSSCCCSCCCTTCHHH--------HHCC----TTC-C---
T ss_pred             CCcEEEECcCHHHHHHHHHHHHC-CCcEEEEEeccchhcccccCCccccCCCccee--------eeee----ccc-h---
Confidence            49999999999999999999999 99999999863 3443333211  11111110        0110    000 0   


Q ss_pred             echHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414          167 KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       167 ~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~  241 (356)
                       ....+...+.+.+.+..|++++.. +|++++.+++++.+|.+.+              ..+|+|+.||+|||-+
T Consensus        65 -av~a~raQ~k~~l~~~~nL~i~q~-~V~dli~e~~~v~gV~t~~--------------G~~~~AkaVILtTGTF  123 (230)
T d2cula1          65 -RVWAFHARAKYLLEGLRPLHLFQA-TATGLLLEGNRVVGVRTWE--------------GPPARGEKVVLAVGSF  123 (230)
T ss_dssp             -CHHHHHHHHHHHHHTCTTEEEEEC-CEEEEEEETTEEEEEEETT--------------SCCEECSEEEECCTTC
T ss_pred             -hhhhHHHHHHHHHhhhcCHHHHhc-cceeeEecccceeeEEecc--------------ccEEEEeEEEEccCcc
Confidence             001122223344555779999877 7999999999999999863              4679999999999964

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.44  E-value=9.1e-13  Score=122.41  Aligned_cols=145  Identities=17%  Similarity=0.247  Sum_probs=90.4

Q ss_pred             CcccEEEECCCHHHHHHHHHhhc----CCCCeEEEEeccCCCCCccccCCcc-----------------chhh-------
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSK----NPNIQIAIIEQSVSPGGGAWLGGQL-----------------FSAM-------  140 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~----~~G~~V~llEk~~~~Gg~~~~~g~~-----------------~~~~-------  140 (356)
                      .++||||||+|++||+||++|++    + |++|+||||....|+++...|..                 +..+       
T Consensus        20 ~e~DVlIIG~G~AGl~AA~~aa~~~~~~-G~~V~vieK~~~~gg~s~~~g~~~~~~~~~~~~~~~~~Ds~e~~~~d~~~~   98 (356)
T d1jnra2          20 VETDILIIGGGFSGCGAAYEAAYWAKLG-GLKVTLVEKAAVERSGAVAQGLSAINTYIDLTGRSERQNTLEDYVRYVTLD   98 (356)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHTTT-TCCEEEECSSCTTTCSTTTTCEEEESCCCCSSSSBSCCCCHHHHHHHHHHH
T ss_pred             EecCEEEECCCHHHHHHHHHHHHHHHhC-cCEEEEEeCCCCCCChhHHHHHHHHHhccccccccCccCCHHHHHHHHHHh
Confidence            46999999999999999999975    5 99999999987766544321100                 0000       


Q ss_pred             --------h----c--cchHHHHHHHhCCCccccCC----------eEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEE
Q 018414          141 --------V----V--RKPAHIFLDELGIDYDEQDN----------YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAED  196 (356)
Q Consensus       141 --------~----~--~~~~~~~l~~~G~~~~~~~~----------~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~  196 (356)
                              +    .  .....+|+.++|++|.....          .................. ...+.+++..+.+++
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~  177 (356)
T d1jnra2          99 MMGLAREDLVADYARHVDGTVHLFEKWGLPIWKTPDGKYVREGQWQIMIHGESYKPIIAEAAKM-AVGEENIYERVFIFE  177 (356)
T ss_dssp             TTTCCCHHHHHHHHHHHHHHHHHHHHTTCCBCBCTTSCBCBSSSSCEEEEETTHHHHHHHHHHH-HHCGGGEECSEEEEE
T ss_pred             ccCCccHHHHHHHHHhcchhhhhHHhhCCCccccccccccccccceeccccccHHHHHHHHHHh-hhcceEEEEEEEEEE
Confidence                    0    0  01345788899998876522          111111222222222222 234677888888888


Q ss_pred             EEEe---CCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414          197 LIVK---GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF  244 (356)
Q Consensus       197 i~~~---~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~  244 (356)
                      +...   ++.+.++...+      ..   +|+...|+||.||+||||++..
T Consensus       178 l~~~~~~~~~v~~~~~~~------~~---~G~~~~i~Ak~VILATGG~~~~  219 (356)
T d1jnra2         178 LLKDNNDPNAVAGAVGFS------VR---EPKFYVFKAKAVILATGGATLL  219 (356)
T ss_dssp             EEECTTCTTBEEEEEEEE------SS---SSCEEEEECSEEEECCCCBCSS
T ss_pred             eeeecccccceeeeEEEE------ee---cCcEEEeeCCEEEEcCCCcccc
Confidence            8764   34666655421      11   2345789999999999998754

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.42  E-value=9e-13  Score=114.45  Aligned_cols=40  Identities=30%  Similarity=0.365  Sum_probs=37.9

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~  130 (356)
                      +|||||||||++|++||+.|+++ |++|+||||++.+||.+
T Consensus         5 ~yDviViGaG~~Gl~~A~~La~~-G~~V~vlE~~~~~GG~~   44 (297)
T d2bcgg1           5 DYDVIVLGTGITECILSGLLSVD-GKKVLHIDKQDHYGGEA   44 (297)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSCGGG
T ss_pred             cCCEEEECcCHHHHHHHHHHHHC-CCCEEEEcCCCCCCcce
Confidence            69999999999999999999999 99999999999998754

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.41  E-value=5.9e-14  Score=125.59  Aligned_cols=143  Identities=18%  Similarity=0.330  Sum_probs=80.6

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchH-H---HHHHHhCCCccccCCeEEE
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA-H---IFLDELGIDYDEQDNYVVI  166 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~-~---~~l~~~G~~~~~~~~~~~~  166 (356)
                      |||+|||||++|+.||.+|++. |++|+|||+. .+||+|.+.||++.+.+..... .   +....+|+.......|...
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~-G~~V~liE~~-~~GGtc~n~gciPsK~l~~~~~~~~~~~~~~~~G~~~~~~~~~~~~   79 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARH-NAKVALVEKS-RLGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNLPLL   79 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHT-TCCEEEEESS-STTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCHHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHHC-CCeEEEEecC-CCCCeEEeeCCcchHHHHhhhhcccchhccccccccchhhhhhhhH
Confidence            8999999999999999999999 9999999996 5899999999999888776533 2   2233466654332222211


Q ss_pred             e-chHHHH---HHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          167 K-HAALFT---STIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       167 ~-~~~~~~---~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      . +.....   ...++...++.|++++.+...  + .+...+. +.........+.   ...+..+++|+.||+|||+..
T Consensus        80 ~~~~~~~i~~~~~~~~~~l~~~gV~vi~G~a~--f-~~~~~v~-v~~~~~~~~~~~---~~~~~~~i~a~~iiIATGs~P  152 (259)
T d1onfa1          80 VERRDKYIQRLNNIYRQNLSKDKVDLYEGTAS--F-LSENRIL-IKGTKDNNNKDN---GPLNEEILEGRNILIAVGNKP  152 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEEESCCC--C-C------------------------------CBSSEEECCCCCB
T ss_pred             HhhhheeeeccccchhhhcccccceEEeeecc--c-ccccccc-cccceecccccc---CccceEEEeeeeEEEecCCCC
Confidence            1 111111   222333344679999887420  0 0111111 000000000000   001246799999999999754

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.35  E-value=1e-12  Score=118.69  Aligned_cols=137  Identities=20%  Similarity=0.170  Sum_probs=81.9

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCC---------ccc-
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID---------YDE-  159 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~---------~~~-  159 (356)
                      ++||+|||||++||++|+.|+++ |++|+||||.+..+......+     ........+.|+++|+.         ... 
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~~-G~~v~vlE~~~~~~~~~~~~~-----~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~   75 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHKA-GIDNVILERQTPDYVLGRIRA-----GVLEQGMVDLLREAGVDRRMARDGLVHEGV   75 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHH-TCCEEEECSSCHHHHHTCCCC-----CEECHHHHHHHHHTTCCHHHHHHCEEESCE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC-CCCEEEEeCCCCCCCCCCceE-----EEECHHHHHHHHHcCchHHHHhhcccccce
Confidence            57999999999999999999999 999999999853210000000     11122334455555442         110 


Q ss_pred             ----c-------------CCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEe-CCeEEEEEEcceeeecccCCC
Q 018414          160 ----Q-------------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQ  221 (356)
Q Consensus       160 ----~-------------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~-~~~v~gv~~~~~~~~~~~~~~  221 (356)
                          .             .......+...+.+.|++.+.+. +..+++....+..... ++.+. |....          
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-v~~~~----------  143 (292)
T d1k0ia1          76 EIAFAGQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREAC-GATTVYQAAEVRLHDLQGERPY-VTFER----------  143 (292)
T ss_dssp             EEEETTEEEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHT-TCEEESSCEEEEEECTTSSSCE-EEEEE----------
T ss_pred             EEEecccccccccccccccccceeecHHHHHHHHHHHHHhC-CCcEEEcceeeeeeeeccCceE-EEEec----------
Confidence                0             01112334466777888877644 4455555555555444 34433 33321          


Q ss_pred             CCCCCeEEEcCEEEEcCCCCCCCC
Q 018414          222 SCMDPNVMEAKVVVSSCGHDGPFG  245 (356)
Q Consensus       222 ~~g~~~~i~Ak~VI~AtGg~~~~~  245 (356)
                       +++..+++||+||.|+|.++...
T Consensus       144 -~g~~~~i~a~~vVgADG~~S~vR  166 (292)
T d1k0ia1         144 -DGERLRLDCDYIAGCDGFHGISR  166 (292)
T ss_dssp             -TTEEEEEECSEEEECCCTTCSTG
T ss_pred             -CCcEEEEEeCEEEECCCCCCccc
Confidence             12346789999999999887544

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.34  E-value=3.6e-13  Score=116.78  Aligned_cols=52  Identities=25%  Similarity=0.403  Sum_probs=45.8

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVV  142 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~  142 (356)
                      +|||+||||||+|+++|+.|++. |++|+|||+...+||.|.+.++.....+.
T Consensus         3 ~yDvvVIGgGpaGl~aA~~aa~~-G~kV~vie~~~~~GG~~~~~~~~~~~~~~   54 (221)
T d1dxla1           3 ENDVVIIGGGPGGYVAAIKAAQL-GFKTTCIEKRGALGGTCLNVGCIPSKALL   54 (221)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHH-TCCEEEEECSSSSCCSHHHHSHHHHHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHC-CCcEEEEEecCCCCCeeecchhhhhhhhh
Confidence            69999999999999999999999 99999999999899988777766655443

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.32  E-value=5.7e-13  Score=121.74  Aligned_cols=131  Identities=20%  Similarity=0.224  Sum_probs=83.0

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCC----ccc---hhhhccchHHHHHHHhCCCccccC
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGG----QLF---SAMVVRKPAHIFLDELGIDYDEQD  161 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g----~~~---~~~~~~~~~~~~l~~~G~~~~~~~  161 (356)
                      .++||+|||||++||++|++|.+. |.+|+|+||++.+||. |.-.    ...   ............+.....    ..
T Consensus         6 ~~~dV~IIGAG~sGl~~a~~L~~~-G~~v~i~Ek~~~iGGt-W~~n~ypg~~~d~~~~~~~~s~~~~~~~~~~~----~~   79 (298)
T d1w4xa1           6 EEVDVLVVGAGFSGLYALYRLREL-GRSVHVIETAGDVGGV-WYWNRYPGARCDIESIEYCYSFSEEVLQEWNW----TE   79 (298)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSCTH-HHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCC----CB
T ss_pred             CCCCEEEECccHHHHHHHHHHHhC-CCCEEEEEcCCCcccc-cccCCCCCceeccccccccccccccccCCCCC----cc
Confidence            468999999999999999999999 9999999999999874 4211    110   000000111111111111    01


Q ss_pred             CeEEEechHHHHHHHHHHHHcCCCc--EEEcCeEEEEEEEeCC-eEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcC
Q 018414          162 NYVVIKHAALFTSTIMSKLLARPNV--KLFNAVAAEDLIVKGG-RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSC  238 (356)
Q Consensus       162 ~~~~~~~~~~~~~~l~~~~~~~~gv--~i~~~~~v~~i~~~~~-~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~At  238 (356)
                      .+   ....++.+.|.+.+ ++.++  .|+++++|+++..+++ ....|.+.+              ..++++|.||.||
T Consensus        80 ~~---p~~~e~~~Yl~~~a-~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~--------------~~~~~~~~~i~at  141 (298)
T d1w4xa1          80 RY---ASQPEILRYINFVA-DKFDLRSGITFHTTVTAAAFDEATNTWTVDTNH--------------GDRIRARYLIMAS  141 (298)
T ss_dssp             SS---CBHHHHHHHHHHHH-HHTTGGGGEECSCCEEEEEEETTTTEEEEEETT--------------CCEEEEEEEEECC
T ss_pred             cc---CccchHHHHHHHHH-HHcCCcccccCCcEEEEEEEecCCCceeecccc--------------ccccccceEEEee
Confidence            11   12344554444333 35676  5899999999997643 344555542              4679999999999


Q ss_pred             CCCCC
Q 018414          239 GHDGP  243 (356)
Q Consensus       239 Gg~~~  243 (356)
                      |..+.
T Consensus       142 G~ls~  146 (298)
T d1w4xa1         142 GQLSD  146 (298)
T ss_dssp             CSCCC
T ss_pred             ccccc
Confidence            97664

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.31  E-value=2e-12  Score=115.50  Aligned_cols=38  Identities=34%  Similarity=0.571  Sum_probs=35.9

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~  130 (356)
                      ||+|||||++||+||++|+++ |++|+|+|+++.+||.+
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~-G~~V~vlE~~~~~GG~~   39 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSR-GTDAVLLESSARLGGAV   39 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTT-TCCEEEECSSSSSBTTC
T ss_pred             eEEEECCCHHHHHHHHHHHhC-CCCEEEEecCCCCCceE
Confidence            899999999999999999999 99999999999998754

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=2.6e-12  Score=117.85  Aligned_cols=39  Identities=33%  Similarity=0.626  Sum_probs=36.8

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccc
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW  131 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~  131 (356)
                      ||+|||||++||+||+.|+++ |++|+|||+...+||.++
T Consensus         1 DViVIGaG~aGL~aA~~L~~~-G~~V~VlE~~~~~GGr~~   39 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDS-GLNVVVLEARDRVGGRTY   39 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHT-TCCEEEEESSSSSBTTCC
T ss_pred             CEEEECCCHHHHHHHHHHHhC-CCCEEEEecCCCCcceee
Confidence            899999999999999999999 999999999999998654

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.28  E-value=4.1e-12  Score=115.52  Aligned_cols=40  Identities=48%  Similarity=0.741  Sum_probs=37.1

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~  130 (356)
                      ..+|+|||||++||+||+.|+++ |++|+|+|+.+.+||.+
T Consensus        30 pkkV~IIGaG~aGLsaA~~L~~~-G~~V~vlE~~~~~GG~~   69 (370)
T d2iida1          30 PKHVVIVGAGMAGLSAAYVLAGA-GHQVTVLEASERPGGRV   69 (370)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHH-TCEEEEECSSSSSBTTC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHC-CCCEEEEeCCCCCCCee
Confidence            45899999999999999999999 99999999999998754

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.28  E-value=1.7e-12  Score=112.38  Aligned_cols=53  Identities=21%  Similarity=0.295  Sum_probs=47.3

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRK  144 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~  144 (356)
                      +|||+|||||++|+++|+.|++. |++|+|||++ .+||+|.+.+|++.+.+...
T Consensus         2 ~yDvvVIG~G~aG~~aA~~a~~~-G~kV~iiE~~-~~GGtc~~~gc~p~k~l~~~   54 (217)
T d1gesa1           2 HYDYIAIGGGSGGIASINRAAMY-GQKCALIEAK-ELGGTCVNVGCVPKKVMWHA   54 (217)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTT-TCCEEEEESS-CTTHHHHHHSHHHHHHHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHC-CCEEEEEecc-CcCCeEecccccccccchhh
Confidence            69999999999999999999999 9999999996 58998888888887766554

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.26  E-value=8e-11  Score=104.56  Aligned_cols=134  Identities=22%  Similarity=0.276  Sum_probs=81.0

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCC---------cc--
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID---------YD--  158 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~---------~~--  158 (356)
                      .||+|||||++||++|+.|+++ |+ +|+|+||.+.++.... +      ........+.|+++++.         ..  
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~-Gi~~V~V~Er~~~~~~~g~-~------i~l~~~~~~~l~~~~~~~~~~~~~~~~~~~   73 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQA-GIGKVTLLESSSEIRPLGV-G------INIQPAAVEALAELGLGPALAATAIPTHEL   73 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESSSSCCCCSC-E------EEECHHHHHHHHHTTCHHHHHHHSEEECEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCCce-E------EEECHHHHHHHHHcCchhhhHhhhcccccc
Confidence            5999999999999999999999 96 9999999876643211 0      01112223333333331         10  


Q ss_pred             ----ccC---------------CeEEEechHHHHHHHHHHH-HcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeeccc
Q 018414          159 ----EQD---------------NYVVIKHAALFTSTIMSKL-LARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH  218 (356)
Q Consensus       159 ----~~~---------------~~~~~~~~~~~~~~l~~~~-~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~  218 (356)
                          ...               ..............+.... ....++.+.++++++.+..+++.+..... +      .
T Consensus        74 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~v~~~-~------g  146 (288)
T d3c96a1          74 RYIDQSGATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEERDGRVLIGAR-D------G  146 (288)
T ss_dssp             EEECTTSCEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEEETTEEEEEEE-E------T
T ss_pred             eeEcCCCCEEEeccccccccccCcccccchhhhHHHHHHHHHHhccCeeeecCcEEEEeeecCCcEEEEEE-c------C
Confidence                000               0111112222222222222 22458899999999999988887754332 2      1


Q ss_pred             CCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          219 DTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       219 ~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                          +++..++.+|+||.|+|.++.
T Consensus       147 ----~~~~~~~~ad~vi~ADG~~S~  167 (288)
T d3c96a1         147 ----HGKPQALGADVLVGADGIHSA  167 (288)
T ss_dssp             ----TSCEEEEEESEEEECCCTTCH
T ss_pred             ----CCCeEEEeeceeeccCCccce
Confidence                123468999999999997663

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.23  E-value=3.7e-11  Score=103.74  Aligned_cols=133  Identities=20%  Similarity=0.244  Sum_probs=80.3

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEec-
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKH-  168 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~-  168 (356)
                      +||||||||||+|++||..|++. |++|+|||+. .+||.|.+.++.+...+..........+..-.+........+.. 
T Consensus         3 ~~DviVIG~GpaGl~aA~~aar~-G~kV~vIEk~-~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (223)
T d1ebda1           3 ETETLVVGAGPGGYVAAIRAAQL-GQKVTIVEKG-NLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDFA   80 (223)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHT-TCCEEEEESS-CTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHC-CCEEEEEecC-CCCcceeccccccccccccccchhhhhhhhhhhcccchhheeeHH
Confidence            59999999999999999999999 9999999997 57888877777766655444333333222222211111111111 


