Citrus Sinensis ID: 018467

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-----
MKEKISAATEEVKGTFRTGSTDTSAKHDDDVRDGFKASSGEEKQKQTVSSDTAETFYGKLKSSISSPKFTLAFQKLKEAKVVDLAKKGYDIVKDELSGSPSKRKHLEYTPSPSWTGEKSTRTDLVVTPSKKSMWSKLKEKMQGYPVFKRITGISEPVVTKGQEIAEDVRERWETSDNPIVHKIQDMNETIFQETDAAASIKEIRRRDPSFSLPDFVSEVQEAIRPVLSAYMKGDVETLKKYCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEVEVRETKMMGSSPIIIVAFQTQQIYCVRDKHGTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLYPIWKLREMQQLGVQALI
ccHHHHHHHHHHHHHHHcccccccccccHHHHHcccccccccccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEcccccHHHHHHHHHHccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHccHHHHHHHHHHHHHHHHcccEEEcEEEEEEEEEEEEEEEcccccEEEEEEEEEEEEEEEcccccEEccccccEEEEEEEEEEEEEcccccccccccccEEEEHHHHccccccc
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccccccHHHHcccccccccEEEccccHcccEEEccccccHHHHHHHHHccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcHHHHHHHHHHHHHHHHccccEccEEEEcccEEEEEEEEcccccEEEEEEEEEEEEEEEcccccEEEcccHHEEEEEEEEEEEEccccccccccccccHHHHHHHHcccHHcc
MKEKISAATEEVkgtfrtgstdtsakhdddvrdgfkassgeekqkqtvssDTAETFYGKlkssisspKFTLAFQKLKEAKVVDLAKKGYDivkdelsgspskrkhleytpspswtgekstrtdlvvtpskKSMWSKLKEKmqgypvfkritgisepvvtkgQEIAEDVRERwetsdnpivhKIQDMNETIFQETDAAASIKEirrrdpsfslpdfVSEVQEAIRPVLSAYMKGDVEtlkkycspeviERCKAEHTAYqshgiffdnrilhvSEVEVRetkmmgssPIIIVAFQTQQiycvrdkhgtiteggkdTIQTVYYAWAMQQVDAeelgedvlypIWKLREMQQLGVQALI
mkekisaateevkgtfrtgstdtsakhdddvrdgfkassgeekqkqtvssdtaETFYGklkssisspKFTLAFQKLKEAKVVDLAKKGYDIVkdelsgspskrkhleytpspswtgekstrtdlvvtpskksmwskLKEKMQGYPVfkritgisepvvtkgqeIAEDVrerwetsdnpivHKIQDMNETIFQETDAAASIKEIRRRDPSFSLPDFVSEVQEAIRPVLSAYMKGDVETLKKYCSPEVIERCKAEHTAYqshgiffdnriLHVSEVEVRETKMMGSSPIIIVAFQTQQIYCVRDKHGTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLYPIWKLREMQQLGVQALI
MKEKISAATEEVKGTFRTGSTDTSAKHDDDVRDGFKASSGEEKQKQTVSSDTAETFYGKLKSSISSPKFTLAFQKLKEAKVVDLAKKGYDIVKDELSGSPSKRKHLEYTPSPSWTGEKSTRTDLVVTPSKKSMWSKLKEKMQGYPVFKRITGISEPVVTKGQEIAEDVRERWETSDNPIVHKIQDMNETIFQETDAAASIKEIRRRDPSFSLPDFVSEVQEAIRPVLSAYMKGDVETLKKYCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEVEVRETKMMGSSPIIIVAFQTQQIYCVRDKHGTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLYPIWKLREMQQLGVQALI
*******************************************************************KFTLAFQKLKEAKVVDLAKKGYDIV************************************************MQGYPVFKRITGISEPVVTKGQEIAEDVRERWET*DNPIVHKIQDMNETIFQ******************SLPDFVSEVQEAIRPVLSAYMKGDVETLKKYCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEVEVRETKMMGSSPIIIVAFQTQQIYCVRDKHGTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLYPIWKLREMQQL******
*****S*********************************************************************************************************************************************K***GIS***********************PIVHKIQDMNETIFQETDAAASIKEIRRRDPSFSLPDFVSEVQEAIRPVLSAYMKGDVETLKKYCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEVEVRETKMMGSSPIIIVAFQTQQIYCVRDKHGTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLYPIWKLREMQQLG*QA*I
*************GTFRTGSTDTSAKHDDDVRDGF****************TAETFYGKLKSSISSPKFTLAFQKLKEAKVVDLAKKGYDIVKDELSGSPSKRKHLEYTPSPSWTGEKSTRTDLVVTPSKKSMWSKLKEKMQGYPVFKRITGISEPVVTKGQEIAEDVRERWETSDNPIVHKIQDMNETIFQETDAAASIKEIRRRDPSFSLPDFVSEVQEAIRPVLSAYMKGDVETLKKYCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEVEVRETKMMGSSPIIIVAFQTQQIYCVRDKHGTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLYPIWKLREMQQLGVQALI
*K**ISAATEEVKGTFRTGSTDTSAKHDDDVRDGFKASSGEEKQKQTV***************************LKEAKVVDLAKKGYDIVKDELS************************TDLVVTPSKKSMWSKLKEKMQGYPVFKRITGISEPVVTKGQEIAEDVRERWETSDNPIVHKIQDMNETIFQETDAAASIKEIRRRDPSFSLPDFVSEVQEAIRPVLSAYMKGDVETLKKYCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEVEVRETKMMGSSPIIIVAFQTQQIYCVRDKHGTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLYPIWKLREMQQLGV****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MKEKISAATEEVKGTFRTGSTDTSAKHDDDVRDGFKASSGEEKQKQTVSSDTAETFYGKLKSSISSPKFTLAFQKLKEAKVVDLAKKGYDIVKDELSGSPSKRKHLEYTPSPSWTGEKSTRTDLVVTPSKKSMWSKLKEKMQGYPVFKRITGISEPVVTKGQEIAEDVRERWETSDNPIVHKIQDMNETIFQETDAAASIKEIRRRDPSFSLPDFVSEVQEAIRPVLSAYMKGDVETLKKYCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEVEVRETKMMGSSPIIIVAFQTQQIYCVRDKHGTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLYPIWKLREMQQLGVQALI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query355 2.2.26 [Sep-21-2011]
Q5XF06469 Mitochondrial import inne yes no 0.977 0.739 0.660 1e-139
Q1PF33474 Mitochondrial import inne no no 0.985 0.738 0.621 1e-131
O35857452 Mitochondrial import inne yes no 0.495 0.389 0.276 1e-18
O43615452 Mitochondrial import inne yes no 0.487 0.382 0.281 3e-18
O35094453 Mitochondrial import inne yes no 0.495 0.388 0.271 5e-18
O60084427 Mitochondrial import inne yes no 0.464 0.386 0.295 7e-16
Q01852431 Mitochondrial import inne yes no 0.563 0.464 0.285 6e-15
O02161425 Probable mitochondrial im yes no 0.498 0.416 0.251 8e-11
>sp|Q5XF06|TI442_ARATH Mitochondrial import inner membrane translocase subunit TIM44-2 OS=Arabidopsis thaliana GN=TIM44-2 PE=1 SV=1 Back     alignment and function desciption
 Score =  496 bits (1276), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 237/359 (66%), Positives = 293/359 (81%), Gaps = 12/359 (3%)

