Citrus Sinensis ID: 018436

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350------
MCAFVYVSFWQFDKLTLVWGKPRQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICAGENGAASIPPGTPPSLPIDNGLLYSQQEDEVL
ccccccccccccccccccccccccccccHHHHHHccccccccccHHHHHHHHccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHccccccEEEHHHHHHHHHHHcccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccc
ccccEccccHHcccccccccccccccccHHHHHHHccccccEccHHHHHHHHHHccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccc
MCAFVYVSFWQfdkltlvwgkprqpplgseewttfldnegrvmdsnALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRerkglidkdvvrtdrsvtffdgddnpnvHLLRDILLTYSFynfdlgycqgmsdllsPILFVMEDESQSFWCFVALMERlgpnfnrdqngmhSQLFALSKLVElldnplhnyfkqndclnyfFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICagengaasippgtppslpidngllysqqedevl
MCAFVYVSFWQFDKLTLVWGKPRQPPLgseewttfldnegrvmdsnaLRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIkrqwqsispeqarrftkfrerkglidkdvvrtdrsvtffdgddnpnvHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICAGENGAASIPPGTPPSLPIDNGllysqqedevl
MCAFVYVSFWQFDKLTLVWGKPRQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICAGENGAASIPPGTPPSLPIDNGLLYSQQEDEVL
*CAFVYVSFWQFDKLTLVWGKPRQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSI*****RRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICAGEN*****************************
**A*VY*SF**********************WTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICA********************************
MCAFVYVSFWQFDKLTLVWGKPRQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICAGENGAASIPPGTPPSLPIDNGLLYSQQEDEVL
*CAFVYVSFWQFDKLTL*****RQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICAGENGAASIPP**********************
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MCAFVYVSFWQFDKLTLVWGKPRQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICAGENGAASIPPGTPPSLPIDNGLLYSQQEDEVL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query356 2.2.26 [Sep-21-2011]
Q8TC07691 TBC1 domain family member yes no 0.842 0.434 0.48 4e-82
Q9CXF4671 TBC1 domain family member yes no 0.842 0.447 0.473 1e-81
Q8BYH7645 TBC1 domain family member no no 0.837 0.462 0.463 5e-70
Q9HA65648 TBC1 domain family member no no 0.837 0.459 0.459 2e-67
P09379730 GTPase-activating protein yes no 0.831 0.405 0.413 1e-62
Q8TBP0767 TBC1 domain family member no no 0.817 0.379 0.424 3e-60
Q9UUH7743 GTPase-activating protein yes no 0.862 0.413 0.406 2e-59
Q6BU76757 GTPase-activating protein yes no 0.837 0.393 0.352 5e-54
Q6FWI1745 GTPase-activating protein yes no 0.842 0.402 0.345 2e-52
P48365746 GTPase-activating protein yes no 0.817 0.390 0.358 7e-52
>sp|Q8TC07|TBC15_HUMAN TBC1 domain family member 15 OS=Homo sapiens GN=TBC1D15 PE=1 SV=2 Back     alignment and function desciption
 Score =  305 bits (781), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 144/300 (48%), Positives = 207/300 (69%)

Query: 23  RQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAER 82
           R+ P+  EEWT  +D+EGR+++ + +++ IF GG+ H LR++ W FLLGY+ +DST  ER
Sbjct: 313 RREPVSLEEWTKNIDSEGRILNVDNMKQMIFRGGLSHALRKQAWKFLLGYFPWDSTKEER 372

Query: 83  EYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPN 142
             L+  K  EY  +K QW+SIS EQ +R ++ R+ + LI+KDV RTDR+  F++G DNP 
Sbjct: 373 TQLQKQKTDEYFRMKLQWKSISQEQEKRNSRLRDYRSLIEKDVNRTDRTNKFYEGQDNPG 432

Query: 143 VHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRDQ 202
           + LL DIL+TY  Y+FDLGY QGMSDLLSP+L+VME+E  +FWCF + M+++  NF    
Sbjct: 433 LILLHDILMTYCMYDFDLGYVQGMSDLLSPLLYVMENEVDAFWCFASYMDQMHQNFEEQM 492

Query: 203 NGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVL 262
            GM +QL  LS L+ LLD+   +Y +  D    +FCFRW+LI+FKREF +   +RLWEV+
Sbjct: 493 QGMKTQLIQLSTLLRLLDSGFCSYLESQDSGYLYFCFRWLLIRFKREFSFLDILRLWEVM 552