Q ss_pred             -----hHHHH---HHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCC
Q 018414          169 -----AALFT---STIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGH  240 (356)
Q Consensus       169 -----~~~~~---~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg  240 (356)
                           ...+.   ...++.+.+..+++++.+..   ....+.... +....             ....+.++.+|+|+|.
T Consensus        81 ~~~~~~~~~v~~l~~~~~~~~~~~~V~~i~G~a---~f~~~~~~~-v~~~~-------------~~~~~~~~~iiIa~g~  143 (223)
T d1ebda1          81 KVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEA---YFVDANTVR-VVNGD-------------SAQTYTFKNAIIATGS  143 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTTCEEEESEE---EEEETTEEE-EEETT-------------EEEEEECSEEEECCCE
T ss_pred             HHhhHHHHHHHHHHhhHHHhhhccceeeeccEE---EEccCcccc-eeccc-------------cceEEecccEEEEcCC
Confidence                 11111   12233344577999988742   122333222 22211             2467999999999984


Q ss_pred             C
Q 018414          241 D  241 (356)
Q Consensus       241 ~  241 (356)
                      .
T Consensus       144 ~  144 (223)
T d1ebda1         144 R  144 (223)
T ss_dssp             E
T ss_pred             C
Confidence            3

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.19  E-value=2.8e-11  Score=105.69  Aligned_cols=136  Identities=16%  Similarity=0.176  Sum_probs=80.2

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCC--------CCCccccCCccchhhhccchHH----HHHHHhCCCc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS--------PGGGAWLGGQLFSAMVVRKPAH----IFLDELGIDY  157 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~--------~Gg~~~~~g~~~~~~~~~~~~~----~~l~~~G~~~  157 (356)
                      +|||+||||||+|++||++|++. |++|+|||+...        .||.|.+.++++.+.+......    .....+|+.+
T Consensus         3 dYDviVIG~GpaGl~aA~~aa~~-G~kV~viE~~~~~~~~~~~~~GG~c~~~g~~~~k~l~~~~~~~~~~~~~~~~gi~~   81 (235)
T d1h6va1           3 DFDLIIIGGGSGGLAAAKEAAKF-DKKVMVLDFVTPTPLGTNWGLGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWKL   81 (235)
T ss_dssp             SEEEEEECCSHHHHHHHHHHGGG-CCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTTTTBCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCCCCcccccccccccccccccchhhhhhhhhhhhHhhhhhcccccc
Confidence            59999999999999999999999 999999998653        3555666667766665443221    1122345444


Q ss_pred             cccCC--eEE-EechHHHHH---HHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEc
Q 018414          158 DEQDN--YVV-IKHAALFTS---TIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEA  231 (356)
Q Consensus       158 ~~~~~--~~~-~~~~~~~~~---~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A  231 (356)
                      .....  +.. ..+......   .-++.+.++.+|+++.+...   ....+.+. +...            .++...+.+
T Consensus        82 ~~~~~~d~~~~~~~~~~~i~~l~~g~~~~l~~~~V~vi~G~~~---~~~~~~~~-v~~~------------~~~~~~i~a  145 (235)
T d1h6va1          82 EDTVKHDWEKMTESVQNHIGSLNWGYRVALREKKVVYENAYGK---FIGPHKIM-ATNN------------KGKEKVYSA  145 (235)
T ss_dssp             CSCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEECCEEE---EEETTEEE-EECT------------TSCEEEEEE
T ss_pred             ccceeechhhhhheeeeeeeeccchhhhhhhccCceEEEeEEe---ecccccee-cccc------------ccccccccc
Confidence            33211  110 111111111   11223334568999887532   22333322 2221            123567999


Q ss_pred             CEEEEcCCCCC
Q 018414          232 KVVVSSCGHDG  242 (356)
Q Consensus       232 k~VI~AtGg~~  242 (356)
                      +.+++++|...
T Consensus       146 ~~ivi~~G~~p  156 (235)
T d1h6va1         146 ERFLIATGERP  156 (235)
T ss_dssp             EEEEECCCEEE
T ss_pred             ccceeecCCCc
Confidence            99999999553

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.18  E-value=1.2e-10  Score=107.25  Aligned_cols=138  Identities=17%  Similarity=0.131  Sum_probs=82.2

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCC--CeEEEEeccCCCCCccccC----Cccch------------------------hhh
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPN--IQIAIIEQSVSPGGGAWLG----GQLFS------------------------AMV  141 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G--~~V~llEk~~~~Gg~~~~~----g~~~~------------------------~~~  141 (356)
                      .|+|||||++||++|+.|.+. +  .+|+|+||+..+||. |.-    +....                        .+.
T Consensus         6 rVaIIGaG~sGl~~A~~L~~~-~~~~~v~vfEk~~~iGG~-W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~y   83 (335)
T d2gv8a1           6 KIAIIGAGPSGLVTAKALLAE-KAFDQVTLFERRGSPGGV-WNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPLY   83 (335)
T ss_dssp             EEEEECCSHHHHHHHHHHHTT-TCCSEEEEECSSSSSSTT-CSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCCC
T ss_pred             eEEEECcCHHHHHHHHHHHHh-CCCCCEEEEECCCCCCCc-ccccCCCCcccCCcccccccccccccccccccccccccc
Confidence            699999999999999999876 4  699999999998864 321    10000                        000


Q ss_pred             --ccchHHHHHHHh-CCCccccCCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeeccc
Q 018414          142 --VRKPAHIFLDEL-GIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH  218 (356)
Q Consensus       142 --~~~~~~~~l~~~-G~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~  218 (356)
                        ........+..+ ...+..  ..+.+.+...+.+.|...+ +..+..++++++|+++..+++++.. .+.+      .
T Consensus        84 ~~l~~~~~~~~~~~~~~~~~~--~~~~f~~~~~~~~yl~~~~-~~~~~~I~~~t~V~~v~~~~~~w~V-t~~~------~  153 (335)
T d2gv8a1          84 RDLQTNTPIELMGYCDQSFKP--QTLQFPHRHTIQEYQRIYA-QPLLPFIKLATDVLDIEKKDGSWVV-TYKG------T  153 (335)
T ss_dssp             TTCBCSSCHHHHSCTTCCCCT--TCCSSCBHHHHHHHHHHHH-GGGGGGEECSEEEEEEEEETTEEEE-EEEE------S
T ss_pred             hhhhcCCcHhhhhhhhhcCCc--ccccCCchHHHHHHHHHHH-HHhhhcccCceEEEEEEecCCEEEE-EEEe------c
Confidence              000001111111 111111  1111234455655554444 3567789999999999999887653 3321      1


Q ss_pred             CCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414          219 DTQSCMDPNVMEAKVVVSSCGHDGP  243 (356)
Q Consensus       219 ~~~~~g~~~~i~Ak~VI~AtGg~~~  243 (356)
                      +++  .+.....+|.||+|||.++.
T Consensus       154 ~~~--~~~~~~~~d~VI~AtG~~s~  176 (335)
T d2gv8a1         154 KAG--SPISKDIFDAVSICNGHYEV  176 (335)
T ss_dssp             STT--CCEEEEEESEEEECCCSSSS
T ss_pred             CCC--CeEEEEEeeEEEEccccccc
Confidence            111  12346779999999998874

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=99.17  E-value=5.4e-11  Score=105.13  Aligned_cols=127  Identities=20%  Similarity=0.227  Sum_probs=82.7

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCcccc----CCeEE-
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQ----DNYVV-  165 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~----~~~~~-  165 (356)
                      .+|+|||||++||++|+.|+++ |++|+|+||...++.... .+     ........+.++++|+.....    ..+.. 
T Consensus         5 ~kV~IiGaG~aGl~~A~~L~~~-G~~v~v~Er~~~~~~~~~-~g-----~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~   77 (265)
T d2voua1           5 DRIAVVGGSISGLTAALMLRDA-GVDVDVYERSPQPLSGFG-TG-----IVVQPELVHYLLEQGVELDSISVPSSSMEYV   77 (265)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSSCCCCS-CE-----EECCHHHHHHHHHTTCCGGGTCBCCCEEEEE
T ss_pred             CcEEEECcCHHHHHHHHHHHHC-CCCEEEEeCCCCCCCCCc-eE-----EEECccHHHHHHHcCcchhhhccCCCcceeE
Confidence            5799999999999999999999 999999999866543211 11     112334556777777754321    00100 


Q ss_pred             ----------------EechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEE
Q 018414          166 ----------------IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVM  229 (356)
Q Consensus       166 ----------------~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i  229 (356)
                                      ..........+.   ....++.++++++++++..+++.+. +...              ++.++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~v~-v~~~--------------dG~~~  139 (265)
T d2voua1          78 DALTGERVGSVPADWRFTSYDSIYGGLY---ELFGPERYHTSKCLVGLSQDSETVQ-MRFS--------------DGTKA  139 (265)
T ss_dssp             ETTTCCEEEEEECCCCEEEHHHHHHHHH---HHHCSTTEETTCCEEEEEECSSCEE-EEET--------------TSCEE
T ss_pred             eccCCceecccccccccchhHHHHHHHH---HhcccceeecCcEEEEEEeeCCceE-EEEC--------------CCCEE
Confidence                            001122222222   2245788999999999988776553 3333              24679


Q ss_pred             EcCEEEEcCCCCC
Q 018414          230 EAKVVVSSCGHDG  242 (356)
Q Consensus       230 ~Ak~VI~AtGg~~  242 (356)
                      +++++|.|+|..+
T Consensus       140 ~~d~~v~adG~~s  152 (265)
T d2voua1         140 EANWVIGADGGAS  152 (265)
T ss_dssp             EESEEEECCCTTC
T ss_pred             EEEEEeccccccc
Confidence            9999999999665

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.14  E-value=1.2e-11  Score=110.25  Aligned_cols=67  Identities=13%  Similarity=0.094  Sum_probs=55.4

Q ss_pred             CCcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccch-HHHHHHHhCC
Q 018414           88 YADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKP-AHIFLDELGI  155 (356)
Q Consensus        88 ~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~-~~~~l~~~G~  155 (356)
                      .++||+||||||++|+.+|+.|++. |.+|++||+...+||.|.+.||++.+.+.... ....+..++.
T Consensus        40 ~k~yDvvVIGgG~aG~~aA~~~a~~-G~kv~vve~~~~lGG~c~n~GcvP~k~l~~~a~~~~~~~~~~~  107 (261)
T d1mo9a1          40 PREYDAIFIGGGAAGRFGSAYLRAM-GGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSG  107 (261)
T ss_dssp             CSCBSEEEECCSHHHHHHHHHHHHT-TCCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCccccccccccccchHHHHhhHHhHHHHHHhhh
Confidence            4589999999999999999999999 99999999999999999999998877765543 3344444443

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.14  E-value=3.7e-11  Score=107.07  Aligned_cols=38  Identities=34%  Similarity=0.663  Sum_probs=35.9

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~  130 (356)
                      .|+|||||++||+||++|+++ |++|+|||+++.+||.+
T Consensus         3 kV~IIGaG~aGL~aA~~La~~-G~~V~vlE~~~~~GG~~   40 (373)
T d1seza1           3 RVAVIGAGVSGLAAAYKLKIH-GLNVTVFEAEGKAGGKL   40 (373)
T ss_dssp             EEEEECCSHHHHHHHHHHHTT-SCEEEEECSSSSSCSSC
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCCEEEEeCCCCCcCce
Confidence            599999999999999999999 99999999999999854

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=99.13  E-value=1.1e-10  Score=110.03  Aligned_cols=35  Identities=37%  Similarity=0.692  Sum_probs=32.5

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .||+||||+|.+|+.+|.+|+++++++|+|||++.
T Consensus        17 tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~   51 (385)
T d1cf3a1          17 TVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   51 (385)
T ss_dssp             EEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSC
T ss_pred             eEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCC
Confidence            59999999999999999999998468999999985

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.12  E-value=2.3e-11  Score=105.83  Aligned_cols=54  Identities=26%  Similarity=0.375  Sum_probs=46.9

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhcc
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVR  143 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~  143 (356)
                      ++|||+||||||||++||++|++. |++|+|||+.+..||.+.+.++++...+..
T Consensus         4 ~~yDviVIG~GpAGl~aA~~aa~~-G~kV~lie~~~~~GG~~~~~g~~p~~~~~~   57 (233)
T d1v59a1           4 KSHDVVIIGGGPAGYVAAIKAAQL-GFNTACVEKRGKLGGTCLNVGCIPSKALLN   57 (233)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSSSSSHHHHHHSHHHHHHHHH
T ss_pred             cccCEEEECCCHHHHHHHHHHHHC-CCcEEEEEecCCcceEeEEeeccccccccc
Confidence            369999999999999999999999 999999999988898887777776655443

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.12  E-value=3.1e-10  Score=88.47  Aligned_cols=95  Identities=13%  Similarity=0.128  Sum_probs=72.1

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.++|||||+.|+.+|..|++. |.+|+|+|+.+.+...                                      ...
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~-G~~Vtlve~~~~~l~~--------------------------------------~d~   62 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGL-GAKTHLFEMFDAPLPS--------------------------------------FDP   62 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSSSTT--------------------------------------SCH
T ss_pred             CEEEEECCChhhHHHHHHhhcc-ccEEEEEeecchhhhh--------------------------------------cch
Confidence            3699999999999999999999 9999999998753210                                      013


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG  239 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtG  239 (356)
                      ++.+.+.+.+. +.|+++++++.++++..+++....+...+              +.++.+|.||+|+|
T Consensus        63 ~~~~~~~~~l~-~~GV~~~~~~~v~~i~~~~~~~~~v~~~~--------------g~~~~~D~vi~a~G  116 (116)
T d1gesa2          63 MISETLVEVMN-AEGPQLHTNAIPKAVVKNTDGSLTLELED--------------GRSETVDCLIWAIG  116 (116)
T ss_dssp             HHHHHHHHHHH-HHSCEEECSCCEEEEEECTTSCEEEEETT--------------SCEEEESEEEECSC
T ss_pred             hhHHHHHHHHH-HCCCEEEeCCEEEEEEEcCCcEEEEEECC--------------CCEEEcCEEEEecC
Confidence            34455555555 56999999999999987754333355542              46799999999998

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=99.11  E-value=4.9e-11  Score=100.29  Aligned_cols=76  Identities=21%  Similarity=0.185  Sum_probs=54.7

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~  169 (356)
                      ..+|+|||||||||+||+.|+++ |++|+|+|+.+.+||.......                   ++.        ....
T Consensus        43 ~k~V~IIGaGPAGL~AA~~la~~-G~~Vtl~E~~~~~GG~l~~~~~-------------------~p~--------~~~~   94 (179)
T d1ps9a3          43 KKNLAVVGAGPAGLAFAINAAAR-GHQVTLFDAHSEIGGQFNIAKQ-------------------IPG--------KEEF   94 (179)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTT-TCEEEEEESSSSSCTTHHHHTT-------------------STT--------CTTH
T ss_pred             CcEEEEECccHHHHHHHHHHHhh-ccceEEEeccCccCceEEEEEe-------------------Ccc--------cchH
Confidence            36899999999999999999999 9999999999988874321100                   010        0122


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCeEE
Q 018414          170 ALFTSTIMSKLLARPNVKLFNAVAA  194 (356)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v  194 (356)
                      .++.+.+.+.+. +.|+++++++.|
T Consensus        95 ~~~~~~~~~~~~-~~gV~i~l~~~V  118 (179)
T d1ps9a3          95 YETLRYYRRMIE-VTGVTLKLNHTV  118 (179)
T ss_dssp             HHHHHHHHHHHH-HHTCEEEESCCC
T ss_pred             HHHHHHHHHhhh-cCCeEEEeCCEE
Confidence            445556666665 569999998755

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.11  E-value=8.2e-11  Score=101.82  Aligned_cols=54  Identities=20%  Similarity=0.351  Sum_probs=48.0

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccc
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRK  144 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~  144 (356)
                      .+||+||||||++|+.+|+.+++. |.+|+|||++ .+||.|.+.+|++.+.+...
T Consensus         4 ~~~DlvVIG~GpaGl~aA~~aa~~-G~~V~liE~~-~~GG~c~~~gc~p~k~~~~~   57 (220)
T d1lvla1           4 IQTTLLIIGGGPGGYVAAIRAGQL-GIPTVLVEGQ-ALGGTCLNIGCIPSKALIHV   57 (220)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHH-TCCEEEECSS-CTTHHHHHHSHHHHHHHHHH
T ss_pred             cccCEEEECCCHHHHHHHHHHHHC-CCcEEEEecC-CCCCcccccccccchhhhhh
Confidence            369999999999999999999999 9999999997 58999888888887766554

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=99.11  E-value=1.3e-10  Score=108.40  Aligned_cols=36  Identities=25%  Similarity=0.389  Sum_probs=33.3

Q ss_pred             CCcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           88 YADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        88 ~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      -.++||||||+|++|+.+|++|+++ |++|+|||++.
T Consensus         5 ~~~~dvIVVGsG~aG~v~A~rLaea-G~~VlvLEaG~   40 (370)
T d3coxa1           5 GDRVPALVIGSGYGGAVAALRLTQA-GIPTQIVEMGR   40 (370)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCC
Confidence            3479999999999999999999999 99999999863

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=99.09  E-value=8.8e-11  Score=109.63  Aligned_cols=34  Identities=29%  Similarity=0.509  Sum_probs=32.2

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .||+||||+|.+|+.+|.+|++. |++|+|||++.
T Consensus         2 ~YD~IIVGsG~aG~v~A~rLae~-g~~VlvLEaG~   35 (360)
T d1kdga1           2 PYDYIIVGAGPGGIIAADRLSEA-GKKVLLLERGG   35 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSC
T ss_pred             cCCEEEECcCHHHHHHHHHHhhC-CCeEEEEEccC
Confidence            49999999999999999999999 99999999983

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=9.5e-11  Score=101.17  Aligned_cols=53  Identities=25%  Similarity=0.345  Sum_probs=46.3

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRK  144 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~  144 (356)
                      +|||||||||++|+++|..|++. |++|+|||+. ..||.|.+.++.+.+.+...
T Consensus         3 ~yDviIIG~GpaG~~aA~~aar~-G~kV~vIEk~-~~GG~c~n~g~~~~k~l~~~   55 (221)
T d3grsa1           3 SYDYLVIGGGSGGLASARRAAEL-GARAAVVESH-KLGGTCVNVGCVPKKVMWNT   55 (221)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHT-TCCEEEEESS-CTTHHHHHHSHHHHHHHHHH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHC-CCEEEEEecc-CCCCccccchhhhhhhhhhH
Confidence            59999999999999999999999 9999999996 57888888888777666544

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.08  E-value=8.9e-11  Score=101.34  Aligned_cols=40  Identities=30%  Similarity=0.485  Sum_probs=35.4

