Citrus Sinensis ID: 018457

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-----
Protein Sequence
MDPEAALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSRDGKEFSPIIGFFIDAGPSEVIVRKWDQQEERLVKVSEEEEARYTQAVCSLEFDKQLGPYTLSQYGEWKRLSSYITKSIIERIEPIGGEITVTAESGMMKNTPKSTMERALDEQLKTSKFTASVDSSQKKGCYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKNYGGSEDTLLGELQFAFIAFLMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLKYGLQKDRNGTETGASALLDDSWLSADSFLHHLCKDFFALIQDASVVDGDLLTWVSAKHLCHL
Secondary Structure (PSIPRED)
ccHHHHHHHHHcccEEEEccccccEEEEEEcccccccccccEEEEccccEEEEEEEcccccccccccEEEEEEEcccccEEEEEEEccccccccccHHHHHHHHHHHcHHHHHHccccccHHHHHHHHHHHccccHHHHHHHccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHcccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHcccEEEEEccccccEEEEEEEEEEccccccEEEEccccEEEEEEEEccccccccccccEEEEEcccccEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccHHHHHHHccccccEEEEEcccccccccHHHcHHHHHHHHcccccccccccccccccEEcEcccccccccccHHHHHHHHccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcHHHHHHHcHHHHHHHHHHHHHHHHHcccccccccccccccEEcHHHHccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MDPEAALELVKHGATLllldvpqytlfgidtqmfsvgpsfkgikmippgvhfvfyssssrdgkefspiigffidagpsevIVRKWDQQEERLVKVSEEEEARYTQAVCSLefdkqlgpytlsqygewKRLSSYITKSIIERiepiggeitvtaesgmmkntpkstMERALDEQlktskftasvdssqkkgcyytsiprvvkcrgmqgeeltslnldkTELLESLItknyggsedtLLGELQFAFIAFLMGQSLEAFLQWKSLVSLLfgcseaplhtrsQLFTMFIKVIYYQLKYGlqkdrngtetgasallddswlsADSFLHHLCKDFFALIQDASVVDGDLLTWVSAKHLCHL
Flexible Loop (DISEMBL)
MDPEAALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSRDGKEFSPIIGFFIDAGPSEVIVRKWDQQEERLVKVSEEEEARYTQAVcslefdkqlgpytlsqygewkRLSSYITKSIIERIEPIGGEitvtaesgmmkntpKSTMERALDEQLKtskftasvdssqkkgcyytSIPRVVKCrgmqgeeltslnldktELLESLITKNYGGSEDTLLGELQFAFIAFLMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLKYGLQKDRNGTETGASALLDDSWLSADSFLHHLCKDFFALIQDASVVDGDLLTWVSAKHLCHL
Low Complexity Region (SEG)
MDPEAALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSRDGKEFSPIIGFFIDAGPSEVIVRKWDQQeerlvkvseeeeARYTQAVCSLEFDKQLGPYTLSQYGEWKRLSSYITKSiieriepiggeiTVTAESGMMKNTPKSTMERALDEQLKTSKFTASVDSSQKKGCYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKNYGGSEDTLLGELQFAFIAFLMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLKYGLQKDRNGTETGASALLDDSWLSADSFLHHLCKDFFALIQDASVVDGDLLTWVSAKHLCHL
Disordered region (IsUnstruct)
******LELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSRDGKEFSPIIGFFIDAGPSEVIVRKWDQQEERLVKVS**EEARYTQAVCSLEFDKQLGPYTLSQYGEWKRLSSYITKSIIERIEPIGGEITVT*************************************GCYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKNYGGSEDTLLGELQFAFIAFLMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLKYGLQKDRNGTETGASALLDDSWLSADSFLHHLCKDFFALIQDASVVDGDLLTWVSAKHLC**
Disordered Region (DISOPRED)
***E*ALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSS*****FSPIIGFFIDAGPSEVIVRKWDQQEERLVK***************LEFDKQLGPYTLSQYGEWKRLSSYITKSIIERIEPIGGEITVTAE*************************************YYTSIPRVVK*****GEELTSLNLDKTELLESLITKNYGGSEDTLLGELQFAFIAFLMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLKYGLQKDRNGTETGASALLDDSWLSADSFLHHLCKDFFALIQDASVVDGDLLTWVSAKHLCHL
Disordered Region (DISEMBL)
MDPEAALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSRDGKEFSPIIGFFIDAGPSEVIVRKWDQQEERLVKVSEEEEARYTQAVCSLEFDKQLGPYTLSQYGEWKRLSSYITKSIIERIEPIGGEITVTAESGMMKNTPKSTMERALDEQLKTSKFTASVDSSQKKGCYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKNYGGSEDTLLGELQFAFIAFLMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLKYGLQKDRNGTETGASALLDDSWLSADSFLHHLCKDFFALIQDASVVDGDLLTWVSAKHLCHL
Disordered Region (DISPRO)
MDPEAALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSRDGKEFSPIIGFFIDAGPSEVIVRKWDQQEERLVKVSEEEEARYTQAVCSLEFDKQLGPYTLSQYGEWKRLSSYITKSIIERIEPIGGEITVTAESGMMKNTPKSTMERALDEQLKTSKF********KKGCYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKNYGGSEDTLLGELQFAFIAFLMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLKYGLQKDRNGTETGASALLDDSWLSADSFLHHLCKDFFALIQDASVVDGDLLTWVSAKHL**L
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDPEAALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSRDGKEFSPIIGFFIDAGPSEVIVRKWDQQEERLVKVSEEEEARYTQAVCSLEFDKQLGPYTLSQYGEWKRLSSYITKSIIERIEPIGGEITVTAESGMMKNTPKSTMERALDEQLKTSKFTASVDSSQKKGCYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKNYGGSEDTLLGELQFAFIAFLMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLKYGLQKDRNGTETGASALLDDSWLSADSFLHHLCKDFFALIQDASVVDGDLLTWVSAKHLCHL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	355	2.2.26 [Sep-21-2011]
Q08DJ7	384	Protein AAR2 homolog OS=B	yes	no	0.904	0.835	0.312	1e-39
Q9Y312	384	Protein AAR2 homolog OS=H	yes	no	0.881	0.815	0.312	1e-38
Q9D2V5	384	Protein AAR2 homolog OS=M	yes	no	0.881	0.815	0.309	2e-38
Q5R5N9	384	Protein AAR2 homolog OS=P	yes	no	0.881	0.815	0.312	4e-38
Q4R7D0	384	Protein AAR2 homolog OS=M	N/A	no	0.890	0.822	0.314	4e-38
Q09305	357	Protein AAR2 homolog OS=C	yes	no	0.890	0.885	0.315	9e-37
O77682	337	Protein AAR2 homolog OS=O	no	no	0.678	0.715	0.295	3e-29
P32357	355	A1 cistron-splicing facto	yes	no	0.729	0.729	0.233	7e-09

>sp|Q08DJ7|AAR2_BOVIN Protein AAR2 homolog OS=Bos taurus GN=AAR2 PE=2 SV=1

 Score =  163 bits (413), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 110/352 (31%), Positives = 184/352 (52%), Gaps = 31/352 (8%)

Query: 1   MDPEAALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSR 60
           MDPE A  L   GAT+++L++P+ T FGID   + VGP F+G+KMIPPG+HF+ YSS  +
Sbjct: 6   MDPELARRLFFEGATVVILNMPKGTEFGIDYNSWEVGPKFRGVKMIPPGIHFLHYSSVDK 65

Query: 61  -DGKEFSPIIGFFIDAGPSEVIVRKWDQQEERLVKVSEEEEARYTQAVCSL-EFDKQLGP 118
            + +E  P +GFF++     + V +WD   E  V +S   EA       +L E D+ LGP
Sbjct: 66  ANPREVGPRMGFFLNLQQRGLKVLRWDAAREE-VDLSPAPEAEVEAMRANLQELDQFLGP 124

Query: 119 YTLSQYGEWKRLSSYITKSIIERIEPIGGEITVTAE-----------SGMMKNTPKSTME 167
           Y  +   +W  L+++I+++ +E+++P   +I   +E             + +N P+   E
Sbjct: 125 YPYTTLKKWISLTNFISEATVEKLQPESRQICAFSEVLPVLSMRHTKDRVGQNLPRCGAE 184

Query: 168 -RALDEQLKTSKFTASVDSSQKKGCYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLIT 226
            ++  E L           ++ +   ++ +P  +   G    E+T  ++D +  LE++++
Sbjct: 185 CKSYQEGLARLPEMKPRAGTEIR---FSELPTQMFPAGATPAEITRHSMDLSYALETVLS 241

Query: 227 KNYGGSEDTLLGELQFAFIAFLMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIK 286
           K +  S   +LGELQFAF+ FL+G   EAF  WK L++LL    EA +   S L+   I 
Sbjct: 242 KQFPCSPQDVLGELQFAFVCFLLGNVYEAFEHWKRLLNLLCRSEEAMVKHHS-LYVNLIS 300

Query: 287 VIYYQLKYGLQKDRNGTETGASALLDDSWLSADSFLHHLCKDFFALIQDASV 338
           ++Y+QL           E  A   +D   +S D+FL    + FF+  +  +V
Sbjct: 301 ILYHQL----------GEIPADFFVD--IVSQDNFLTSTLQVFFSSARSVAV 340

Bos taurus (taxid: 9913)

>sp|Q9Y312|AAR2_HUMAN Protein AAR2 homolog OS=Homo sapiens GN=AAR2 PE=1 SV=2

 Score =  160 bits (406), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 108/346 (31%), Positives = 178/346 (51%), Gaps = 33/346 (9%)

Query: 1   MDPEAALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSR 60
           MDPE A  L   GAT+++L++P+ T FGID   + VGP F+G+KMIPPG+HF+ YSS  +
Sbjct: 6   MDPELAKRLFFEGATVVILNMPKGTEFGIDYNSWEVGPKFRGVKMIPPGIHFLHYSSVDK 65

Query: 61  -DGKEFSPIIGFFIDAGPSEVIVRKWDQQEERLVKVSEEEEARYTQAVCSL-EFDKQLGP 118
            + KE  P +GFF+      + V +W    E  V +S   E+       +L E D+ LGP
Sbjct: 66  ANPKEVGPRMGFFLSLHQRGLTVLRWSTLREE-VDLSPAPESEVEAMRANLQELDQFLGP 124

Query: 119 YTLSQYGEWKRLSSYITKSIIERIEPIGGEITVTAE-----------SGMMKNTPKSTME 167
           Y  +   +W  L+++I+++ +E+++P   +I   ++             + +N P+  +E
Sbjct: 125 YPYATLKKWISLTNFISEATVEKLQPENRQICAFSDVLPVLSMKHTKDRVGQNLPRCGIE 184

Query: 168 -RALDEQLKTSKFTASVDSSQKKGCYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLIT 226
            ++  E L        +         ++ +P  +   G    E+T  ++D +  LE+++ 
Sbjct: 185 CKSYQEGLAR---LPEMKPRAGTEIRFSELPTQMFPEGATPAEITKHSMDLSYALETVLN 241

Query: 227 KNYGGSEDTLLGELQFAFIAFLMGQSLEAFLQWKSLVSLLFGC-SEAPLHTRSQLFTMFI 285
           K +  S   +LGELQFAF+ FL+G   EAF  WK L++LL  C SEA +     L+   I
Sbjct: 242 KQFPSSPQDVLGELQFAFVCFLLGNVYEAFEHWKRLLNLL--CRSEAAMMKHHTLYINLI 299

Query: 286 KVIYYQLKYGLQKDRNGTETGASALLDDSWLSADSFLHHLCKDFFA 331
            ++Y+QL           E  A   +D   +S D+FL    + FF+
Sbjct: 300 SILYHQL----------GEIPADFFVD--IVSQDNFLTSTLQVFFS 333

Homo sapiens (taxid: 9606)

>sp|Q9D2V5|AAR2_MOUSE Protein AAR2 homolog OS=Mus musculus GN=Aar2 PE=2 SV=3

 Score =  160 bits (404), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 107/346 (30%), Positives = 184/346 (53%), Gaps = 33/346 (9%)

Query: 1   MDPEAALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSR 60
           MDPE A +L   GAT+++L++P+ T FGID   + VGP F+G+KMIPPG+HF++YSS  +
Sbjct: 6   MDPELAKQLFFEGATVVILNMPKGTEFGIDYNSWEVGPKFRGVKMIPPGIHFLYYSSVDK 65

Query: 61  -DGKEFSPIIGFFIDAGPSEVIVRKWDQQEERLVKVSEEEEARYTQAVCSL-EFDKQLGP 118
            + +E  P +GFF+      + V +W+  +E  V +S   EA       +L + D+ LGP
Sbjct: 66  ANPREVGPRMGFFLSLKQRGLTVLRWNAVQEE-VDLSPAPEAEVEAMRANLPDLDQFLGP 124