Query: 263 WTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCI 322
           WT     + HL +C AIL+  + +IM +   F+ +LK INELS +ID++ IL  AEA+ +
Sbjct: 553 WTELPCTNFHLLLCCAILESEKQQIMEKHYGFNEILKHINELSMKIDVEDILCKAEAISL 612
Acts as a GTPase activating protein for RAB7A. Does not act on RAB4, RAB5 or RAB6.
Homo sapiens (taxid: 9606)
>sp|Q9CXF4|TBC15_MOUSE TBC1 domain family member 15 OS=Mus musculus GN=Tbc1d15 PE=1 SV=1 Back     alignment and function description
>sp|Q8BYH7|TBC17_MOUSE TBC1 domain family member 17 OS=Mus musculus GN=Tbc1d17 PE=2 SV=2 Back     alignment and function description
>sp|Q9HA65|TBC17_HUMAN TBC1 domain family member 17 OS=Homo sapiens GN=TBC1D17 PE=1 SV=2 Back     alignment and function description
>sp|P09379|GYP7_YARLI GTPase-activating protein GYP7 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=GYP7 PE=3 SV=2 Back     alignment and function description
>sp|Q8TBP0|TBC16_HUMAN TBC1 domain family member 16 OS=Homo sapiens GN=TBC1D16 PE=2 SV=1 Back     alignment and function description
>sp|Q9UUH7|GYP7_SCHPO GTPase-activating protein gyp7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gyp7 PE=3 SV=1 Back     alignment and function description
>sp|Q6BU76|GYP7_DEBHA GTPase-activating protein GYP7 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=GYP7 PE=3 SV=2 Back     alignment and function description
>sp|Q6FWI1|GYP7_CANGA GTPase-activating protein GYP7 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=GYP7 PE=3 SV=1 Back     alignment and function description
>sp|P48365|GYP7_YEAST GTPase-activating protein GYP7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GYP7 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query356
225445585 657 PREDICTED: GTPase-activating protein gyp 0.963 0.522 0.889 0.0
297738991 684 unnamed protein product [Vitis vinifera] 0.985 0.513 0.871 0.0
255572477 645 conserved hypothetical protein [Ricinus 0.969 0.534 0.887 0.0
224087100 487 predicted protein [Populus trichocarpa] 0.969 0.708 0.882 0.0
356548490 656 PREDICTED: TBC1 domain family member 15- 0.971 0.527 0.847 0.0
449443057 655 PREDICTED: TBC1 domain family member 15- 0.969 0.526 0.852 1e-179
356562977 655 PREDICTED: TBC1 domain family member 15- 0.988 0.537 0.832 1e-179
357478201 666 TBC1 domain family member [Medicago trun 0.971 0.519 0.841 1e-179
297792599 674 hypothetical protein ARALYDRAFT_495330 [ 0.963 0.508 0.822 1e-176
186531517 673 RabGAP/TBC domain-containing protein [Ar 0.963 0.509 0.816 1e-175
>gi|225445585|ref|XP_002285365.1| PREDICTED: GTPase-activating protein gyp7-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  662 bits (1707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 305/343 (88%), Positives = 331/343 (96%)

Query: 11  QFDKLTLVWGKPRQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLL 70
           +FDKL LVWGKPRQPPLGSEEW TFLD+EGR+MDS ALRKRIFYGG++H LR+EVW FLL
Sbjct: 313 EFDKLALVWGKPRQPPLGSEEWATFLDSEGRIMDSKALRKRIFYGGIEHSLRKEVWTFLL 372

Query: 71  GYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDR 130
           GY+AYDST AEREYL  IKKSEYE +K+QWQSISPEQA+RFTKFRERKGLI+KDVVRTDR
Sbjct: 373 GYHAYDSTSAEREYLVSIKKSEYETVKQQWQSISPEQAKRFTKFRERKGLIEKDVVRTDR 432

Query: 131 SVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVAL 190
           S++F+DGDDNPNV+LLRDILLTYSFYNFDLGYCQGMSDLLSPILFVM+DE++SFWCFVAL
Sbjct: 433 SLSFYDGDDNPNVYLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMKDEAESFWCFVAL 492

Query: 191 MERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREF 250
           MERLGPNFNRDQNGMH+QLFA+SKLVELLD+PLHNYFKQNDCLNYFFCFRWVLIQFKREF
Sbjct: 493 MERLGPNFNRDQNGMHTQLFAISKLVELLDSPLHNYFKQNDCLNYFFCFRWVLIQFKREF 552

Query: 251 EYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDL 310
           EYEKTM+LWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSG+IDL
Sbjct: 553 EYEKTMKLWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGQIDL 612

Query: 311 DAILRDAEALCICAGENGAASIPPGTPPSLPIDNGLLYSQQED 353
           DA LRDAEALCICAGENGAA+IPPGTPPSLPID+GLL  QQ+D
Sbjct: 613 DATLRDAEALCICAGENGAANIPPGTPPSLPIDSGLLCPQQDD 655