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG  129 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~  129 (356)
                      ++|||+||||||||++||+.|++. |++|+|||+....++.
T Consensus         2 ~kYDviIIGgGpAGl~aA~~aar~-G~~V~viE~~~~~~~~   41 (229)
T d3lada1           2 QKFDVIVIGAGPGGYVAAIKSAQL-GLKTALIEKYKGKEGK   41 (229)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHH-TCCEEEEECCBCTTSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHC-CCeEEEEecccCCCcc
Confidence            369999999999999999999999 9999999997654433

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.06  E-value=1e-09  Score=87.68  Aligned_cols=96  Identities=17%  Similarity=0.220  Sum_probs=73.0

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.++|||||++|+.+|..|++. |.+|+|+|+.+.+-...                                     ...
T Consensus        36 k~v~VIGgG~iG~E~A~~l~~~-g~~Vtvie~~~~~l~~~-------------------------------------~~~   77 (133)
T d1q1ra2          36 NRLVVIGGGYIGLEVAATAIKA-NMHVTLLDTAARVLERV-------------------------------------TAP   77 (133)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSTTTTT-------------------------------------SCH
T ss_pred             CEEEEECCchHHHHHHHHHHhh-Ccceeeeeecccccccc-------------------------------------cch
Confidence            5799999999999999999999 99999999987542110                                     012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEe--CCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVK--GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG  239 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~--~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtG  239 (356)
                      .+.+.+.+.+. +.||++++++.++.+...  ++++..+.+.+              +.++.+|.||+|+|
T Consensus        78 ~~~~~~~~~~~-~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~--------------G~~i~~D~vi~a~G  133 (133)
T d1q1ra2          78 PVSAFYEHLHR-EAGVDIRTGTQVCGFEMSTDQQKVTAVLCED--------------GTRLPADLVIAGIG  133 (133)
T ss_dssp             HHHHHHHHHHH-HHTCEEECSCCEEEEEECTTTCCEEEEEETT--------------SCEEECSEEEECCC
T ss_pred             hhhhhhhhccc-ccccEEEeCCeEEEEEEeCCCceEEEEECCC--------------CCEEECCEEEEeeC
Confidence            23333344443 679999999999999875  45677777653              46799999999998

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.04  E-value=1.7e-09  Score=84.53  Aligned_cols=97  Identities=13%  Similarity=0.090  Sum_probs=73.1

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.++|||||..|+-.|..|++. |.+|+++|+...+-..                                      ...
T Consensus        23 ~~i~IiG~G~ig~E~A~~l~~~-G~~Vtiv~~~~~ll~~--------------------------------------~d~   63 (119)
T d3lada2          23 GKLGVIGAGVIGLELGSVWARL-GAEVTVLEAMDKFLPA--------------------------------------VDE   63 (119)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSSSSTT--------------------------------------SCH
T ss_pred             CeEEEECCChHHHHHHHHHHHc-CCceEEEEeecccCCc--------------------------------------ccc
Confidence            5799999999999999999999 9999999998653210                                      014


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG  239 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtG  239 (356)
                      ++.+.+.+.+. +.|++++++++++++..+++.+.. ...+      .     +...++.+|.||+|+|
T Consensus        64 ei~~~l~~~l~-~~Gv~i~~~~~v~~i~~~~~~v~v-~~~~------~-----~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          64 QVAKEAQKILT-KQGLKILLGARVTGTEVKNKQVTV-KFVD------A-----EGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             HHHHHHHHHHH-HTTEEEEETCEEEEEEECSSCEEE-EEES------S-----SEEEEEEESEEEECSC
T ss_pred             hhHHHHHHHHH-hcCceeecCcEEEEEEEeCCEEEE-EEEE------C-----CCCEEEECCEEEEeeC
Confidence            44555555555 679999999999999988776542 2221      0     1236799999999998

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.01  E-value=3.1e-10  Score=99.38  Aligned_cols=141  Identities=16%  Similarity=0.210  Sum_probs=81.4

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCC-CeEEEEeccCC--------CCCccccCCccchhhhccchH----HHHHHHhCC
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPN-IQIAIIEQSVS--------PGGGAWLGGQLFSAMVVRKPA----HIFLDELGI  155 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G-~~V~llEk~~~--------~Gg~~~~~g~~~~~~~~~~~~----~~~l~~~G~  155 (356)
                      ++|||||||+||||++||+.+++. | .+|+|+|+...        .||+|.+.+|++.+.+.....    .+.+..+|+
T Consensus         2 k~YDvvVIG~GpAG~~aAi~aa~~-g~k~V~vie~~~~~~~~~~~~iGGtc~~~gcip~K~l~~~a~~~~~~~~~~~~Gi   80 (240)
T d1feca1           2 RAYDLVVIGAGSGGLEAGWNAASL-HKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIRESAGFGW   80 (240)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHH-HCCCEEEEESCSSSBTTTBSCTTCHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTE
T ss_pred             CccCEEEECCCHHHHHHHHHHHHc-CCCEEEEEEEeccCCcccccccccccccccchhhhhccccccccccccccccccc
Confidence            469999999999999999999997 6 46999998753        577777788888777665432    223334565


Q ss_pred             CccccC---CeEEEe-chHH----HHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCe
Q 018414          156 DYDEQD---NYVVIK-HAAL----FTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPN  227 (356)
Q Consensus       156 ~~~~~~---~~~~~~-~~~~----~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~  227 (356)
                      ......   +|..+. +...    +...+...+.+..+++++.+.....   .+.... ....        .........
T Consensus        81 ~~~~~~v~~d~~~l~~~k~~~v~~~~~~~~~~l~~~~~v~i~~g~a~~~---~~~~~~-~~~~--------~~~~~~~~e  148 (240)
T d1feca1          81 ELDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGFGALQ---DNHTVL-VRES--------ADPNSAVLE  148 (240)
T ss_dssp             ECCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEESEEEEE---ETTEEE-EESS--------SSTTSCEEE
T ss_pred             cccccccccCHHHHHHHhhcEEeccccceeeeeccCCcEEEEEeecccc---cccccc-cccc--------ccccccceE
Confidence            443221   111111 1111    1122222344456788877743221   222111 1110        000112346


Q ss_pred             EEEcCEEEEcCCCCC
Q 018414          228 VMEAKVVVSSCGHDG  242 (356)
Q Consensus       228 ~i~Ak~VI~AtGg~~  242 (356)
                      .+.++.|++++|...
T Consensus       149 ~i~~~~i~ia~G~~p  163 (240)
T d1feca1         149 TLDTEYILLATGSWP  163 (240)
T ss_dssp             EEEEEEEEECCCEEE
T ss_pred             EEecceEEEecCCce
Confidence            799999999999543

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.01  E-value=3.3e-09  Score=82.52  Aligned_cols=95  Identities=16%  Similarity=0.228  Sum_probs=71.2

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -+++|||||+.|+.+|..|++. |.+|+|+|+.+.+...                                      ...
T Consensus        23 ~~v~IiGgG~ig~E~A~~l~~~-G~~Vtlve~~~~il~~--------------------------------------~d~   63 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAYANF-GTKVTILEGAGEILSG--------------------------------------FEK   63 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSSSSTT--------------------------------------SCH
T ss_pred             CeEEEECCCccceeeeeeeccc-ccEEEEEEecceeccc--------------------------------------ccc
Confidence            4799999999999999999999 9999999998754210                                      013


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEc
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSS  237 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~A  237 (356)
                      ++.+.+.+.+. +.|+++++++.++++..+++.+......            +++..++.+|.||+.
T Consensus        64 ~~~~~l~~~l~-~~GI~i~~~~~v~~i~~~~~~~~v~~~~------------~g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          64 QMAAIIKKRLK-KKGVEVVTNALAKGAEEREDGVTVTYEA------------NGETKTIDADYVLVT  117 (117)
T ss_dssp             HHHHHHHHHHH-HTTCEEEESEEEEEEEEETTEEEEEEEE------------TTEEEEEEESEEEEC
T ss_pred             hhHHHHHHHHH-hcCCEEEcCCEEEEEEEcCCEEEEEEEe------------CCCEEEEEeEEEEEC
Confidence            34455555555 5799999999999999887765433222            123467999999873

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.01  E-value=8.8e-11  Score=102.82  Aligned_cols=139  Identities=20%  Similarity=0.237  Sum_probs=77.5

Q ss_pred             ccEEEECCCHHHHHHHHHhhcC--CCCeEEEEeccCCCCCccccCCccchhhhccchH-HHHHH---HhCCCccccC---
Q 018414           91 TDVVVVGAGSAGLSCAYELSKN--PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA-HIFLD---ELGIDYDEQD---  161 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~--~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~-~~~l~---~~G~~~~~~~---  161 (356)
                      ++|+||||||+|++||+++++.  .+++|+|+|+. .+||.|.+.||++.+.+..... .+.++   .+|+.+...+   
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~-~~GG~cln~GciPsK~ll~~a~~~~~~~~~~~~G~~i~~~~~~~   80 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCD-GIGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDDAKI   80 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESS-CTTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC------CB
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecC-CCCceeecccccccEEEEeecchhhhhhhhhhcCCcccccCcee
Confidence            5899999999999999988763  15789999996 6899998889988876544322 22222   2344332111   


Q ss_pred             CeEEE-echHHHH----HHHHHHHHcCCCcEEEcCeEEEEEEEeC-CeEEEEEEcceeeecccCCCCCCCCeEEEcCEEE
Q 018414          162 NYVVI-KHAALFT----STIMSKLLARPNVKLFNAVAAEDLIVKG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVV  235 (356)
Q Consensus       162 ~~~~~-~~~~~~~----~~l~~~~~~~~gv~i~~~~~v~~i~~~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI  235 (356)
                      +|... .+...+.    ..+...+ +..+++++.+.... +.... .....+....          .+++..++++|.||
T Consensus        81 d~~~~~~~~~~v~~~~~~~~~~~~-~~~gV~vi~G~~~~-~~~~~~~~~~~v~v~~----------~dg~~~~i~ad~vi  148 (233)
T d1xdia1          81 SLPQIHARVKTLAAAQSADITAQL-LSMGVQVIAGRGEL-IDSTPGLARHRIKATA----------ADGSTSEHEADVVL  148 (233)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHH-HHTTCEEEESEEEE-CCSSSCCSSEEEEEEC----------TTSCEEEEEESEEE
T ss_pred             eeeeeccccceeeeeeecceehhh-cccceeEEECcccc-cccccccccceEEEEe----------cCCceeeeecceee
Confidence            11110 0111111    1222233 36799998874221 11000 0001112110          12345789999999


Q ss_pred             EcCCCCC
Q 018414          236 SSCGHDG  242 (356)
Q Consensus       236 ~AtGg~~  242 (356)
                      +|+|...
T Consensus       149 iAtG~~p  155 (233)
T d1xdia1         149 VATGASP  155 (233)
T ss_dssp             ECCCEEE
T ss_pred             eecCccc
Confidence            9999643

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.98  E-value=6.8e-10  Score=93.73  Aligned_cols=112  Identities=11%  Similarity=0.150  Sum_probs=72.8

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEec
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKH  168 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~  168 (356)
                      +++||+|||||++|+.||+.|++. |++|+|||+... ++.+.....+..                     ...++....
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~-g~~v~iie~~~~-~g~~~~~~~i~~---------------------~~~~~~~~~   60 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARA-NLQPVLITGMEK-GGQLTTTTEVEN---------------------WPGDPNDLT   60 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTT-TCCCEEECCSST-TGGGGGCSBCCC---------------------STTCCSSCB
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHc-CCceEEEEeecc-cccccccchhhh---------------------hhccccccc
Confidence            468999999999999999999999 999999998753 332221111100                     000111123


Q ss_pred             hHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414          169 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       169 ~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~  241 (356)
                      ..++.+.+...+. +.++++..+ .|+.+...++.. .+...               ...+.++.+|+++|..
T Consensus        61 ~~~~~~~~~~~~~-~~~~~~~~~-~V~~~~~~~~~~-~v~~~---------------~~~~~~~~viva~G~~  115 (190)
T d1trba1          61 GPLLMERMHEHAT-KFETEIIFD-HINKVDLQNRPF-RLNGD---------------NGEYTCDALIIATGAS  115 (190)
T ss_dssp             HHHHHHHHHHHHH-HTTCEEECC-CEEEEECSSSSE-EEEES---------------SCEEEEEEEEECCCEE
T ss_pred             hHHHHHHHHHHHH-hcCcEEecc-eeEEEecCCCcE-EEEEe---------------eeeEeeeeeeeeccee
Confidence            4556666565555 568888877 577776655432 23221               3678999999999953

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.98  E-value=1.4e-09  Score=84.49  Aligned_cols=94  Identities=20%  Similarity=0.202  Sum_probs=68.4

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.++|||||+.|+.+|..|++. |.+|+|+|+.+.+...                                      ...
T Consensus        22 ~~vvIiGgG~~G~E~A~~l~~~-g~~Vtlve~~~~il~~--------------------------------------~d~   62 (115)
T d1lvla2          22 QHLVVVGGGYIGLELGIAYRKL-GAQVSVVEARERILPT--------------------------------------YDS   62 (115)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHH-TCEEEEECSSSSSSTT--------------------------------------SCH
T ss_pred             CeEEEECCCHHHHHHHHHHhhc-ccceEEEeeecccccc--------------------------------------ccc
Confidence            4799999999999999999999 9999999998753210                                      013


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG  239 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtG  239 (356)
                      ++.+.+.+.+. +.|++++++++|+++.  ++..... ..            .++..++.+|.||+|+|
T Consensus        63 ~~~~~l~~~l~-~~gV~i~~~~~V~~i~--~~~~~~~-~~------------~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          63 ELTAPVAESLK-KLGIALHLGHSVEGYE--NGCLLAN-DG------------KGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             HHHHHHHHHHH-HHTCEEETTCEEEEEE--TTEEEEE-CS------------SSCCCEECCSCEEECCC
T ss_pred             hhHHHHHHHHH-hhcceEEcCcEEEEEc--CCeEEEE-Ec------------CCCeEEEEcCEEEEecC
Confidence            34445555554 5699999999998884  4432211 11            12346899999999998

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.96  E-value=4.2e-09  Score=82.52  Aligned_cols=91  Identities=20%  Similarity=0.275  Sum_probs=67.9

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      ..++|||||+.|+.+|..|++. |.+|+++|+.+.+-...                                     ...
T Consensus        31 ~~vvIIGgG~iG~E~A~~l~~~-g~~Vtli~~~~~~l~~~-------------------------------------~~~   72 (121)
T d1d7ya2          31 SRLLIVGGGVIGLELAATARTA-GVHVSLVETQPRLMSRA-------------------------------------APA   72 (121)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSSTTTTT-------------------------------------SCH
T ss_pred             CeEEEECcchhHHHHHHHhhcc-cceEEEEeecccccccc-------------------------------------CCH
Confidence            5799999999999999999999 99999999987532100                                     013


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG  239 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtG  239 (356)
                      .+.+.+.+.+. +.||+++++++++++.  ++.   +.+.              ++.++.+|.||+|+|
T Consensus        73 ~~~~~~~~~l~-~~GV~i~~~~~v~~~~--~~~---v~l~--------------dg~~i~~D~vi~a~G  121 (121)
T d1d7ya2          73 TLADFVARYHA-AQGVDLRFERSVTGSV--DGV---VLLD--------------DGTRIAADMVVVGIG  121 (121)
T ss_dssp             HHHHHHHHHHH-TTTCEEEESCCEEEEE--TTE---EEET--------------TSCEEECSEEEECSC
T ss_pred             HHHHHHHHHHH-HCCcEEEeCCEEEEEe--CCE---EEEC--------------CCCEEECCEEEEeeC
Confidence            33444445554 7799999999998763  443   3343              247899999999998

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.95  E-value=1.1e-08  Score=79.83  Aligned_cols=98  Identities=13%  Similarity=0.159  Sum_probs=71.9

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.|+|||||..|+-.|..|++. |.+|+++|+.+.+...                                      ...
T Consensus        23 ~~vvVvGgG~ig~E~A~~l~~~-g~~vt~i~~~~~~l~~--------------------------------------~d~   63 (121)
T d1mo9a2          23 STVVVVGGSKTAVEYGCFFNAT-GRRTVMLVRTEPLKLI--------------------------------------KDN   63 (121)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSCTTTTC--------------------------------------CSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhc-chhheEeeccchhhcc--------------------------------------ccc
Confidence            4799999999999999999999 9999999998643210                                      012


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeC-CeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG  239 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtG  239 (356)
                      .+...+.+.+. +.|++++++++++++..++ +.+..+....           .++..++.+|.||+|+|
T Consensus        64 ~~~~~~~~~l~-~~gI~v~~~~~v~~i~~~~~~~~~~~~~~~-----------~~~~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          64 ETRAYVLDRMK-EQGMEIISGSNVTRIEEDANGRVQAVVAMT-----------PNGEMRIETDFVFLGLG  121 (121)
T ss_dssp             HHHHHHHHHHH-HTTCEEESSCEEEEEEECTTSBEEEEEEEE-----------TTEEEEEECSCEEECCC
T ss_pred             chhhhhhhhhh-ccccEEEcCCEEEEEEecCCceEEEEEEEe-----------CCCCEEEEcCEEEEEEC
Confidence            33344444444 6799999999999999864 4554444321           11247899999999998

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.94  E-value=5.7e-09  Score=81.13  Aligned_cols=95  Identities=13%  Similarity=0.102  Sum_probs=70.8

Q ss_pred             ccEEEECCCHHHHHHHHHhh---cCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEe
Q 018414           91 TDVVVVGAGSAGLSCAYELS---KNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIK  167 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La---~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~  167 (356)
                      -.++|||||+.|+.+|..++   +. |.+|+++|+.+.+...                                      
T Consensus        19 ~~v~IiGgG~ig~E~A~~l~~~~~~-g~~Vtli~~~~~il~~--------------------------------------   59 (117)
T d1feca2          19 KRALCVGGGYISIEFAGIFNAYKAR-GGQVDLAYRGDMILRG--------------------------------------   59 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHSCT-TCEEEEEESSSSSSTT--------------------------------------
T ss_pred             CeEEEECCChHHHHHHHHhHhhccc-ccccceeccccccccc--------------------------------------
Confidence            47999999999999997544   45 8899999998653210                                      


Q ss_pred             chHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCC
Q 018414          168 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG  239 (356)
Q Consensus       168 ~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtG  239 (356)
                      ...++.+.+.+.+. +.|+++++++.++++..+++.+..+...+              +.++.+|.||+|+|
T Consensus        60 ~d~~~~~~~~~~l~-~~GI~v~~~~~v~~i~~~~~g~~~v~~~~--------------g~~i~~D~Vi~a~G  116 (117)
T d1feca2          60 FDSELRKQLTEQLR-ANGINVRTHENPAKVTKNADGTRHVVFES--------------GAEADYDVVMLAIG  116 (117)
T ss_dssp             SCHHHHHHHHHHHH-HTTEEEEETCCEEEEEECTTSCEEEEETT--------------SCEEEESEEEECSC
T ss_pred             ccchhhHHHHHHHh-hCcEEEEcCCEEEEEEECCCCEEEEEECC--------------CCEEEcCEEEEecC
Confidence            01334445555554 67999999999999988765555566642              46799999999999