Query: 119 YTLSQYGEWKRLSSYITKSIIERIEPIGGEITVTAE-----------SGMMKNTPKSTME 167
           Y  +   +W  L+++I+++ +E+++P   +I   ++             + +N P    E
Sbjct: 125 YPYATLKKWISLTNFISEATMEKLQPESRQICAFSDVLPVLFMKHTKDRVGQNLPLCGTE 184

Query: 168 -RALDEQLKTSKFTASVDSSQKKGCYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLIT 226
            R+  E L           ++ +   ++ +P  +   G    E+T  ++D +  LE++++
Sbjct: 185 CRSYQEGLARLPEMRPRAGTEIR---FSELPTQMFPAGATPAEITRHSMDLSYALETVLS 241

Query: 227 KNYGGSEDTLLGELQFAFIAFLMGQSLEAFLQWKSLVSLLFGC-SEAPLHTRSQLFTMFI 285
           K + G+   +LGELQFAF+ FL+G   EAF  WK L++LL  C SE+ +     L+   I
Sbjct: 242 KQFPGNPQDVLGELQFAFVCFLLGNVYEAFEHWKRLLNLL--CRSESAMGKYHALYISLI 299

Query: 286 KVIYYQLKYGLQKDRNGTETGASALLDDSWLSADSFLHHLCKDFFA 331
            ++Y+QL           E  A   +D   +S D+FL    + FF+
Sbjct: 300 SILYHQLG----------EIPADFFVD--IVSQDNFLTSTLQVFFS 333

Mus musculus (taxid: 10090)

>sp|Q5R5N9|AAR2_PONAB Protein AAR2 homolog OS=Pongo abelii GN=AAR2 PE=2 SV=1

 Score =  159 bits (401), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 108/346 (31%), Positives = 176/346 (50%), Gaps = 33/346 (9%)

Query: 1   MDPEAALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSR 60
           MDPE A  L   GAT+++L++P+ T FGID   + VGP F+G+K IPPG+HF+ YSS  +
Sbjct: 6   MDPELAKRLFFEGATVVILNMPRGTEFGIDYNSWEVGPKFRGVKTIPPGIHFLHYSSVDK 65

Query: 61  -DGKEFSPIIGFFIDAGPSEVIVRKWDQQEERLVKVSEEEEARYTQAVCSL-EFDKQLGP 118
            + KE  P +GFF+      + V +W    E  V +S   E+       +L E D+ LGP
Sbjct: 66  ANPKEVGPRMGFFLSLHQRGLTVLRWSTLREE-VDLSPAPESEVEAMRANLQELDQFLGP 124

Query: 119 YTLSQYGEWKRLSSYITKSIIERIEPIGGEITVTAE-----------SGMMKNTPKSTME 167
           Y  +   +W  L+++I+++ +E+++P   +I   ++             M +N P+   E
Sbjct: 125 YPYATLKKWISLTNFISEATVEKLQPENRQICAFSDVLPVLSMKHTKDRMGQNLPRCGTE 184

Query: 168 -RALDEQLKTSKFTASVDSSQKKGCYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLIT 226
            ++  E L        +         ++ +P  +   G    E+T  ++D +  LE+++ 
Sbjct: 185 CKSYQEGLAR---LPEMKPRAGTEIRFSELPTQMFPEGATPAEITKHSMDLSYALETVLN 241

Query: 227 KNYGGSEDTLLGELQFAFIAFLMGQSLEAFLQWKSLVSLLFGC-SEAPLHTRSQLFTMFI 285
           K +  S   +LGELQFAF+ FL+G   EAF  WK L++LL  C SEA +     L+   I
Sbjct: 242 KQFPSSPQDVLGELQFAFVCFLLGNVYEAFEHWKRLLNLL--CRSEAAMMKHHTLYINLI 299

Query: 286 KVIYYQLKYGLQKDRNGTETGASALLDDSWLSADSFLHHLCKDFFA 331
            ++Y+QL           E  A   +D   +S D+FL    + FF+
Sbjct: 300 SILYHQL----------GEIPADFFVD--IVSQDNFLTSTLQVFFS 333

Pongo abelii (taxid: 9601)

>sp|Q4R7D0|AAR2_MACFA Protein AAR2 homolog OS=Macaca fascicularis GN=AAR2 PE=2 SV=1

 Score =  159 bits (401), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 108/343 (31%), Positives = 179/343 (52%), Gaps = 27/343 (7%)

Query: 1   MDPEAALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSR 60
           MDPE A  L   GAT+++L++P+ T FGID   + VGP F+G+KMIPPG+HF++YSS  +
Sbjct: 6   MDPELAKRLFFEGATVVILNMPKGTEFGIDCNSWEVGPKFRGVKMIPPGIHFLYYSSVDK 65

Query: 61  -DGKEFSPIIGFFIDAGPSEVIVRKWDQQEERLVKVSEEEEARYTQAVCSL-EFDKQLGP 118
            + KE  P +GFF+      + V +W    E  V +S   E+       +L E D+ LGP
Sbjct: 66  ANPKEVGPRMGFFLSLYQRGLTVLRWSTLREE-VDLSPAPESEVEAMRANLQELDQFLGP 124

Query: 119 YTLSQYGEWKRLSSYITKSIIERIEPIGGEITVTAE---SGMMKNTPK---STMERALDE 172
           Y  +   +W  L+++I+++ +E+++P   +I   ++      MK+T       + R   E
Sbjct: 125 YPYATLKKWISLTNFISEATVEKLQPENRQICAFSDVLPVLSMKHTKDRVGQNLPRCGTE 184

Query: 173 QLKTSKFTASVDSSQKKG---CYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKNY 229
                +  A +   + +      ++ +P  +   G    E+T  ++D +  L++++ K +
Sbjct: 185 CKSYQEGLARLPEMKPRAGTEIRFSELPTQMFPAGATPAEITKHSMDLSYALQTVLNKQF 244

Query: 230 GGSEDTLLGELQFAFIAFLMGQSLEAFLQWKSLVSLLFGC-SEAPLHTRSQLFTMFIKVI 288
             S   +LGELQFAF+ FL+G   EAF  WK L++LL  C SEA +     L+   I ++
Sbjct: 245 PSSPQDVLGELQFAFVCFLLGNVYEAFEHWKRLLNLL--CRSEAAMVKHHTLYINLISIL 302

Query: 289 YYQLKYGLQKDRNGTETGASALLDDSWLSADSFLHHLCKDFFA 331
           Y+QL           E  A   +D   +S D+FL    + FF+
Sbjct: 303 YHQL----------GEIPADFFVD--IVSQDNFLTSTLQVFFS 333

Macaca fascicularis (taxid: 9541)

>sp|Q09305|AAR2_CAEEL Protein AAR2 homolog OS=Caenorhabditis elegans GN=F10B5.2 PE=1 SV=1

 Score =  154 bits (389), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 113/358 (31%), Positives = 164/358 (45%), Gaps = 42/358 (11%)

Query: 1   MDPEAALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSR 60
           + PE    + ++GA LL L  PQ + FGID + +  G  F G+KMIPPGVHFV+ S  S 
Sbjct: 5   LPPEIVDYMYRNGAFLLFLGFPQASEFGIDYKSWKTGEKFMGLKMIPPGVHFVYCSIKS- 63

Query: 61  DGKEFSPIIGFFIDAGPSEVIVRKWDQQEERLVKVSEEEEARYTQAVCS----LEFDKQL 116
                +P IGFF +    E++V+KW+ + E      E+EE    Q           D  L
Sbjct: 64  -----APRIGFFHNFKAGEILVKKWNTESETF----EDEEVPTDQISEKKRQLKNMDSSL 114

Query: 117 GPYTLSQYGEWKRLSSYITKSIIERIEPIGGEITVTAESGMMKNTPKSTMERALDEQLKT 176
            PY    Y  W  L+ +IT   +ERI PI G IT  AE   + +     ME A  E  K 
Sbjct: 115 APYPYENYRSWYGLTDFITADTVERIHPILGRITSQAE---LVSLETEFMENAEKEH-KD 170

Query: 177 SKFTASVDSSQKKGCYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKNY------- 229
           S F   VD        +T    +   +  +G E+   ++    + ++ +   Y       
Sbjct: 171 SHFRNRVDRENPVRTRFTDQHGLPIMKIREGYEIRFQDIPPLTVSQNRVGIEYSDRLYRL 230

Query: 230 ----GGSEDTLLGELQFAFIAFLMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFI 285
               GG    LL E+Q AF+ FL GQ  E F QWK ++ L+  C    L +  +LF  FI
Sbjct: 231 LRALGGDWKQLLAEMQIAFVCFLQGQVFEGFEQWKRIIHLM-SCCPNSLGSEKELFMSFI 289

Query: 286 KVIYYQLKYGLQKDRNGTETGASALLDDSWLSADSFLHHLCKDFFALIQDASVVDGDL 343
           +V+++QLK          E      +D   +S D+FL       FA ++D++    DL
Sbjct: 290 RVLFFQLK----------ECPTDFFVD--IVSRDNFLTTTLSMLFANVRDSAHAGDDL 335

Caenorhabditis elegans (taxid: 6239)

>sp|O77682|AAR2_RABIT Protein AAR2 homolog OS=Oryctolagus cuniculus GN=AAR2 PE=2 SV=2

 Score =  129 bits (325), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 90/305 (29%), Positives = 147/305 (48%), Gaps = 64/305 (20%)

Query: 1   MDPEAALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSR 60
           MDPE A  L   GAT+++L++P+ T FGID   + VGP F+G+KMIPPG+HF+ YS+   
Sbjct: 6   MDPELAKCLFFEGATVVILNMPKGTEFGIDYNSWEVGPKFRGVKMIPPGIHFLHYSA--- 62

Query: 61  DGKEFSPIIGFFIDAGPSEVIVRKWDQQEERLVKVSEEEEARYTQAVCSLEFDKQLGPYT 120
                                V K + Q                      E D+ LGPY 
Sbjct: 63  ---------------------VDKANLQ----------------------ELDQFLGPYP 79

Query: 121 LSQYGEWKRLSSYITKSIIERIEPIGGEITVTAE-----------SGMMKNTPKSTME-R 168
            +   +W  L+S+I+++ +ER++P   +I   ++             + +N P+   E +
Sbjct: 80  YATLKKWISLTSFISEATVERLQPESRQICAFSDVLPVLAMKHTKDRVGQNLPQCGTECK 139

Query: 169 ALDEQLKTSKFTASVDSSQKKGCYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKN 228
           +  E L           ++ +   ++ +P  +   G    E+T  ++D +  LE ++ + 
Sbjct: 140 SYQEGLARLPEMKPRAGTEIR---FSELPTQMFPAGATPAEITRHSMDLSYALEMVLGRQ 196

Query: 229 YGGSEDTLLGELQFAFIAFLMGQSLEAFLQWKSLVSLLFGC-SEAPLHTRSQLFTMFIKV 287
           + GS   +LGELQFAF+ FL+G   EAF  WK L++LL  C SEA +     L+   I +
Sbjct: 197 FPGSPQDVLGELQFAFVCFLLGNVYEAFEHWKRLLNLL--CRSEAAMVKHHALYVNLISI 254

Query: 288 IYYQL 292
           +Y+QL
Sbjct: 255 LYHQL 259

Oryctolagus cuniculus (taxid: 9986)

>sp|P32357|AAR2_YEAST A1 cistron-splicing factor AAR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AAR2 PE=1 SV=1

 Score = 62.0 bits (149), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 128/291 (43%), Gaps = 32/291 (10%)

Query: 15  TLLLLDVPQYTLFGIDTQMFSVGPS--FKGIKMIPPG-VHFVFY----SSSSRDGKEFSP 67
           T+     P     GID   F+V  +  F GIK IP G VH + +    +SS R G  F  
Sbjct: 3   TVPFTSAPIEVTIGIDQYSFNVKENQPFHGIKDIPIGHVHVIHFQHADNSSMRYGYWFDC 62

Query: 68  IIG-FFIDAGPSEVIVRKWDQQE----ERLVKVSEEEEARYTQAVCSLEFDKQLGPYTLS 122
            +G F+I   P + + +  ++++    E +V   +E +      V   + D+    Y L+
Sbjct: 63  RMGNFYIQYDPKDGLYKMMEERDGAKFENIVHNFKERQM----MVSYPKIDEDDTWYNLT 118