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297738991|emb|CBI28236.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255572477|ref|XP_002527173.1| conserved hypothetical protein [Ricinus communis] gi|223533438|gb|EEF35186.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224087100|ref|XP_002308065.1| predicted protein [Populus trichocarpa] gi|222854041|gb|EEE91588.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356548490|ref|XP_003542634.1| PREDICTED: TBC1 domain family member 15-like [Glycine max] Back     alignment and taxonomy information
>gi|449443057|ref|XP_004139297.1| PREDICTED: TBC1 domain family member 15-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356562977|ref|XP_003549744.1| PREDICTED: TBC1 domain family member 15-like [Glycine max] Back     alignment and taxonomy information
>gi|357478201|ref|XP_003609386.1| TBC1 domain family member [Medicago truncatula] gi|355510441|gb|AES91583.1| TBC1 domain family member [Medicago truncatula] Back     alignment and taxonomy information
>gi|297792599|ref|XP_002864184.1| hypothetical protein ARALYDRAFT_495330 [Arabidopsis lyrata subsp. lyrata] gi|297310019|gb|EFH40443.1| hypothetical protein ARALYDRAFT_495330 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|186531517|ref|NP_200071.2| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] gi|332008854|gb|AED96237.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query356
DICTYBASE|DDB_G0288811829 DDB_G0288811 "putative GTPase 0.828 0.355 0.501 8.5e-81
UNIPROTKB|F1NBY5667 TBC1D15 "Uncharacterized prote 0.837 0.446 0.486 1.4e-78
ZFIN|ZDB-GENE-041111-251664 tbc1d15 "TBC1 domain family, m 0.842 0.451 0.486 2.1e-77
UNIPROTKB|F1PGI0682 TBC1D15 "Uncharacterized prote 0.842 0.439 0.473 2.7e-77
UNIPROTKB|J9NYJ6674 TBC1D15 "Uncharacterized prote 0.842 0.445 0.473 2.7e-77
UNIPROTKB|A8K8E1445 TBC1D15 "TBC1 domain family, m 0.842 0.674 0.48 2.7e-77
UNIPROTKB|J3KNI9682 TBC1D15 "TBC1 domain family me 0.842 0.439 0.48 2.7e-77
UNIPROTKB|Q8TC07691 TBC1D15 "TBC1 domain family me 0.842 0.434 0.48 2.7e-77
UNIPROTKB|F1SH24674 TBC1D15 "Uncharacterized prote 0.842 0.445 0.473 2.7e-77
UNIPROTKB|F1N090675 TBC1D15 "Uncharacterized prote 0.842 0.444 0.473 3.4e-77
DICTYBASE|DDB_G0288811 DDB_G0288811 "putative GTPase activating protein (GAP)" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
 Score = 811 (290.5 bits), Expect = 8.5e-81, P = 8.5e-81
 Identities = 153/305 (50%), Positives = 220/305 (72%)

Query:    26 PLGSEEWTTFLDNEGRVMDSNA--LRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAERE 83
             P+   EW ++ D+EGR+  +N   L K+IFYGG++  +R+EVW FLLG Y++DSTY+ RE
Sbjct:   498 PMSPSEWYSYFDDEGRICLANQQILLKKIFYGGIEESIRQEVWPFLLGVYSFDSTYSSRE 557

Query:    84 YLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDR-SVTFFDGDD--- 139
              ++  K  +Y+ +KRQW+SIS EQ  RF+K++ RK LI KDV+RTDR    F  G+D   
Sbjct:   558 VVKYEKTQQYQTVKRQWESISCEQESRFSKYQSRKLLIQKDVIRTDRLHPMFIQGEDDID 617

Query:   140 -NPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVM---EDESQSFWCFVALMERLG 195
              N N+ L+RD+LLTYSF+NFD+GY QGMSDLLSPI+ VM     E + FWCF  LM+RL 
Sbjct:   618 SNENLRLMRDVLLTYSFFNFDIGYVQGMSDLLSPIISVMGGVSKEVECFWCFKGLMDRLE 677

Query:   196 PNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKT 255
              NF++DQNGMH QL  LSKL++ +D  L+ + + N+  N +F F+ VLI FKREF +   
Sbjct:   678 SNFHKDQNGMHHQLSTLSKLLKFIDLELYTHLEANNGGNMYFFFQSVLICFKREFPFHDV 737

Query:   256 MRLWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILR 315
             + LWE+LW++Y++++L +++C++IL + RN+I+ E M FD +LK INE + R+DL+ IL 
Sbjct:   738 LTLWEILWSNYMTKNLPIFMCLSILIKERNQILDENMAFDQILKLINEKANRMDLEDILV 797

Query:   316 DAEAL 320
             DAE++
Sbjct:   798 DAESM 802
GO:0032851 "positive regulation of Rab GTPase activity" evidence=IEA;ISS
GO:0032313 "regulation of Rab GTPase activity" evidence=IEA
GO:0005622 "intracellular" evidence=IEA
GO:0005097 "Rab GTPase activator activity" evidence=IEA;ISS
GO:0008150 "biological_process" evidence=ND
UNIPROTKB|F1NBY5 TBC1D15 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041111-251 tbc1d15 "TBC1 domain family, member 15" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1PGI0 TBC1D15 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9NYJ6 TBC1D15 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|A8K8E1 TBC1D15 "TBC1 domain family, member 15, isoform CRA_d" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|J3KNI9 TBC1D15 "TBC1 domain family member 15" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q8TC07 TBC1D15 "TBC1 domain family member 15" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SH24 TBC1D15 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1N090 TBC1D15 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
grail3.0023001602
SubName- Full=Putative uncharacterized protein; (487 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query356
smart00164216 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16 6e-54
pfam00566206 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain 5e-49
COG5210496 COG5210, COG5210, GTPase-activating protein [Gener 2e-42
>gnl|CDD|214540 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information 
 Score =  176 bits (448), Expect = 6e-54
 Identities = 76/237 (32%), Positives = 110/237 (46%), Gaps = 22/237 (9%)