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=7.9e-09  Score=82.70  Aligned_cols=95  Identities=17%  Similarity=0.247  Sum_probs=71.8

Q ss_pred             ccEEEECCCHHHHHHHHHhhc----CCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEE
Q 018414           91 TDVVVVGAGSAGLSCAYELSK----NPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVI  166 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~----~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~  166 (356)
                      -.++|||||++|+.+|..|++    . |.+|+++|+.+.+-...                                    
T Consensus        38 k~i~IvGgG~~G~E~A~~l~~~~~~~-g~~Vt~i~~~~~~l~~~------------------------------------   80 (137)
T d1m6ia2          38 KSITIIGGGFLGSELACALGRKARAL-GTEVIQLFPEKGNMGKI------------------------------------   80 (137)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHHHH-TCEEEEECSSSSTTTTT------------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHhc-CCEEEEecccccCCccc------------------------------------
Confidence            479999999999999998863    4 89999999986432100                                    


Q ss_pred             echHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCC
Q 018414          167 KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG  239 (356)
Q Consensus       167 ~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtG  239 (356)
                       ...++.+.+.+.+. +.|+++++++.|+++..+++.+. +.+.+              +.++.+|.||.|+|
T Consensus        81 -~~~~~~~~~~~~l~-~~GV~~~~~~~V~~i~~~~~~~~-v~l~~--------------G~~i~aD~Vi~A~G  136 (137)
T d1m6ia2          81 -LPEYLSNWTMEKVR-REGVKVMPNAIVQSVGVSSGKLL-IKLKD--------------GRKVETDHIVAAVG  136 (137)
T ss_dssp             -SCHHHHHHHHHHHH-TTTCEEECSCCEEEEEEETTEEE-EEETT--------------SCEEEESEEEECCC
T ss_pred             -CCHHHHHHHHHHHH-hCCcEEEeCCEEEEEEecCCEEE-EEECC--------------CCEEECCEEEEeec
Confidence             01334445555555 78999999999999988877664 55542              46899999999998

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.94  E-value=5.2e-09  Score=82.44  Aligned_cols=98  Identities=12%  Similarity=0.056  Sum_probs=74.4

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.++|||||..|+-+|..+++. |.+|+++|+.+.+-..                                      ...
T Consensus        27 ~~vvIiGgG~IG~E~A~~~~~~-G~~Vtive~~~~il~~--------------------------------------~d~   67 (125)
T d1ojta2          27 GKLLIIGGGIIGLEMGTVYSTL-GSRLDVVEMMDGLMQG--------------------------------------ADR   67 (125)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHH-TCEEEEECSSSSSSTT--------------------------------------SCH
T ss_pred             CeEEEECCCHHHHHHHHHhhcC-CCEEEEEEeecccccc--------------------------------------chh
Confidence            4799999999999999999999 9999999998643210                                      013


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG  239 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtG  239 (356)
                      ++.+.+.+.+. +.|++++.+++++++..+++.+. +.+..      .    ++...++++|.|++|+|
T Consensus        68 ~~~~~l~~~l~-~~gv~~~~~~~v~~v~~~~~g~~-v~~~~------~----~g~~~~i~~D~vl~A~G  124 (125)
T d1ojta2          68 DLVKVWQKQNE-YRFDNIMVNTKTVAVEPKEDGVY-VTFEG------A----NAPKEPQRYDAVLVAAG  124 (125)
T ss_dssp             HHHHHHHHHHG-GGEEEEECSCEEEEEEEETTEEE-EEEES------S----SCCSSCEEESCEEECCC
T ss_pred             hHHHHHHHHHH-HcCcccccCcEEEEEEEcCCcEE-EEEEe------C----CCCeEEEEcCEEEEecC
Confidence            44555555554 67999999999999998887654 33321      1    12346799999999999

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=98.93  E-value=1.1e-09  Score=101.55  Aligned_cols=33  Identities=24%  Similarity=0.399  Sum_probs=31.4

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .||||||+|++|+.+|++|+++ |++|+|||++.
T Consensus         3 v~VIVVGsG~aG~v~A~rLaea-G~~VlvLEaG~   35 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEA-GVQTLMLEMGQ   35 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSC
T ss_pred             CeEEEeCcCHHHHHHHHHHHHC-cCeEEEEecCC
Confidence            6999999999999999999999 99999999973

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=98.93  E-value=3.8e-10  Score=106.47  Aligned_cols=35  Identities=34%  Similarity=0.693  Sum_probs=32.3

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .||+||||+|.+|+.+|.+|++.++.+|+|||++.
T Consensus        24 tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~   58 (391)
T d1gpea1          24 TYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGF   58 (391)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSC
T ss_pred             eeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCC
Confidence            59999999999999999999998448999999985

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=98.92  E-value=1.2e-09  Score=101.12  Aligned_cols=35  Identities=31%  Similarity=0.488  Sum_probs=33.0

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .+|||||||+|++|+.+|.+|++. |+||+|||++.
T Consensus         3 ~~yDviIVGsG~aG~v~A~~La~~-G~kVlvLEaG~   37 (379)
T d2f5va1           3 IKYDVVIVGSGPIGCTYARELVGA-GYKVAMFDIGE   37 (379)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSC
T ss_pred             CcccEEEECcCHHHHHHHHHHhhC-CCeEEEEecCC
Confidence            369999999999999999999999 99999999974

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.92  E-value=9.6e-10  Score=93.11  Aligned_cols=117  Identities=16%  Similarity=0.179  Sum_probs=74.1

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEec
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKH  168 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~  168 (356)
                      +++||+|||||++|+.||+.|++. |++|+|+|+.......  .++.+.....               ......++....
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~-g~~v~vie~~~~~~~~--~~~~~~~~~~---------------~~~~~~~~~~~~   65 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARA-ELKPLLFEGWMANDIA--PGGQLTTTTD---------------VENFPGFPEGIL   65 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT-TCCCEEECCSSBTTBC--TTCGGGGCSE---------------ECCSTTCTTCEE
T ss_pred             ccceEEEECCCHHHHHHHHHHHHc-CCcEEEEEeecccccc--cccccccchh---------------hhcccccccccc
Confidence            469999999999999999999999 9999999987532210  0111110000               000011111123


Q ss_pred             hHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414          169 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       169 ~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~  241 (356)
                      ..++...+.+++. +.|+++..+ .|+.+...++. ..+.+               ....+.++.+++++|..
T Consensus        66 ~~el~~~~~~q~~-~~g~~i~~~-~V~~~~~~~~~-~~v~~---------------~~~~~~~~~~~~a~g~~  120 (192)
T d1vdca1          66 GVELTDKFRKQSE-RFGTTIFTE-TVTKVDFSSKP-FKLFT---------------DSKAILADAVILAIGAV  120 (192)
T ss_dssp             HHHHHHHHHHHHH-HTTCEEECC-CCCEEECSSSS-EEEEC---------------SSEEEEEEEEEECCCEE
T ss_pred             chHHHHHHHHHHH-hhcceeeee-eEEecccccCc-EEecc---------------cceeeeeeeEEEEeeee
Confidence            4667777777765 568999877 57777654432 22332               24678999999999953

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.92  E-value=1.4e-09  Score=95.08  Aligned_cols=38  Identities=29%  Similarity=0.491  Sum_probs=33.9

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG  128 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg  128 (356)
                      +.+|+|||||++||++|++|+++ |.+|+||||....++
T Consensus         6 ~~kVvVIGaGiaGl~~A~~L~~~-G~~V~vier~~~~~~   43 (268)
T d1c0pa1           6 QKRVVVLGSGVIGLSSALILARK-GYSVHILARDLPEDV   43 (268)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSCTTCT
T ss_pred             CCcEEEECccHHHHHHHHHHHHC-CCCEEEEeCCCCCCC
Confidence            46899999999999999999999 999999999864433

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=1.5e-08  Score=79.74  Aligned_cols=103  Identities=11%  Similarity=0.077  Sum_probs=71.1

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.++|||||..|+.+|..|++. |.+|+|+|+++.+-..                                      ...
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~-G~~Vtlv~~~~~~l~~--------------------------------------~d~   63 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSAL-GSKTSLMIRHDKVLRS--------------------------------------FDS   63 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSSCTT--------------------------------------SCH
T ss_pred             CEEEEEcCCccHHHHHHHHhcC-CcEEEEEeeccccccc--------------------------------------hhh
Confidence            3799999999999999999999 9999999998643110                                      013


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG  239 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtG  239 (356)
                      ++.+.+.+.+. +.|++++++++++++..+++.+.......      ...........+.+|.||+|+|
T Consensus        64 ~~~~~~~~~l~-~~Gv~i~~~~~v~~i~~~~~g~~v~~~~~------~~g~~~~~~~~~~~D~vl~a~G  125 (125)
T d3grsa2          64 MISTNCTEELE-NAGVEVLKFSQVKEVKKTLSGLEVSMVTA------VPGRLPVMTMIPDVDCLLWAIG  125 (125)
T ss_dssp             HHHHHHHHHHH-HTTCEEETTEEEEEEEEETTEEEEEEEEC------CTTSCCEEEEEEEESEEEECSC
T ss_pred             HHHHHHHHHHH-HCCCEEEeCCEEEEEEEcCCeEEEEEEEc------cCCcCcCccccccCCEEEEEeC
Confidence            34455555554 67999999999999998776533221110      0000000124578999999998

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.90  E-value=1.3e-08  Score=79.93  Aligned_cols=92  Identities=27%  Similarity=0.388  Sum_probs=68.5

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.|+|||||+.|+.+|..|++. |.+|+++|+.+.+-...                                     ...
T Consensus        31 k~vvViGgG~iG~E~A~~l~~~-g~~Vtlie~~~~~l~~~-------------------------------------~d~   72 (123)
T d1nhpa2          31 NNVVVIGSGYIGIEAAEAFAKA-GKKVTVIDILDRPLGVY-------------------------------------LDK   72 (123)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSSTTTTT-------------------------------------CCH
T ss_pred             CEEEEECChHHHHHHHHHhhcc-ceEEEEEEecCcccccc-------------------------------------cch
Confidence            4799999999999999999999 99999999986431100                                     013


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEc
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSS  237 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~A  237 (356)
                      ++.+.+.+.+. +.|+++++++.++++.. ++++..+..+               ..++.||.||+|
T Consensus        73 ~~~~~~~~~l~-~~gv~~~~~~~v~~i~~-~~~~~~v~~d---------------g~~i~~D~vi~a  122 (123)
T d1nhpa2          73 EFTDVLTEEME-ANNITIATGETVERYEG-DGRVQKVVTD---------------KNAYDADLVVVA  122 (123)
T ss_dssp             HHHHHHHHHHH-TTTEEEEESCCEEEEEC-SSBCCEEEES---------------SCEEECSEEEEC
T ss_pred             hhHHHHHHHhh-cCCeEEEeCceEEEEEc-CCCEEEEEeC---------------CCEEECCEEEEE
Confidence            33444444444 67999999999999875 4555555442               467999999987

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.88  E-value=3.5e-10  Score=98.39  Aligned_cols=54  Identities=30%  Similarity=0.500  Sum_probs=47.8

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRK  144 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~  144 (356)
                      +|||+||||||+||+||+.|++. |++|+|||+...+||.+.+.++++...+...
T Consensus         6 dyDviIIG~GPaGlsaA~~aa~~-G~~V~viE~~~~~GG~~~~~g~~~~~~~~~~   59 (229)
T d1ojta1           6 EYDVVVLGGGPGGYSAAFAAADE-GLKVAIVERYKTLGGVCLNVGCIPSKALLHN   59 (229)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSSCSSHHHHHHSHHHHHHHHHH
T ss_pred             ccCEEEECcCHHHHHHHHHHHHC-CCeEEEEeccCCCCCeeeccccchhhhhhhh
Confidence            69999999999999999999999 9999999999889998888887776655443

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.85  E-value=1.2e-08  Score=79.88  Aligned_cols=98  Identities=13%  Similarity=0.170  Sum_probs=71.3

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.++|||||+.|+.+|..|++. |.+|+|+|+.+.+-..                                      ...
T Consensus        24 ~~~vIiG~G~ig~E~A~~l~~l-G~~Vtii~~~~~~l~~--------------------------------------~d~   64 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVYSRL-GSKVTVVEFQPQIGAS--------------------------------------MDG   64 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSSSSS--------------------------------------SCH
T ss_pred             CeEEEECCCchHHHHHHHHHhh-CcceeEEEeccccchh--------------------------------------hhh
Confidence            4799999999999999999999 9999999998753210                                      014


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCe-EEEEEEcceeeecccCCCCCCCCeEEEcCEEEEc
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGR-VGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSS  237 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~-v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~A  237 (356)
                      ++.+.+.+.+. +.|++++++++++++..++++ ...+...+      ..   .++..++++|.|++|
T Consensus        65 ei~~~l~~~l~-~~GV~i~~~~~v~~v~~~~~~~~v~~~~~~------~~---~~~~~~ie~D~vlvA  122 (122)
T d1v59a2          65 EVAKATQKFLK-KQGLDFKLSTKVISAKRNDDKNVVEIVVED------TK---TNKQENLEAEVLLVA  122 (122)
T ss_dssp             HHHHHHHHHHH-HTTCEEECSEEEEEEEEETTTTEEEEEEEE------TT---TTEEEEEEESEEEEC
T ss_pred             hhHHHHHHHHH-hccceEEeCCEEEEEEEeCCCcEEEEEEEe------CC---CCCeEEEEeCEEEEC
Confidence            44555555555 579999999999999887543 33333322      11   123568999999987

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.84  E-value=5.7e-09  Score=86.98  Aligned_cols=110  Identities=17%  Similarity=0.248  Sum_probs=69.2

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      |||+|||||++|+.||+.|++. |++|+|||+.  +|+..........                     ....+ .....
T Consensus         2 yDViIIGgGpaGl~AAi~aar~-G~~v~iie~~--~gg~~~~~~~~~~---------------------~~~~~-~~~~~   56 (184)
T d1fl2a1           2 YDVLIVGSGPAGAAAAIYSARK-GIRTGLMGER--FGGQILDTVDIEN---------------------YISVP-KTEGQ   56 (184)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTT-TCCEEEECSS--TTGGGGGCCEECC---------------------BTTBS-SEEHH
T ss_pred             CcEEEECcCHHHHHHHHHHHHc-CCeEEEEEEe--cCCccccccccee---------------------ccccc-hhhhH
Confidence            8999999999999999999999 9999999975  4443321110000                     00000 01234


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCC--eEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGH  240 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~--~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg  240 (356)
                      .+...+...+. +.+.++.....+..+...+.  ........              +..++.++.+++++|.
T Consensus        57 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~g~  113 (184)
T d1fl2a1          57 KLAGALKVHVD-EYDVDVIDSQSASKLIPAAVEGGLHQIETA--------------SGAVLKARSIIVATGA  113 (184)
T ss_dssp             HHHHHHHHHHH-TSCEEEECSCCEEEEECCSSTTCCEEEEET--------------TSCEEEEEEEEECCCE
T ss_pred             HHHHHHHHHhh-heeceeeccceeeeecccccccceeeeeee--------------cceeeecccccccccc
Confidence            45555555554 66788888877777654321  22222221              2467889999999994

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.83  E-value=8.1e-09  Score=80.93  Aligned_cols=88  Identities=23%  Similarity=0.329  Sum_probs=66.3

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -+++|||||+.|+.+|..|++. |.+|+|+|+.+.+.+  +                                     ..
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~-g~~Vtlv~~~~~l~~--~-------------------------------------d~   72 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEA-GYHVKLIHRGAMFLG--L-------------------------------------DE   72 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHT-TCEEEEECSSSCCTT--C-------------------------------------CH
T ss_pred             CcEEEECCcHHHHHHHHHhhcc-cceEEEEeccccccC--C-------------------------------------CH
Confidence            4799999999999999999999 999999999864321  0                                     12


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG  239 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtG  239 (356)
                      ++.+.+.+.+. +.|++++++++++++.  ++.   +..+               ...+.+|.||+|+|
T Consensus        73 ~~~~~~~~~l~-~~GV~~~~~~~v~~~~--~~~---v~~~---------------~~~i~~D~vi~a~G  120 (122)
T d1xhca2          73 ELSNMIKDMLE-ETGVKFFLNSELLEAN--EEG---VLTN---------------SGFIEGKVKICAIG  120 (122)
T ss_dssp             HHHHHHHHHHH-HTTEEEECSCCEEEEC--SSE---EEET---------------TEEEECSCEEEECC
T ss_pred             HHHHHHHHHHH-HCCcEEEeCCEEEEEe--CCE---EEeC---------------CCEEECCEEEEEEE
Confidence            33344455554 5699999999998874  222   3332               46799999999999

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.82  E-value=1.3e-08  Score=79.79  Aligned_cols=97  Identities=20%  Similarity=0.221  Sum_probs=71.6

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.++|||||..|+.+|..+++. |.+|+|+|+++.+-..                                      ...
T Consensus        26 ~~~viiG~G~iglE~A~~~~~~-G~~Vtvi~~~~~~l~~--------------------------------------~d~   66 (123)
T d1dxla2          26 KKLVVIGAGYIGLEMGSVWGRI-GSEVTVVEFASEIVPT--------------------------------------MDA   66 (123)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHH-TCEEEEECSSSSSSTT--------------------------------------SCH
T ss_pred             CeEEEEccchHHHHHHHHHHhc-CCeEEEEEEccccCch--------------------------------------hhh
Confidence            4799999999999999999999 9999999998753210                                      013


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEE-EEEEcceeeecccCCCCCCCCeEEEcCEEEEcC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVG-GVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSC  238 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~-gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~At  238 (356)
                      ++...+.+.+. +.|+++++++.++++..+++.+. .+...           .+++..++.+|.|++|.
T Consensus        67 ~~~~~l~~~l~-~~GI~i~~~~~v~~i~~~~~~~~v~~~~~-----------~~g~~~~i~~D~vLvAA  123 (123)
T d1dxla2          67 EIRKQFQRSLE-KQGMKFKLKTKVVGVDTSGDGVKLTVEPS-----------AGGEQTIIEADVVLVSA  123 (123)
T ss_dssp             HHHHHHHHHHH-HSSCCEECSEEEEEEECSSSSEEEEEEES-----------SSCCCEEEEESEEECCC
T ss_pred             cchhhhhhhhh-cccceEEcCCceEEEEEccCeEEEEEEEC-----------CCCeEEEEEcCEEEEcC
Confidence            44455566665 67999999999999987665543 22222           12345789999999884

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.82  E-value=6.5e-09  Score=89.97  Aligned_cols=55  Identities=29%  Similarity=0.413  Sum_probs=43.8