Query: 123 QYGEWKRLSSYITKSIIERIEPIGGEITVTAESGMMKNTPKSTMERALDEQLKTSKFTAS 182
           ++ +  ++   + K    +   +   +T   E+ ++K    S++++A       SK  A 
Sbjct: 119 EFVQMDKIRKIVRKDE-NQFSYVDSSMTTVQENELLK----SSLQKA------GSKMEAK 167

Query: 183 VDSSQKKGCYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKNYGGSEDTLLGELQF 242
            +        YT I    +     G E+    LDK+  L +++ +    +     GELQF
Sbjct: 168 NEDDPAHSLNYTVINFKSREAIRPGHEMEDF-LDKSYYLNTVMLQGIFKNSSNYFGELQF 226

Query: 243 AFIAFLMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLK 293
           AF+  +   +  + LQW +++ L+   +  P H   +L     +++YYQ+K
Sbjct: 227 AFLNAMFFGNYGSSLQWHAMIELICSSATVPKHMLDKL----DEILYYQIK 273

Involved in splicing pre-mRNA of the A1 cistron and other genes that are important for cell growth.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	355
255587433	409	Protein C20orf4, putative [Ricinus commu	0.974	0.845	0.763	1e-160
225453122	394	PREDICTED: uncharacterized protein C20or	0.977	0.880	0.765	1e-158
224065196	402	predicted protein [Populus trichocarpa]	0.974	0.860	0.772	1e-157
356551749	391	PREDICTED: uncharacterized protein C20or	0.969	0.879	0.777	1e-156
356501053	391	PREDICTED: uncharacterized protein C20or	0.969	0.879	0.774	1e-155
357492217	391	hypothetical protein MTR_5g079770 [Medic	0.969	0.879	0.742	1e-153
297841149	397	AAR2 protein family [Arabidopsis lyrata	0.974	0.871	0.730	1e-151
18408532	399	A1 cistron-splicing factor AAR2 [Arabido	0.974	0.867	0.722	1e-149
449442747	387	PREDICTED: protein AAR2 homolog [Cucumis	0.980	0.899	0.722	1e-149
449476165	392	PREDICTED: protein AAR2 homolog [Cucumis	0.974	0.882	0.717	1e-147

>gi|255587433|ref|XP_002534269.1| Protein C20orf4, putative [Ricinus communis] gi|223525600|gb|EEF28112.1| Protein C20orf4, putative [Ricinus communis]

 Score =  570 bits (1470), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 268/351 (76%), Positives = 310/351 (88%), Gaps = 5/351 (1%)

Query: 1   MDPEAALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSR 60
           MDPE AL+ VK GATLLLLDVPQYTLFGIDTQ+F+VGP+FKG+KMIPPG HFV+YSSSSR
Sbjct: 4   MDPETALDFVKQGATLLLLDVPQYTLFGIDTQVFTVGPAFKGVKMIPPGTHFVYYSSSSR 63

Query: 61  DGKEFSPIIGFFIDAGPSEVIVRKWDQQEERLVKVSEEEEARYTQAVCSLEFDKQLGPYT 120
           DGK+FSPIIGFF+DAGPSEVIVRKW +QEERLVKVSEEEE R++QAV SLEFD+ LGPY 
Sbjct: 64  DGKDFSPIIGFFVDAGPSEVIVRKWVRQEERLVKVSEEEEERFSQAVKSLEFDRNLGPYN 123

Query: 121 LSQYGEWKRLSSYITKSIIERIEPIGGEITVTAESGMMKNTPKSTMERALDEQLKTSK-- 178
           L+QYGEWKRLS+Y+ K++IERIEPIGGEIT+ +ESG+ +++PK+ ME+ALDEQL+ SK  
Sbjct: 124 LNQYGEWKRLSNYVRKNVIERIEPIGGEITIESESGITRSSPKTAMEKALDEQLRNSKCS 183

Query: 179 FTASVDSSQKKGCYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKNYGGSEDTLLG 238
            +ASVD ++K+GCYYTSIP V+K RG+   ELTSLNLDKTELLE+++ K+YGGSED L+G
Sbjct: 184 VSASVDKAEKRGCYYTSIPHVIKRRGIYSAELTSLNLDKTELLENILVKDYGGSEDLLIG 243

Query: 239 ELQFAFIAFLMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLKYGLQK 298
           ELQFAFIAFLMGQSLEAF QWKSLVSLL GC+EAPL TRS+LFT FIKVIYYQLKYGLQK
Sbjct: 244 ELQFAFIAFLMGQSLEAFFQWKSLVSLLLGCTEAPLRTRSRLFTKFIKVIYYQLKYGLQK 303

Query: 299 DR---NGTETGASALLDDSWLSADSFLHHLCKDFFALIQDASVVDGDLLTW 346
           D+   N    G S LLD+SW SADSFLH LCKDFF L+QDASVVDGDLLTW
Sbjct: 304 DKAETNDAGVGVSTLLDESWFSADSFLHQLCKDFFLLVQDASVVDGDLLTW 354

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453122|ref|XP_002272712.1| PREDICTED: uncharacterized protein C20orf4 homolog [Vitis vinifera] gi|296087181|emb|CBI33555.3| unnamed protein product [Vitis vinifera]

 Score =  563 bits (1452), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 268/350 (76%), Positives = 311/350 (88%), Gaps = 3/350 (0%)

Query: 1   MDPEAALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSR 60
           M+PE AL LV++GATLLLLDVPQ+TL GIDT MFSVGP FKGIKMIPPG HFV+YSSS+R
Sbjct: 1   MEPETALGLVRNGATLLLLDVPQFTLIGIDTLMFSVGPVFKGIKMIPPGPHFVYYSSSNR 60

Query: 61  DGKEFSPIIGFFIDAGPSEVIVRKWDQQEERLVKVSEEEEARYTQAVCSLEFDKQLGPYT 120
           DG +FSPI+GFFID  PSEVIVRKWDQQ+ERLVK+SEEEE RY Q+V SLEFD++LGPYT
Sbjct: 61  DGSKFSPIVGFFIDTCPSEVIVRKWDQQDERLVKLSEEEEERYCQSVKSLEFDRELGPYT 120

Query: 121 LSQYGEWKRLSSYITKSIIERIEPIGGEITVTAESGMMKNTPKSTMERALDEQLKTSKFT 180
           LSQYG+WKRLS+ ITK+ IERIEPIGGEITV  ES M+ NTPK++ME+ALD+QL+ SKF+
Sbjct: 121 LSQYGDWKRLSNSITKTTIERIEPIGGEITVAHESEMVGNTPKTSMEKALDQQLRNSKFS 180

Query: 181 ASVDSSQKKGCYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKNYGGSEDTLLGEL 240
            S D SQK+GCYYTSIPRV+K +G+ G+ELTSLNLDKT+LLES++ K+YGGSED LLGEL
Sbjct: 181 KSADKSQKRGCYYTSIPRVIKRKGIHGQELTSLNLDKTQLLESILMKDYGGSEDLLLGEL 240

Query: 241 QFAFIAFLMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLKYGLQKDR 300
           QFAFIAFLMGQSLE FLQWKSLVSLLFGC+EAP HTRS LFT FI+VIYYQLK+G QKD+
Sbjct: 241 QFAFIAFLMGQSLEGFLQWKSLVSLLFGCNEAPFHTRSLLFTKFIRVIYYQLKFGFQKDQ 300

Query: 301 NGT---ETGASALLDDSWLSADSFLHHLCKDFFALIQDASVVDGDLLTWV 347
            G+   E  +S LLD+SWLSADSFLHHLCKDFF+L+Q+ASVVDGDLL+W 
Sbjct: 301 TGSSNVEKESSLLLDESWLSADSFLHHLCKDFFSLVQEASVVDGDLLSWT 350

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065196|ref|XP_002301711.1| predicted protein [Populus trichocarpa] gi|222843437|gb|EEE80984.1| predicted protein [Populus trichocarpa]

 Score =  560 bits (1442), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 271/351 (77%), Positives = 306/351 (87%), Gaps = 5/351 (1%)

Query: 1   MDPEAALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSR 60
           MDPE ALELVK GATLLLLDVPQYTL GIDTQMF+VGP+FKGIKMIPPG HFV+YSSSS+
Sbjct: 1   MDPETALELVKQGATLLLLDVPQYTLVGIDTQMFTVGPAFKGIKMIPPGPHFVYYSSSSK 60

Query: 61  DGKEFSPIIGFFIDAGPSEVIVRKWDQQEERLVKVSEEEEARYTQAVCSLEFDKQLGPYT 120
           DGK+FSPI+GFF+DA PSEVIVRKW+QQEERLVKV E+EE R+ QAV SLEFD+ LGPY 
Sbjct: 61  DGKQFSPIVGFFVDADPSEVIVRKWNQQEERLVKVPEDEEERFCQAVKSLEFDRYLGPYN 120

Query: 121 LSQYGEWKRLSSYITKSIIERIEPIGGEITVTAESGMMKNTPKSTMERALDEQLKTSKFT 180
           LSQYGEWK+LSSY+TK+II+RIEPIGGEITV  ES M KN+PK+++ERAL  QL T KF+
Sbjct: 121 LSQYGEWKQLSSYLTKTIIKRIEPIGGEITVACESEMDKNSPKTSIERALHAQLGTGKFS 180

Query: 181 A--SVDSSQKKGCYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKNYGGSEDTLLG 238
           A  SVD S+K+GCYYT+IPRV+K RGM+G+ELTSLNLDKTELLES++ K+YGGSED LLG
Sbjct: 181 ASTSVDRSKKRGCYYTTIPRVIKRRGMEGKELTSLNLDKTELLESVLIKDYGGSEDLLLG 240

Query: 239 ELQFAFIAFLMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLKYGLQK 298
           ELQFA+IAFLMGQSLEAF QWKSLVSLL  C EAP  TRS LFT FIKVI+YQLKYGLQK
Sbjct: 241 ELQFAYIAFLMGQSLEAFFQWKSLVSLLLSCIEAPFRTRSHLFTKFIKVIFYQLKYGLQK 300

Query: 299 DR---NGTETGASALLDDSWLSADSFLHHLCKDFFALIQDASVVDGDLLTW 346
           DR   NG     S+LLD+SW SADSFLH LCKDFF L+ DA+VVDGDLLTW
Sbjct: 301 DRKESNGAGIAVSSLLDESWFSADSFLHRLCKDFFLLVLDATVVDGDLLTW 351

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551749|ref|XP_003544236.1| PREDICTED: uncharacterized protein C20orf4 homolog [Glycine max]

 Score =  557 bits (1436), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 269/346 (77%), Positives = 302/346 (87%), Gaps = 2/346 (0%)

Query: 1   MDPEAALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSR 60
           MDPE ALELVKHG TLLLLDVPQYTL  +DTQMFSVGP+FKGIKMIPPGVHFV+YSSSSR
Sbjct: 1   MDPETALELVKHGVTLLLLDVPQYTLVAVDTQMFSVGPAFKGIKMIPPGVHFVYYSSSSR 60

Query: 61  DGKEFSPIIGFFIDAGPSEVIVRKWDQQEERLVKVSEEEEARYTQAVCSLEFDKQLGPYT 120
           DGKEFS IIGFFIDAGPSEVIVRKWDQQEERL+K+SEEEE RY+QAV +LEFD+QLGPY 
Sbjct: 61  DGKEFSSIIGFFIDAGPSEVIVRKWDQQEERLIKLSEEEEERYSQAVKNLEFDRQLGPYN 120

Query: 121 LSQYGEWKRLSSYITKSIIERIEPIGGEITVTAESGMMKNTPKSTMERALDEQLKTSKFT 180
           LS Y +WK+LS++ITKS+IER+EPIGGEITV  E+ +++N  K  ME AL +QLK     
Sbjct: 121 LSHYEDWKQLSNFITKSVIERLEPIGGEITVECENEIVRNATKMPMEDALGKQLKVGNSA 180

Query: 181 ASVDSSQKKGCYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKNYGGSEDTLLGEL 240
            SV  SQ+KGCYYTSIP VVKC+G+ G+ELTSLNLDKT+LLE+L+ K+YGGSED LLGEL
Sbjct: 181 TSVGKSQRKGCYYTSIPHVVKCKGISGQELTSLNLDKTQLLETLLAKDYGGSEDLLLGEL 240

Query: 241 QFAFIAFLMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLKYGLQKDR 300
           QFAF+AFLMGQSLEAFLQWKSLVSLLFGC+EAP  TR+ LFT FIKVIY QLKYGLQKD 
Sbjct: 241 QFAFVAFLMGQSLEAFLQWKSLVSLLFGCTEAPFRTRTHLFTKFIKVIYNQLKYGLQKDH 300

Query: 301 NGTETGASALLDDSWLSADSFLHHLCKDFFALIQDASVVDGDLLTW 346
            G ETG SALLDDSW+SADSFLHHLCKDFF+ + D SVVDGDLL W
Sbjct: 301 MG-ETG-SALLDDSWISADSFLHHLCKDFFSSLLDGSVVDGDLLKW 344