Query: 1   MKEKISAATEEVKGTFRTGSTDTSAKHDDDVRDGFKASSGEEKQKQTVSSDTAETFYGKL 60
           +K+K SAATEEVK +F+ G  +++         G   + GE++Q+Q+ S++  +TF+GK 
Sbjct: 119 VKDKFSAATEEVKESFKLGKEESAESA---SSSGTGTTEGEKQQQQSGSTEEQDTFFGKF 175

Query: 61  KSSISSPKFTLAFQKLKEAKVVDLAKKGYDIVKDELSGSPSKRKHLEYTPSPSWTGEKST 120
           KSSISSPK + AF K      +D AKKG DIVKDEL G+PSKRKHLEYTP P +TGE+ST
Sbjct: 176 KSSISSPKLSEAFHK-----PLDFAKKGLDIVKDELRGNPSKRKHLEYTPPPPFTGERST 230

Query: 121 RTDLVVTPSKKSMWSK----LKEKMQGYPVFKRITGISEPVVTKGQEIAEDVRERWETSD 176
           RT++V+ P+K+S W K    L+EKMQGYPVFKR++G+SEPVV K QEIAEDVRE+WETSD
Sbjct: 231 RTEMVIMPTKQSKWQKKWESLREKMQGYPVFKRLSGMSEPVVNKSQEIAEDVREKWETSD 290

Query: 177 NPIVHKIQDMNETIFQETDAAASIKEIRRRDPSFSLPDFVSEVQEAIRPVLSAYMKGDVE 236
           NPIVHKIQDMNE IF+ET +A++ KEIRRRDPSFSLPDFVSE+QEAIRPVL+AY KGD +
Sbjct: 291 NPIVHKIQDMNERIFEETGSASTYKEIRRRDPSFSLPDFVSEIQEAIRPVLNAYSKGDAK 350

Query: 237 TLKKYCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEVEVRETKMMGSSPIIIVAFQTQQ 296
           TLKKYCS E+IERC AEH A+ S G FFD+++LHVSEV+++ETKMMG++P+IIV FQTQ+
Sbjct: 351 TLKKYCSKELIERCTAEHRAFTSQGYFFDHKLLHVSEVDIQETKMMGTTPVIIVRFQTQE 410

Query: 297 IYCVRDKHGTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLYPIWKLREMQQLGVQALI 355
           I+CVRD+ G I EGG+DTI TVYY WAMQQVDA ELGED +YPIW+LREM + GVQALI
Sbjct: 411 IFCVRDQDGKIKEGGQDTIHTVYYDWAMQQVDAAELGEDAIYPIWRLREMLRAGVQALI 469
Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner. Recruits mitochondrial HSP70 to drive protein translocation into the matrix using ATP as an energy source.
Arabidopsis thaliana (taxid: 3702)
>sp|Q1PF33|TI441_ARATH Mitochondrial import inner membrane translocase subunit TIM44-1 OS=Arabidopsis thaliana GN=TIM44-1 PE=2 SV=1 Back     alignment and function description
>sp|O35857|TIM44_MOUSE Mitochondrial import inner membrane translocase subunit TIM44 OS=Mus musculus GN=Timm44 PE=2 SV=2 Back     alignment and function description
>sp|O43615|TIM44_HUMAN Mitochondrial import inner membrane translocase subunit TIM44 OS=Homo sapiens GN=TIMM44 PE=1 SV=2 Back     alignment and function description
>sp|O35094|TIM44_RAT Mitochondrial import inner membrane translocase subunit TIM44 OS=Rattus norvegicus GN=Timm44 PE=2 SV=1 Back     alignment and function description
>sp|O60084|TIM44_SCHPO Mitochondrial import inner membrane translocase subunit tim44 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tim44 PE=3 SV=1 Back     alignment and function description
>sp|Q01852|TIM44_YEAST Mitochondrial import inner membrane translocase subunit TIM44 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TIM44 PE=1 SV=1 Back     alignment and function description
>sp|O02161|TIM44_CAEEL Probable mitochondrial import inner membrane translocase subunit tim-44 OS=Caenorhabditis elegans GN=tim-44 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query355
225438141 485 PREDICTED: mitochondrial import inner me 0.997 0.729 0.735 1e-154
255567254 486 mitochondrial import inner membrane tran 1.0 0.730 0.736 1e-153
297744147 484 unnamed protein product [Vitis vinifera] 0.994 0.729 0.727 1e-150
224062145 484 predicted protein [Populus trichocarpa] 1.0 0.733 0.697 1e-149
224085633 485 predicted protein [Populus trichocarpa] 1.0 0.731 0.682 1e-141
42569661 469 translocase inner membrane subunit 44-2 0.977 0.739 0.660 1e-138
356508140 473 PREDICTED: uncharacterized protein LOC10 0.988 0.742 0.665 1e-135
449526090 484 PREDICTED: uncharacterized protein LOC10 1.0 0.733 0.666 1e-135
297827085 469 attim44-2 [Arabidopsis lyrata subsp. lyr 0.977 0.739 0.657 1e-133
297836804 477 mitochondrial import inner membrane tran 0.991 0.737 0.638 1e-131
>gi|225438141|ref|XP_002278528.1| PREDICTED: mitochondrial import inner membrane translocase subunit tim44-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  550 bits (1416), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 270/367 (73%), Positives = 310/367 (84%), Gaps = 13/367 (3%)

Query: 1   MKEKISAATEEVKGTFRTG------STDTSAKHDDDVRDGFKASSGEEKQKQTVSSDTAE 54
           +KEKISAATE+VK TF  G      S  TSAK + DV  G  +SSGEEK  ++  SDTAE
Sbjct: 120 VKEKISAATEDVKETFGKGKQEFSESAGTSAKSEADVNKG-SSSSGEEKHHKSGPSDTAE 178

Query: 55  TFYGKLKSSIS--SPKFTLAFQKLKEAKVVDLAKKGYDIVKDELSGSPSKRKHLEYTPSP 112
           T +GK KSS+S  SPK +LAF+KLKEAKV+DLAKKGY IVKDELS +PSKRK ++   S 
Sbjct: 179 TLFGKFKSSVSTVSPKVSLAFEKLKEAKVLDLAKKGYGIVKDELSSNPSKRKQMQRAASS 238

Query: 113 SWTGEKSTRTDLVVTPSKKSMWSK----LKEKMQGYPVFKRITGISEPVVTKGQEIAEDV 168
           +  GE+ST+TD+V+ PSK+S WSK    LK+KMQG+PVFKRI+G+SEPVVTKGQE+AEDV
Sbjct: 239 ASPGERSTKTDIVIVPSKQSRWSKKWEALKDKMQGHPVFKRISGLSEPVVTKGQELAEDV 298