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC--------CCCCccccCCccchhhhccc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV--------SPGGGAWLGGQLFSAMVVRK  144 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~--------~~Gg~~~~~g~~~~~~~~~~  144 (356)
                      .|||+|||+||||++||+.|++....+|+|+|+..        .+||.|.+.++++.+.+...
T Consensus         3 ~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~~~~~~~~~~lGG~c~n~g~ip~k~l~~~   65 (238)
T d1aoga1           3 IFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMVHGPPFFSALGGTCVNVGCVPKKLMVTG   65 (238)
T ss_dssp             SBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCSSSBTTTBCCTTHHHHHHSHHHHHHHHHH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeecccCccccccccccccccccccchhhhhh
Confidence            59999999999999999999997235789999853        35777777778777766554

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.81  E-value=2.7e-08  Score=77.28  Aligned_cols=93  Identities=8%  Similarity=0.072  Sum_probs=68.5

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.|+|||||..|+.+|..|++. |.+|+|+|+.+.+-..                                      ...
T Consensus        23 ~~v~IiGgG~iG~E~A~~l~~~-g~~Vtlv~~~~~il~~--------------------------------------~d~   63 (117)
T d1onfa2          23 KKIGIVGSGYIAVELINVIKRL-GIDSYIFARGNRILRK--------------------------------------FDE   63 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTT-TCEEEEECSSSSSCTT--------------------------------------SCH
T ss_pred             CEEEEECCchHHHHHHHHHHhc-cccceeeehhcccccc--------------------------------------ccH
Confidence            3699999999999999999999 9999999998653210                                      014


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEE-EcCEEEEc
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVM-EAKVVVSS  237 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i-~Ak~VI~A  237 (356)
                      ++.+.+.+.+. +.|++++++++++++...++....+.+.+              +..+ .+|.||+|
T Consensus        64 ~~~~~~~~~l~-~~gV~i~~~~~v~~i~~~~~~~~~v~~~~--------------G~~~~~~D~Vi~A  116 (117)
T d1onfa2          64 SVINVLENDMK-KNNINIVTFADVVEIKKVSDKNLSIHLSD--------------GRIYEHFDHVIYC  116 (117)
T ss_dssp             HHHHHHHHHHH-HTTCEEECSCCEEEEEESSTTCEEEEETT--------------SCEEEEESEEEEC
T ss_pred             HHHHHHHHHHH-hCCCEEEECCEEEEEEEcCCCeEEEEECC--------------CCEEEeCCEEEEe
Confidence            44555566665 57999999999999987654333455542              2445 46999987

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.75  E-value=5.9e-08  Score=75.24  Aligned_cols=93  Identities=12%  Similarity=0.144  Sum_probs=66.9

Q ss_pred             ccEEEECCCHHHHHHHHHhhc---CCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEe
Q 018414           91 TDVVVVGAGSAGLSCAYELSK---NPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIK  167 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~---~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~  167 (356)
                      -.++|||||+.|+.+|..+..   + +.+|+|+|+++.+-..                                      
T Consensus        21 ~~v~ivGgG~ig~E~A~~l~~l~~~-~~~Vtli~~~~~iL~~--------------------------------------   61 (117)
T d1aoga2          21 RRVLTVGGGFISVEFAGIFNAYKPK-DGQVTLCYRGEMILRG--------------------------------------   61 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHCCT-TCEEEEEESSSSSSTT--------------------------------------
T ss_pred             CeEEEECCcHHHHHHHHHhhhcccC-CcEEEEEeccchhhcc--------------------------------------
Confidence            479999999999999976554   5 6789999998643100                                      


Q ss_pred             chHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEc
Q 018414          168 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSS  237 (356)
Q Consensus       168 ~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~A  237 (356)
                      ...++.+.+.+.+. +.|++++++++++++...++....+.+++              +.++.+|.||+|
T Consensus        62 ~d~~~~~~l~~~l~-~~GV~v~~~~~v~~ie~~~~~~~~v~~~~--------------G~~i~~D~Vi~A  116 (117)
T d1aoga2          62 FDHTLREELTKQLT-ANGIQILTKENPAKVELNADGSKSVTFES--------------GKKMDFDLVMMA  116 (117)
T ss_dssp             SCHHHHHHHHHHHH-HTTCEEEESCCEEEEEECTTSCEEEEETT--------------SCEEEESEEEEC
T ss_pred             cchHHHHHHHHHHH-hcCcEEEcCCEEEEEEEcCCCeEEEEECC--------------CcEEEeCEEEEe
Confidence            01334455555555 67999999999999987644333465542              467999999987

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.74  E-value=2e-08  Score=78.65  Aligned_cols=99  Identities=17%  Similarity=0.205  Sum_probs=68.5

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      -.++|||||+.|+.+|..|++. |.+|+|+++......                                       ...
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~l-G~~Vtii~~~~~l~~---------------------------------------~D~   60 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGI-GLDVTVMVRSILLRG---------------------------------------FDQ   60 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHT-TCCEEEEESSSSSTT---------------------------------------SCH
T ss_pred             CeEEEECCCccHHHHHHHHhhc-CCeEEEEEechhhcc---------------------------------------CCH
Confidence            3799999999999999999999 999999997532110                                       014


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeC-C--eEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-G--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG  239 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~-~--~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtG  239 (356)
                      ++.+.+.+.+. +.|++|++++.++++...+ +  ....+....      ..   .++...+.+|.|++|+|
T Consensus        61 ~~~~~l~~~l~-~~Gv~i~~~~~v~~~~~~~~~~~~~~~v~~~~------~~---~~~~~~~~~D~vl~AiG  122 (122)
T d1h6va2          61 DMANKIGEHME-EHGIKFIRQFVPTKIEQIEAGTPGRLKVTAKS------TN---SEETIEDEFNTVLLAVG  122 (122)
T ss_dssp             HHHHHHHHHHH-HTTEEEEESCEEEEEEEEECSTTCEEEEEEEC------TT---SCEEEEEEESEEECCCC
T ss_pred             HHHHHHHHHHH-HCCCEEEECCEEEEEEEecCCCccEEEEEEEE------CC---CCcEEEEECCEEEEEeC
Confidence            44555666665 6799999999999997642 1  122222221      11   11234678899999998

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=4.6e-09  Score=94.28  Aligned_cols=41  Identities=24%  Similarity=0.507  Sum_probs=38.1

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW  131 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~  131 (356)
                      +.+|||||||++||+||+.|+++ |++|+|+|+++.+||.++
T Consensus         5 ~~kViVIGaG~aGL~aA~~L~~~-G~~V~VlEa~~r~GGr~~   45 (449)
T d2dw4a2           5 TGKVIIIGSGVSGLAAARQLQSF-GMDVTLLEARDRVGGRVA   45 (449)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHT-TCEEEEECSSSSSBTTCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhC-CCCEEEEeCCCCCcccEE
Confidence            57899999999999999999999 999999999999998653

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.70  E-value=4.5e-09  Score=90.82  Aligned_cols=39  Identities=41%  Similarity=0.622  Sum_probs=35.7

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccCCCCCcc
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSVSPGGGA  130 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~~~Gg~~  130 (356)
                      .||+|||||++||+||+.|+++ |+ +|+|+||.+.+||.+
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~-G~~~V~vlE~~~~~GG~~   40 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEA-GITDLLILEATDHIGGRM   40 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHT-TCCCEEEECSSSSSBTTS
T ss_pred             CCEEEECCcHHHHHHHHHHHhC-CCCcEEEEECCCCCCceE
Confidence            3899999999999999999999 96 699999999998754

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.69  E-value=4.8e-09  Score=95.00  Aligned_cols=40  Identities=40%  Similarity=0.652  Sum_probs=38.2

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccc
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW  131 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~  131 (356)
                      |||||||||++||++|+.|++. |.+|+|+|+.+.+||.+.
T Consensus         2 ~dv~IIGaG~sGl~~A~~L~~~-g~~V~iiEk~~~iGG~~~   41 (298)
T d1i8ta1           2 YDYIIVGSGLFGAVCANELKKL-NKKVLVIEKRNHIGGNAY   41 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGG-TCCEEEECSSSSSSGGGC
T ss_pred             ccEEEECCcHHHHHHHHHHHhC-CCcEEEEECCCCcccceE
Confidence            8999999999999999999999 999999999999999774

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=98.61  E-value=1.3e-08  Score=94.24  Aligned_cols=34  Identities=29%  Similarity=0.508  Sum_probs=31.1

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS  125 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~  125 (356)
                      .||+||||+|++|+.+|.+|+++  ++|+|||++..
T Consensus        26 ~YD~IIVGsG~aG~vlA~rLae~--~kVLvLEaG~~   59 (351)
T d1ju2a1          26 SYDYVIVGGGTSGCPLAATLSEK--YKVLVLERGSL   59 (351)
T ss_dssp             EEEEEEECCSTTHHHHHHHHTTT--SCEEEECSSBC
T ss_pred             CccEEEECccHHHHHHHHHhcCC--CCEEEEecCCC
Confidence            59999999999999999999975  89999999863

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=5.5e-09  Score=89.96  Aligned_cols=130  Identities=14%  Similarity=0.191  Sum_probs=70.2

Q ss_pred             cccEEEECCCHHHHHHHHHhhcC-CCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCe--EEE
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNY--VVI  166 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~-~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~--~~~  166 (356)
                      ++++||||||++|+.+|..|.++ +..+|++|++...+.   +....+ .+.+.......+...+.  +......  ...
T Consensus         4 ~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~p---y~r~~L-s~~~~~~~~~~~~~~~~--~~~~~~~~~~~~   77 (213)
T d1m6ia1           4 HVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELP---YMRPPL-SKELWFSDDPNVTKTLR--FKQWNGKERSIY   77 (213)
T ss_dssp             EEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCC---BCSGGG-GTGGGCC--CTHHHHCE--EECTTSCEEESB
T ss_pred             CCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCCC---cccccc-ceecccccCchhhhhhh--hhhcccchhhhh
Confidence            58999999999999999999874 246799999865431   111111 11111111111111110  0000000  000


Q ss_pred             echHHH-HHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          167 KHAALF-TSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       167 ~~~~~~-~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                      .....+ .........++.|++++++++|+.|..++..   |.+.              ++.++.+|.||+|+|+..
T Consensus        78 ~~~~~~~~~~~~~~~~~~~gI~~~~g~~V~~id~~~~~---V~l~--------------dG~~i~~d~lViAtG~~~  137 (213)
T d1m6ia1          78 FQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNM---VKLN--------------DGSQITYEKCLIATGGTE  137 (213)
T ss_dssp             SSCGGGSBCTTTTTTSTTCEEEEEETCCEEEEEGGGTE---EEET--------------TSCEEEEEEEEECCCEEE
T ss_pred             cCChhhhhhhhhHHHHHHCCeEEEeCCEEEEeeccCce---eeec--------------cceeeccceEEEeeeeec
Confidence            000000 0000011123679999999999999766654   3444              247799999999999643

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.55  E-value=1.3e-08  Score=88.69  Aligned_cols=40  Identities=25%  Similarity=0.439  Sum_probs=36.8

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~  130 (356)
                      ..+|+|||||++|+++|..|+++ |++|+|+|+...+||..
T Consensus        49 ~k~VvIIGaGpAGl~aA~~l~~~-G~~v~l~E~~~~~GG~~   88 (233)
T d1djqa3          49 KDSVLIVGAGPSGSEAARVLMES-GYTVHLTDTAEKIGGHL   88 (233)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSTTTTH
T ss_pred             CceEEEEcccHHHHHHHHHHHHh-ccceeeEeeccccCCcc
Confidence            47999999999999999999999 99999999999888743

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=98.49  E-value=4.3e-08  Score=89.47  Aligned_cols=37  Identities=41%  Similarity=0.595  Sum_probs=33.4

Q ss_pred             cccEEEECCCHHHHHHHHHhh-----cCCCCeEEEEeccCCCC
Q 018414           90 DTDVVVVGAGSAGLSCAYELS-----KNPNIQIAIIEQSVSPG  127 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La-----~~~G~~V~llEk~~~~G  127 (356)
                      .|||+|||||++||++|..|+     +. |++|+||||.+.+.
T Consensus         7 ~yDV~IvGaG~aGl~lA~~La~~~~~~~-G~~v~vlEr~~~~~   48 (360)
T d1pn0a1           7 YCDVLIVGAGPAGLMAARVLSEYVRQKP-DLKVRIIDKRSTKV   48 (360)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHST-TCCEEEECSSSSCC
T ss_pred             CCCEEEECcCHHHHHHHHHHHhcccccC-CCcEEEEcCCCCCC
Confidence            599999999999999999997     46 99999999987654

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.43  E-value=2e-07  Score=78.62  Aligned_cols=112  Identities=17%  Similarity=0.215  Sum_probs=68.5

Q ss_pred             cEEEECCCHHHHHHHHHhhcC-CCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414           92 DVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA  170 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~-~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  170 (356)
                      .|+|||||.+|+.+|..|.+. ++.+|+++|+...+.   +....+          ..++..   .+...+.        
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~---~~~~~~----------~~~l~~---~~~~~~~--------   57 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFIS---FLSAGM----------QLYLEG---KVKDVNS--------   57 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSS---BCGGGH----------HHHHTT---SSCCGGG--------
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCccc---ccccCc----------chhhcc---cccchHH--------
Confidence            499999999999999999883 367899999986542   110000          011110   0000000        


Q ss_pred             HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414          171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD  241 (356)
Q Consensus       171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~  241 (356)
                       +.....+.+. +.|++++.+++|+++..+++.+......            +++..++.+|.+|+|+|..
T Consensus        58 -~~~~~~~~l~-~~gi~v~~~~~V~~i~~~~~~v~~~~~~------------~g~~~~~~~D~li~a~G~~  114 (198)
T d1nhpa1          58 -VRYMTGEKME-SRGVNVFSNTEITAIQPKEHQVTVKDLV------------SGEERVENYDKLIISPGAV  114 (198)
T ss_dssp             -SBSCCHHHHH-HTTCEEEETEEEEEEETTTTEEEEEETT------------TCCEEEEECSEEEECCCEE
T ss_pred             -HHHhhHHHHH-HCCcEEEEeeceeeEeeccccceeeecc------------cccccccccceeeEeecce
Confidence             0000112222 4699999999999998776654322211            2245778999999999954

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.42  E-value=8.8e-08  Score=87.18  Aligned_cols=39  Identities=31%  Similarity=0.532  Sum_probs=36.9

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA  130 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~  130 (356)
                      ..|+|||||++||++|+.|+++ |++|+|+|+.+.+||.+
T Consensus         3 KKI~IIGaG~sGL~aA~~L~k~-G~~V~viEk~~~iGG~~   41 (314)
T d2bi7a1           3 KKILIVGAGFSGAVIGRQLAEK-GHQVHIIDQRDHIGGNS   41 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT-TCEEEEEESSSSSSGGG
T ss_pred             CEEEEECCcHHHHHHHHHHHhC-CCCEEEEECCCCCcCee
Confidence            4699999999999999999999 99999999999999875

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.30  E-value=1.2e-06  Score=72.60  Aligned_cols=107  Identities=21%  Similarity=0.152  Sum_probs=64.2

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~  169 (356)
                      +..|+|||||++|+.+|..|.+. |.+|.|++........ +....     + .    ..+......             
T Consensus         3 ~a~VvIIGgG~~G~e~A~~l~~~-g~~v~i~~~~~~~~~~-~~~~~-----l-~----~~~~~~~~~-------------   57 (183)
T d1d7ya1           3 KAPVVVLGAGLASVSFVAELRQA-GYQGLITVVGDEAERP-YDRPP-----L-S----KDFMAHGDA-------------   57 (183)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHH-TCCSCEEEEESSCSCC-BCSGG-----G-G----TTHHHHCCG-------------
T ss_pred             CCCEEEECccHHHHHHHHHHHhc-CCceEEEEEecccccc-hhhHH-----H-h----hhhhhhhhh-------------
Confidence            35799999999999999999998 8887777765433210 10000     0 0    000000000             


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG  242 (356)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~  242 (356)
                          ..+........+++++.+++++++..+...   +.+.              +..++.+|.||+|+|...
T Consensus        58 ----~~~~~~~~~~~~i~~~~~~~v~~i~~~~~~---~~~~--------------~g~~~~~D~vi~a~G~~p  109 (183)
T d1d7ya1          58 ----EKIRLDCKRAPEVEWLLGVTAQSFDPQAHT---VALS--------------DGRTLPYGTLVLATGAAP  109 (183)
T ss_dssp             ----GGSBCCGGGSTTCEEEETCCEEEEETTTTE---EEET--------------TSCEEECSEEEECCCEEE
T ss_pred             ----hhHHHHHhhcCCeEEEEeccccccccccce---eEec--------------CCcEeeeeeEEEEEEEEc
Confidence                000001123568999999999888655443   2333              247899999999999543

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.28  E-value=1.5e-07  Score=81.03  Aligned_cols=37  Identities=24%  Similarity=0.422  Sum_probs=34.4

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCC-------CeEEEEeccCCCCC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPN-------IQIAIIEQSVSPGG  128 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G-------~~V~llEk~~~~Gg  128 (356)
                      +.|+|||+|||||+||+.|+++ |       ++|+|+||.+.+||
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~-G~~~~~~~~~V~v~E~~~~~GG   46 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKA-ADTTEDLDMAVDMLEMLPTPWG   46 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHH-HHHSTTCCEEEEEEESSSSCST
T ss_pred             cEEEEECcCHHHHHHHHHHHHc-CCccccCCCceEEEecCCCCCC
Confidence            6899999999999999999987 6       68999999999887

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.23  E-value=4.5e-07  Score=75.67  Aligned_cols=37  Identities=35%  Similarity=0.604  Sum_probs=33.9

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCe-EEEEeccCCCCC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQ-IAIIEQSVSPGG  128 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~-V~llEk~~~~Gg  128 (356)
                      -.|+|||||++||+||+.|+++ |++ |+|+||.+.+|+
T Consensus         5 ~kVaIIGaGpaGl~aA~~l~~~-G~~~V~v~E~~~~~gg   42 (196)
T d1gtea4           5 AKIALLGAGPASISCASFLARL-GYSDITIFEKQEYVGG   42 (196)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT-TCCCEEEEESSSSCST
T ss_pred             CEEEEECChHHHHHHHHHHHHC-CCCeEEEEEecCcccc
Confidence            5799999999999999999999 985 999999987765

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.18  E-value=1.4e-05  Score=62.15  Aligned_cols=96  Identities=19%  Similarity=0.250  Sum_probs=74.8

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~  169 (356)
                      .-+|+|||+|-+.+-.|..|++. ..+|.|+-+++....                                         
T Consensus        30 gk~V~VvGgG~sA~~~A~~L~~~-a~~V~li~r~~~~~~-----------------------------------------   67 (126)
T d1fl2a2          30 GKRVAVIGGGNSGVEAAIDLAGI-VEHVTLLEFAPEMKA-----------------------------------------   67 (126)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTT-BSEEEEECSSSSCCS-----------------------------------------
T ss_pred             CceEEEEeCCHHHHHHHHhhhcc-CCceEEEeccccccc-----------------------------------------
Confidence            46899999999999999999998 899999988754211                                         