Query: 53  FYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFT 112
              GV   LR  VW  LL     D             K  Y  + ++  +   +      
Sbjct: 1   VRKGVPPSLRGVVWKLLLNAQPMD---------TSADKDLYSRLLKET-APDDKSIVHQ- 49

Query: 113 KFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSP 172
                   I+KD+ RT    +FF   + P    LR +L  Y+ YN ++GYCQGM+ L +P
Sbjct: 50  --------IEKDLRRTFPEHSFFQDKEGPGQESLRRVLKAYALYNPEVGYCQGMNFLAAP 101

Query: 173 ILFVMEDESQSFWCFVALMERLGPNF-NRDQNGMHSQLFALSKLVELLDNPLHNYFKQND 231
           +L VMEDE  +FWC V LMER GPNF   D +G+   L  L +LV+  D  L+ + K   
Sbjct: 102 LLLVMEDEEDAFWCLVKLMERYGPNFYLPDMSGLQLDLLQLDRLVKEYDPDLYKHLKDLG 161

Query: 232 CLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNKIM 288
                +  RW L  F RE   E  +R+W+VL+           V +A+LK +R+ ++
Sbjct: 162 ITPSLYALRWFLTLFARELPLEIVLRIWDVLFAE--GSDFLFRVALALLKLHRDVLL 216

Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases. Length = 216
>gnl|CDD|215997 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain Back     alignment and domain information
>gnl|CDD|227535 COG5210, COG5210, GTPase-activating protein [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 356
KOG4567370 consensus GTPase-activating protein [General funct 100.0
KOG2058436 consensus Ypt/Rab GTPase activating protein [Intra 100.0
KOG2223586 consensus Uncharacterized conserved protein, conta 100.0
KOG1092484 consensus Ypt/Rab-specific GTPase-activating prote 100.0
smart00164199 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable R 100.0
KOG2222 848 consensus Uncharacterized conserved protein, conta 100.0
COG5210496 GTPase-activating protein [General function predic 100.0
PF00566214 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR00 100.0
KOG2224781 consensus Uncharacterized conserved protein, conta 100.0
KOG1093725 consensus Predicted protein kinase (contains TBC a 100.0
KOG4347 671 consensus GTPase-activating protein VRP [General f 99.97
KOG4436948 consensus Predicted GTPase activator NB4S/EVI5 (co 99.97
KOG1091 625 consensus Ypt/Rab-specific GTPase-activating prote 99.97
KOG2197488 consensus Ypt/Rab-specific GTPase-activating prote 99.97
KOG2595395 consensus Predicted GTPase activator protein [Sign 99.95
KOG1102397 consensus Rab6 GTPase activator GAPCenA and relate 99.94
KOG2221267 consensus PDZ-domain interacting protein EPI64, co 99.89
KOG3636 669 consensus Uncharacterized conserved protein, conta 99.76
KOG4436 948 consensus Predicted GTPase activator NB4S/EVI5 (co 99.68
KOG2801 559 consensus Probable Rab-GAPs [Intracellular traffic 99.42
KOG1648813 consensus Uncharacterized conserved protein, conta 99.01
PF149611296 BROMI: Broad-minded protein 97.61
KOG2197 488 consensus Ypt/Rab-specific GTPase-activating prote 96.66
>KOG4567 consensus GTPase-activating protein [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=1.7e-46  Score=326.88  Aligned_cols=289  Identities=28%  Similarity=0.495  Sum_probs=248.8

Q ss_pred             HHHHhccccCCCCCCHHHHHHHHhcCCCC--CchHHHHHHHhhCCCCCCCCHHHHHHHHHHcHHHHHHHHHHhhcCC---
Q 018436           30 EEWTTFLDNEGRVMDSNALRKRIFYGGVD--HKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSIS---  104 (356)
Q Consensus        30 ~~W~~~l~~~~~~~~~~~l~~~~~~~GiP--~~~R~~vW~~llg~~~~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~---  104 (356)
                      +..+.++......++.+++|+ ++..|+|  ..+|+.+|+.+||++|.+.+.+  ...+.+.+..|....++....+   
T Consensus        10 ~~~edvl~~~~~~id~kelr~-~~~~g~p~~~~lR~~~WkllL~Yl~~er~~w--~s~La~~R~~Y~q~i~e~v~epg~~   86 (370)
T KOG4567|consen   10 KSIEDVLNPADDTIDLKELRK-LCFYGVPDDASLRPLVWKLLLGYLPPERSKW--TSFLAKKRSLYKQFIEEIVDEPGKK   86 (370)
T ss_pred             hhHHHhhccccchhhHHHHHH-HhhcCCCCccchhHhHHHHHHhhcChhhhhh--HHHHHHHHHHHHHHHHHhccCcccc
Confidence            456667766666699999998 5589999  5899999999999999887654  7888999999998887532211   