Query: 169 RERWETSDNPIVHKIQDMNETIFQETDAAASIKEIRRRDPSFSLPDFVSEVQEAIRPVLS 228
           RERWETSDNP+VHKIQD+NE++F ET AA S KEIRRRDPSFSLPDFVSEVQE IRPVL+
Sbjct: 299 RERWETSDNPVVHKIQDLNESVFGETAAAMSFKEIRRRDPSFSLPDFVSEVQEVIRPVLN 358

Query: 229 AYMKGDVETLKKYCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEVEVRETKMMGSSPII 288
           AY+KGD ETLKKYCSPEVIERCKAEH AYQ+ GI FDN+ILH+S+VEVRETKMMG+SPII
Sbjct: 359 AYIKGDAETLKKYCSPEVIERCKAEHGAYQTMGIIFDNKILHISDVEVRETKMMGTSPII 418

Query: 289 IVAFQTQQIYCVRDKHGTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLYPIWKLREMQQ 348
           IVAFQTQQ+YCVR   G+I EGGKDTI TVYYAWAMQQVDAEELGE  +YPIW+LREMQQ
Sbjct: 419 IVAFQTQQVYCVRSADGSIKEGGKDTIHTVYYAWAMQQVDAEELGEGAIYPIWRLREMQQ 478

Query: 349 LGVQALI 355
           LGVQALI
Sbjct: 479 LGVQALI 485

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255567254|ref|XP_002524608.1| mitochondrial import inner membrane translocase subunit tim44, putative [Ricinus communis] gi|223536161|gb|EEF37816.1| mitochondrial import inner membrane translocase subunit tim44, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297744147|emb|CBI37117.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224062145|ref|XP_002300777.1| predicted protein [Populus trichocarpa] gi|222842503|gb|EEE80050.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224085633|ref|XP_002307643.1| predicted protein [Populus trichocarpa] gi|222857092|gb|EEE94639.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|42569661|ref|NP_181151.3| translocase inner membrane subunit 44-2 [Arabidopsis thaliana] gi|75110963|sp|Q5XF06.1|TI442_ARATH RecName: Full=Mitochondrial import inner membrane translocase subunit TIM44-2; Flags: Precursor gi|53828527|gb|AAU94373.1| At2g36070 [Arabidopsis thaliana] gi|330254108|gb|AEC09202.1| translocase inner membrane subunit 44-2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356508140|ref|XP_003522818.1| PREDICTED: uncharacterized protein LOC100784560 [Glycine max] Back     alignment and taxonomy information
>gi|449526090|ref|XP_004170047.1| PREDICTED: uncharacterized protein LOC101231997 [Cucumis sativus] Back     alignment and taxonomy information
>gi|297827085|ref|XP_002881425.1| attim44-2 [Arabidopsis lyrata subsp. lyrata] gi|297327264|gb|EFH57684.1| attim44-2 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|297836804|ref|XP_002886284.1| mitochondrial import inner membrane translocase subunit TIM44 [Arabidopsis lyrata subsp. lyrata] gi|297332124|gb|EFH62543.1| mitochondrial import inner membrane translocase subunit TIM44 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query355
TAIR|locus:2039195469 TIM44-2 "AT2G36070" [Arabidops 0.977 0.739 0.660 2.9e-126
TAIR|locus:2054759474 TIM44-1 "translocase inner mem 0.985 0.738 0.626 3.3e-118
FB|FBgn0038683459 CG11779 [Drosophila melanogast 0.785 0.607 0.261 6.5e-23
UNIPROTKB|F1NU71447 TIMM44 "Uncharacterized protei 0.901 0.715 0.247 8.6e-19
UNIPROTKB|O43615452 TIMM44 "Mitochondrial import i 0.892 0.701 0.244 1.6e-18
UNIPROTKB|F1PSC7454 TIMM44 "Uncharacterized protei 0.926 0.724 0.240 4.2e-18
MGI|MGI:1343262452 Timm44 "translocase of inner m 0.926 0.727 0.257 7.3e-18
CGD|CAL0005261424 TIM44 [Candida albicans (taxid 0.509 0.426 0.321 7.9e-18
UNIPROTKB|Q5A7M2424 TIM44 "Putative uncharacterize 0.509 0.426 0.321 7.9e-18
UNIPROTKB|E1B844454 TIMM44 "Uncharacterized protei 0.926 0.724 0.235 2.4e-17
TAIR|locus:2039195 TIM44-2 "AT2G36070" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1240 (441.6 bits), Expect = 2.9e-126, P = 2.9e-126
 Identities = 237/359 (66%), Positives = 293/359 (81%)

Query:     1 MKEKISAATEEVKGTFRTGSTDTSAKHDDDVRDGFKASSGEEKQKQTVSSDTAETFYGKL 60
             +K+K SAATEEVK +F+ G  +++         G   + GE++Q+Q+ S++  +TF+GK 
Sbjct:   119 VKDKFSAATEEVKESFKLGKEESAESASSS---GTGTTEGEKQQQQSGSTEEQDTFFGKF 175

Query:    61 KSSISSPKFTLAFQKLKEAKVVDLAKKGYDIVKDELSGSPSKRKHLEYTPSPSWTGEKST 120
             KSSISSPK + AF K      +D AKKG DIVKDEL G+PSKRKHLEYTP P +TGE+ST
Sbjct:   176 KSSISSPKLSEAFHK-----PLDFAKKGLDIVKDELRGNPSKRKHLEYTPPPPFTGERST 230

Query:   121 RTDLVVTPSKKSMWSK----LKEKMQGYPVFKRITGISEPVVTKGQEIAEDVRERWETSD 176
             RT++V+ P+K+S W K    L+EKMQGYPVFKR++G+SEPVV K QEIAEDVRE+WETSD
Sbjct:   231 RTEMVIMPTKQSKWQKKWESLREKMQGYPVFKRLSGMSEPVVNKSQEIAEDVREKWETSD 290

Query:   177 NPIVHKIQDMNETIFQETDAAASIKEIRRRDPSFSLPDFVSEVQEAIRPVLSAYMKGDVE 236
             NPIVHKIQDMNE IF+ET +A++ KEIRRRDPSFSLPDFVSE+QEAIRPVL+AY KGD +
Sbjct:   291 NPIVHKIQDMNERIFEETGSASTYKEIRRRDPSFSLPDFVSEIQEAIRPVLNAYSKGDAK 350

Query:   237 TLKKYCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEVEVRETKMMGSSPIIIVAFQTQQ 296
             TLKKYCS E+IERC AEH A+ S G FFD+++LHVSEV+++ETKMMG++P+IIV FQTQ+
Sbjct:   351 TLKKYCSKELIERCTAEHRAFTSQGYFFDHKLLHVSEVDIQETKMMGTTPVIIVRFQTQE 410