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCC
Q 018414          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG  239 (356)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtG  239 (356)
                         ...+.+++.+..+++++++++++++.-+++.+.++...+      ..   +++..++.+|.|.++-|
T Consensus        68 ---~~~~~~~~~~~~~I~v~~~~~v~~i~G~~~~v~~v~l~~------~~---tge~~~l~vdgvFv~IG  125 (126)
T d1fl2a2          68 ---DQVLQDKLRSLKNVDIILNAQTTEVKGDGSKVVGLEYRD------RV---SGDIHNIELAGIFVQIG  125 (126)
T ss_dssp             ---CHHHHHHHHTCTTEEEESSEEEEEEEESSSSEEEEEEEE------TT---TCCEEEEECSEEEECSC
T ss_pred             ---ccccccccccccceeEEcCcceEEEEccccceeeEEEEE------CC---CCCEEEEECCEEEEEeC
Confidence               012345555567899999999999987777888887753      11   23567899999999876

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.10  E-value=1.2e-06  Score=75.09  Aligned_cols=30  Identities=33%  Similarity=0.387  Sum_probs=26.1

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEec
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQ  122 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk  122 (356)
                      .|+|||||++||++|++|+++ |.+|+++|+
T Consensus         2 kV~VIGaGi~GlstA~~L~~~-G~~v~v~e~   31 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHER-YHSVLQPLD   31 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-HTTTSSSCE
T ss_pred             EEEEECchHHHHHHHHHHHHC-CCCceEEee
Confidence            499999999999999999999 887665555

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.06  E-value=1.6e-06  Score=74.40  Aligned_cols=38  Identities=34%  Similarity=0.561  Sum_probs=33.3

Q ss_pred             ccEEEECCCHHHHHHHHHhhcC-CCCeEEEEeccCCCCC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGG  128 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~-~G~~V~llEk~~~~Gg  128 (356)
                      ..|+|||||+|||+||..|.++ .|.+|+|+|+.+.+||
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG   40 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFG   40 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCT
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCc
Confidence            3799999999999999999763 2789999999998886

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=97.96  E-value=0.00014  Score=56.28  Aligned_cols=100  Identities=17%  Similarity=0.224  Sum_probs=74.2

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~  169 (356)
                      .-+|+|||+|-+.+-.|..|++. ..+|+++-|++...+                                        .
T Consensus        27 ~k~V~VvGgGdsA~e~A~~L~~~-a~~V~li~r~~~~~~----------------------------------------~   65 (126)
T d1trba2          27 NQKVAVIGGGNTAVEEALYLSNI-ASEVHLIHRRDGFRA----------------------------------------E   65 (126)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTT-SSEEEEECSSSSCCC----------------------------------------C
T ss_pred             CCEEEEECCCHHHHHHHHHHhhc-CCcEEEEeecccccc----------------------------------------h
Confidence            45899999999999999999998 899999998764221                                        1


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCC
Q 018414          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG  239 (356)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtG  239 (356)
                      ....+.+.+.. ++.++.+++++.+.++.-++..+.++...+      ..++  .+..++.++.|+++-|
T Consensus        66 ~~~~~~~~~~~-~~~~i~~~~~~~v~~i~G~~~~v~~v~l~~------~~~~--e~~~~l~~dgvFv~iG  126 (126)
T d1trba2          66 KILIKRLMDKV-ENGNIILHTNRTLEEVTGDQMGVTGVRLRD------TQNS--DNIESLDVAGLFVAIG  126 (126)
T ss_dssp             HHHHHHHHHHH-HTSSEEEECSCEEEEEEECSSSEEEEEEEC------CTTC--CCCEEEECSEEEECSC
T ss_pred             hHHHHHHHHhh-cccceeEecceEEEEEECCCCceEEEEEEE------CCCC--ceEEEEECCEEEEEeC
Confidence            22333444443 367899999999999988777788888753      1111  1236799999999876

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.93  E-value=4.8e-06  Score=67.51  Aligned_cols=33  Identities=33%  Similarity=0.668  Sum_probs=28.7

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSP  126 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~  126 (356)
                      .|+|||||++|+.+|..|++  +.+|+|+|+.+.+
T Consensus         2 rVvIIGgG~~G~e~A~~l~~--~~~Vtvv~~~~~~   34 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ--TYEVTVIDKEPVP   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT--TSEEEEECSSSSC
T ss_pred             eEEEECCcHHHHHHHHHHHc--CCCEEEEeccccc
Confidence            48999999999999999965  6799999987643

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.89  E-value=1.2e-05  Score=64.70  Aligned_cols=107  Identities=14%  Similarity=0.033  Sum_probs=65.7

Q ss_pred             ccEEEE--CCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEec
Q 018414           91 TDVVVV--GAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKH  168 (356)
Q Consensus        91 ~DVvII--GgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~  168 (356)
                      -.|+|+  |||..|+.+|..|++. |.+|+|+|+.+.++...                                      
T Consensus        40 ~~vvi~d~ggg~ig~e~A~~la~~-G~~Vtlv~~~~~~~~~~--------------------------------------   80 (156)
T d1djqa2          40 KRVVILNADTYFMAPSLAEKLATA-GHEVTIVSGVHLANYMH--------------------------------------   80 (156)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHT-TCEEEEEESSCTTTHHH--------------------------------------
T ss_pred             CceEEEecCCChHHHHHHHHHHHc-CCeEEEEecCCcccccc--------------------------------------
Confidence            356665  9999999999999999 99999999986543100                                      


Q ss_pred             hHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcc-eeeec-----ccCCCCCCCCeEEEcCEEEEcCC
Q 018414          169 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNW-ALVSM-----NHDTQSCMDPNVMEAKVVVSSCG  239 (356)
Q Consensus       169 ~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~-~~~~~-----~~~~~~~g~~~~i~Ak~VI~AtG  239 (356)
                      .......+.+.+. +.|+++++++++.++..  +.+....... .....     -.......+...+.+|.+|+++|
T Consensus        81 ~~~~~~~~~~~l~-~~GV~i~~~~~v~~i~~--~~v~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~le~D~vilvtg  154 (156)
T d1djqa2          81 FTLEYPNMMRRLH-ELHVEELGDHFCSRIEP--GRMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTG  154 (156)
T ss_dssp             HTTCHHHHHHHHH-HTTCEEEETEEEEEEET--TEEEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESC
T ss_pred             chhHHHHHHHHHh-hccceEEeccEEEEecC--cceEEEeeeccccceeeeeeEEEecccCCccCcEecceEEEEec
Confidence            0111233455555 57999999999998853  3332211100 00000     00001122346789999999998

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.87  E-value=0.00012  Score=57.02  Aligned_cols=94  Identities=15%  Similarity=0.221  Sum_probs=71.7

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~  169 (356)
                      .-+|+|||+|-+.+-.|+.|++. -.+|.||-|++.+.+                                         
T Consensus        34 gk~V~VvGgGdsA~e~A~~L~~~-a~~V~li~r~~~~ra-----------------------------------------   71 (130)
T d1vdca2          34 NKPLAVIGGGDSAMEEANFLTKY-GSKVYIIHRRDAFRA-----------------------------------------   71 (130)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTT-SSEEEEECSSSSCCS-----------------------------------------
T ss_pred             CCEEEEEcCchHHHHHHHHHhCC-CCcEEEEEecccccc-----------------------------------------
Confidence            46899999999999999999998 899999998865321                                         


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeC--CeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEc
Q 018414          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG--GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSS  237 (356)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~--~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~A  237 (356)
                         ...+.+++.+..++++++++++.++.-++  +.+.++...+      ..   +++..++.++.|.+|
T Consensus        72 ---~~~~~~~l~~~~nI~v~~~~~v~~i~Gd~~~~~v~~v~l~~------~~---tge~~~l~~dGvFVa  129 (130)
T d1vdca2          72 ---SKIMQQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKN------VV---TGDVSDLKVSGLFFA  129 (130)
T ss_dssp             ---CHHHHHHHHTCTTEEEECSEEEEEEEESSSSSSEEEEEEEE------TT---TCCEEEEECSEEEEC
T ss_pred             ---chhhhhccccCCceEEEeccEEEEEEccCCcccEEEEEEEE------CC---CCCEEEEECCEEEEE
Confidence               12344556668899999999999998764  3577776643      12   234678999988875

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.86  E-value=6.8e-05  Score=60.22  Aligned_cols=103  Identities=18%  Similarity=0.242  Sum_probs=66.6

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA  169 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~  169 (356)
                      -.|+|||||-+|+-+|..|.+. |. +|+++.+.+.....                                     ...
T Consensus        46 ~kVvVIGGGdtA~D~A~~a~r~-GA~~V~vi~rr~~~~~~-------------------------------------a~~   87 (153)
T d1gtea3          46 GAVIVLGAGDTAFDCATSALRC-GARRVFLVFRKGFVNIR-------------------------------------AVP   87 (153)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHT-TCSEEEEECSSCGGGCC-------------------------------------SCH
T ss_pred             CEEEEECCChhHHHHHHHHHHc-CCcceeEEEeCChhhhc-------------------------------------cch
Confidence            3799999999999999999998 75 48888876421100                                     000


Q ss_pred             HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCC---CCCCCeEEEcCEEEEcCC
Q 018414          170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQ---SCMDPNVMEAKVVVSSCG  239 (356)
Q Consensus       170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~---~~g~~~~i~Ak~VI~AtG  239 (356)
                      .    . ...+. +.++++++....+++..+++++.++......  .+..+.   ..++..+|.||.||+|-|
T Consensus        88 ~----~-~~~a~-~~~~~~~~~~~~~ei~~~~~~~~~v~~~~~e--~d~~G~~~~~~g~e~~i~aD~V~~AiG  152 (153)
T d1gtea3          88 E----E-VELAK-EEKCEFLPFLSPRKVIVKGGRIVAVQFVRTE--QDETGKWNEDEDQIVHLKADVVISAFG  152 (153)
T ss_dssp             H----H-HHHHH-HTTCEEECSEEEEEEEEETTEEEEEEEEEEE--ECTTSCEEEEEEEEEEEECSEEEECSC
T ss_pred             h----h-eeecc-cccceeEeccccEEEEecCCceEEEEEEEee--ECCCCCEecCCCCEEEEECCEEEECcC
Confidence            0    1 11222 4588999999989998888877766543210  000000   012346799999999998

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.60  E-value=0.00014  Score=58.40  Aligned_cols=26  Identities=27%  Similarity=0.465  Sum_probs=23.3

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeE
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQI  117 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V  117 (356)
                      -.|+|||||..|+-+|..+++. |.++
T Consensus        30 krVvVIGgG~~g~d~a~~~~r~-G~~~   55 (162)
T d1ps9a2          30 NKVAIIGCGGIGFDTAMYLSQP-GEST   55 (162)
T ss_dssp             SEEEEECCHHHHHHHHHHHTCC-SSCG
T ss_pred             CceEEEcCchhHHHHHHHHHHc-CCcc
Confidence            4799999999999999999998 7654

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.43  E-value=7.5e-05  Score=60.93  Aligned_cols=35  Identities=29%  Similarity=0.389  Sum_probs=30.9

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSP  126 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~  126 (356)
                      -+|+|||||++|+.+|..|++. |.+|.|++.....
T Consensus         4 ~~VvIIGgG~~G~e~A~~l~~~-g~~v~v~~~~~~~   38 (185)
T d1q1ra1           4 DNVVIVGTGLAGVEVAFGLRAS-GWEGNIRLVGDAT   38 (185)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCCSEEEEECSCC
T ss_pred             CCEEEECCcHHHHHHHHHHHHc-CCceEEEEecCcc
Confidence            4899999999999999999999 9998888877543

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=97.01  E-value=0.00021  Score=57.58  Aligned_cols=34  Identities=35%  Similarity=0.636  Sum_probs=29.6

Q ss_pred             cEEEECCCHHHHHHHHHhhcC-CCCeEEEEeccCC
Q 018414           92 DVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVS  125 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~-~G~~V~llEk~~~  125 (356)
                      .|||||||++|+.+|..|.+. +..+|+|+|+.+.
T Consensus         4 rivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~   38 (186)
T d1fcda1           4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTD   38 (186)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSC
T ss_pred             cEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCc
Confidence            699999999999999999985 2468999998864

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.29  E-value=0.0015  Score=52.39  Aligned_cols=32  Identities=16%  Similarity=0.335  Sum_probs=30.3

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .|+|||+|..|..+|..|+++ |++|+|++|..
T Consensus         4 ~IliiGaG~~G~~~a~~L~~~-g~~V~v~dr~~   35 (182)
T d1e5qa1           4 SVLMLGSGFVTRPTLDVLTDS-GIKVTVACRTL   35 (182)
T ss_dssp             EEEEECCSTTHHHHHHHHHTT-TCEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCEEEEEECCh
Confidence            689999999999999999999 99999999874

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.16  E-value=0.0025  Score=46.04  Aligned_cols=35  Identities=26%  Similarity=0.595  Sum_probs=31.7

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSP  126 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~  126 (356)
                      -.|+|+|.|.+|+++|..|.++ |.+|++.|.....
T Consensus         6 K~v~ViGlG~sG~s~a~~L~~~-g~~v~~~D~~~~~   40 (93)
T d2jfga1           6 KNVVIIGLGLTGLSCVDFFLAR-GVTPRVMDTRMTP   40 (93)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT-TCCCEEEESSSSC
T ss_pred             CEEEEEeECHHHHHHHHHHHHC-CCEEEEeeCCcCc
Confidence            4699999999999999999999 9999999987643

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=95.91  E-value=0.0033  Score=50.74  Aligned_cols=32  Identities=19%  Similarity=0.244  Sum_probs=30.1

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .+.|||+|..|+..|..|+++ |++|.++++.+
T Consensus         3 ~iaIiGaG~~G~~~A~~l~~~-G~~V~~~~r~~   34 (184)
T d1bg6a2           3 TYAVLGLGNGGHAFAAYLALK-GQSVLAWDIDA   34 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             EEEEECccHHHHHHHHHHHHC-CCEEEEEECCH
Confidence            589999999999999999999 99999999864

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.66  E-value=0.0049  Score=57.94  Aligned_cols=40  Identities=25%  Similarity=0.377  Sum_probs=37.1

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG  129 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~  129 (356)
                      .+|||||+|.|..=+.+|..|++. |+||+=||++..-||.
T Consensus         5 ~e~DVII~GTGL~ESILAaAlSr~-GkkVLHiD~N~yYGg~   44 (491)
T d1vg0a1           5 SDFDVIVIGTGLPESIIAAACSRS-GQRVLHVDSRSYYGGN   44 (491)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSCGG
T ss_pred             CccCEEEECCChHHHHHHHHHHhc-CCEEEEecCCCcCCCc
Confidence            369999999999999999999999 9999999999988764

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.49  E-value=0.006  Score=46.76  Aligned_cols=32  Identities=25%  Similarity=0.457  Sum_probs=30.1

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .|+|+|+|..|...|..|.+. |++|+++|+++
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~-g~~v~vid~d~   33 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEK-GHDIVLIDIDK   33 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHC-CCCcceecCCh
Confidence            589999999999999999999 99999999975

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=95.45  E-value=0.0072  Score=47.76  Aligned_cols=33  Identities=18%  Similarity=0.222  Sum_probs=30.8

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS  125 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~  125 (356)
                      .|+|||+|..|...|..|++. |++|++++|...
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~-G~~V~~~~r~~~   34 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQ-GHEVQGWLRVPQ   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHC-CCceEEEEcCHH
Confidence            589999999999999999999 999999998764

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=95.09  E-value=0.012  Score=47.18  Aligned_cols=34  Identities=26%  Similarity=0.359  Sum_probs=31.4

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      ...|+|||+|.+|+.++..+.+. |.+|.++|.+.
T Consensus        32 pa~V~ViGaGvaG~~A~~~A~~l-GA~V~~~D~~~   65 (168)
T d1pjca1          32 PGKVVILGGGVVGTEAAKMAVGL-GAQVQIFDINV   65 (168)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCH
T ss_pred             CcEEEEECCChHHHHHHHHHhhC-CCEEEEEeCcH
Confidence            46899999999999999999999 99999999863

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=95.06  E-value=0.011  Score=48.06  Aligned_cols=34  Identities=21%  Similarity=0.296  Sum_probs=31.5

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      ...|+|||+|.+|+.||..+.+. |..|.++|.+.
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~l-GA~V~v~D~~~   62 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKRL-GAVVMATDVRA   62 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCS
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHc-CCEEEEEeccH
Confidence            46899999999999999999999 99999999874

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=94.89  E-value=0.009  Score=45.66  Aligned_cols=32  Identities=22%  Similarity=0.316  Sum_probs=30.0

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .++|||.|..|..+|..|.+. |++|+++|+++
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~-g~~vvvid~d~   33 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRM-GHEVLAVDINE   33 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT-TCCCEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHC-CCeEEEecCcH
Confidence            489999999999999999999 99999999874

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.55  E-value=0.016  Score=47.51  Aligned_cols=33  Identities=21%  Similarity=0.376  Sum_probs=30.7

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      -.|.|||+|..|...|+.++++ |++|+++|+.+
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~-G~~V~l~D~~~   37 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAAT-GHTVVLVDQTE   37 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             EEEEEECcCHHHHHHHHHHHhC-CCcEEEEECCh
Confidence            3799999999999999999999 99999999874

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.49  E-value=0.12  Score=42.91  Aligned_cols=55  Identities=15%  Similarity=0.092  Sum_probs=35.3

Q ss_pred             CCCcEEEcCeEEEEEEEeC--CeEEEEEEcceeeecccCCC-----CCCCCeEEEcCEEEEcCC
Q 018414          183 RPNVKLFNAVAAEDLIVKG--GRVGGVVTNWALVSMNHDTQ-----SCMDPNVMEAKVVVSSCG  239 (356)
Q Consensus       183 ~~gv~i~~~~~v~~i~~~~--~~v~gv~~~~~~~~~~~~~~-----~~g~~~~i~Ak~VI~AtG  239 (356)
                      ..++.+.+.....++..++  +++.++++....  ++....     ..|+..++.|+.||.|.|
T Consensus       163 ~~~i~~~f~~~p~~i~~~~~g~~v~~v~~~~~~--~~~~~~~~~~~~tg~~~~ipadlVi~AiG  224 (225)
T d1cjca1         163 SRAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTR--LEGIGEATRAVPTGDVEDLPCGLVLSSIG  224 (225)
T ss_dssp             SEEEEEECSEEEEEEEECTTSSSEEEEEEEEEE--EESSGGGCEEEEEEEEEEEECSEEEECCC
T ss_pred             ccceEEEeecccccccccCCCCeEEEEEEEEeE--ECCCCCCCcccCCCcEEEEECCEEEECCC
Confidence            3468899999999998865  367776653211  111000     023456799999999988

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=94.07  E-value=0.017  Score=47.00  Aligned_cols=32  Identities=25%  Similarity=0.369  Sum_probs=30.0