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501053|ref|XP_003519343.1| PREDICTED: uncharacterized protein C20orf4 homolog [Glycine max]

 Score =  555 bits (1429), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 268/346 (77%), Positives = 301/346 (86%), Gaps = 2/346 (0%)

Query: 1   MDPEAALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSR 60
           MDP  ALELVKHG TLL LDVPQYTL  + TQMFSVGP+FKGIKMIPPG+HFV+YSSSSR
Sbjct: 1   MDPGTALELVKHGVTLLFLDVPQYTLVAVGTQMFSVGPTFKGIKMIPPGIHFVYYSSSSR 60

Query: 61  DGKEFSPIIGFFIDAGPSEVIVRKWDQQEERLVKVSEEEEARYTQAVCSLEFDKQLGPYT 120
           DGKEFSPIIGFFIDAGPSEVIVRKWDQQ+ERL+K+SEEEE RY+QAV +LEFD+QLGPY 
Sbjct: 61  DGKEFSPIIGFFIDAGPSEVIVRKWDQQDERLIKLSEEEEERYSQAVKNLEFDRQLGPYN 120

Query: 121 LSQYGEWKRLSSYITKSIIERIEPIGGEITVTAESGMMKNTPKSTMERALDEQLKTSKFT 180
           LS Y +WKRLS++ITKS+IER+EPIGGEITV  E+ +++NT K  ME ALD+QLK     
Sbjct: 121 LSHYEDWKRLSNFITKSVIERLEPIGGEITVECENEIVRNTTKMPMEEALDKQLKVGNSA 180

Query: 181 ASVDSSQKKGCYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKNYGGSEDTLLGEL 240
            SV  S++KGCYYTSIP VVKC+G+ G+ELTSLNLDKT LLE+L+TK+YG SED LLGEL
Sbjct: 181 TSVGKSRRKGCYYTSIPHVVKCKGISGQELTSLNLDKTHLLETLLTKDYGDSEDLLLGEL 240

Query: 241 QFAFIAFLMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLKYGLQKDR 300
           QFAFIAFLMGQSLEAFLQWKSLVSLLFGC+EAP  TR+ LFT FIKVIY QLKYGLQKD 
Sbjct: 241 QFAFIAFLMGQSLEAFLQWKSLVSLLFGCTEAPFRTRTHLFTKFIKVIYNQLKYGLQKD- 299

Query: 301 NGTETGASALLDDSWLSADSFLHHLCKDFFALIQDASVVDGDLLTW 346
           +  ETG SALLDDSWLSADSFLHHLCKDFF+ + D SVVDGDLL W
Sbjct: 300 HMDETG-SALLDDSWLSADSFLHHLCKDFFSSLLDGSVVDGDLLNW 344

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357492217|ref|XP_003616397.1| hypothetical protein MTR_5g079770 [Medicago truncatula] gi|355517732|gb|AES99355.1| hypothetical protein MTR_5g079770 [Medicago truncatula]

 Score =  546 bits (1407), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 257/346 (74%), Positives = 294/346 (84%), Gaps = 2/346 (0%)

Query: 1   MDPEAALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSR 60
           MD + ALELVK+G TLL LDVPQYTL  IDTQ+FSVGP+FKGIKMIPPG HFV+YSSS+R
Sbjct: 1   MDSQTALELVKNGVTLLFLDVPQYTLVAIDTQVFSVGPTFKGIKMIPPGTHFVYYSSSTR 60

Query: 61  DGKEFSPIIGFFIDAGPSEVIVRKWDQQEERLVKVSEEEEARYTQAVCSLEFDKQLGPYT 120
           DGKEFSP+IGFFIDAGPSEVIVRKWDQQEERLVKVSEEE+ RY  AV ++EFD+QLGPY 
Sbjct: 61  DGKEFSPMIGFFIDAGPSEVIVRKWDQQEERLVKVSEEEDERYRLAVKNMEFDRQLGPYN 120

Query: 121 LSQYGEWKRLSSYITKSIIERIEPIGGEITVTAESGMMKNTPKSTMERALDEQLKTSKFT 180
           LS Y +WKRLS +ITKSIIER+EPIGGE++V  E+ M +N PK+ ME+ALD QLK     
Sbjct: 121 LSHYEDWKRLSDFITKSIIERLEPIGGEVSVECENDMFRNAPKTPMEKALDTQLKVDNSA 180

Query: 181 ASVDSSQKKGCYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKNYGGSEDTLLGEL 240
            SV   Q+KGCYYTSIPRVVKC+G+ G+ELTSLNLDKT+LLE+L+ K+YGGSED LLGEL
Sbjct: 181 TSVGKLQRKGCYYTSIPRVVKCKGISGQELTSLNLDKTQLLETLLVKDYGGSEDLLLGEL 240

Query: 241 QFAFIAFLMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLKYGLQKDR 300
           QFAFIA +MGQSLEAFLQWKSLVSLL GC+EAP HTR++LFT FIKVIYYQLKYGLQKDR
Sbjct: 241 QFAFIALMMGQSLEAFLQWKSLVSLLLGCTEAPFHTRTRLFTKFIKVIYYQLKYGLQKDR 300

Query: 301 NGTETGASALLDDSWLSADSFLHHLCKDFFALIQDASVVDGDLLTW 346
              +     LLDDSW S DSFLHH CK+FF+L+ D SV+DGDLL W
Sbjct: 301 K--DNTGPLLLDDSWFSTDSFLHHHCKEFFSLVLDGSVIDGDLLKW 344

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297841149|ref|XP_002888456.1| AAR2 protein family [Arabidopsis lyrata subsp. lyrata] gi|297334297|gb|EFH64715.1| AAR2 protein family [Arabidopsis lyrata subsp. lyrata]

 Score =  540 bits (1390), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 255/349 (73%), Positives = 301/349 (86%), Gaps = 3/349 (0%)

Query: 1   MDPEAALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSR 60
           MD E ALELVKHGATLL LDVPQ+TL GIDTQ+F+VGPSFKGIKMIPPG+HFVFYSSS+R
Sbjct: 1   MDSEKALELVKHGATLLFLDVPQHTLVGIDTQIFAVGPSFKGIKMIPPGIHFVFYSSSTR 60

Query: 61  DGKEFSPIIGFFIDAGPSEVIVRKWDQQEERLVKVSEEEEARYTQAVCSLEFDKQLGPYT 120
           DGKEFSP IGFF+D G S+VIVRKW+QQ+E L KV+EEEE RY+QAV SLEFDK LGPY 
Sbjct: 61  DGKEFSPTIGFFVDVGLSQVIVRKWNQQDEWLAKVTEEEEERYSQAVRSLEFDKHLGPYN 120

Query: 121 LSQYGEWKRLSSYITKSIIERIEPIGGEITVTAESGMMKNTPKSTMERALDEQLKTSKFT 180
           LSQYGEWK LS+YITK ++E+ EP+GGEITVT ES ++K  PK+ MERALD Q+K SKF 
Sbjct: 121 LSQYGEWKHLSNYITKDVVEKFEPVGGEITVTYESAILKGGPKTAMERALDAQMKKSKFA 180

Query: 181 ASVDSSQKKGC--YYTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKNYGGSEDTLLG 238
           AS  + Q KG   YYT+IPR++K +GM G+ELTS+NLDKT+LLESL++K Y  SED LLG
Sbjct: 181 AS-STEQPKGNRFYYTTIPRIIKHKGMSGQELTSMNLDKTQLLESLLSKEYKDSEDLLLG 239

Query: 239 ELQFAFIAFLMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLKYGLQK 298
           ELQF+F+AFLMGQSLE+F+QWKSLV+LL GC +AP HTRSQLFT F+KVIY+QLKYGLQK
Sbjct: 240 ELQFSFVAFLMGQSLESFMQWKSLVTLLLGCIDAPFHTRSQLFTNFMKVIYHQLKYGLQK 299

Query: 299 DRNGTETGASALLDDSWLSADSFLHHLCKDFFALIQDASVVDGDLLTWV 347
           + NG E G  ALLDDSWL++DSFLH LCKDFFAL+++ SVVDGDLL+W+
Sbjct: 300 ESNGPEMGIHALLDDSWLASDSFLHLLCKDFFALVEETSVVDGDLLSWI 348

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18408532|ref|NP_564876.1| A1 cistron-splicing factor AAR2 [Arabidopsis thaliana] gi|30697360|ref|NP_849850.1| A1 cistron-splicing factor AAR2 [Arabidopsis thaliana] gi|12322270|gb|AAG51165.1|AC074025_15 unknown protein [Arabidopsis thaliana] gi|15529200|gb|AAK97694.1| At1g66510/F28G11_5 [Arabidopsis thaliana] gi|16974373|gb|AAL31112.1| At1g66510/F28G11_5 [Arabidopsis thaliana] gi|332196396|gb|AEE34517.1| A1 cistron-splicing factor AAR2 [Arabidopsis thaliana] gi|332196398|gb|AEE34519.1| A1 cistron-splicing factor AAR2 [Arabidopsis thaliana]

 Score =  535 bits (1378), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 252/349 (72%), Positives = 298/349 (85%), Gaps = 3/349 (0%)

Query: 1   MDPEAALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSR 60
           MD E ALELVKHGATLL LDVPQYTL GIDTQ+F+VGP+FKGIKMIPPG+HFVFYSSS+R
Sbjct: 1   MDSEKALELVKHGATLLFLDVPQYTLVGIDTQIFAVGPAFKGIKMIPPGIHFVFYSSSTR 60

Query: 61  DGKEFSPIIGFFIDAGPSEVIVRKWDQQEERLVKVSEEEEARYTQAVCSLEFDKQLGPYT 120
           DG+EFSP IGFF+D  PS+VIVRKW+QQ+E L KVSEEEE RY+QAV SLEFDK LGPY 
Sbjct: 61  DGREFSPTIGFFVDVAPSQVIVRKWNQQDEWLTKVSEEEEERYSQAVRSLEFDKNLGPYN 120

Query: 121 LSQYGEWKRLSSYITKSIIERIEPIGGEITVTAESGMMKNTPKSTMERALDEQLKTSKFT 180
           L QYGEW+ LS+YITK ++E+ EP+GGEITVT ES ++K  PK+ ME ALD Q+K SKFT
Sbjct: 121 LKQYGEWRHLSNYITKDVVEKFEPVGGEITVTYESAILKGGPKTAMEIALDTQMKKSKFT 180

Query: 181 ASVDSSQKKGC--YYTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKNYGGSEDTLLG 238
            S  + Q KG   YYTSIPR++K +GM G+ELTS+NLDKT+LLES+++K Y  SED LLG
Sbjct: 181 TS-STEQPKGNRFYYTSIPRIIKHKGMSGQELTSMNLDKTQLLESVLSKEYKDSEDLLLG 239

Query: 239 ELQFAFIAFLMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLKYGLQK 298
           ELQF+F+AFLMGQSLE+F+QWKS+VSLL GC+ AP  TRSQLFT FIKVIY+QLKYGLQK
Sbjct: 240 ELQFSFVAFLMGQSLESFMQWKSIVSLLLGCTSAPFQTRSQLFTKFIKVIYHQLKYGLQK 299

Query: 299 DRNGTETGASALLDDSWLSADSFLHHLCKDFFALIQDASVVDGDLLTWV 347
           + +G ETG  ALLDDSWL++DSFLH LCKDFFAL+++ SVVDGDLL+W 
Sbjct: 300 ENSGPETGIHALLDDSWLASDSFLHFLCKDFFALVEETSVVDGDLLSWT 348

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442747|ref|XP_004139142.1| PREDICTED: protein AAR2 homolog [Cucumis sativus]

 Score =  532 bits (1371), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 252/349 (72%), Positives = 297/349 (85%), Gaps = 1/349 (0%)

Query: 1   MDPEAALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSR 60
           MDPE ALELVKHG T+LLLDVPQYTL GIDTQMFSVGPSFKGIKMIPPG HF++YSSSSR
Sbjct: 1   MDPETALELVKHGVTVLLLDVPQYTLLGIDTQMFSVGPSFKGIKMIPPGPHFLYYSSSSR 60

Query: 61  DGKEFSPIIGFFIDAGPSEVIVRKWDQQEERLVKVSEEEEARYTQAVCSLEFDKQLGPYT 120
           DG+EFSPI GFF+DAGPSEVIVR+WDQ+EERLVKV EEEE ++ +A+  LEFD+QLGPY 
Sbjct: 61  DGREFSPITGFFVDAGPSEVIVRRWDQREERLVKVLEEEEGQFREAIRRLEFDRQLGPYN 120