Q ss_pred             ---------------------hHHHHhhhHHHHhhchhhhcccccCCCCcccCCCCC-----------------------
Q 018436          105 ---------------------PEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDN-----------------------  140 (356)
Q Consensus       105 ---------------------~~~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~-----------------------  140 (356)
                                           ...+..+.+.++...||++|+.||+|+..+|+....                       
T Consensus        87 ~~~~~v~~~D~~~dhPls~~~~sdwn~ff~d~e~l~QIdrDvrr~~pdi~ff~~~~~~p~~~~~~~~~~i~~~q~~~~n~  166 (370)
T KOG4567|consen   87 DNSKKVDSNDTDEDHPLSLGPTSDWNTFFKDCEVLLQIDRDVRRTHPDISFFQLASSYPCRQGMDSRRRINASQEAGRNR  166 (370)
T ss_pred             ccccccccCcccccCCCCCCchhhHHHHhhhhHHHHHHHHHHHHhCcchHhhhhccccccccchhhHhhhhhhhHhhhcc
Confidence                                 123444556778899999999999999998875321                       


Q ss_pred             --ccHHHHHHHHHHHhcccCCCCcccchhHHHHHHHHHhh----------ccchhHHHHHHHHHhcCCCCCC----Cchh
Q 018436          141 --PNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVME----------DESQSFWCFVALMERLGPNFNR----DQNG  204 (356)
Q Consensus       141 --~~~~~L~rIL~~~~~~~p~igY~QGm~~i~~~ll~~~~----------~E~~af~~~~~l~~~~~~~f~~----~~~~  204 (356)
                        .......|||..||..||.+||+||||+|+||+++++.          .|+|||+||+.||..++++|..    +..|
T Consensus       167 ~gl~~~~~erilfiyAKLNpGi~YVQGMNEIlaPiYYVfa~Dpd~e~~~~aEaDaFFCF~~LMseirDnf~k~LDdS~~G  246 (370)
T KOG4567|consen  167 LGLTRFAAERILFIYAKLNPGIGYVQGMNEILAPIYYVFANDPDEENRAYAEADAFFCFTQLMSEIRDNFIKTLDDSVGG  246 (370)
T ss_pred             cchhhhHHHHHHHHHhhcCCcchHHhhhHHHhhhhheeeccCCchhhHHhhhhhHHHHHHHHHHHHHHHHHHhccccccc
Confidence              11234579999999999999999999999999999984          2899999999999999988754    3468


Q ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHhCCCCcchhhHHHHHHHhcccCChHHHHHHHHHHHhcccchhHHHHHHHHHHHHhH
Q 018436          205 MHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYR  284 (356)
Q Consensus       205 ~~~~~~~~~~ll~~~~p~L~~hl~~~~i~~~~~~~~W~~tlF~~~l~~~~~~riwD~~l~~~~~~~~l~~~~lail~~~~  284 (356)
                      ++..+..+..+++++|-+||+||++.++.|..|+++|+.+|++++||++++.||||.+|+......+++++|.|||...|
T Consensus       247 I~~~Msr~~~~lk~~D~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~rfd~Ll~iCcsmlil~R  326 (370)
T KOG4567|consen  247 IHFLMSRLSELLKKHDEELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQRFDFLLYICCSMLILVR  326 (370)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhhhHHHHHHHHHHHHHHH
Confidence            88889999999999999999999999999999999999999999999999999999999988778999999999999999


Q ss_pred             HHHhcCCCCHHHHHHHHhccCCCCCHHHHHHHHHHHHHHh
Q 018436          285 NKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICA  324 (356)
Q Consensus       285 ~~ll~~~~d~~~i~~~l~~~~~~~d~~~ll~~A~~l~~~~  324 (356)
                      +.|++.  |+...+++||++| ..|+..++..|.+|+...
T Consensus       327 e~il~~--DF~~nmkLLQ~yp-~tdi~~~l~~A~~Lr~~k  363 (370)
T KOG4567|consen  327 ERILEG--DFTVNMKLLQNYP-TTDISKMLAVADSLRDKK  363 (370)
T ss_pred             HHHHhc--chHHHHHHHhcCC-CCCHHHHHHHHHHHHhcc
Confidence            999965  9999999999998 799999999999998643

>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>COG5210 GTPase-activating protein [General function prediction only] Back     alignment and domain information
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [] Back     alignment and domain information
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only] Back     alignment and domain information
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only] Back     alignment and domain information
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only] Back     alignment and domain information
>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only] Back     alignment and domain information
>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only] Back     alignment and domain information
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only] Back     alignment and domain information
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only] Back     alignment and domain information
>PF14961 BROMI: Broad-minded protein Back     alignment and domain information
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query356
3dzx_A346 Crystal Structure Of The Rabgap Domain Of Human Tbc 6e-20
2qfz_A345 Crystal Structure Of Human Tbc1 Domain Family Membe 7e-17
2g77_A410 Crystal Structure Of Gyp1 Tbc Domain In Complex Wit 8e-15
1fkm_A396 Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p 4e-14
3hzj_A310 Crystal Structure Of The Rabgap Domain Of The Rabga 2e-10
2qq8_A334 Crystal Structure Of The Putative Rabgap Domain Of 1e-08
3qyb_A301 X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rab 4e-08
3qye_A331 Crystal Structure Of Human Tbc1d1 Rabgap Domain Len 1e-07
>pdb|3DZX|A Chain A, Crystal Structure Of The Rabgap Domain Of Human Tbc1d22b Length = 346 Back     alignment and structure 
Iteration: 1