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .|.|||+|..|...|..++++ |++|+++|...
T Consensus         6 ~vaViGaG~mG~~iA~~~a~~-G~~V~l~D~~~   37 (186)
T d1wdka3           6 QAAVLGAGIMGGGIAYQSASK-GTPILMKDINE   37 (186)
T ss_dssp             SEEEECCHHHHHHHHHHHHHT-TCCEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCeEEEEECCH
Confidence            599999999999999999999 99999999874

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.83  E-value=0.022  Score=46.84  Aligned_cols=32  Identities=25%  Similarity=0.374  Sum_probs=29.7

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .|.|||.|-.|+.+|..|++. |++|+.+|.+.
T Consensus         2 kI~ViGlG~vGl~~a~~la~~-g~~V~g~D~n~   33 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSAR-GHEVIGVDVSS   33 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             EEEEECCCHhHHHHHHHHHhC-CCcEEEEeCCH
Confidence            489999999999999999999 99999999763

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=93.73  E-value=0.018  Score=47.00  Aligned_cols=33  Identities=27%  Similarity=0.378  Sum_probs=30.1

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      ..|+|||+|.-|.+.|..|+++ |.+|.+..++.
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~-g~~V~l~~r~~   40 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKK-CREVCVWHMNE   40 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTT-EEEEEEECSCH
T ss_pred             ceEEEECCCHHHHHHHHHHHHc-CCeEEEEEecH
Confidence            3699999999999999999999 99999998763

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.20  E-value=0.027  Score=43.93  Aligned_cols=33  Identities=21%  Similarity=0.598  Sum_probs=29.9

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEecc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~  123 (356)
                      .-.|+|||||..|+.-|..|.+. |.+|+|+...
T Consensus        13 gkrvLViGgG~va~~ka~~Ll~~-GA~VtVvap~   45 (150)
T d1kyqa1          13 DKRILLIGGGEVGLTRLYKLMPT-GCKLTLVSPD   45 (150)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGGG-TCEEEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCC
Confidence            35799999999999999999999 9999999654

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=92.90  E-value=0.044  Score=43.32  Aligned_cols=33  Identities=27%  Similarity=0.372  Sum_probs=28.8

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      -.|+|+|+|+.|+.++..+... |.+|+++|+.+
T Consensus        28 ~~vlV~G~G~vG~~~~~~ak~~-Ga~vi~v~~~~   60 (170)
T d1e3ja2          28 TTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSP   60 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCH
T ss_pred             CEEEEEcccccchhhHhhHhhh-cccccccchHH
Confidence            4699999999999998877778 99999999764

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.86  E-value=0.039  Score=40.78  Aligned_cols=33  Identities=21%  Similarity=0.323  Sum_probs=30.3

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEecc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~  123 (356)
                      ...|+|||+|..|..-|..|.+. |.+|+++...
T Consensus        12 ~k~vlVvG~G~va~~ka~~ll~~-ga~v~v~~~~   44 (113)
T d1pjqa1          12 DRDCLIVGGGDVAERKARLLLEA-GARLTVNALT   44 (113)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TBEEEEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCeEEEEecc
Confidence            46899999999999999999999 9999999764

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.74  E-value=0.045  Score=42.68  Aligned_cols=34  Identities=35%  Similarity=0.603  Sum_probs=29.1

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCC--eEEEEeccC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQSV  124 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~--~V~llEk~~  124 (356)
                      ...|.|||+|-.|.++|+.|+.. ++  ++.|+|..+
T Consensus         6 ~~KI~IiGaG~vG~~~a~~l~~~-~l~~el~L~Di~~   41 (148)
T d1ldna1           6 GARVVVIGAGFVGASYVFALMNQ-GIADEIVLIDANE   41 (148)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHH-TCCSEEEEECSSH
T ss_pred             CCeEEEECcCHHHHHHHHHHHhc-CCCceEEEEeecc
Confidence            46799999999999999999987 54  799998753

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=92.73  E-value=0.046  Score=39.96  Aligned_cols=34  Identities=18%  Similarity=0.074  Sum_probs=29.0

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .-+|+|||+|.+|+-.|..|++. ..+|+++-+..
T Consensus        32 gK~VlVVG~g~Sa~dia~~l~~~-ak~v~~~~~r~   65 (107)
T d2gv8a2          32 GESVLVVGGASSANDLVRHLTPV-AKHPIYQSLLG   65 (107)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTTT-SCSSEEEECTT
T ss_pred             CCeEEEECCCCCHHHHHHHHHHh-cCEEEEEEecC
Confidence            45899999999999999999998 77877776653

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=92.61  E-value=0.058  Score=42.35  Aligned_cols=35  Identities=14%  Similarity=0.296  Sum_probs=29.9

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCC-CeEEEEeccC
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPN-IQIAIIEQSV  124 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G-~~V~llEk~~  124 (356)
                      ++..|.|||+|..|.++|+.|+.. + .+++|+|...
T Consensus         6 k~~KI~IIGaG~VG~~lA~~l~~~-~~~el~L~D~~~   41 (154)
T d1pzga1           6 RRKKVAMIGSGMIGGTMGYLCALR-ELADVVLYDVVK   41 (154)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHH-TCCEEEEECSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhC-CCceEEEEEecc
Confidence            357899999999999999998887 5 4899998764

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.45  E-value=0.045  Score=44.03  Aligned_cols=31  Identities=26%  Similarity=0.365  Sum_probs=28.6

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEecc
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~  123 (356)
                      .|.|||+|.-|.+.|..|+++ |.+|.+..|.
T Consensus         2 kI~ViGaG~~GtalA~~la~~-g~~V~l~~r~   32 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDN-GNEVRIWGTE   32 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHH-CCEEEEECCG
T ss_pred             EEEEECCCHHHHHHHHHHHHC-CCEEEEEEec
Confidence            589999999999999999999 9999998664

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.40  E-value=0.057  Score=42.82  Aligned_cols=33  Identities=24%  Similarity=0.370  Sum_probs=28.6

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~  124 (356)
                      -.|+|+|+|+.|+.++..|... |. +|+++|+.+
T Consensus        28 d~VlI~G~G~iG~~~~~~a~~~-G~~~Vi~~d~~~   61 (171)
T d1pl8a2          28 HKVLVCGAGPIGMVTLLVAKAM-GAAQVVVTDLSA   61 (171)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCH
T ss_pred             CEEEEECCCccHHHHHHHHHHc-CCceEEeccCCH
Confidence            4699999999999999888888 87 799999764

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=92.14  E-value=0.076  Score=42.18  Aligned_cols=34  Identities=21%  Similarity=0.373  Sum_probs=30.6

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      ..+|+|+|+|.++-++++.|.+. |.++.|+.|..
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~-g~~i~I~nRt~   51 (170)
T d1nyta1          18 GLRILLIGAGGASRGVLLPLLSL-DCAVTITNRTV   51 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSH
T ss_pred             CCEEEEECCcHHHHHHHHHhccc-ceEEEeccchH
Confidence            45899999999999999999999 89999998763

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=92.10  E-value=0.068  Score=41.55  Aligned_cols=34  Identities=26%  Similarity=0.519  Sum_probs=29.6

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCC--CeEEEEeccC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPN--IQIAIIEQSV  124 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G--~~V~llEk~~  124 (356)
                      +..|.|||+|-.|.++|+.|+.+ +  -++.|+|+..
T Consensus         5 ~~KI~IIGaG~VG~~~A~~l~~~-~~~~elvL~D~~~   40 (146)
T d1ez4a1           5 HQKVVLVGDGAVGSSYAFAMAQQ-GIAEEFVIVDVVK   40 (146)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHH-TCCSEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhc-CCCcEEEEeeccc
Confidence            45899999999999999999997 5  4799999763

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.98  E-value=0.079  Score=41.93  Aligned_cols=32  Identities=22%  Similarity=0.323  Sum_probs=28.9

Q ss_pred             cEEEE-CCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           92 DVVVV-GAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        92 DVvII-GgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .|.|| |+|.-|.+.|..|+++ |++|++..|++
T Consensus         2 ki~vigGaG~iG~alA~~la~~-G~~V~l~~R~~   34 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATL-GHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTT-TCEEEEEESSH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHC-CCEEEEEECCH
Confidence            47899 6699999999999999 99999999874

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.87  E-value=0.069  Score=42.20  Aligned_cols=33  Identities=21%  Similarity=0.221  Sum_probs=28.2

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      -.|+|+|+|+.|+.++..+... |.+|++++.++
T Consensus        29 ~~vlI~GaG~vG~~a~q~ak~~-G~~vi~~~~~~   61 (168)
T d1piwa2          29 KKVGIVGLGGIGSMGTLISKAM-GAETYVISRSS   61 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSS
T ss_pred             CEEEEECCCCcchhHHHHhhhc-cccccccccch
Confidence            4699999999999987776667 99999999864

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=91.84  E-value=0.08  Score=41.56  Aligned_cols=32  Identities=25%  Similarity=0.290  Sum_probs=29.4

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .|.|||.|..|.+.|..|.++ |++|+++|+..
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~-g~~V~~~d~~~   33 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRR-GHYLIGVSRQQ   33 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             EEEEEeecHHHHHHHHHHHHC-CCEEEEEECCc
Confidence            489999999999999999999 99999999863

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.67  E-value=0.078  Score=41.65  Aligned_cols=33  Identities=18%  Similarity=0.198  Sum_probs=28.3

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      -.|+|+|+|+.|+.++..+... |.+|+++++.+
T Consensus        29 ~~VlV~GaG~vG~~~~~~ak~~-G~~Vi~~~~~~   61 (166)
T d1llua2          29 QWVAISGIGGLGHVAVQYARAM-GLHVAAIDIDD   61 (166)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCH
T ss_pred             CEEEEeeccccHHHHHHHHHHc-CCccceecchh
Confidence            4699999999999988777668 99999998763

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=91.28  E-value=0.26  Score=36.16  Aligned_cols=34  Identities=21%  Similarity=0.444  Sum_probs=31.3

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS  125 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~  125 (356)
                      +.|.|+|||--|-..|..+.+. |++|.++|....
T Consensus        12 ~kigIlGgGQL~rMla~aA~~l-G~~v~v~d~~~~   45 (111)
T d1kjqa2          12 TRVMLLGSGELGKEVAIECQRL-GVEVIAVDRYAD   45 (111)
T ss_dssp             CEEEEESCSHHHHHHHHHHHTT-TCEEEEEESSTT
T ss_pred             CEEEEEeCCHHHHHHHHHHHHC-CCEEEEEcCCCC
Confidence            5799999999999999999999 999999998754

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=90.77  E-value=0.12  Score=39.84  Aligned_cols=33  Identities=27%  Similarity=0.380  Sum_probs=30.4

Q ss_pred             ccEEEEC-CCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           91 TDVVVVG-AGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIG-gG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      -.|.||| .|..|.+.|..|.++ |++|.++++..
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~~-G~~V~~~d~~~   43 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRAS-GYPISILDRED   43 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTT-TCCEEEECTTC
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHc-CCCcEeccccc
Confidence            3799999 699999999999999 99999999874

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=90.73  E-value=0.14  Score=40.43  Aligned_cols=34  Identities=24%  Similarity=0.635  Sum_probs=30.0

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCC--eEEEEeccC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQSV  124 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~--~V~llEk~~  124 (356)
                      +..|.|||+|-.|.++|+.|..+ ++  ++.|+|...
T Consensus        20 ~~KV~IIGaG~VG~~~A~~l~~~-~l~~ElvLiD~~~   55 (160)
T d1i0za1          20 NNKITVVGVGQVGMACAISILGK-SLADELALVDVLE   55 (160)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHT-TCCSEEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhc-CCCcEEEEEEecc
Confidence            46899999999999999999998 66  799999763

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.52  E-value=0.17  Score=39.77  Aligned_cols=34  Identities=24%  Similarity=0.645  Sum_probs=29.4

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCC--eEEEEeccC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQSV  124 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~--~V~llEk~~  124 (356)
                      +..|.|||+|-.|.++|+.|... ++  +++|+|...
T Consensus        19 ~~KI~IIGaG~VG~~~A~~l~~~-~l~~elvL~D~~~   54 (159)
T d2ldxa1          19 RCKITVVGVGDVGMACAISILLK-GLADELALVDADT   54 (159)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTT-TSCSEEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhc-CCCCEEEEEeCCc
Confidence            45799999999999999999987 55  799998763

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=90.39  E-value=0.11  Score=41.50  Aligned_cols=33  Identities=27%  Similarity=0.307  Sum_probs=27.9

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~  124 (356)
                      -.|+|+|+|+.|+.+...+... |. +|+++|+++
T Consensus        30 ~~VlV~GaG~iG~~~~~~ak~~-Ga~~Vi~~~~~~   63 (182)
T d1vj0a2          30 KTVVIQGAGPLGLFGVVIARSL-GAENVIVIAGSP   63 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TBSEEEEEESCH
T ss_pred             CEEEEECCCccchhheeccccc-cccccccccccc
Confidence            4689999999999988887778 87 799998764

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=89.87  E-value=0.16  Score=39.85  Aligned_cols=33  Identities=21%  Similarity=0.155  Sum_probs=27.9

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      -.|+|+|+|+.|+.++..+... |.++++++...
T Consensus        32 ~~VlI~GaG~vG~~a~qlak~~-Ga~~i~~~~~~   64 (168)
T d1uufa2          32 KKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSE   64 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSG
T ss_pred             CEEEEeccchHHHHHHHHhhcc-cccchhhccch
Confidence            4699999999999988777668 99999998763

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=89.62  E-value=0.15  Score=40.25  Aligned_cols=33  Identities=15%  Similarity=0.379  Sum_probs=29.3

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCC-eEEEEecc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQS  123 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~  123 (356)
                      +..|+|+|+|.++-++++.|.+. |. ++.|+.|.
T Consensus        17 ~~~vlIlGaGGaarai~~aL~~~-g~~~I~I~nR~   50 (167)
T d1npya1          17 NAKVIVHGSGGMAKAVVAAFKNS-GFEKLKIYARN   50 (167)
T ss_dssp             TSCEEEECSSTTHHHHHHHHHHT-TCCCEEEECSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHC-CCCEEEEeccc
Confidence            46899999999999999999998 85 78888776

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=89.48  E-value=0.18  Score=38.87  Aligned_cols=32  Identities=13%  Similarity=0.298  Sum_probs=29.8

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .+||+|.|..|...+..|.+. |.+|+++|..+
T Consensus         5 HiII~G~g~~g~~l~~~L~~~-~~~v~vId~d~   36 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQR-GQNVTVISNLP   36 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT-TCCEEEEECCC
T ss_pred             EEEEECCCHHHHHHHHHHHHc-CCCEEEEeccc
Confidence            599999999999999999999 99999999864

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=89.26  E-value=0.18  Score=40.12  Aligned_cols=32  Identities=28%  Similarity=0.334  Sum_probs=28.2

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCC-CeEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPN-IQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G-~~V~llEk~~  124 (356)
                      -|+|+|+|+.|+.+...+... | .+|+++|..+
T Consensus        32 tVlI~G~GgvGl~ai~~ak~~-G~~~Vi~vd~~~   64 (176)
T d1d1ta2          32 TCVVFGLGGVGLSVIMGCKSA-GASRIIGIDLNK   64 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCG
T ss_pred             EEEEECCCchhHHHHHHHHHc-CCceEEEecCcH
Confidence            499999999999999988888 7 6899999764

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=89.25  E-value=0.16  Score=39.06  Aligned_cols=33  Identities=21%  Similarity=0.296  Sum_probs=27.8

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .|.|||+|-.|.++|+.|+.++-.+++++|...
T Consensus         3 KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~   35 (142)
T d1uxja1           3 KISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCcceEEEEeecc
Confidence            689999999999999999987234899998754

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=89.23  E-value=0.22  Score=38.27  Aligned_cols=32  Identities=25%  Similarity=0.510  Sum_probs=27.8

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCC--eEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~--~V~llEk~~  124 (356)
                      .|.|||+|-.|.++|+.|..+ ++  ++.|+|...
T Consensus         3 KI~IIGaG~VG~~~a~~l~~~-~l~~el~L~D~~~   36 (142)
T d1y6ja1           3 KVAIIGAGFVGASAAFTMALR-QTANELVLIDVFK   36 (142)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT-TCSSEEEEECCC-
T ss_pred             eEEEECCCHHHHHHHHHHHhc-CCCCEEEEEeccC
Confidence            689999999999999999987 55  799999764

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=89.22  E-value=0.17  Score=40.23  Aligned_cols=34  Identities=24%  Similarity=0.294  Sum_probs=28.1

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~  124 (356)
                      .-.|+|+|+|+.|+.++..+... |. +|+++|..+
T Consensus        28 g~~VlI~GaG~vGl~~~q~ak~~-Ga~~Vi~~d~~~   62 (174)
T d1jqba2          28 GSSVVVIGIGAVGLMGIAGAKLR-GAGRIIGVGSRP   62 (174)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHTT-TCSCEEEECCCH
T ss_pred             CCEEEEEcCCcchhhhhhhhhcc-cccccccccchh
Confidence            35799999999999988877777 86 789988763

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=89.14  E-value=0.21  Score=38.27  Aligned_cols=32  Identities=22%  Similarity=0.573  Sum_probs=28.0

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCC--CeEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPN--IQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G--~~V~llEk~~  124 (356)
                      .|.|||+|..|.++|+.|+.. +  -++.|+|..+
T Consensus         2 KI~IIGaG~VG~~la~~l~~~-~l~~el~L~Di~~   35 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEK-QLARELVLLDVVE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCCSEEEEECSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCCceEEEecccc
Confidence            589999999999999999987 5  3799999764

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=88.97  E-value=0.21  Score=38.39  Aligned_cols=33  Identities=27%  Similarity=0.530  Sum_probs=28.2

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCC--eEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~--~V~llEk~~  124 (356)
                      ..|.|||+|..|.++|+.|..+ ++  +++|+|..+
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~-~l~~ElvL~D~~~   36 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQR-GIAREIVLEDIAK   36 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhc-CCCcEEEEEEecc
Confidence            3699999999999999999987 55  788988653

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=88.94  E-value=0.19  Score=40.55  Aligned_cols=31  Identities=29%  Similarity=0.411  Sum_probs=27.5

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .|.|||.|-.|+.+|..++ + |.+|+.+|-+.
T Consensus         2 kI~ViGlG~vGl~~a~~~a-~-g~~V~g~Din~   32 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLLS-L-QNEVTIVDILP   32 (196)
T ss_dssp             EEEEECCSHHHHHHHHHHT-T-TSEEEEECSCH
T ss_pred             EEEEECCChhHHHHHHHHH-C-CCcEEEEECCH
Confidence            4899999999999999886 6 89999999764

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=88.91  E-value=0.012  Score=49.47  Aligned_cols=36  Identities=25%  Similarity=0.210  Sum_probs=33.0

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPG  127 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~G  127 (356)
                      ..|+|||||..|+-+|..|++. |.+|+|+++.+...
T Consensus       181 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtli~r~~~~~  216 (233)
T d1djqa3         181 APRLIADATFTGHRVAREIEEA-NPQIAIPYKRETIA  216 (233)
T ss_dssp             SCCCHHHHHHHHHHHHHTTTSS-CTTSCCCCCCCCCC
T ss_pred             CceeEecCchHHHHHHHHHHhc-CCceEEEEeccccc
Confidence            5799999999999999999999 99999999987654

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=88.71  E-value=0.23  Score=39.35  Aligned_cols=33  Identities=12%  Similarity=0.390  Sum_probs=30.9

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .+|-|||-|..|...|.+|.++ |++|.+.++..
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~-G~~V~v~dr~~   35 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDH-GFVVCAFNRTV   35 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHT-TCCEEEECSST
T ss_pred             CcEEEEeEhHHHHHHHHHHHHC-CCeEEEEcCCH
Confidence            5799999999999999999999 99999999864

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=88.70  E-value=0.19  Score=40.80  Aligned_cols=33  Identities=24%  Similarity=0.286  Sum_probs=26.5

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEecc
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~  123 (356)
                      -.|+|+|+|+.|+.++..+......+|+++|..
T Consensus        27 ~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~   59 (195)
T d1kola2          27 STVYVAGAGPVGLAAAASARLLGAAVVIVGDLN   59 (195)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESC
T ss_pred             CEEEEECcCHHHHHHHHHHHhhcccceeeeccc
Confidence            479999999999999888776624478888865

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=88.69  E-value=0.17  Score=39.07  Aligned_cols=31  Identities=19%  Similarity=0.432  Sum_probs=26.8

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCC--eEEEEecc
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQS  123 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~--~V~llEk~  123 (356)
                      .|.|||+|-.|.++|+.|..+ +.  +++|+|..
T Consensus         3 KI~IIGaG~VG~~~a~~l~~~-~~~~elvL~Di~   35 (146)
T d1hyha1           3 KIGIIGLGNVGAAVAHGLIAQ-GVADDYVFIDAN   35 (146)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-TCCSEEEEECSS
T ss_pred             eEEEECcCHHHHHHHHHHHhc-CCCceEEEEecc
Confidence            589999999999999999986 54  78888865

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.54  E-value=0.18  Score=39.25  Aligned_cols=32  Identities=13%  Similarity=0.196  Sum_probs=27.5

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEecc
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~  123 (356)
                      -.|+|+|+|+.|+.++..+... |.+|++++..
T Consensus        29 ~~vlv~G~G~iG~~a~~~a~~~-g~~v~~~~~~   60 (168)
T d1rjwa2          29 EWVAIYGIGGLGHVAVQYAKAM-GLNVVAVDIG   60 (168)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHT-TCEEEEECSC
T ss_pred             CEEEEeecccchhhhhHHHhcC-CCeEeccCCC
Confidence            4689999999999988777777 9999998865

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=88.51  E-value=0.25  Score=38.05  Aligned_cols=32  Identities=28%  Similarity=0.512  Sum_probs=27.6

Q ss_pred             cEEEECC-CHHHHHHHHHhhcCCCC--eEEEEeccC
Q 018414           92 DVVVVGA-GSAGLSCAYELSKNPNI--QIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGg-G~aGl~aA~~La~~~G~--~V~llEk~~  124 (356)
                      .|.|||+ |..|.++|+.|+.+ +.  ++.|+|...
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~-~l~~el~L~D~~~   36 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKE-PFMKDLVLIGREH   36 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTC-TTCCEEEEEECGG
T ss_pred             EEEEECCCChHHHHHHHHHHhC-Ccccccccccchh
Confidence            5899996 99999999999998 64  889998763

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=88.45  E-value=0.23  Score=39.46  Aligned_cols=33  Identities=24%  Similarity=0.309  Sum_probs=27.3

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~  124 (356)
                      -.|+|+|+|+.|+.++..+... |. +|++.|..+
T Consensus        30 ~~VlV~G~G~iGl~a~~~ak~~-Ga~~Vi~~d~~~   63 (174)
T d1e3ia2          30 STCAVFGLGCVGLSAIIGCKIA-GASRIIAIDING   63 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCG
T ss_pred             CEEEEECCChHHHHHHHHHHHh-CCceeeeeccch
Confidence            4699999999999999888888 87 577777653

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.95  E-value=1.1  Score=36.55  Aligned_cols=34  Identities=24%  Similarity=0.311  Sum_probs=26.7

Q ss_pred             ccEEEECCCHHHHHHHHHhh--------------------cCCCCeEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELS--------------------KNPNIQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La--------------------~~~G~~V~llEk~~  124 (356)
                      -.|+|||+|-.++=+|..|.                    +.+-.+|.++-|..
T Consensus        40 k~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg   93 (216)
T d1lqta1          40 ARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRG   93 (216)
T ss_dssp             SEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSC
T ss_pred             ceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECC
Confidence            47999999999999998776                    34134688887764

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=87.32  E-value=0.19  Score=37.81  Aligned_cols=41  Identities=15%  Similarity=0.191  Sum_probs=30.1

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeE-EEEeccCCCCCcc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQI-AIIEQSVSPGGGA  130 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V-~llEk~~~~Gg~~  130 (356)
                      ++.|+|+|+|-+|...+.++.+..++++ ..+|-.+..-|..
T Consensus         3 ~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~~   44 (126)
T d2dt5a2           3 KWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGRP   44 (126)
T ss_dssp             CEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCE
T ss_pred             CceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHhcCCE
Confidence            5789999999999998887765447774 6777665443433

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=87.20  E-value=0.31  Score=38.25  Aligned_cols=33  Identities=18%  Similarity=0.299  Sum_probs=27.0

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .|+|+|+|+.|+.++..++...+.+|+.+++.+
T Consensus        31 ~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~   63 (175)
T d1cdoa2          31 TCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNP   63 (175)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             EEEEEecCCccchHHHHHHHHhhchheeecchH
Confidence            488999999999999988887355788888764

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=86.61  E-value=0.26  Score=39.00  Aligned_cols=34  Identities=21%  Similarity=0.387  Sum_probs=30.2

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      ...|+|+|+|.++-++++.|.+. +.+|.|+-|..
T Consensus        18 ~k~vlIlGaGGaarai~~aL~~~-~~~i~I~nR~~   51 (171)
T d1p77a1          18 NQHVLILGAGGATKGVLLPLLQA-QQNIVLANRTF   51 (171)
T ss_dssp             TCEEEEECCSHHHHTTHHHHHHT-TCEEEEEESSH
T ss_pred             CCEEEEECCcHHHHHHHHHHccc-CceeeeccchH
Confidence            35799999999999999999987 88999998873

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=86.26  E-value=0.37  Score=32.93  Aligned_cols=32  Identities=19%  Similarity=0.160  Sum_probs=29.5

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      -|.|+|+|--|-+.+..+.+. |++|.+++...
T Consensus         3 ~vgIlG~GQLgrMl~~Aa~~L-G~~v~vldp~~   34 (78)
T d3etja2           3 QVCVLGNGQLGRMLRQAGEPL-GIAVWPVGLDA   34 (78)
T ss_dssp             EEEEEBCSHHHHHHHHHHGGG-TEEEEEECTTS
T ss_pred             EEEEEcCCHHHHHHHHHHHHc-CCEEEEEcCCC
Confidence            489999999999999999999 99999999764

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=85.78  E-value=0.42  Score=37.78  Aligned_cols=33  Identities=39%  Similarity=0.700  Sum_probs=28.7

Q ss_pred             CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEecc
Q 018414           89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (356)
Q Consensus        89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~  123 (356)
                      +...|+|+|+|.++-++++.|.+. + +|.|+-|.
T Consensus        17 ~~k~vlIlGaGG~arai~~aL~~~-~-~i~I~nR~   49 (177)
T d1nvta1          17 KDKNIVIYGAGGAARAVAFELAKD-N-NIIIANRT   49 (177)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHTSS-S-EEEEECSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHccc-c-ceeeehhh
Confidence            356899999999999999999877 6 89998876

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=85.36  E-value=0.42  Score=38.23  Aligned_cols=34  Identities=18%  Similarity=0.374  Sum_probs=29.9

Q ss_pred             cccEEEEC-CCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           90 DTDVVVVG-AGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        90 ~~DVvIIG-gG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .-.++|.| +|..|..+|..|+++ |.+|+++.|+.
T Consensus        23 gK~vlItGasgGIG~~ia~~la~~-G~~V~~~~r~~   57 (191)
T d1luaa1          23 GKKAVVLAGTGPVGMRSAALLAGE-GAEVVLCGRKL   57 (191)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhh-ccchhhcccch
Confidence            35688888 599999999999999 99999999874

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=85.36  E-value=0.44  Score=37.42  Aligned_cols=33  Identities=21%  Similarity=0.260  Sum_probs=27.6

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      -|+|+|+|..|+.++..++...+.+|++++.++
T Consensus        31 tVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~   63 (176)
T d2jhfa2          31 TCAVFGLGGVGLSVIMGCKAAGAARIIGVDINK   63 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             EEEEECCCCcHHHHHHHHHHcCCceEEeecCcH
Confidence            489999999999999999888246888888764

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=85.07  E-value=0.38  Score=37.39  Aligned_cols=32  Identities=19%  Similarity=0.308  Sum_probs=29.7

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .|-|||-|..|...|..|.++ |++|.+.++..
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~-G~~V~~~d~~~   33 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKA-GYSLVVSDRNP   33 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             EEEEEehhHHHHHHHHHHHHC-CCeEEEEeCCc
Confidence            489999999999999999999 99999999864

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=85.05  E-value=0.43  Score=36.58  Aligned_cols=31  Identities=23%  Similarity=0.465  Sum_probs=26.2

Q ss_pred             cEEEECC-CHHHHHHHHHhhcCCCC--eEEEEecc
Q 018414           92 DVVVVGA-GSAGLSCAYELSKNPNI--QIAIIEQS  123 (356)
Q Consensus        92 DVvIIGg-G~aGl~aA~~La~~~G~--~V~llEk~  123 (356)
                      .|.|||+ |..|.++|+.|+.+ ++  +++|+|..
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~-~~~~elvLiDi~   35 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNS-PLVSRLTLYDIA   35 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTC-TTCSEEEEEESS
T ss_pred             eEEEECCCChHHHHHHHHHHhC-CccceEEEEecc
Confidence            4899996 99999999999987 54  58888864

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.90  E-value=0.39  Score=37.40  Aligned_cols=32  Identities=19%  Similarity=0.343  Sum_probs=29.9

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .|-|||-|..|...|.+|.++ |++|.+.++..
T Consensus         3 kIg~IGlG~MG~~iA~~L~~~-g~~v~~~d~~~   34 (162)
T d3cuma2           3 QIAFIGLGHMGAPMATNLLKA-GYLLNVFDLVQ   34 (162)
T ss_dssp             EEEEECCSTTHHHHHHHHHHT-TCEEEEECSSH
T ss_pred             EEEEEEEHHHHHHHHHHHHHC-CCeEEEEECch
Confidence            489999999999999999999 99999999864

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=84.86  E-value=0.59  Score=36.04  Aligned_cols=34  Identities=18%  Similarity=0.243  Sum_probs=27.9

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      ..|.|||+|..|.++|+.|.+++=.++.|+|...
T Consensus         4 ~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~   37 (150)
T d1t2da1           4 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   37 (150)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccC
Confidence            5799999999999999988887224788888753

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.81  E-value=0.38  Score=36.81  Aligned_cols=32  Identities=28%  Similarity=0.385  Sum_probs=27.0

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCC--eEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~--~V~llEk~~  124 (356)
                      .|.|||+|-.|.++|+.|+.+ +.  ++.|+|...
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~-~~~~elvL~Di~~   35 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLN-LDVDEIALVDIAE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-SCCSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhc-CcCceEEEEeccc
Confidence            589999999999999999976 43  688998653

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=84.70  E-value=0.49  Score=37.20  Aligned_cols=32  Identities=28%  Similarity=0.534  Sum_probs=29.8

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .|-|||-|..|...|.+|.++ |++|.+.++..
T Consensus         3 kIGvIGlG~MG~~ma~~L~~~-G~~V~~~dr~~   34 (178)
T d1pgja2           3 DVGVVGLGVMGANLALNIAEK-GFKVAVFNRTY   34 (178)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT-TCCEEEECSSH
T ss_pred             EEEEEeehHHHHHHHHHHHHC-CCeEEEEECCH
Confidence            589999999999999999999 99999999763

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=84.59  E-value=0.61  Score=36.98  Aligned_cols=34  Identities=18%  Similarity=0.329  Sum_probs=29.1

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~  124 (356)
                      ...|+|+|+|.++-++++.|.+. |. ++.|+.|..
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~-g~~~i~i~nR~~   52 (182)
T d1vi2a1          18 GKTMVLLGAGGASTAIGAQGAIE-GLKEIKLFNRRD   52 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEECSS
T ss_pred             CCEEEEECCcHHHHHHHHHHhhc-CCceEeeeccch
Confidence            35899999999999999999998 55 788888764

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=84.42  E-value=0.38  Score=37.95  Aligned_cols=32  Identities=19%  Similarity=0.239  Sum_probs=26.9

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~  124 (356)
                      .|+|+|+|+.|+.+...+... |. +|+++|..+
T Consensus        30 ~VlV~GaGgvGl~a~~~ak~~-G~~~Vi~~d~~~   62 (174)
T d1p0fa2          30 TCAVFGLGGVGFSAIVGCKAA-GASRIIGVGTHK   62 (174)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-TCSEEEEECSCG
T ss_pred             EEEEECCCchhHHHHHHHHHc-CCceeeccCChH
Confidence            599999999999999888877 65 788888763

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=84.19  E-value=0.51  Score=36.70  Aligned_cols=32  Identities=28%  Similarity=0.362  Sum_probs=27.5

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCC--eEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~--~V~llEk~~  124 (356)
                      .|.|||.|..|.+.|..|.+. |.  +|..+|++.
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~-g~~~~I~~~D~~~   36 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRS-GFKGKIYGYDINP   36 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHT-TCCSEEEEECSCH
T ss_pred             EEEEEccCHHHHHHHHHHHhc-CCCeEEEEEECCh
Confidence            489999999999999999987 64  778888763

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=83.99  E-value=0.38  Score=40.15  Aligned_cols=34  Identities=21%  Similarity=0.500  Sum_probs=29.9

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV  124 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~  124 (356)
                      +..|+|||+|..|..+|..|++. |. +++|+|...
T Consensus        30 ~~~VliiG~GglGs~va~~La~~-Gvg~i~lvD~D~   64 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLASA-GVGNLTLLDFDT   64 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHH-TCSEEEEECCCB
T ss_pred             CCCEEEECCCHHHHHHHHHHHHc-CCCeEEEECCcc
Confidence            46899999999999999999998 76 788888653

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=83.22  E-value=0.47  Score=36.11  Aligned_cols=31  Identities=26%  Similarity=0.479  Sum_probs=26.4

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCC--CeEEEEecc
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPN--IQIAIIEQS  123 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G--~~V~llEk~  123 (356)
                      .|.|||+|..|.++|+.|+.+ +  -++.|+|..
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~-~l~~el~L~Di~   34 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMK-GFAREMVLIDVD   34 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-TCCSEEEEECSS
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCCCEEEEEecc
Confidence            589999999999999998886 4  478888865

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=82.75  E-value=0.41  Score=37.69  Aligned_cols=33  Identities=24%  Similarity=0.325  Sum_probs=25.3

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeE-EEEecc
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQI-AIIEQS  123 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V-~llEk~  123 (356)
                      .-.|+|+|+|+.|+.++..+... |.++ ++.+..
T Consensus        29 g~~VlI~G~G~iG~~~~~~ak~~-g~~~v~~~~~~   62 (174)
T d1f8fa2          29 ASSFVTWGAGAVGLSALLAAKVC-GASIIIAVDIV   62 (174)
T ss_dssp             TCEEEEESCSHHHHHHHHHHHHH-TCSEEEEEESC
T ss_pred             CCEEEEeCCCHHHhhhhhccccc-ccceeeeeccH
Confidence            34699999999999999877777 6655 455544

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=82.07  E-value=0.42  Score=38.78  Aligned_cols=34  Identities=21%  Similarity=0.478  Sum_probs=29.5

Q ss_pred             cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .-+|+|||+|.+|.-+|..+++. +.+++++=+..
T Consensus        32 gK~V~VvG~G~Sa~dia~~~~~~-~~~~~~~~~~~   65 (235)
T d1w4xa2          32 GQRVGVIGTGSSGIQVSPQIAKQ-AAELFVFQRTP   65 (235)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHH-BSEEEEEESSC
T ss_pred             CCEEEEECCCccHHHHHHHHHhh-hcccccccccc
Confidence            35899999999999999999998 88888776654

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=81.42  E-value=0.58  Score=36.58  Aligned_cols=33  Identities=18%  Similarity=0.239  Sum_probs=25.7

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEecc
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS  123 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~  123 (356)
                      -.|+|+|+|+.|+.++..+......+|+++++.
T Consensus        34 ~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~   66 (172)
T d1h2ba2          34 AYVAIVGVGGLGHIAVQLLKVMTPATVIALDVK   66 (172)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred             CEEEEeCCChHHHHHHHHHHhhcCcccccccch
Confidence            469999999999998887776623566777765

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=81.07  E-value=0.72  Score=35.23  Aligned_cols=32  Identities=16%  Similarity=0.226  Sum_probs=29.0

Q ss_pred             cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      .|.|||.|..|...|..|.++ |++|++.++..
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~-g~~v~~~~~~~   33 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSR-GVEVVTSLEGR   33 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHT-TCEEEECCTTC
T ss_pred             EEEEEcHHHHHHHHHHHHHHC-CCeEEEEcCch
Confidence            489999999999999999999 99999988654

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.44  E-value=0.81  Score=35.79  Aligned_cols=33  Identities=30%  Similarity=0.402  Sum_probs=30.7

Q ss_pred             ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414           91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV  124 (356)
Q Consensus        91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~  124 (356)
                      ..|+|||-|-.|-.+|..|... |.+|++.|..+
T Consensus        25 k~v~V~GyG~iG~g~A~~~rg~-G~~V~v~e~dp   57 (163)
T d1li4a1          25 KVAVVAGYGDVGKGCAQALRGF-GARVIITEIDP   57 (163)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             CEEEEeccccccHHHHHHHHhC-CCeeEeeeccc
Confidence            4799999999999999999999 99999999874

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=80.06  E-value=0.9  Score=34.62  Aligned_cols=31  Identities=29%  Similarity=0.663  Sum_probs=25.9

Q ss_pred             cEEEEC-CCHHHHHHHHHhhcCCCC--eEEEEecc
Q 018414           92 DVVVVG-AGSAGLSCAYELSKNPNI--QIAIIEQS  123 (356)
Q Consensus        92 DVvIIG-gG~aGl~aA~~La~~~G~--~V~llEk~  123 (356)
                      .|.||| +|..|.++|+.|..+ +.  ++.|+|..
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~-~l~~el~L~Di~   35 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALR-DIADEVVFVDIP   35 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHT-TCCSEEEEECCG
T ss_pred             eEEEECCCCcHHHHHHHHHHhC-CCCCEEEEEecC
Confidence            589999 699999999999987 44  68888853