Query: 121 LSQYGEWKRLSSYITKSIIERIEPIGGEITVTAESGMMKNTPKSTMERALDEQLKTSKFT 180
           L QYGEWKR+S++I  + I+R+EPIGG+ITV  E G+ ++T KS +E+ LD+QLK SKF 
Sbjct: 121 LGQYGEWKRMSNHINSTTIKRLEPIGGDITVVCEPGISQSTSKSAVEKVLDDQLKGSKFA 180

Query: 181 ASVDSSQKKGCYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKNYGGSEDTLLGEL 240
             VDSSQ +GCYY  IP V+K RG+ G+ELT LNLDKT LLE+ + K +GGSED LLGEL
Sbjct: 181 TPVDSSQSRGCYYAKIPHVIKQRGVHGQELTYLNLDKTLLLENQLKKYFGGSEDLLLGEL 240

Query: 241 QFAFIAFLMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLKYGLQKDR 300
           QFAF+ FLMGQSLE FLQWKSLV+LLF C EAP  TRSQLFT FIKVIY+QLK+GL+KDR
Sbjct: 241 QFAFVVFLMGQSLEGFLQWKSLVTLLFECREAPFCTRSQLFTKFIKVIYHQLKFGLEKDR 300

Query: 301 NGTETGASA-LLDDSWLSADSFLHHLCKDFFALIQDASVVDGDLLTWVS 348
           +  + G+S+ LLD+SW SADSFLHHLCKDFF+L+ +A VVDGDLLTWVS
Sbjct: 301 SNDKAGSSSILLDESWFSADSFLHHLCKDFFSLVLEAPVVDGDLLTWVS 349

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449476165|ref|XP_004154659.1| PREDICTED: protein AAR2 homolog [Cucumis sativus]

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 249/347 (71%), Positives = 294/347 (84%), Gaps = 1/347 (0%)

Query: 1   MDPEAALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSR 60
           MDPE ALELVKHG T+LLLDVPQYTL GIDTQMFSVGPSFKGIKMIPPG HF++YSSSSR
Sbjct: 1   MDPETALELVKHGVTVLLLDVPQYTLVGIDTQMFSVGPSFKGIKMIPPGPHFLYYSSSSR 60

Query: 61  DGKEFSPIIGFFIDAGPSEVIVRKWDQQEERLVKVSEEEEARYTQAVCSLEFDKQLGPYT 120
           DG+EFSPI GFF+DAGPSEVIVR+WDQ+EERLVKV EEEE ++ +A+  LEFD+QLGPY 
Sbjct: 61  DGREFSPITGFFVDAGPSEVIVRRWDQREERLVKVLEEEEGQFREAIRRLEFDRQLGPYN 120

Query: 121 LSQYGEWKRLSSYITKSIIERIEPIGGEITVTAESGMMKNTPKSTMERALDEQLKTSKFT 180
           L QYGEWKR+S++I  + I+R+EPIGG+ITV  E G+ ++T KS +E+ LD+QLK SKF 
Sbjct: 121 LGQYGEWKRMSNHINSTTIKRLEPIGGDITVVCEPGISQSTSKSAVEKVLDDQLKGSKFA 180

Query: 181 ASVDSSQKKGCYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKNYGGSEDTLLGEL 240
             VDSSQ +GCYY  IP V+K RG+ G+ELT LNLDKT LLE+ + K +GGSED LLGEL
Sbjct: 181 TPVDSSQSRGCYYAKIPHVIKQRGVHGQELTYLNLDKTLLLENQLKKYFGGSEDLLLGEL 240

Query: 241 QFAFIAFLMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLKYGLQKDR 300
           QFAF+ FLMGQSLE FLQWKSLV+LLF C EAP  T SQLFT FIKVIY+QLK+GL+KDR
Sbjct: 241 QFAFVVFLMGQSLEGFLQWKSLVTLLFECREAPFCTMSQLFTKFIKVIYHQLKFGLEKDR 300

Query: 301 NGTETGASA-LLDDSWLSADSFLHHLCKDFFALIQDASVVDGDLLTW 346
           +  + G+S+ LLD+SW SADSFLHHLCKDFF+L+ +A VVDGDLLTW
Sbjct: 301 SNDKAGSSSILLDESWFSADSFLHHLCKDFFSLVLEAPVVDGDLLTW 347

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	355
TAIR|locus:2028992	399	AT1G66510 "AT1G66510" [Arabido	0.971	0.864	0.678	2.1e-125
ZFIN|ZDB-GENE-040704-68	384	aar2 "AAR2 splicing factor hom	0.811	0.75	0.324	7.2e-36
MGI|MGI:1915545	384	Aar2 "AAR2 splicing factor hom	0.811	0.75	0.301	4.7e-32
WB|WBGene00008639	357	F10B5.2 [Caenorhabditis elegan	0.895	0.890	0.294	2.7e-29
SGD|S000000170	355	AAR2 "Component of the U5 snRN	0.740	0.740	0.229	8.6e-09
ASPGD|ASPL0000006654	479	AN10758 [Emericella nidulans (	0.197	0.146	0.354	1.1e-07

TAIR|locus:2028992 AT1G66510 "AT1G66510" [Arabidopsis thaliana (taxid:3702)]

 Score = 1232 (438.7 bits), Expect = 2.1e-125, P = 2.1e-125
 Identities = 236/348 (67%), Positives = 277/348 (79%)

Query:     1 MDPEAALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSR 60
             MD E ALELVKHGATLL LDVPQYTL GIDTQ+F+VGP+FKGIKMIPPG+HFVFYSSS+R
Sbjct:     1 MDSEKALELVKHGATLLFLDVPQYTLVGIDTQIFAVGPAFKGIKMIPPGIHFVFYSSSTR 60

Query:    61 DGKEFSPIIGFFIDAGPSEVIVRKWDQQXXXXXXXXXXXXARYTQAVCSLEFDKQLGPYT 120
             DG+EFSP IGFF+D  PS+VIVRKW+QQ             RY+QAV SLEFDK LGPY 
Sbjct:    61 DGREFSPTIGFFVDVAPSQVIVRKWNQQDEWLTKVSEEEEERYSQAVRSLEFDKNLGPYN 120

Query:   121 LSQYGEWKRLSSYITKSXXXXXXXXXXXXTVTAESGMMKNTPKSTMERALDEQLKTSKFT 180
             L QYGEW+ LS+YITK             TVT ES ++K  PK+ ME ALD Q+K SKFT
Sbjct:   121 LKQYGEWRHLSNYITKDVVEKFEPVGGEITVTYESAILKGGPKTAMEIALDTQMKKSKFT 180

Query:   181 ASVDSSQKKG--CYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKNYGGSEDTLLG 238
              S  + Q KG   YYTSIPR++K +GM G+ELTS+NLDKT+LLES+++K Y  SED LLG
Sbjct:   181 TS-STEQPKGNRFYYTSIPRIIKHKGMSGQELTSMNLDKTQLLESVLSKEYKDSEDLLLG 239

Query:   239 ELQFAFIAFLMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLKYGLQK 298
             ELQF+F+AFLMGQSLE+F+QWKS+VSLL GC+ AP  TRSQLFT FIKVIY+QLKYGLQK
Sbjct:   240 ELQFSFVAFLMGQSLESFMQWKSIVSLLLGCTSAPFQTRSQLFTKFIKVIYHQLKYGLQK 299

Query:   299 DRNGTETGASALLDDSWLSADSFLHHLCKDFFALIQDASVVDGDLLTW 346
             + +G ETG  ALLDDSWL++DSFLH LCKDFFAL+++ SVVDGDLL+W
Sbjct:   300 ENSGPETGIHALLDDSWLASDSFLHFLCKDFFALVEETSVVDGDLLSW 347

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0006457 "protein folding" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

ZFIN|ZDB-GENE-040704-68 aar2 "AAR2 splicing factor homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 99/305 (32%), Positives = 156/305 (51%)

Query:     1 MDPEAALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSR 60
             MDPE A  L + GATL+LL VP+ T  G+D + +++GP F+G+KMIPPG+HF+ Y S S 
Sbjct:     6 MDPEVARGLFEEGATLVLLGVPEGTELGLDYKTWTLGPRFRGVKMIPPGLHFLHYCSVST 65

Query:    61 DGK--EFSPIIGFFIDAGPSEVIVRKWDQQXXXXXXXXXXXXARYTQAVCSLEFDKQLGP 118
             +G   E SP  G F+   P +V+V  W++                 +A    E D+ LGP
Sbjct:    66 NGGCGEISPKTGLFLSLKPRQVLVAHWNKSADDLEISQNSEEVERVRANLK-ELDRYLGP 124

Query:   119 YTLSQYGEW----KRLSSYITKSXXXXXXXXXXXXTVTAESGMM--KNTPKSTMERALDE 172
             Y      +W     RLS  +  +             V  E  +   K+  +  + R  D+
Sbjct:   125 YPYDTLRKWVSLTDRLSQEVAVALQPLSGRVCAFSDVIPELQLTHTKDRVQQNLSRN-DQ 183

Query:   173 QLKTSK--FTASVDSSQKKGCY--YTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKN 228
             + ++ K          Q++G    ++SIP+     G    ++T  ++D++  L +++ ++
Sbjct:   184 ECQSMKEGLDRLPRMKQREGTELRFSSIPKQAYPPGATPAQITQYSMDRSYTLNAVLERH 243

Query:   229 YGGSEDTLLGELQFAFIAFLMGQSLEAFLQWKSLVSLLFGC-SEAPLHTRSQLFTMFIKV 287
             Y      +LGELQFAF+ FL+G   EAF  WKSL++LL  C SE  +  R +L+   I V
Sbjct:   244 YKEQPLNVLGELQFAFVCFLVGNVYEAFEHWKSLLALL--CRSEEAMKDRKELYLGLIAV 301

Query:   288 IYYQL 292
             +Y+QL
Sbjct:   302 LYHQL 306

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1915545 Aar2 "AAR2 splicing factor homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 92/305 (30%), Positives = 158/305 (51%)

Query:     1 MDPEAALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSR 60
             MDPE A +L   GAT+++L++P+ T FGID   + VGP F+G+KMIPPG+HF++YSS  +
Sbjct:     6 MDPELAKQLFFEGATVVILNMPKGTEFGIDYNSWEVGPKFRGVKMIPPGIHFLYYSSVDK 65

Query:    61 -DGKEFSPIIGFFIDAGPSEVIVRKWDQ-QXXXXXXXXXXXXARYTQAVCSLEFDKQLGP 118
              + +E  P +GFF+      + V +W+  Q                +A    + D+ LGP
Sbjct:    66 ANPREVGPRMGFFLSLKQRGLTVLRWNAVQEEVDLSPAPEAEVEAMRANLP-DLDQFLGP 124

Query:   119 YTLSQYGEWKRLSSYITKSXXXXXXXXXXXXTVTAESG---MMKNTPKSTMERALD---- 171
             Y  +   +W  L+++I+++               ++      MK+T K  + + L     
Sbjct:   125 YPYATLKKWISLTNFISEATMEKLQPESRQICAFSDVLPVLFMKHT-KDRVGQNLPLCGT 183

Query:   172 EQLKTSKFTASVDSSQKKG---CYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKN 228
             E     +  A +   + +      ++ +P  +   G    E+T  ++D +  LE++++K 
Sbjct:   184 ECRSYQEGLARLPEMRPRAGTEIRFSELPTQMFPAGATPAEITRHSMDLSYALETVLSKQ 243

Query:   229 YGGSEDTLLGELQFAFIAFLMGQSLEAFLQWKSLVSLLFGC-SEAPLHTRSQLFTMFIKV 287
             + G+   +LGELQFAF+ FL+G   EAF  WK L++LL  C SE+ +     L+   I +
Sbjct:   244 FPGNPQDVLGELQFAFVCFLLGNVYEAFEHWKRLLNLL--CRSESAMGKYHALYISLISI 301

Query:   288 IYYQL 292
             +Y+QL
Sbjct:   302 LYHQL 306

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

WB|WBGene00008639 F10B5.2 [Caenorhabditis elegans (taxid:6239)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 105/356 (29%), Positives = 165/356 (46%)

Query:     1 MDPEAALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSR 60
             + PE    + ++GA LL L  PQ + FGID + +  G  F G+KMIPPGVHFV+ S  S 
Sbjct:     5 LPPEIVDYMYRNGAFLLFLGFPQASEFGIDYKSWKTGEKFMGLKMIPPGVHFVYCSIKS- 63

Query:    61 DGKEFSPIIGFFIDAGPSEVIVRKWDQQXXXXXXXXXXXXARYTQAVCSLE-FDKQLGPY 119
                  +P IGFF +    E++V+KW+ +             + ++    L+  D  L PY
Sbjct:    64 -----APRIGFFHNFKAGEILVKKWNTESETFEDEEVPTD-QISEKKRQLKNMDSSLAPY 117

Query:   120 TLSQYGEWKRLSSYITKSXXXXXXXXXXXXTVTAESGMMKNTPKSTMERALDEQLKTSKF 179
                 Y  W  L+ +IT              T  AE   + +     ME A +++ K S F
Sbjct:   118 PYENYRSWYGLTDFITADTVERIHPILGRITSQAE---LVSLETEFMENA-EKEHKDSHF 173

Query:   180 TASVDSSQKKGCYYTS---IPRVVKCR-G--MQGEELTSLNLDKT----ELLESL--ITK 227
                VD        +T    +P ++K R G  ++ +++  L + +     E  + L  + +
Sbjct:   174 RNRVDRENPVRTRFTDQHGLP-IMKIREGYEIRFQDIPPLTVSQNRVGIEYSDRLYRLLR 232

Query:   228 NYGGSEDTLLGELQFAFIAFLMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKV 287
               GG    LL E+Q AF+ FL GQ  E F QWK ++ L+  C  + L +  +LF  FI+V
Sbjct:   233 ALGGDWKQLLAEMQIAFVCFLQGQVFEGFEQWKRIIHLMSCCPNS-LGSEKELFMSFIRV 291

Query:   288 IYYQLKYGLQKDRNGTETGASALLDDSWLSADSFLHHLCKDFFALIQDASVVDGDL 343
             +++QLK          E      +D   +S D+FL       FA ++D++    DL
Sbjct:   292 LFFQLK----------ECPTDFFVDI--VSRDNFLTTTLSMLFANVRDSAHAGDDL 335

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

SGD|S000000170 AAR2 "Component of the U5 snRNP complex" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 157 (60.3 bits), Expect = 8.6e-09, P = 8.6e-09
 Identities = 66/287 (22%), Positives = 119/287 (41%)

Query:    15 TLLLLDVPQYTLFGIDTQMFSVGPS--FKGIKMIPPG-VHFVFY----SSSSRDGKEFSP 67
             T+     P     GID   F+V  +  F GIK IP G VH + +    +SS R G  F  
Sbjct:     3 TVPFTSAPIEVTIGIDQYSFNVKENQPFHGIKDIPIGHVHVIHFQHADNSSMRYGYWFDC 62

Query:    68 IIG-FFIDAGPSEVIVRKWDQQXXXXXXXXXXXXARYTQAVCSLEFDKQLGPYTLSQYGE 126
              +G F+I   P + + +  +++                  V   + D+    Y L+++ +
Sbjct:    63 RMGNFYIQYDPKDGLYKMMEERDGAKFENIVHNFKERQMMVSYPKIDEDDTWYNLTEFVQ 122

Query:   127 WKRLSSYITKSXXXXXXXXXXXXTVTAESGMMKNTPKSTMERALDEQLKTSKFTASVDSS 186
               ++   + K             TV  E+ ++K    S++++A       SK  A  +  
Sbjct:   123 MDKIRKIVRKDENQFSYVDSSMTTVQ-ENELLK----SSLQKA------GSKMEAKNEDD 171

Query:   187 QKKGCYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKNYGGSEDTLLGELQFAFIA 246
                   YT I    +     G E+    LDK+  L +++ +    +     GELQFAF+ 
Sbjct:   172 PAHSLNYTVINFKSREAIRPGHEMEDF-LDKSYYLNTVMLQGIFKNSSNYFGELQFAFLN 230

Query:   247 FLMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLK 293
              +   +  + LQW +++ L+   +  P H   +L     +++YYQ+K
Sbjct:   231 AMFFGNYGSSLQWHAMIELICSSATVPKHMLDKLD----EILYYQIK 273

GO:0003674 "molecular_function" evidence=ND

GO:0000244 "assembly of spliceosomal tri-snRNP" evidence=IMP

GO:0005682 "U5 snRNP" evidence=IDA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

ASPGD|ASPL0000006654 AN10758 [Emericella nidulans (taxid:162425)]

 Score = 108 (43.1 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
 Identities = 28/79 (35%), Positives = 44/79 (55%)

Query:    15 TLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSRDGKEFSPIIGFFID 74
             TLL+  +P  TL GID   F+  P+F GI+ IPPG HFV+  +++  G        F++D
Sbjct:     9 TLLIPHLPPKTLVGIDLITFTSTPNFHGIRDIPPGWHFVYTGTTA--GLSLRLGGWFYVD 66

Query:    75 AGPS-------EVIVRKWD 86
              G S       +++V +W+
Sbjct:    67 RGNSTETEIGKDILVWRWN 85

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5R5N9	AAR2_PONAB	No assigned EC number	0.3121	0.8816	0.8151	yes	no
Q9D2V5	AAR2_MOUSE	No assigned EC number	0.3092	0.8816	0.8151	yes	no
Q09305	AAR2_CAEEL	No assigned EC number	0.3156	0.8901	0.8851	yes	no
Q08DJ7	AAR2_BOVIN	No assigned EC number	0.3125	0.9042	0.8359	yes	no
Q9Y312	AAR2_HUMAN	No assigned EC number	0.3121	0.8816	0.8151	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00022354001 SubName- Full=Chromosome chr14 scaffold_26, whole genome shotgun sequence; (394 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	355
pfam05282	339	pfam05282, AAR2, AAR2 protein	9e-93

>gnl|CDD|218536 pfam05282, AAR2, AAR2 protein

 Score =  280 bits (718), Expect = 9e-93
 Identities = 130/337 (38%), Positives = 177/337 (52%), Gaps = 19/337 (5%)

Query: 14  ATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSRDGKEFSPIIGFFI 73
           ATLL+LD+P+ TL GID   F+VGP+FKGIKMIPPGVHF+ YSS      E S   GFF 
Sbjct: 2   ATLLILDLPEGTLVGIDLSSFTVGPNFKGIKMIPPGVHFLHYSS--AKNGESSLRYGFFF 59

Query: 74  DAGPSEVIVRKWDQQEERLVKVSEEEEARYTQAVCSLEFDKQLGPYTLSQYGE-WKRLSS 132
              P EV+V KWD ++E LV   E EE  Y +     EFD+ LGPY      + WK L+S
Sbjct: 60  YVKPGEVLVLKWDSKDETLVPEEESEEEDYRERANLGEFDQYLGPYPYEDESKDWKSLTS 119

Query: 133 YITKSIIERIEPIGGEITVTAE--SGMMKNTPKSTMERALDEQLKTSKFTASVDSSQKKG 190
           YIT+ ++ RIEPI G    +    S       +        E+        + +    + 
Sbjct: 120 YITEEVLSRIEPINGTSRESWYVDSSSTTKE-EDRSLPEESEKKSEDDSGINKEVEGSE- 177

Query: 191 CYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKNYGGSEDTLLGELQFAFIAFLMG 250
            Y+T IP+     G    E+T  +LDK+  LE +I + Y  +E  LLGELQFAF+ FL+ 
Sbjct: 178 LYFTPIPKRKWPEGATPAEITEDSLDKSWYLEEVIAQEYDNNESLLLGELQFAFLNFLLL 237

Query: 251 QSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLKYGLQKDRNGTETGASAL 310
            + E+F QWK L+ LL       +    +LF   +KV+Y+QLK          E   S  
Sbjct: 238 GNYESFEQWKRLLELLCNSESL-VTKHPELFIKLLKVLYHQLK----------ELP-SDF 285

Query: 311 LDDSWLSADSFLHHLCKDFFALIQDASVVDGDLLTWV 347
             D+ LS D+FL  L K+ F +  D  +V G L + +
Sbjct: 286 FFDTLLSEDNFLLSLLKNLFEIEVDDELVRGTLKSKL 322

This family consists of several eukaryotic AAR2-like proteins. The yeast protein AAR2 is involved in splicing pre-mRNA of the a1 cistron and other genes that are important for cell growth. Length = 339

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	355
KOG3937	371	consensus mRNA splicing factor [RNA processing and	100.0
PF05282	362	AAR2: AAR2 protein; InterPro: IPR007946 This famil	100.0

>KOG3937 consensus mRNA splicing factor [RNA processing and modification]

Probab=100.00  E-value=1.7e-92  Score=668.06  Aligned_cols=331  Identities=41%  Similarity=0.648  Sum_probs=296.4

Q ss_pred             CCHHHHHHHHhcCCEEEEccCCCceEEeeeccccccCCCeeeEeecCCcceEEEEecCCCCCCCCCceEEEEEEcCCCeE
Q 018457            1 MDPEAALELVKHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSRDGKEFSPIIGFFIDAGPSEV   80 (355)
Q Consensus         1 md~~~a~~l~~~g~~llll~lP~gt~~GID~~sf~~g~~F~GIK~IPpG~Hfi~~s~~~~~g~~~~~R~Gff~~~~~~ev   80 (355)
                      ||||.|.+|+++|+||+++|+|.+|+||||++||++||+|+||||||||+||||||+..+.|    ||+|||+.++++++
T Consensus         1 mdpe~a~~l~~~gatl~flg~P~~t~~GID~~s~~vgpkF~GIKmIPpGVHfv~yss~~~ag----pr~Gff~~~h~~~~   76 (371)
T KOG3937|consen    1 MDPELALRLLADGATLVFLGVPQGTEFGIDQYSYEVGPKFRGIKMIPPGVHFVHYSSADPAG----PRIGFFHDVHPGEI   76 (371)
T ss_pred             CCHHHHHHHHhcCCEEEEecCccceEecceeeeeecCCCCCCccccCCceEEEEeecCCCCC----CeeEEEEEecCCce
Confidence            99999999999999999999999999999999999999999999999999999999876654    99999999999999


Q ss_pred             EEEEecccccccccCChH--HHHHHHHhhcchhhhccCccccchhhhhHHHhhccCCHhhhccccccCCceeeeeccccc
Q 018457           81 IVRKWDQQEERLVKVSEE--EEARYTQAVCSLEFDKQLGPYTLSQYGEWKRLSSYITKSIIERIEPIGGEITVTAESGMM  158 (355)
Q Consensus        81 ~V~kWd~~~E~l~~~~~~--~~~r~~~~l~~~~~d~~L~pYp~~~~~~W~~LT~~It~~~l~Ri~p~~g~i~~~~e~~~~  158 (355)
                      +|++||++.|++...++.  +.++.+.|++  ++|+.|+|||++.++.|..||+|||.++|+||.|.+|+|++..|+...
T Consensus        77 ~v~~wd~~~E~~~~~~~~e~e~~~~~~nl~--e~d~~l~pYpy~~~~~W~~LT~fIt~d~Veri~p~~g~i~~~~d~~~~  154 (371)
T KOG3937|consen   77 YVRKWDTKDETLKMEEEPEVERDEIRHNLK--ELDMMLAPYPYEEYKTWYNLTNFITEDTVERIVPTEGNIFSYVDSSSL  154 (371)
T ss_pred             EEEeccccchhhhcccCchhHHHHHHHHHH--HHhhccCCCChhhhhhHHHHhhhhhHHHHHhheecCCcEEEEEeeeee
Confidence            999999999988743333  3356667776  899999999999999999999999999999999999999999887665


Q ss_pred             cCCCCchHHHHHHHHhhhcccccccCCCCCCC--ceecccCCccccCCCChhhhhhhcCchHHHHHHHHHhhcCCChhhH
Q 018457          159 KNTPKSTMERALDEQLKTSKFTASVDSSQKKG--CYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKNYGGSEDTL  236 (355)
Q Consensus       159 ~~~~~t~~E~~l~~~~~~~~~~~~~~~~~~~~--~~ft~Ip~~~~~~~a~~~eiT~~~~DkS~~L~~vl~~~~~~~~~~l  236 (355)
                      .+.+...++..+..+.+..+. ..|++++.++  +|||.||+..++.|++|.|+|+++|||||+|+.|+.+.+.+++..+
T Consensus       155 ~~~~~v~~~~~~~~~~s~~e~-~lp~~k~~~g~~lrft~iP~~~~~~~a~g~E~s~~~lDksy~l~~vl~~~~~~n~~~l  233 (371)
T KOG3937|consen  155 TVGDRVLQEISLQKRGSKDEG-KLPDLKPRAGTELRFTVIPFLSVPQGATGAEMSKHALDKSYLLETVLLGGWFDNPDNL  233 (371)
T ss_pred             cCCcccccccccccccccccc-cccccCCCcccceeeeecCcccccCCCCchhhhhhhhhHHHHHHHHHhcccCCCHHHH
Confidence            555555444444333222211 2567777666  9999999999999999999999999999999999999999999999


Q ss_pred             HHhHhHHHHHHHhhcchHHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHhcccccCCCCCCCCCcccccCCcc
Q 018457          237 LGELQFAFIAFLMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLKYGLQKDRNGTETGASALLDDSWL  316 (355)
Q Consensus       237 LGELQfaFl~fl~g~s~~sfeQWk~Ll~Ll~~c~~a~i~~~~~lf~~fi~vL~~QL~~~~~~~~~~~~~~~~f~~d~~~~  316 (355)
                      ||||||||||||+|+||+||+|||+||+|||+|+.+ +.+|+.+|.+||++|++||+++|          +|||+++  +
T Consensus       234 lgELQfAFv~fl~g~~yesfeqWk~ml~LL~~S~a~-~~kh~~ly~kfievlyhQLk~~p----------~dl~~~~--l  300 (371)
T KOG3937|consen  234 LGELQFAFVCFLFGQSYESFEQWKRMLSLLLCSSAA-VPKHKELYMKFIEVLYHQLKELP----------EDLFVSI--L  300 (371)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc-ccccHHHHHHHHHHHHHHhccCh----------HHhhcch--h
Confidence            999999999999999999999999999999966655 89999999999999999999998          5899977  9


Q ss_pred             CCCchHHHHHHHHHHHhhcccCCchhhHHHHhhhc
Q 018457          317 SADSFLHHLCKDFFALIQDASVVDGDLLTWVSAKH  351 (355)
Q Consensus       317 s~~nfL~~~l~~f~~~~~~~~~~~~~l~~~~~~~~  351 (355)
                      +++|||+.+|+.|++++.+++.|+++|++|+++++
T Consensus       301 ~~dn~l~~~l~~~f~n~~~~s~~~~~L~k~~~~fk  335 (371)
T KOG3937|consen  301 SEDNFLTSLLSSLFANVLDGSEAIMDLLKKAEKFK  335 (371)
T ss_pred             ccccchHHHHHHHHHHhhccchhhhhhHHHHHHHH
Confidence            99999999999999999999999999999999875

>PF05282 AAR2: AAR2 protein; InterPro: IPR007946 This family consists of several eukaryotic AAR2-like proteins

Probab=100.00  E-value=2.6e-84  Score=639.78  Aligned_cols=329  Identities=46%  Similarity=0.719  Sum_probs=207.7

Q ss_pred             hcCCEEEEccCCCceEEeeeccccccCCCeeeEeecCCcceEEEEecCCCCCCCCCceEEEEEEcCCCeEEEEEeccccc
Q 018457           11 KHGATLLLLDVPQYTLFGIDTQMFSVGPSFKGIKMIPPGVHFVFYSSSSRDGKEFSPIIGFFIDAGPSEVIVRKWDQQEE   90 (355)
Q Consensus        11 ~~g~~llll~lP~gt~~GID~~sf~~g~~F~GIK~IPpG~Hfi~~s~~~~~g~~~~~R~Gff~~~~~~ev~V~kWd~~~E   90 (355)
                      ++||+||++|||+||+||||+++|++||+|+||||||||+||||||+..+++ +.++|+|||+++++++|+|+|||+++|
T Consensus         1 ~~g~~llll~vP~gt~~GID~~sf~~~~~F~GIK~IPpG~Hfi~~s~~~~~~-~~~~R~G~f~~~~~~~v~V~kWd~~~E   79 (362)
T PF05282_consen    1 EEGATLLLLDVPEGTEFGIDYKSFTVGPNFKGIKMIPPGVHFIHYSSSSKNG-ESSPRYGFFFNFKPGEVIVRKWDPENE   79 (362)
T ss_dssp             ---EEEEBS---S-EEEEETTEEEEE-TT--EEEEE-TT-EEEEEE---ETT-ECCEEEEEEE-CCC--EEEEEEETTTT
T ss_pred             CcceEEEEeCCCCCcEEEEcceEEEcCCCceEEecCCCCceEEEEecccCCC-CcCceEEEEEEeeCCEEEEEEeCCCcC
Confidence            5899999999999999999999999999999999999999999999655555 789999999999999999999999999


Q ss_pred             ccccCCh--HHHHHHHHhhcchhhhccCccccchhhh-hHHHhhccCCHhhhccccccCCceeeeec----cccccCCCC
Q 018457           91 RLVKVSE--EEEARYTQAVCSLEFDKQLGPYTLSQYG-EWKRLSSYITKSIIERIEPIGGEITVTAE----SGMMKNTPK  163 (355)
Q Consensus        91 ~l~~~~~--~~~~r~~~~l~~~~~d~~L~pYp~~~~~-~W~~LT~~It~~~l~Ri~p~~g~i~~~~e----~~~~~~~~~  163 (355)
                      +|...++  ++.++++...+..++|++|+|||++.+. +|++||+|||+++|+||.|.+|.|+...+    ...+.+.++
T Consensus        80 ~l~~~~~~~~~~~~~~~~~~l~~~d~~L~pYP~~~~~~~W~~LT~~It~~~l~ri~p~~~~i~~~~~~~~~~~~v~~~~~  159 (362)
T PF05282_consen   80 DLVDEPESEEEEERYRQRVNLKEFDKYLGPYPYEDYSDKWKSLTSYITEEVLERITPVNGTISSATESPSESWYVDSSSS  159 (362)
T ss_dssp             EEEEEEE----HHHHHHHHCHHHHCTTSEE----TTT-HHHHHHTT--HHHHHHHC--T---------T-SSEEEETT-E
T ss_pred             ceeccccccchHHHHHHHHhHHHHHhhcCCcCCchhhchHHHHhhhCCHHHHhhhcCCCccccccccccccccccCCCcC
Confidence            9987555  3333443333334999999999998876 99999999999999999999988877552    112222222


Q ss_pred             chHHHHHHH------HhhhcccccccCCCCCCCceecccCCccccCCCChhhhhhhcCchHHHHHHHH-------HhhcC
Q 018457          164 STMERALDE------QLKTSKFTASVDSSQKKGCYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLI-------TKNYG  230 (355)
Q Consensus       164 t~~E~~l~~------~~~~~~~~~~~~~~~~~~~~ft~Ip~~~~~~~a~~~eiT~~~~DkS~~L~~vl-------~~~~~  230 (355)
                      +..|.....      ..........+..++...++||.||+..+|+|++|+|+|+++|||||+|+++|       .+.++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ft~i~~~~~~~~~~~~e~T~~~~DkS~~L~~vi~~~~~~~~~~~~  239 (362)
T PF05282_consen  160 SKEENRSLPELSESRKKSEDDPSIQSEQDPGTELRFTPIPKRKWPPGATPSERTEDSLDKSWYLEEVIQRGYIELPKDYG  239 (362)
T ss_dssp             ECCCCCCT---------------------GGGCE-------TTSCCCS-TT-HHHHHH-THHHHHCCC-------CCCCC
T ss_pred             ccccccccccccccccccccccccccccCCCceEEEEeeecccCCCCCCHHHHHHHhccHHHHHHHHHHhhhcccccccC
Confidence            222221100      00000000001101245699999998999999999999999999999999999       77889


Q ss_pred             CChhhHHHhHhHHHHHHHhhcchHHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHhcccccCCCCCCCCCccc
Q 018457          231 GSEDTLLGELQFAFIAFLMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLKYGLQKDRNGTETGASAL  310 (355)
Q Consensus       231 ~~~~~lLGELQfaFl~fl~g~s~~sfeQWk~Ll~Ll~~c~~a~i~~~~~lf~~fi~vL~~QL~~~~~~~~~~~~~~~~f~  310 (355)
                      +++.+|||||||||||||+|+||+||+|||+||+|||+|+++ +.+||+||.+|+++|++||+.+|          +|||
T Consensus       240 ~~~~~lLGELQfaFv~fl~~~n~~s~eQWk~ll~Ll~~~~~~-v~~~~~l~~~~l~~L~~QL~~~p----------~d~~  308 (362)
T PF05282_consen  240 GDEDELLGELQFAFVNFLLGQNYSSFEQWKSLLELLCNCESA-VSEHPDLFIKFLRVLHAQLKELP----------EDFF  308 (362)
T ss_dssp             SSHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHT--S----HH--HHHHHHHHHHHHHHCCG----------HCCC
T ss_pred             CCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcc----------hhhe
Confidence            999999999999999999999999999999999999999888 88999999999999999999987          4788


Q ss_pred             ccCCccCCCchHHHHHHHHHHHhhcccCCchhhHHHHhhhc
Q 018457          311 LDDSWLSADSFLHHLCKDFFALIQDASVVDGDLLTWVSAKH  351 (355)
Q Consensus       311 ~d~~~~s~~nfL~~~l~~f~~~~~~~~~~~~~l~~~~~~~~  351 (355)
                      +|+++++++|||+++|+.++.++.+...++++|++++++++
T Consensus       309 ~d~~~~~~~~fl~~~l~~~~~~~~~~~~~~~~l~~~~~~l~  349 (362)
T PF05282_consen  309 FDISILSSDNFLRKLLKNLFENESDNTEVQEALKKAFEKLE  349 (362)
T ss_dssp             --HHHHHHTSTTCCC-HHHHHHHHH----------------
T ss_pred             eccccccCcchHHHHHHHHHhhhhccccccccccccccccc
Confidence            88767899999999999999988888888888888887754

The Saccharomyces cerevisiae protein AAR2 is involved in splicing pre-mRNA of the a1 cistron and other genes that are important for cell growth [].; PDB: 3SBT_B 3SBS_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	355
3zef_A	355	Crystal Structure Of Prp8:aar2 Complex: Second Crys		2e-09
3sbt_B	363	Crystal Structure Of A Aar2-prp8 Complex Length = 3		2e-09
4i43_A	384	Crystal Structure Of Prp8:aar2 Complex Length = 384		2e-09

>pdb|3ZEF|A Chain A, Crystal Structure Of Prp8:aar2 Complex: Second Crystal Form At 3.1 Angstrom Resolution Length = 355

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 116/287 (40%), Gaps = 24/287 (8%)
Query: 15  TLLLLDVPQYTLFGIDTQMFSVGPS--FKGIKMIPPG-VHFVFY----SSSSRDGKEFSP 67
           T+     P     GID   F+V  +  F GIK IP G VH + +    +SS R G  F  
Sbjct: 3   TVPFTSAPIEVTIGIDQYSFNVKENQPFHGIKDIPIGHVHVIHFQHADNSSMRYGYWFDC 62
Query: 68  IIG-FFIDAGPSEVIVRKWDQQXXXXXXXXXXXXARYTQAVCSLEFDKQLGPYTLSQYGE 126
            +G F+I   P + + +  +++                  V   + D+    Y L+++ +
Sbjct: 63  RMGNFYIQYDPKDGLYKMMEERDGAKFENIVHNFKERQMMVSYPKIDEDDTWYNLTEFVQ 122
Query: 127 WKRLSSYITKSXXXXXXXXXXXXTVTAESGMMKNTPKSTMERALDEQLKTSKFTASVDSS 186
             ++   + K             TV     +     KS++++A       SK  A  +  
Sbjct: 123 MDKIRKIVRKDENQFSYVDSSMTTVQENELL-----KSSLQKA------GSKMEAKNEDD 171
Query: 187 QKKGCYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKNYGGSEDTLLGELQFAFIA 246
                 YT I    +     G E+    LDK+  L +++ +    +     GELQFAF+ 
Sbjct: 172 PAHSLNYTVINFKSREAIRPGHEMEDF-LDKSYYLNTVMLQGIFKNSSNYFGELQFAFLN 230
Query: 247 FLMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLK 293
            +   +  + LQW +++ L+   +  P H   +L     +++YYQ+K
Sbjct: 231 AMFFGNYGSSLQWHAMIELICSSATVPKHMLDKL----DEILYYQIK 273

>pdb|3SBT|B Chain B, Crystal Structure Of A Aar2-prp8 Complex Length = 363

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 116/287 (40%), Gaps = 24/287 (8%)
Query: 15  TLLLLDVPQYTLFGIDTQMFSVGPS--FKGIKMIPPG-VHFVFY----SSSSRDGKEFSP 67
           T+     P     GID   F+V  +  F GIK IP G VH + +    +SS R G  F  
Sbjct: 3   TVPFTSAPIEVTIGIDQYSFNVKENQPFHGIKDIPIGHVHVIHFQHADNSSMRYGYWFDC 62
Query: 68  IIG-FFIDAGPSEVIVRKWDQQXXXXXXXXXXXXARYTQAVCSLEFDKQLGPYTLSQYGE 126
            +G F+I   P + + +  +++                  V   + D+    Y L+++ +
Sbjct: 63  RMGNFYIQYDPKDGLYKMMEERDGAKFENIVHNFKERQMMVSYPKIDEDDTWYNLTEFVQ 122
Query: 127 WKRLSSYITKSXXXXXXXXXXXXTVTAESGMMKNTPKSTMERALDEQLKTSKFTASVDSS 186
             ++   + K             TV     +     KS++++A       SK  A  +  
Sbjct: 123 MDKIRKIVRKDENQFSYVDSSMTTVQENELL-----KSSLQKA------GSKMEAKNEDD 171
Query: 187 QKKGCYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKNYGGSEDTLLGELQFAFIA 246
                 YT I    +     G E+    LDK+  L +++ +    +     GELQFAF+ 
Sbjct: 172 PAHSLNYTVINFKSREAIRPGHEMEDF-LDKSYYLNTVMLQGIFKNSSNYFGELQFAFLN 230
Query: 247 FLMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLK 293
            +   +  + LQW +++ L+   +  P H   +L     +++YYQ+K
Sbjct: 231 AMFFGNYGSSLQWHAMIELICSSATVPKHMLDKL----DEILYYQIK 273

>pdb|4I43|A Chain A, Crystal Structure Of Prp8:aar2 Complex Length = 384

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 116/287 (40%), Gaps = 24/287 (8%)
Query: 15  TLLLLDVPQYTLFGIDTQMFSVGPS--FKGIKMIPPG-VHFVFY----SSSSRDGKEFSP 67
           T+     P     GID   F+V  +  F GIK IP G VH + +    +SS R G  F  
Sbjct: 3   TVPFTSAPIEVTIGIDQYSFNVKENQPFHGIKDIPIGHVHVIHFQHADNSSMRYGYWFDC 62
Query: 68  IIG-FFIDAGPSEVIVRKWDQQXXXXXXXXXXXXARYTQAVCSLEFDKQLGPYTLSQYGE 126
            +G F+I   P + + +  +++                  V   + D+    Y L+++ +
Sbjct: 63  RMGNFYIQYDPKDGLYKMMEERDGAKFENIVHNFKERQMMVSYPKIDEDDTWYNLTEFVQ 122
Query: 127 WKRLSSYITKSXXXXXXXXXXXXTVTAESGMMKNTPKSTMERALDEQLKTSKFTASVDSS 186
             ++   + K             TV     +     KS++++A       SK  A  +  
Sbjct: 123 MDKIRKIVRKDENQFSYVDSSMTTVQENELL-----KSSLQKA------GSKMEAKNEDD 171
Query: 187 QKKGCYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKNYGGSEDTLLGELQFAFIA 246
                 YT I    +     G E+    LDK+  L +++ +    +     GELQFAF+ 
Sbjct: 172 PAHSLNYTVINFKSREAIRPGHEMEDF-LDKSYYLNTVMLQGIFKNSSNYFGELQFAFLN 230
Query: 247 FLMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLK 293
            +   +  + LQW +++ L+   +  P H   +L     +++YYQ+K
Sbjct: 231 AMFFGNYGSSLQWHAMIELICSSATVPKHMLDKL----DEILYYQIK 273

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	355
3sbt_B	363	A1 cistron-splicing factor AAR2; rnaseh like domai	1e-79

>3sbt_B A1 cistron-splicing factor AAR2; rnaseh like domain, VHS like domain, U5 snRNP assembly; 1.80A {Saccharomyces cerevisiae} PDB: 3sbs_A Length = 363

 Score =  247 bits (631), Expect = 1e-79
 Identities = 61/320 (19%), Positives = 120/320 (37%), Gaps = 29/320 (9%)

Query: 15  TLLLLDVPQYTLFGIDTQMFSV--GPSFKGIKMIPPG-VHFVFYSSSSRDGKEFSPIIGF 71
           T+     P     GID   F+V     F GIK IP G VH + +  +       S   G+
Sbjct: 3   TVPFTSAPIEVTIGIDQYSFNVKENQPFHGIKDIPIGHVHVIHFQHAD----NSSMRYGY 58

Query: 72  FIDAGPSEVIVRKWDQQEERLVKVSEEEEARYTQAVCSLEFDKQLGPY-TLSQYGEWKRL 130
           + D       ++ +D ++     + E + A++   V + +  + +  Y  + +   W  L
Sbjct: 59  WFDCRMGNFYIQ-YDPKDGLYKMMEERDGAKFENIVHNFKERQMMVSYPKIDEDDTWYNL 117

Query: 131 SSYITKSIIERIEPIGGEITVTAESGMMKNTPKSTMERALDEQLKTSKFTASVDSSQKKG 190
           + ++    I +I           +S M        ++ +L +    SK  A  +      
Sbjct: 118 TEFVQMDKIRKIVRKDENQFSYVDSSMTTVQENELLKSSLQK--AGSKMEAKNEDDPAHS 175

Query: 191 CYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKNYGGSEDTLLGELQFAFIAFLMG 250
             YT I    +   ++        LDK+  L +++ +    +     GELQFAF+  +  
Sbjct: 176 LNYTVINFKSR-EAIRPGHEMEDFLDKSYYLNTVMLQGIFKNSSNYFGELQFAFLNAMFF 234

Query: 251 QSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLKYGLQKDRNGTETGASAL 310
            +  + LQW +++ L+   +  P      +     +++YYQ+K  L +            
Sbjct: 235 GNYGSSLQWHAMIELICSSATVP----KHMLDKLDEILYYQIKT-LPEQ----------- 278

Query: 311 LDDSWLSADSFLHHLCKDFF 330
             D  L+ +   +      F
Sbjct: 279 YSDILLN-ERVWNICLYSSF 297

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	355
3sbt_B	363	A1 cistron-splicing factor AAR2; rnaseh like domai	100.0

>3sbt_B A1 cistron-splicing factor AAR2; rnaseh like domain, VHS like domain, U5 snRNP assembly; 1.80A {Saccharomyces cerevisiae} PDB: 3sbs_A

Probab=100.00  E-value=1.5e-73  Score=556.23  Aligned_cols=288  Identities=20%  Similarity=0.313  Sum_probs=235.6

Q ss_pred             EEEEccCCCceEEeeecccccc--CCCeeeEeecCCc-ceEEEEecCCCCCCCCCceEEEEEEcCCCeEEEEEecccccc
Q 018457           15 TLLLLDVPQYTLFGIDTQMFSV--GPSFKGIKMIPPG-VHFVFYSSSSRDGKEFSPIIGFFIDAGPSEVIVRKWDQQEER   91 (355)
Q Consensus        15 ~llll~lP~gt~~GID~~sf~~--g~~F~GIK~IPpG-~Hfi~~s~~~~~g~~~~~R~Gff~~~~~~ev~V~kWd~~~E~   91 (355)
                      |||++|||+|++||||+++|++  ||+|+|||||||| +||||||++ +.   .++|+|||+++++++|+ ++||+++|+
T Consensus         3 tlllldlP~gt~~GID~~sftv~~g~~F~GIK~IPpG~~Hfih~s~~-e~---~s~R~Gfw~~~~~~~v~-~~WD~~~E~   77 (363)
T 3sbt_B            3 TVPFTSAPIEVTIGIDQYSFNVKENQPFHGIKDIPIGHVHVIHFQHA-DN---SSMRYGYWFDCRMGNFY-IQYDPKDGL   77 (363)
T ss_dssp             EEEBSCCCSCEEEEETTEEEEECTTCCCCEEEEECTTSCEEEEEEET-TE---EEEEEEEEECGGGCEEE-EEEETTTTE
T ss_pred             eEEecCCCCCcEEeeeccEEEcCCCCCCcceecCCCCCCEEEEEecC-CC---CCcceEEEEEeeCCeEE-EEEcCCcce
Confidence            7999999999999999999999  7999999999999 999999985 22   27999999999999999 799999999


Q ss_pred             cccCChHHHHHHHHhhcchhhhccCccccch-hhhhHHHhhccCCHhhhccccccCCceeeeeccccccCCCCchHHH-H
Q 018457           92 LVKVSEEEEARYTQAVCSLEFDKQLGPYTLS-QYGEWKRLSSYITKSIIERIEPIGGEITVTAESGMMKNTPKSTMER-A  169 (355)
Q Consensus        92 l~~~~~~~~~r~~~~l~~~~~d~~L~pYp~~-~~~~W~~LT~~It~~~l~Ri~p~~g~i~~~~e~~~~~~~~~t~~E~-~  169 (355)
                      +..+++++.+||++++++++||++|+|||.+ .++.|++||+|||+++|+||.|.+|.++..+++.     ..+..|. .
T Consensus        78 l~~~~~~e~~r~~~~l~~~~fd~~L~pYP~~~~~~~W~~LT~~It~~~l~Ri~~~~g~~~~~vdSs-----~~s~eE~~~  152 (363)
T 3sbt_B           78 YKMMEERDGAKFENIVHNFKERQMMVSYPKIDEDDTWYNLTEFVQMDKIRKIVRKDENQFSYVDSS-----MTTVQENEL  152 (363)
T ss_dssp             EEEEEECCHHHHHHHHHHHHHTTCSEECCCCTTCCHHHHHHTTCCHHHHHHHSCCTTCSSEEEETT-----CEETTTSTT
T ss_pred             eccCcchHHHHHHHHHHhhhhcccccCCCCccchhhHHHHHhhCCHHHHhhccCCCCCeEEEecCC-----CcchhhHHH
Confidence            9876666678999999988889999999998 9999999999999999999999988876555432     1111121 1


Q ss_pred             HHHHhhhcccc-ccc-CCCCCCCceecccCCccccCCCChhhhhhhcCchHHHHHHHHHhhcCCChhhHHHhHhHHHHHH
Q 018457          170 LDEQLKTSKFT-ASV-DSSQKKGCYYTSIPRVVKCRGMQGEELTSLNLDKTELLESLITKNYGGSEDTLLGELQFAFIAF  247 (355)
Q Consensus       170 l~~~~~~~~~~-~~~-~~~~~~~~~ft~Ip~~~~~~~a~~~eiT~~~~DkS~~L~~vl~~~~~~~~~~lLGELQfaFl~f  247 (355)
                      +.+.++..... ..+ ...+.+.++||.||.+ ++.+++|+|+|+++|||||+|+++|.+.+.++..+||||||||||++
T Consensus       153 L~~~L~~~~~~~~~~~~~~~~~~l~Ft~i~~k-~~~~~~~~e~T~~~~D~S~~L~~li~~~~~~~~~~lLGELQfaFv~~  231 (363)
T 3sbt_B          153 LKSSLQKAGSKMEAKNEDDPAHSLNYTVINFK-SREAIRPGHEMEDFLDKSYYLNTVMLQGIFKNSSNYFGELQFAFLNA  231 (363)
T ss_dssp             C-----------------CGGGEECCCCCCTT-STTTCCTTCHHHHHHCTHHHHHCCCCCCCCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhCccccccccCCCCCceeeccccCCC-CcccCChHHHHHHhhhHHHHHHHHHHhhccCChHHHHHHHHHHHHHH
Confidence            22222111000 001 1123455999999854 45799999999999999999999998764444599999999999955


Q ss_pred             HhhcchHHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHhcccccCCCCCCCCCcccccCCccCCCchHHHHHH
Q 018457          248 LMGQSLEAFLQWKSLVSLLFGCSEAPLHTRSQLFTMFIKVIYYQLKYGLQKDRNGTETGASALLDDSWLSADSFLHHLCK  327 (355)
Q Consensus       248 l~g~s~~sfeQWk~Ll~Ll~~c~~a~i~~~~~lf~~fi~vL~~QL~~~~~~~~~~~~~~~~f~~d~~~~s~~nfL~~~l~  327 (355)
                      ++.+||+||||||+||+|||+|+.+ .   |.||.+||++|++||+++|          +|| +|+  ++++|||+++|.
T Consensus       232 ~llgn~~s~eQWk~Ll~Llc~s~~~-~---~~l~~~~l~~L~~QL~~~P----------~df-~D~--~~~~~~l~~~L~  294 (363)
T 3sbt_B          232 MFFGNYGSSLQWHAMIELICSSATV-P---KHMLDKLDEILYYQIKTLP----------EQY-SDI--LLNERVWNICLY  294 (363)
T ss_dssp             HHHCCHHHHHHHHHHHHHHHTCSCC-C---HHHHHHHHHHHHHHHHHSC----------GGG-HHH--HCCHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHHhcchhh-h---HHHHHHHHHHHHHHHHhCC----------HHH-hhh--hcchhHHHHHHH
Confidence            5444499999999999999999985 3   7999999999999999998          478 899  999999999999


Q ss_pred             HHH
Q 018457          328 DFF  330 (355)
Q Consensus       328 ~f~  330 (355)
                      ++|
T Consensus       295 ~~~  297 (363)
T 3sbt_B          295 SSF  297 (363)
T ss_dssp             TST
T ss_pred             HHh
Confidence            986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00