 Score = 94.7 bits (234), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 84/290 (28%), Positives = 133/290 (45%), Gaps = 45/290 (15%)
Query: 44  DSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSI 103
           D + LRK   + GV  ++R   W  L GY   ++    R+     K+ EY     Q+   
Sbjct: 40  DLDELRK-CSWPGVPREVRPITWRLLSGYLPANT--ERRKLTLQRKREEYFGFIEQYYDS 96
Query: 104 SPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVH-LLRDILLTYSFYNFDLGY 162
             E+  + T +R+    I  D+ RT+  +  F     P V  +   IL  ++  +   GY
Sbjct: 97  RNEEHHQDT-YRQ----IHIDIPRTNPLIPLFQ---QPLVQEIFERILFIWAIRHPASGY 148
Query: 163 CQGMSDLLSPIL------FVMED-----------------ESQSFWCFVALMERLGPNFN 199
            QG++DL++P        +V ED                 E+ SFWC   L++ +  N+ 
Sbjct: 149 VQGINDLVTPFFVVFLSEYVEEDVENFDVTNLSQDMLRSIEADSFWCMSKLLDGIQDNYT 208
Query: 200 RDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLW 259
             Q G+  ++ AL +LV  +D  +HN+F++ +     F FRW+     RE     T+RLW
Sbjct: 209 FAQPGIQKKVKALEELVSRIDEQVHNHFRRYEVEYLQFAFRWMNNLLMRELPLRCTIRLW 268
Query: 260 EVLWTHYLSE-----HLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINEL 304
           +     Y SE     H HLYVC A L ++R +I+ E+ DF  LL  +  L
Sbjct: 269 DT----YQSEPEGFSHFHLYVCAAFLIKWRKEILDEE-DFQGLLMLLQNL 313
>pdb|2QFZ|A Chain A, Crystal Structure Of Human Tbc1 Domain Family Member 22a Length = 345 Back     alignment and structure
>pdb|2G77|A Chain A, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 410 Back     alignment and structure
>pdb|1FKM|A Chain A, Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p Length = 396 Back     alignment and structure
>pdb|3HZJ|A Chain A, Crystal Structure Of The Rabgap Domain Of The Rabgap1l Protein Length = 310 Back     alignment and structure
>pdb|2QQ8|A Chain A, Crystal Structure Of The Putative Rabgap Domain Of Human Tbc1 Domain Family Member 14 Length = 334 Back     alignment and structure
>pdb|3QYB|A Chain A, X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rabgap Domain Length = 301 Back     alignment and structure
>pdb|3QYE|A Chain A, Crystal Structure Of Human Tbc1d1 Rabgap Domain Length = 331 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query356
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 7e-82
1fkm_A396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 3e-75
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 5e-45
2qq8_A334 TBC1 domain family member 14; structural genomics 8e-42
3hzj_A310 Rabgap1L, RAB GTPase-activating protein 1-like; st 4e-36
3qye_A331 TBC1 domain family member 1; rabgap, RAB, myocytes 4e-35
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Length = 345 Back     alignment and structure
 Score =  252 bits (644), Expect = 7e-82
 Identities = 73/320 (22%), Positives = 124/320 (38%), Gaps = 43/320 (13%)

Query: 30  EEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIK 89
           +++   L   G   D   LR+  +  G+   +R   W  L GY   +     R      K
Sbjct: 27  DKFKQLL--AGPNTDLEELRRLSW-SGIPKPVRPMTWKLLSGYLPANVD--RRPATLQRK 81

Query: 90  KSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDI 149
           + EY      +     ++       ++    I  D+ R                 +   I
Sbjct: 82  QKEYFAFIEHYYDSRNDEV-----HQDTYRQIHIDIPRMSPEALILQ---PKVTEIFERI 133

Query: 150 LLTYSFYNFDLGYCQGMSDLLSPILFVM------------------------EDESQSFW 185
           L  ++  +   GY QG++DL++P   V                           E+ ++W
Sbjct: 134 LFIWAIRHPASGYVQGINDLVTPFFVVFICEYIEAEEVDTVDVSGVPAEVLCNIEADTYW 193

Query: 186 CFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQ 245
           C   L++ +  N+   Q G+  ++  L +LV  +D  +H +  Q++     F FRW+   
Sbjct: 194 CMSKLLDGIQDNYTFAQPGIQMKVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNNL 253

Query: 246 FKREFEYEKTMRLWEVLWTHYLS-EHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINEL 304
             RE     T+RLW+   +      H HLYVC A L R+R +I+ E+ DF  LL F+  L
Sbjct: 254 LMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEIL-EEKDFQELLLFLQNL 312

Query: 305 SGRI----DLDAILRDAEAL 320
                   D+  +L +A  L
Sbjct: 313 PTAHWDDEDISLLLAEAYRL 332
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Length = 396 Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Length = 294 Back     alignment and structure
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Length = 334 Back     alignment and structure
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Length = 310 Back     alignment and structure
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Length = 331 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query356
2qq8_A334 TBC1 domain family member 14; structural genomics 100.0
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 100.0
1fkm_A396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 100.0
3qye_A331 TBC1 domain family member 1; rabgap, RAB, myocytes 100.0
3hzj_A310 Rabgap1L, RAB GTPase-activating protein 1-like; st 100.0
4hl4_A292 TBC1 domain family member 20; rabgap, RAB1B, hydro 100.0
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 100.0
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=1.1e-53  Score=398.39  Aligned_cols=294  Identities=20%  Similarity=0.346  Sum_probs=239.6