Query:   297 IYCVRDKHGTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLYPIWKLREMQQLGVQALI 355
             I+CVRD+ G I EGG+DTI TVYY WAMQQVDA ELGED +YPIW+LREM + GVQALI
Sbjct:   411 IFCVRDQDGKIKEGGQDTIHTVYYDWAMQQVDAAELGEDAIYPIWRLREMLRAGVQALI 469
GO:0005622 "intracellular" evidence=IEA
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0006886 "intracellular protein transport" evidence=IEA
GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA
GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=TAS
GO:0006626 "protein targeting to mitochondrion" evidence=RCA;TAS
GO:0015462 "protein-transmembrane transporting ATPase activity" evidence=TAS
GO:0005743 "mitochondrial inner membrane" evidence=IDA
TAIR|locus:2054759 TIM44-1 "translocase inner membrane subunit 44-1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0038683 CG11779 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F1NU71 TIMM44 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|O43615 TIMM44 "Mitochondrial import inner membrane translocase subunit TIM44" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1PSC7 TIMM44 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:1343262 Timm44 "translocase of inner mitochondrial membrane 44" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
CGD|CAL0005261 TIM44 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q5A7M2 TIM44 "Putative uncharacterized protein TIM44" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
UNIPROTKB|E1B844 TIMM44 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5XF06TI442_ARATHNo assigned EC number0.66010.97740.7398yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query355
pfam04280146 pfam04280, Tim44, Tim44-like domain 8e-46
smart00978147 smart00978, Tim44, Tim44 is an essential component 5e-36
TIGR00984378 TIGR00984, 3a0801s03tim44, mitochondrial import in 1e-24
COG4395281 COG4395, COG4395, Uncharacterized protein conserve 1e-12
>gnl|CDD|202957 pfam04280, Tim44, Tim44-like domain Back     alignment and domain information 
 Score =  153 bits (388), Expect = 8e-46
 Identities = 45/152 (29%), Positives = 75/152 (49%), Gaps = 6/152 (3%)

Query: 197 AASIKEIRRRDPSFSLPDFVSEVQEAIRPVLSAYMKGDVETLKKYCSPEVIERCKAEHTA 256
           AA+++ I+  DPSF + +F+   +EA   +  A+ +GD+ETL++  +PEV E   A    
Sbjct: 1   AAALRAIKAADPSFDVEEFLEGAREAYEMIQEAWARGDLETLRELLTPEVYEEFAAAIAE 60

Query: 257 YQSHGIFFDNRILHVSEVEVRETKMMGSSPIIIVAFQTQQIYCVRDKHGTITEGGKDTIQ 316
            ++ G+  D+ I+ + + E+ E KM G   ++ V F  Q I    D  G + EG  D   
Sbjct: 61  REAQGLTNDSTIVGIRDAELLEAKMEGDEAVVTVRFVAQLISVTDDASGEVVEGDPDEPV 120

Query: 317 TVYYAWAMQQVDAEELGEDVLYPIWKLREMQQ 348
            V   W  ++            P W+L  +QQ
Sbjct: 121 EVTEVWTFERDLGSP------DPNWRLVGIQQ 146

Tim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane. Tim44 is thought to bind phospholipids of the mitochondrial inner membrane both by electrostatic interactions and by penetrating the polar head group region. This family includes the C-terminal region of Tim44 that has been shown to form a stable proteolytic fragment in yeast. This region is also found in a set of smaller bacterial proteins. The molecular function of the bacterial members of this family is unknown but transport seems likely. The crystal structure of the C terminal of Tim44 has revealed a large hydrophobic pocket which might play an important role in interacting with the acyl chains of lipid molecules in the mitochondrial membrane. Length = 146
>gnl|CDD|214950 smart00978, Tim44, Tim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane Back     alignment and domain information
>gnl|CDD|130057 TIGR00984, 3a0801s03tim44, mitochondrial import inner membrane, translocase subunit Back     alignment and domain information
>gnl|CDD|226830 COG4395, COG4395, Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 355
KOG2580459 consensus Mitochondrial import inner membrane tran 100.0
TIGR00984378 3a0801s03tim44 mitochondrial import inner membrane 100.0
PF04280147 Tim44: Tim44-like domain; InterPro: IPR007379 Tim4 100.0
COG4395281 Uncharacterized protein conserved in bacteria [Fun 99.93
PF07961235 MBA1: MBA1-like protein; InterPro: IPR024621 Mba1 98.46
PF13355117 DUF4101: Protein of unknown function (DUF4101) 96.01
KOG4599379 consensus Putative mitochondrial/chloroplast ribos 94.93
PF12870111 Lumazine_bd: Lumazine-binding domain; InterPro: IP 90.95
KOG2580459 consensus Mitochondrial import inner membrane tran 90.49
PF12893116 Lumazine_bd_2: Putative lumazine-binding; PDB: 3BL 88.74
PF13474121 SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE 87.91
PF08332128 CaMKII_AD: Calcium/calmodulin dependent protein ki 84.76
PF14534107 DUF4440: Domain of unknown function (DUF4440); PDB 81.3
>KOG2580 consensus Mitochondrial import inner membrane translocase, subunit TIM44 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=6.8e-73  Score=557.03  Aligned_cols=324  Identities=31%  Similarity=0.576  Sum_probs=302.9

Q ss_pred             HHhhhhhccCCCCcCCCCCCCccccCCcCCCchhhhhcccCcchhhHHhhhhcccccchhhhHHHHHhhhhHHHHHHhhh
Q 018467            9 TEEVKGTFRTGSTDTSAKHDDDVRDGFKASSGEEKQKQTVSSDTAETFYGKLKSSISSPKFTLAFQKLKEAKVVDLAKKG   88 (355)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   88 (355)
                      ..++||+|++|++|.++|+.++   +.++.-+|.+++++++++.-.+||+||++|.+.|.||+.+..++  +-++.++.|
T Consensus       127 ~~e~~e~~k~~~~ea~eS~~~k---~t~~~~~e~~kqA~~sae~vd~~~~kv~~T~~yk~vSe~~~~vk--k~~d~s~~g  201 (459)
T KOG2580|consen  127 LGELKETVKLGAEEAWESALGK---KTKEAVEEAQKQASGSAEEVDTFFEKVGQTAAYKAVSEVMETVK--KEIDSSRYG  201 (459)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhc---cchhhHHHHHHHhhcchhhhhHhhhhhhhhhhHHHHHHHHHhhc--ccchhhhhh
Confidence            3589999999999999999988   88777788888999999999999999999999999999999998  678999999


Q ss_pred             hhhhhhhhcCCCCcccccCCCCCCCCCCCCCccceeEEecccchhhHH-HHHhhcCCCcccccccccCccccccccchHH
Q 018467           89 YDIVKDELSGSPSKRKHLEYTPSPSWTGEKSTRTDLVVTPSKKSMWSK-LKEKMQGYPVFKRITGISEPVVTKGQEIAED  167 (355)
Q Consensus        89 ~~~vk~e~~~~~~~rk~~~~~~~~~~~~e~~~~t~~~~~~~k~s~w~~-~k~~~~~~p~~~~~~~~~~p~~~k~~~~~~d  167 (355)
                      ..+||+++...++++++..+++++++++|+++. +.+|++|++|+||+ |++|+++|.++++|.               +
T Consensus       202 ~~i~k~~~r~lr~r~~~~~~~~~~~~~~E~n~~-a~~vv~h~~skw~~kwe~fkek~~~~~k~~---------------~  265 (459)
T KOG2580|consen  202 LDIVKERPRKLRKRTEFLGDTFPSEKVGEPNEE-AEGVVLHKDSKWYQKWEDFKEKNVVVRKFQ---------------E  265 (459)
T ss_pred             hhchhhhhhhchhhhhhhccCCCcccccCCCcc-eeeEEeccchHHHHHHHHHHhcccchHHHH---------------H
Confidence            999999999877777777778888899999876 66778899999999 999999999999999               8


Q ss_pred             hhhhhcccccchhhhhhcc-------cccccccChHHHHHHHHHhcCCCCChhhHHHHHHHHHHH-HHHHHHcCCHHHHH
Q 018467          168 VRERWETSDNPIVHKIQDM-------NETIFQETDAAASIKEIRRRDPSFSLPDFVSEVQEAIRP-VLSAYMKGDVETLK  239 (355)
Q Consensus       168 ~r~~~eeSdnP~v~~~~di-------~d~lf~ete~a~al~eIk~~DP~Fd~~~Fl~~ar~~y~p-IleAy~~GDle~Lk  239 (355)
                      |+..||+|+||+|+-+||+       .+++|.+|+.++++++|+++||+||.++||+.|+++|+| ||+||.+||+++||
T Consensus       266 lk~~ydeseN~~i~~~rdvtdki~~~~~g~fsktE~Sev~tei~~iDPsF~~~~Flr~~ee~IiPnVLeAyvkGD~evLK  345 (459)
T KOG2580|consen  266 LKKKYDESENPSIRASRDVTDKITDVDGGLFSKTEMSEVLTEIKKIDPSFDKEDFLRECEEYIIPNVLEAYVKGDLEVLK  345 (459)
T ss_pred             HHhhccccccHHHHHHHHHHHhhhhcccccchhhHHHHHHHHHHhcCCCCCcHHHHHHHHHhhhHHHHHHHHhccHHHHH
Confidence            9999999999999755554       447999999999999999999999999999999999999 99999999999999


Q ss_pred             hhcCHHHHHHHHHHHHHHHhCCCcccceEEEecceeEEEEEEeCCeeEEEEEEEEeEEEEEEcCCCCeecCCCCceeeEE
Q 018467          240 KYCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEVEVRETKMMGSSPIIIVAFQTQQIYCVRDKHGTITEGGKDTIQTVY  319 (355)
Q Consensus       240 ~~cse~~y~~~~a~I~~r~~~G~~~d~kIL~I~~veIv~ak~~~~~pvitVrF~aQqI~~vRDk~GeVVeGd~d~I~~v~  319 (355)
                      +||++++|++|++++++++++|+.+|++||||++|+|.+++||+++|+|+|+|++|+|||+||.+|+|||||||+|++++
T Consensus       346 ~wcsea~~~~~aa~~keykk~gv~~d~kILdI~~Vdia~~KmM~d~PVlIitFqaQeI~~vRd~~GevveGd~d~i~~v~  425 (459)
T KOG2580|consen  346 KWCSEAPFSQLAAPIKEYKKHGVYFDSKILDIRGVDIASGKMMEDGPVLIITFQAQEIMCVRDAKGEVVEGDPDKILRVY  425 (459)
T ss_pred             HHHhhhHHHHHHHHHHHHHhcCeeecceeeeeccchhHHhhhhccCCEEEEEEeeEEEEEEEcCCCceecCCCCceeeEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEEecccccCCCCCCCCeEEeeeeccccccCC
Q 018467          320 YAWAMQQVDAEELGEDVLYPIWKLREMQQLGVQALI  355 (355)
Q Consensus       320 yvW~f~r~~~eel~~~~~~~~WrL~eiqq~g~~a~~  355 (355)
                      |+|+|+| |++||||+. +++|||++|.++|.+++|
T Consensus       426 y~wvl~r-d~~El~~d~-~~~WRLlE~~r~~~~~~~  459 (459)
T KOG2580|consen  426 YAWVLCR-DQDELNPDE-YAAWRLLEFSRAGTEQFL  459 (459)
T ss_pred             eeeeeec-cHhhcCcch-hhhHHHHHHHhccchhcC
Confidence            9999955 999998655 899999999999999876

>TIGR00984 3a0801s03tim44 mitochondrial import inner membrane, translocase subunit Back     alignment and domain information
>PF04280 Tim44: Tim44-like domain; InterPro: IPR007379 Tim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane [] Back     alignment and domain information
>COG4395 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF07961 MBA1: MBA1-like protein; InterPro: IPR024621 Mba1 is an inner membrane protein that is part of the mitochondrial protein export machinery [, ] Back     alignment and domain information
>PF13355 DUF4101: Protein of unknown function (DUF4101) Back     alignment and domain information
>KOG4599 consensus Putative mitochondrial/chloroplast ribosomal protein L45 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF12870 Lumazine_bd: Lumazine-binding domain; InterPro: IPR024267 This entry represents a lumazine-binding domain found in a family of putative lipoproteins from bacteria Back     alignment and domain information
>KOG2580 consensus Mitochondrial import inner membrane translocase, subunit TIM44 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12893 Lumazine_bd_2: Putative lumazine-binding; PDB: 3BLZ_C 3DUK_F 3FKA_C Back     alignment and domain information
>PF13474 SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE7_A 3BB9_E 3CNX_A 3F7S_A 3GWR_B Back     alignment and domain information
>PF08332 CaMKII_AD: Calcium/calmodulin dependent protein kinase II Association; InterPro: IPR013543 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases Back     alignment and domain information
>PF14534 DUF4440: Domain of unknown function (DUF4440); PDB: 3HX8_A 3SOY_A 3ROB_B 3GZR_A 3B7C_A 3CU3_A 3FSD_A 2R4I_C 1TP6_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query355
2cw9_A194 Crystal Structure Of Human Tim44 C-Terminal Domain 5e-17
3qk9_A222 Yeast Tim44 C-Terminal Domain Complexed With Cymal- 8e-16
2fxt_A192 Crystal Structure Of Yeast Tim44 Length = 192 2e-15
>pdb|2CW9|A Chain A, Crystal Structure Of Human Tim44 C-Terminal Domain Length = 194 Back     alignment and structure 
Iteration: 1

 Score = 85.5 bits (210), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 86/169 (50%), Gaps = 5/169 (2%)
Query: 179 IVHKIQDMNETIFQETDAAASIKEIRRRDPSFSLPDFVSEVQEAIRP-VLSAYMKGDVET 237
           +  K+ D+   +F +T+ +  + EI R DP+F    F+ + +  I P VL A + G+++ 
Sbjct: 21  LTDKVTDLLGGLFSKTEXSEVLTEILRVDPAFDKDRFLKQCENDIIPNVLEAXISGELDI 80
Query: 238 LKKYCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEVEVRETKMMGSSPIIIVAFQTQQI 297
           LK +C      +        ++ G+ F +RIL +  V++   K +   P++I+ FQ Q +
Sbjct: 81  LKDWCYEATYSQLAHPIQQAKALGLQFHSRILDIDNVDLAXGKXVEQGPVLIITFQAQLV 140
Query: 298 YCVRDKHGTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLYPIWKLREM 346
             VR+  G + EG  D +    Y WA+ + D +EL     Y  W+L ++
Sbjct: 141 XVVRNPKGEVVEGDPDKVLRXLYVWALCR-DQDELNP---YAAWRLLDI 185
>pdb|3QK9|A Chain A, Yeast Tim44 C-Terminal Domain Complexed With Cymal-3 Length = 222 Back     alignment and structure
>pdb|2FXT|A Chain A, Crystal Structure Of Yeast Tim44 Length = 192 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query355
3qk9_A222 Mitochondrial import inner membrane translocase S 9e-55
2cw9_A194 Translocase of inner mitochondrial membrane; struc 8e-43
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-08
>3qk9_A Mitochondrial import inner membrane translocase S TIM44; mitochondrion, protein transport; 3.10A {Saccharomyces cerevisiae} PDB: 2fxt_A Length = 222 Back     alignment and structure
 Score =  178 bits (452), Expect = 9e-55
 Identities = 57/201 (28%), Positives = 98/201 (48%), Gaps = 9/201 (4%)

Query: 161 GQEIAEDVRERWETSDNPIV---HKIQDMNETIFQETDAAASIKEIRRRDPSFSLPDFVS 217
           G+ I     + W+ S+NP++    KI +     F ET+++    + +  DP+FS   F  
Sbjct: 23  GRSIQSLKNKLWDESENPLIVVMRKITNKVGGFFAETESSRVYSQFKLMDPTFSNESFTR 82

Query: 218 EVQEAIRP-VLSAYMKGDVETLKKYCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEVEV 276
            ++E I P +L AY+KGDV+ LKK+ S        A+   ++   ++ D RIL +  VE+
Sbjct: 83  HLREYIVPEILEAYVKGDVKVLKKWFSEAPFNVYAAQQKIFKEQDVYADGRILDIRGVEI 142

Query: 277 RETKMMG--SSPIIIVAFQTQQIYCVRD-KHGTITEGGKDTIQTVYYAWAMQQVDAEELG 333
              K++     P+++V  + Q+I   R  K G I  G +  I    YA    + D E++ 
Sbjct: 143 VSAKLLAPQDIPVLVVGCRAQEINLYRKKKTGEIAAGDEANILMSSYAMVFTR-DPEQID 201

Query: 334 EDVLYPIWKLREMQQLGVQAL 354
           +D     WK+ E  + G +  
Sbjct: 202 DD-ETEGWKILEFVRGGSRQF 221
>2cw9_A Translocase of inner mitochondrial membrane; structure genomics, TIM, structural genomics, NPPFSA, riken structural genomics/proteomics initiative; HET: 1PE; 1.90A {Homo sapiens} SCOP: d.17.4.13 Length = 194 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query355
3qk9_A222 Mitochondrial import inner membrane translocase S 100.0
2cw9_A194 Translocase of inner mitochondrial membrane; struc 100.0
4hyz_A114 Uncharacterized protein; PF13026 family protein, D 90.88
3gzr_A146 Uncharacterized protein with A NTF2-like fold; str 88.5
3soy_A145 NTF2-like superfamily protein; structural genomics 87.27
3f7s_A142 Uncharacterized NTF2-like protein; structural geno 86.5
2f86_B143 Hypothetical protein K11E8.1D; UNC-43, oligomeriza 86.25
2ux0_A143 Calcium-calmodulin dependent protein kinase (CAM I 86.17
3h51_A156 Putative calcium/calmodulin dependent protein KIN 86.14
3gwr_A144 Putative calcium/calmodulin-dependent protein KIN 85.2
4i4k_A143 Uncharacterized protein SGCJ; structural genomics, 84.51
3fsd_A134 NTF2-like protein of unknown function in nutrient; 84.44
3bb9_A148 Putative orphan protein; structural genomics, join 81.84
2r4i_A123 Uncharacterized protein; NTF2-like protein, struct 80.28
>3qk9_A Mitochondrial import inner membrane translocase S TIM44; mitochondrion, protein transport; 3.10A {Saccharomyces cerevisiae} PDB: 2fxt_A Back     alignment and structure
Probab=100.00  E-value=3.2e-58  Score=427.78  Aligned_cols=206  Identities=27%  Similarity=0.527  Sum_probs=162.2

Q ss_pred             hhhHH-HHHhhcCCCcccccccccCccccccccchHHhhhh-hcccccchhhhhhccccc---ccccChHHHHHHHHHhc
Q 018467          132 SMWSK-LKEKMQGYPVFKRITGISEPVVTKGQEIAEDVRER-WETSDNPIVHKIQDMNET---IFQETDAAASIKEIRRR  206 (355)
Q Consensus       132 s~w~~-~k~~~~~~p~~~~~~~~~~p~~~k~~~~~~d~r~~-~eeSdnP~v~~~~di~d~---lf~ete~a~al~eIk~~  206 (355)
                      .+|++ |++|+++||++++|+               |+|++ |||||||+|+++|+|+|+   ||++|+++++|++|+++
T Consensus         7 ~~~~~~w~~fk~~~~~~~~~~---------------~~k~~~~~es~np~i~~~r~itd~v~~~f~~te~a~~l~~Ik~~   71 (222)
T 3qk9_A            7 ESFGKKVEDFKEKTVVGRSIQ---------------SLKNKLWDESENPLIVVMRKITNKVGGFFAETESSRVYSQFKLM   71 (222)
T ss_dssp             --------------------C---------------HHHHHHHHHCCCHHHHHHHHHCC---------CCHHHHTTCC--
T ss_pred             hHHHHHHHHHhhcCHHHHHHH---------------HHHhhhcccccCHHHHHHHHHHHhcccccCCCHHHHHHHHHHHh
Confidence            38888 999999999999999               99999 999999999999999984   89999999999999999


Q ss_pred             CCCCChhhHHHHHHHHHHH-HHHHHHcCCHHHHHhhcCHHHHHHHHHHHHHHHhCCCcccceEEEecceeEEEEEEeC--
Q 018467          207 DPSFSLPDFVSEVQEAIRP-VLSAYMKGDVETLKKYCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEVEVRETKMMG--  283 (355)
Q Consensus       207 DP~Fd~~~Fl~~ar~~y~p-IleAy~~GDle~Lk~~cse~~y~~~~a~I~~r~~~G~~~d~kIL~I~~veIv~ak~~~--  283 (355)
                      ||+|++++|+++|+++|.| ||+||.+||++.||+||++++|+.|+++|++|+++|+++++++|+|++++|++|++++  
T Consensus        72 DPsF~~~~Fl~~a~~ai~p~Il~Af~~GD~~~Lk~llse~~y~~f~~~i~~r~~~G~~~d~~il~I~~vdI~~a~~~~~~  151 (222)
T 3qk9_A           72 DPTFSNESFTRHLREYIVPEILEAYVKGDVKVLKKWFSEAPFNVYAAQQKIFKEQDVYADGRILDIRGVEIVSAKLLAPQ  151 (222)
T ss_dssp             ---CCHHHHHHHHHHTHHHHHHHHHHHTCHHHHHHHBCHHHHHHHHHHHHHHHTTTEEECCEEEEEEEEEEEEEEECSSS
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHhhcCHHHHHHHHHHHHHHHHCCCEeeeeEeeecceEEEEEEEecCC
Confidence            9999999999999999886 9999999999999999999999999999999999999999999999999999999995  


Q ss_pred             CeeEEEEEEEEeEEEEEEc-CCCCeecCCCCceeeEEEEEEEEEecccccCCCCCCCCeEEeeeeccccccC
Q 018467          284 SSPIIIVAFQTQQIYCVRD-KHGTITEGGKDTIQTVYYAWAMQQVDAEELGEDVLYPIWKLREMQQLGVQAL  354 (355)
Q Consensus       284 ~~pvitVrF~aQqI~~vRD-k~GeVVeGd~d~I~~v~yvW~f~r~~~eel~~~~~~~~WrL~eiqq~g~~a~  354 (355)
                      +.|+|+|+|++|||+|+|| ++|+||+|+|++|.++.|+|+|+| ++++++ +..+|+|+|++|||.|+.+.
T Consensus       152 ~~p~itV~f~aq~i~~~rd~k~GeVVeGd~d~i~~~~~~WtF~R-~~~~~d-~~~tp~WkL~eiq~~~~~~~  221 (222)
T 3qk9_A          152 DIPVLVVGCRAQEINLYRKKKTGEIAAGDEANILMSSYAMVFTR-DPEQID-DDETEGWKILEFVRGGSRQF  221 (222)
T ss_dssp             CCEEEEEEEEEEEECCEEESTTCCCSSSCTTCCEEEEEEEEEEE-CCC---------CEEEEEEECCCCSCC
T ss_pred             CceEEEEEEEEEEEEEEEeCCCCccccCCCCCceEEEEEEEEEE-cCccCC-CCCCCCcEEehhhccccccc
Confidence            7999999999999999999 999999999999999999999976 555543 23348999999999998654
>2cw9_A Translocase of inner mitochondrial membrane; structure genomics, TIM, structural genomics, NPPFSA, riken structural genomics/proteomics initiative; HET: 1PE; 1.90A {Homo sapiens} SCOP: d.17.4.13 Back     alignment and structure
>4hyz_A Uncharacterized protein; PF13026 family protein, DUF3887, structural genomics, joint for structural genomics, JCSG; 2.25A {Ruminococcus gnavus} Back     alignment and structure
>3gzr_A Uncharacterized protein with A NTF2-like fold; structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: MSE GOL; 1.40A {Caulobacter vibrioides} Back     alignment and structure
>3soy_A NTF2-like superfamily protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Salmonella enterica subsp} Back     alignment and structure
>3f7s_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; 2.11A {Pseudomonas putida KT2440} Back     alignment and structure
>2f86_B Hypothetical protein K11E8.1D; UNC-43, oligomerization domain, transferase; 2.64A {Caenorhabditis elegans} SCOP: d.17.4.7 Back     alignment and structure
>2ux0_A Calcium-calmodulin dependent protein kinase (CAM II gamma; transferase, oligomerisation DOM serine- threonine kinase, ATP-binding; 2.46A {Homo sapiens} SCOP: d.17.4.7 PDB: 2w2c_A 1hkx_A* Back     alignment and structure
>3h51_A Putative calcium/calmodulin dependent protein KIN association domain; NP_636218.1; HET: MSE PG4; 1.70A {Xanthomonas campestris PV} Back     alignment and structure
>3gwr_A Putative calcium/calmodulin-dependent protein KIN II association domain; YP_315894.1; HET: MSE PG4; 2.01A {Thiobacillus denitrificans atcc 25259} Back     alignment and structure
>4i4k_A Uncharacterized protein SGCJ; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: CIT PG4 1PE; 1.70A {Streptomyces globisporus} Back     alignment and structure
>3fsd_A NTF2-like protein of unknown function in nutrient; YP_427473.1, NTF2-like protein of unknown function in nutrie uptake; HET: UNL; 1.70A {Rhodospirillum rubrum atcc 11170} SCOP: d.17.4.0 Back     alignment and structure
>3bb9_A Putative orphan protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.80A {Shewanella frigidimarina} SCOP: d.17.4.16 Back     alignment and structure
>2r4i_A Uncharacterized protein; NTF2-like protein, structural genomics, joint center for STR genomics, JCSG; HET: MSE CIT; 1.60A {Cytophaga hutchinsonii atcc 33406} SCOP: d.17.4.15 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 355
d2fxta1192 d.17.4.13 (A:234-425) Translocase of inner mitocho 6e-50
d2cw9a1182 d.17.4.13 (A:270-451) Translocase of inner mitocho 2e-42
>d2fxta1 d.17.4.13 (A:234-425) Translocase of inner mitochondrial membrane TIMM44 (TIM44), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 192 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: TIM44-like
domain: Translocase of inner mitochondrial membrane TIMM44 (TIM44), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  163 bits (414), Expect = 6e-50
 Identities = 54/189 (28%), Positives = 95/189 (50%), Gaps = 10/189 (5%)

Query: 166 EDVRER-WETSDNPIV---HKIQDMNETIFQETDAAASIKEIRRRDPSFSLPDFVSEVQE 221
           + ++ + W+ S+NP++    KI +     F ET+++    + +  DP+FS   F   ++E
Sbjct: 3   QSLKNKLWDESENPLIVVMRKITNKVGGFFAETESSRVYSQFKLMDPTFSNESFTRHLRE 62

Query: 222 AIRP-VLSAYMKGDVETLKKYCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEVEVRETK 280
            I P +L AY+KGDV+ LKK+ S        A+   ++   ++ D RIL +  VE+   K
Sbjct: 63  YIVPEILEAYVKGDVKVLKKWFSEAPFNVYAAQQKIFKEQDVYADGRILDIRGVEIVSAK 122

Query: 281 MMG--SSPIIIVAFQTQQIYCVRD-KHGTITEGGKDTIQTVYYAWAMQQVDAEELGEDVL 337
           ++     P+++V  + Q+I   R  K G I  G +  I    YA    + D E++ +D  
Sbjct: 123 LLAPQDIPVLVVGCRAQEINLYRKKKTGEIAAGDEANILMSSYAMVFTR-DPEQIDDDE- 180

Query: 338 YPIWKLREM 346
              WK+ E 
Sbjct: 181 TEGWKILEF 189
>d2cw9a1 d.17.4.13 (A:270-451) Translocase of inner mitochondrial membrane TIMM44 (TIM44), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 182 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query355
d2fxta1192 Translocase of inner mitochondrial membrane TIMM44 100.0
d2cw9a1182 Translocase of inner mitochondrial membrane TIMM44 100.0
d2ux0a1135 Association domain of calcium/calmodulin-dependent 93.44
d3cnxa1153 Uncharacterized protein SAV4671 {Streptomyces aver 92.99
d2r4ia1122 Uncharacterized protein CHU142 {Cytophaga hutchins 92.51
d2rcda1127 Uncharacterized protein ECA3500 {Pectobacterium at 91.39
d3bb9a1121 Uncharacterized protein Sfri1973 {Shewanella frigi 89.91
d3cu3a1162 Uncharacterized protein NpunR1993 {Nostoc punctifo 88.24
d2f86b1129 Association domain of calcium/calmodulin-dependent 82.16
d3b7ca1121 Uncharacterized protein SO0125 {Shewanella oneiden 81.03
d2owpa1128 Hypothetical protein BxeB1374 {Burkholderia xenovo 80.85
>d2fxta1 d.17.4.13 (A:234-425) Translocase of inner mitochondrial membrane TIMM44 (TIM44), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: TIM44-like
domain: Translocase of inner mitochondrial membrane TIMM44 (TIM44), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.7e-49  Score=356.07  Aligned_cols=181  Identities=28%  Similarity=0.569  Sum_probs=167.3

Q ss_pred             HHhhhh-hcccccchhhhhhcccc---cccccChHHHHHHHHHhcCCCCChhhHHHHHHHHHHH-HHHHHHcCCHHHHHh
Q 018467          166 EDVRER-WETSDNPIVHKIQDMNE---TIFQETDAAASIKEIRRRDPSFSLPDFVSEVQEAIRP-VLSAYMKGDVETLKK  240 (355)
Q Consensus       166 ~d~r~~-~eeSdnP~v~~~~di~d---~lf~ete~a~al~eIk~~DP~Fd~~~Fl~~ar~~y~p-IleAy~~GDle~Lk~  240 (355)
                      ++||++ |||||||+|+..|+|+|   ++|++|+++++|++||++||+||+.+|+.+|+.+|+| ||+||++||++.||+
T Consensus         3 ~~~~~~~~~~sdnp~v~~~r~i~d~~~~~f~ete~~~~l~~ik~~Dp~F~~~~Fl~gak~~~~p~Il~Af~~GD~~~Lk~   82 (192)
T d2fxta1           3 QSLKNKLWDESENPLIVVMRKITNKVGGFFAETESSRVYSQFKLMDPTFSNESFTRHLREYIVPEILEAYVKGDVKVLKK   82 (192)
T ss_dssp             HHHHHHHHTCCSSHHHHHHHHHHTTTTCCBCCCCSHHHHHHHHHHCTTCCHHHHHHHHHHTHHHHHHHHHHTTCHHHHHH
T ss_pred             hHhcccccccCCCcceeeeeeeccccccccccCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            389998 99999999988888776   6999999999999999999999999999999999985 999999999999999


Q ss_pred             hcCHHHHHHHHHHHHHHHhCCCcccceEEEecceeEEEEEEe--CCeeEEEEEEEEeEEEEEEc-CCCCeecCCCCceee
Q 018467          241 YCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEVEVRETKMM--GSSPIIIVAFQTQQIYCVRD-KHGTITEGGKDTIQT  317 (355)
Q Consensus       241 ~cse~~y~~~~a~I~~r~~~G~~~d~kIL~I~~veIv~ak~~--~~~pvitVrF~aQqI~~vRD-k~GeVVeGd~d~I~~  317 (355)
                      ||++++|+.|+++|++|+++|+++++++|+|++++|++++++  ++.|+|+|+|++|||+|+|| ++|+||+|+++.+..
T Consensus        83 lls~~vy~~f~~~I~~r~~~g~~~~~~ii~I~~~~I~~a~~~~~~~~~~itV~F~t~qi~~~~d~k~G~IieGd~d~i~~  162 (192)
T d2fxta1          83 WFSEAPFNVYAAQQKIFKEQDVYADGRILDIRGVEIVSAKLLAPQDIPVLVVGCRAQEINLYRKKKTGEIAAGDEANILM  162 (192)
T ss_dssp             HBCHHHHHHHHHHHHHHHHTTEECCEEECCCEEEEEEEEEEETTTTEEEEEEEEEECEEECCEETTTBTTSSCSCCCCCC
T ss_pred             HhhHHHHHHHHHHHHHHHHcCCeeeEEEeccceeEEEEEEEecCCCeEEEEEEEEEEEEEEEEecCCCcEecCCCCccEE
Confidence            999999999999999999999999999999999999999997  46899999999999999998 689999999999999


Q ss_pred             EEEEEEEEEecccccCCCCCCCCeEEeeeec
Q 018467          318 VYYAWAMQQVDAEELGEDVLYPIWKLREMQQ  348 (355)
Q Consensus       318 v~yvW~f~r~~~eel~~~~~~~~WrL~eiqq  348 (355)
                      +.|+|+|+| +..+.+| .++++|+|+||+|
T Consensus       163 v~d~WtF~R-~~~~~~p-n~~~~W~LiE~~~  191 (192)
T d2fxta1         163 SSYAMVFTR-DPEQIDD-DETEGWKILEFVR  191 (192)
T ss_dssp             EEEEEEEEC-CSSSCTT-SSSTTCEEEEEEC
T ss_pred             EEEEEEEEE-cCccCCC-CCCCCEEEEEeec
Confidence            999999987 4444433 2356799999987
>d2cw9a1 d.17.4.13 (A:270-451) Translocase of inner mitochondrial membrane TIMM44 (TIM44), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ux0a1 d.17.4.7 (A:387-521) Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3cnxa1 d.17.4.17 (A:5-157) Uncharacterized protein SAV4671 {Streptomyces avermitilis [TaxId: 33903]} Back     information, alignment and structure
>d2r4ia1 d.17.4.15 (A:1-122) Uncharacterized protein CHU142 {Cytophaga hutchinsonii [TaxId: 985]} Back     information, alignment and structure
>d2rcda1 d.17.4.18 (A:1-127) Uncharacterized protein ECA3500 {Pectobacterium atrosepticum [TaxId: 29471]} Back     information, alignment and structure
>d3bb9a1 d.17.4.16 (A:27-147) Uncharacterized protein Sfri1973 {Shewanella frigidimarina [TaxId: 56812]} Back     information, alignment and structure
>d3cu3a1 d.17.4.28 (A:9-170) Uncharacterized protein NpunR1993 {Nostoc punctiforme [TaxId: 272131]} Back     information, alignment and structure
>d2f86b1 d.17.4.7 (B:343-471) Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
>d3b7ca1 d.17.4.16 (A:1-121) Uncharacterized protein SO0125 {Shewanella oneidensis [TaxId: 70863]} Back     information, alignment and structure
>d2owpa1 d.17.4.18 (A:1-128) Hypothetical protein BxeB1374 {Burkholderia xenovorans [TaxId: 36873]} Back     information, alignment and structure