Q ss_pred             CCCCCCCHHHHH-hccccCCCCCCHHHHHHHHhcCCCCCchHHHHHHHhhCCCCCCCCHHHHHHHHHHcHHHHHHHHHHh
Q 018436           22 PRQPPLGSEEWT-TFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQW  100 (356)
Q Consensus        22 ~~~~~l~~~~W~-~~l~~~~~~~~~~~l~~~~~~~GiP~~~R~~vW~~llg~~~~~~~~~~~~~~~~~~~~~Y~~l~~~~  100 (356)
                      .+...-+..+|. .++.+|+...+.+++|+ ++++|||+.+|+.||+.++|+. ...+...+.....+....|..+....
T Consensus        14 ~~~~~~~~~~W~~~il~~w~~~~~~~~lr~-l~~~GIP~~lR~~vW~~llg~~-~~~~~~~y~~ll~~~~~~~~~~~~~~   91 (334)
T 2qq8_A           14 LYFQGNAVLTWNNEILPNWETMWCSRKVRD-LWWQGIPPSVRGKVWSLAIGNE-LNITHELFDICLARAKERWRSLSTGG   91 (334)
T ss_dssp             -CCSSCHHHHHHHTTGGGCC--CCCHHHHH-HHHTCCCHHHHHHHHHHHHCCT-TCCCHHHHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHHHHHHHHhHHhccChHHHHH-HHHCCCCHHHHHHHHHHHhCCc-cccCHHHHHHHHHHHHHHHHHhcccc
Confidence            344445788998 69999988999999998 5589999999999999999985 35556666666655556665554332


Q ss_pred             hcCChHHH-HhhhHHHHhhchhhhcccccCCCCcccCCCCCccHHHHHHHHHHHhcccCCCCcccchhHHHHHHHHHhhc
Q 018436          101 QSISPEQA-RRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMED  179 (356)
Q Consensus       101 ~~~~~~~~-~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~rIL~~~~~~~p~igY~QGm~~i~~~ll~~~~~  179 (356)
                      ...+..+. .......+..++|++||+||+|++++|+.. +++++.|+|||.+|+.+||++|||||||+|||+||+++ +
T Consensus        92 ~~~~~~d~~~~~~~~~~~~~~I~~Dv~RT~p~~~~F~~~-~~~~~~L~rIL~aya~~~p~vgY~QGm~~iaa~lLl~~-~  169 (334)
T 2qq8_A           92 SEVENEDAGFSAADREASLELIKLDISRTFPNLCIFQQG-GPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNL-D  169 (334)
T ss_dssp             ---------------CCHHHHHHHHHHTSSGGGCSSSTT-STTHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHS-C
T ss_pred             ccCcccccccccccchhHHHHHHHHHhhcCCCchhhcCC-CchHHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHhcC-C
Confidence            11111000 000111345679999999999999999863 45789999999999999999999999999999999998 6


Q ss_pred             cchhHHHHHHHHHhcC--CCCCCCchhHHHHHHHHHHHHHhhCHHHHHHHHhCCCCcchhhHHHHHHHhcccCChHHHHH
Q 018436          180 ESQSFWCFVALMERLG--PNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMR  257 (356)
Q Consensus       180 E~~af~~~~~l~~~~~--~~f~~~~~~~~~~~~~~~~ll~~~~p~L~~hl~~~~i~~~~~~~~W~~tlF~~~l~~~~~~r  257 (356)
                      |++|||||+++|++..  ..|..+.+++...+..++.+++.++|+||+||++.|+.+.+|+.+||+|+|++++|++.++|
T Consensus       170 E~~aF~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lr  249 (334)
T 2qq8_A          170 TADAFIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACR  249 (334)
T ss_dssp             HHHHHHHHHHHHTSHHHHHHHSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHhccCCChHHHHHHHHHHHHHHHHHCHHHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHH
Confidence            9999999999998653  35667788999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcccchhHHHHHHHHHHHHhHHHHhcCCCCHHHHHHHHhccCCCCCHHHHHHHHHHHHHH
Q 018436          258 LWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCIC  323 (356)
Q Consensus       258 iwD~~l~~~~~~~~l~~~~lail~~~~~~ll~~~~d~~~i~~~l~~~~~~~d~~~ll~~A~~l~~~  323 (356)
                      |||.++++|  ..+++++|+|++...++.|++.  |+++++++++++|..+|++.++..|.++...
T Consensus       250 iWD~~l~eg--~~~l~~valaiL~~~~~~Ll~~--d~~~il~~L~~lp~~~d~~~l~~~a~~l~~~  311 (334)
T 2qq8_A          250 IWDVFCRDG--EEFLFRTALGILKLFEDILTKM--DFIHMAQFLTRLPEDLPAEELFASIATIQMQ  311 (334)
T ss_dssp             HHHHHHHHC--HHHHHHHHHHHHHHTHHHHHTC--CHHHHHHHHHSCCTTCCHHHHHHHHHHCCCE
T ss_pred             HHHHHHHcC--CHHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHhCCCcCCHHHHHHHHHHccCc
Confidence            999999987  5899999999999999999965  8999999999999889999999999988543
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Back     alignment and structure
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Back     alignment and structure
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Back     alignment and structure
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Back     alignment and structure
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A* Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 356
d1fkma1194 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p { 9e-27
d1fkma2188 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p { 3e-13
d1fkma2188 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p { 1e-05
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 Back     information, alignment and structure

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  103 bits (256), Expect = 9e-27
 Identities = 36/197 (18%), Positives = 71/197 (36%), Gaps = 40/197 (20%)

Query: 30  EEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIK 89
            ++   L ++  +++   LR+   + G+    R  VW  L+GY   ++   E    R  K
Sbjct: 8   SKFDNILKDK-TIINQQDLRQIS-WNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQRKRK 65

Query: 90  KSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDI 149
           +             S +              I+ D+ RT+  +  +      N   L+ I
Sbjct: 66  EYRDSLKHTFSDQHSRD--------IPTWHQIEIDIPRTNPHIPLYQFKSVQNS--LQRI 115

Query: 150 LLTYSFYNFDLGYCQGMSDLLSPILFVM----------------------------EDES 181
           L  ++  +   GY QG++DL++P                                 + E+
Sbjct: 116 LYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEA 175

Query: 182 QSFWCFVALMERLGPNF 198
            +FWC   L+E++  N+
Sbjct: 176 DTFWCLTKLLEQITDNY 192
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 188 Back     information, alignment and structure
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 188 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query356
d1fkma1194 Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha 99.97
d1fkma2188 Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha 99.84
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=6.9e-32  Score=230.23  Aligned_cols=160  Identities=23%  Similarity=0.430  Sum_probs=131.6

Q ss_pred             CHHHHHhccccCCCCCCHHHHHHHHhcCCCCCchHHHHHHHhhCCCCCCCCHHHHHHHHHHcHHHHHHHHHHhhcCChHH
Q 018436           28 GSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQ  107 (356)
Q Consensus        28 ~~~~W~~~l~~~~~~~~~~~l~~~~~~~GiP~~~R~~vW~~llg~~~~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~  107 (356)
                      +-++|.+++++ +..++.++||+. +++|||+.+|+.+|+.++|+++.+.+.  +.....+.+..|............. 
T Consensus         6 ~i~~~~~~l~~-~~~i~~~~lr~l-~~~Gip~~lR~~vW~~llg~~~~~~~~--~~~~~~~~~~~y~~~~~~~~~~~~~-   80 (194)
T d1fkma1           6 RISKFDNILKD-KTIINQQDLRQI-SWNGIPKIHRPVVWKLLIGYLPVNTKR--QEGFLQRKRKEYRDSLKHTFSDQHS-   80 (194)
T ss_dssp             HHHHHHHHHSS-CSBCCHHHHHHH-HTTCCCGGGHHHHHHHHTTCSCSBGGG--HHHHHHHHHHHHHHHHHHTSSSSCS-
T ss_pred             HHHHHHHHhcc-cCCCCHHHHHHH-HHcCCChHHHHHHHHHHHhhcCCchhh--HHHHHHHHhhhhhhhhhhhhhcccc-
Confidence            34689998865 577899999985 589999999999999999999887764  4566677788888877764433221 


Q ss_pred             HHhhhHHHHhhchhhhcccccCCCCcccCCCCCccHHHHHHHHHHHhcccCCCCcccchhHHHHHHHHHhh---------
Q 018436          108 ARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVME---------  178 (356)
Q Consensus       108 ~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~rIL~~~~~~~p~igY~QGm~~i~~~ll~~~~---------  178 (356)
                           ...+..++|++||.||+|++++|..+  ++++.|+|||.+||.+||++|||||||+|||+|+.++.         
T Consensus        81 -----~~~~~~~~I~~Dv~RT~~~~~~f~~~--~~~~~L~rIL~~ya~~np~~gY~QGmn~i~a~ll~v~~~~~~~~~~~  153 (194)
T d1fkma1          81 -----RDIPTWHQIEIDIPRTNPHIPLYQFK--SVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQI  153 (194)
T ss_dssp             -----THHHHHHHHHHHGGGSSTTSGGGGSH--HHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGG
T ss_pred             -----cchHHHHHHHHHHHhcCCcccccccc--hhHHHHHHHHHHHHHHCCCCCeeecchHHHHHHHHHHhhhhhhhhhh
Confidence                 22345679999999999999999864  46899999999999999999999999999999998863         


Q ss_pred             -------------------ccchhHHHHHHHHHhcCCCCC
Q 018436          179 -------------------DESQSFWCFVALMERLGPNFN  199 (356)
Q Consensus       179 -------------------~E~~af~~~~~l~~~~~~~f~  199 (356)
                                         .|++|||||+.+|+++.++|.
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~Ead~F~~f~~lm~~i~d~y~  193 (194)
T d1fkma1         154 DDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYI  193 (194)
T ss_dssp             GGTTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGGGGGGSS
T ss_pred             hhhhhcchhhhhhhhhhhhHHHHHHHHHHHHHHhhhccCC
Confidence                               278999999999998877663
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure