Citrus Sinensis ID: 018474

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-----
Protein Sequence
MAPKSFLLACLLAFTVQIFFSLSVSSLASLLSISKESSSMKGLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEEGVEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLDGPEPQLATI
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHcEEcccccccccccccccccccccccccEEcccccccccEEEEEcccccEEEEEcccEEEEEEccccEEEEEEEccccccccEEEcccccEEEEEccccEEEEEccccEEEEEcccccccEEEcccccEEEEEcccccccccccccccccccccEEEEEcccccEEEEEEcccccccEEEEcccccEEEEEEccccEEEEEEEccccccccEEEEEccccccccEEEcccccEEEEEEcccccHHHHHHccHHHHHHHHHccccEEEcccccccccEEEEEEEcccccEEEEEEcccccccccEEEEEEEccEEEEEEccccEEEEEEccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHEEHHHHHHHHccccccccccccccccccccccHHHHHHHHHccccccccccEEEcccccEEEEEccccEEEEEEcccccEEEEEEEccccccEEEEcccccEEEEEccccEEEEcccccEEEEccEEEccccEEccccEEEEEcccccccHHHHHHHHHccccccEEEEEcccccEEEEEEcccEccccEEEcccccEEEEEEccHHHEEEEEEcccccccEHHHHHccccccccccccccccEEEEEEccccHHHHHHcccHHHHHHHHHccHHHcccccccccccEEEEEEccccccEEEEEEcccccEEEEEEEEEEEccEEEEEEccccEEEEEEccccccccccc
Coil and Loop (DISEMBL)
MAPKSFLLACLLAFTVQIFFSLSVSSLASLLSISKesssmkgltklgegcvnhpedvsVVVSKGALYTATRDGWVKYFILHNETlvnwkhidsqsllgltttkdggvilcdnekgllKVTEEGveaivpdasftndviaasdGTLYFTVAstkytptdfykdmaegkpygqlrkydpklkettvlhegfyfangialskneDFVVVCESWKFRCRRYWLKGDRAGILDAFIenlpggpdninlapdgsfWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLlpmgsdagarvvkvdgndgkiirdfndpdatYISFVTSAAEFDGNLYLASLQsnfigilpldgpepqlati
Flexible Loop (DISEMBL)
MAPKSFLLACLLAFTVQIFFSLSVSSLASLLSISKESSSMKGLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEEGVEAIVPDASFTNDVIAASDGTLYFTVAStkytptdfykdmaegkpygqlrkyDPKLKETTVLHEGFYFANgialskneDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLDGPEPQLATI
Low Complexity Region (SEG)
MAPKSFLLACLLAFTVQIFFslsvsslasllsiskesssMKGLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEEGVEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLDGPEPQLATI
Disordered region (IsUnstruct)
*****FLLACLLAFTVQIFFSLSVSSLASLLSI*********LTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEEGVEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPL**********
Disordered Region (DISOPRED)
**PKSFLLACLLAFTVQIFFSLSVSSLASLLSISKESSSMKGLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEEGVEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLDGPEP**A**
Disordered Region (DISEMBL)
MAPKSFLLACLLAFTVQIFFSLSVSSLASLLSISKESSSMKGLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEEGVEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLDGPEPQLATI
Disordered Region (DISPRO)
*APKSFLLACLLAFTVQIFFSLSVSSLASLLSISKESSSMKGLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEEGVEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLDGP*******
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAPKSFLLACLLAFTVQIFFSLSVSSLASLLSISKESSSMKGLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEEGVEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLDGPEPQLATI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	355	2.2.26 [Sep-21-2011]
Q7TP48	376	Adipocyte plasma membrane	yes	no	0.895	0.845	0.306	9e-29
Q3T0E5	412	Adipocyte plasma membrane	yes	no	0.892	0.769	0.290	1e-27
Q9HDC9	416	Adipocyte plasma membrane	yes	no	0.892	0.762	0.293	2e-27
Q9D7N9	415	Adipocyte plasma membrane	yes	no	0.870	0.744	0.293	2e-27
Q5ZIF1	415	Adipocyte plasma membrane	yes	no	0.569	0.486	0.371	2e-27
B5X3B2	416	Adipocyte plasma membrane	N/A	no	0.701	0.598	0.310	3e-24
Q803F5	415	Adipocyte plasma membrane	yes	no	0.681	0.583	0.298	2e-23
P94111	335	Strictosidine synthase 1	no	no	0.487	0.516	0.297	1e-16
P92976	329	Strictosidine synthase 3	no	no	0.484	0.522	0.308	1e-15
P68175	344	Strictosidine synthase OS	N/A	no	0.301	0.311	0.348	2e-10

>sp|Q7TP48|APMAP_RAT Adipocyte plasma membrane-associated protein OS=Rattus norvegicus GN=Apmap PE=2 SV=2

 Score =  127 bits (320), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 108/352 (30%), Positives = 161/352 (45%), Gaps = 34/352 (9%)

Query: 21  SLSVSSLASLLSISKESSSMKGLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFIL 80
           S S      +  + + ++ ++   +L E  +N PE  S+V     L+T T DG V    L
Sbjct: 29  SFSFKEPPFMFGVLQPNTKLRQAERLFENQLNGPE--SIVNIGDVLFTGTADGRV--VKL 84

Query: 81  HN---ETLVNW-----KHIDSQSL----LGLTTTKDGGVILCDNEKGLLKV--------- 119
            N   ET+  +     K  D +      LG+    +G + + D  KGL +V         
Sbjct: 85  ENGEIETIARFGSGPCKTRDDEPTCGRPLGIRVGPNGTLFVVDAYKGLFEVNPQKRSVKL 144

Query: 120 ---TEEGVEAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKY 175
              +E  +E      SF ND+    DG  +YFT +S+K+   D+   + EG   G+L +Y
Sbjct: 145 LLSSETPIEG--KKMSFVNDLTITRDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEY 202

Query: 176 DPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLP 235
           D   KE  VL +   F NG+ LS  EDFV+V E+   R RR ++ G   G  D F+EN+P
Sbjct: 203 DTVTKEVKVLLDQLQFPNGVQLSPEEDFVLVAETAMARIRRVYVSGLMKGGADMFVENMP 262

Query: 236 GGPDNINLAPDGSFWI--GLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGA 293
           G PDNI  +  G +W+    I+ N  G   +    +K  +      L S    M      
Sbjct: 263 GFPDNIRPSSSGGYWVAAATIRAN-PGFSMLDFLSDKPFIKRMIFKLFSQETVMKFVPRY 321

Query: 294 RVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPL 345
            +V    + G   R  +DPD   +++V+ A E DG LYL S +S FI  L L
Sbjct: 322 SLVLEVSDSGAFRRSLHDPDGQVVTYVSEAHEHDGYLYLGSFRSPFICRLSL 373

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation.
Rattus norvegicus (taxid: 10116)

>sp|Q3T0E5|APMAP_BOVIN Adipocyte plasma membrane-associated protein OS=Bos taurus GN=APMAP PE=2 SV=1

 Score =  124 bits (310), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 102/351 (29%), Positives = 163/351 (46%), Gaps = 34/351 (9%)

Query: 22  LSVSSLASLLSISKESSSMKGLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILH 81
           LS       L + + ++ ++   +L E  +  PE ++ +     ++T T DG V    L 
Sbjct: 69  LSFKEPPLFLGVLQPNTKLQQAERLFENQLVGPESIANI--GDVMFTGTADGRV--VKLE 124

Query: 82  N---ETLVNW-----KHIDSQSL----LGLTTTKDGGVILCDNEKGLLKV---------- 119
           N   ET+  +     K  D +      LG+    +G + + D  KGL +V          
Sbjct: 125 NGEVETIARFGSGPCKTRDDEPACGRPLGIRAGPNGTLFVVDAYKGLFEVNPWKREVKLL 184

Query: 120 --TEEGVEAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYD 176
             +E  +E      SF ND+    DG  +YFT +S+K+   D+   + EG   G+L +YD
Sbjct: 185 LSSETPIEGR--KMSFLNDLTVTRDGRKIYFTDSSSKWQRRDYLLLLMEGTDDGRLLEYD 242

Query: 177 PKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPG 236
            + KE  VL +   F NG+ LS  EDFV+V E    R RR+++ G   G  D F+ENLPG
Sbjct: 243 TQTKEVKVLLDHLRFPNGVQLSPAEDFVLVVELAMVRIRRFYVSGLMKGGADVFVENLPG 302

Query: 237 GPDNINLAPDGSFWIGL--IKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGAR 294
            PDNI  +  G +W+ +  I+ N  G   +    E+  L      L S    M       
Sbjct: 303 FPDNIRASSSGGYWVSMAAIRAN-PGFSMLDFLSERPFLKKVIFKLFSQETVMKFVPRYS 361

Query: 295 VVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPL 345
           +V    + G  +R  +DP+   +++V+ A E  G+LYL S ++ ++  L L
Sbjct: 362 LVLELSDSGTFLRSLHDPEGQVVTYVSEAHEHSGHLYLGSFRAPYLCRLRL 412

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation.

Bos taurus (taxid: 9913)

>sp|Q9HDC9|APMAP_HUMAN Adipocyte plasma membrane-associated protein OS=Homo sapiens GN=APMAP PE=1 SV=2

 Score =  124 bits (310), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 103/351 (29%), Positives = 163/351 (46%), Gaps = 34/351 (9%)

Query: 22  LSVSSLASLLSISKESSSMKGLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILH 81
           LS      LL +   ++ ++   +L E  +  PE ++ +     ++T T DG V    L 
Sbjct: 70  LSFKEPPLLLGVLHPNTKLRQAERLFENQLVGPESIAHI--GDVMFTGTADGRV--VKLE 125

Query: 82  N---ETLVNW-----KHIDSQSL----LGLTTTKDGGVILCDNEKGLLKV---------- 119
           N   ET+  +     K  D + +    LG+    +G + + D  KGL +V          
Sbjct: 126 NGEIETIARFGSGPCKTRDDEPVCGRPLGIRAGPNGTLFVADAYKGLFEVNPWKREVKLL 185

Query: 120 --TEEGVEAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYD 176
             +E  +E    + SF ND+    DG  +YFT +S+K+   D+   + EG   G+L +YD
Sbjct: 186 LSSETPIEG--KNMSFVNDLTVTQDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYD 243

Query: 177 PKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPG 236
              +E  VL +   F NG+ LS  EDFV+V E+   R RR ++ G   G  D F+EN+PG
Sbjct: 244 TVTREVKVLLDQLRFPNGVQLSPAEDFVLVAETTMARIRRVYVSGLMKGGADLFVENMPG 303

Query: 237 GPDNINLAPDGSFWIGL--IKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGAR 294
            PDNI  +  G +W+G+  I+ N  G   +    E+  +      L S    M       
Sbjct: 304 FPDNIRPSSSGGYWVGMSTIRPN-PGFSMLDFLSERPWIKRMIFKLFSQETVMKFVPRYS 362

Query: 295 VVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPL 345
           +V    + G   R  +DPD    ++++   E DG+LYL S +S F+  L L
Sbjct: 363 LVLELSDSGAFRRSLHDPDGLVATYISEVHEHDGHLYLGSFRSPFLCRLSL 413

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation.

Homo sapiens (taxid: 9606)

>sp|Q9D7N9|APMAP_MOUSE Adipocyte plasma membrane-associated protein OS=Mus musculus GN=Apmap PE=1 SV=1

 Score =  123 bits (309), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 106/361 (29%), Positives = 163/361 (45%), Gaps = 52/361 (14%)

Query: 21  SLSVSSLASLLSISKESSSMKGLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFIL 80
           S S      +  +   ++ ++   +L E  ++ PE  S+V     L+T T DG V    L
Sbjct: 68  SFSFKEPPFMFGVLHPNTKLRQAERLFENQLSGPE--SIVNIGDVLFTGTADGRV--VKL 123

Query: 81  HN---ETLVNW-----KHIDSQSL----LGLTTTKDGGVILCDNEKGLLKV--------- 119
            N   ET+  +     K  D +      LG+    +G + + D  KGL +V         
Sbjct: 124 ENGEIETIARFGSGPCKTRDDEPTCGRPLGIRAGPNGTLFVVDAYKGLFEVNPQKRSVKL 183

Query: 120 ---TEEGVEAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKY 175
              +E  +E      SF ND+    DG  +YFT +S+K+   D+   + E    G+L +Y
Sbjct: 184 LLSSETPIEG--KKMSFVNDLTVTRDGRKIYFTDSSSKWQRRDYLLLVMEATDDGRLLEY 241

Query: 176 DPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLP 235
           D   KE  VL +   F NG+ LS  EDFV+V E+   R RR ++ G   G  D F+EN+P
Sbjct: 242 DTVTKEVKVLLDQLQFPNGVQLSPEEDFVLVAETTMARIRRVYVSGLMKGGADMFVENMP 301

Query: 236 GGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAY---PGLISLLLPMGSDAG 292
           G PDNI  +  G +W+           A  +    + +LD     P +  ++  M S   
Sbjct: 302 GFPDNIRPSSSGGYWVAA---------ATIRANPGFSMLDFLSDKPFIKRMIFKMFSQET 352

Query: 293 --------ARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILP 344
                   + V++V  + G   R  +DPD   +++V+ A E DG LYL S +S FI  L 
Sbjct: 353 VMKFVPRYSLVLEV-SDSGAFRRSLHDPDGQVVTYVSEAHEHDGYLYLGSFRSPFICRLS 411

Query: 345 L 345
           L
Sbjct: 412 L 412

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate (By similarity). May play a role in adipocyte differentiation.

Mus musculus (taxid: 10090)

>sp|Q5ZIF1|APMAP_CHICK Adipocyte plasma membrane-associated protein OS=Gallus gallus GN=APMAP PE=2 SV=1

 Score =  123 bits (308), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/218 (37%), Positives = 114/218 (52%), Gaps = 16/218 (7%)

Query: 132 SFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFY 190
           SF ND+    DG  +YFT +S+K+   DF   + EG   G+L +YD   KE  VL  G  
Sbjct: 197 SFLNDLTVTQDGRKIYFTDSSSKWQRRDFLFLVMEGTDDGRLLEYDTVTKEVKVLMVGLR 256

Query: 191 FANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFW 250
           F NG+ LS  EDFV+V E+   R RRY++ G   G  D F+EN+PG PDNI L+  G +W
Sbjct: 257 FPNGVQLSPAEDFVLVLETAMARIRRYYVSGLMKGGADMFVENMPGLPDNIRLSSSGGYW 316

Query: 251 IGL-IKMNQTGVRAIQKCREK-------WELLDAYPGLISLLLPMGSDAGARVVKVDGND 302
           + + +     G   +    EK       ++LL      ++ LLP  S     VV++    
Sbjct: 317 VAMPVVRPNPGFSMLDFLSEKPWIKRMIFKLLSQE--TVTKLLPKRS----LVVELS-ET 369

Query: 303 GKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFI 340
           G   R F+DP    + +V+ A E +G LYL S +S FI
Sbjct: 370 GSYRRSFHDPTGLTVPYVSEAHEHNGYLYLGSFRSPFI 407

Gallus gallus (taxid: 9031)

>sp|B5X3B2|APMAP_SALSA Adipocyte plasma membrane-associated protein OS=Salmo salar GN=apmap PE=2 SV=1

 Score =  113 bits (282), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/261 (31%), Positives = 125/261 (47%), Gaps = 12/261 (4%)

Query: 97  LGLTTTKDGGVILCDNEKGLLKV---TEEGVEAIVPDA-------SFTNDVIAASDGT-L 145
           LG+    +G + + D   GL KV   T E    +           SF ND+    DG  +
Sbjct: 153 LGIRVGPNGTLFVADAYLGLFKVNPVTGEVTNLVSAGQMVGGRRLSFVNDLDVTQDGRKV 212

Query: 146 YFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVV 205
           YFT +S+++   D+   + E    G++ +YD + KE TVL E   FANGI L  +E+ V+
Sbjct: 213 YFTDSSSRWQRRDYLHLIMEATADGRVLEYDTETKEVTVLMENLRFANGIQLFPDEESVL 272

Query: 206 VCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMN-QTGVRAI 264
           V E+   R RR  + G   G +D F++NLPG PDNI  +  G +W+ +  +    G   +
Sbjct: 273 VAETTMARIRRVHVSGLNKGGMDTFVDNLPGFPDNIRRSSSGGYWVAMSAVRPNPGFSML 332

Query: 265 QKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAA 324
               +K  +      L S  + M       +V      G  +R F+DP     ++V+ A 
Sbjct: 333 DFLSQKPWIKKLIFKLFSQDVLMKFVPRYSLVIELQESGACMRSFHDPHGMVAAYVSEAH 392

Query: 325 EFDGNLYLASLQSNFIGILPL 345
           E DG+LYL S +S ++  L L
Sbjct: 393 EHDGHLYLGSFRSPYLCKLDL 413

Salmo salar (taxid: 8030)

>sp|Q803F5|APMAP_DANRE Adipocyte plasma membrane-associated protein OS=Danio rerio GN=apmap PE=2 SV=1

 Score =  109 bits (273), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/268 (29%), Positives = 129/268 (48%), Gaps = 26/268 (9%)

Query: 97  LGLTTTKDGGVILCDNEKGLLKVTEEG--VEAIVPDAS--------FTNDVIAASDGT-L 145
           LG+    +G + + D   GL +V      V+++V            F ND+    DG  +
Sbjct: 152 LGIRVGPNGTLFVADAYLGLFEVNPVTGEVKSLVSTEKRIAGRRLGFVNDLDVTQDGKKV 211

Query: 146 YFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVV 205
           YFT +S+++   DF   + E    G++ +YD + KE  V+ E   F NGI L  +E+ V+
Sbjct: 212 YFTDSSSRWQRRDFMHLIMEATADGRVLEYDTETKEVNVMMENLRFPNGIQLFPDEESVL 271

Query: 206 VCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQ 265
           V E+   R +R  + G   G +D FIENLPG PDNI  +  G +W+ +     + VR   
Sbjct: 272 VAETTMARIKRVHVSGLNKGGMDTFIENLPGFPDNIRRSSSGGYWVAM-----SAVRP-N 325

Query: 266 KCREKWELLDAYPGLISLLLPMGSDAG--------ARVVKVDGNDGKIIRDFNDPDATYI 317
                 + L   P L  L+  + S           + VV++  +DG  +R F+DP     
Sbjct: 326 PGFSMLDFLSQRPWLKKLIFKLFSQDTLLKFVPRYSLVVELQ-SDGTCVRSFHDPQGLVS 384

Query: 318 SFVTSAAEFDGNLYLASLQSNFIGILPL 345
           ++ + A E+ G+LYL S +S ++  L L
Sbjct: 385 AYSSEAHEYSGHLYLGSFRSPYLCKLDL 412

Danio rerio (taxid: 7955)

>sp|P94111|STS1_ARATH Strictosidine synthase 1 OS=Arabidopsis thaliana GN=SS1 PE=2 SV=2

 Score = 87.4 bits (215), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 100/205 (48%), Gaps = 32/205 (15%)

Query: 143 GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNED 202
           G +YFT  S++++P      +      G+L KYDP  K  TVL EG   + G A+S +  
Sbjct: 155 GVVYFTSFSSRFSPIQVLIALGLKDATGKLYKYDPSTKVVTVLMEGLSGSAGCAVSSDGS 214

Query: 203 FVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNI-NLAPDGSFWIGLIKMNQTGV 261
           FV+V +  K   +RYW+KG +AG  + F  ++   PDNI  +   G+FW+  + +N+   
Sbjct: 215 FVLVSQFTKSNIKRYWIKGPKAGSSEDFTNSV-SNPDNIKRIGSTGNFWVASV-VNK--- 269

Query: 262 RAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVT 321
                                +++P    A    VKV+ N G++++     D    + ++
Sbjct: 270 ---------------------IIVPTNPSA----VKVNSN-GEVLQTIPLKDKFGDTLLS 303

Query: 322 SAAEFDGNLYLASLQSNFIGILPLD 346
              EF+GNLY+ +L   F GIL L+
Sbjct: 304 EVNEFEGNLYIGTLTGPFAGILKLE 328

Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|P92976|STS3_ARATH Strictosidine synthase 3 OS=Arabidopsis thaliana GN=SS3 PE=2 SV=2

 Score = 84.7 bits (208), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/204 (30%), Positives = 93/204 (45%), Gaps = 32/204 (15%)

Query: 143 GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNED 202
           G +YFT  S+ + P D  K +A     G+  KYDP  K  TVL EG   + G A+S +  
Sbjct: 157 GVVYFTSFSSTFGPRDVLKAVATKDSTGKFFKYDPSKKVVTVLMEGLSGSAGCAVSSDGS 216

Query: 203 FVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNI-NLAPDGSFWIGLIKMNQTGV 261
           FV+V +  K   +RYW+KG +AG  + F  ++   PDNI  +   G+FW+  +  + TG 
Sbjct: 217 FVLVGQFTKSNIKRYWIKGSKAGTSEDFTNSVS-NPDNIKRIGSTGNFWVASVVNSATG- 274

Query: 262 RAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVT 321
                                   P    A    VKV  + GK+++     D    + V+
Sbjct: 275 ------------------------PTNPSA----VKVS-SAGKVLQTIPLKDKFGDTLVS 305

Query: 322 SAAEFDGNLYLASLQSNFIGILPL 345
              E+ G LY+ +L   F GIL L
Sbjct: 306 EVNEYKGQLYIGALFGPFAGILKL 329

Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|P68175|STSY_RAUSE Strictosidine synthase OS=Rauvolfia serpentina GN=STR1 PE=1 SV=1

 Score = 67.4 bits (163), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 56/109 (51%), Gaps = 2/109 (1%)

Query: 143 GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNED 202
           G +YFT  ST Y      + M      G+L KYDP  KETT+L +  +   G  +S +  
Sbjct: 160 GIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSS 219

Query: 203 FVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWI 251
           FV+V E    +  +YWL+G + G  +  ++ +P  P NI    DG FW+
Sbjct: 220 FVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IP-NPGNIKRNADGHFWV 266

Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis.

Rauvolfia serpentina (taxid: 4060)

EC: 4

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	355
297738547	461	unnamed protein product [Vitis vinifera]	0.952	0.733	0.485	2e-89
225444698	650	PREDICTED: adipocyte plasma membrane-ass	0.949	0.518	0.490	3e-89
357450079	372	Adipocyte plasma membrane-associated pro	0.957	0.913	0.494	7e-89
388499476	372	unknown [Medicago truncatula]	0.957	0.913	0.494	1e-88
225444696	365	PREDICTED: adipocyte plasma membrane-ass	0.932	0.906	0.502	8e-87
297738546	382	unnamed protein product [Vitis vinifera]	0.932	0.866	0.502	9e-87
357450077	352	Adipocyte plasma membrane-associated pro	0.946	0.954	0.481	2e-85
225444700	368	PREDICTED: adipocyte plasma membrane-ass	0.943	0.910	0.481	2e-85
388492006	352	unknown [Medicago truncatula]	0.946	0.954	0.478	6e-85
388507342	352	unknown [Medicago truncatula]	0.946	0.954	0.481	1e-84

>gi|297738547|emb|CBI27792.3| unnamed protein product [Vitis vinifera]

 Score =  335 bits (858), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 173/356 (48%), Positives = 246/356 (69%), Gaps = 18/356 (5%)

Query: 2   APKSFLLACLLAFTVQIFF-------SLSVSSLASLLSISKESSSMKGLTKLGEGCVNHP 54
           A  SF LA  LAFT+QI+F        L +  +++ L+    S+ ++ + K+GEG ++ P
Sbjct: 109 ACSSFALASTLAFTLQIYFFSPISPDPLHLPHVSATLNYPT-SNKLQEVAKIGEGLLDKP 167

Query: 55  EDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEK 114
           EDV     +G LYTATRDGW+K  +  N +  +W+ I   +LLG+TTT+ GG+++CD +K
Sbjct: 168 EDV-CFDGEGILYTATRDGWIKR-LHRNGSWEDWRLIGGDTLLGVTTTRTGGIVVCDTQK 225

Query: 115 GLLKVTEEGVEAIVPDAS-----FTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPY 169
           GLLKV E+GV  +    +     F +DVI ASDG+LYF+VAS+K+   D+Y D+ E KP+
Sbjct: 226 GLLKVGEDGVSLLTSHVNGSEIRFADDVIEASDGSLYFSVASSKFGLHDWYLDVLEAKPH 285

Query: 170 GQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDA 229
           GQL KYDP L ET++L +   FANG+ALS++EDF+VVCE+WKFRC +YWLKG+R G  + 
Sbjct: 286 GQLLKYDPLLNETSILLDNLAFANGVALSQDEDFLVVCETWKFRCLKYWLKGERKGRTEV 345

Query: 230 FIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGS 289
           F++NLPGGPDNINLAPDGSFWI L+++++ G+  +   +    L+  +P L+ L+   G 
Sbjct: 346 FVDNLPGGPDNINLAPDGSFWIALLELSREGMGFVHTSKASKHLVATFPKLLGLV--QGM 403

Query: 290 DAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPL 345
              A VVKV G DGK+++ FNDP+ + +SFVT+A EF+ +LYL SL +NFIG LPL
Sbjct: 404 QKKAMVVKV-GADGKMMKRFNDPNGSVMSFVTNALEFEEHLYLGSLNTNFIGKLPL 458

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444698|ref|XP_002277787.1| PREDICTED: adipocyte plasma membrane-associated protein-like [Vitis vinifera]

 Score =  335 bits (858), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 175/357 (49%), Positives = 247/357 (69%), Gaps = 20/357 (5%)

Query: 2   APKSFLLACLLAFTVQIFF-------SLSVSSLASLLSISKESSSMKGLTKLGEGCVNHP 54
           A  SF LA  LAFT+QI+F        L +  +++ L+    S+ ++ + K+GEG ++ P
Sbjct: 298 ACSSFALASTLAFTLQIYFFSPISPDPLHLPHVSATLNYPT-SNKLQEVAKIGEGLLDKP 356

Query: 55  EDVSVVVSKGALYTATRDGWVKYFILH-NETLVNWKHIDSQSLLGLTTTKDGGVILCDNE 113
           EDV     +G LYTATRDGW+K   LH N +  +W+ I   +LLG+TTT+ GG+++CD +
Sbjct: 357 EDV-CFDGEGILYTATRDGWIKR--LHRNGSWEDWRLIGGDTLLGVTTTRTGGIVVCDTQ 413

Query: 114 KGLLKVTEEGVEAIVPDAS-----FTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKP 168
           KGLLKV E+GV  +    +     F +DVI ASDG+LYF+VAS+K+   D+Y D+ E KP
Sbjct: 414 KGLLKVGEDGVSLLTSHVNGSEIRFADDVIEASDGSLYFSVASSKFGLHDWYLDVLEAKP 473

Query: 169 YGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILD 228
           +GQL KYDP L ET++L +   FANG+ALS++EDF+VVCE+WKFRC +YWLKG+R G  +
Sbjct: 474 HGQLLKYDPLLNETSILLDNLAFANGVALSQDEDFLVVCETWKFRCLKYWLKGERKGRTE 533

Query: 229 AFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMG 288
            F++NLPGGPDNINLAPDGSFWI L+++++ G+  +   +    L+  +P L+ L+   G
Sbjct: 534 VFVDNLPGGPDNINLAPDGSFWIALLELSREGMGFVHTSKASKHLVATFPKLLGLV--QG 591

Query: 289 SDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPL 345
               A VVKV G DGK+++ FNDP+ + +SFVT+A EF+ +LYL SL +NFIG LPL
Sbjct: 592 MQKKAMVVKV-GADGKMMKRFNDPNGSVMSFVTNALEFEEHLYLGSLNTNFIGKLPL 647

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357450079|ref|XP_003595316.1| Adipocyte plasma membrane-associated protein [Medicago truncatula] gi|355484364|gb|AES65567.1| Adipocyte plasma membrane-associated protein [Medicago truncatula]

 Score =  333 bits (854), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 176/356 (49%), Positives = 235/356 (66%), Gaps = 16/356 (4%)

Query: 5   SFLLACLLAFTVQIFFSLSVSSL------ASLLSISKESSSMKGLTKLGEGCVNHPEDVS 58
           S +LA L+A TVQ+F+   +  +      ++    S +++ ++ + KLGEG +  PEDV 
Sbjct: 22  SLVLASLVALTVQVFYFSPIDPVILEIPSSASSPSSTKNNQLQNVIKLGEGFLKQPEDVC 81

Query: 59  VVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLK 118
           V    G LYTATRDGW+K  +  NE   NWKHIDS SLLG+TT+KDGG+I+CD  +GLLK
Sbjct: 82  VD-KNGVLYTATRDGWIKRMV-RNENWENWKHIDSSSLLGITTSKDGGLIVCDASEGLLK 139

Query: 119 VTEEGVEAIVPDAS-----FTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLR 173
           VTE+G   I+   +     F +DVI ASDG +YF+V S K+   D+Y D+ E +P+GQL 
Sbjct: 140 VTEDGFSVILSQVNGSQLMFADDVIEASDGNIYFSVGSNKFGLHDWYLDLLEARPHGQLL 199

Query: 174 KYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIEN 233
           KY+P L ET ++ +   FANG+ALSK+ED+VVVCE+WKFRC R+WLKG   G  D FIEN
Sbjct: 200 KYNPTLNETVIVIDNLTFANGVALSKDEDYVVVCETWKFRCVRHWLKGINNGKTDIFIEN 259

Query: 234 LPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGA 293
           LPGGPDNINLAPDGSFWI L+++    +  +        LL ++P LI+L+    +   A
Sbjct: 260 LPGGPDNINLAPDGSFWIALVQLTSKRLGFVHTSIVCKHLLASFPRLINLI--NSATKSA 317

Query: 294 RVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLDGPE 349
            V+ V G +G IIR F D +   ISFVTSA EF+ +LYL SL S+F+G LPL   E
Sbjct: 318 MVLNV-GTEGNIIRKFGDNEGKVISFVTSAVEFEDHLYLGSLNSDFVGKLPLPSAE 372

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388499476|gb|AFK37804.1| unknown [Medicago truncatula]

 Score =  332 bits (852), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 176/356 (49%), Positives = 235/356 (66%), Gaps = 16/356 (4%)

Query: 5   SFLLACLLAFTVQIFFSLSVSSL------ASLLSISKESSSMKGLTKLGEGCVNHPEDVS 58
           S +LA L+A TVQ+F+   +  +      ++    S +++ ++ + KLGEG +  PEDV 
Sbjct: 22  SLVLASLVALTVQVFYFSPIDPVILEIPSSASSPSSTKNNQLQNVIKLGEGFLKQPEDVC 81

Query: 59  VVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLK 118
           V    G LYTATRDGW+K  +  NE   NWKHIDS SLLG+TT+KDGG+I+CD  +GLLK
Sbjct: 82  VD-KNGVLYTATRDGWIKRMV-RNENWENWKHIDSSSLLGITTSKDGGLIVCDASEGLLK 139

Query: 119 VTEEGVEAIVPDAS-----FTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLR 173
           VTE+G   I+   +     F +DVI ASDG +YF+V S K+   D+Y D+ E +P+GQL 
Sbjct: 140 VTEDGFSVILSQVNGSQLMFADDVIEASDGNIYFSVGSNKFGLHDWYLDLLEARPHGQLL 199

Query: 174 KYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIEN 233
           KY+P L ET ++ +   FANG+ALSK+ED+VVVCE+WKFRC R+WLKG   G  D FIEN
Sbjct: 200 KYNPTLNETVIVIDNLTFANGVALSKDEDYVVVCETWKFRCVRHWLKGIDNGKTDIFIEN 259

Query: 234 LPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGA 293
           LPGGPDNINLAPDGSFWI L+++    +  +        LL ++P LI+L+    +   A
Sbjct: 260 LPGGPDNINLAPDGSFWIALVQLTSKRLGFVHTSIVCKHLLASFPRLINLI--NSATKSA 317

Query: 294 RVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLDGPE 349
            V+ V G +G IIR F D +   ISFVTSA EF+ +LYL SL S+F+G LPL   E
Sbjct: 318 MVLNV-GTEGNIIRKFGDNEGKVISFVTSAVEFEDHLYLGSLNSDFVGKLPLPSAE 372

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444696|ref|XP_002277770.1| PREDICTED: adipocyte plasma membrane-associated protein-like [Vitis vinifera]

 Score =  327 bits (837), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 178/354 (50%), Positives = 238/354 (67%), Gaps = 23/354 (6%)

Query: 5   SFLLACLLAFTVQIFFSLSVSSLASLLSISKESSS-------MKGLTKLGEGCVNHPEDV 57
           + +LAC+LA  +QIF    +S    LL + + SS+       ++ + K+GEG ++ PEDV
Sbjct: 19  TVILACILASALQIFLFSPIS--PDLLQLPQPSSAALLTNKKLQEVAKIGEGLLDKPEDV 76

Query: 58  SVVVSKGALYTATRDGWVKYFILH-NETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGL 116
                +G LYTATRDGW+K   LH N +  +W+ I   SL+G+T T+ GG+I+CD EKGL
Sbjct: 77  -CFDGEGILYTATRDGWIKR--LHRNGSWEDWRLIGGGSLIGVTPTRTGGIIVCDIEKGL 133

Query: 117 LKVTEEGVEAIVPDAS-----FTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQ 171
           LKV E+GV  +    +     F NDVI A+DG++YF+VAST++   ++Y D+ E KP+GQ
Sbjct: 134 LKVGEDGVSILTSHVNGSKIKFANDVIEAADGSVYFSVASTEFV--NWYLDVLEAKPHGQ 191

Query: 172 LRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFI 231
           L KYDP L ET++L +   FANG+ALS++EDF+VVCE+WKFRC +YWL+G+R G  + FI
Sbjct: 192 LLKYDPLLNETSILLDNLAFANGVALSQDEDFLVVCETWKFRCLKYWLEGERKGRTETFI 251

Query: 232 ENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDA 291
           +NLPGGPDN+NLAPDGSFWI LIK+   G   +   +    LL  +P L  L+   GS  
Sbjct: 252 DNLPGGPDNVNLAPDGSFWIALIKVTSDGFEFVHTSKALKHLLATFPKLFQLV--KGSHK 309

Query: 292 GARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPL 345
            A VVKV   DGKII  F+DP+   ISFVTSA EF+  LYL SL +NFIGILPL
Sbjct: 310 KASVVKV-AADGKIIDKFDDPNGKVISFVTSALEFEDYLYLGSLNTNFIGILPL 362

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738546|emb|CBI27791.3| unnamed protein product [Vitis vinifera]

 Score =  326 bits (836), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 178/354 (50%), Positives = 238/354 (67%), Gaps = 23/354 (6%)

Query: 5   SFLLACLLAFTVQIFFSLSVSSLASLLSISKESSS-------MKGLTKLGEGCVNHPEDV 57
           + +LAC+LA  +QIF    +S    LL + + SS+       ++ + K+GEG ++ PEDV
Sbjct: 36  TVILACILASALQIFLFSPIS--PDLLQLPQPSSAALLTNKKLQEVAKIGEGLLDKPEDV 93

Query: 58  SVVVSKGALYTATRDGWVKYFILH-NETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGL 116
                +G LYTATRDGW+K   LH N +  +W+ I   SL+G+T T+ GG+I+CD EKGL
Sbjct: 94  -CFDGEGILYTATRDGWIKR--LHRNGSWEDWRLIGGGSLIGVTPTRTGGIIVCDIEKGL 150

Query: 117 LKVTEEGVEAIVPDAS-----FTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQ 171
           LKV E+GV  +    +     F NDVI A+DG++YF+VAST++   ++Y D+ E KP+GQ
Sbjct: 151 LKVGEDGVSILTSHVNGSKIKFANDVIEAADGSVYFSVASTEFV--NWYLDVLEAKPHGQ 208

Query: 172 LRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFI 231
           L KYDP L ET++L +   FANG+ALS++EDF+VVCE+WKFRC +YWL+G+R G  + FI
Sbjct: 209 LLKYDPLLNETSILLDNLAFANGVALSQDEDFLVVCETWKFRCLKYWLEGERKGRTETFI 268

Query: 232 ENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDA 291
           +NLPGGPDN+NLAPDGSFWI LIK+   G   +   +    LL  +P L  L+   GS  
Sbjct: 269 DNLPGGPDNVNLAPDGSFWIALIKVTSDGFEFVHTSKALKHLLATFPKLFQLV--KGSHK 326

Query: 292 GARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPL 345
            A VVKV   DGKII  F+DP+   ISFVTSA EF+  LYL SL +NFIGILPL
Sbjct: 327 KASVVKV-AADGKIIDKFDDPNGKVISFVTSALEFEDYLYLGSLNTNFIGILPL 379

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357450077|ref|XP_003595315.1| Adipocyte plasma membrane-associated protein [Medicago truncatula] gi|355484363|gb|AES65566.1| Adipocyte plasma membrane-associated protein [Medicago truncatula]

 Score =  322 bits (824), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 168/349 (48%), Positives = 232/349 (66%), Gaps = 13/349 (3%)

Query: 5   SFLLACLLAFTVQIFFSLSVS--SLASLLSISK-ESSSMKGLTKLGEGCVNHPEDVSVVV 61
           S +LA L+A TVQ+F+   +   SL    S+S  +++ ++ + KLGEG +  PEDV V  
Sbjct: 6   SLVLAALVALTVQVFYFSPIDPVSLEIPFSVSSTKNNQLQSVIKLGEGFLKQPEDVCVD- 64

Query: 62  SKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE 121
             G LYTATRDGW+K  +  NE   NWKHIDS SLLG+TT+KDGG+I+CD   GLLKVTE
Sbjct: 65  KDGVLYTATRDGWIKRMV-RNENWENWKHIDSSSLLGITTSKDGGLIVCDTTLGLLKVTE 123

Query: 122 EGVEAIVPDAS-----FTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYD 176
           +G   I+   +     F +D+I ASDG +YF+V STK+   ++Y D+ E +P+GQL +Y+
Sbjct: 124 DGFSVILSQVNGSQLIFADDIIEASDGNIYFSVPSTKFGLHNWYLDVLEARPHGQLLRYN 183

Query: 177 PKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPG 236
           P   ET ++ +   FANG+ALSK+ED++VVCE+WKFRC ++WLKG   G  + FIENLP 
Sbjct: 184 PLSNETVIVLDHLAFANGVALSKDEDYLVVCETWKFRCLKHWLKGINKGKTEIFIENLPA 243

Query: 237 GPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVV 296
           GPDNINLAPDGSFWI LI++    +  +   +    L+  +P L++++  +     A VV
Sbjct: 244 GPDNINLAPDGSFWIALIQVTSERMGFVHTSKVSKHLVALFPRLVNMINSVTK--SAMVV 301

Query: 297 KVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPL 345
           KV   +G II+ F D D   I+FVTSA EF+ NLYL SL ++F+G  PL
Sbjct: 302 KVT-TEGNIIKKFGDNDGKKITFVTSAVEFEDNLYLGSLNTDFVGKFPL 349

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444700|ref|XP_002277807.1| PREDICTED: adipocyte plasma membrane-associated protein [Vitis vinifera] gi|297738548|emb|CBI27793.3| unnamed protein product [Vitis vinifera]

 Score =  322 bits (824), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 170/353 (48%), Positives = 237/353 (67%), Gaps = 18/353 (5%)

Query: 5   SFLLACLLAFTVQIFF-------SLSVSSLASLLSISKESSSMKGLTKLGEGCVNHPEDV 57
           SF+LA +LA T+QI+F        L +  +++ +++   ++ ++ +TK+GEG +N PED+
Sbjct: 19  SFVLASILASTLQIYFFSPISPDPLHLPPVSAAINLPT-NNKLQEVTKIGEGFLNKPEDL 77

Query: 58  SVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLL 117
                +G LYTATRDGW+K  +  N +  +WK I   +LLG+TT + GG+ +CD +KGLL
Sbjct: 78  -CFDEEGILYTATRDGWIKR-LHRNGSWEDWKLIGGYALLGITTARAGGIFVCDAQKGLL 135

Query: 118 KVTEEGVEAIVPDAS-----FTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQL 172
           KV E+GV  +    +     F +DVI ASDG+LYF+VAS+K+    +Y D+ E KP+GQL
Sbjct: 136 KVGEDGVSFLTSHVNGSEIRFADDVIEASDGSLYFSVASSKFGLHHWYLDLLEAKPHGQL 195

Query: 173 RKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIE 232
            KYDP L ET+++ +   F NG+ALS++EDF+VVCE+WKFRC +YWLKG+R G  + FI+
Sbjct: 196 LKYDPLLNETSIILDNLAFPNGVALSQDEDFLVVCETWKFRCLKYWLKGERKGRTETFID 255

Query: 233 NLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAG 292
           NLP GPDNINLAPDGSFWI LIK+   G   +   +     L  +P L  L+   GS+  
Sbjct: 256 NLPNGPDNINLAPDGSFWIALIKLASDGFEFVHASKALKHFLATFPKLFQLV--NGSNEK 313

Query: 293 ARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPL 345
           A VVKV   DGKI+  F+DP+   +SFVTSA EF+ +LYL SL +NFIG LPL
Sbjct: 314 ATVVKV-AADGKIVDKFDDPNGKVMSFVTSALEFEDHLYLGSLNTNFIGKLPL 365

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492006|gb|AFK34069.1| unknown [Medicago truncatula]

 Score =  320 bits (820), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 167/349 (47%), Positives = 232/349 (66%), Gaps = 13/349 (3%)

Query: 5   SFLLACLLAFTVQIFFSLSVS--SLASLLSISK-ESSSMKGLTKLGEGCVNHPEDVSVVV 61
           S +LA L+A TVQ+F+   +   SL    S+S  +++ ++ + KLGEG +  PEDV V  
Sbjct: 6   SLVLAALVALTVQVFYFSPIDPVSLEIPFSVSSTKNNQLQSVIKLGEGFLKQPEDVCVD- 64

Query: 62  SKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE 121
             G LYTATRDGW+K  +  NE   NWKH+DS SLLG+TT+KDGG+I+CD   GLLKVTE
Sbjct: 65  KDGVLYTATRDGWIKRMV-RNENWENWKHVDSSSLLGITTSKDGGLIVCDTTLGLLKVTE 123

Query: 122 EGVEAIVPDAS-----FTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYD 176
           +G   I+   +     F +D+I ASDG +YF+V STK+   ++Y D+ E +P+GQL +Y+
Sbjct: 124 DGFSVILSQVNGSQLIFADDIIEASDGNIYFSVPSTKFGLHNWYLDVLEARPHGQLLRYN 183

Query: 177 PKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPG 236
           P   ET ++ +   FANG+ALSK+ED++VVCE+WKFRC ++WLKG   G  + FIENLP 
Sbjct: 184 PLSNETVIVLDHLAFANGVALSKDEDYLVVCETWKFRCLKHWLKGINKGKTEIFIENLPA 243

Query: 237 GPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVV 296
           GPDNINLAPDGSFWI LI++    +  +   +    L+  +P L++++  +     A VV
Sbjct: 244 GPDNINLAPDGSFWIALIQVTSERMGFVHTSKVSKYLVALFPRLVNMINSVTK--SAMVV 301

Query: 297 KVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPL 345
           KV   +G II+ F D D   I+FVTSA EF+ NLYL SL ++F+G  PL
Sbjct: 302 KVT-TEGNIIKKFGDNDGKKITFVTSAVEFEDNLYLGSLNTDFVGKFPL 349

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388507342|gb|AFK41737.1| unknown [Medicago truncatula]

 Score =  319 bits (818), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 168/349 (48%), Positives = 232/349 (66%), Gaps = 13/349 (3%)

Query: 5   SFLLACLLAFTVQIFFSLSVS--SLASLLSISK-ESSSMKGLTKLGEGCVNHPEDVSVVV 61
           S +LA L+A TVQ+F+   +   SL    S+S  +++ ++ + KLGEG +  PEDV V  
Sbjct: 6   SLVLAALVALTVQVFYFSPIDPVSLEIPFSVSSTKNNQLQSVIKLGEGFLKQPEDVCVD- 64

Query: 62  SKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE 121
             G LYTATRDGW+K  +  NE   NWKHIDS SLLG+TT+KDGG+I+CD   GLLKVTE
Sbjct: 65  KDGVLYTATRDGWIKRMV-RNENWENWKHIDSSSLLGITTSKDGGLIVCDTILGLLKVTE 123

Query: 122 EGVEAIVPDAS-----FTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYD 176
           +G   I+   +     F +D+I ASDG +YF+V STK+   ++Y D+ E +P+GQL +Y+
Sbjct: 124 DGFSVILSQVNGSQLIFADDIIEASDGNIYFSVPSTKFGLHNWYLDVLEARPHGQLLRYN 183

Query: 177 PKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPG 236
           P   ET ++ +   FANG+ALSK+ED++VVCE+WKFRC ++WLKG   G  + FIENLP 
Sbjct: 184 PLSNETVIVLDHLAFANGVALSKDEDYLVVCETWKFRCLKHWLKGINKGKTEIFIENLPA 243

Query: 237 GPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVV 296
           GPDNINLAPDGSFWI LI++    +  +   +    L+  +P L++++  +     A VV
Sbjct: 244 GPDNINLAPDGSFWIALIQVTSERMGFVHTFKVSKHLVALFPRLVNMINSVTK--FAMVV 301

Query: 297 KVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPL 345
           KV   +G II+ F D D   I+FVTSA EF+ NLYL SL ++F+G  PL
Sbjct: 302 KVT-TEGNIIKKFGDNDGKKITFVTSAVEFEDNLYLGSLNTDFVGKFPL 349

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	355
TAIR|locus:2081830	370	SSL4 "strictosidine synthase-l	0.825	0.791	0.344	1.5e-37
TAIR|locus:2081875	371	AT3G51450 [Arabidopsis thalian	0.819	0.784	0.327	1.2e-35
TAIR|locus:2081845	371	YLS2 "YELLOW-LEAF-SPECIFIC GEN	0.808	0.773	0.317	4e-35
TAIR|locus:2081860	371	AT3G51440 [Arabidopsis thalian	0.825	0.789	0.338	1.7e-34
TAIR|locus:504956439	395	AT5G22020 [Arabidopsis thalian	0.681	0.612	0.344	1.5e-28
UNIPROTKB|E2RPE9	415	APMAP "Uncharacterized protein	0.704	0.602	0.324	3.1e-28
TAIR|locus:2080565	370	AT3G57020 [Arabidopsis thalian	0.667	0.640	0.346	3.1e-28
UNIPROTKB|Q5ZIF1	415	APMAP "Adipocyte plasma membra	0.574	0.491	0.375	1e-27
TAIR|locus:2201841	390	SSL3 "strictosidine synthase-l	0.695	0.633	0.320	5.7e-27
UNIPROTKB|Q3T0E5	412	APMAP "Adipocyte plasma membra	0.684	0.589	0.315	9.4e-27

TAIR|locus:2081830 SSL4 "strictosidine synthase-like 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 110/319 (34%), Positives = 165/319 (51%)

Query:    40 MKGLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILH---NETLV-NWKHIDSQS 95
             + G   +G G +N+PED++       +YT   DGWVK   +H   N+++V +W +   + 
Sbjct:    56 LTGAEFIGVGLLNNPEDIAYHKDSNLIYTGCVDGWVKRVSVHDSANDSIVEDWVNTGGRP 115

Query:    96 LLGLTTTKDGGVILCDNEKGLLKVTEEG--VEAIVPDAS-----FTNDVIAASDGTLYFT 148
             L G+     G VI+ D  KGLL +++ G   E +  +A       T+ V  A +G LYFT
Sbjct:   116 L-GIAFGLHGEVIVADANKGLLSISDGGKKTELLTDEADGVRFKLTDAVTVADNGVLYFT 174

Query:   149 VASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCE 208
              AS+KY    F  D  EGKP+G++  +DP  + T VL +  YFANGI++S ++   V CE
Sbjct:   175 DASSKYDFYQFIFDFLEGKPHGRVMSFDPTTRATRVLLKDLYFANGISMSPDQTHFVFCE 234

Query:   209 SWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCR 268
             +   RC +Y++  +R   ++ FI+ LPG PDNI    DG +WI LI    T  +   K  
Sbjct:   235 TIMRRCSKYYISEER---VEVFIQGLPGYPDNIRYDGDGHYWIALISEVTTSWKLSMKYL 291

Query:   269 --EKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF 326
                K   + A  G + LL    S   A V++VD  DG  I  ++D      S +TS  + 
Sbjct:   292 FLRKLIYMAAKYG-VELL----SIKNAAVLQVD-LDGNPIAMYHDHP---FSHITSGVKI 342

Query:   327 DGNLYLASLQSNFIGILPL 345
               +LY  SL  ++I  L L
Sbjct:   343 GNHLYFGSLLHSYITRLDL 361

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

TAIR|locus:2081875 AT3G51450 [Arabidopsis thaliana (taxid:3702)]

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 105/321 (32%), Positives = 163/321 (50%)

Query:    40 MKGLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILH---NETLV-NWKHIDSQS 95
             + G   +G G +N PED++       +YT   DGWVK   +    N+++V +W +   + 
Sbjct:    56 LTGAEFIGVGLLNIPEDIAYHKESNLIYTGCVDGWVKRVKVADSVNDSVVEDWVNTGGRP 115

Query:    96 LLGLTTTKDGGVILCDNEKGLLKVTEEG--VEAIVPDAS-----FTNDVIAASDGTLYFT 148
             L G+     G VI+ D  KGLL ++ +G   E +  +A       T+ V  A +G LYFT
Sbjct:   116 L-GIAFGIHGEVIVADVHKGLLNISGDGKKTELLTDEADGVKFKLTDAVTVADNGVLYFT 174

Query:   149 VASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCE 208
              AS KYT      DM EGKP+G+L  +DP  + T VL +  YFANGI +S ++  ++ CE
Sbjct:   175 DASYKYTLNQLSLDMLEGKPFGRLLSFDPTTRVTKVLLKDLYFANGITISPDQTHLIFCE 234

Query:   209 SWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCR 268
             +   RC +Y++  +R   ++ F ++LPG PDNI    DG +WI L     +GV  +    
Sbjct:   235 TPMKRCSKYYISEER---VEVFTQSLPGYPDNIRYDGDGHYWIAL----PSGVTTLWNIS 287

Query:   269 EKWELLDAYPGLISLL---LPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAE 325
              K+  L     +++     L    +AG   V +DGN    I  ++DP  ++I+      +
Sbjct:   288 LKYPFLRKLTAMVAKYGVDLMFMENAGVLQVDLDGNP---IAYYHDPKLSHIATCDKIGK 344

Query:   326 FDGNLYLASLQSNFIGILPLD 346
             +   LY  SL  + I  L LD
Sbjct:   345 Y---LYCGSLSQSHI--LRLD 360

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0009611 "response to wounding" evidence=RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009694 "jasmonic acid metabolic process" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

TAIR|locus:2081845 YLS2 "YELLOW-LEAF-SPECIFIC GENE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
 Identities = 100/315 (31%), Positives = 163/315 (51%)

Query:    40 MKGLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILH---NETLV-NWKHIDSQS 95
             + G   +G G ++ PED++       +YT   DGWVK   +H   N+++V +W +   + 
Sbjct:    56 LTGAEFIGVGLLDKPEDIAYHQDSNLIYTGCIDGWVKRVSVHDSANDSVVEDWVNTGGRP 115

Query:    96 LLGLTTTKDGGVILCDNEKGLLKVTEEG--VEAIVPDAS---FT-NDVIAASD-GTLYFT 148
             L G+     G VI+ D  KGLL ++ +G   E +   A    F   DV+A +D G LYFT
Sbjct:   116 L-GIAFGVHGEVIVADAYKGLLNISGDGKKTELLTDQAEGVKFKLTDVVAVADNGVLYFT 174

Query:   149 VASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCE 208
              AS KYT      D+ EGKP+G+L  +DP  + T VL +  YFANG+++S ++  ++ CE
Sbjct:   175 DASYKYTLHQVKFDILEGKPHGRLMSFDPTTRVTRVLLKDLYFANGVSMSPDQTHLIFCE 234

Query:   209 SWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCR 268
             +   RC +Y++  +R   ++ FI+ LPG PDNI    DG +WI ++    +G   + +  
Sbjct:   235 TPMRRCSKYYINEER---VEVFIQGLPGYPDNIRYDGDGHYWIAMV----SGASTLWRLS 287

Query:   269 EKWELL---DAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAE 325
              K+  L    A      + L    +AG   V +DGN    I  ++D     +S +T+  +
Sbjct:   288 MKYPFLRKITAIAAKYGVELMFMKNAGVLQVDLDGNP---IAYYHDQR---LSHITTGIK 341

Query:   326 FDGNLYLASLQSNFI 340
                 LY  ++  ++I
Sbjct:   342 IGNYLYCGNILHSYI 356

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2081860 AT3G51440 [Arabidopsis thaliana (taxid:3702)]

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 108/319 (33%), Positives = 159/319 (49%)

Query:    40 MKGLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILH---NETLVNWKHIDSQSL 96
             + G   +G G +N PED++     G +YT   DGWVK   +    N++LV          
Sbjct:    56 LTGAEFIGVGLLNSPEDIAYHEDSGFIYTGCVDGWVKRVKVAESVNDSLVEDLVNTGGRP 115

Query:    97 LGLTTTKDGGVILCDNEKGLLKVTEEG--VEAIVPDASFTN----DVIAASD-GTLYFTV 149
             LG+     G VI+ D  KGLL ++ +G   E +  +A        D +  +D G LYFT 
Sbjct:   116 LGIAFGIHGEVIVADAYKGLLNISGDGKKTELLTEEADGVRFKLPDAVTVADNGVLYFTD 175

Query:   150 ASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCES 209
              S KY    F  D+ EGKP+G+L  +DP  K T VL    YFANG++LS ++  +V CE+
Sbjct:   176 GSYKYNLHQFSFDILEGKPHGRLMSFDPTTKVTRVLLRDLYFANGVSLSPDQTHLVFCET 235

Query:   210 WKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCRE 269
                RC +Y++ G R   ++ FI+ LPG PDNI    DG +WI +     +GV  + K   
Sbjct:   236 PIRRCSKYYINGGR---VELFIQGLPGYPDNIRYDGDGHYWIAM----PSGVTTLWKLSM 288

Query:   270 KWELLDAYPGLISLL--LPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFD 327
             K+  L     + +     PM  +  A V++VD  DG  I  ++D     +S +T+  +  
Sbjct:   289 KYPFLRKITAMAAKYGYEPMFME-NAGVLQVD-LDGNPIAYYHDQA---LSHITTGVKIG 343

Query:   328 GNLYLASLQSNFIGILPLD 346
               LY  SL  + I  L LD
Sbjct:   344 NYLYCGSLWHSHI--LRLD 360

GO:0005576 "extracellular region" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:504956439 AT5G22020 [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 96/279 (34%), Positives = 135/279 (48%)

Query:    89 KHIDSQSLLGLTTTK-DGGVILCDNEKGLLKVTEEGVEA--IVPDAS-----FTNDVIAA 140
             +HI  + L GL   K  G + + D   GLLKV  EG  A  +V +A      FTND+  A
Sbjct:   132 EHICGRPL-GLRFDKRTGDLYIADAYMGLLKVGPEGGLATPLVTEAEGVPLGFTNDLDIA 190

Query:   141 SDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKN 200
              DGT+YFT +S  Y   +F + +  G   G++ KYDP  K+  VL     F NG+++S++
Sbjct:   191 DDGTVYFTDSSISYQRRNFLQLVFSGDNTGRVLKYDPVAKKAVVLVSNLQFPNGVSISRD 250

Query:   201 EDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTG 260
               F V CE      RRYWLKG++AG  D F   LPG PDN+     G FW+ L       
Sbjct:   251 GSFFVFCEGDIGSLRRYWLKGEKAGTTDVFAY-LPGHPDNVRTNQKGEFWVAL------- 302

Query:   261 VRAIQKCREKWE--LLDAYPGL--ISLLLPMGS------DAGAR----VVKVDGNDGKII 306
                   CR  +   L+  YP L    L LP+ +        G R    VVK    +GK++
Sbjct:   303 -----HCRRNYYSYLMARYPKLRMFILRLPITARTHYSFQIGLRPHGLVVKYSP-EGKLM 356

Query:   307 RDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPL 345
                 D +   +  V+   E DG L++ S+  NF+ +  L
Sbjct:   357 HVLEDSEGKVVRSVSEVEEKDGKLWMGSVLMNFVAVYDL 395

GO:0005576 "extracellular region" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB|E2RPE9 APMAP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 85/262 (32%), Positives = 129/262 (49%)

Query:    96 LLGLTTTKDGGVILCDNEKGLLKVT--EEGVEAIVPDA--------SFTNDVIAASDGT- 144
             LLG+    +G + + D  KGL +V   +  V+ +V           SF ND+    DG  
Sbjct:   151 LLGIRAGPNGTLFVADAYKGLFEVNPWKREVKLLVSSEIPIEGRKMSFVNDLTITQDGKK 210

Query:   145 LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFV 204
             +YFT +S+K+   D+   + EG   G+L +YD + KE  VL +   F NG+ LS  EDFV
Sbjct:   211 IYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDMETKEVKVLLDQLRFPNGVQLSPEEDFV 270

Query:   205 VVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQT-GVRA 263
             +V E+   R RR+++ G   G  D F+ENLPG PDNI  +  G +W+G+  +    G   
Sbjct:   271 LVAETTMARIRRFYVSGLMKGGADLFVENLPGFPDNIRPSSSGGYWVGMATIRSNPGFSM 330

Query:   264 IQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSA 323
             +    E+  +      L S    M       +V    N G   R  +DP     S+V+  
Sbjct:   331 LDFLSERPYIKRMIFKLFSQETVMKFVPRYSLVLELSNSGAFRRSLHDPTGQVASYVSEV 390

Query:   324 AEFDGNLYLASLQSNFIGILPL 345
              E++G+LYL S ++ F+  L L
Sbjct:   391 HEYNGHLYLGSFRAPFLCRLSL 412

GO:0016020 "membrane" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0004064 "arylesterase activity" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

TAIR|locus:2080565 AT3G57020 [Arabidopsis thaliana (taxid:3702)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 87/251 (34%), Positives = 126/251 (50%)

Query:    97 LGLT-TTKDGGVILCDNEKGLLKVTEEG--VEAIVPDAS-----FTNDV-IAASDGTLYF 147
             LGLT   K G + +CD   GL+KV  EG   E IV +A      F N   I   +   YF
Sbjct:   111 LGLTFEKKTGDLYICDGYLGLMKVGPEGGLAELIVDEAEGRKVMFANQGDIDEEEDVFYF 170

Query:   148 TVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVC 207
               +S KY   D +     G+  G++ +YD K KE  V+ +     NG+AL+K+  F++ C
Sbjct:   171 NDSSDKYHFRDVFFVAVSGERSGRVIRYDKKTKEAKVIMDNLVCNNGLALNKDRSFLITC 230

Query:   208 ESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGL-IKMNQTGVRAIQK 266
             ES      RYW+KG +AG  D F + +PG PDNI L   G FWIGL  K N  G R I K
Sbjct:   231 ESGTSLVHRYWIKGPKAGTRDIFAK-VPGYPDNIRLTSTGDFWIGLHCKKNLIG-RLIVK 288

Query:   267 CREKWELLDAYPGLISLLLPM-GSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAE 325
              +   +L++    L  ++  + G       VK+ G  G+++    D +   + +V+ A E
Sbjct:   289 YKWLGKLVEKTMKLEYVIAFINGFKPHGVAVKISGETGEVLELLEDKEGKTMKYVSEAYE 348

Query:   326 FD-GNLYLASL 335
              D G L+  S+
Sbjct:   349 RDDGKLWFGSV 359

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0005773 "vacuole" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

UNIPROTKB|Q5ZIF1 APMAP "Adipocyte plasma membrane-associated protein" [Gallus gallus (taxid:9031)]

 Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 81/216 (37%), Positives = 113/216 (52%)

Query:   132 SFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFY 190
             SF ND+    DG  +YFT +S+K+   DF   + EG   G+L +YD   KE  VL  G  
Sbjct:   197 SFLNDLTVTQDGRKIYFTDSSSKWQRRDFLFLVMEGTDDGRLLEYDTVTKEVKVLMVGLR 256

Query:   191 FANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFW 250
             F NG+ LS  EDFV+V E+   R RRY++ G   G  D F+EN+PG PDNI L+  G +W
Sbjct:   257 FPNGVQLSPAEDFVLVLETAMARIRRYYVSGLMKGGADMFVENMPGLPDNIRLSSSGGYW 316

Query:   251 IGL-IKMNQTGVRAIQKCREK-WELLDAYPGL----ISLLLPMGSDAGARVVKVDGNDGK 304
             + + +     G   +    EK W     +  L    ++ LLP  S     VV++    G 
Sbjct:   317 VAMPVVRPNPGFSMLDFLSEKPWIKRMIFKLLSQETVTKLLPKRS----LVVELS-ETGS 371

Query:   305 IIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFI 340
               R F+DP    + +V+ A E +G LYL S +S FI
Sbjct:   372 YRRSFHDPTGLTVPYVSEAHEHNGYLYLGSFRSPFI 407

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004064 "arylesterase activity" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

TAIR|locus:2201841 SSL3 "strictosidine synthase-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
 Identities = 83/259 (32%), Positives = 127/259 (49%)

Query:    97 LGLT-TTKDGGVILCDNEKGLLKVTEEG--VEAIVPDAS-----FTNDVIAASDGTLYFT 148
             LGL    K+G + + D   G++KV  EG    ++  +A      FTND+    +G +YFT
Sbjct:   133 LGLRFDKKNGDLYIADAYLGIMKVGPEGGLATSVTNEADGVPLRFTNDLDIDDEGNVYFT 192

Query:   149 VASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCE 208
              +S+ +    F   +  G+  G++ KY+PK KETT L     F NG++L K+  F + CE
Sbjct:   193 DSSSFFQRRKFMLLIVSGEDSGRVLKYNPKTKETTTLVRNLQFPNGLSLGKDGSFFIFCE 252

Query:   209 SWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGL-IKMNQ-TGVRAIQK 266
                 R R+YWLKG++AG  +  +  L G PDNI    DG FW+ +    N  T + A   
Sbjct:   253 GSIGRLRKYWLKGEKAGTSEV-VALLHGFPDNIRTNKDGDFWVAVHCHRNIFTHLMAHYP 311

Query:   267 CREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF 326
                K+ L          LL +G    A  VK    +GK+++   D     +  V+   E 
Sbjct:   312 RVRKFFLKLPISVKFQYLLQVGGWPHAVAVKYS-EEGKVLKVLEDSKGKVVKAVSEVEEK 370

Query:   327 DGNLYLASLQSNFIGILPL 345
             DG L++ S+  +FI +  L
Sbjct:   371 DGKLWMGSVLMSFIAVYDL 389

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

UNIPROTKB|Q3T0E5 APMAP "Adipocyte plasma membrane-associated protein" [Bos taurus (taxid:9913)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 81/257 (31%), Positives = 128/257 (49%)

Query:    97 LGLTTTKDGGVILCDNEKGLLKVT--EEGVEAIVPDA--------SFTNDVIAASDGT-L 145
             LG+    +G + + D  KGL +V   +  V+ ++           SF ND+    DG  +
Sbjct:   152 LGIRAGPNGTLFVVDAYKGLFEVNPWKREVKLLLSSETPIEGRKMSFLNDLTVTRDGRKI 211

Query:   146 YFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVV 205
             YFT +S+K+   D+   + EG   G+L +YD + KE  VL +   F NG+ LS  EDFV+
Sbjct:   212 YFTDSSSKWQRRDYLLLLMEGTDDGRLLEYDTQTKEVKVLLDHLRFPNGVQLSPAEDFVL 271

Query:   206 VCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGL--IKMNQTGVRA 263
             V E    R RR+++ G   G  D F+ENLPG PDNI  +  G +W+ +  I+ N  G   
Sbjct:   272 VVELAMVRIRRFYVSGLMKGGADVFVENLPGFPDNIRASSSGGYWVSMAAIRANP-GFSM 330

Query:   264 IQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSA 323
             +    E+  L      L S    M       +V    + G  +R  +DP+   +++V+ A
Sbjct:   331 LDFLSERPFLKKVIFKLFSQETVMKFVPRYSLVLELSDSGTFLRSLHDPEGQVVTYVSEA 390

Query:   324 AEFDGNLYLASLQSNFI 340
              E  G+LYL S ++ ++
Sbjct:   391 HEHSGHLYLGSFRAPYL 407

GO:0009986 "cell surface" evidence=IEA

GO:0004064 "arylesterase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7TP48	APMAP_RAT	No assigned EC number	0.3068	0.8957	0.8457	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	355
pfam03088	89	pfam03088, Str_synth, Strictosidine synthase	2e-26
COG3386	307	COG3386, COG3386, Gluconolactonase [Carbohydrate t	2e-20
pfam08450	245	pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like re	9e-10

>gnl|CDD|111929 pfam03088, Str_synth, Strictosidine synthase

 Score =  100 bits (250), Expect = 2e-26
 Identities = 37/84 (44%), Positives = 48/84 (57%)

Query: 138 IAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIAL 197
           +    G LYFT +S++Y        M EG   G+L KYDP  K T VL +  YF NGIAL
Sbjct: 5   VDPETGVLYFTDSSSRYDRRQVIFAMLEGDKTGRLMKYDPSTKVTKVLLKDLYFPNGIAL 64

Query: 198 SKNEDFVVVCESWKFRCRRYWLKG 221
           S +  FV+ CE+   R  +YW+KG
Sbjct: 65  SPDGSFVLFCETPMKRISKYWIKG 88

Strictosidine synthase (E.C. 4.3.3.2) is a key enzyme in alkaloid biosynthesis. It catalyzes the condensation of tryptamine with secologanin to form strictosidine. Length = 89

>gnl|CDD|225921 COG3386, COG3386, Gluconolactonase [Carbohydrate transport and metabolism]

 Score = 89.8 bits (223), Expect = 2e-20
 Identities = 54/231 (23%), Positives = 79/231 (34%), Gaps = 47/231 (20%)

Query: 46  LGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVN---------WKHIDSQSL 96
           LGEG V  P+        GAL       WV   IL                +      S 
Sbjct: 26  LGEGPVWDPDR-------GALL------WVD--ILGGRIHRLDPETGKKRVFPSPGGFSS 70

Query: 97  LGLTTTKDGGVILCDNEKGLLKVTEEG-------VEAIVPDASFTNDVIAASDGTLYFTV 149
            G      G +I C++   LL     G        E  +P     ND +   DG ++F  
Sbjct: 71  -GALIDAGGRLIACEHGVRLLDPDTGGKITLLAEPEDGLPLNRP-NDGVVDPDGRIWFG- 127

Query: 150 ASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCES 209
                    F    +E +P G L + DP      +L +     NG+A S +   + V ++
Sbjct: 128 -----DMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADT 182

Query: 210 WKFRCRRYWLKGDRAGILDA------FIENLPGGPDNINLAPDGSFWIGLI 254
              R  RY L  D A             +  PG PD + +  DG+ W+  +
Sbjct: 183 PANRIHRYDL--DPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAV 231

Length = 307

>gnl|CDD|219847 pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region

 Score = 58.0 bits (141), Expect = 9e-10
 Identities = 51/226 (22%), Positives = 77/226 (34%), Gaps = 48/226 (21%)

Query: 46  LGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNW------KHIDSQSLLGL 99
           LGEG V   E+       GALY      WV   IL                 D    +G 
Sbjct: 1   LGEGPVWDEEE-------GALY------WVD--ILGGRIHRLDPATGKETVWDLPGPVGA 45

Query: 100 TT-TKDGGVILCDN-EKGLLKVTEEGVEAIV------PDASFTNDVIAASDGTLYFTVAS 151
                DG +I+       LL +    +  +       P   F ND     DG  +F    
Sbjct: 46  IALRDDGRLIVALKRGLALLDLDTGELTTLADLEPDEPLNRF-NDGKVDPDGRFWFG--- 101

Query: 152 TKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK 211
                     D+A G   G L + DP  K    + +G   +NG+A S +   +   +S  
Sbjct: 102 ------TMGFDIAPGGEPGALYRLDPDGK-VERVLDGITISNGLAWSPDGKTLYFADSPT 154

Query: 212 FRCRRY------WLKGDRAGILDAFIENLPGGPDNINLAPDGSFWI 251
            R   +       L  +R    D   ++  G PD + +  +G+ W+
Sbjct: 155 RRIWAFDYDADGGLISNRRVFAD--FKDGDGEPDGMAVDAEGNVWV 198

This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30), gluconolactonase and luciferin-regenerating enzyme (LRE). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 and LRE. Length = 245

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	355
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	100.0
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.96
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	99.96
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	99.88
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	99.81
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.79
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	99.78
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	99.7
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.64
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.63
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.63
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.6
PRK11028	330	6-phosphogluconolactonase; Provisional	99.58
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.52
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.48
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	99.37
PRK11028	330	6-phosphogluconolactonase; Provisional	99.33
COG3292	671	Predicted periplasmic ligand-binding sensor domain	99.29
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.28
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	99.28
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.22
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	99.19
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	99.19
COG3391	381	Uncharacterized conserved protein [Function unknow	99.11
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.99
COG3292	671	Predicted periplasmic ligand-binding sensor domain	98.97
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	98.96
COG3391	381	Uncharacterized conserved protein [Function unknow	98.91
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	98.89
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	98.86
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	98.79
PRK04792	448	tolB translocation protein TolB; Provisional	98.79
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.76
KOG1214	1289	consensus Nidogen and related basement membrane pr	98.75
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.73
PRK04922	433	tolB translocation protein TolB; Provisional	98.71
KOG1214	1289	consensus Nidogen and related basement membrane pr	98.71
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	98.71
PRK05137	435	tolB translocation protein TolB; Provisional	98.69
PRK02889	427	tolB translocation protein TolB; Provisional	98.69
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	98.68
PRK00178	430	tolB translocation protein TolB; Provisional	98.64
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	98.64
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	98.64
PRK05137	435	tolB translocation protein TolB; Provisional	98.61
PRK03629	429	tolB translocation protein TolB; Provisional	98.59
PRK04792	448	tolB translocation protein TolB; Provisional	98.57
PRK03629	429	tolB translocation protein TolB; Provisional	98.56
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	98.55
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	98.55
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.53
PRK04922	433	tolB translocation protein TolB; Provisional	98.51
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.51
PRK04043	419	tolB translocation protein TolB; Provisional	98.5
PRK01742	429	tolB translocation protein TolB; Provisional	98.46
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	98.45
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.45
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	98.44
PRK02889	427	tolB translocation protein TolB; Provisional	98.44
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.43
KOG0318	603	consensus WD40 repeat stress protein/actin interac	98.43
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.42
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	98.42
KOG0315	311	consensus G-protein beta subunit-like protein (con	98.4
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	98.39
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	98.38
PRK00178	430	tolB translocation protein TolB; Provisional	98.37
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	98.36
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.36
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.35
KOG0279	315	consensus G protein beta subunit-like protein [Sig	98.34
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.33
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	98.29
KOG0266	456	consensus WD40 repeat-containing protein [General	98.29
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.29
PRK04043	419	tolB translocation protein TolB; Provisional	98.29
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.26
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.18
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	98.14
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	98.12
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	98.06
KOG2055	514	consensus WD40 repeat protein [General function pr	98.05
PRK01742	429	tolB translocation protein TolB; Provisional	98.05
KOG0279	315	consensus G protein beta subunit-like protein [Sig	98.03
KOG0282	503	consensus mRNA splicing factor [Function unknown]	98.02
KOG0266	456	consensus WD40 repeat-containing protein [General	98.02
PTZ00421	493	coronin; Provisional	97.98
PRK01029	428	tolB translocation protein TolB; Provisional	97.96
COG4946	668	Uncharacterized protein related to the periplasmic	97.94
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.91
KOG1273	405	consensus WD40 repeat protein [General function pr	97.89
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.84
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.8
KOG0289	506	consensus mRNA splicing factor [General function p	97.78
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	97.78
PRK02888	635	nitrous-oxide reductase; Validated	97.78
PRK01029	428	tolB translocation protein TolB; Provisional	97.76
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	97.75
KOG0278	334	consensus Serine/threonine kinase receptor-associa	97.73
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	97.73
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.7
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	97.68
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	97.67
KOG0316	307	consensus Conserved WD40 repeat-containing protein	97.67
KOG0318	603	consensus WD40 repeat stress protein/actin interac	97.67
KOG0286	343	consensus G-protein beta subunit [General function	97.64
KOG0275	508	consensus Conserved WD40 repeat-containing protein	97.63
KOG1274	933	consensus WD40 repeat protein [General function pr	97.58
PLN00181	793	protein SPA1-RELATED; Provisional	97.55
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.54
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	97.53
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	97.52
COG1520	370	FOG: WD40-like repeat [Function unknown]	97.51
KOG0263	707	consensus Transcription initiation factor TFIID, s	97.51
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	97.5
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.49
COG4946	668	Uncharacterized protein related to the periplasmic	97.49
KOG2106	626	consensus Uncharacterized conserved protein, conta	97.48
PTZ00420	568	coronin; Provisional	97.47
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.44
KOG0294	362	consensus WD40 repeat-containing protein [Function	97.44
PLN00181	793	protein SPA1-RELATED; Provisional	97.43
KOG1539	910	consensus WD repeat protein [General function pred	97.42
PRK13684	334	Ycf48-like protein; Provisional	97.36
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	97.36
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	97.34
PRK13684	334	Ycf48-like protein; Provisional	97.33
KOG2106	626	consensus Uncharacterized conserved protein, conta	97.3
KOG0275	508	consensus Conserved WD40 repeat-containing protein	97.25
KOG0289	506	consensus mRNA splicing factor [General function p	97.24
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	97.23
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.22
KOG2055	514	consensus WD40 repeat protein [General function pr	97.18
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	97.17
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.16
KOG0315	311	consensus G-protein beta subunit-like protein (con	97.13
PTZ00421	493	coronin; Provisional	97.12
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	97.1
PRK02888	635	nitrous-oxide reductase; Validated	97.09
KOG0263	707	consensus Transcription initiation factor TFIID, s	97.07
KOG0293	519	consensus WD40 repeat-containing protein [Function	97.04
PF13449	326	Phytase-like: Esterase-like activity of phytase	97.03
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.03
KOG2048	691	consensus WD40 repeat protein [General function pr	97.01
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	97.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	97.0
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.99
KOG1274	933	consensus WD40 repeat protein [General function pr	96.99
COG3211	616	PhoX Predicted phosphatase [General function predi	96.97
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	96.96
PTZ00420	568	coronin; Provisional	96.95
KOG0303	472	consensus Actin-binding protein Coronin, contains	96.94
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	96.89
KOG0643	327	consensus Translation initiation factor 3, subunit	96.89
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.87
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	96.86
PHA02713	557	hypothetical protein; Provisional	96.7
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.69
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.66
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	96.65
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	96.63
PF13449	326	Phytase-like: Esterase-like activity of phytase	96.63
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	96.61
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	96.6
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.59
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.55
COG3211	616	PhoX Predicted phosphatase [General function predi	96.54
KOG0296	399	consensus Angio-associated migratory cell protein	96.54
KOG0286	343	consensus G-protein beta subunit [General function	96.5
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	96.42
KOG0772	641	consensus Uncharacterized conserved protein, conta	96.4
PLN00033	398	photosystem II stability/assembly factor; Provisio	96.4
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	96.39
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	96.27
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	96.23
KOG0283	712	consensus WD40 repeat-containing protein [Function	96.22
KOG0640	430	consensus mRNA cleavage stimulating factor complex	96.21
KOG0646	476	consensus WD40 repeat protein [General function pr	96.14
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.08
KOG0301	745	consensus Phospholipase A2-activating protein (con	96.05
KOG0282	503	consensus mRNA splicing factor [Function unknown]	96.04
KOG2139	445	consensus WD40 repeat protein [General function pr	96.03
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	96.0
KOG1273	405	consensus WD40 repeat protein [General function pr	95.97
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	95.92
PLN00033	398	photosystem II stability/assembly factor; Provisio	95.92
PHA02713	557	hypothetical protein; Provisional	95.81
KOG0639	705	consensus Transducin-like enhancer of split protei	95.76
KOG0639	705	consensus Transducin-like enhancer of split protei	95.68
KOG0771	398	consensus Prolactin regulatory element-binding pro	95.55
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	95.54
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	95.53
KOG0772	641	consensus Uncharacterized conserved protein, conta	95.49
PRK13616	591	lipoprotein LpqB; Provisional	95.45
COG4247	364	Phy 3-phytase (myo-inositol-hexaphosphate 3-phosph	95.42
KOG0296	399	consensus Angio-associated migratory cell protein	95.37
KOG1539	910	consensus WD repeat protein [General function pred	95.31
KOG0293	519	consensus WD40 repeat-containing protein [Function	95.31
KOG0310	487	consensus Conserved WD40 repeat-containing protein	95.29
COG1520	370	FOG: WD40-like repeat [Function unknown]	95.23
KOG0284	464	consensus Polyadenylation factor I complex, subuni	95.21
PF07494	24	Reg_prop: Two component regulator propeller; Inter	95.2
KOG0283	712	consensus WD40 repeat-containing protein [Function	95.16
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	95.1
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	95.07
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	95.03
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	94.97
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	94.89
KOG3881	412	consensus Uncharacterized conserved protein [Funct	94.84
PHA02790	480	Kelch-like protein; Provisional	94.77
KOG0645	312	consensus WD40 repeat protein [General function pr	94.7
KOG0316	307	consensus Conserved WD40 repeat-containing protein	94.66
KOG0288	459	consensus WD40 repeat protein TipD [General functi	94.61
KOG0649	325	consensus WD40 repeat protein [General function pr	94.53
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	94.51
KOG0646	476	consensus WD40 repeat protein [General function pr	94.51
PF14517	229	Tachylectin: Tachylectin; PDB: 1TL2_A.	94.46
KOG3881	412	consensus Uncharacterized conserved protein [Funct	94.4
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	94.39
KOG1407	313	consensus WD40 repeat protein [Function unknown]	94.37
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	94.3
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	94.29
KOG0973	942	consensus Histone transcription regulator HIRA, WD	94.29
KOG2110	391	consensus Uncharacterized conserved protein, conta	94.26
KOG0973	942	consensus Histone transcription regulator HIRA, WD	94.22
KOG0640	430	consensus mRNA cleavage stimulating factor complex	94.19
PHA03098	534	kelch-like protein; Provisional	94.11
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	93.96
KOG0308	735	consensus Conserved WD40 repeat-containing protein	93.92
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	93.9
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	93.87
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	93.82
PF14517	229	Tachylectin: Tachylectin; PDB: 1TL2_A.	93.75
PHA02790	480	Kelch-like protein; Provisional	93.62
KOG2048	691	consensus WD40 repeat protein [General function pr	93.6
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	93.49
KOG2321	703	consensus WD40 repeat protein [General function pr	93.41
KOG0288	459	consensus WD40 repeat protein TipD [General functi	93.39
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	93.2
PF07494	24	Reg_prop: Two component regulator propeller; Inter	93.17
KOG0295	406	consensus WD40 repeat-containing protein [Function	93.16
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	92.89
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	92.71
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	92.64
KOG2139	445	consensus WD40 repeat protein [General function pr	92.53
KOG2096	420	consensus WD40 repeat protein [General function pr	92.52
KOG2321	703	consensus WD40 repeat protein [General function pr	92.48
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	92.41
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	92.28
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	92.22
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	92.01
KOG1407	313	consensus WD40 repeat protein [Function unknown]	91.92
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	91.63
KOG2110	391	consensus Uncharacterized conserved protein, conta	91.61
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	91.49
KOG0310	487	consensus Conserved WD40 repeat-containing protein	91.44
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	91.35
KOG4547	541	consensus WD40 repeat-containing protein [General	91.14
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	91.06
KOG0294	362	consensus WD40 repeat-containing protein [Function	91.01
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	90.99
PHA03098	534	kelch-like protein; Provisional	90.97
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	90.64
KOG0284	464	consensus Polyadenylation factor I complex, subuni	90.52
KOG0301	745	consensus Phospholipase A2-activating protein (con	90.46
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	90.43
KOG2096	420	consensus WD40 repeat protein [General function pr	90.38
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	90.22
KOG4328	498	consensus WD40 protein [Function unknown]	89.97
KOG0645	312	consensus WD40 repeat protein [General function pr	89.91
PF07172	95	GRP: Glycine rich protein family; InterPro: IPR010	89.9
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	89.61
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	89.6
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	89.42
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	89.32
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	89.25
KOG0295	406	consensus WD40 repeat-containing protein [Function	88.68
KOG1215	877	consensus Low-density lipoprotein receptors contai	88.01
KOG0643	327	consensus Translation initiation factor 3, subunit	87.89
KOG1963	792	consensus WD40 repeat protein [General function pr	87.73
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	87.38
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	87.33
PF13570	40	PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.	87.3
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	87.2
PF14339	236	DUF4394: Domain of unknown function (DUF4394)	86.8
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	86.79
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	86.64
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	85.77
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	85.64
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	85.5
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	85.29
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	84.82
KOG4547	541	consensus WD40 repeat-containing protein [General	84.52
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	83.6
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	83.47
KOG0647	347	consensus mRNA export protein (contains WD40 repea	83.46
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	83.15
PF06739	38	SBBP: Beta-propeller repeat; InterPro: IPR010620 T	82.84
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	82.7
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	82.65
KOG0308	735	consensus Conserved WD40 repeat-containing protein	82.6
KOG0303	472	consensus Actin-binding protein Coronin, contains	82.32
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	82.22
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	81.84
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	81.82
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	81.61
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	81.39
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	81.29
KOG2111	346	consensus Uncharacterized conserved protein, conta	81.26
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	81.24
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	81.21
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	80.72

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=100.00  E-value=5.7e-45  Score=324.07  Aligned_cols=307  Identities=35%  Similarity=0.564  Sum_probs=256.7

Q ss_pred             CcCccCceEecCCCCCCCceEEEeeCCC-eEEEEecCCEEEEEEcC--CC--e-----eEEeeccCCCcccCeEECCCC-
Q 018474           37 SSSMKGLTKLGEGCVNHPEDVSVVVSKG-ALYTATRDGWVKYFILH--NE--T-----LVNWKHIDSQSLLGLTTTKDG-  105 (355)
Q Consensus        37 ~~~l~~~~~~~~~~~~~p~~i~~d~~~g-~l~~~~~~g~i~~~~~~--~g--~-----~~~~~~~~~~p~~gl~~d~~g-  105 (355)
                      +..++..|.+..+....|+++.+. ++. ..|.+..+|.+-+.+.+  ..  .     .......|++|. ||+++..| 
T Consensus        50 ~~~~~g~E~~~fd~~~~gp~~~v~-dg~il~~~g~~~Gwv~~~~~~~s~~~~~~~~~~~~~~e~~CGRPL-Gl~f~~~gg  127 (376)
T KOG1520|consen   50 NNHLTGPESLLFDPQGGGPYTGVV-DGRILKYTGNDDGWVKFADTKDSTNRSQCCDPGSFETEPLCGRPL-GIRFDKKGG  127 (376)
T ss_pred             ccccCChhhheecccCCCceEEEE-CCceEEEeccCceEEEEEeccccccccccCCCcceecccccCCcc-eEEeccCCC
Confidence            344555555554444445555555 343 36777778877776651  11  0     112234579999 99999777 


Q ss_pred             CEEEEeCCCcEEEEcCCC--eEEEcCCc-----CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCC
Q 018474          106 GVILCDNEKGLLKVTEEG--VEAIVPDA-----SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPK  178 (355)
Q Consensus       106 ~L~v~~~~~gl~~~~~~g--~~~~~~~~-----~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~  178 (355)
                      +|||||...|++.++++|  .+.+++..     .+.|++.++++|.+||||++++|..+++.+.++++.++|++++|||.
T Consensus       128 dL~VaDAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~  207 (376)
T KOG1520|consen  128 DLYVADAYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPS  207 (376)
T ss_pred             eEEEEecceeeEEECCCCCcceeccccccCeeeeecCceeEcCCCeEEEeccccccchhheEEeeecCCCccceEEecCc
Confidence            899999999999999755  55555443     89999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeecCCc
Q 018474          179 LKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQ  258 (355)
Q Consensus       179 ~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~  258 (355)
                      +++.+++.+++.+|||+++|||+.++.+||+...||.|||+++.+.++.+.|++++||+||||..|++|++||+....++
T Consensus       208 tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~gt~EvFa~~LPG~PDNIR~~~~G~fWVal~~~~~  287 (376)
T KOG1520|consen  208 TKVTKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKAGTSEVFAEGLPGYPDNIRRDSTGHFWVALHSKRS  287 (376)
T ss_pred             ccchhhhhhcccccccccCCCCCCEEEEEeeccceeeeeEecCCccCchhhHhhcCCCCCcceeECCCCCEEEEEecccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHhhhcchhHHHHHHhccchhhcccCCC--CCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeCCEEEEeecC
Q 018474          259 TGVRAIQKCREKWELLDAYPGLISLLLPMG--SDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQ  336 (355)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~  336 (355)
                      ...+++.++|++|+++.++|....+++.+.  ..++..|.+.|. +|++++++++++|.+...++.+.+++|+||+|+..
T Consensus       288 ~~~~~~~~~p~vr~~~~~~~~~~~~~~~~~~~~~p~~~V~~~d~-~G~il~~lhD~~g~~~~~~sev~E~dg~LyiGS~~  366 (376)
T KOG1520|consen  288 TLWRLLMKYPWVRKFIAKLPKYMELLYFLNNGGKPHSAVKLSDE-TGKILESLHDKEGKVITLVSEVGEHDGHLYIGSLF  366 (376)
T ss_pred             hHHHhhhcChHHHHHHHhhccchhhhhhhhccCCCceEEEEecC-CCcEEEEEecCCCCceEEEEEEeecCCeEEEcccC
Confidence            999999999999999999988777654432  123356666678 99999999999998777888888889999999999


Q ss_pred             CCeEEEeeCC
Q 018474          337 SNFIGILPLD  346 (355)
Q Consensus       337 ~~~i~~~~~~  346 (355)
                      .++|.|++|.
T Consensus       367 ~p~i~~lkl~  376 (376)
T KOG1520|consen  367 NPYIARLKLP  376 (376)
T ss_pred             cceeEEEecC
Confidence            9999999874

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.96  E-value=1.1e-26  Score=206.12  Aligned_cols=227  Identities=27%  Similarity=0.385  Sum_probs=174.1

Q ss_pred             CceEEEeeCCCeEEEEe-cCCEEEEEEcCCCeeEEeeccCCCcccCeEEC-CCCCEEEEeCCCcEEEEc-CCC-eEEEcC
Q 018474           54 PEDVSVVVSKGALYTAT-RDGWVKYFILHNETLVNWKHIDSQSLLGLTTT-KDGGVILCDNEKGLLKVT-EEG-VEAIVP  129 (355)
Q Consensus        54 p~~i~~d~~~g~l~~~~-~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d-~~g~L~v~~~~~gl~~~~-~~g-~~~~~~  129 (355)
                      ||++++++.++.||+.. .+++|+++++.+++...+....  |. |++++ ++|+||+++. .++..++ .++ ++.+..
T Consensus         2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~--~~-G~~~~~~~g~l~v~~~-~~~~~~d~~~g~~~~~~~   77 (246)
T PF08450_consen    2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG--PN-GMAFDRPDGRLYVADS-GGIAVVDPDTGKVTVLAD   77 (246)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS--EE-EEEEECTTSEEEEEET-TCEEEEETTTTEEEEEEE
T ss_pred             CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC--Cc-eEEEEccCCEEEEEEc-CceEEEecCCCcEEEEee
Confidence            79999996477777655 5899999999888776654433  88 99998 8899999985 4677778 467 555433


Q ss_pred             ------CcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCE
Q 018474          130 ------DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDF  203 (355)
Q Consensus       130 ------~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~  203 (355)
                            ....||++++|++|+||++++......         ....|++|+++++ ++.+.+..++..||||++++|++.
T Consensus        78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~---------~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~  147 (246)
T PF08450_consen   78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGAS---------GIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKT  147 (246)
T ss_dssp             EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTT---------CGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSE
T ss_pred             ccCCCcccCCCceEEEcCCCCEEEEecCCCccc---------cccccceEEECCC-CeEEEEecCcccccceEECCcchh
Confidence                  238999999999999999987521100         0001789999998 888888888999999999999999


Q ss_pred             EEEEeCCCCeEEEEEeCCC--CCcceeEecc--cCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccc
Q 018474          204 VVVCESWKFRCRRYWLKGD--RAGILDAFIE--NLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPG  279 (355)
Q Consensus       204 l~v~~~~~~~i~~~~~~~~--~~~~~~~~~~--~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (355)
                      ||++++..++|++|+++..  .....+.+.+  ...+.|||+++|++|+|||+....                       
T Consensus       148 lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~-----------------------  204 (246)
T PF08450_consen  148 LYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGG-----------------------  204 (246)
T ss_dssp             EEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETT-----------------------
T ss_pred             eeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCC-----------------------
Confidence            9999999999999999642  2445555543  222469999999999999998753                       


Q ss_pred             hhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEe---CCEEEEeec
Q 018474          280 LISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF---DGNLYLASL  335 (355)
Q Consensus       280 ~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~---~g~L~v~~~  335 (355)
                                   +.|.+|+| +|+.+..+..|..    .++.+++.   .++|||++.
T Consensus       205 -------------~~I~~~~p-~G~~~~~i~~p~~----~~t~~~fgg~~~~~L~vTta  245 (246)
T PF08450_consen  205 -------------GRIVVFDP-DGKLLREIELPVP----RPTNCAFGGPDGKTLYVTTA  245 (246)
T ss_dssp             -------------TEEEEEET-TSCEEEEEE-SSS----SEEEEEEESTTSSEEEEEEB
T ss_pred             -------------CEEEEECC-CccEEEEEcCCCC----CEEEEEEECCCCCEEEEEeC
Confidence                         58999999 8999999988732    57777774   388999985

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=99.96  E-value=7.5e-26  Score=203.59  Aligned_cols=240  Identities=23%  Similarity=0.353  Sum_probs=181.8

Q ss_pred             CCCCceEEEeeCCC-eEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEc-CCC-e-EE
Q 018474           51 VNHPEDVSVVVSKG-ALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT-EEG-V-EA  126 (355)
Q Consensus        51 ~~~p~~i~~d~~~g-~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~-~~g-~-~~  126 (355)
                      ..-.|+.++++..+ .+|+....++|+++++.+|+.+.+......+. ++..|..|+|+++..  |+++++ +++ . +.
T Consensus        24 ~~~gEgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~-~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~  100 (307)
T COG3386          24 ATLGEGPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSS-GALIDAGGRLIACEH--GVRLLDPDTGGKITL  100 (307)
T ss_pred             cccccCccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCCccc-ceeecCCCeEEEEcc--ccEEEeccCCceeEE
Confidence            45567777886666 46677789999999998898888877666677 888999999998875  455555 445 4 55


Q ss_pred             EcCCc-----CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCC
Q 018474          127 IVPDA-----SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNE  201 (355)
Q Consensus       127 ~~~~~-----~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg  201 (355)
                      +....     +.+|++.++++|.+||+++.. ..     ....+....|.||++||.++..+.+...+..|||||+|||+
T Consensus       101 ~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~-~~-----~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg  174 (307)
T COG3386         101 LAEPEDGLPLNRPNDGVVDPDGRIWFGDMGY-FD-----LGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDG  174 (307)
T ss_pred             eccccCCCCcCCCCceeEcCCCCEEEeCCCc-cc-----cCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCC
Confidence            55432     899999999999999999873 11     22223355678999999655555555559999999999999


Q ss_pred             CEEEEEeCCCCeEEEEEeC---CCCCcc-eeEecccCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhc
Q 018474          202 DFVVVCESWKFRCRRYWLK---GDRAGI-LDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAY  277 (355)
Q Consensus       202 ~~l~v~~~~~~~i~~~~~~---~~~~~~-~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (355)
                      +.+|++++..++|++|+.+   +...+. ...+.+..+|.|||+++|++|+||++...+                     
T Consensus       175 ~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~---------------------  233 (307)
T COG3386         175 KTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWG---------------------  233 (307)
T ss_pred             CEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccC---------------------
Confidence            9999999999999999986   222222 123344567999999999999999755442                     


Q ss_pred             cchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeC---CEEEEeecCCCe
Q 018474          278 PGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFD---GNLYLASLQSNF  339 (355)
Q Consensus       278 ~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~---g~L~v~~~~~~~  339 (355)
                                    .++|.+|+| +|+.+..+..|..    .++..++.+   +.|||++...+.
T Consensus       234 --------------g~~v~~~~p-dG~l~~~i~lP~~----~~t~~~FgG~~~~~L~iTs~~~~~  279 (307)
T COG3386         234 --------------GGRVVRFNP-DGKLLGEIKLPVK----RPTNPAFGGPDLNTLYITSARSGM  279 (307)
T ss_pred             --------------CceEEEECC-CCcEEEEEECCCC----CCccceEeCCCcCEEEEEecCCCC
Confidence                          148999999 8999999999863    455566654   899999987743

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=99.88  E-value=3.2e-20  Score=157.77  Aligned_cols=242  Identities=16%  Similarity=0.133  Sum_probs=183.7

Q ss_pred             eEecCCCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeecc-CCCcccCeEECCCCCEEEEeCCCcEEEEcC-
Q 018474           44 TKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI-DSQSLLGLTTTKDGGVILCDNEKGLLKVTE-  121 (355)
Q Consensus        44 ~~~~~~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~-~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~-  121 (355)
                      ..++.....+|..++.++++-.+|.+...|.|-++||++|+.+++... +.+|+ ++..++||..|+++.+.+|.|+++ 
T Consensus        54 ~~fpvp~G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Ph-giv~gpdg~~Witd~~~aI~R~dpk  132 (353)
T COG4257          54 AEFPVPNGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPH-GIVVGPDGSAWITDTGLAIGRLDPK  132 (353)
T ss_pred             ceeccCCCCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCc-eEEECCCCCeeEecCcceeEEecCc
Confidence            456666668999999995444566667788899999999999988654 56899 999999999999998889999994 


Q ss_pred             CC-eEEEcCCc----CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee-ccccccccE
Q 018474          122 EG-VEAIVPDA----SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFYFANGI  195 (355)
Q Consensus       122 ~g-~~~~~~~~----~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~-~~~~~pngi  195 (355)
                      ++ ++++.-..    ...+..++|++|+|||+...                  |.--|.||.++.++++. .....|+||
T Consensus       133 t~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~------------------G~yGrLdPa~~~i~vfpaPqG~gpyGi  194 (353)
T COG4257         133 TLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQI------------------GAYGRLDPARNVISVFPAPQGGGPYGI  194 (353)
T ss_pred             ccceEEeecccccCCCcccceeeCCCccEEEeecc------------------ccceecCcccCceeeeccCCCCCCcce
Confidence            66 77764432    67888999999999999654                  22337899888887773 445679999


Q ss_pred             EEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecc--cCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHH
Q 018474          196 ALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIE--NLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWEL  273 (355)
Q Consensus       196 ~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~  273 (355)
                      |.+|||. +|+++...+-|.++|...   +..+.+..  .+.--.+.+-.|+.|++|+++...                 
T Consensus       195 ~atpdGs-vwyaslagnaiaridp~~---~~aev~p~P~~~~~gsRriwsdpig~~wittwg~-----------------  253 (353)
T COG4257         195 CATPDGS-VWYASLAGNAIARIDPFA---GHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGT-----------------  253 (353)
T ss_pred             EECCCCc-EEEEeccccceEEccccc---CCcceecCCCcccccccccccCccCcEEEeccCC-----------------
Confidence            9999998 999988888999998633   23333321  111113456789999999998762                 


Q ss_pred             HHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEe-CCEEEEeecCCCeEEEeeCCC
Q 018474          274 LDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-DGNLYLASLQSNFIGILPLDG  347 (355)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~~~~  347 (355)
                                         +.+.+||| .-+.-..|..|...  ....++..+ .|++|+.....+.|.|++..+
T Consensus       254 -------------------g~l~rfdP-s~~sW~eypLPgs~--arpys~rVD~~grVW~sea~agai~rfdpet  306 (353)
T COG4257         254 -------------------GSLHRFDP-SVTSWIEYPLPGSK--ARPYSMRVDRHGRVWLSEADAGAIGRFDPET  306 (353)
T ss_pred             -------------------ceeeEeCc-ccccceeeeCCCCC--CCcceeeeccCCcEEeeccccCceeecCccc
Confidence                               57999999 55557788777642  234455554 599999999999999987554

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=99.81  E-value=8.2e-20  Score=132.42  Aligned_cols=88  Identities=52%  Similarity=0.946  Sum_probs=74.1

Q ss_pred             ccEEEccC-CcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCCCe
Q 018474          135 NDVIAASD-GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFR  213 (355)
Q Consensus       135 ~~l~~d~d-G~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~  213 (355)
                      |+++++++ |.|||||++.+|...++...++++.++|++++|||++++.+++..++.+||||++++|+.+++++|+.+.|
T Consensus         1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~~R   80 (89)
T PF03088_consen    1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGRYR   80 (89)
T ss_dssp             -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGGTE
T ss_pred             CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccCce
Confidence            68999998 89999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCC
Q 018474          214 CRRYWLKGD  222 (355)
Q Consensus       214 i~~~~~~~~  222 (355)
                      |.|||++|+
T Consensus        81 i~rywl~Gp   89 (89)
T PF03088_consen   81 ILRYWLKGP   89 (89)
T ss_dssp             EEEEESSST
T ss_pred             EEEEEEeCC
Confidence            999999763

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.79  E-value=4.1e-16  Score=162.54  Aligned_cols=245  Identities=19%  Similarity=0.220  Sum_probs=171.0

Q ss_pred             CCCCCceEEEeeCCCeEEEEec-CCEEEEEEcCCCeeEEeecc---------------CCCcccCeEECCCCC-EEEEeC
Q 018474           50 CVNHPEDVSVVVSKGALYTATR-DGWVKYFILHNETLVNWKHI---------------DSQSLLGLTTTKDGG-VILCDN  112 (355)
Q Consensus        50 ~~~~p~~i~~d~~~g~l~~~~~-~g~i~~~~~~~g~~~~~~~~---------------~~~p~~gl~~d~~g~-L~v~~~  112 (355)
                      .+..|..+++|+.++.+|++.. +++|.++|. +|+.......               .+.|. |+++|++|+ |||++.
T Consensus       566 ~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~-~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~-GIavd~~gn~LYVaDt  643 (1057)
T PLN02919        566 PLKFPGKLAIDLLNNRLFISDSNHNRIVVTDL-DGNFIVQIGSTGEEGLRDGSFEDATFNRPQ-GLAYNAKKNLLYVADT  643 (1057)
T ss_pred             cCCCCceEEEECCCCeEEEEECCCCeEEEEeC-CCCEEEEEccCCCcCCCCCchhccccCCCc-EEEEeCCCCEEEEEeC
Confidence            4688999999966788998765 688999998 4544322211               13589 999998765 899997


Q ss_pred             CCc-EEEEcC-CC-eEEEcCC-----------------cCCcccEEEcc-CCcEEEEeCCCCCCCccccccccccCCCCe
Q 018474          113 EKG-LLKVTE-EG-VEAIVPD-----------------ASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQ  171 (355)
Q Consensus       113 ~~g-l~~~~~-~g-~~~~~~~-----------------~~~~~~l~~d~-dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~  171 (355)
                      .++ +.+++. ++ ++++...                 .+.|.++++++ +|.+|+++..                 ...
T Consensus       644 ~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~-----------------~~~  706 (1057)
T PLN02919        644 ENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG-----------------QHQ  706 (1057)
T ss_pred             CCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC-----------------CCe
Confidence            654 666774 56 6665321                 25789999999 6799999876                 456


Q ss_pred             EEEEeCCCCeEEEee---------------ccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcce---------
Q 018474          172 LRKYDPKLKETTVLH---------------EGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGIL---------  227 (355)
Q Consensus       172 l~~~dp~~~~~~~~~---------------~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~---------  227 (355)
                      +++||+.++....+.               ..+..|+||++++|++.+|++++..++|++|++++......         
T Consensus       707 I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~  786 (1057)
T PLN02919        707 IWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSD  786 (1057)
T ss_pred             EEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCc
Confidence            777777666554432               12457999999999999999999999999999864321000         


Q ss_pred             --eEecc-------cCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEE
Q 018474          228 --DAFIE-------NLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKV  298 (355)
Q Consensus       228 --~~~~~-------~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  298 (355)
                        ..+.+       ..-..|.++++|++|++||++...                                    +.|.+|
T Consensus       787 ~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N------------------------------------~rIrvi  830 (1057)
T PLN02919        787 NLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN------------------------------------HKIKKL  830 (1057)
T ss_pred             ccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC------------------------------------CEEEEE
Confidence              00000       001248899999999999999652                                    479999


Q ss_pred             eCCCCeEEEEEECC------CC----CcccceeEEEEe-CCEEEEeecCCCeEEEeeCCCCCC
Q 018474          299 DGNDGKIIRDFNDP------DA----TYISFVTSAAEF-DGNLYLASLQSNFIGILPLDGPEP  350 (355)
Q Consensus       299 ~~~~g~~~~~~~~~------~g----~~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~~~~~~~  350 (355)
                      |+ ++..+..+...      +|    ..++.+.+++.+ +|+|||++..++.|.++++.+...
T Consensus       831 D~-~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        831 DP-ATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             EC-CCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            98 54443333221      11    123456667665 589999999999999999987543

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=99.78  E-value=1.1e-16  Score=136.44  Aligned_cols=242  Identities=9%  Similarity=0.075  Sum_probs=178.2

Q ss_pred             CceEecCCCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCC----CcccCeEECCCCCEEEEeCCCcEE
Q 018474           42 GLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDS----QSLLGLTTTKDGGVILCDNEKGLL  117 (355)
Q Consensus        42 ~~~~~~~~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~----~p~~gl~~d~~g~L~v~~~~~gl~  117 (355)
                      +.+++++|....|..|+.+ .+|..|+......|.|+++++.++++|.....    ... ...+|++|+||++.. .|.+
T Consensus        94 ev~~ypLg~Ga~Phgiv~g-pdg~~Witd~~~aI~R~dpkt~evt~f~lp~~~a~~nle-t~vfD~~G~lWFt~q-~G~y  170 (353)
T COG4257          94 EVETYPLGSGASPHGIVVG-PDGSAWITDTGLAIGRLDPKTLEVTRFPLPLEHADANLE-TAVFDPWGNLWFTGQ-IGAY  170 (353)
T ss_pred             ceEEEecCCCCCCceEEEC-CCCCeeEecCcceeEEecCcccceEEeecccccCCCccc-ceeeCCCccEEEeec-cccc
Confidence            3467888888999999999 56677877665589999999999998864332    344 678999999999874 3544


Q ss_pred             -EEcC-CC-eEEEcCCc-CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeec--c-cc
Q 018474          118 -KVTE-EG-VEAIVPDA-SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE--G-FY  190 (355)
Q Consensus       118 -~~~~-~g-~~~~~~~~-~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~--~-~~  190 (355)
                       ++|+ .+ ++++.... ..|++|++.+||.+|++.-.                 ...|-++||.++..+++..  . -.
T Consensus       171 GrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyasla-----------------gnaiaridp~~~~aev~p~P~~~~~  233 (353)
T COG4257         171 GRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLA-----------------GNAIARIDPFAGHAEVVPQPNALKA  233 (353)
T ss_pred             eecCcccCceeeeccCCCCCCcceEECCCCcEEEEecc-----------------ccceEEcccccCCcceecCCCcccc
Confidence             7776 56 88876554 78999999999999998643                 4468899998885554432  1 12


Q ss_pred             ccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEe-cccCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchh
Q 018474          191 FANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAF-IENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCRE  269 (355)
Q Consensus       191 ~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~  269 (355)
                      ....+-.++.|+ +|+++.....+++|+.+...   ...+ .....-.|+.+.+|+.|++|.+....             
T Consensus       234 gsRriwsdpig~-~wittwg~g~l~rfdPs~~s---W~eypLPgs~arpys~rVD~~grVW~sea~a-------------  296 (353)
T COG4257         234 GSRRIWSDPIGR-AWITTWGTGSLHRFDPSVTS---WIEYPLPGSKARPYSMRVDRHGRVWLSEADA-------------  296 (353)
T ss_pred             cccccccCccCc-EEEeccCCceeeEeCccccc---ceeeeCCCCCCCcceeeeccCCcEEeecccc-------------
Confidence            234566788887 99999999999999985432   2222 11222357889999999999988652             


Q ss_pred             HHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeCCEEEEeecCCCeEEEeeCC
Q 018474          270 KWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLD  346 (355)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~  346 (355)
                                             +.|.+||| ....+..|..+.-  ......+--..|++|++...-+.+.+++..
T Consensus       297 -----------------------gai~rfdp-eta~ftv~p~pr~--n~gn~ql~gr~ge~W~~e~gvd~lv~~r~~  347 (353)
T COG4257         297 -----------------------GAIGRFDP-ETARFTVLPIPRP--NSGNIQLDGRPGELWFTEAGVDALVTTRIG  347 (353)
T ss_pred             -----------------------CceeecCc-ccceEEEecCCCC--CCCceeccCCCCceeecccCcceeEEEEee
Confidence                                   57999999 8888888877543  122222233459999999999999988754

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.70  E-value=1.7e-14  Score=120.39  Aligned_cols=232  Identities=17%  Similarity=0.224  Sum_probs=156.5

Q ss_pred             CCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCC--CEEEEeCCCcEEEEcCCC----eE
Q 018474           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDG--GVILCDNEKGLLKVTEEG----VE  125 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g--~L~v~~~~~gl~~~~~~g----~~  125 (355)
                      .+|.....  .+..+|+....|.|.|+|..+.+..+.. ..+.|..|..+--.|  ..+++..+.....++-+|    ..
T Consensus        18 Egp~w~~~--~~sLl~VDi~ag~v~r~D~~qn~v~ra~-ie~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~   94 (310)
T KOG4499|consen   18 EGPHWDVE--RQSLLYVDIEAGEVHRYDIEQNKVYRAK-IEGPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAK   94 (310)
T ss_pred             CCCceEEe--cceEEEEEeccCceehhhhhhhheEEEE-EecCcceeEEEEecCCCceEEEeecceEEEEEcccccceee
Confidence            34444333  3567889999999999998777665532 222222144332122  355555443333332122    22


Q ss_pred             EEcC-----C---cCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEE
Q 018474          126 AIVP-----D---ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIAL  197 (355)
Q Consensus       126 ~~~~-----~---~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~  197 (355)
                      ++..     .   -+..|+--+||+|+.|.+.+..       ....+|. ..|.+|++-+ .++++.+...+..+||+++
T Consensus        95 v~~t~~ev~~d~kknR~NDgkvdP~Gryy~GtMad-------~~~~le~-~~g~Ly~~~~-~h~v~~i~~~v~IsNgl~W  165 (310)
T KOG4499|consen   95 VYRTLFEVQPDRKKNRLNDGKVDPDGRYYGGTMAD-------FGDDLEP-IGGELYSWLA-GHQVELIWNCVGISNGLAW  165 (310)
T ss_pred             eeeeccccCchHHhcccccCccCCCCceeeeeecc-------ccccccc-cccEEEEecc-CCCceeeehhccCCccccc
Confidence            2221     1   1778899999999999887651       1122222 2456777766 6788888888999999999


Q ss_pred             eCCCCEEEEEeCCCCeEEEEE--eCCCCCcceeEecc--c----CCCCcCceEECCCCCEEEEeecCCchhhHhhhcchh
Q 018474          198 SKNEDFVVVCESWKFRCRRYW--LKGDRAGILDAFIE--N----LPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCRE  269 (355)
Q Consensus       198 ~~dg~~l~v~~~~~~~i~~~~--~~~~~~~~~~~~~~--~----~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~  269 (355)
                      +.|.+..|++++.+..|-.|+  ..+....+++.+.+  .    .+-.|||+++|.+|+|||+++.+             
T Consensus       166 d~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng-------------  232 (310)
T KOG4499|consen  166 DSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNG-------------  232 (310)
T ss_pred             cccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecC-------------
Confidence            999999999999999995555  55544555544433  1    22479999999999999999874             


Q ss_pred             HHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeC---CEEEEeec
Q 018474          270 KWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFD---GNLYLASL  335 (355)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~---g~L~v~~~  335 (355)
                                             +.|+++||.+|+++..+.-|.    ..++++++.+   +-||+++.
T Consensus       233 -----------------------~~V~~~dp~tGK~L~eiklPt----~qitsccFgGkn~d~~yvT~a  274 (310)
T KOG4499|consen  233 -----------------------GTVQKVDPTTGKILLEIKLPT----PQITSCCFGGKNLDILYVTTA  274 (310)
T ss_pred             -----------------------cEEEEECCCCCcEEEEEEcCC----CceEEEEecCCCccEEEEEeh
Confidence                                   579999999999999998774    3688888875   56787764

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.64  E-value=2.7e-13  Score=126.11  Aligned_cols=259  Identities=18%  Similarity=0.258  Sum_probs=164.0

Q ss_pred             CCcCccCceEecCCCCCCCceEEEeeCCCeEEEEec----CCEEEEE--EcCCCeeEEee---ccCCCcccCeEECCCCC
Q 018474           36 ESSSMKGLTKLGEGCVNHPEDVSVVVSKGALYTATR----DGWVKYF--ILHNETLVNWK---HIDSQSLLGLTTTKDGG  106 (355)
Q Consensus        36 ~~~~l~~~~~~~~~~~~~p~~i~~d~~~g~l~~~~~----~g~i~~~--~~~~g~~~~~~---~~~~~p~~gl~~d~~g~  106 (355)
                      .++.|+....+..  ...|..++++++++.||+..+    .|.|..+  +.++|+++...   ..+..|. .+++|++|+
T Consensus        23 ~~g~l~~~~~~~~--~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~-~i~~~~~g~   99 (345)
T PF10282_consen   23 ETGTLTLVQTVAE--GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPC-HIAVDPDGR   99 (345)
T ss_dssp             TTTEEEEEEEEEE--SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEE-EEEECTTSS
T ss_pred             CCCCceEeeeecC--CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcE-EEEEecCCC
Confidence            3445555444443  588999999988999999876    4677554  55447766543   2456788 899998886


Q ss_pred             -EEEEeCCCc-E--EEEcCCC-eEEE---c-C----------CcCCcccEEEccCC-cEEEEeCCCCCCCcccccccccc
Q 018474          107 -VILCDNEKG-L--LKVTEEG-VEAI---V-P----------DASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEG  166 (355)
Q Consensus       107 -L~v~~~~~g-l--~~~~~~g-~~~~---~-~----------~~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~  166 (355)
                       ||++....| +  +.++.+| +...   . .          ....|+.+.++|+| .+|++|..               
T Consensus       100 ~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG---------------  164 (345)
T PF10282_consen  100 FLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG---------------  164 (345)
T ss_dssp             EEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT---------------
T ss_pred             EEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC---------------
Confidence             788887655 3  3344456 3221   1 0          11678899999998 58888865               


Q ss_pred             CCCCeEEE--EeCCCCeEEEe----eccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCC--CCCcceeEecccCC---
Q 018474          167 KPYGQLRK--YDPKLKETTVL----HEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKG--DRAGILDAFIENLP---  235 (355)
Q Consensus       167 ~~~g~l~~--~dp~~~~~~~~----~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~---  235 (355)
                        ..+|+.  ++..++++...    ......|..++++||++.+|+.+...+.|.+|+++.  ......+... .++   
T Consensus       165 --~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~-~~~~~~  241 (345)
T PF10282_consen  165 --ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTIS-TLPEGF  241 (345)
T ss_dssp             --TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEE-SCETTS
T ss_pred             --CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEee-eccccc
Confidence              334554  45544445432    234567899999999999999999999999999862  2222222221 121   


Q ss_pred             -C--CcCceEECCCCC-EEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEEC
Q 018474          236 -G--GPDNINLAPDGS-FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFND  311 (355)
Q Consensus       236 -g--~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~  311 (355)
                       +  .+.++++++||+ +||+....                                  ..-.++.+|+++|+....-..
T Consensus       242 ~~~~~~~~i~ispdg~~lyvsnr~~----------------------------------~sI~vf~~d~~~g~l~~~~~~  287 (345)
T PF10282_consen  242 TGENAPAEIAISPDGRFLYVSNRGS----------------------------------NSISVFDLDPATGTLTLVQTV  287 (345)
T ss_dssp             CSSSSEEEEEE-TTSSEEEEEECTT----------------------------------TEEEEEEECTTTTTEEEEEEE
T ss_pred             cccCCceeEEEecCCCEEEEEeccC----------------------------------CEEEEEEEecCCCceEEEEEE
Confidence             1  466789999997 57766441                                  112467776646664332222


Q ss_pred             C-CCCcccceeEEEE--eCCEEEEeecCCCeEEEeeCCCCCCCc
Q 018474          312 P-DATYISFVTSAAE--FDGNLYLASLQSNFIGILPLDGPEPQL  352 (355)
Q Consensus       312 ~-~g~~~~~~~~~~~--~~g~L~v~~~~~~~i~~~~~~~~~~~~  352 (355)
                      + .|.   .+..+..  ++..||+++..++.|.+++++...-.|
T Consensus       288 ~~~G~---~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l  328 (345)
T PF10282_consen  288 PTGGK---FPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKL  328 (345)
T ss_dssp             EESSS---SEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred             eCCCC---CccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcE
Confidence            2 232   3444554  568899999999999999987655443

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.63  E-value=2.2e-14  Score=127.12  Aligned_cols=178  Identities=19%  Similarity=0.335  Sum_probs=129.8

Q ss_pred             CCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeecc------CCCcccCeEECCCCCEEEEeCCC---------cE
Q 018474           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI------DSQSLLGLTTTKDGGVILCDNEK---------GL  116 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~------~~~p~~gl~~d~~g~L~v~~~~~---------gl  116 (355)
                      ..|.+++++..++.+|++...+ +..+|+.+++.+.+...      ..+|+ .+++|++|+||+++...         ++
T Consensus        40 ~~~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~N-D~~vd~~G~ly~t~~~~~~~~~~~~g~v  117 (246)
T PF08450_consen   40 PGPNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPN-DVAVDPDGNLYVTDSGGGGASGIDPGSV  117 (246)
T ss_dssp             SSEEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEE-EEEE-TTS-EEEEEECCBCTTCGGSEEE
T ss_pred             CCCceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCc-eEEEcCCCCEEEEecCCCccccccccce
Confidence            3499999996679999998766 56669989987766543      24588 99999999999998642         48


Q ss_pred             EEEcCCC-eEEEcCCcCCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCC--CCeE---EEee--c
Q 018474          117 LKVTEEG-VEAIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPK--LKET---TVLH--E  187 (355)
Q Consensus       117 ~~~~~~g-~~~~~~~~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~--~~~~---~~~~--~  187 (355)
                      ++++.++ ++.+......||+|++++|| .||++++.                 .+++++|+.+  ++++   +++.  .
T Consensus       118 ~~~~~~~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~-----------------~~~i~~~~~~~~~~~~~~~~~~~~~~  180 (246)
T PF08450_consen  118 YRIDPDGKVTVVADGLGFPNGIAFSPDGKTLYVADSF-----------------NGRIWRFDLDADGGELSNRRVFIDFP  180 (246)
T ss_dssp             EEEETTSEEEEEEEEESSEEEEEEETTSSEEEEEETT-----------------TTEEEEEEEETTTCCEEEEEEEEE-S
T ss_pred             EEECCCCeEEEEecCcccccceEECCcchheeecccc-----------------cceeEEEeccccccceeeeeeEEEcC
Confidence            9998667 77666666899999999999 59999876                 5678888764  3322   2232  1


Q ss_pred             c-ccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCC-CCcCceEEC-CC-CCEEEEee
Q 018474          188 G-FYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLP-GGPDNINLA-PD-GSFWIGLI  254 (355)
Q Consensus       188 ~-~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-g~p~~i~~d-~~-G~lwv~~~  254 (355)
                      . ...|.|++++.+|+ +|++....++|++|+.+|......+     .| ..|.++++. ++ +.|||++.
T Consensus       181 ~~~g~pDG~~vD~~G~-l~va~~~~~~I~~~~p~G~~~~~i~-----~p~~~~t~~~fgg~~~~~L~vTta  245 (246)
T PF08450_consen  181 GGPGYPDGLAVDSDGN-LWVADWGGGRIVVFDPDGKLLREIE-----LPVPRPTNCAFGGPDGKTLYVTTA  245 (246)
T ss_dssp             SSSCEEEEEEEBTTS--EEEEEETTTEEEEEETTSCEEEEEE------SSSSEEEEEEESTTSSEEEEEEB
T ss_pred             CCCcCCCcceEcCCCC-EEEEEcCCCEEEEECCCccEEEEEc-----CCCCCEEEEEEECCCCCEEEEEeC
Confidence            2 23599999999997 9999988999999998764332222     22 368999983 33 56999874

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.63  E-value=1.1e-12  Score=116.20  Aligned_cols=262  Identities=16%  Similarity=0.174  Sum_probs=175.7

Q ss_pred             CCcCccCceEecCCCCCCCceEEEeeCCCeEEEEecC---CEE--EEEEcCCCeeEEeec---cCCCcccCeEECCCCC-
Q 018474           36 ESSSMKGLTKLGEGCVNHPEDVSVVVSKGALYTATRD---GWV--KYFILHNETLVNWKH---IDSQSLLGLTTTKDGG-  106 (355)
Q Consensus        36 ~~~~l~~~~~~~~~~~~~p~~i~~d~~~g~l~~~~~~---g~i--~~~~~~~g~~~~~~~---~~~~p~~gl~~d~~g~-  106 (355)
                      ..+.++..+.+..  ...|..|+++++.+.||++...   |+|  +++|+.+|+++....   .+..|. -+++|++|+ 
T Consensus        26 ~~g~l~~~~~v~~--~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~-yvsvd~~g~~  102 (346)
T COG2706          26 KTGELSLLQLVAE--LGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPC-YVSVDEDGRF  102 (346)
T ss_pred             cccccchhhhccc--cCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCe-EEEECCCCCE
Confidence            3455555566654  5899999999878899997654   555  677887798876643   234557 899999997 


Q ss_pred             EEEEeCCCcEEEEc---CCC-eEEE----cCCc---------CCcccEEEccCC-cEEEEeCCCCCCCccccccccccCC
Q 018474          107 VILCDNEKGLLKVT---EEG-VEAI----VPDA---------SFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKP  168 (355)
Q Consensus       107 L~v~~~~~gl~~~~---~~g-~~~~----~~~~---------~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~  168 (355)
                      |+++....|.+.+.   .+| +...    ....         ..+....++|+| .|+++|-.                 
T Consensus       103 vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG-----------------  165 (346)
T COG2706         103 VFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG-----------------  165 (346)
T ss_pred             EEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC-----------------
Confidence            67777776755554   356 3221    1110         336667899999 56666654                 


Q ss_pred             CCeEEEEeCCCCeEEEee----ccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCC--CCcceeEecccCC-CCc---
Q 018474          169 YGQLRKYDPKLKETTVLH----EGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGD--RAGILDAFIENLP-GGP---  238 (355)
Q Consensus       169 ~g~l~~~dp~~~~~~~~~----~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~-g~p---  238 (355)
                      ..+++.|+.+.|+++...    .....|.-|+|+|+++..|+.....+.|.++..++.  +....+... .+| .+.   
T Consensus       166 ~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~-tlP~dF~g~~  244 (346)
T COG2706         166 TDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTID-TLPEDFTGTN  244 (346)
T ss_pred             CceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeec-cCccccCCCC
Confidence            456777766666665432    345678899999999999999999999999988763  222332221 222 111   


Q ss_pred             --CceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEE--EECCCC
Q 018474          239 --DNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRD--FNDPDA  314 (355)
Q Consensus       239 --~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~--~~~~~g  314 (355)
                        ..|.++++|++..+++.+.+.                                 =.++++|+ ++..++.  +....|
T Consensus       245 ~~aaIhis~dGrFLYasNRg~ds---------------------------------I~~f~V~~-~~g~L~~~~~~~teg  290 (346)
T COG2706         245 WAAAIHISPDGRFLYASNRGHDS---------------------------------IAVFSVDP-DGGKLELVGITPTEG  290 (346)
T ss_pred             ceeEEEECCCCCEEEEecCCCCe---------------------------------EEEEEEcC-CCCEEEEEEEeccCC
Confidence              126789999987777664221                                 25888999 5443333  334445


Q ss_pred             CcccceeEEEEeCCEEEEeecCCCeEEEeeCCCCCCCcC
Q 018474          315 TYISFVTSAAEFDGNLYLASLQSNFIGILPLDGPEPQLA  353 (355)
Q Consensus       315 ~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~~~~~~~~  353 (355)
                      . ++.-..+..+++.|++.+-.++.|.+|+.+..+-.|.
T Consensus       291 ~-~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~  328 (346)
T COG2706         291 Q-FPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLT  328 (346)
T ss_pred             c-CCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEE
Confidence            3 4444445566788999999999999999988876654

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.60  E-value=3.9e-13  Score=140.39  Aligned_cols=186  Identities=16%  Similarity=0.228  Sum_probs=133.3

Q ss_pred             CCCCceEEEeeCCCeEEEEec-CCEEEEEEcCCCeeEEeecc-----------------CCCcccCeEECC-CCCEEEEe
Q 018474           51 VNHPEDVSVVVSKGALYTATR-DGWVKYFILHNETLVNWKHI-----------------DSQSLLGLTTTK-DGGVILCD  111 (355)
Q Consensus        51 ~~~p~~i~~d~~~g~l~~~~~-~g~i~~~~~~~g~~~~~~~~-----------------~~~p~~gl~~d~-~g~L~v~~  111 (355)
                      +..|.+|+++++++.||++.. ++.|.++|..++....+...                 .+.|. ++++|+ +|+|||++
T Consensus       623 f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~-gVa~dp~~g~LyVad  701 (1057)
T PLN02919        623 FNRPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPW-DVCFEPVNEKVYIAM  701 (1057)
T ss_pred             cCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCe-EEEEecCCCeEEEEE
Confidence            567999999966777998765 67889999888876655321                 23588 999998 78899998


Q ss_pred             CCC-cEEEEcC-CC-eEEEcCC---------------cCCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeE
Q 018474          112 NEK-GLLKVTE-EG-VEAIVPD---------------ASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQL  172 (355)
Q Consensus       112 ~~~-gl~~~~~-~g-~~~~~~~---------------~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l  172 (355)
                      ..+ .+++++. ++ +..+...               ...|++++++++|. ||++|..                 .++|
T Consensus       702 ~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~-----------------n~~I  764 (1057)
T PLN02919        702 AGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE-----------------SSSI  764 (1057)
T ss_pred             CCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC-----------------CCeE
Confidence            764 4777774 56 5443211               15789999999985 9999875                 4578


Q ss_pred             EEEeCCCCeEEEeec----------------------cccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeE-
Q 018474          173 RKYDPKLKETTVLHE----------------------GFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDA-  229 (355)
Q Consensus       173 ~~~dp~~~~~~~~~~----------------------~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~-  229 (355)
                      .+||++++....+..                      .+..|.|+++++||+ +||+++..++|.+|+.++......-. 
T Consensus       765 rv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg~v~tiaG~  843 (1057)
T PLN02919        765 RALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATKRVTTLAGT  843 (1057)
T ss_pred             EEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCCeEEEEecc
Confidence            888877665443221                      134689999999998 99999999999999986532211100 


Q ss_pred             ----ecc-----cCCCCcCceEECCCCCEEEEeec
Q 018474          230 ----FIE-----NLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       230 ----~~~-----~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                          +.+     ..-..|.++++|++|++||++..
T Consensus       844 G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~  878 (1057)
T PLN02919        844 GKAGFKDGKALKAQLSEPAGLALGENGRLFVADTN  878 (1057)
T ss_pred             CCcCCCCCcccccccCCceEEEEeCCCCEEEEECC
Confidence                000     00125889999999999999865

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.58  E-value=5.3e-12  Score=116.80  Aligned_cols=255  Identities=13%  Similarity=0.144  Sum_probs=157.8

Q ss_pred             CcCccCceEecCCCCCCCceEEEeeCCCeEEEEec-CCEEEEEEcC-CCeeEEee--ccCCCcccCeEECCCCC-EEEEe
Q 018474           37 SSSMKGLTKLGEGCVNHPEDVSVVVSKGALYTATR-DGWVKYFILH-NETLVNWK--HIDSQSLLGLTTTKDGG-VILCD  111 (355)
Q Consensus        37 ~~~l~~~~~~~~~~~~~p~~i~~d~~~g~l~~~~~-~g~i~~~~~~-~g~~~~~~--~~~~~p~~gl~~d~~g~-L~v~~  111 (355)
                      ++.|.....+..+  ..|..+++++++..||++.. ++.|..++.. +|+++...  ...+.|. +++++++|+ ||++.
T Consensus        22 ~g~l~~~~~~~~~--~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~-~i~~~~~g~~l~v~~   98 (330)
T PRK11028         22 EGALTLLQVVDVP--GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT-HISTDHQGRFLFSAS   98 (330)
T ss_pred             CCceeeeeEEecC--CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce-EEEECCCCCEEEEEE
Confidence            3455555666543  67999999987788999865 6778666653 55554332  2345688 999999987 77776


Q ss_pred             CCCc-EEEEc--CCC-e-EEEc--CCcCCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCC-CeE
Q 018474          112 NEKG-LLKVT--EEG-V-EAIV--PDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKL-KET  182 (355)
Q Consensus       112 ~~~g-l~~~~--~~g-~-~~~~--~~~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~-~~~  182 (355)
                      ...+ +..++  .+| . +.+.  .....|.+++++++| .+|+++..                 .+.+..||.++ +.+
T Consensus        99 ~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~-----------------~~~v~v~d~~~~g~l  161 (330)
T PRK11028         99 YNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLK-----------------EDRIRLFTLSDDGHL  161 (330)
T ss_pred             cCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCC-----------------CCEEEEEEECCCCcc
Confidence            5444 44554  344 2 2221  112568889999998 57777654                 45676676544 333


Q ss_pred             EE------eeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCC--CCcceeEec---cc--CCCCcCceEECCCCC-
Q 018474          183 TV------LHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGD--RAGILDAFI---EN--LPGGPDNINLAPDGS-  248 (355)
Q Consensus       183 ~~------~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~--~~~~~~~~~---~~--~~g~p~~i~~d~~G~-  248 (355)
                      ..      -......|.+++++|||+++|+++...+.|..|+++..  .....+.+.   ..  .+..+..+.++++|+ 
T Consensus       162 ~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~  241 (330)
T PRK11028        162 VAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRH  241 (330)
T ss_pred             cccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCE
Confidence            21      11224568999999999999999988899999998632  221122111   00  112334588899997 


Q ss_pred             EEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEEC-CCCCcccceeEEE--E
Q 018474          249 FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFND-PDATYISFVTSAA--E  325 (355)
Q Consensus       249 lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~-~~g~~~~~~~~~~--~  325 (355)
                      +|+++...                                  ..-.++.+++ ++........ +.|.   .+..+.  .
T Consensus       242 lyv~~~~~----------------------------------~~I~v~~i~~-~~~~~~~~~~~~~~~---~p~~~~~~~  283 (330)
T PRK11028        242 LYACDRTA----------------------------------SLISVFSVSE-DGSVLSFEGHQPTET---QPRGFNIDH  283 (330)
T ss_pred             EEEecCCC----------------------------------CeEEEEEEeC-CCCeEEEeEEEeccc---cCCceEECC
Confidence            66664321                                  1124667777 5543332221 1221   122233  4


Q ss_pred             eCCEEEEeecCCCeEEEeeCCCCC
Q 018474          326 FDGNLYLASLQSNFIGILPLDGPE  349 (355)
Q Consensus       326 ~~g~L~v~~~~~~~i~~~~~~~~~  349 (355)
                      ++.+||+++..++.|.+++++...
T Consensus       284 dg~~l~va~~~~~~v~v~~~~~~~  307 (330)
T PRK11028        284 SGKYLIAAGQKSHHISVYEIDGET  307 (330)
T ss_pred             CCCEEEEEEccCCcEEEEEEcCCC
Confidence            568899999889999999987554

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.52  E-value=1.2e-11  Score=115.11  Aligned_cols=199  Identities=19%  Similarity=0.226  Sum_probs=130.0

Q ss_pred             cCccCceEecCCCCCCCceEEEeeCCCeEEEEec-CCEEEEEEcCC-CeeEEee--------------ccCCCcccCeEE
Q 018474           38 SSMKGLTKLGEGCVNHPEDVSVVVSKGALYTATR-DGWVKYFILHN-ETLVNWK--------------HIDSQSLLGLTT  101 (355)
Q Consensus        38 ~~l~~~~~~~~~~~~~p~~i~~d~~~g~l~~~~~-~g~i~~~~~~~-g~~~~~~--------------~~~~~p~~gl~~  101 (355)
                      +.|+....+... ...|..++++++++.||++.+ +|.+..++..+ |++....              ....+|+ .+.+
T Consensus        74 g~L~~~~~~~~~-g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H-~v~~  151 (345)
T PF10282_consen   74 GTLTLLNSVPSG-GSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPH-QVVF  151 (345)
T ss_dssp             TEEEEEEEEEES-SSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEE-EEEE
T ss_pred             ceeEEeeeeccC-CCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccce-eEEE
Confidence            455555555532 478999999988899999987 68887777643 6543321              1235688 8999


Q ss_pred             CCCCC-EEEEeCC-CcEEEEc--C-CC-eEE---Ec-CCcCCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCC
Q 018474          102 TKDGG-VILCDNE-KGLLKVT--E-EG-VEA---IV-PDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYG  170 (355)
Q Consensus       102 d~~g~-L~v~~~~-~gl~~~~--~-~g-~~~---~~-~~~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g  170 (355)
                      +++|+ +||++.+ +.++.++  . .+ ++.   +. .....|++++++++| .+|+.+..               ...-
T Consensus       152 ~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~---------------s~~v  216 (345)
T PF10282_consen  152 SPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNEL---------------SNTV  216 (345)
T ss_dssp             -TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETT---------------TTEE
T ss_pred             CCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCC---------------CCcE
Confidence            99986 8888866 3455555  3 33 433   21 122889999999998 68888654               2233


Q ss_pred             eEEEEeCCCCeEEEeec------c---ccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCC--CCcceeEecccCCCCcC
Q 018474          171 QLRKYDPKLKETTVLHE------G---FYFANGIALSKNEDFVVVCESWKFRCRRYWLKGD--RAGILDAFIENLPGGPD  239 (355)
Q Consensus       171 ~l~~~dp~~~~~~~~~~------~---~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~g~p~  239 (355)
                      .++.+++.+++++....      +   ...|.+|+++|||++||+++...+.|..|+++..  .+.....+ ......|+
T Consensus       217 ~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~-~~~G~~Pr  295 (345)
T PF10282_consen  217 SVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTV-PTGGKFPR  295 (345)
T ss_dssp             EEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEE-EESSSSEE
T ss_pred             EEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEE-eCCCCCcc
Confidence            46667766776655421      1   1257789999999999999999999999999532  23222222 12234699


Q ss_pred             ceEECCCCC-EEEEee
Q 018474          240 NINLAPDGS-FWIGLI  254 (355)
Q Consensus       240 ~i~~d~~G~-lwv~~~  254 (355)
                      ++.+|++|+ +||+..
T Consensus       296 ~~~~s~~g~~l~Va~~  311 (345)
T PF10282_consen  296 HFAFSPDGRYLYVANQ  311 (345)
T ss_dssp             EEEE-TTSSEEEEEET
T ss_pred             EEEEeCCCCEEEEEec
Confidence            999999998 555553

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.48  E-value=5.2e-11  Score=105.63  Aligned_cols=224  Identities=17%  Similarity=0.220  Sum_probs=148.6

Q ss_pred             CCcCccCceEecCCCCCCCceEEEeeCCCeEEEEecC-CEEEEEEc-CCCeeEEe----eccC---------CCcccCeE
Q 018474           36 ESSSMKGLTKLGEGCVNHPEDVSVVVSKGALYTATRD-GWVKYFIL-HNETLVNW----KHID---------SQSLLGLT  100 (355)
Q Consensus        36 ~~~~l~~~~~~~~~~~~~p~~i~~d~~~g~l~~~~~~-g~i~~~~~-~~g~~~~~----~~~~---------~~p~~gl~  100 (355)
                      .+++|+.+.+.... ...|..+++|+++..+|++.+. |.|.++-. ++|.+...    .+.+         .+++ ...
T Consensus        74 ~~G~Lt~ln~~~~~-g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H-~a~  151 (346)
T COG2706          74 DDGRLTFLNRQTLP-GSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVH-SAN  151 (346)
T ss_pred             CCCeEEEeeccccC-CCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccc-eee
Confidence            44677777655543 3678999999777789999885 54444433 24543322    2222         1255 666


Q ss_pred             ECCCCC-EEEEeCC-CcEEEEc-CCC-eEEEc----CCcCCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCe
Q 018474          101 TTKDGG-VILCDNE-KGLLKVT-EEG-VEAIV----PDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQ  171 (355)
Q Consensus       101 ~d~~g~-L~v~~~~-~gl~~~~-~~g-~~~~~----~~~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~  171 (355)
                      ++++|+ |++.+-+ +.++.|+ .+| ++...    .+...|++|++.|+|. .|+...               ...+..
T Consensus       152 ~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~E---------------L~stV~  216 (346)
T COG2706         152 FTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNE---------------LNSTVD  216 (346)
T ss_pred             eCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEec---------------cCCEEE
Confidence            889996 5666654 4566666 466 43322    2228999999999994 666543               334556


Q ss_pred             EEEEeCCCCeEEEeeccc---------cccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecc--cCCC-CcC
Q 018474          172 LRKYDPKLKETTVLHEGF---------YFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIE--NLPG-GPD  239 (355)
Q Consensus       172 l~~~dp~~~~~~~~~~~~---------~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~g-~p~  239 (355)
                      ++.||+..++++.++.-.         .....|.+++||++||+++.+.+.|+.|.++... +..+ +..  ...| .|+
T Consensus       217 v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~-g~L~-~~~~~~teg~~PR  294 (346)
T COG2706         217 VLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDG-GKLE-LVGITPTEGQFPR  294 (346)
T ss_pred             EEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCC-CEEE-EEEEeccCCcCCc
Confidence            888999888888775322         2234588999999999999999999999985421 1221 221  2234 499


Q ss_pred             ceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEEC
Q 018474          240 NINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFND  311 (355)
Q Consensus       240 ~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~  311 (355)
                      .+.+++.|++.++.++.                                 +..-.|++.|+++|+.......
T Consensus       295 ~F~i~~~g~~Liaa~q~---------------------------------sd~i~vf~~d~~TG~L~~~~~~  333 (346)
T COG2706         295 DFNINPSGRFLIAANQK---------------------------------SDNITVFERDKETGRLTLLGRY  333 (346)
T ss_pred             cceeCCCCCEEEEEccC---------------------------------CCcEEEEEEcCCCceEEecccc
Confidence            99999999999998873                                 3334688889978887655543

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=99.37  E-value=5.9e-11  Score=111.26  Aligned_cols=165  Identities=20%  Similarity=0.211  Sum_probs=115.3

Q ss_pred             CCCCCCceEEEeeCCCeEEEEec------------CC-EEEEEEcCC--Ce---eEEeeccCCCcccCeEECCCCCEEEE
Q 018474           49 GCVNHPEDVSVVVSKGALYTATR------------DG-WVKYFILHN--ET---LVNWKHIDSQSLLGLTTTKDGGVILC  110 (355)
Q Consensus        49 ~~~~~p~~i~~d~~~g~l~~~~~------------~g-~i~~~~~~~--g~---~~~~~~~~~~p~~gl~~d~~g~L~v~  110 (355)
                      ..+..|..|++| ..|+||++..            .+ +|++++..+  |+   .+.+......|. ||++.++| |||+
T Consensus        11 p~~~~P~~ia~d-~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~-Gi~~~~~G-lyV~   87 (367)
T TIGR02604        11 PLLRNPIAVCFD-ERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVT-GLAVAVGG-VYVA   87 (367)
T ss_pred             CccCCCceeeEC-CCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCcc-ceeEecCC-EEEe
Confidence            357899999999 7888999852            23 898887643  43   456666566799 99999888 9998


Q ss_pred             eCCCcEEEEc-C--CC-----eEEEcCCc--------CCcccEEEccCCcEEEEeCCCC--CCCccccccccccCCCCeE
Q 018474          111 DNEKGLLKVT-E--EG-----VEAIVPDA--------SFTNDVIAASDGTLYFTVASTK--YTPTDFYKDMAEGKPYGQL  172 (355)
Q Consensus       111 ~~~~gl~~~~-~--~g-----~~~~~~~~--------~~~~~l~~d~dG~ly~~d~~~~--~~~~~~~~~~~~~~~~g~l  172 (355)
                      +. ..|+++. .  ++     .+.+....        ..++++++++||.||+++....  +..........+....+++
T Consensus        88 ~~-~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i  166 (367)
T TIGR02604        88 TP-PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGL  166 (367)
T ss_pred             CC-CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceE
Confidence            74 4688883 2  22     23333221        4488999999999999886421  1000000011111235789


Q ss_pred             EEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEE
Q 018474          173 RKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYW  218 (355)
Q Consensus       173 ~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~  218 (355)
                      ++++|++++++.+..++.+|+|++++++|+ +|+++.......++.
T Consensus       167 ~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~-l~~tdn~~~~~~~i~  211 (367)
T TIGR02604       167 FRYNPDGGKLRVVAHGFQNPYGHSVDSWGD-VFFCDNDDPPLCRVT  211 (367)
T ss_pred             EEEecCCCeEEEEecCcCCCccceECCCCC-EEEEccCCCceeEEc
Confidence            999999999999999999999999999998 788887555555443

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.33  E-value=2.7e-09  Score=98.76  Aligned_cols=183  Identities=11%  Similarity=0.088  Sum_probs=115.5

Q ss_pred             CCCceEEEeeCCCeEEEEec-CCEEEEEEcC-CCeeE-Ee--eccCCCcccCeEECCCCC-EEEEeCCCc-EEEEc--CC
Q 018474           52 NHPEDVSVVVSKGALYTATR-DGWVKYFILH-NETLV-NW--KHIDSQSLLGLTTTKDGG-VILCDNEKG-LLKVT--EE  122 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~-~g~i~~~~~~-~g~~~-~~--~~~~~~p~~gl~~d~~g~-L~v~~~~~g-l~~~~--~~  122 (355)
                      ..|..++++++++.+|++.. ++.|..++.. ++... ..  ......|+ +++++++|+ +|+++...+ +..++  ..
T Consensus        80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~-~~~~~p~g~~l~v~~~~~~~v~v~d~~~~  158 (330)
T PRK11028         80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCH-SANIDPDNRTLWVPCLKEDRIRLFTLSDD  158 (330)
T ss_pred             CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCccc-EeEeCCCCCEEEEeeCCCCEEEEEEECCC
Confidence            47999999988888998875 6788888774 33221 11  11224588 899999885 778876644 55555  23


Q ss_pred             C-eEE-----Ec-CCcCCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeE--EEEeCCCCeEEEeecc----
Q 018474          123 G-VEA-----IV-PDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQL--RKYDPKLKETTVLHEG----  188 (355)
Q Consensus       123 g-~~~-----~~-~~~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l--~~~dp~~~~~~~~~~~----  188 (355)
                      | ++.     .. .....|++++++++| .+|+++..                 .+.+  |.+++.+++++....-    
T Consensus       159 g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~-----------------~~~v~v~~~~~~~~~~~~~~~~~~~p  221 (330)
T PRK11028        159 GHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL-----------------NSSVDVWQLKDPHGEIECVQTLDMMP  221 (330)
T ss_pred             CcccccCCCceecCCCCCCceEEECCCCCEEEEEecC-----------------CCEEEEEEEeCCCCCEEEEEEEecCC
Confidence            4 321     11 112679999999998 57887653                 2344  4455444554433211    


Q ss_pred             -----ccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCC-CcceeEecccCCCCcCceEECCCCC-EEEEe
Q 018474          189 -----FYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDR-AGILDAFIENLPGGPDNINLAPDGS-FWIGL  253 (355)
Q Consensus       189 -----~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~  253 (355)
                           ...+.+++++||++++|+++...+.|..|+++... ..+..... .....|.++.++++|+ +|++.
T Consensus       222 ~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~-~~~~~p~~~~~~~dg~~l~va~  292 (330)
T PRK11028        222 ADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQ-PTETQPRGFNIDHSGKYLIAAG  292 (330)
T ss_pred             CcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEE-eccccCCceEECCCCCEEEEEE
Confidence                 12344689999999999998888899999885321 11111111 1123589999999996 55554

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=99.29  E-value=1.5e-10  Score=108.21  Aligned_cols=141  Identities=16%  Similarity=0.172  Sum_probs=96.5

Q ss_pred             CCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCC--CcccCeEECCCCCEEEEeCCCcEEEEcCCC--eEEEc
Q 018474           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDS--QSLLGLTTTKDGGVILCDNEKGLLKVTEEG--VEAIV  128 (355)
Q Consensus        53 ~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~--~p~~gl~~d~~g~L~v~~~~~gl~~~~~~g--~~~~~  128 (355)
                      .--.++.| ..|.+|+++.+| +++||..+++..+......  .++ .+..|..|+|||++. +|++.+++.|  ..-..
T Consensus       166 ~V~aLv~D-~~g~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~-al~~d~qg~LWVGTd-qGv~~~e~~G~~~sn~~  241 (671)
T COG3292         166 PVVALVFD-ANGRLWVGTPDG-LSYFDAGRGKALQLASPPLDKAIN-ALIADVQGRLWVGTD-QGVYLQEAEGWRASNWG  241 (671)
T ss_pred             cceeeeee-ccCcEEEecCCc-ceEEccccceEEEcCCCcchhhHH-HHHHHhcCcEEEEec-cceEEEchhhccccccC
Confidence            34567888 788999999888 9999999998876644322  356 788899999999995 5999998766  33322


Q ss_pred             CCc--CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEe----eccccccccEEEeCCCC
Q 018474          129 PDA--SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL----HEGFYFANGIALSKNED  202 (355)
Q Consensus       129 ~~~--~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~----~~~~~~pngi~~~~dg~  202 (355)
                      ...  ..+..+..|.+|.+|+++..                   ++.++......+...    ..+.+..|++..+.||.
T Consensus       242 ~~lp~~~I~ll~qD~qG~lWiGTen-------------------Gl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs  302 (671)
T COG3292         242 PMLPSGNILLLVQDAQGELWIGTEN-------------------GLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS  302 (671)
T ss_pred             CCCcchheeeeecccCCCEEEeecc-------------------cceeEecCCCCccccccccCCccccccceeeccCCC
Confidence            221  56777788899999998653                   355554333332211    12234457788888887


Q ss_pred             EEEEEeCCCCeEEEEEe
Q 018474          203 FVVVCESWKFRCRRYWL  219 (355)
Q Consensus       203 ~l~v~~~~~~~i~~~~~  219 (355)
                       +|+..  .+++++|..
T Consensus       303 -LWv~t--~~giv~~~~  316 (671)
T COG3292         303 -LWVGT--YGGIVRYLT  316 (671)
T ss_pred             -Eeeec--cCceEEEec
Confidence             77764  356777764

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.28  E-value=3.3e-08  Score=89.36  Aligned_cols=239  Identities=12%  Similarity=0.057  Sum_probs=148.3

Q ss_pred             CCCceEEEeeCCCeEEEE-ecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCC-CcEEEEcC-CC--eE
Q 018474           52 NHPEDVSVVVSKGALYTA-TRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNE-KGLLKVTE-EG--VE  125 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~-~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~-~gl~~~~~-~g--~~  125 (355)
                      ..|.+++++++++.+|++ ..++.|..+|..+++..........+. .++++++|+ +|++... +.+..++. ++  +.
T Consensus        31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~  109 (300)
T TIGR03866        31 QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPE-LFALHPNGKILYIANEDDNLVTVIDIETRKVLA  109 (300)
T ss_pred             CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCcc-EEEECCCCCEEEEEcCCCCeEEEEECCCCeEEe
Confidence            457889999766778765 457889999988877654333334567 788988887 6666543 34666673 44  33


Q ss_pred             EEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEE
Q 018474          126 AIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVV  205 (355)
Q Consensus       126 ~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~  205 (355)
                      .+... ..+.+++++++|.++++....                ...+..||.++++..........|..+++++|++.++
T Consensus       110 ~~~~~-~~~~~~~~~~dg~~l~~~~~~----------------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~  172 (300)
T TIGR03866       110 EIPVG-VEPEGMAVSPDGKIVVNTSET----------------TNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELW  172 (300)
T ss_pred             EeeCC-CCcceEEECCCCCEEEEEecC----------------CCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEE
Confidence            33322 457889999999776654320                1235567877665533222234578899999999888


Q ss_pred             EEeCCCCeEEEEEeCCCCC-cceeEeccc---CCCCcCceEECCCCCE-EEEeecCCchhhHhhhcchhHHHHHHhccch
Q 018474          206 VCESWKFRCRRYWLKGDRA-GILDAFIEN---LPGGPDNINLAPDGSF-WIGLIKMNQTGVRAIQKCREKWELLDAYPGL  280 (355)
Q Consensus       206 v~~~~~~~i~~~~~~~~~~-~~~~~~~~~---~~g~p~~i~~d~~G~l-wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (355)
                      ++....+.|..|+++..+. .....-...   ....|.++.++++|+. |++....                        
T Consensus       173 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~------------------------  228 (300)
T TIGR03866       173 VSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPA------------------------  228 (300)
T ss_pred             EEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCC------------------------
Confidence            8766678899999864321 111100000   1113567888999975 6655321                        


Q ss_pred             hhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEE--eCCEEEEeecCCCeEEEeeCCCCC
Q 018474          281 ISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAE--FDGNLYLASLQSNFIGILPLDGPE  349 (355)
Q Consensus       281 ~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~--~~g~L~v~~~~~~~i~~~~~~~~~  349 (355)
                                  ..+..+|.++++....+.. .+    .+..+..  ++..||+++..++.|.++++.+..
T Consensus       229 ------------~~i~v~d~~~~~~~~~~~~-~~----~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~  282 (300)
T TIGR03866       229 ------------NRVAVVDAKTYEVLDYLLV-GQ----RVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK  282 (300)
T ss_pred             ------------CeEEEEECCCCcEEEEEEe-CC----CcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence                        2477778756666554432 11    1223333  446677776667889998887654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=99.28  E-value=5.3e-10  Score=101.12  Aligned_cols=177  Identities=20%  Similarity=0.306  Sum_probs=118.0

Q ss_pred             CCceEEEeeCCCeEEEEecCCEEEEEEcCCCee-EEeecc-----CCCcccCeEECCCCCEEEEeCC-----C------c
Q 018474           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETL-VNWKHI-----DSQSLLGLTTTKDGGVILCDNE-----K------G  115 (355)
Q Consensus        53 ~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~-~~~~~~-----~~~p~~gl~~d~~g~L~v~~~~-----~------g  115 (355)
                      .+.....+ .++.|++....  +++++++++.. +.+...     .++++ -...|++|++|+++..     .      |
T Consensus        68 ~~~~~~~d-~~g~Lv~~~~g--~~~~~~~~~~~~t~~~~~~~~~~~~r~N-D~~v~pdG~~wfgt~~~~~~~~~~~~~~G  143 (307)
T COG3386          68 FSSGALID-AGGRLIACEHG--VRLLDPDTGGKITLLAEPEDGLPLNRPN-DGVVDPDGRIWFGDMGYFDLGKSEERPTG  143 (307)
T ss_pred             cccceeec-CCCeEEEEccc--cEEEeccCCceeEEeccccCCCCcCCCC-ceeEcCCCCEEEeCCCccccCccccCCcc
Confidence            35666666 66766665433  55666555555 444332     25788 8999999999999877     2      2


Q ss_pred             -EEEEcCCC-eEE-EcCCcCCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCC--CCeE----EEe
Q 018474          116 -LLKVTEEG-VEA-IVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPK--LKET----TVL  185 (355)
Q Consensus       116 -l~~~~~~g-~~~-~~~~~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~--~~~~----~~~  185 (355)
                       +|++++.| .+. +......+|+|+++||| ++|++|+.                 .+.+++|+-+  ++..    ..+
T Consensus       144 ~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~-----------------~~~i~r~~~d~~~g~~~~~~~~~  206 (307)
T COG3386         144 SLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTP-----------------ANRIHRYDLDPATGPIGGRRGFV  206 (307)
T ss_pred             eEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCC-----------------CCeEEEEecCcccCccCCcceEE
Confidence             99999766 444 44446899999999999 89999976                 4467666432  1211    111


Q ss_pred             e--ccccccccEEEeCCCCEEEEEeCC-CCeEEEEEeCCCCCcceeEecccCC-CCcCceEECC-C-CCEEEEeecC
Q 018474          186 H--EGFYFANGIALSKNEDFVVVCESW-KFRCRRYWLKGDRAGILDAFIENLP-GGPDNINLAP-D-GSFWIGLIKM  256 (355)
Q Consensus       186 ~--~~~~~pngi~~~~dg~~l~v~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~-g~p~~i~~d~-~-G~lwv~~~~~  256 (355)
                      .  .....|.|++++.||. +|++... ..+|.+|+.+|...+..+     +| ..|.+.++-. + ..|||++...
T Consensus       207 ~~~~~~G~PDG~~vDadG~-lw~~a~~~g~~v~~~~pdG~l~~~i~-----lP~~~~t~~~FgG~~~~~L~iTs~~~  277 (307)
T COG3386         207 DFDEEPGLPDGMAVDADGN-LWVAAVWGGGRVVRFNPDGKLLGEIK-----LPVKRPTNPAFGGPDLNTLYITSARS  277 (307)
T ss_pred             EccCCCCCCCceEEeCCCC-EEEecccCCceEEEECCCCcEEEEEE-----CCCCCCccceEeCCCcCEEEEEecCC
Confidence            1  2236799999999998 7744444 459999999865444432     34 5678887743 2 4688888663

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.22  E-value=6.9e-08  Score=87.23  Aligned_cols=224  Identities=13%  Similarity=0.110  Sum_probs=132.2

Q ss_pred             eEEE-EecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCCC-cEEEEc-CCC--eEEEcCCcCCcccEE
Q 018474           65 ALYT-ATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEK-GLLKVT-EEG--VEAIVPDASFTNDVI  138 (355)
Q Consensus        65 ~l~~-~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~~-gl~~~~-~~g--~~~~~~~~~~~~~l~  138 (355)
                      .+|+ +..++.|..+|..+++..........+. +++++++|+ +|++.... .+..++ .++  ...+... ..+..++
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~-~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~   79 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQRPR-GITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSG-PDPELFA   79 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEEECCCCCC-ceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCC-CCccEEE
Confidence            3554 4558899999998776544434445578 999999987 56665443 466677 355  3333322 3467788


Q ss_pred             EccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEE
Q 018474          139 AASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRY  217 (355)
Q Consensus       139 ~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~  217 (355)
                      ++++|+ +|++...                 .+.+..||..+++..........+.+++++||++.++++......+..+
T Consensus        80 ~~~~g~~l~~~~~~-----------------~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~  142 (300)
T TIGR03866        80 LHPNGKILYIANED-----------------DNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFI  142 (300)
T ss_pred             ECCCCCEEEEEcCC-----------------CCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEE
Confidence            999985 6666432                 3578889987665433233234578999999999777776544456666


Q ss_pred             EeCCCCCcceeEecccCCCCcCceEECCCCCEE-EEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEE
Q 018474          218 WLKGDRAGILDAFIENLPGGPDNINLAPDGSFW-IGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVV  296 (355)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lw-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  296 (355)
                      +.+....  .....  ....|..+.++++|+.+ ++....                                    +.|.
T Consensus       143 d~~~~~~--~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~------------------------------------~~v~  182 (300)
T TIGR03866       143 DTKTYEI--VDNVL--VDQRPRFAEFTADGKELWVSSEIG------------------------------------GTVS  182 (300)
T ss_pred             eCCCCeE--EEEEE--cCCCccEEEECCCCCEEEEEcCCC------------------------------------CEEE
Confidence            6543211  11111  12346778889999754 543221                                    3577


Q ss_pred             EEeCCCCeEEEEEECCC-CC--cccceeEEEE--eCCEEEEeecCCCeEEEeeCCC
Q 018474          297 KVDGNDGKIIRDFNDPD-AT--YISFVTSAAE--FDGNLYLASLQSNFIGILPLDG  347 (355)
Q Consensus       297 ~~~~~~g~~~~~~~~~~-g~--~~~~~~~~~~--~~g~L~v~~~~~~~i~~~~~~~  347 (355)
                      .+|.++++....+.... +.  .......+..  ++..+|++....+.+.++++.+
T Consensus       183 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~  238 (300)
T TIGR03866       183 VIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKT  238 (300)
T ss_pred             EEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCC
Confidence            77775566555543211 10  0001222322  3456677766667787777653

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=99.19  E-value=6.6e-09  Score=93.64  Aligned_cols=183  Identities=17%  Similarity=0.158  Sum_probs=116.7

Q ss_pred             cccCeEECCCCCEEEEeCCC-------------cEEEEc-CCC--eEEEcCC--c----CCcccEEEcc-C-----CcEE
Q 018474           95 SLLGLTTTKDGGVILCDNEK-------------GLLKVT-EEG--VEAIVPD--A----SFTNDVIAAS-D-----GTLY  146 (355)
Q Consensus        95 p~~gl~~d~~g~L~v~~~~~-------------gl~~~~-~~g--~~~~~~~--~----~~~~~l~~d~-d-----G~ly  146 (355)
                      ++ ++.+|+.|+|||.|.+.             .|+.+| .++  ++++.-+  .    .+.+++++|. +     +.+|
T Consensus         3 V~-~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aY   81 (287)
T PF03022_consen    3 VQ-RVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAY   81 (287)
T ss_dssp             EE-EEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred             cc-EEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEE
Confidence            35 78899999999998652             388888 455  5554322  1    7889999996 2     4799


Q ss_pred             EEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccc--------------------cccccEEEeC---CCCE
Q 018474          147 FTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGF--------------------YFANGIALSK---NEDF  203 (355)
Q Consensus       147 ~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~--------------------~~pngi~~~~---dg~~  203 (355)
                      ++|.+                 .++|..||..+++...+....                    ....|+++++   |+++
T Consensus        82 ItD~~-----------------~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~  144 (287)
T PF03022_consen   82 ITDSG-----------------GPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRW  144 (287)
T ss_dssp             EEETT-----------------TCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-E
T ss_pred             EeCCC-----------------cCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccE
Confidence            99987                 447888888777655443221                    1135678766   8899


Q ss_pred             EEEEeCCCCeEEEEEeC---CCCCc-------ceeEecccCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHH
Q 018474          204 VVVCESWKFRCRRYWLK---GDRAG-------ILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWEL  273 (355)
Q Consensus       204 l~v~~~~~~~i~~~~~~---~~~~~-------~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~  273 (355)
                      ||+.-.....++++..+   .....       .++.+. ..++..++++.|++|++|++....                 
T Consensus       145 LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG-~k~~~s~g~~~D~~G~ly~~~~~~-----------------  206 (287)
T PF03022_consen  145 LYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLG-DKGSQSDGMAIDPNGNLYFTDVEQ-----------------  206 (287)
T ss_dssp             EEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEE-E---SECEEEEETTTEEEEEECCC-----------------
T ss_pred             EEEEeCCCCcEEEEEHHHhhCccccccccccccceecc-ccCCCCceEEECCCCcEEEecCCC-----------------
Confidence            99998777788888742   22111       122222 233457999999999999998652                 


Q ss_pred             HHhccchhhcccCCCCCCceEEEEEeCCCC-----eEEEEEECCCCCcccceeEEEEeC---CEEEEeec
Q 018474          274 LDAYPGLISLLLPMGSDAGARVVKVDGNDG-----KIIRDFNDPDATYISFVTSAAEFD---GNLYLASL  335 (355)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g-----~~~~~~~~~~g~~~~~~~~~~~~~---g~L~v~~~  335 (355)
                                         .+|.+.++ ++     +....+++++.+  ..+.++..++   |+||+.+.
T Consensus       207 -------------------~aI~~w~~-~~~~~~~~~~~l~~d~~~l--~~pd~~~i~~~~~g~L~v~sn  254 (287)
T PF03022_consen  207 -------------------NAIGCWDP-DGPYTPENFEILAQDPRTL--QWPDGLKIDPEGDGYLWVLSN  254 (287)
T ss_dssp             -------------------TEEEEEET-TTSB-GCCEEEEEE-CC-G--SSEEEEEE-T--TS-EEEEE-
T ss_pred             -------------------CeEEEEeC-CCCcCccchheeEEcCcee--eccceeeeccccCceEEEEEC
Confidence                               47999999 77     555566676643  3566666655   99999873

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=99.19  E-value=4.1e-09  Score=98.84  Aligned_cols=205  Identities=18%  Similarity=0.176  Sum_probs=122.6

Q ss_pred             eEecCCCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCC------eeEEeec----c----CCCcccCeEECCCCCEEE
Q 018474           44 TKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNE------TLVNWKH----I----DSQSLLGLTTTKDGGVIL  109 (355)
Q Consensus        44 ~~~~~~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g------~~~~~~~----~----~~~p~~gl~~d~~g~L~v  109 (355)
                      +.+.++ +..|++|++. .++ +|++.. ..|+++.-.++      +.+.+..    .    ...++ +++++++|+||+
T Consensus        65 ~vfa~~-l~~p~Gi~~~-~~G-lyV~~~-~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~-~l~~gpDG~LYv  139 (367)
T TIGR02604        65 NVFAEE-LSMVTGLAVA-VGG-VYVATP-PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLN-SLAWGPDGWLYF  139 (367)
T ss_pred             EEeecC-CCCccceeEe-cCC-EEEeCC-CeEEEEeCCCCCCCCCCccEEEEEccCCCCCccccccc-CceECCCCCEEE
Confidence            344444 7889999998 677 998764 45888843222      3333322    1    12377 999999999999


Q ss_pred             EeCC--------------------CcEEEEcCCC--eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccC
Q 018474          110 CDNE--------------------KGLLKVTEEG--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGK  167 (355)
Q Consensus       110 ~~~~--------------------~gl~~~~~~g--~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~  167 (355)
                      +...                    ++++++++++  ++.++.....|++++++++|++|++|.....  ......+.++.
T Consensus       140 ~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~~~--~~~i~~~~~g~  217 (367)
T TIGR02604       140 NHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDNDDPP--LCRVTPVAEGG  217 (367)
T ss_pred             ecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEccCCCc--eeEEccccccc
Confidence            7651                    3589998754  7777777789999999999999999864210  00011111111


Q ss_pred             CCCeEE-----EEeCCCC---eE-------------EEe--eccccccccEEEeC-------CCCEEEEEeCCCCeEEEE
Q 018474          168 PYGQLR-----KYDPKLK---ET-------------TVL--HEGFYFANGIALSK-------NEDFVVVCESWKFRCRRY  217 (355)
Q Consensus       168 ~~g~l~-----~~dp~~~---~~-------------~~~--~~~~~~pngi~~~~-------dg~~l~v~~~~~~~i~~~  217 (355)
                      ..|..+     ..++..+   +.             ...  ......|.|+++..       -...+++++...++|+++
T Consensus       218 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ap~G~~~y~g~~fp~~~~g~~fv~~~~~~~v~~~  297 (367)
T TIGR02604       218 RNGYQSFNGRRYDHADRGADHEVPTGEWRQDDRGVETVGDVAGGGTAPCGIAFYRGDALPEEYRGLLLVGDAHGQLIVRY  297 (367)
T ss_pred             ccCCCCCCCcccccccccccccccccccccccccccccccccCCCccccEEEEeCCCcCCHHHCCCEEeeeccCCEEEEE
Confidence            001000     0011100   00             000  01113578888873       234588999989999999


Q ss_pred             EeCC--CCC-cceeEecccC-C-CCcCceEECCCCCEEEEeec
Q 018474          218 WLKG--DRA-GILDAFIENL-P-GGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       218 ~~~~--~~~-~~~~~~~~~~-~-g~p~~i~~d~~G~lwv~~~~  255 (355)
                      .++.  ... ++.+.|.... . +.|..+.+++||.|||++..
T Consensus       298 ~l~~~g~~~~~~~~~~l~~~~~~~rp~dv~~~pDG~Lyv~d~~  340 (367)
T TIGR02604       298 SLEPKGAGFKGERPEFLRSNDTWFRPVNVTVGPDGALYVSDWY  340 (367)
T ss_pred             EeecCCCccEeecCceEecCCCcccccceeECCCCCEEEEEec
Confidence            9852  211 1212233221 1 46788999999999999964

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=99.11  E-value=2e-07  Score=87.82  Aligned_cols=242  Identities=15%  Similarity=0.163  Sum_probs=158.7

Q ss_pred             CCCceEEEeeCCCeEEEEecCC-EEEEEEcCCCeeEEeeccC-CCcccCeEECCCCC-EEEEeCC-CcEEEEc-CCC--e
Q 018474           52 NHPEDVSVVVSKGALYTATRDG-WVKYFILHNETLVNWKHID-SQSLLGLTTTKDGG-VILCDNE-KGLLKVT-EEG--V  124 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~~g-~i~~~~~~~g~~~~~~~~~-~~p~~gl~~d~~g~-L~v~~~~-~gl~~~~-~~g--~  124 (355)
                      ..|..++..+.+..+|+..... .+..++........+...+ ..|. +++..+.|. +|+.+.. +.+..++ ...  .
T Consensus        31 ~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~-~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~  109 (381)
T COG3391          31 RGPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPA-GVAVNPAGNKVYVTTGDSNTVSVIDTATNTVL  109 (381)
T ss_pred             CCCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCcccc-ceeeCCCCCeEEEecCCCCeEEEEcCccccee
Confidence            4899999997777899876533 4555655433334333333 5688 999987776 9998865 4566666 322  3


Q ss_pred             EEEcCCcCCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCE
Q 018474          125 EAIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDF  203 (355)
Q Consensus       125 ~~~~~~~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~  203 (355)
                      +..... ..|.+++++++| .+|+++...               ..+.+..+|+.+++..........|-+++++|+|+.
T Consensus       110 ~~~~vG-~~P~~~~~~~~~~~vYV~n~~~---------------~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~  173 (381)
T COG3391         110 GSIPVG-LGPVGLAVDPDGKYVYVANAGN---------------GNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNK  173 (381)
T ss_pred             eEeeec-cCCceEEECCCCCEEEEEeccc---------------CCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCe
Confidence            333222 489999999988 899998751               146789999988876554444446899999999999


Q ss_pred             EEEEeCCCCeEEEEEeCCCCCcc-e-eEecccCCCCcCceEECCCCC-EEEEeecCCchhhHhhhcchhHHHHHHhccch
Q 018474          204 VVVCESWKFRCRRYWLKGDRAGI-L-DAFIENLPGGPDNINLAPDGS-FWIGLIKMNQTGVRAIQKCREKWELLDAYPGL  280 (355)
Q Consensus       204 l~v~~~~~~~i~~~~~~~~~~~~-~-~~~~~~~~g~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (355)
                      +|+++...++|..++.++..... . .... .....|.++.++++|+ +|+.....                        
T Consensus       174 vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~-~~~~~P~~i~v~~~g~~~yV~~~~~------------------------  228 (381)
T COG3391         174 VYVTNSDDNTVSVIDTSGNSVVRGSVGSLV-GVGTGPAGIAVDPDGNRVYVANDGS------------------------  228 (381)
T ss_pred             EEEEecCCCeEEEEeCCCcceecccccccc-ccCCCCceEEECCCCCEEEEEeccC------------------------
Confidence            99999889999999976543321 1 0011 2234588999999997 78877551                        


Q ss_pred             hhcccCCCCCCceEEEEEeCCCCeEEEE-EECCCCCcccceeEEEEeCCEEEEeecCCCeEEEeeCCC
Q 018474          281 ISLLLPMGSDAGARVVKVDGNDGKIIRD-FNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLDG  347 (355)
Q Consensus       281 ~~~~~~~~~~~~~~v~~~~~~~g~~~~~-~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~~  347 (355)
                                ....+.++|...+..+.. +..  +........+..++...|+.....+.+.+++.+.
T Consensus       229 ----------~~~~v~~id~~~~~v~~~~~~~--~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~  284 (381)
T COG3391         229 ----------GSNNVLKIDTATGNVTATDLPV--GSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGAT  284 (381)
T ss_pred             ----------CCceEEEEeCCCceEEEecccc--ccCCCCceeECCCCCEEEEEecCCCeEEEEeCCC
Confidence                      124688888745554443 222  2111122223345577777776677777776554

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.99  E-value=2.3e-06  Score=78.71  Aligned_cols=246  Identities=15%  Similarity=0.101  Sum_probs=140.9

Q ss_pred             CCeEEEEecC-----CEEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeC---------CCc-EEEEc-CCC--
Q 018474           63 KGALYTATRD-----GWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDN---------EKG-LLKVT-EEG--  123 (355)
Q Consensus        63 ~g~l~~~~~~-----g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~---------~~g-l~~~~-~~g--  123 (355)
                      ..++|+....     ++|+.+|..+++...-...+.+|+ ++ +.++|+ ||+|..         ... +-.+| .++  
T Consensus        12 ~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~   89 (352)
T TIGR02658        12 ARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP   89 (352)
T ss_pred             CCEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE
Confidence            3456665443     889999998888776666778899 86 888875 899987         333 55666 355  


Q ss_pred             eEEEcCC-------cCCcccEEEccCC-cEEEEeCCCCCC-----Cc--cccc--------cccc-c-------CCCCeE
Q 018474          124 VEAIVPD-------ASFTNDVIAASDG-TLYFTVASTKYT-----PT--DFYK--------DMAE-G-------KPYGQL  172 (355)
Q Consensus       124 ~~~~~~~-------~~~~~~l~~d~dG-~ly~~d~~~~~~-----~~--~~~~--------~~~~-~-------~~~g~l  172 (355)
                      +..+...       ...++.+++++|| .+|+.+....-.     ..  ....        .++. +       ...|..
T Consensus        90 ~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~  169 (352)
T TIGR02658        90 IADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSL  169 (352)
T ss_pred             EeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCce
Confidence            4444321       1566789999999 699877431100     00  0000        0110 0       011222


Q ss_pred             EE--EeCCCCeEEE----eecc-----ccccccEEEeC-CCCEEEEEeCCCCeEEEEEeCCCCCcce---eEecccC---
Q 018474          173 RK--YDPKLKETTV----LHEG-----FYFANGIALSK-NEDFVVVCESWKFRCRRYWLKGDRAGIL---DAFIENL---  234 (355)
Q Consensus       173 ~~--~dp~~~~~~~----~~~~-----~~~pngi~~~~-dg~~l~v~~~~~~~i~~~~~~~~~~~~~---~~~~~~~---  234 (355)
                      ..  ++. +|+...    +...     ...|   .+++ ||+.+|++..  +.|+.+++++......   ..+....   
T Consensus       170 ~~v~~d~-~g~~~~~~~~vf~~~~~~v~~rP---~~~~~dg~~~~vs~e--G~V~~id~~~~~~~~~~~~~~~~~~~~~~  243 (352)
T TIGR02658       170 AKVGYGT-KGNPKIKPTEVFHPEDEYLINHP---AYSNKSGRLVWPTYT--GKIFQIDLSSGDAKFLPAIEAFTEAEKAD  243 (352)
T ss_pred             EEEEecC-CCceEEeeeeeecCCccccccCC---ceEcCCCcEEEEecC--CeEEEEecCCCcceecceeeecccccccc
Confidence            11  121 111111    1011     1223   3455 8888888765  8999999765432221   2111111   


Q ss_pred             CCCcCc---eEECCCC-CEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEE
Q 018474          235 PGGPDN---INLAPDG-SFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFN  310 (355)
Q Consensus       235 ~g~p~~---i~~d~~G-~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~  310 (355)
                      ...|.+   ++++++| ++||++.++...    .+                       -.+...|..+|.++++.+..+.
T Consensus       244 ~wrP~g~q~ia~~~dg~~lyV~~~~~~~~----th-----------------------k~~~~~V~ViD~~t~kvi~~i~  296 (352)
T TIGR02658       244 GWRPGGWQQVAYHRARDRIYLLADQRAKW----TH-----------------------KTASRFLFVVDAKTGKRLRKIE  296 (352)
T ss_pred             ccCCCcceeEEEcCCCCEEEEEecCCccc----cc-----------------------cCCCCEEEEEECCCCeEEEEEe
Confidence            124555   8888776 699987653200    00                       0223479999997888888876


Q ss_pred             CCCCCcccceeEEE--EeCC-EEEEeecCCCeEEEeeCCCC
Q 018474          311 DPDATYISFVTSAA--EFDG-NLYLASLQSNFIGILPLDGP  348 (355)
Q Consensus       311 ~~~g~~~~~~~~~~--~~~g-~L~v~~~~~~~i~~~~~~~~  348 (355)
                      ...     .+..+.  .++. .||+.+-.++.|.+++..+.
T Consensus       297 vG~-----~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~  332 (352)
T TIGR02658       297 LGH-----EIDSINVSQDAKPLLYALSTGDKTLYIFDAETG  332 (352)
T ss_pred             CCC-----ceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence            522     233333  3456 78888888999999997655

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=98.97  E-value=1.3e-08  Score=95.59  Aligned_cols=195  Identities=17%  Similarity=0.157  Sum_probs=111.4

Q ss_pred             CCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeec--cCCCcccCeEECCCCCEEEEeCCCcEEEEc-CC-CeEE-E
Q 018474           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH--IDSQSLLGLTTTKDGGVILCDNEKGLLKVT-EE-GVEA-I  127 (355)
Q Consensus        53 ~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~--~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~-~~-g~~~-~  127 (355)
                      .-..++.| ..+.||+++..| +++.++..-++..+..  ..+.+. .+..|.+|.+|+++. +|+.++. +. ++.. .
T Consensus       207 ~I~al~~d-~qg~LWVGTdqG-v~~~e~~G~~~sn~~~~lp~~~I~-ll~qD~qG~lWiGTe-nGl~r~~l~rq~Lq~~~  282 (671)
T COG3292         207 AINALIAD-VQGRLWVGTDQG-VYLQEAEGWRASNWGPMLPSGNIL-LLVQDAQGELWIGTE-NGLWRTRLPRQGLQIPL  282 (671)
T ss_pred             hHHHHHHH-hcCcEEEEeccc-eEEEchhhccccccCCCCcchhee-eeecccCCCEEEeec-ccceeEecCCCCccccc
Confidence            34456666 678899999777 8888775533332211  123455 677899999999984 5788776 43 3222 1


Q ss_pred             c---CCcCCcccEEEccCCcEEEEeCCCCC--CCcccc------------------------ccccccCCCCeEEEEeCC
Q 018474          128 V---PDASFTNDVIAASDGTLYFTVASTKY--TPTDFY------------------------KDMAEGKPYGQLRKYDPK  178 (355)
Q Consensus       128 ~---~~~~~~~~l~~d~dG~ly~~d~~~~~--~~~~~~------------------------~~~~~~~~~g~l~~~dp~  178 (355)
                      .   .....++++..|.+|.+|+++.....  ...++.                        ..++..+..|-+..-++.
T Consensus       283 ~~~~l~~S~vnsL~~D~dGsLWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~s  362 (671)
T COG3292         283 SKMHLGVSTVNSLWLDTDGSLWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGS  362 (671)
T ss_pred             cccCCccccccceeeccCCCEeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCC
Confidence            1   12277899999999999998865321  111110                        011222223335556666


Q ss_pred             CCeEEEeecccc--ccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCC-CcCceEECCCCCEEEEeec
Q 018474          179 LKETTVLHEGFY--FANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPG-GPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       179 ~~~~~~~~~~~~--~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g-~p~~i~~d~~G~lwv~~~~  255 (355)
                      +|..-.......  .-.-.+++.+|+ +|+.. ..+++.+++.+.  .+..-.-..+++. -..-+..|.++++|+++..
T Consensus       363 tG~~v~sv~q~Rg~nit~~~~d~~g~-lWlgs-~q~GLsrl~n~n--~~avlde~agl~ss~V~aived~dnsLWIGTs~  438 (671)
T COG3292         363 TGELVRSVHQLRGMNITTTLEDSRGR-LWLGS-MQNGLSRLDNKN--EWAVLDEDAGLPSSEVSAIVEDPDNSLWIGTSG  438 (671)
T ss_pred             CCcEEEEeeeccccccchhhhccCCc-EEEEe-cccchhhhccCC--cccccccccCCcccceeeeeecCCCCEEEeccC
Confidence            665433222222  223345666665 77765 456899988643  1111111112221 1233678999999999975

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=98.96  E-value=6.3e-07  Score=90.95  Aligned_cols=177  Identities=15%  Similarity=0.188  Sum_probs=115.9

Q ss_pred             CCCceEEEeeCCCeEEEEec-CCEEEEEEcCCC-----eeEEeec----------cC-----------CCcccCeEECCC
Q 018474           52 NHPEDVSVVVSKGALYTATR-DGWVKYFILHNE-----TLVNWKH----------ID-----------SQSLLGLTTTKD  104 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~-~g~i~~~~~~~g-----~~~~~~~----------~~-----------~~p~~gl~~d~~  104 (355)
                      ..--.||++|-+|.||++.. ..+|+|+..-.+     .++.++-          .+           ..|. ||++|++
T Consensus       407 sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~Pk-GIa~dk~  485 (1899)
T KOG4659|consen  407 SHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPK-GIAFDKM  485 (1899)
T ss_pred             cceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccCcchhcccceeccCC-ceeEccC
Confidence            44557899999999999876 578888854222     1222211          11           2488 9999999


Q ss_pred             CCEEEEeCCCcEEEEcCCC-eEEEcCC------c--------------CCcccEEEcc-CCcEEEEeCCCCCCCcccccc
Q 018474          105 GGVILCDNEKGLLKVTEEG-VEAIVPD------A--------------SFTNDVIAAS-DGTLYFTVASTKYTPTDFYKD  162 (355)
Q Consensus       105 g~L~v~~~~~gl~~~~~~g-~~~~~~~------~--------------~~~~~l~~d~-dG~ly~~d~~~~~~~~~~~~~  162 (355)
                      |.||++|. ..|-.+|.+| +..+...      +              .+|.+++++| |+.||+-|..           
T Consensus       486 g~lYfaD~-t~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~n-----------  553 (1899)
T KOG4659|consen  486 GNLYFADG-TRIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDTN-----------  553 (1899)
T ss_pred             CcEEEecc-cEEEEeccCceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEeecc-----------
Confidence            99999984 4677777788 6554321      0              8999999999 7799998755           


Q ss_pred             ccccCCCCeEEEEeCCCCeEEEee---------------------ccccccccEEEeCCCCEEEEEeCCCCeEEEEEe--
Q 018474          163 MAEGKPYGQLRKYDPKLKETTVLH---------------------EGFYFANGIALSKNEDFVVVCESWKFRCRRYWL--  219 (355)
Q Consensus       163 ~~~~~~~g~l~~~dp~~~~~~~~~---------------------~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~--  219 (355)
                              -++++++. ++++.+.                     ..+..+..|+++++|. ||++|+...+|-|+..  
T Consensus       554 --------vvlrit~~-~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~-lyvaEsD~rriNrvr~~~  623 (1899)
T KOG4659|consen  554 --------VVLRITVV-HRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGA-LYVAESDGRRINRVRKLS  623 (1899)
T ss_pred             --------eEEEEccC-ccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCce-EEEEeccchhhhheEEec
Confidence                    23333332 2222111                     1234567899999997 9999998777766553  


Q ss_pred             -CCCCCcceeEecc-------------------------cCCCCcCceEECCCCCEEEEeec
Q 018474          220 -KGDRAGILDAFIE-------------------------NLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       220 -~~~~~~~~~~~~~-------------------------~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                       +|    +.-.++.                         ..-..|..+++.+||.++|++.+
T Consensus       624 tdg----~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v~IAD~g  681 (1899)
T KOG4659|consen  624 TDG----TISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDVIIADSG  681 (1899)
T ss_pred             cCc----eEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCcEEEecCC
Confidence             22    1111110                         00013667889999999999976

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.91  E-value=3.3e-07  Score=86.39  Aligned_cols=182  Identities=16%  Similarity=0.127  Sum_probs=129.5

Q ss_pred             CCCceEEEeeCCCeEEEEec-CCEEEEEEcCCCeeEEeeccCCCcccCeEECCCC-CEEEEeCC---CcEEEEcC-CC--
Q 018474           52 NHPEDVSVVVSKGALYTATR-DGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDG-GVILCDNE---KGLLKVTE-EG--  123 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~-~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g-~L~v~~~~---~gl~~~~~-~g--  123 (355)
                      ..|.+++..+.+..+|+.+. ++.|..+|..+.+.......+..|. +++++++| .+||++..   .-+..++. ++  
T Consensus        74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~-~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~  152 (381)
T COG3391          74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPV-GLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV  152 (381)
T ss_pred             ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCc-eEEECCCCCEEEEEecccCCceEEEEeCCCCeE
Confidence            78999999977777999876 4789999966666655555556899 99999887 79999984   33666674 44  


Q ss_pred             eEEEcCCcCCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEE-----eeccccccccEEE
Q 018474          124 VEAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV-----LHEGFYFANGIAL  197 (355)
Q Consensus       124 ~~~~~~~~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~-----~~~~~~~pngi~~  197 (355)
                      .+..... ..|.+++++++|+ +|+++..                 .+.+..+|+++.....     .......|.++++
T Consensus       153 ~~~~~vG-~~P~~~a~~p~g~~vyv~~~~-----------------~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v  214 (381)
T COG3391         153 TATIPVG-NTPTGVAVDPDGNKVYVTNSD-----------------DNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAV  214 (381)
T ss_pred             EEEEecC-CCcceEEECCCCCeEEEEecC-----------------CCeEEEEeCCCcceeccccccccccCCCCceEEE
Confidence            2322221 4679999999995 9999854                 5678888877665553     1233567999999


Q ss_pred             eCCCCEEEEEeCCC--CeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEee
Q 018474          198 SKNEDFVVVCESWK--FRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLI  254 (355)
Q Consensus       198 ~~dg~~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~  254 (355)
                      ++||+.+|+++..+  +.+.+++...........-. ... .|.++..+++|..+....
T Consensus       215 ~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~-~~~-~~~~v~~~p~g~~~yv~~  271 (381)
T COG3391         215 DPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPV-GSG-APRGVAVDPAGKAAYVAN  271 (381)
T ss_pred             CCCCCEEEEEeccCCCceEEEEeCCCceEEEecccc-ccC-CCCceeECCCCCEEEEEe
Confidence            99999999999876  58888887543222211111 222 588899999997555543

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=98.89  E-value=4.3e-07  Score=83.88  Aligned_cols=154  Identities=19%  Similarity=0.283  Sum_probs=95.4

Q ss_pred             CCCceEEEeeCCCeEEEEecCCEEEEEEcCCCee-EEeecc-------CCCcccCeEECCC----CCEEEEeCCC-----
Q 018474           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETL-VNWKHI-------DSQSLLGLTTTKD----GGVILCDNEK-----  114 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~-~~~~~~-------~~~p~~gl~~d~~----g~L~v~~~~~-----  114 (355)
                      ..|.+|++. .+|.+|++...|+|++++. ++.. ..+...       ..... |++++++    +.||++....     
T Consensus         2 ~~P~~~a~~-pdG~l~v~e~~G~i~~~~~-~g~~~~~v~~~~~v~~~~~~gll-gia~~p~f~~n~~lYv~~t~~~~~~~   78 (331)
T PF07995_consen    2 NNPRSMAFL-PDGRLLVAERSGRIWVVDK-DGSLKTPVADLPEVFADGERGLL-GIAFHPDFASNGYLYVYYTNADEDGG   78 (331)
T ss_dssp             SSEEEEEEE-TTSCEEEEETTTEEEEEET-TTEECEEEEE-TTTBTSTTBSEE-EEEE-TTCCCC-EEEEEEEEE-TSSS
T ss_pred             CCceEEEEe-CCCcEEEEeCCceEEEEeC-CCcCcceecccccccccccCCcc-cceeccccCCCCEEEEEEEcccCCCC
Confidence            579999999 5688999999999999994 5554 322221       12356 8899974    8899976521     


Q ss_pred             ----cEEEEc--CC-C----eEEE----cC---CcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEe
Q 018474          115 ----GLLKVT--EE-G----VEAI----VP---DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYD  176 (355)
Q Consensus       115 ----gl~~~~--~~-g----~~~~----~~---~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~d  176 (355)
                          .|.++.  .. .    .+.+    ..   .......|++++||.||++.....-  .......  ....|.++|++
T Consensus        79 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~--~~~~~~~--~~~~G~ilri~  154 (331)
T PF07995_consen   79 DNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN--DDNAQDP--NSLRGKILRID  154 (331)
T ss_dssp             SEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT--GGGGCST--TSSTTEEEEEE
T ss_pred             CcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC--ccccccc--ccccceEEEec
Confidence                466665  22 1    2222    11   1145566999999999998754211  1111111  23367899999


Q ss_pred             CCCC-------------eEEEeeccccccccEEEeCCCCEEEEEeCCCC
Q 018474          177 PKLK-------------ETTVLHEGFYFANGIALSKNEDFVVVCESWKF  212 (355)
Q Consensus       177 p~~~-------------~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~  212 (355)
                      +++.             ..+.++.++.+|.+++++|....||+++.+..
T Consensus       155 ~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~  203 (331)
T PF07995_consen  155 PDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPD  203 (331)
T ss_dssp             TTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SS
T ss_pred             ccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCC
Confidence            8643             34566788999999999999334999997643

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=98.86  E-value=7.8e-06  Score=72.04  Aligned_cols=178  Identities=16%  Similarity=0.217  Sum_probs=113.8

Q ss_pred             ceEEEeeCCCeEEEEecCCEEEEEEcCCCe-eEEeeccCCCcccCeEECCCCCEEEEeC-CCcEEEEcC-CC--eEEEcC
Q 018474           55 EDVSVVVSKGALYTATRDGWVKYFILHNET-LVNWKHIDSQSLLGLTTTKDGGVILCDN-EKGLLKVTE-EG--VEAIVP  129 (355)
Q Consensus        55 ~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~-~~~~~~~~~~p~~gl~~d~~g~L~v~~~-~~gl~~~~~-~g--~~~~~~  129 (355)
                      ..+.+.+.+..++++..+|.|..++..+++ ...+......+. ++.+.++++++++.. .+.+..++. ++  ...+..
T Consensus        55 ~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  133 (289)
T cd00200          55 RDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVS-SVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRG  133 (289)
T ss_pred             eEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEE-EEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEecc
Confidence            377888555688888889999999987653 333332233566 888988888887776 445666663 34  444443


Q ss_pred             CcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEE-eeccccccccEEEeCCCCEEEEEe
Q 018474          130 DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV-LHEGFYFANGIALSKNEDFVVVCE  208 (355)
Q Consensus       130 ~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~-~~~~~~~pngi~~~~dg~~l~v~~  208 (355)
                      ....+.++.+++++.+.++...                 .+.+..||..+++... +.........++++++++.++++.
T Consensus       134 ~~~~i~~~~~~~~~~~l~~~~~-----------------~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  196 (289)
T cd00200         134 HTDWVNSVAFSPDGTFVASSSQ-----------------DGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSS  196 (289)
T ss_pred             CCCcEEEEEEcCcCCEEEEEcC-----------------CCcEEEEEccccccceeEecCccccceEEECCCcCEEEEec
Confidence            3356888999998877665432                 4568888876554332 222223467889999998777766


Q ss_pred             CCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEee
Q 018474          209 SWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLI  254 (355)
Q Consensus       209 ~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~  254 (355)
                      . .+.|..|++....  ....+. ........+.+++++.++++..
T Consensus       197 ~-~~~i~i~d~~~~~--~~~~~~-~~~~~i~~~~~~~~~~~~~~~~  238 (289)
T cd00200         197 S-DGTIKLWDLSTGK--CLGTLR-GHENGVNSVAFSPDGYLLASGS  238 (289)
T ss_pred             C-CCcEEEEECCCCc--eecchh-hcCCceEEEEEcCCCcEEEEEc
Confidence            5 6789999875321  111111 1222345677888887777765

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=98.79  E-value=1.7e-05  Score=69.90  Aligned_cols=180  Identities=17%  Similarity=0.229  Sum_probs=109.8

Q ss_pred             CCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeec-cCCCcccCeEECCCCC-EEEEeCCCcEEEEc-CCC--eEE
Q 018474           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH-IDSQSLLGLTTTKDGG-VILCDNEKGLLKVT-EEG--VEA  126 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~-~~~~p~~gl~~d~~g~-L~v~~~~~gl~~~~-~~g--~~~  126 (355)
                      ....++.+.++++.++++..+|.+..++..+++...... ...... .+.+.++++ ++++...+.+..++ .++  ...
T Consensus        10 ~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~   88 (289)
T cd00200          10 GGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVR-DVAASADGTYLASGSSDKTIRLWDLETGECVRT   88 (289)
T ss_pred             CCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCccee-EEEECCCCCEEEEEcCCCeEEEEEcCcccceEE
Confidence            445678888666778888889999999886664332222 223344 677777775 55555444566666 343  444


Q ss_pred             EcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeec-cccccccEEEeCCCCEEE
Q 018474          127 IVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE-GFYFANGIALSKNEDFVV  205 (355)
Q Consensus       127 ~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~-~~~~pngi~~~~dg~~l~  205 (355)
                      +......+.++.+++++.++++...                 .+.+..||..+++...... .......++++++++.++
T Consensus        89 ~~~~~~~i~~~~~~~~~~~~~~~~~-----------------~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  151 (289)
T cd00200          89 LTGHTSYVSSVAFSPDGRILSSSSR-----------------DKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVA  151 (289)
T ss_pred             EeccCCcEEEEEEcCCCCEEEEecC-----------------CCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEE
Confidence            4433346788888888877776542                 4578888887555433322 223457789999977444


Q ss_pred             EEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCC-EEEEe
Q 018474          206 VCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGS-FWIGL  253 (355)
Q Consensus       206 v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~  253 (355)
                       +....+.|..|++...+.  ...+. ........+.++++|+ ++++.
T Consensus       152 -~~~~~~~i~i~d~~~~~~--~~~~~-~~~~~i~~~~~~~~~~~l~~~~  196 (289)
T cd00200         152 -SSSQDGTIKLWDLRTGKC--VATLT-GHTGEVNSVAFSPDGEKLLSSS  196 (289)
T ss_pred             -EEcCCCcEEEEEcccccc--ceeEe-cCccccceEEECCCcCEEEEec
Confidence             444467888998853221  11121 2222356678888885 55544

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.79  E-value=6.6e-06  Score=79.32  Aligned_cols=203  Identities=11%  Similarity=0.057  Sum_probs=121.6

Q ss_pred             eEEEeeCCCeEEEE-ecC--CEEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCCC---cEEEEcC-CC-eEE
Q 018474           56 DVSVVVSKGALYTA-TRD--GWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEK---GLLKVTE-EG-VEA  126 (355)
Q Consensus        56 ~i~~d~~~g~l~~~-~~~--g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~~---gl~~~~~-~g-~~~  126 (355)
                      +..+.|++..++.. ..+  ..|+.+|..+++.+.+....+... ..++.++|+ |+++....   .|+.++. ++ .+.
T Consensus       222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~-~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~  300 (448)
T PRK04792        222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGING-APRFSPDGKKLALVLSKDGQPEIYVVDIATKALTR  300 (448)
T ss_pred             CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcC-CeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEE
Confidence            56788666666544 333  368999988887665543333344 677888987 65543332   3888884 56 666


Q ss_pred             EcCCcCCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEE
Q 018474          127 IVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVV  205 (355)
Q Consensus       127 ~~~~~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~  205 (355)
                      +...........+++||+ |+++...               .....+|++|.++++.+.+..........+++|||+.++
T Consensus       301 lt~~~~~~~~p~wSpDG~~I~f~s~~---------------~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~  365 (448)
T PRK04792        301 ITRHRAIDTEPSWHPDGKSLIFTSER---------------GGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMI  365 (448)
T ss_pred             CccCCCCccceEECCCCCEEEEEECC---------------CCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEE
Confidence            554333445678899984 6665322               112369999998888766543222234568999999988


Q ss_pred             EEeCCC--CeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCC-EEEEeecCCchhhHhhhcchhHHHHHHhccchhh
Q 018474          206 VCESWK--FRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGS-FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLIS  282 (355)
Q Consensus       206 v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (355)
                      ++....  ..|+++++++..   .+.+...  .......++++|+ ++++....                          
T Consensus       366 ~~~~~~g~~~I~~~dl~~g~---~~~lt~~--~~d~~ps~spdG~~I~~~~~~~--------------------------  414 (448)
T PRK04792        366 MVNRTNGKFNIARQDLETGA---MQVLTST--RLDESPSVAPNGTMVIYSTTYQ--------------------------  414 (448)
T ss_pred             EEEecCCceEEEEEECCCCC---eEEccCC--CCCCCceECCCCCEEEEEEecC--------------------------
Confidence            876543  367778875532   2222111  1112235677886 44444331                          


Q ss_pred             cccCCCCCCceEEEEEeCCCCeEEEEEECCCC
Q 018474          283 LLLPMGSDAGARVVKVDGNDGKIIRDFNDPDA  314 (355)
Q Consensus       283 ~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g  314 (355)
                              ....++.++. +|+....+..+.|
T Consensus       415 --------g~~~l~~~~~-~G~~~~~l~~~~g  437 (448)
T PRK04792        415 --------GKQVLAAVSI-DGRFKARLPAGQG  437 (448)
T ss_pred             --------CceEEEEEEC-CCCceEECcCCCC
Confidence                    1134777788 8887777765544

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.76  E-value=4.3e-05  Score=72.02  Aligned_cols=221  Identities=14%  Similarity=0.097  Sum_probs=118.8

Q ss_pred             ceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEcC-CC-eEEEcCCcC
Q 018474           55 EDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE-EG-VEAIVPDAS  132 (355)
Q Consensus        55 ~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~-~g-~~~~~~~~~  132 (355)
                      .+++++  ++.+|+++.+|.++.+|..+|+..--.........+.+.+ ++++|+++..+.++.++. +| +..-.....
T Consensus        59 ~~p~v~--~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~-~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~  135 (377)
T TIGR03300        59 LQPAVA--GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGAD-GGLVFVGTEKGEVIALDAEDGKELWRAKLSS  135 (377)
T ss_pred             cceEEE--CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEc-CCEEEEEcCCCEEEEEECCCCcEeeeeccCc
Confidence            345565  7799999999999999998887542112222222144554 678999987777999995 77 322111101


Q ss_pred             Cccc-EEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccc------cccEEEeCCCCEEE
Q 018474          133 FTND-VIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYF------ANGIALSKNEDFVV  205 (355)
Q Consensus       133 ~~~~-l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~------pngi~~~~dg~~l~  205 (355)
                      .+.+ .++ .++.+|+...                  .+.++.+|+++|+..........      ....++. ++ .+|
T Consensus       136 ~~~~~p~v-~~~~v~v~~~------------------~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~~-~v~  194 (377)
T TIGR03300       136 EVLSPPLV-ANGLVVVRTN------------------DGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-DG-GVL  194 (377)
T ss_pred             eeecCCEE-ECCEEEEECC------------------CCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-CC-EEE
Confidence            1111 122 2456776532                  46799999988876433221110      0111222 33 455


Q ss_pred             EEeCCCCeEEEEEeCCCCC-cceeEecccCCCC---------cCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHH
Q 018474          206 VCESWKFRCRRYWLKGDRA-GILDAFIENLPGG---------PDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLD  275 (355)
Q Consensus       206 v~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~g~---------p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~  275 (355)
                      +. ...+.+..++.+..+. .+.+ +. ...+.         .....+ .++.+|+++..                    
T Consensus       195 ~~-~~~g~v~ald~~tG~~~W~~~-~~-~~~g~~~~~~~~~~~~~p~~-~~~~vy~~~~~--------------------  250 (377)
T TIGR03300       195 VG-FAGGKLVALDLQTGQPLWEQR-VA-LPKGRTELERLVDVDGDPVV-DGGQVYAVSYQ--------------------  250 (377)
T ss_pred             EE-CCCCEEEEEEccCCCEeeeec-cc-cCCCCCchhhhhccCCccEE-ECCEEEEEEcC--------------------
Confidence            54 3457888888743321 1111 10 00000         000112 24677777654                    


Q ss_pred             hccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeCCEEEEeecCCCeEEEeeCCC
Q 018474          276 AYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLDG  347 (355)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~~  347 (355)
                                       +.++++|.++|+..-....  +    ........++++|+++. ...|..++..+
T Consensus       251 -----------------g~l~a~d~~tG~~~W~~~~--~----~~~~p~~~~~~vyv~~~-~G~l~~~d~~t  298 (377)
T TIGR03300       251 -----------------GRVAALDLRSGRVLWKRDA--S----SYQGPAVDDNRLYVTDA-DGVVVALDRRS  298 (377)
T ss_pred             -----------------CEEEEEECCCCcEEEeecc--C----CccCceEeCCEEEEECC-CCeEEEEECCC
Confidence                             4688899877875443321  1    11223345788888764 56677776643

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=98.75  E-value=4e-07  Score=88.66  Aligned_cols=183  Identities=13%  Similarity=0.109  Sum_probs=118.8

Q ss_pred             CCCceEEEeeCCCeEEE-EecCCEEEEEEcCCCeeEEe-eccCCCcccCeEECCCC-CEEEEeCCCcEEEEc-CCC--eE
Q 018474           52 NHPEDVSVVVSKGALYT-ATRDGWVKYFILHNETLVNW-KHIDSQSLLGLTTTKDG-GVILCDNEKGLLKVT-EEG--VE  125 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~-~~~~g~i~~~~~~~g~~~~~-~~~~~~p~~gl~~d~~g-~L~v~~~~~gl~~~~-~~g--~~  125 (355)
                      .-|.+|.+|-.+..+|. ......|.+-....++.+.+ ......|. ||++|.-+ ++|.+|+...-+-+. .+|  .+
T Consensus      1025 ~IiVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n~~L~SPE-GiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rk 1103 (1289)
T KOG1214|consen 1025 SIIVGIDFDCRERMVYWTDVAGRSISRASLEGAEPETIVNSGLISPE-GIAVDHIRRNMYWTDSVLDKIEVALLDGSERK 1103 (1289)
T ss_pred             ceeeeeecccccceEEEeecCCCccccccccCCCCceeecccCCCcc-ceeeeeccceeeeeccccchhheeecCCceee
Confidence            45677778855555554 44455666666654444433 34456799 99999655 599998764322222 255  33


Q ss_pred             EE-cCCcCCcccEEEcc-CCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEE-EeeccccccccEEEeCCCC
Q 018474          126 AI-VPDASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT-VLHEGFYFANGIALSKNED  202 (355)
Q Consensus       126 ~~-~~~~~~~~~l~~d~-dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~-~~~~~~~~pngi~~~~dg~  202 (355)
                      .+ ....-.|++|++|+ .|+||++|....               +-.|-+-+.+++..+ .+.+++..|||+.|+|..+
T Consensus      1104 vLf~tdLVNPR~iv~D~~rgnLYwtDWnRe---------------nPkIets~mDG~NrRilin~DigLPNGLtfdpfs~ 1168 (1289)
T KOG1214|consen 1104 VLFYTDLVNPRAIVVDPIRGNLYWTDWNRE---------------NPKIETSSMDGENRRILINTDIGLPNGLTFDPFSK 1168 (1289)
T ss_pred             EEEeecccCcceEEeecccCceeecccccc---------------CCcceeeccCCccceEEeecccCCCCCceeCcccc
Confidence            33 34447899999998 679999997621               112322222222222 3356788999999999999


Q ss_pred             EEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474          203 FVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       203 ~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      .|-|.+.+.+++.+...++.  +.+. ...++. +|-++.-+.+. +|..++.
T Consensus      1169 ~LCWvDAGt~rleC~~p~g~--gRR~-i~~~Lq-YPF~itsy~~~-fY~TDWk 1216 (1289)
T KOG1214|consen 1169 LLCWVDAGTKRLECTLPDGT--GRRV-IQNNLQ-YPFSITSYADH-FYHTDWK 1216 (1289)
T ss_pred             eeeEEecCCcceeEecCCCC--cchh-hhhccc-Cceeeeecccc-ceeeccc
Confidence            99999999999999998763  3322 222443 68888877665 7777766

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.73  E-value=2e-05  Score=73.88  Aligned_cols=173  Identities=16%  Similarity=0.128  Sum_probs=102.8

Q ss_pred             CCeEEEEec-CCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCCCcEEEEcC-CC--eEEEcCCcCCcccE
Q 018474           63 KGALYTATR-DGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEKGLLKVTE-EG--VEAIVPDASFTNDV  137 (355)
Q Consensus        63 ~g~l~~~~~-~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~~gl~~~~~-~g--~~~~~~~~~~~~~l  137 (355)
                      ++.+|+... +|.|..+|.++.+.......+..++.++++.+||+ +|+++..+.+..+|. ++  +..+... ..+.++
T Consensus         5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i   83 (369)
T PF02239_consen    5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGI   83 (369)
T ss_dssp             GGEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEE
T ss_pred             ccEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceE
Confidence            445556554 69999999988765544444444441577888887 899876556778884 55  5555444 579999


Q ss_pred             EEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccc--------cccccEEEeCCCCEEEEEe
Q 018474          138 IAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGF--------YFANGIALSKNEDFVVVCE  208 (355)
Q Consensus       138 ~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~--------~~pngi~~~~dg~~l~v~~  208 (355)
                      ++++||+ +|+++..                 .+.+..+|.++.+........        ....+|..++.+..++++-
T Consensus        84 ~~s~DG~~~~v~n~~-----------------~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~l  146 (369)
T PF02239_consen   84 AVSPDGKYVYVANYE-----------------PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNL  146 (369)
T ss_dssp             EE--TTTEEEEEEEE-----------------TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEE
T ss_pred             EEcCCCCEEEEEecC-----------------CCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEE
Confidence            9999995 6666533                 457888898776543322211        1234677788888666666


Q ss_pred             CCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474          209 SWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       209 ~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      -..+.|+.++.+..+.-..+ .. ....+|.+..+|++|+++++...
T Consensus       147 kd~~~I~vVdy~d~~~~~~~-~i-~~g~~~~D~~~dpdgry~~va~~  191 (369)
T PF02239_consen  147 KDTGEIWVVDYSDPKNLKVT-TI-KVGRFPHDGGFDPDGRYFLVAAN  191 (369)
T ss_dssp             TTTTEEEEEETTTSSCEEEE-EE-E--TTEEEEEE-TTSSEEEEEEG
T ss_pred             ccCCeEEEEEecccccccee-ee-cccccccccccCcccceeeeccc
Confidence            66789999997654211111 22 23346888999999997666543

...

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.71  E-value=1.4e-05  Score=76.88  Aligned_cols=204  Identities=12%  Similarity=0.083  Sum_probs=122.7

Q ss_pred             ceEEEeeCCCeEEEEec---CCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCCC---cEEEEcC-CC-eE
Q 018474           55 EDVSVVVSKGALYTATR---DGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEK---GLLKVTE-EG-VE  125 (355)
Q Consensus        55 ~~i~~d~~~g~l~~~~~---~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~~---gl~~~~~-~g-~~  125 (355)
                      .+.++.|++..++..+.   ...|++++..+++.+.+....+... ...+.++|+ |+++....   .|+.++. +| .+
T Consensus       207 ~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~-~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~  285 (433)
T PRK04922        207 LSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGING-APSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT  285 (433)
T ss_pred             ccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCcc-CceECCCCCEEEEEEeCCCCceEEEEECCCCCeE
Confidence            35567766666665543   3469999998887766543333344 678889996 54443222   4888884 66 66


Q ss_pred             EEcCCcCCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEE
Q 018474          126 AIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFV  204 (355)
Q Consensus       126 ~~~~~~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l  204 (355)
                      .+...........+++||+ |+++...               .....+|.+|.++++.+.+..........+++|||+.+
T Consensus       286 ~lt~~~~~~~~~~~spDG~~l~f~sd~---------------~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~I  350 (433)
T PRK04922        286 RLTNHFGIDTEPTWAPDGKSIYFTSDR---------------GGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKI  350 (433)
T ss_pred             ECccCCCCccceEECCCCCEEEEEECC---------------CCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEE
Confidence            6544323345678999995 6665322               01236899998777766554332333467999999988


Q ss_pred             EEEeCCC--CeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCE-EEEeecCCchhhHhhhcchhHHHHHHhccchh
Q 018474          205 VVCESWK--FRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSF-WIGLIKMNQTGVRAIQKCREKWELLDAYPGLI  281 (355)
Q Consensus       205 ~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~l-wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (355)
                      +++....  ..|+.+++++..   .+.+...  .......++++|+. +++...                          
T Consensus       351 a~~~~~~~~~~I~v~d~~~g~---~~~Lt~~--~~~~~p~~spdG~~i~~~s~~--------------------------  399 (433)
T PRK04922        351 AMVHGSGGQYRIAVMDLSTGS---VRTLTPG--SLDESPSFAPNGSMVLYATRE--------------------------  399 (433)
T ss_pred             EEEECCCCceeEEEEECCCCC---eEECCCC--CCCCCceECCCCCEEEEEEec--------------------------
Confidence            8875432  368888875432   2222211  11234567888974 433332                          


Q ss_pred             hcccCCCCCCceEEEEEeCCCCeEEEEEECCCC
Q 018474          282 SLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDA  314 (355)
Q Consensus       282 ~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g  314 (355)
                              .....++.++. +|.....+..+.|
T Consensus       400 --------~g~~~L~~~~~-~g~~~~~l~~~~g  423 (433)
T PRK04922        400 --------GGRGVLAAVST-DGRVRQRLVSADG  423 (433)
T ss_pred             --------CCceEEEEEEC-CCCceEEcccCCC
Confidence                    11246888898 8877666655444

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=98.71  E-value=1.6e-06  Score=84.59  Aligned_cols=194  Identities=13%  Similarity=0.140  Sum_probs=126.3

Q ss_pred             CCcccCeEEC-CCCCEEEEeCCCc-EEEEcCCC--eEEE-cCCcCCcccEEEccCC-cEEEEeCCCCCCCcccccccccc
Q 018474           93 SQSLLGLTTT-KDGGVILCDNEKG-LLKVTEEG--VEAI-VPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEG  166 (355)
Q Consensus        93 ~~p~~gl~~d-~~g~L~v~~~~~g-l~~~~~~g--~~~~-~~~~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~  166 (355)
                      .-|. ||.+| .+..+|.+|..+. |-+-...|  -+.+ -.....|.+|++|.-+ ++|++|+.-              
T Consensus      1025 ~IiV-GidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n~~L~SPEGiAVDh~~Rn~ywtDS~l-------------- 1089 (1289)
T KOG1214|consen 1025 SIIV-GIDFDCRERMVYWTDVAGRSISRASLEGAEPETIVNSGLISPEGIAVDHIRRNMYWTDSVL-------------- 1089 (1289)
T ss_pred             ceee-eeecccccceEEEeecCCCccccccccCCCCceeecccCCCccceeeeeccceeeeecccc--------------
Confidence            3467 99999 5556888886643 44433445  4444 3445899999999765 899999761              


Q ss_pred             CCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCCC--eEEEEEeCCCCCcceeEecccCCCCcCceEEC
Q 018474          167 KPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKF--RCRRYWLKGDRAGILDAFIENLPGGPDNINLA  244 (355)
Q Consensus       167 ~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d  244 (355)
                       ..-.+-..|- +.+...+.+++.+|.+|++++-+..|||++..+.  .|-+.+++|.   +.++++..--++|+|+.+|
T Consensus      1090 -D~IevA~LdG-~~rkvLf~tdLVNPR~iv~D~~rgnLYwtDWnRenPkIets~mDG~---NrRilin~DigLPNGLtfd 1164 (1289)
T KOG1214|consen 1090 -DKIEVALLDG-SERKVLFYTDLVNPRAIVVDPIRGNLYWTDWNRENPKIETSSMDGE---NRRILINTDIGLPNGLTFD 1164 (1289)
T ss_pred             -chhheeecCC-ceeeEEEeecccCcceEEeecccCceeeccccccCCcceeeccCCc---cceEEeecccCCCCCceeC
Confidence             0112333342 1222344678999999999999999999998654  3666666653   4456665555789999999


Q ss_pred             CCCC--EEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeE
Q 018474          245 PDGS--FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTS  322 (355)
Q Consensus       245 ~~G~--lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~  322 (355)
                      +..+  -||-...                                     ..+-++.+ +|.--+...  ++  .....+
T Consensus      1165 pfs~~LCWvDAGt-------------------------------------~rleC~~p-~g~gRR~i~--~~--LqYPF~ 1202 (1289)
T KOG1214|consen 1165 PFSKLLCWVDAGT-------------------------------------KRLECTLP-DGTGRRVIQ--NN--LQYPFS 1202 (1289)
T ss_pred             cccceeeEEecCC-------------------------------------cceeEecC-CCCcchhhh--hc--ccCcee
Confidence            8775  4775543                                     23555566 543322221  23  224455


Q ss_pred             EEEeCCEEEEeecCCCeEEEeeCCCC
Q 018474          323 AAEFDGNLYLASLQSNFIGILPLDGP  348 (355)
Q Consensus       323 ~~~~~g~L~v~~~~~~~i~~~~~~~~  348 (355)
                      +...++++|.++++.|+|..+++-..
T Consensus      1203 itsy~~~fY~TDWk~n~vvsv~~~~~ 1228 (1289)
T KOG1214|consen 1203 ITSYADHFYHTDWKRNGVVSVNKHSG 1228 (1289)
T ss_pred             eeeccccceeeccccCceEEeecccc
Confidence            66667779999999999988876543

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=98.71  E-value=0.0001  Score=64.86  Aligned_cols=239  Identities=12%  Similarity=0.083  Sum_probs=145.6

Q ss_pred             CCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccC-CCcccCeEE-CCCCCEEEEeCC-C-cEEEEc--CCC-
Q 018474           51 VNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHID-SQSLLGLTT-TKDGGVILCDNE-K-GLLKVT--EEG-  123 (355)
Q Consensus        51 ~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~-~~p~~gl~~-d~~g~L~v~~~~-~-gl~~~~--~~g-  123 (355)
                      ...+++|.++.++..+.+++.+..+..+|..+|+........ -.+. -..+ ..+.++..+... + -|-.++  .+. 
T Consensus        14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~-~~~Fth~~~~~i~sStk~d~tIryLsl~dNky   92 (311)
T KOG1446|consen   14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVD-LACFTHHSNTVIHSSTKEDDTIRYLSLHDNKY   92 (311)
T ss_pred             CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeeccccccc-EEEEecCCceEEEccCCCCCceEEEEeecCce
Confidence            367899999965666666677888999999888655433211 1122 2222 334444444331 2 233333  244 


Q ss_pred             eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCE
Q 018474          124 VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDF  203 (355)
Q Consensus       124 ~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~  203 (355)
                      ++.+......+++|.+.|-+..+++.+.                 ...+..||.+..+=+.+.. +..+.-.|++|+|- 
T Consensus        93 lRYF~GH~~~V~sL~~sP~~d~FlS~S~-----------------D~tvrLWDlR~~~cqg~l~-~~~~pi~AfDp~GL-  153 (311)
T KOG1446|consen   93 LRYFPGHKKRVNSLSVSPKDDTFLSSSL-----------------DKTVRLWDLRVKKCQGLLN-LSGRPIAAFDPEGL-  153 (311)
T ss_pred             EEEcCCCCceEEEEEecCCCCeEEeccc-----------------CCeEEeeEecCCCCceEEe-cCCCcceeECCCCc-
Confidence            6666666678999999998888887654                 3467777765443332222 23455689999996 


Q ss_pred             EEEEeCCCCeEEEEEeCCCCCcceeEecccCCC--CcCceEECCCCC-EEEEeecCCchhhHhhhcchhHHHHHHhccch
Q 018474          204 VVVCESWKFRCRRYWLKGDRAGILDAFIENLPG--GPDNINLAPDGS-FWIGLIKMNQTGVRAIQKCREKWELLDAYPGL  280 (355)
Q Consensus       204 l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g--~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (355)
                      ++.+......|..||++.-..+.++.|.-..+.  --.++.++++|+ +.+++..                         
T Consensus       154 ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~-------------------------  208 (311)
T KOG1446|consen  154 IFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNA-------------------------  208 (311)
T ss_pred             EEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCC-------------------------
Confidence            555555566899999865444555555322111  124578999997 6666654                         


Q ss_pred             hhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEE-eCCEEEEeecCCCeEEEeeCCC
Q 018474          281 ISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAE-FDGNLYLASLQSNFIGILPLDG  347 (355)
Q Consensus       281 ~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~  347 (355)
                                  +-+..+|.=+|.....|+...+. ......++. -+++..+++....+|..+++.+
T Consensus       209 ------------s~~~~lDAf~G~~~~tfs~~~~~-~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~t  263 (311)
T KOG1446|consen  209 ------------SFIYLLDAFDGTVKSTFSGYPNA-GNLPLSATFTPDSKFVLSGSDDGTIHVWNLET  263 (311)
T ss_pred             ------------CcEEEEEccCCcEeeeEeeccCC-CCcceeEEECCCCcEEEEecCCCcEEEEEcCC
Confidence                        34666665488888888764322 112233444 4577777777788888888744

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.69  E-value=4.5e-05  Score=73.40  Aligned_cols=158  Identities=11%  Similarity=0.026  Sum_probs=92.3

Q ss_pred             EEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCC---CcEEEEcC-CC-eEEEcCCcCCcccEEEccCC-cEE
Q 018474           74 WVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNE---KGLLKVTE-EG-VEAIVPDASFTNDVIAASDG-TLY  146 (355)
Q Consensus        74 ~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~---~gl~~~~~-~g-~~~~~~~~~~~~~l~~d~dG-~ly  146 (355)
                      .|+..|...+..+.+........ ...+.+||+ |.++...   ..++.++. +| .+.+...........++||| .|.
T Consensus       183 ~l~~~d~dg~~~~~lt~~~~~v~-~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la  261 (435)
T PRK05137        183 RLAIMDQDGANVRYLTDGSSLVL-TPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVV  261 (435)
T ss_pred             EEEEECCCCCCcEEEecCCCCeE-eeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEE
Confidence            56666664444444433333344 677888886 4333322   34888884 66 55554333344567899999 466


Q ss_pred             EEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCC--CCeEEEEEeCCCCC
Q 018474          147 FTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESW--KFRCRRYWLKGDRA  224 (355)
Q Consensus       147 ~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~--~~~i~~~~~~~~~~  224 (355)
                      ++...               .....||.+|.++++.+.+..........+++|||+.++++...  ...|+++++++...
T Consensus       262 ~~~~~---------------~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~  326 (435)
T PRK05137        262 MSLSQ---------------GGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP  326 (435)
T ss_pred             EEEec---------------CCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe
Confidence            65322               11346999999888877665443334557899999988776533  34688888765432


Q ss_pred             cceeEecccCCCCcCceEECCCCCEEE
Q 018474          225 GILDAFIENLPGGPDNINLAPDGSFWI  251 (355)
Q Consensus       225 ~~~~~~~~~~~g~p~~i~~d~~G~lwv  251 (355)
                         +.+... .+.-.....+++|+..+
T Consensus       327 ---~~lt~~-~~~~~~~~~SpdG~~ia  349 (435)
T PRK05137        327 ---RRISFG-GGRYSTPVWSPRGDLIA  349 (435)
T ss_pred             ---EEeecC-CCcccCeEECCCCCEEE
Confidence               222111 22223456778886443

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.69  E-value=2.7e-05  Score=74.67  Aligned_cols=203  Identities=11%  Similarity=0.117  Sum_probs=120.8

Q ss_pred             eEEEeeCCCeEEEEec---CCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCCC---cEEEEcC-CC-eEE
Q 018474           56 DVSVVVSKGALYTATR---DGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEK---GLLKVTE-EG-VEA  126 (355)
Q Consensus        56 ~i~~d~~~g~l~~~~~---~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~~---gl~~~~~-~g-~~~  126 (355)
                      +..+.|++..++..+.   ...|+.+|..+|+...+....+... ..++.+||+ |+++....   .||.++. .+ .+.
T Consensus       200 ~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~-~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~  278 (427)
T PRK02889        200 SPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNS-APAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRR  278 (427)
T ss_pred             cceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCcc-ceEECCCCCEEEEEEccCCCceEEEEECCCCCcEE
Confidence            5678866766665543   2469999998887766654334445 678889986 54443332   4888874 44 555


Q ss_pred             EcCCcCCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEE
Q 018474          127 IVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVV  205 (355)
Q Consensus       127 ~~~~~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~  205 (355)
                      +........+..+++||+ |+++...               .....+|.++..+++.+.+..........+++|||+.++
T Consensus       279 lt~~~~~~~~~~wSpDG~~l~f~s~~---------------~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia  343 (427)
T PRK02889        279 LTQSSGIDTEPFFSPDGRSIYFTSDR---------------GGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLA  343 (427)
T ss_pred             CCCCCCCCcCeEEcCCCCEEEEEecC---------------CCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEE
Confidence            544323345578999994 6665322               012368888877776655432222223468999999887


Q ss_pred             EEeCCC--CeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCE-EEEeecCCchhhHhhhcchhHHHHHHhccchhh
Q 018474          206 VCESWK--FRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSF-WIGLIKMNQTGVRAIQKCREKWELLDAYPGLIS  282 (355)
Q Consensus       206 v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~l-wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (355)
                      ++....  ..|+.+++++..   .+.+...  .......+.++|+. +.+....                          
T Consensus       344 ~~s~~~g~~~I~v~d~~~g~---~~~lt~~--~~~~~p~~spdg~~l~~~~~~~--------------------------  392 (427)
T PRK02889        344 YISRVGGAFKLYVQDLATGQ---VTALTDT--TRDESPSFAPNGRYILYATQQG--------------------------  392 (427)
T ss_pred             EEEccCCcEEEEEEECCCCC---eEEccCC--CCccCceECCCCCEEEEEEecC--------------------------
Confidence            765432  368888875432   2222211  12244677888874 4443321                          


Q ss_pred             cccCCCCCCceEEEEEeCCCCeEEEEEECCCC
Q 018474          283 LLLPMGSDAGARVVKVDGNDGKIIRDFNDPDA  314 (355)
Q Consensus       283 ~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g  314 (355)
                              ....+..++. +|+....+..+.|
T Consensus       393 --------g~~~l~~~~~-~g~~~~~l~~~~g  415 (427)
T PRK02889        393 --------GRSVLAAVSS-DGRIKQRLSVQGG  415 (427)
T ss_pred             --------CCEEEEEEEC-CCCceEEeecCCC
Confidence                    1245777788 8877666665555

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=98.68  E-value=2.9e-07  Score=83.47  Aligned_cols=150  Identities=16%  Similarity=0.185  Sum_probs=105.1

Q ss_pred             CCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeecc-CCC----cccCeEECCCCCEEEEeC-----------
Q 018474           49 GCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI-DSQ----SLLGLTTTKDGGVILCDN-----------  112 (355)
Q Consensus        49 ~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~-~~~----p~~gl~~d~~g~L~v~~~-----------  112 (355)
                      ..+..|-+|+++.++|.||++...-+++.+++.+++.+..... .+.    .+ ++.+|++|.+|++|+           
T Consensus       112 ~~CGRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N-~ldI~~~g~vyFTDSSsk~~~rd~~~  190 (376)
T KOG1520|consen  112 PLCGRPLGIRFDKKGGDLYVADAYLGLLKVGPEGGLAELLADEAEGKPFKFLN-DLDIDPEGVVYFTDSSSKYDRRDFVF  190 (376)
T ss_pred             cccCCcceEEeccCCCeEEEEecceeeEEECCCCCcceeccccccCeeeeecC-ceeEcCCCeEEEeccccccchhheEE
Confidence            3467899999998788999999887899999977775554332 222    45 788888999999874           


Q ss_pred             -------CCcEEEEcC-CC-eEEEcCCcCCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEE---eCCC
Q 018474          113 -------EKGLLKVTE-EG-VEAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKY---DPKL  179 (355)
Q Consensus       113 -------~~gl~~~~~-~g-~~~~~~~~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~---dp~~  179 (355)
                             .+++++||+ +. .+++.+...++|+++.++|+. +.++...                 ..++.+|   -++-
T Consensus       191 a~l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~-----------------~~ri~rywi~g~k~  253 (376)
T KOG1520|consen  191 AALEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETT-----------------TARIKRYWIKGPKA  253 (376)
T ss_pred             eeecCCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeec-----------------cceeeeeEecCCcc
Confidence                   234778875 44 666666679999999999985 5555443                 2345555   3334


Q ss_pred             CeEEEeecc-ccccccEEEeCCCCEEEEEe-CCCCeEEEE
Q 018474          180 KETTVLHEG-FYFANGIALSKNEDFVVVCE-SWKFRCRRY  217 (355)
Q Consensus       180 ~~~~~~~~~-~~~pngi~~~~dg~~l~v~~-~~~~~i~~~  217 (355)
                      |+.++++++ ..+|..|..+++|+ .||+- +.+..++++
T Consensus       254 gt~EvFa~~LPG~PDNIR~~~~G~-fWVal~~~~~~~~~~  292 (376)
T KOG1520|consen  254 GTSEVFAEGLPGYPDNIRRDSTGH-FWVALHSKRSTLWRL  292 (376)
T ss_pred             CchhhHhhcCCCCCcceeECCCCC-EEEEEecccchHHHh
Confidence            444777774 47899999999998 55543 334434443

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.64  E-value=4.2e-05  Score=73.48  Aligned_cols=176  Identities=12%  Similarity=0.098  Sum_probs=106.4

Q ss_pred             ceEEEeeCCCeEE-EEecC--CEEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCCC---cEEEEcC-CC-eE
Q 018474           55 EDVSVVVSKGALY-TATRD--GWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEK---GLLKVTE-EG-VE  125 (355)
Q Consensus        55 ~~i~~d~~~g~l~-~~~~~--g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~~---gl~~~~~-~g-~~  125 (355)
                      .+..+.|++..|+ +...+  ..|+.++..+|+.+.+....+... ...+.++|+ |++.....   .|+.++. ++ .+
T Consensus       202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~-~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~  280 (430)
T PRK00178        202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNG-APAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS  280 (430)
T ss_pred             eeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcC-CeEECCCCCEEEEEEccCCCceEEEEECCCCCeE
Confidence            5567776676664 44332  469999998887776654334444 677888886 54443222   4888884 56 66


Q ss_pred             EEcCCcCCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEE
Q 018474          126 AIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFV  204 (355)
Q Consensus       126 ~~~~~~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l  204 (355)
                      .+...........+++|| .|+++...               .....+|.+|..+++.+.+..........+++|||+.+
T Consensus       281 ~lt~~~~~~~~~~~spDg~~i~f~s~~---------------~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i  345 (430)
T PRK00178        281 RVTNHPAIDTEPFWGKDGRTLYFTSDR---------------GGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTL  345 (430)
T ss_pred             EcccCCCCcCCeEECCCCCEEEEEECC---------------CCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEE
Confidence            655433334456788998 57766432               11236999998888776554332223346799999999


Q ss_pred             EEEeCCC--CeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEE
Q 018474          205 VVCESWK--FRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWI  251 (355)
Q Consensus       205 ~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv  251 (355)
                      +++....  ..|+.+++++..   .+.+.+.  .......++++|+..+
T Consensus       346 ~~~~~~~~~~~l~~~dl~tg~---~~~lt~~--~~~~~p~~spdg~~i~  389 (430)
T PRK00178        346 VMVHRQDGNFHVAAQDLQRGS---VRILTDT--SLDESPSVAPNGTMLI  389 (430)
T ss_pred             EEEEccCCceEEEEEECCCCC---EEEccCC--CCCCCceECCCCCEEE
Confidence            8886533  357788875432   2222211  1122346778887443

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=98.64  E-value=2.5e-07  Score=66.82  Aligned_cols=84  Identities=31%  Similarity=0.457  Sum_probs=62.4

Q ss_pred             ccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCCCeE
Q 018474          135 NDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRC  214 (355)
Q Consensus       135 ~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i  214 (355)
                      |||+.-....+|+|+...-...-....+.+.+.+.+.+..||+  ++.+.+..++..||||+++||++.+|+++...+.|
T Consensus         1 NDIvavG~~sFy~TNDhyf~~~~l~~lE~~l~~~~~~Vvyyd~--~~~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I   78 (86)
T PF01731_consen    1 NDIVAVGPDSFYVTNDHYFTDPFLRLLETYLGLPWGNVVYYDG--KEVKVVASGFSFANGIAISPDKKYLYVASSLAHSI   78 (86)
T ss_pred             CCEEEECcCcEEEECchhhCcHHHHHHHHHhcCCCceEEEEeC--CEeEEeeccCCCCceEEEcCCCCEEEEEeccCCeE
Confidence            5676666678999886522111111223334455678999997  46778889999999999999999999999999999


Q ss_pred             EEEEeC
Q 018474          215 RRYWLK  220 (355)
Q Consensus       215 ~~~~~~  220 (355)
                      .+|..+
T Consensus        79 ~vy~~~   84 (86)
T PF01731_consen   79 HVYKRH   84 (86)
T ss_pred             EEEEec
Confidence            999863

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=98.64  E-value=7.5e-06  Score=83.46  Aligned_cols=198  Identities=15%  Similarity=0.225  Sum_probs=117.7

Q ss_pred             CCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccC----CCcccCeEECC-CCCEEEEeCC-CcEEEEcC-C
Q 018474           50 CVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHID----SQSLLGLTTTK-DGGVILCDNE-KGLLKVTE-E  122 (355)
Q Consensus        50 ~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~----~~p~~gl~~d~-~g~L~v~~~~-~gl~~~~~-~  122 (355)
                      .+..|..++.. .+|.||+|..+= |.|+.+ +|....+.+.+    .+.+ -||+|+ +|.|||.+.. +.++++.. .
T Consensus       363 ~L~aPvala~a-~DGSl~VGDfNy-IRRI~~-dg~v~tIl~L~~t~~sh~Y-y~AvsPvdgtlyvSdp~s~qv~rv~sl~  438 (1899)
T KOG4659|consen  363 SLFAPVALAYA-PDGSLIVGDFNY-IRRISQ-DGQVSTILTLGLTDTSHSY-YIAVSPVDGTLYVSDPLSKQVWRVSSLE  438 (1899)
T ss_pred             eeeceeeEEEc-CCCcEEEccchh-eeeecC-CCceEEEEEecCCCcccee-EEEecCcCceEEecCCCcceEEEeccCC
Confidence            46789999999 789999998754 888888 77665554332    2345 688885 8999999876 46888851 1


Q ss_pred             -----C-eEEEcCCc---------------------CCcccEEEccCCcEEEEeCCCC--CCCccccccccccCCCCeEE
Q 018474          123 -----G-VEAIVPDA---------------------SFTNDVIAASDGTLYFTVASTK--YTPTDFYKDMAEGKPYGQLR  173 (355)
Q Consensus       123 -----g-~~~~~~~~---------------------~~~~~l~~d~dG~ly~~d~~~~--~~~~~~~~~~~~~~~~g~l~  173 (355)
                           + .+.++...                     .+|.++++|.+|.+||+|+..-  -........++..+..-   
T Consensus       439 ~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk~g~lYfaD~t~IR~iD~~giIstlig~~~~~---  515 (1899)
T KOG4659|consen  439 PQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDKMGNLYFADGTRIRVIDTTGIISTLIGTTPDQ---  515 (1899)
T ss_pred             ccccccCeeEEeccCcCccccccccCcchhcccceeccCCceeEccCCcEEEecccEEEEeccCceEEEeccCCCCc---
Confidence                 2 44443210                     7999999999999999987510  00000111111110000   


Q ss_pred             EEeCCC--CeEEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCC------CCccee---------Eeccc-CC
Q 018474          174 KYDPKL--KETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGD------RAGILD---------AFIEN-LP  235 (355)
Q Consensus       174 ~~dp~~--~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~------~~~~~~---------~~~~~-~~  235 (355)
                       +-|.+  +..+...-.+..|..+|++|=.+.||+.++  +-|.+++....      +-.+..         .+++. .-
T Consensus       516 -~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~--nvvlrit~~~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl  592 (1899)
T KOG4659|consen  516 -HPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDT--NVVLRITVVHRVRIILGRPTHCDLANATSSASKLADHRTL  592 (1899)
T ss_pred             -cCccccccccchhheeeecccceeecCCCCeEEEeec--ceEEEEccCccEEEEcCCccccccCCCchhhhhhhhhhhh
Confidence             00000  000000112457899999997778999985  67777775431      000000         00100 00


Q ss_pred             CCcCceEECCCCCEEEEeecCC
Q 018474          236 GGPDNINLAPDGSFWIGLIKMN  257 (355)
Q Consensus       236 g~p~~i~~d~~G~lwv~~~~~~  257 (355)
                      -.+..|++..+|-|||+-..++
T Consensus       593 ~~~r~Iavg~~G~lyvaEsD~r  614 (1899)
T KOG4659|consen  593 LIQRDIAVGTDGALYVAESDGR  614 (1899)
T ss_pred             hhhhceeecCCceEEEEeccch
Confidence            1356788999999999987753

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.61  E-value=5e-05  Score=73.05  Aligned_cols=174  Identities=11%  Similarity=0.056  Sum_probs=108.0

Q ss_pred             ceEEEeeCCCeEEEEec---CCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCC---CcEEEEcC-CC-eE
Q 018474           55 EDVSVVVSKGALYTATR---DGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNE---KGLLKVTE-EG-VE  125 (355)
Q Consensus        55 ~~i~~d~~~g~l~~~~~---~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~---~gl~~~~~-~g-~~  125 (355)
                      .+..+.|++..|+..+.   +..|+.++..+|+.+.+....+... ..++.++|+ |+++...   ..|+.++. ++ .+
T Consensus       205 ~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~-~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~  283 (435)
T PRK05137        205 LTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTF-APRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT  283 (435)
T ss_pred             EeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCccc-CcEECCCCCEEEEEEecCCCceEEEEECCCCceE
Confidence            45667766665554432   4579999998887776654444455 778889996 4444322   24888884 55 66


Q ss_pred             EEcCCcCCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEE
Q 018474          126 AIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFV  204 (355)
Q Consensus       126 ~~~~~~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l  204 (355)
                      .+...........+++||+ |+++...               .....+|.+|.++++.+.+......-...+++|||+.+
T Consensus       284 ~Lt~~~~~~~~~~~spDG~~i~f~s~~---------------~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~i  348 (435)
T PRK05137        284 RLTDSPAIDTSPSYSPDGSQIVFESDR---------------SGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLI  348 (435)
T ss_pred             EccCCCCccCceeEcCCCCEEEEEECC---------------CCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEE
Confidence            6654433445678899994 6665432               11236999998887777665432223456899999988


Q ss_pred             EEEeCCC--CeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCE
Q 018474          205 VVCESWK--FRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSF  249 (355)
Q Consensus       205 ~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~l  249 (355)
                      +++....  .+|+.+++++..   .+.+..  ........+++||+.
T Consensus       349 a~~~~~~~~~~i~~~d~~~~~---~~~lt~--~~~~~~p~~spDG~~  390 (435)
T PRK05137        349 AFTKQGGGQFSIGVMKPDGSG---ERILTS--GFLVEGPTWAPNGRV  390 (435)
T ss_pred             EEEEcCCCceEEEEEECCCCc---eEeccC--CCCCCCCeECCCCCE
Confidence            8876433  468888875432   222221  112345678888874

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.59  E-value=9.8e-05  Score=70.89  Aligned_cols=178  Identities=13%  Similarity=0.066  Sum_probs=108.7

Q ss_pred             ceEEEeeCCCeEEEEe-c--CCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCCC---cEEEEc-CCC-eE
Q 018474           55 EDVSVVVSKGALYTAT-R--DGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEK---GLLKVT-EEG-VE  125 (355)
Q Consensus        55 ~~i~~d~~~g~l~~~~-~--~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~~---gl~~~~-~~g-~~  125 (355)
                      .+..+.|++..+...+ .  +..|+.++..+|+.+.+....+... ...+.+||+ |+++....   .|+.++ +++ .+
T Consensus       202 ~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~-~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~  280 (429)
T PRK03629        202 MSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNG-APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR  280 (429)
T ss_pred             eeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcC-CeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE
Confidence            4678886666554432 2  3468888888887666544334445 678899997 55543322   488888 466 66


Q ss_pred             EEcCCcCCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEE
Q 018474          126 AIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFV  204 (355)
Q Consensus       126 ~~~~~~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l  204 (355)
                      .+...........++|||+ |+++...               ...-.+|.+|.++++.+.+..........+++|||+.+
T Consensus       281 ~lt~~~~~~~~~~wSPDG~~I~f~s~~---------------~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~I  345 (429)
T PRK03629        281 QVTDGRSNNTEPTWFPDSQNLAYTSDQ---------------AGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFM  345 (429)
T ss_pred             EccCCCCCcCceEECCCCCEEEEEeCC---------------CCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEE
Confidence            6654434456778999995 6555322               01236899998888776654333334467899999988


Q ss_pred             EEEeCCC--CeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEe
Q 018474          205 VVCESWK--FRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGL  253 (355)
Q Consensus       205 ~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~  253 (355)
                      +++....  ..|+.+++++..   .+.+...  ..-....+.+||+..+..
T Consensus       346 a~~~~~~g~~~I~~~dl~~g~---~~~Lt~~--~~~~~p~~SpDG~~i~~~  391 (429)
T PRK03629        346 VMVSSNGGQQHIAKQDLATGG---VQVLTDT--FLDETPSIAPNGTMVIYS  391 (429)
T ss_pred             EEEEccCCCceEEEEECCCCC---eEEeCCC--CCCCCceECCCCCEEEEE
Confidence            7765432  457788875432   2222211  111235678889754444

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.57  E-value=0.00015  Score=70.04  Aligned_cols=160  Identities=11%  Similarity=0.012  Sum_probs=90.0

Q ss_pred             EEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCCC---cEEEEcC-CC-eEEEcCCcCCcccEEEccCCc-EE
Q 018474           74 WVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEK---GLLKVTE-EG-VEAIVPDASFTNDVIAASDGT-LY  146 (355)
Q Consensus        74 ~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~~---gl~~~~~-~g-~~~~~~~~~~~~~l~~d~dG~-ly  146 (355)
                      .|+..|......+.+........ ...+.+||+ |+++...+   .|+.++. +| .+.+...........++|||+ |+
T Consensus       199 ~l~i~d~dG~~~~~l~~~~~~~~-~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La  277 (448)
T PRK04792        199 QLMIADYDGYNEQMLLRSPEPLM-SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLA  277 (448)
T ss_pred             EEEEEeCCCCCceEeecCCCccc-CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEE
Confidence            44445553333333333223334 677888986 44333222   4888884 56 555543223344678999994 76


Q ss_pred             EEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCC--CCeEEEEEeCCCCC
Q 018474          147 FTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESW--KFRCRRYWLKGDRA  224 (355)
Q Consensus       147 ~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~--~~~i~~~~~~~~~~  224 (355)
                      ++...               .....||.+|.++++.+.+..........+++|||+.++++...  ...|+++++++...
T Consensus       278 ~~~~~---------------~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~  342 (448)
T PRK04792        278 LVLSK---------------DGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV  342 (448)
T ss_pred             EEEeC---------------CCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence            65322               11236999999888877665443344567899999988776543  34688888764332


Q ss_pred             cceeEecccCCCCcCceEECCCCCEEEEe
Q 018474          225 GILDAFIENLPGGPDNINLAPDGSFWIGL  253 (355)
Q Consensus       225 ~~~~~~~~~~~g~p~~i~~d~~G~lwv~~  253 (355)
                         +.+. ..........+++||+..+-.
T Consensus       343 ---~~Lt-~~g~~~~~~~~SpDG~~l~~~  367 (448)
T PRK04792        343 ---SRLT-FEGEQNLGGSITPDGRSMIMV  367 (448)
T ss_pred             ---EEEe-cCCCCCcCeeECCCCCEEEEE
Confidence               2121 011112335678888744333

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.56  E-value=0.00018  Score=69.02  Aligned_cols=160  Identities=11%  Similarity=0.086  Sum_probs=91.0

Q ss_pred             EEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCC---CcEEEEc-CCC-eEEEcCCcCCcccEEEccCC-cEE
Q 018474           74 WVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNE---KGLLKVT-EEG-VEAIVPDASFTNDVIAASDG-TLY  146 (355)
Q Consensus        74 ~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~---~gl~~~~-~~g-~~~~~~~~~~~~~l~~d~dG-~ly  146 (355)
                      +|+..|...+..+.+........ ..++.+||+ |.+....   ..++.++ .+| .+.+........+..++||| .|+
T Consensus       180 ~l~~~d~dg~~~~~lt~~~~~~~-~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La  258 (429)
T PRK03629        180 ELRVSDYDGYNQFVVHRSPQPLM-SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLA  258 (429)
T ss_pred             eEEEEcCCCCCCEEeecCCCcee-eeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEE
Confidence            45555543333333333222344 678889996 3333221   2477777 356 55554333345568999999 476


Q ss_pred             EEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCC--CCeEEEEEeCCCCC
Q 018474          147 FTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESW--KFRCRRYWLKGDRA  224 (355)
Q Consensus       147 ~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~--~~~i~~~~~~~~~~  224 (355)
                      ++...               .....||.+|.++++.+.+..........+++|||+.++++...  ...|+++++++...
T Consensus       259 ~~~~~---------------~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~  323 (429)
T PRK03629        259 FALSK---------------TGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP  323 (429)
T ss_pred             EEEcC---------------CCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe
Confidence            65332               11235999999888877665444445567899999977665433  23688888765322


Q ss_pred             cceeEecccCCCCcCceEECCCCCEEEEe
Q 018474          225 GILDAFIENLPGGPDNINLAPDGSFWIGL  253 (355)
Q Consensus       225 ~~~~~~~~~~~g~p~~i~~d~~G~lwv~~  253 (355)
                         +.+. ...+......+++||+..+..
T Consensus       324 ---~~lt-~~~~~~~~~~~SpDG~~Ia~~  348 (429)
T PRK03629        324 ---QRIT-WEGSQNQDADVSSDGKFMVMV  348 (429)
T ss_pred             ---EEee-cCCCCccCEEECCCCCEEEEE
Confidence               2221 111223346778888754433

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=98.55  E-value=1.1e-05  Score=72.80  Aligned_cols=180  Identities=19%  Similarity=0.241  Sum_probs=104.2

Q ss_pred             eEEEeeCCCeEEEEecC-------------CEEEEEEcCCCeeEE-eecc------CCCcccCeEECC-C-----CCEEE
Q 018474           56 DVSVVVSKGALYTATRD-------------GWVKYFILHNETLVN-WKHI------DSQSLLGLTTTK-D-----GGVIL  109 (355)
Q Consensus        56 ~i~~d~~~g~l~~~~~~-------------g~i~~~~~~~g~~~~-~~~~------~~~p~~gl~~d~-~-----g~L~v  109 (355)
                      .+.+| +.++||+-...             -+|+.+|.++++..+ +...      ..... .+++|. +     +..|+
T Consensus         5 ~v~iD-~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~ln-dl~VD~~~~~~~~~~aYI   82 (287)
T PF03022_consen    5 RVQID-ECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLN-DLVVDVRDGNCDDGFAYI   82 (287)
T ss_dssp             EEEE--TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEE-EEEEECTTTTS-SEEEEE
T ss_pred             EEEEc-CCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccc-eEEEEccCCCCcceEEEE
Confidence            57888 78899985421             289999999887543 2211      12344 577774 2     46899


Q ss_pred             EeCC-CcEEEEc-CCC--eEEEcCCc-------------------CCcccEEEcc---CC-cEEEEeCCCCCCCcccccc
Q 018474          110 CDNE-KGLLKVT-EEG--VEAIVPDA-------------------SFTNDVIAAS---DG-TLYFTVASTKYTPTDFYKD  162 (355)
Q Consensus       110 ~~~~-~gl~~~~-~~g--~~~~~~~~-------------------~~~~~l~~d~---dG-~ly~~d~~~~~~~~~~~~~  162 (355)
                      +|.. .||+.++ .+|  .+.+....                   ..+.+++.++   +| .||+.-.+           
T Consensus        83 tD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~ls-----------  151 (287)
T PF03022_consen   83 TDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLS-----------  151 (287)
T ss_dssp             EETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-----------
T ss_pred             eCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCC-----------
Confidence            9987 5799999 566  33332211                   2234444433   33 46665432           


Q ss_pred             ccccCCCCeEEEEeC------CC-------CeEEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCC-Cccee
Q 018474          163 MAEGKPYGQLRKYDP------KL-------KETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDR-AGILD  228 (355)
Q Consensus       163 ~~~~~~~g~l~~~dp------~~-------~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~-~~~~~  228 (355)
                            ...+|+...      ..       .+++.+........|++++++|. +|+++...+.|.+++.++.- ..+.+
T Consensus       152 ------s~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~-ly~~~~~~~aI~~w~~~~~~~~~~~~  224 (287)
T PF03022_consen  152 ------SRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGN-LYFTDVEQNAIGCWDPDGPYTPENFE  224 (287)
T ss_dssp             -------SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTE-EEEEECCCTEEEEEETTTSB-GCCEE
T ss_pred             ------CCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCc-EEEecCCCCeEEEEeCCCCcCccchh
Confidence                  112333321      00       01222222223567999999886 99999999999999987632 22444


Q ss_pred             EecccC--CCCcCceEECC--CCCEEEEeec
Q 018474          229 AFIENL--PGGPDNINLAP--DGSFWIGLIK  255 (355)
Q Consensus       229 ~~~~~~--~g~p~~i~~d~--~G~lwv~~~~  255 (355)
                      .++...  --.|+++.++.  +|.+|+-+++
T Consensus       225 ~l~~d~~~l~~pd~~~i~~~~~g~L~v~snr  255 (287)
T PF03022_consen  225 ILAQDPRTLQWPDGLKIDPEGDGYLWVLSNR  255 (287)
T ss_dssp             EEEE-CC-GSSEEEEEE-T--TS-EEEEE-S
T ss_pred             eeEEcCceeeccceeeeccccCceEEEEECc
Confidence            444322  24799999999  9999999876

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.55  E-value=8.4e-05  Score=72.32  Aligned_cols=187  Identities=14%  Similarity=0.197  Sum_probs=128.3

Q ss_pred             CCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCe-eEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEc--CCC--
Q 018474           49 GCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNET-LVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG--  123 (355)
Q Consensus        49 ~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~-~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~--~~g--  123 (355)
                      |....-.+++..|++..+..|..||+|..+|...|- +..|........ ++.+...|+..++.+-+|-+|..  +..  
T Consensus       348 gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt-~v~f~~~g~~llssSLDGtVRAwDlkRYrN  426 (893)
T KOG0291|consen  348 GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVT-AVQFTARGNVLLSSSLDGTVRAWDLKRYRN  426 (893)
T ss_pred             ccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceE-EEEEEecCCEEEEeecCCeEEeeeecccce
Confidence            556777889999777777788889999999986664 334443334455 88898999988887777766554  332  


Q ss_pred             eEEEcCCc-CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecccccc-ccEEEeCCC
Q 018474          124 VEAIVPDA-SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFA-NGIALSKNE  201 (355)
Q Consensus       124 ~~~~~~~~-~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~p-ngi~~~~dg  201 (355)
                      .+++..+. .....+++|+.|.|.++.+..                .=.++.|+-+||+...+..+...| .++++++++
T Consensus       427 fRTft~P~p~QfscvavD~sGelV~AG~~d----------------~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~  490 (893)
T KOG0291|consen  427 FRTFTSPEPIQFSCVAVDPSGELVCAGAQD----------------SFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDG  490 (893)
T ss_pred             eeeecCCCceeeeEEEEcCCCCEEEeeccc----------------eEEEEEEEeecCeeeehhcCCCCcceeeEEcccc
Confidence            66665442 566788999999888775431                115888898899887666666555 578999999


Q ss_pred             CEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCC-EEEEeecC
Q 018474          202 DFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGS-FWIGLIKM  256 (355)
Q Consensus       202 ~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~~~  256 (355)
                      . ++++.++.+.|..|++=.. -++.+++.  .....-++.+.++|+ +=|++..+
T Consensus       491 ~-~LaS~SWDkTVRiW~if~s-~~~vEtl~--i~sdvl~vsfrPdG~elaVaTldg  542 (893)
T KOG0291|consen  491 S-LLASGSWDKTVRIWDIFSS-SGTVETLE--IRSDVLAVSFRPDGKELAVATLDG  542 (893)
T ss_pred             C-eEEeccccceEEEEEeecc-CceeeeEe--eccceeEEEEcCCCCeEEEEEecc
Confidence            8 6777788889998887321 12333331  111234566777784 77777663

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.53  E-value=0.00013  Score=69.73  Aligned_cols=178  Identities=12%  Similarity=0.059  Sum_probs=106.4

Q ss_pred             eEEEeeCCCeEEEEecC---CEEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCCC---cEEEEcC-CC-eEE
Q 018474           56 DVSVVVSKGALYTATRD---GWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEK---GLLKVTE-EG-VEA  126 (355)
Q Consensus        56 ~i~~d~~~g~l~~~~~~---g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~~---gl~~~~~-~g-~~~  126 (355)
                      +..+.+++..++.....   ..|+.++..+++.+.+....+... ..++.++|+ |+++....   .|+.++. ++ .+.
T Consensus       194 ~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~-~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~  272 (417)
T TIGR02800       194 SPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNG-APAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR  272 (417)
T ss_pred             cccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCcc-ceEECCCCCEEEEEECCCCCccEEEEECCCCCEEE
Confidence            34566566666655432   478999988887666554444455 788888886 65554322   4888884 55 555


Q ss_pred             EcCCcCCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEE
Q 018474          127 IVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVV  205 (355)
Q Consensus       127 ~~~~~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~  205 (355)
                      +...........+++||+ |+++...               .....+|.+|.++++.+.+..........+++|||+.++
T Consensus       273 l~~~~~~~~~~~~s~dg~~l~~~s~~---------------~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~  337 (417)
T TIGR02800       273 LTNGPGIDTEPSWSPDGKSIAFTSDR---------------GGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIA  337 (417)
T ss_pred             CCCCCCCCCCEEECCCCCEEEEEECC---------------CCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEE
Confidence            543322233557788884 6555322               112369999988887766554444455678999999888


Q ss_pred             EEeCCC--CeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCC-EEEEee
Q 018474          206 VCESWK--FRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGS-FWIGLI  254 (355)
Q Consensus       206 v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~  254 (355)
                      ++....  .+|+.+++++.   ..+.+.+  ........+.++|+ ++++..
T Consensus       338 ~~~~~~~~~~i~~~d~~~~---~~~~l~~--~~~~~~p~~spdg~~l~~~~~  384 (417)
T TIGR02800       338 FVHREGGGFNIAVMDLDGG---GERVLTD--TGLDESPSFAPNGRMILYATT  384 (417)
T ss_pred             EEEccCCceEEEEEeCCCC---CeEEccC--CCCCCCceECCCCCEEEEEEe
Confidence            876543  36888887542   2222221  11123345677776 444443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.51  E-value=0.00019  Score=68.98  Aligned_cols=158  Identities=13%  Similarity=0.067  Sum_probs=90.0

Q ss_pred             EEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCCC---cEEEEc-CCC-eEEEcCCcCCcccEEEccCC-cEE
Q 018474           74 WVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEK---GLLKVT-EEG-VEAIVPDASFTNDVIAASDG-TLY  146 (355)
Q Consensus        74 ~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~~---gl~~~~-~~g-~~~~~~~~~~~~~l~~d~dG-~ly  146 (355)
                      .|+.+|...+..+.+........ +.++.++|+ |+++....   .++.++ .+| .+.+...........+++|| .|+
T Consensus       185 ~l~i~D~~g~~~~~lt~~~~~v~-~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~  263 (433)
T PRK04922        185 ALQVADSDGYNPQTILRSAEPIL-SPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLA  263 (433)
T ss_pred             EEEEECCCCCCceEeecCCCccc-cccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEE
Confidence            35555553333333333222344 677888886 54444322   388888 456 55554332333467899999 466


Q ss_pred             EEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCC--CeEEEEEeCCCCC
Q 018474          147 FTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK--FRCRRYWLKGDRA  224 (355)
Q Consensus       147 ~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~--~~i~~~~~~~~~~  224 (355)
                      ++.+.               .....||.+|.++++.+.+..........+++|||+.++++....  ..|+.+++++...
T Consensus       264 ~~~s~---------------~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~  328 (433)
T PRK04922        264 LTLSR---------------DGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA  328 (433)
T ss_pred             EEEeC---------------CCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence            65322               112369999998888776654433334578999999887765432  3588888754322


Q ss_pred             cceeEecccCCCCcCceEECCCCCEEE
Q 018474          225 GILDAFIENLPGGPDNINLAPDGSFWI  251 (355)
Q Consensus       225 ~~~~~~~~~~~g~p~~i~~d~~G~lwv  251 (355)
                         +.+. ..........++++|+..+
T Consensus       329 ---~~lt-~~g~~~~~~~~SpDG~~Ia  351 (433)
T PRK04922        329 ---ERLT-FQGNYNARASVSPDGKKIA  351 (433)
T ss_pred             ---EEee-cCCCCccCEEECCCCCEEE
Confidence               2121 1112233567888887433

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.51  E-value=5.8e-05  Score=70.72  Aligned_cols=160  Identities=16%  Similarity=0.156  Sum_probs=99.1

Q ss_pred             eEecCCCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCC-CcEEEEc-
Q 018474           44 TKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNE-KGLLKVT-  120 (355)
Q Consensus        44 ~~~~~~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~-~gl~~~~-  120 (355)
                      .+++.+. .-+..+++.++++.+|+++.+|.|..+|..+++...-...+..|. ++++.++|+ +|++... +.+..+| 
T Consensus        30 ~~i~~~~-~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~-~i~~s~DG~~~~v~n~~~~~v~v~D~  107 (369)
T PF02239_consen   30 ARIPTGG-APHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPR-GIAVSPDGKYVYVANYEPGTVSVIDA  107 (369)
T ss_dssp             EEEE-ST-TEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEE-EEEE--TTTEEEEEEEETTEEEEEET
T ss_pred             EEEcCCC-CceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcc-eEEEcCCCCEEEEEecCCCceeEecc
Confidence            4555542 224556677667889999999999999998888665556677899 999999997 6667654 4566777 


Q ss_pred             CCC--eEEEcCCc-------CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCe--EEEeeccc
Q 018474          121 EEG--VEAIVPDA-------SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE--TTVLHEGF  189 (355)
Q Consensus       121 ~~g--~~~~~~~~-------~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~--~~~~~~~~  189 (355)
                      .+.  ++.+....       ..+.++..++.+..|+.+..                ..+.++..|....+  ........
T Consensus       108 ~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk----------------d~~~I~vVdy~d~~~~~~~~i~~g  171 (369)
T PF02239_consen  108 ETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLK----------------DTGEIWVVDYSDPKNLKVTTIKVG  171 (369)
T ss_dssp             TT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEET----------------TTTEEEEEETTTSSCEEEEEEE--
T ss_pred             ccccceeecccccccccccCCCceeEEecCCCCEEEEEEc----------------cCCeEEEEEeccccccceeeeccc
Confidence            444  55554321       24456666666665544311                14577777643322  12223344


Q ss_pred             cccccEEEeCCCCEEEEEeCCCCeEEEEEeCC
Q 018474          190 YFANGIALSKNEDFVVVCESWKFRCRRYWLKG  221 (355)
Q Consensus       190 ~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~  221 (355)
                      .+|.+..++|++++++++....+.|..++.+.
T Consensus       172 ~~~~D~~~dpdgry~~va~~~sn~i~viD~~~  203 (369)
T PF02239_consen  172 RFPHDGGFDPDGRYFLVAANGSNKIAVIDTKT  203 (369)
T ss_dssp             TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTT
T ss_pred             ccccccccCcccceeeecccccceeEEEeecc
Confidence            67889999999999999887888999998643

...

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.50  E-value=0.00021  Score=68.17  Aligned_cols=202  Identities=10%  Similarity=0.001  Sum_probs=122.3

Q ss_pred             eEEEeeCCCe-EEEEec---CCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCC---CcEEEEc-CCC-eE
Q 018474           56 DVSVVVSKGA-LYTATR---DGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNE---KGLLKVT-EEG-VE  125 (355)
Q Consensus        56 ~i~~d~~~g~-l~~~~~---~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~---~gl~~~~-~~g-~~  125 (355)
                      ...+.|+++. +|..+.   +..|+.+|..+|+.+.+....+... ...+.+||+ |.+....   ..|+.++ .++ .+
T Consensus       192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~-~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~  270 (419)
T PRK04043        192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLV-VSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT  270 (419)
T ss_pred             eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEE-eeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE
Confidence            4567766653 665433   3579999998898877765433333 456778885 5444322   3588888 456 66


Q ss_pred             EEcCCcCCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEE
Q 018474          126 AIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFV  204 (355)
Q Consensus       126 ~~~~~~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l  204 (355)
                      .+......-....++||| .|+|+...               .....||++|.++++.+.+..... .+ ..++|||+.+
T Consensus       271 ~LT~~~~~d~~p~~SPDG~~I~F~Sdr---------------~g~~~Iy~~dl~~g~~~rlt~~g~-~~-~~~SPDG~~I  333 (419)
T PRK04043        271 QITNYPGIDVNGNFVEDDKRIVFVSDR---------------LGYPNIFMKKLNSGSVEQVVFHGK-NN-SSVSTYKNYI  333 (419)
T ss_pred             EcccCCCccCccEECCCCCEEEEEECC---------------CCCceEEEEECCCCCeEeCccCCC-cC-ceECCCCCEE
Confidence            665432212234689999 68887543               112379999998888865543221 12 4899999988


Q ss_pred             EEEeCCC--------CeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCC-EEEEeecCCchhhHhhhcchhHHHHHH
Q 018474          205 VVCESWK--------FRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGS-FWIGLIKMNQTGVRAIQKCREKWELLD  275 (355)
Q Consensus       205 ~v~~~~~--------~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~  275 (355)
                      .++....        ..|+.+++++..   .+.+...  +.-....+.+||+ +.+++..                    
T Consensus       334 a~~~~~~~~~~~~~~~~I~v~d~~~g~---~~~LT~~--~~~~~p~~SPDG~~I~f~~~~--------------------  388 (419)
T PRK04043        334 VYSSRETNNEFGKNTFNLYLISTNSDY---IRRLTAN--GVNQFPRFSSDGGSIMFIKYL--------------------  388 (419)
T ss_pred             EEEEcCCCcccCCCCcEEEEEECCCCC---eEECCCC--CCcCCeEECCCCCEEEEEEcc--------------------
Confidence            7776432        478888876532   2222211  1112356788886 5454433                    


Q ss_pred             hccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCC
Q 018474          276 AYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDAT  315 (355)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~  315 (355)
                                    .....+..++. +|.....+....|.
T Consensus       389 --------------~~~~~L~~~~l-~g~~~~~l~~~~g~  413 (419)
T PRK04043        389 --------------GNQSALGIIRL-NYNKSFLFPLKVGK  413 (419)
T ss_pred             --------------CCcEEEEEEec-CCCeeEEeecCCCc
Confidence                          12246888888 88776666655553

>PRK01742 tolB translocation protein TolB; Provisional

Probab=98.46  E-value=0.00015  Score=69.56  Aligned_cols=176  Identities=11%  Similarity=0.087  Sum_probs=106.8

Q ss_pred             CceEEEeeCCCeEEEEec---CCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCCCc---EEEEcC-CC-e
Q 018474           54 PEDVSVVVSKGALYTATR---DGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEKG---LLKVTE-EG-V  124 (355)
Q Consensus        54 p~~i~~d~~~g~l~~~~~---~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~~g---l~~~~~-~g-~  124 (355)
                      -.++.+.|++..+...+.   +..|+.+|..+++.+.+....+... ..++.+||+ |.++....|   |+.++. ++ .
T Consensus       206 v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~-~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~  284 (429)
T PRK01742        206 LMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNG-APAFSPDGSRLAFASSKDGVLNIYVMGANGGTP  284 (429)
T ss_pred             cccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccC-ceeECCCCCEEEEEEecCCcEEEEEEECCCCCe
Confidence            356778876766655443   2469999988887665544334445 678899997 555433333   777774 55 6


Q ss_pred             EEEcCCcCCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCE
Q 018474          125 EAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDF  203 (355)
Q Consensus       125 ~~~~~~~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~  203 (355)
                      +.+........+..+++||+ |+++...               ...-.+|.++..++..+.+. ...  ...+++|||+.
T Consensus       285 ~~lt~~~~~~~~~~wSpDG~~i~f~s~~---------------~g~~~I~~~~~~~~~~~~l~-~~~--~~~~~SpDG~~  346 (429)
T PRK01742        285 SQLTSGAGNNTEPSWSPDGQSILFTSDR---------------SGSPQVYRMSASGGGASLVG-GRG--YSAQISADGKT  346 (429)
T ss_pred             EeeccCCCCcCCEEECCCCCEEEEEECC---------------CCCceEEEEECCCCCeEEec-CCC--CCccCCCCCCE
Confidence            66554434466789999995 6665322               01236888887766555442 211  34679999998


Q ss_pred             EEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474          204 VVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       204 l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      ++++..  .+++++++.+..   .+.+....  ......++++|++.+....
T Consensus       347 ia~~~~--~~i~~~Dl~~g~---~~~lt~~~--~~~~~~~sPdG~~i~~~s~  391 (429)
T PRK01742        347 LVMING--DNVVKQDLTSGS---TEVLSSTF--LDESPSISPNGIMIIYSST  391 (429)
T ss_pred             EEEEcC--CCEEEEECCCCC---eEEecCCC--CCCCceECCCCCEEEEEEc
Confidence            877654  578888875432   22221111  1234567899986665543

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=98.45  E-value=2.8e-05  Score=73.87  Aligned_cols=116  Identities=16%  Similarity=0.290  Sum_probs=78.1

Q ss_pred             eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee-------c-cccccccE
Q 018474          124 VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-------E-GFYFANGI  195 (355)
Q Consensus       124 ~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~-------~-~~~~pngi  195 (355)
                      +++++..+..|.+|++.+||++||+...                 .|+|+++++.++..+.+.       . +....-||
T Consensus        22 ~~~va~GL~~Pw~maflPDG~llVtER~-----------------~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlgl   84 (454)
T TIGR03606        22 KKVLLSGLNKPWALLWGPDNQLWVTERA-----------------TGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGL   84 (454)
T ss_pred             EEEEECCCCCceEEEEcCCCeEEEEEec-----------------CCEEEEEeCCCCceeeeecCCceeccCCCCceeeE
Confidence            4556666689999999999999998643                 468888887655433221       1 23456789


Q ss_pred             EEeCCC------CEEEEEeCC---------CCeEEEEEeCC--CCCcceeEecccCCCC----cCceEECCCCCEEEEee
Q 018474          196 ALSKNE------DFVVVCESW---------KFRCRRYWLKG--DRAGILDAFIENLPGG----PDNINLAPDGSFWIGLI  254 (355)
Q Consensus       196 ~~~~dg------~~l~v~~~~---------~~~i~~~~~~~--~~~~~~~~~~~~~~g~----p~~i~~d~~G~lwv~~~  254 (355)
                      +++||-      +++|++.+.         ..+|.|+.++.  ......+.+...+|..    -..|++++||.|||++.
T Consensus        85 al~PdF~~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~G  164 (454)
T TIGR03606        85 ALHPDFMQEKGNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIG  164 (454)
T ss_pred             EECCCccccCCCcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEEC
Confidence            999873      478998632         46899998753  2233333444344321    23478999999999997


Q ss_pred             cC
Q 018474          255 KM  256 (355)
Q Consensus       255 ~~  256 (355)
                      ..
T Consensus       165 D~  166 (454)
T TIGR03606       165 EQ  166 (454)
T ss_pred             CC
Confidence            75

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.45  E-value=0.00016  Score=68.68  Aligned_cols=64  Identities=20%  Similarity=0.299  Sum_probs=41.8

Q ss_pred             EEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEcC-CC
Q 018474           57 VSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE-EG  123 (355)
Q Consensus        57 i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~-~g  123 (355)
                      ++.+  ++.+|+++.+|.++.+|.++|+..--....+.+.....+ .++.+|+++..+.++.+|. +|
T Consensus       116 ~~v~--~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v-~~~~v~v~~~~g~l~ald~~tG  180 (394)
T PRK11138        116 VTVA--GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV-SDGLVLVHTSNGMLQALNESDG  180 (394)
T ss_pred             cEEE--CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE-ECCEEEEECCCCEEEEEEccCC
Confidence            4444  678999988999999999899753222222222202223 2678998876666899994 77

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=98.44  E-value=3.3e-05  Score=73.42  Aligned_cols=172  Identities=13%  Similarity=0.129  Sum_probs=107.9

Q ss_pred             ceEecCCCCCCCceEEEeeCCCeEEEEec-CCEEEEEEcCCCeeEEee-------c-cCCCcccCeEECCC-------CC
Q 018474           43 LTKLGEGCVNHPEDVSVVVSKGALYTATR-DGWVKYFILHNETLVNWK-------H-IDSQSLLGLTTTKD-------GG  106 (355)
Q Consensus        43 ~~~~~~~~~~~p~~i~~d~~~g~l~~~~~-~g~i~~~~~~~g~~~~~~-------~-~~~~p~~gl~~d~~-------g~  106 (355)
                      .+.+..+ +..|.+|++. .+|.+|++.. .|+|+++++.++..+.+.       . ..+... +|+++++       +.
T Consensus        22 ~~~va~G-L~~Pw~mafl-PDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLl-glal~PdF~~~~~n~~   98 (454)
T TIGR03606        22 KKVLLSG-LNKPWALLWG-PDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLL-GLALHPDFMQEKGNPY   98 (454)
T ss_pred             EEEEECC-CCCceEEEEc-CCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCcee-eEEECCCccccCCCcE
Confidence            3556665 8999999999 5778999887 599999987655433221       1 123467 8888754       36


Q ss_pred             EEEEeC----------CCcEEEEc--CC-C----eEEEc-CCc----CCcccEEEccCCcEEEEeCCCCCC--C----cc
Q 018474          107 VILCDN----------EKGLLKVT--EE-G----VEAIV-PDA----SFTNDVIAASDGTLYFTVASTKYT--P----TD  158 (355)
Q Consensus       107 L~v~~~----------~~gl~~~~--~~-g----~~~~~-~~~----~~~~~l~~d~dG~ly~~d~~~~~~--~----~~  158 (355)
                      ||++-.          ...|.|+.  .. .    .+.+. ...    .+-..|++++||.||++.......  .    ..
T Consensus        99 lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g~~~~~n~~~~~  178 (454)
T TIGR03606        99 VYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQGRNQGANFFLPN  178 (454)
T ss_pred             EEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCCCCCCcccccCcc
Confidence            898741          23466664  21 1    22222 111    334568999999999987543110  0    00


Q ss_pred             cccc------c---cccCCCCeEEEEeCCCC-----------eEEEeeccccccccEEEeCCCCEEEEEeCCC---CeEE
Q 018474          159 FYKD------M---AEGKPYGQLRKYDPKLK-----------ETTVLHEGFYFANGIALSKNEDFVVVCESWK---FRCR  215 (355)
Q Consensus       159 ~~~~------~---~~~~~~g~l~~~dp~~~-----------~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~---~~i~  215 (355)
                      ....      +   -.....|.|+|+|+++.           .-+.++.++.+|.|++++|+|+ ||++|.+.   ..|.
T Consensus       179 ~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp~G~-Lw~~e~Gp~~~DEiN  257 (454)
T TIGR03606       179 QAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTPDGT-LYASEQGPNSDDELN  257 (454)
T ss_pred             hhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECCCCC-EEEEecCCCCCcEEE
Confidence            0000      0   01133678999998743           1256678899999999999876 99998764   3455


Q ss_pred             EEE
Q 018474          216 RYW  218 (355)
Q Consensus       216 ~~~  218 (355)
                      ++.
T Consensus       258 ~I~  260 (454)
T TIGR03606       258 IIV  260 (454)
T ss_pred             Eec
Confidence            543

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.44  E-value=0.00042  Score=66.50  Aligned_cols=135  Identities=13%  Similarity=0.053  Sum_probs=78.4

Q ss_pred             CeEECCCCC-EEEEeCCC---cEEEEcC-CC-eEEEcCCcCCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCC
Q 018474           98 GLTTTKDGG-VILCDNEK---GLLKVTE-EG-VEAIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYG  170 (355)
Q Consensus        98 gl~~d~~g~-L~v~~~~~---gl~~~~~-~g-~~~~~~~~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g  170 (355)
                      ..++.++|+ |+++....   .|+.++. +| .+.+...........++||| .|.++...               ....
T Consensus       200 ~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~---------------~g~~  264 (427)
T PRK02889        200 SPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSR---------------DGNS  264 (427)
T ss_pred             cceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEcc---------------CCCc
Confidence            677888886 44443322   3888884 56 55554332344567899999 56665322               1123


Q ss_pred             eEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCC--CCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCC
Q 018474          171 QLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESW--KFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGS  248 (355)
Q Consensus       171 ~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~  248 (355)
                      .+|.+|.++++.+.+..........+++|||+.++++...  ...|+.++.++...   +.+. ..........++++|+
T Consensus       265 ~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~---~~lt-~~g~~~~~~~~SpDG~  340 (427)
T PRK02889        265 QIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA---QRVT-FTGSYNTSPRISPDGK  340 (427)
T ss_pred             eEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce---EEEe-cCCCCcCceEECCCCC
Confidence            6999998777766554333233456899999988776432  33577777654322   1111 1111223456788887


Q ss_pred             EEE
Q 018474          249 FWI  251 (355)
Q Consensus       249 lwv  251 (355)
                      ..+
T Consensus       341 ~Ia  343 (427)
T PRK02889        341 LLA  343 (427)
T ss_pred             EEE
Confidence            543

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.43  E-value=0.00089  Score=63.56  Aligned_cols=138  Identities=17%  Similarity=0.132  Sum_probs=78.9

Q ss_pred             EEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeecc-CC-----------CcccCeEECCCCCEEEEeCCCcEEEEc-CCC
Q 018474           57 VSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI-DS-----------QSLLGLTTTKDGGVILCDNEKGLLKVT-EEG  123 (355)
Q Consensus        57 i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~-~~-----------~p~~gl~~d~~g~L~v~~~~~gl~~~~-~~g  123 (355)
                      .+++  ++.+|+.+.+|.++.+|.++|+.. |... ..           ....+.+.+ ++++|+++..+.++.+| ++|
T Consensus        65 Pvv~--~~~vy~~~~~g~l~ald~~tG~~~-W~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~v~v~~~~g~l~ald~~tG  140 (394)
T PRK11138         65 PAVA--YNKVYAADRAGLVKALDADTGKEI-WSVDLSEKDGWFSKNKSALLSGGVTVA-GGKVYIGSEKGQVYALNAEDG  140 (394)
T ss_pred             cEEE--CCEEEEECCCCeEEEEECCCCcEe-eEEcCCCcccccccccccccccccEEE-CCEEEEEcCCCEEEEEECCCC
Confidence            3454  779999999999999999888743 3211 11           111034443 67899998766799999 477


Q ss_pred             -eEEEcCCcCCcc-cEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecccccc-------cc
Q 018474          124 -VEAIVPDASFTN-DVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFA-------NG  194 (355)
Q Consensus       124 -~~~~~~~~~~~~-~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~p-------ng  194 (355)
                       ..--......+. ..++ .+|.+|+.+.                  .+.++.+|+++|+...-.+.. .|       ..
T Consensus       141 ~~~W~~~~~~~~~ssP~v-~~~~v~v~~~------------------~g~l~ald~~tG~~~W~~~~~-~~~~~~~~~~s  200 (394)
T PRK11138        141 EVAWQTKVAGEALSRPVV-SDGLVLVHTS------------------NGMLQALNESDGAVKWTVNLD-VPSLTLRGESA  200 (394)
T ss_pred             CCcccccCCCceecCCEE-ECCEEEEECC------------------CCEEEEEEccCCCEeeeecCC-CCcccccCCCC
Confidence             322111101111 1122 2567877632                  457999999888765433211 11       01


Q ss_pred             EEEeCCCCEEEEEeCCCCeEEEEEeCC
Q 018474          195 IALSKNEDFVVVCESWKFRCRRYWLKG  221 (355)
Q Consensus       195 i~~~~dg~~l~v~~~~~~~i~~~~~~~  221 (355)
                      -++. + ..+|+.. ..+.++.++.+.
T Consensus       201 P~v~-~-~~v~~~~-~~g~v~a~d~~~  224 (394)
T PRK11138        201 PATA-F-GGAIVGG-DNGRVSAVLMEQ  224 (394)
T ss_pred             CEEE-C-CEEEEEc-CCCEEEEEEccC
Confidence            1222 2 3466654 567888888754

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=98.43  E-value=0.00038  Score=65.28  Aligned_cols=189  Identities=17%  Similarity=0.181  Sum_probs=124.9

Q ss_pred             EecCCCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeec--cCCCcccCeEECCCCCEEEEeCCCcEEEEc-C
Q 018474           45 KLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH--IDSQSLLGLTTTKDGGVILCDNEKGLLKVT-E  121 (355)
Q Consensus        45 ~~~~~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~--~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~-~  121 (355)
                      .+.-|..+.-.+++..+++..+|.++++|.|..++..+|...++..  ..+.+. +|+.++.+.++-..+.+-|.+++ +
T Consensus       314 ~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~-~~~~~~~~~~~t~g~Dd~l~~~~~~  392 (603)
T KOG0318|consen  314 KVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIK-GMAASESGELFTIGWDDTLRVISLK  392 (603)
T ss_pred             heecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEE-EEeecCCCcEEEEecCCeEEEEecc
Confidence            3445777888899999888889999999999999987776555421  234577 89888889999988887666665 3


Q ss_pred             -CC-eEEE-cCCcCCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEE
Q 018474          122 -EG-VEAI-VPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIAL  197 (355)
Q Consensus       122 -~g-~~~~-~~~~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~  197 (355)
                       .+ -+.. ..-...|-++++.++| .+.++.-.                   .+..+.-.++ ... ..-...+.++|+
T Consensus       393 ~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~-------------------~iv~l~~~~~-~~~-~~~~y~~s~vAv  451 (603)
T KOG0318|consen  393 DNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACIS-------------------DIVLLQDQTK-VSS-IPIGYESSAVAV  451 (603)
T ss_pred             cCcccccceeecCCCceeEEEcCCCCEEEEEecC-------------------cEEEEecCCc-cee-eccccccceEEE
Confidence             33 2211 1111568899999887 44444322                   2322221122 111 112345789999


Q ss_pred             eCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeecCC
Q 018474          198 SKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMN  257 (355)
Q Consensus       198 ~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~  257 (355)
                      +||++.+.+.. ..+.|+.|.++|....+..... ...+-+.-+++++||.+++++-..|
T Consensus       452 ~~~~~~vaVGG-~Dgkvhvysl~g~~l~ee~~~~-~h~a~iT~vaySpd~~yla~~Da~r  509 (603)
T KOG0318|consen  452 SPDGSEVAVGG-QDGKVHVYSLSGDELKEEAKLL-EHRAAITDVAYSPDGAYLAAGDASR  509 (603)
T ss_pred             cCCCCEEEEec-ccceEEEEEecCCcccceeeee-cccCCceEEEECCCCcEEEEeccCC
Confidence            99999776665 4577999999875432221222 3455678899999999998886643

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.42  E-value=0.00016  Score=63.59  Aligned_cols=188  Identities=13%  Similarity=0.145  Sum_probs=104.7

Q ss_pred             CCCCCCceEEEeeCCCeEEEEe-cCCEEEEEEcCCCeeE-EeeccC-CCcccCeEECCCCCEEEEeC-CCcEEEEc--C-
Q 018474           49 GCVNHPEDVSVVVSKGALYTAT-RDGWVKYFILHNETLV-NWKHID-SQSLLGLTTTKDGGVILCDN-EKGLLKVT--E-  121 (355)
Q Consensus        49 ~~~~~p~~i~~d~~~g~l~~~~-~~g~i~~~~~~~g~~~-~~~~~~-~~p~~gl~~d~~g~L~v~~~-~~gl~~~~--~-  121 (355)
                      |....+.+|+++++.+.||+.. ..+.|+.++. +|+.. ++...+ +.+- |++.-.+|.+.+++- .+.++.+.  . 
T Consensus        19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~E-gI~y~g~~~~vl~~Er~~~L~~~~~~~~   96 (248)
T PF06977_consen   19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYE-GITYLGNGRYVLSEERDQRLYIFTIDDD   96 (248)
T ss_dssp             T--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEE-EEEE-STTEEEEEETTTTEEEEEEE---
T ss_pred             CccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCce-eEEEECCCEEEEEEcCCCcEEEEEEecc
Confidence            4345699999998788899754 5789999997 56544 333232 4677 999887777777663 34566665  2 


Q ss_pred             CC-e-----EEEcCCc-----CCcccEEEccC-CcEEEEeCCCCCCCccccccccccCCCCeEEEEeC--CCCeEEEee-
Q 018474          122 EG-V-----EAIVPDA-----SFTNDVIAASD-GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDP--KLKETTVLH-  186 (355)
Q Consensus       122 ~g-~-----~~~~~~~-----~~~~~l~~d~d-G~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp--~~~~~~~~~-  186 (355)
                      +. +     +.+.-..     ....+++.|+. +++|+.-..               . -..+|.++.  ......... 
T Consensus        97 ~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~---------------~-P~~l~~~~~~~~~~~~~~~~~  160 (248)
T PF06977_consen   97 TTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKER---------------K-PKRLYEVNGFPGGFDLFVSDD  160 (248)
T ss_dssp             -TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEES---------------S-SEEEEEEESTT-SS--EEEE-
T ss_pred             ccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCC---------------C-ChhhEEEccccCccceeeccc
Confidence            22 2     2222111     45678999986 478876432               1 124555553  122222111 


Q ss_pred             -------ccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCC------CCcCceEECCCCCEEEEe
Q 018474          187 -------EGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLP------GGPDNINLAPDGSFWIGL  253 (355)
Q Consensus       187 -------~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~------g~p~~i~~d~~G~lwv~~  253 (355)
                             .....+.+++++|....+|+-.....+|..++.+|.-.+.. .+.....      ..|-|+++|++|+|||+.
T Consensus       161 ~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~-~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs  239 (248)
T PF06977_consen  161 QDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSL-SLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS  239 (248)
T ss_dssp             HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEE-E-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred             cccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEE-EeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence                   01334789999999888999988889999999766422222 1221111      258899999999999998


Q ss_pred             ec
Q 018474          254 IK  255 (355)
Q Consensus       254 ~~  255 (355)
                      ..
T Consensus       240 Ep  241 (248)
T PF06977_consen  240 EP  241 (248)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.42  E-value=0.0003  Score=68.61  Aligned_cols=190  Identities=13%  Similarity=0.127  Sum_probs=122.5

Q ss_pred             CeEECCCCC-EEEEeCCC-cEEEEc-CCC---eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCe
Q 018474           98 GLTTTKDGG-VILCDNEK-GLLKVT-EEG---VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQ  171 (355)
Q Consensus        98 gl~~d~~g~-L~v~~~~~-gl~~~~-~~g---~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~  171 (355)
                      .+++...|. |-++...- .|..++ ...   +++ ......++.++.+|||.+.+|...                 .|.
T Consensus       312 t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQ-QgH~~~i~~l~YSpDgq~iaTG~e-----------------DgK  373 (893)
T KOG0291|consen  312 TVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQ-QGHSDRITSLAYSPDGQLIATGAE-----------------DGK  373 (893)
T ss_pred             EEEecccCCEEEEcCCccceEEEEEeeccceeeec-cccccceeeEEECCCCcEEEeccC-----------------CCc
Confidence            566665555 33343332 344444 322   222 122367889999999999888544                 567


Q ss_pred             EEEEeCCCC-eEEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEE
Q 018474          172 LRKYDPKLK-ETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFW  250 (355)
Q Consensus       172 l~~~dp~~~-~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lw  250 (355)
                      +-.||..++ -+.++.+.-..-.++.++..|+ .+++.+..++|..+|+.  +...+++|....|..-.-++.|+.|.+.
T Consensus       374 VKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~-~llssSLDGtVRAwDlk--RYrNfRTft~P~p~QfscvavD~sGelV  450 (893)
T KOG0291|consen  374 VKVWNTQSGFCFVTFTEHTSGVTAVQFTARGN-VLLSSSLDGTVRAWDLK--RYRNFRTFTSPEPIQFSCVAVDPSGELV  450 (893)
T ss_pred             EEEEeccCceEEEEeccCCCceEEEEEEecCC-EEEEeecCCeEEeeeec--ccceeeeecCCCceeeeEEEEcCCCCEE
Confidence            878886554 3445555555667899999998 66777788999999984  3456666653333334457889999887


Q ss_pred             EEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEe--CC
Q 018474          251 IGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF--DG  328 (355)
Q Consensus       251 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~--~g  328 (355)
                      ++....                                   .-.|+..+-++|+.+..+.+++|.    ++.+...  +.
T Consensus       451 ~AG~~d-----------------------------------~F~IfvWS~qTGqllDiLsGHEgP----Vs~l~f~~~~~  491 (893)
T KOG0291|consen  451 CAGAQD-----------------------------------SFEIFVWSVQTGQLLDILSGHEGP----VSGLSFSPDGS  491 (893)
T ss_pred             Eeeccc-----------------------------------eEEEEEEEeecCeeeehhcCCCCc----ceeeEEccccC
Confidence            776541                                   135888887799999999999884    4444443  34


Q ss_pred             EEEEeecCCCeEEEeeCCCC
Q 018474          329 NLYLASLQSNFIGILPLDGP  348 (355)
Q Consensus       329 ~L~v~~~~~~~i~~~~~~~~  348 (355)
                      .|+-+++ ...|..-+.=++
T Consensus       492 ~LaS~SW-DkTVRiW~if~s  510 (893)
T KOG0291|consen  492 LLASGSW-DKTVRIWDIFSS  510 (893)
T ss_pred             eEEeccc-cceEEEEEeecc
Confidence            4444554 666666555444

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=98.40  E-value=0.00011  Score=62.82  Aligned_cols=183  Identities=14%  Similarity=0.106  Sum_probs=110.3

Q ss_pred             CCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCC-CCEEEEeCCCcEEEEc-CCC--eEE-
Q 018474           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKD-GGVILCDNEKGLLKVT-EEG--VEA-  126 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~-g~L~v~~~~~gl~~~~-~~g--~~~-  126 (355)
                      +.-.++.+..++.-+|.+++||.+..+|...-...+........+ .+.+.++ +.|++++..+.+...| .+.  .+. 
T Consensus        84 kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn-~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~l  162 (311)
T KOG0315|consen   84 KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVN-TVVLHPNQTELISGDQSGNIRVWDLGENSCTHEL  162 (311)
T ss_pred             CceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcc-eEEecCCcceEEeecCCCcEEEEEccCCcccccc
Confidence            344566777567778899999988888875533332222223445 6777754 5799998766666666 343  333 


Q ss_pred             EcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEE-Eee--cccc----ccccEEEeC
Q 018474          127 IVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT-VLH--EGFY----FANGIALSK  199 (355)
Q Consensus       127 ~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~-~~~--~~~~----~pngi~~~~  199 (355)
                      ++....++.++.+++||...++-..                 .|..|+|+.-+++.. .+.  ..+.    ..--..+||
T Consensus       163 iPe~~~~i~sl~v~~dgsml~a~nn-----------------kG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSP  225 (311)
T KOG0315|consen  163 IPEDDTSIQSLTVMPDGSMLAAANN-----------------KGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSP  225 (311)
T ss_pred             CCCCCcceeeEEEcCCCcEEEEecC-----------------CccEEEEEccCCCccccceEhhheecccceEEEEEECC
Confidence            3444488999999999987766433                 567777776444321 111  1111    122356899


Q ss_pred             CCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474          200 NEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       200 dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      |++.| .+.+....+..++.++-  -+.+...++..+--=+.+++.||.+.|....
T Consensus       226 d~k~l-at~ssdktv~iwn~~~~--~kle~~l~gh~rWvWdc~FS~dg~YlvTass  278 (311)
T KOG0315|consen  226 DVKYL-ATCSSDKTVKIWNTDDF--FKLELVLTGHQRWVWDCAFSADGEYLVTASS  278 (311)
T ss_pred             CCcEE-EeecCCceEEEEecCCc--eeeEEEeecCCceEEeeeeccCccEEEecCC
Confidence            99955 44455677888877653  1222222222222233578899988887654

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=98.39  E-value=0.00025  Score=63.15  Aligned_cols=223  Identities=18%  Similarity=0.174  Sum_probs=131.7

Q ss_pred             CCCCceEEEeeCCCeEEEEecCCEEEEEEcCCC-----e----e-EEe------eccCCCcccCeEECCCCCEEEEeCC-
Q 018474           51 VNHPEDVSVVVSKGALYTATRDGWVKYFILHNE-----T----L-VNW------KHIDSQSLLGLTTTKDGGVILCDNE-  113 (355)
Q Consensus        51 ~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g-----~----~-~~~------~~~~~~p~~gl~~d~~g~L~v~~~~-  113 (355)
                      +..|=+++..  ++.||+++... |+++....+     +    . .-|      .+..-.++ -|++ .++++|+.... 
T Consensus        48 F~r~MGl~~~--~~~l~~~t~~q-iw~f~~~~n~l~~~~~~~~~D~~yvPr~~~~TGdidiH-dia~-~~~~l~fVNT~f  122 (335)
T TIGR03032        48 FPRPMGLAVS--PQSLTLGTRYQ-LWRFANVDNLLPAGQTHPGYDRLYVPRASYVTGDIDAH-DLAL-GAGRLLFVNTLF  122 (335)
T ss_pred             cCccceeeee--CCeEEEEEcce-eEEcccccccccccccCCCCCeEEeeeeeeeccCcchh-heee-cCCcEEEEECcc
Confidence            5677888886  67899998754 788722111     1    1 111      11122467 7888 57788776654 


Q ss_pred             CcEEEEcCCC-eE-E--------EcCCc-CCcccEEEccCCcEEEEeCCCCCCCcccccccc-ccCCCCeEEEEeCCCCe
Q 018474          114 KGLLKVTEEG-VE-A--------IVPDA-SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMA-EGKPYGQLRKYDPKLKE  181 (355)
Q Consensus       114 ~gl~~~~~~g-~~-~--------~~~~~-~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~-~~~~~g~l~~~dp~~~~  181 (355)
                      .-|..+++.. +. .        ++... -+.|+++.....--|+|--+. .+.    ..-| +....|++. +|-.+++
T Consensus       123 SCLatl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~~g~p~yVTa~~~-sD~----~~gWR~~~~~gG~v-idv~s~e  196 (335)
T TIGR03032       123 SCLATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALDDGEPRYVTALSQ-SDV----ADGWREGRRDGGCV-IDIPSGE  196 (335)
T ss_pred             eeEEEECCCCccccccCCccccccCccCceeecceeeeCCeEEEEEEeec-cCC----cccccccccCCeEE-EEeCCCC
Confidence            4455665433 22 2        22222 578889886544577764221 110    1111 223344544 5655664


Q ss_pred             EEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCC-EEEEeecCC-ch
Q 018474          182 TTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGS-FWIGLIKMN-QT  259 (355)
Q Consensus       182 ~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~~~~-~~  259 (355)
                        .+.+++.+|.+-.++ ||+ ||++++..+.+.+++.+.   +..+..+ ..||+|+|+.+.  |+ ++|++.+.| +.
T Consensus       197 --vl~~GLsmPhSPRWh-dgr-LwvldsgtGev~~vD~~~---G~~e~Va-~vpG~~rGL~f~--G~llvVgmSk~R~~~  266 (335)
T TIGR03032       197 --VVASGLSMPHSPRWY-QGK-LWLLNSGRGELGYVDPQA---GKFQPVA-FLPGFTRGLAFA--GDFAFVGLSKLRESR  266 (335)
T ss_pred             --EEEcCccCCcCCcEe-CCe-EEEEECCCCEEEEEcCCC---CcEEEEE-ECCCCCccccee--CCEEEEEeccccCCC
Confidence              467899999888887 455 999999999999999742   4455444 678999999987  66 568888876 22


Q ss_pred             hhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECC
Q 018474          260 GVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDP  312 (355)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~  312 (355)
                      .+.-+   |...+.-               ...-||..+|-.+|+++..+.-.
T Consensus       267 ~f~gl---pl~~~l~---------------~~~CGv~vidl~tG~vv~~l~fe  301 (335)
T TIGR03032       267 VFGGL---PIEERLD---------------ALGCGVAVIDLNSGDVVHWLRFE  301 (335)
T ss_pred             CcCCC---chhhhhh---------------hhcccEEEEECCCCCEEEEEEeC
Confidence            21111   1111100               11247888887688877666543

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=98.38  E-value=5.2e-06  Score=76.70  Aligned_cols=202  Identities=17%  Similarity=0.192  Sum_probs=109.9

Q ss_pred             CCCCceEEEee---CCCeEEEEecC---------CEEEEEEcCCC--ee---EEe----ec--cC-CCcccCeEECCCCC
Q 018474           51 VNHPEDVSVVV---SKGALYTATRD---------GWVKYFILHNE--TL---VNW----KH--ID-SQSLLGLTTTKDGG  106 (355)
Q Consensus        51 ~~~p~~i~~d~---~~g~l~~~~~~---------g~i~~~~~~~g--~~---~~~----~~--~~-~~p~~gl~~d~~g~  106 (355)
                      -.+.-+|+++|   .++.+|+....         .+|.|+....+  ..   +.+    ..  .. .... +|+++++|.
T Consensus        48 ~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~-~l~fgpDG~  126 (331)
T PF07995_consen   48 ERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGG-GLAFGPDGK  126 (331)
T ss_dssp             TBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EE-EEEE-TTSE
T ss_pred             cCCcccceeccccCCCCEEEEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCc-cccCCCCCc
Confidence            46788999995   25889986542         36777765433  21   111    11  11 2245 799999999


Q ss_pred             EEEEeCC--------------CcEEEEcCCC-e--------------EEEcCCcCCcccEEEccC-CcEEEEeCCCCCCC
Q 018474          107 VILCDNE--------------KGLLKVTEEG-V--------------EAIVPDASFTNDVIAASD-GTLYFTVASTKYTP  156 (355)
Q Consensus       107 L~v~~~~--------------~gl~~~~~~g-~--------------~~~~~~~~~~~~l~~d~d-G~ly~~d~~~~~~~  156 (355)
                      |||+...              +.|++++++| +              +.++.....|.++++|+. |+||+++.+.... 
T Consensus       127 LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~-  205 (331)
T PF07995_consen  127 LYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGW-  205 (331)
T ss_dssp             EEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSS-
T ss_pred             EEEEeCCCCCcccccccccccceEEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCC-
Confidence            9997531              2377887554 2              223333388999999998 9999998652211 


Q ss_pred             ccccccccccCCCCeEEEE----------e--CCC-CeEEEe--eccccccccEEEeCCC------CEEEEEeCCCCeEE
Q 018474          157 TDFYKDMAEGKPYGQLRKY----------D--PKL-KETTVL--HEGFYFANGIALSKNE------DFVVVCESWKFRCR  215 (355)
Q Consensus       157 ~~~~~~~~~~~~~g~l~~~----------d--p~~-~~~~~~--~~~~~~pngi~~~~dg------~~l~v~~~~~~~i~  215 (355)
                       +....+..+...|--+++          .  +.. ......  ......|.|+.+....      ..+++++...++|+
T Consensus       206 -dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~  284 (331)
T PF07995_consen  206 -DEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIW  284 (331)
T ss_dssp             -EEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEE
T ss_pred             -cEEEEeccCCcCCCCCCcCCCCCCCCccccccCCCCcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEE
Confidence             111111111111100000          0  000 000110  1122346777777433      24889998889999


Q ss_pred             EEEeCCC-CCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474          216 RYWLKGD-RAGILDAFIENLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       216 ~~~~~~~-~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      ++.++.. .....+.+.....+.|.++.+++||.|||++..
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~  325 (331)
T PF07995_consen  285 RLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDS  325 (331)
T ss_dssp             EEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-T
T ss_pred             EEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECC
Confidence            9998632 344445555445556889999999999999864

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.37  E-value=0.00085  Score=64.46  Aligned_cols=157  Identities=13%  Similarity=0.104  Sum_probs=88.2

Q ss_pred             EEEEEcCCCeeEEeeccCCCcccCeEECCCCC-E-EEEeCC--CcEEEEc-CCC-eEEEcCCcCCcccEEEccCC-cEEE
Q 018474           75 VKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-V-ILCDNE--KGLLKVT-EEG-VEAIVPDASFTNDVIAASDG-TLYF  147 (355)
Q Consensus        75 i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L-~v~~~~--~gl~~~~-~~g-~~~~~~~~~~~~~l~~d~dG-~ly~  147 (355)
                      |+..|.+.+..+.+........ ...+.++|+ | |+....  ..|+.++ .+| .+.+...........++||| .|++
T Consensus       181 l~~~d~~g~~~~~l~~~~~~~~-~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~  259 (430)
T PRK00178        181 LQRSDYDGARAVTLLQSREPIL-SPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAF  259 (430)
T ss_pred             EEEECCCCCCceEEecCCCcee-eeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEE
Confidence            4445554333343333333334 667888886 4 333222  2488888 456 55554332334467899998 4666


Q ss_pred             EeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCC--CCeEEEEEeCCCCCc
Q 018474          148 TVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESW--KFRCRRYWLKGDRAG  225 (355)
Q Consensus       148 ~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~--~~~i~~~~~~~~~~~  225 (355)
                      +...               .....+|.+|.++++.+.+...........++|||+.++++...  ...|+++++++... 
T Consensus       260 ~~~~---------------~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~-  323 (430)
T PRK00178        260 VLSK---------------DGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA-  323 (430)
T ss_pred             EEcc---------------CCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE-
Confidence            5332               11236999999888877665433334456899999988776533  34688888754332 


Q ss_pred             ceeEecccCCCCcCceEECCCCCEEE
Q 018474          226 ILDAFIENLPGGPDNINLAPDGSFWI  251 (355)
Q Consensus       226 ~~~~~~~~~~g~p~~i~~d~~G~lwv  251 (355)
                        +.+. ..........++++|+..+
T Consensus       324 --~~lt-~~~~~~~~~~~Spdg~~i~  346 (430)
T PRK00178        324 --ERVT-FVGNYNARPRLSADGKTLV  346 (430)
T ss_pred             --EEee-cCCCCccceEECCCCCEEE
Confidence              2111 1111223346778886433

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=98.36  E-value=0.00098  Score=62.15  Aligned_cols=164  Identities=13%  Similarity=0.173  Sum_probs=93.3

Q ss_pred             eEecCCCCCCCceEEEeeCCCeEEEEecC-CEEEEEEcCCCe--------eEEeecc----------------CCCcccC
Q 018474           44 TKLGEGCVNHPEDVSVVVSKGALYTATRD-GWVKYFILHNET--------LVNWKHI----------------DSQSLLG   98 (355)
Q Consensus        44 ~~~~~~~~~~p~~i~~d~~~g~l~~~~~~-g~i~~~~~~~g~--------~~~~~~~----------------~~~p~~g   98 (355)
                      +.+..| +..|-+++..|++ .+.+.... |.+..+-. .+.        ...+...                ...+. +
T Consensus        60 ~~~a~g-Le~p~~~~~lP~G-~~~v~er~~G~l~~i~~-g~~~~~~~~~~~~~~~~~~~Gll~~al~~~fa~~~~~~~-~  135 (399)
T COG2133          60 EVVAQG-LEHPWGLARLPDG-VLLVTERPTGRLRLISD-GGSASPPVSTVPIVLLRGQGGLLDIALSPDFAQGRLVYF-G  135 (399)
T ss_pred             cccccc-ccCchhheecCCc-eEEEEccCCccEEEecC-CCcccccccccceEEeccCCCccceEecccccccceeee-E
Confidence            455666 8899999999555 56655544 65554432 111        0111111                11233 4


Q ss_pred             eEECCCCCEEEEeCCCcEEEEc-CCC----eEEE-cCCc----CCcccEEEccCCcEEEEeCCCC-----CCCccccccc
Q 018474           99 LTTTKDGGVILCDNEKGLLKVT-EEG----VEAI-VPDA----SFTNDVIAASDGTLYFTVASTK-----YTPTDFYKDM  163 (355)
Q Consensus        99 l~~d~~g~L~v~~~~~gl~~~~-~~g----~~~~-~~~~----~~~~~l~~d~dG~ly~~d~~~~-----~~~~~~~~~~  163 (355)
                      ++. ..+.+|+++. ..+.+++ .+.    .+.+ ..-+    .+-..|+++|||.||++..+..     ++.......+
T Consensus       136 ~a~-~~~~~~~~n~-~~~~~~~~g~~~l~~~~~i~~~lP~~~~H~g~~l~f~pDG~Lyvs~G~~~~~~~aq~~~~~~Gk~  213 (399)
T COG2133         136 ISE-PGGGLYVANR-VAIGRLPGGDTKLSEPKVIFRGIPKGGHHFGGRLVFGPDGKLYVTTGSNGDPALAQDNVSLAGKV  213 (399)
T ss_pred             EEe-ecCCceEEEE-EEEEEcCCCccccccccEEeecCCCCCCcCcccEEECCCCcEEEEeCCCCCcccccCccccccce
Confidence            444 3445566553 2455665 111    1222 1111    5566799999999999876520     1111111222


Q ss_pred             cccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCCCeE
Q 018474          164 AEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRC  214 (355)
Q Consensus       164 ~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i  214 (355)
                      ++.. ..++...|+.+...+.+..++.+|.|++++|....||.++-+...+
T Consensus       214 ~r~~-~a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~d~~  263 (399)
T COG2133         214 LRID-RAGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWTTEHGPDAL  263 (399)
T ss_pred             eeec-cCcccccCCCCCCcceEEeccCCccceeecCCCCcEEEEecCCCcc
Confidence            2222 3356677777777777888999999999999955699999776444

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.36  E-value=0.00035  Score=61.39  Aligned_cols=196  Identities=15%  Similarity=0.150  Sum_probs=106.6

Q ss_pred             CCcccCeEECCC-CCEEEEeCCC-cEEEEcCCC--eEEEcC-CcCCcccEEEccCCcEEEEeCCCCCCCccccccccccC
Q 018474           93 SQSLLGLTTTKD-GGVILCDNEK-GLLKVTEEG--VEAIVP-DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGK  167 (355)
Q Consensus        93 ~~p~~gl~~d~~-g~L~v~~~~~-gl~~~~~~g--~~~~~~-~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~  167 (355)
                      ..+. ||+++++ ++||...... .|+.++.+|  ++.+.- ....+.+|+...+|.+.+++..                
T Consensus        22 ~e~S-GLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er----------------   84 (248)
T PF06977_consen   22 DELS-GLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYLGNGRYVLSEER----------------   84 (248)
T ss_dssp             S-EE-EEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE-STTEEEEEETT----------------
T ss_pred             CCcc-ccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEECCCEEEEEEcC----------------
Confidence            3477 9999976 6688877654 488888777  555433 2367888999888888887644                


Q ss_pred             CCCeEEEEeC--CCCeE-----EEeecc-----ccccccEEEeCCCCEEEEEeCC-CCeEEEEEe--CCCCCccee--Ee
Q 018474          168 PYGQLRKYDP--KLKET-----TVLHEG-----FYFANGIALSKNEDFVVVCESW-KFRCRRYWL--KGDRAGILD--AF  230 (355)
Q Consensus       168 ~~g~l~~~dp--~~~~~-----~~~~~~-----~~~pngi~~~~dg~~l~v~~~~-~~~i~~~~~--~~~~~~~~~--~~  230 (355)
                       .+.++.++.  .+...     +.+.-+     -..-.|+|+++.++.+|++... ..+|+.++.  .+.......  .+
T Consensus        85 -~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~  163 (248)
T PF06977_consen   85 -DQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDL  163 (248)
T ss_dssp             -TTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHH
T ss_pred             -CCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccc
Confidence             334544432  33222     111111     1224699999998877777543 335655553  111110000  00


Q ss_pred             c-c-cCCCCcCceEECCC-CCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEE
Q 018474          231 I-E-NLPGGPDNINLAPD-GSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIR  307 (355)
Q Consensus       231 ~-~-~~~g~p~~i~~d~~-G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~  307 (355)
                      . . ..-.-+.++.+|+. |++||=+...                                    ..++++|. +|+...
T Consensus       164 ~~~~~~~~d~S~l~~~p~t~~lliLS~es------------------------------------~~l~~~d~-~G~~~~  206 (248)
T PF06977_consen  164 DDDKLFVRDLSGLSYDPRTGHLLILSDES------------------------------------RLLLELDR-QGRVVS  206 (248)
T ss_dssp             H-HT--SS---EEEEETTTTEEEEEETTT------------------------------------TEEEEE-T-T--EEE
T ss_pred             ccccceeccccceEEcCCCCeEEEEECCC------------------------------------CeEEEECC-CCCEEE
Confidence            0 0 01123677887765 6788876542                                    37999999 999888


Q ss_pred             EEECCCC-----CcccceeEEEEeC-CEEEEeecCCCeEEEee
Q 018474          308 DFNDPDA-----TYISFVTSAAEFD-GNLYLASLQSNFIGILP  344 (355)
Q Consensus       308 ~~~~~~g-----~~~~~~~~~~~~~-g~L~v~~~~~~~i~~~~  344 (355)
                      .+.-..|     ..+...-+++.++ |+|||.+= .|..++|+
T Consensus       207 ~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsE-pNlfy~f~  248 (248)
T PF06977_consen  207 SLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSE-PNLFYRFE  248 (248)
T ss_dssp             EEE-STTGGG-SS---SEEEEEE-TT--EEEEET-TTEEEEEE
T ss_pred             EEEeCCcccCcccccCCccEEEECCCCCEEEEcC-CceEEEeC
Confidence            8876554     2245677788764 99999984 88888874

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.35  E-value=0.00032  Score=66.11  Aligned_cols=128  Identities=9%  Similarity=0.028  Sum_probs=73.7

Q ss_pred             CCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCC-CcceeEecccCCCCcCceEECC
Q 018474          167 KPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDR-AGILDAFIENLPGGPDNINLAP  245 (355)
Q Consensus       167 ~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~g~p~~i~~d~  245 (355)
                      ...+.++.+|+++++...... .......++  ++..+|+.. ..+.|++++.+..+ ..+.+.+.   ........+ .
T Consensus       248 ~~~g~l~a~d~~tG~~~W~~~-~~~~~~p~~--~~~~vyv~~-~~G~l~~~d~~tG~~~W~~~~~~---~~~~ssp~i-~  319 (377)
T TIGR03300       248 SYQGRVAALDLRSGRVLWKRD-ASSYQGPAV--DDNRLYVTD-ADGVVVALDRRSGSELWKNDELK---YRQLTAPAV-V  319 (377)
T ss_pred             EcCCEEEEEECCCCcEEEeec-cCCccCceE--eCCEEEEEC-CCCeEEEEECCCCcEEEcccccc---CCccccCEE-E
Confidence            345789999998887654332 212222233  445688875 46789999985432 11111110   001111223 2


Q ss_pred             CCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEE
Q 018474          246 DGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAE  325 (355)
Q Consensus       246 ~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~  325 (355)
                      ++++++++..                                     +.++.+|+++|+.+..+....+.   ..+.-+.
T Consensus       320 g~~l~~~~~~-------------------------------------G~l~~~d~~tG~~~~~~~~~~~~---~~~sp~~  359 (377)
T TIGR03300       320 GGYLVVGDFE-------------------------------------GYLHWLSREDGSFVARLKTDGSG---IASPPVV  359 (377)
T ss_pred             CCEEEEEeCC-------------------------------------CEEEEEECCCCCEEEEEEcCCCc---cccCCEE
Confidence            4678887654                                     46889998789988888654432   2223345


Q ss_pred             eCCEEEEeecCCCeEEEe
Q 018474          326 FDGNLYLASLQSNFIGIL  343 (355)
Q Consensus       326 ~~g~L~v~~~~~~~i~~~  343 (355)
                      .+++||+++. .+.|..+
T Consensus       360 ~~~~l~v~~~-dG~l~~~  376 (377)
T TIGR03300       360 VGDGLLVQTR-DGDLYAF  376 (377)
T ss_pred             ECCEEEEEeC-CceEEEe
Confidence            5688999987 5555544

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=98.34  E-value=0.0014  Score=56.99  Aligned_cols=224  Identities=19%  Similarity=0.226  Sum_probs=142.8

Q ss_pred             CCeEEEEecCCEEEEEEcCC-----CeeEEeecc-CCCcccCeEECCCCCEEEEeCCCcEEEEc--CCC--eEEEcCCcC
Q 018474           63 KGALYTATRDGWVKYFILHN-----ETLVNWKHI-DSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG--VEAIVPDAS  132 (355)
Q Consensus        63 ~g~l~~~~~~g~i~~~~~~~-----g~~~~~~~~-~~~p~~gl~~d~~g~L~v~~~~~gl~~~~--~~g--~~~~~~~~~  132 (355)
                      -+.++.++.|..+..++...     |...+-.+. ...+. .++..++|+..+.-..++..++-  .+|  .+++.....
T Consensus        28 ~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~-dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~  106 (315)
T KOG0279|consen   28 SDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVS-DVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTK  106 (315)
T ss_pred             CceEEEcccceEEEEEEeccCccccCceeeeeeccceEec-ceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCC
Confidence            34556667788787776532     222221121 23456 78888999988877667766664  355  455655557


Q ss_pred             CcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecc--ccccccEEEeCCC-CEEEEEeC
Q 018474          133 FTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG--FYFANGIALSKNE-DFVVVCES  209 (355)
Q Consensus       133 ~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~--~~~pngi~~~~dg-~~l~v~~~  209 (355)
                      .+-++++++|.+-.++.+.                 ...+..||..++....+..+  -..-+.++|+|.. +..++...
T Consensus       107 dVlsva~s~dn~qivSGSr-----------------DkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s  169 (315)
T KOG0279|consen  107 DVLSVAFSTDNRQIVSGSR-----------------DKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSAS  169 (315)
T ss_pred             ceEEEEecCCCceeecCCC-----------------cceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEcc
Confidence            7888999999876676544                 33566666655544333333  2335678899986 44555555


Q ss_pred             CCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCC
Q 018474          210 WKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGS  289 (355)
Q Consensus       210 ~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (355)
                      ..+.|..+++++-+.  ...+. +..++-+-+.+++||.+-.+...                                  
T Consensus       170 ~DktvKvWnl~~~~l--~~~~~-gh~~~v~t~~vSpDGslcasGgk----------------------------------  212 (315)
T KOG0279|consen  170 WDKTVKVWNLRNCQL--RTTFI-GHSGYVNTVTVSPDGSLCASGGK----------------------------------  212 (315)
T ss_pred             CCceEEEEccCCcch--hhccc-cccccEEEEEECCCCCEEecCCC----------------------------------
Confidence            566777777765332  22333 34455666889999988776433                                  


Q ss_pred             CCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeCCEEEEeecCCCeEEEeeCCCC
Q 018474          290 DAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLDGP  348 (355)
Q Consensus       290 ~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~~~  348 (355)
                        .+.+...|-.+++.++.+.-     +..+.++++..++.|+.-.-...|...++.+.
T Consensus       213 --dg~~~LwdL~~~k~lysl~a-----~~~v~sl~fspnrywL~~at~~sIkIwdl~~~  264 (315)
T KOG0279|consen  213 --DGEAMLWDLNEGKNLYSLEA-----FDIVNSLCFSPNRYWLCAATATSIKIWDLESK  264 (315)
T ss_pred             --CceEEEEEccCCceeEeccC-----CCeEeeEEecCCceeEeeccCCceEEEeccch
Confidence              13455555546676665533     34678899999999999888888988887654

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.33  E-value=0.00028  Score=65.18  Aligned_cols=108  Identities=17%  Similarity=0.112  Sum_probs=74.8

Q ss_pred             CCEEEEeCC-----CcEEEEcC-CC--eEEEcCCcCCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEE
Q 018474          105 GGVILCDNE-----KGLLKVTE-EG--VEAIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKY  175 (355)
Q Consensus       105 g~L~v~~~~-----~gl~~~~~-~g--~~~~~~~~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~  175 (355)
                      .++||.+..     +.++.+|. ++  +..+... ..|+++ +++|| .+|++.+...        .+.-+.....|-.|
T Consensus        13 ~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G-~~P~~~-~spDg~~lyva~~~~~--------R~~~G~~~d~V~v~   82 (352)
T TIGR02658        13 RRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGG-FLPNPV-VASDGSFFAHASTVYS--------RIARGKRTDYVEVI   82 (352)
T ss_pred             CEEEEECCcccccCceEEEEECCCCEEEEEEEcc-CCCcee-ECCCCCEEEEEecccc--------ccccCCCCCEEEEE
Confidence            457777654     45778873 44  4444433 578886 99998 7999976311        11223446689999


Q ss_pred             eCCCCeEEEeec--------cccccccEEEeCCCCEEEEEeCC-CCeEEEEEeCCC
Q 018474          176 DPKLKETTVLHE--------GFYFANGIALSKNEDFVVVCESW-KFRCRRYWLKGD  222 (355)
Q Consensus       176 dp~~~~~~~~~~--------~~~~pngi~~~~dg~~l~v~~~~-~~~i~~~~~~~~  222 (355)
                      |+++.+...-..        ....|+.+++++||+++|+++.. .+.|.++|+...
T Consensus        83 D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~  138 (352)
T TIGR02658        83 DPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGK  138 (352)
T ss_pred             ECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCC
Confidence            998887653222        13456799999999999999866 889999998643

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=98.29  E-value=0.00041  Score=61.10  Aligned_cols=157  Identities=11%  Similarity=0.068  Sum_probs=106.3

Q ss_pred             eEecCCCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCC-cEEEEc-C
Q 018474           44 TKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEK-GLLKVT-E  121 (355)
Q Consensus        44 ~~~~~~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~-gl~~~~-~  121 (355)
                      -++..|.-..-.+|...|.++.+..++.|+.|+.+|.+..+-+.+....++|  ..++|++|-++++..+. .|-.|| +
T Consensus        93 lRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~~~~~IkLyD~R  170 (311)
T KOG1446|consen   93 LRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALANGSELIKLYDLR  170 (311)
T ss_pred             EEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEecCCCeEEEEEec
Confidence            3566677777889999977777777778999999998766555555555556  58999999988876654 455555 2


Q ss_pred             ---CC-eEEEcCC---cCCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEe----eccc
Q 018474          122 ---EG-VEAIVPD---ASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL----HEGF  189 (355)
Q Consensus       122 ---~g-~~~~~~~---~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~----~~~~  189 (355)
                         .| .+.+...   ....++|-+++||. |.+++..                  +.++.+|.=+|.+..-    ....
T Consensus       171 s~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~------------------s~~~~lDAf~G~~~~tfs~~~~~~  232 (311)
T KOG1446|consen  171 SFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNA------------------SFIYLLDAFDGTVKSTFSGYPNAG  232 (311)
T ss_pred             ccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCC------------------CcEEEEEccCCcEeeeEeeccCCC
Confidence               34 5554433   26788899999995 5565433                  3455556545543221    2223


Q ss_pred             cccccEEEeCCCCEEEEEeCCCCeEEEEEeCC
Q 018474          190 YFANGIALSKNEDFVVVCESWKFRCRRYWLKG  221 (355)
Q Consensus       190 ~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~  221 (355)
                      ..|-..+++||+++++.+ ...++|..|+++.
T Consensus       233 ~~~~~a~ftPds~Fvl~g-s~dg~i~vw~~~t  263 (311)
T KOG1446|consen  233 NLPLSATFTPDSKFVLSG-SDDGTIHVWNLET  263 (311)
T ss_pred             CcceeEEECCCCcEEEEe-cCCCcEEEEEcCC
Confidence            345577899999966554 5678999999854

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.29  E-value=0.00086  Score=64.90  Aligned_cols=183  Identities=17%  Similarity=0.266  Sum_probs=111.8

Q ss_pred             CceEEEeeCCCeEEEEecCCEEEEEEcCCCe--eEEeec-cCCCcccCeEECCCCCEEEEeCCCcEEEE-c-C-CC--eE
Q 018474           54 PEDVSVVVSKGALYTATRDGWVKYFILHNET--LVNWKH-IDSQSLLGLTTTKDGGVILCDNEKGLLKV-T-E-EG--VE  125 (355)
Q Consensus        54 p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~--~~~~~~-~~~~p~~gl~~d~~g~L~v~~~~~gl~~~-~-~-~g--~~  125 (355)
                      -.++.+.+++..+..++.++.+..++..+++  ...-.. ....+. .+++.++|+..++...+..+++ + + .+  ++
T Consensus       162 v~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~-~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~  240 (456)
T KOG0266|consen  162 VTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVS-DVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLK  240 (456)
T ss_pred             eEEEEEcCCCCeEEEccCCCcEEEeecccccchhhcccccccccee-eeEECCCCcEEEEecCCceEEEeeccCCCeEEE
Confidence            3345556556655556667766666663443  111111 112366 8899999987776666555544 3 3 34  66


Q ss_pred             EEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecc-ccccccEEEeCCCCEE
Q 018474          126 AIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG-FYFANGIALSKNEDFV  204 (355)
Q Consensus       126 ~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~-~~~pngi~~~~dg~~l  204 (355)
                      ++......++++++.++|++.++.+.                 .+.+..||.++++....... -..-.++++++|++.+
T Consensus       241 ~l~gH~~~v~~~~f~p~g~~i~Sgs~-----------------D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l  303 (456)
T KOG0266|consen  241 TLKGHSTYVTSVAFSPDGNLLVSGSD-----------------DGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLL  303 (456)
T ss_pred             EecCCCCceEEEEecCCCCEEEEecC-----------------CCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEE
Confidence            66666688999999999988887554                 56788889887765444333 3345788999999965


Q ss_pred             EEEeCCCCeEEEEEeCCCCCcceeEeccc-CCCCcCceEECCCCCEEEEeec
Q 018474          205 VVCESWKFRCRRYWLKGDRAGILDAFIEN-LPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       205 ~v~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      +.+ +.++.|..||+.+....-.+.+... .+..-..+.++++|.+.+....
T Consensus       304 ~s~-s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~  354 (456)
T KOG0266|consen  304 VSA-SYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL  354 (456)
T ss_pred             EEc-CCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC
Confidence            555 6678888899865431101122211 1111245678888975554433

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.29  E-value=0.0014  Score=62.54  Aligned_cols=161  Identities=12%  Similarity=0.053  Sum_probs=92.0

Q ss_pred             EEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCC---CcEEEEc-CCC-eEEEcCCcCCcccEEEccCC-cEE
Q 018474           74 WVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNE---KGLLKVT-EEG-VEAIVPDASFTNDVIAASDG-TLY  146 (355)
Q Consensus        74 ~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~---~gl~~~~-~~g-~~~~~~~~~~~~~l~~d~dG-~ly  146 (355)
                      .|+..|...+..+.+........ ..++.++|+ |+++...   ..++.++ .+| .+.+.........+.+++|| .|+
T Consensus       171 ~l~~~d~~g~~~~~l~~~~~~~~-~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~  249 (417)
T TIGR02800       171 ELQVADYDGANPQTITRSREPIL-SPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLA  249 (417)
T ss_pred             eEEEEcCCCCCCEEeecCCCcee-cccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEE
Confidence            57777764444444443333344 667788887 4444332   2477777 456 55444322345567899998 477


Q ss_pred             EEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCC--CCeEEEEEeCCCCC
Q 018474          147 FTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESW--KFRCRRYWLKGDRA  224 (355)
Q Consensus       147 ~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~--~~~i~~~~~~~~~~  224 (355)
                      ++...               .....+|.+|..+++.+.+..........++++||+.++++...  ...|+.+++++...
T Consensus       250 ~~~~~---------------~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~  314 (417)
T TIGR02800       250 VSLSK---------------DGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV  314 (417)
T ss_pred             EEECC---------------CCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence            66432               11236899998888766554332223356889999988766532  23688888764322


Q ss_pred             cceeEecccCCCCcCceEECCCCCEEEEee
Q 018474          225 GILDAFIENLPGGPDNINLAPDGSFWIGLI  254 (355)
Q Consensus       225 ~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~  254 (355)
                         +.+. ..........++++|++.+.+.
T Consensus       315 ---~~l~-~~~~~~~~~~~spdg~~i~~~~  340 (417)
T TIGR02800       315 ---RRLT-FRGGYNASPSWSPDGDLIAFVH  340 (417)
T ss_pred             ---EEee-cCCCCccCeEECCCCCEEEEEE
Confidence               2221 1112234567788887554443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.29  E-value=0.0013  Score=62.82  Aligned_cols=156  Identities=13%  Similarity=0.024  Sum_probs=89.9

Q ss_pred             EEEEEEcCCCe-eEEeeccCCCcccCeEECCCCC--EEEEeCC---CcEEEEcC-CC-eEEEcCCcCCcccEEEccCC-c
Q 018474           74 WVKYFILHNET-LVNWKHIDSQSLLGLTTTKDGG--VILCDNE---KGLLKVTE-EG-VEAIVPDASFTNDVIAASDG-T  144 (355)
Q Consensus        74 ~i~~~~~~~g~-~~~~~~~~~~p~~gl~~d~~g~--L~v~~~~---~gl~~~~~-~g-~~~~~~~~~~~~~l~~d~dG-~  144 (355)
                      +|+..|. +|. .+.+... +... .-.+.++|+  +|+....   ..|+.++. +| .+.+...........++||| .
T Consensus       170 ~l~~~d~-dg~~~~~~~~~-~~~~-~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~  246 (419)
T PRK04043        170 NIVLADY-TLTYQKVIVKG-GLNI-FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSK  246 (419)
T ss_pred             eEEEECC-CCCceeEEccC-CCeE-eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCE
Confidence            5566565 333 3333332 3223 556778885  5655443   24888884 66 66665432223345688999 5


Q ss_pred             EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCC--CCeEEEEEeCCC
Q 018474          145 LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESW--KFRCRRYWLKGD  222 (355)
Q Consensus       145 ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~--~~~i~~~~~~~~  222 (355)
                      |.++...               .....+|.+|.++++.+.+......-..-.++|||+.++++...  ...|+++++++.
T Consensus       247 la~~~~~---------------~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g  311 (419)
T PRK04043        247 LLLTMAP---------------KGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSG  311 (419)
T ss_pred             EEEEEcc---------------CCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence            7666432               11357999998888877664432222234799999988887643  236888888654


Q ss_pred             CCcceeEecccCCCCcCceEECCCCCEEEEe
Q 018474          223 RAGILDAFIENLPGGPDNINLAPDGSFWIGL  253 (355)
Q Consensus       223 ~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~  253 (355)
                      ..   +.+...  +. .+...+++|+..+-.
T Consensus       312 ~~---~rlt~~--g~-~~~~~SPDG~~Ia~~  336 (419)
T PRK04043        312 SV---EQVVFH--GK-NNSSVSTYKNYIVYS  336 (419)
T ss_pred             Ce---EeCccC--CC-cCceECCCCCEEEEE
Confidence            32   112111  11 234678888754444

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.26  E-value=0.00087  Score=58.55  Aligned_cols=210  Identities=16%  Similarity=0.128  Sum_probs=116.0

Q ss_pred             CCEEEEEEcCCCeeEEeeccC---CCcccCeEECCCCCEEEEeCCCcEEEEcC-CC-eE-EEcCCcCCcccEEEccCCcE
Q 018474           72 DGWVKYFILHNETLVNWKHID---SQSLLGLTTTKDGGVILCDNEKGLLKVTE-EG-VE-AIVPDASFTNDVIAASDGTL  145 (355)
Q Consensus        72 ~g~i~~~~~~~g~~~~~~~~~---~~p~~gl~~d~~g~L~v~~~~~gl~~~~~-~g-~~-~~~~~~~~~~~l~~d~dG~l  145 (355)
                      +|.|..+|+.+|+..--....   ..+. ......++++|+++..+.|+.++. +| .. ..... ..+.......++.+
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~-~~~~~~~~~~~~~v   79 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPV-ATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLP-GPISGAPVVDGGRV   79 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEE-ETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECS-SCGGSGEEEETTEE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCcc-ceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecc-ccccceeeeccccc
Confidence            567888888788643211111   1111 124445889999987788999994 88 32 22211 11111123456778


Q ss_pred             EEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee-ccc----cccccEEEeCCCCEEEEEeCCCCeEEEEEeC
Q 018474          146 YFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGF----YFANGIALSKNEDFVVVCESWKFRCRRYWLK  220 (355)
Q Consensus       146 y~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~-~~~----~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~  220 (355)
                      |+...                  .+.++.+|..+|+..... ...    ..-.......+++.+|+... .+.|+.++++
T Consensus        80 ~v~~~------------------~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~l~~~d~~  140 (238)
T PF13360_consen   80 YVGTS------------------DGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS-SGKLVALDPK  140 (238)
T ss_dssp             EEEET------------------TSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET-CSEEEEEETT
T ss_pred             ccccc------------------eeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec-cCcEEEEecC
Confidence            88753                  347999998888765542 111    11112233334666777764 6789999975


Q ss_pred             CCCC-cceeEecccCCC-C--------cCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCC
Q 018474          221 GDRA-GILDAFIENLPG-G--------PDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSD  290 (355)
Q Consensus       221 ~~~~-~~~~~~~~~~~g-~--------p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (355)
                      ..+. .+.+ . ...++ .        .....++ +|.++++...                                   
T Consensus       141 tG~~~w~~~-~-~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~-----------------------------------  182 (238)
T PF13360_consen  141 TGKLLWKYP-V-GEPRGSSPISSFSDINGSPVIS-DGRVYVSSGD-----------------------------------  182 (238)
T ss_dssp             TTEEEEEEE-S-STT-SS--EEEETTEEEEEECC-TTEEEEECCT-----------------------------------
T ss_pred             CCcEEEEee-c-CCCCCCcceeeecccccceEEE-CCEEEEEcCC-----------------------------------
Confidence            4322 1111 1 11010 0        0112233 4578887755                                   


Q ss_pred             CceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeCCEEEEeecCCCeEEEeeCCCC
Q 018474          291 AGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLDGP  348 (355)
Q Consensus       291 ~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~~~  348 (355)
                        +.++.+|.++|+..  +..+.+.   ........++.||+++ ..+.|..+++.+-
T Consensus       183 --g~~~~~d~~tg~~~--w~~~~~~---~~~~~~~~~~~l~~~~-~~~~l~~~d~~tG  232 (238)
T PF13360_consen  183 --GRVVAVDLATGEKL--WSKPISG---IYSLPSVDGGTLYVTS-SDGRLYALDLKTG  232 (238)
T ss_dssp             --SSEEEEETTTTEEE--EEECSS----ECECEECCCTEEEEEE-TTTEEEEEETTTT
T ss_pred             --CeEEEEECCCCCEE--EEecCCC---ccCCceeeCCEEEEEe-CCCEEEEEECCCC
Confidence              22677787677744  3332211   1222456779999999 7899999988763

...

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.18  E-value=0.0022  Score=56.02  Aligned_cols=168  Identities=15%  Similarity=0.131  Sum_probs=93.9

Q ss_pred             EEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEc-CCC-eEEE--cCC--c
Q 018474           58 SVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT-EEG-VEAI--VPD--A  131 (355)
Q Consensus        58 ~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~-~~g-~~~~--~~~--~  131 (355)
                      ... .++.+|+++.++.|+.+|..+|+..--........ ....-.++.+|++...+.++.++ ++| +..-  ...  .
T Consensus        32 ~~~-~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~-~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~  109 (238)
T PF13360_consen   32 AVP-DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPIS-GAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPP  109 (238)
T ss_dssp             EEE-ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGG-SGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCT
T ss_pred             EEE-eCCEEEEEcCCCEEEEEECCCCCEEEEeecccccc-ceeeecccccccccceeeeEecccCCcceeeeeccccccc
Confidence            443 58899999999999999998997543222223333 33233578899998666799999 688 3221  111  1


Q ss_pred             ---CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccc------------cEE
Q 018474          132 ---SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFAN------------GIA  196 (355)
Q Consensus       132 ---~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pn------------gi~  196 (355)
                         .......++ ++.+|++..                  .+.++.+|+++|+....... ..+.            +-.
T Consensus       110 ~~~~~~~~~~~~-~~~~~~~~~------------------~g~l~~~d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~~~~  169 (238)
T PF13360_consen  110 AGVRSSSSPAVD-GDRLYVGTS------------------SGKLVALDPKTGKLLWKYPV-GEPRGSSPISSFSDINGSP  169 (238)
T ss_dssp             CSTB--SEEEEE-TTEEEEEET------------------CSEEEEEETTTTEEEEEEES-STT-SS--EEEETTEEEEE
T ss_pred             cccccccCceEe-cCEEEEEec------------------cCcEEEEecCCCcEEEEeec-CCCCCCcceeeecccccce
Confidence               112223333 446777643                  45799999999987543322 2211            222


Q ss_pred             EeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEee
Q 018474          197 LSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLI  254 (355)
Q Consensus       197 ~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~  254 (355)
                      +..++ .+|++.. .+++..++.+..+.. .+.   . ...+.......++.+|+++.
T Consensus       170 ~~~~~-~v~~~~~-~g~~~~~d~~tg~~~-w~~---~-~~~~~~~~~~~~~~l~~~~~  220 (238)
T PF13360_consen  170 VISDG-RVYVSSG-DGRVVAVDLATGEKL-WSK---P-ISGIYSLPSVDGGTLYVTSS  220 (238)
T ss_dssp             ECCTT-EEEEECC-TSSEEEEETTTTEEE-EEE---C-SS-ECECEECCCTEEEEEET
T ss_pred             EEECC-EEEEEcC-CCeEEEEECCCCCEE-EEe---c-CCCccCCceeeCCEEEEEeC
Confidence            32344 6888764 344666676543211 111   1 11123323345567888873

...

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=98.14  E-value=0.00078  Score=59.09  Aligned_cols=146  Identities=20%  Similarity=0.210  Sum_probs=92.5

Q ss_pred             CCCCceEEEeeCCCeEEEEec-CCEEEEEEcCCCee-EEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEcCCC---eE
Q 018474           51 VNHPEDVSVVVSKGALYTATR-DGWVKYFILHNETL-VNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEEG---VE  125 (355)
Q Consensus        51 ~~~p~~i~~d~~~g~l~~~~~-~g~i~~~~~~~g~~-~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~~g---~~  125 (355)
                      -.-.|+|+..  ++.+|.-+- ++..+.+|+++-+. ..+. -.+... ||+.| ..+||+++....|+.+|+..   .+
T Consensus        89 ~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~~~~~-y~~EGW-GLt~d-g~~Li~SDGS~~L~~~dP~~f~~~~  163 (264)
T PF05096_consen   89 RYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKIGTFP-YPGEGW-GLTSD-GKRLIMSDGSSRLYFLDPETFKEVR  163 (264)
T ss_dssp             T--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEEEEE--SSS---EEEEC-SSCEEEE-SSSEEEEE-TTT-SEEE
T ss_pred             cccceeEEEE--CCEEEEEEecCCeEEEEccccceEEEEEe-cCCcce-EEEcC-CCEEEEECCccceEEECCcccceEE
Confidence            4567888887  667887664 78889999976543 3332 235677 89977 45899999888899999632   22


Q ss_pred             EEc---CC--cCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeec--c----------
Q 018474          126 AIV---PD--ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE--G----------  188 (355)
Q Consensus       126 ~~~---~~--~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~--~----------  188 (355)
                      .+.   ..  ....|.|-.- +|.||.....                 +..|.++||++|++....+  +          
T Consensus       164 ~i~V~~~g~pv~~LNELE~i-~G~IyANVW~-----------------td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~  225 (264)
T PF05096_consen  164 TIQVTDNGRPVSNLNELEYI-NGKIYANVWQ-----------------TDRIVRIDPETGKVVGWIDLSGLRPEVGRDKS  225 (264)
T ss_dssp             EEE-EETTEE---EEEEEEE-TTEEEEEETT-----------------SSEEEEEETTT-BEEEEEE-HHHHHHHTSTTS
T ss_pred             EEEEEECCEECCCcEeEEEE-cCEEEEEeCC-----------------CCeEEEEeCCCCeEEEEEEhhHhhhccccccc
Confidence            221   11  2677887654 7889876543                 4589999999999876531  1          


Q ss_pred             ----ccccccEEEeCCCCEEEEEeCCCCeEEEEEe
Q 018474          189 ----FYFANGIALSKNEDFVVVCESWKFRCRRYWL  219 (355)
Q Consensus       189 ----~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~  219 (355)
                          ...-||||.+++.+.+|++.-.=..++++.+
T Consensus       226 ~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~l  260 (264)
T PF05096_consen  226 RQPDDDVLNGIAYDPETDRLFVTGKLWPKLYEVKL  260 (264)
T ss_dssp             T--TTS-EEEEEEETTTTEEEEEETT-SEEEEEEE
T ss_pred             ccccCCeeEeEeEeCCCCEEEEEeCCCCceEEEEE
Confidence                1246999999999999998643334554443

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.12  E-value=0.0027  Score=56.03  Aligned_cols=186  Identities=11%  Similarity=0.097  Sum_probs=103.9

Q ss_pred             CCCCceEEEeeCCCeEEEEec-CCEEEEEEcCCCeeEEeecc--CCCcccCeEECCCCCEEEEeCC-CcEE--EEcCCC-
Q 018474           51 VNHPEDVSVVVSKGALYTATR-DGWVKYFILHNETLVNWKHI--DSQSLLGLTTTKDGGVILCDNE-KGLL--KVTEEG-  123 (355)
Q Consensus        51 ~~~p~~i~~d~~~g~l~~~~~-~g~i~~~~~~~g~~~~~~~~--~~~p~~gl~~d~~g~L~v~~~~-~gl~--~~~~~g-  123 (355)
                      -..-.+++++|+.+.||..+. .-.|..++. +|++....+.  -..|. +|..-.+|..-+++-. +.++  .+++++ 
T Consensus        85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~-~GdlirtiPL~g~~DpE-~Ieyig~n~fvi~dER~~~l~~~~vd~~t~  162 (316)
T COG3204          85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTK-EGDLIRTIPLTGFSDPE-TIEYIGGNQFVIVDERDRALYLFTVDADTT  162 (316)
T ss_pred             cccccceeeCCCcceEEEecCCCceEEEEec-CCceEEEecccccCChh-HeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence            344788999988899997654 456777776 6665443322  23466 7766544444444422 2333  444433 


Q ss_pred             eEEEcC-C---------cCCcccEEEccC-CcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeec-----
Q 018474          124 VEAIVP-D---------ASFTNDVIAASD-GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE-----  187 (355)
Q Consensus       124 ~~~~~~-~---------~~~~~~l~~d~d-G~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~-----  187 (355)
                      +..... .         -..-.+++.|+. +++||+-...                --++|.++...........     
T Consensus       163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~----------------P~~I~~~~~~~~~l~~~~~~~~~~  226 (316)
T COG3204         163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERN----------------PIGIFEVTQSPSSLSVHASLDPTA  226 (316)
T ss_pred             EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccC----------------CcEEEEEecCCcccccccccCccc
Confidence            221111 1         145567999985 4899975431                1145555432211111110     


Q ss_pred             --c--ccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCC------CcCceEECCCCCEEEEeec
Q 018474          188 --G--FYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPG------GPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       188 --~--~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g------~p~~i~~d~~G~lwv~~~~  255 (355)
                        +  +.--.|+.+++..++|+|-..-...|..++.+|.-.+... +..+..|      .+.|++.|++|+|||....
T Consensus       227 ~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~ls-L~~g~~gL~~dipqaEGiamDd~g~lYIvSEP  303 (316)
T COG3204         227 DRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLS-LTKGNHGLSSDIPQAEGIAMDDDGNLYIVSEP  303 (316)
T ss_pred             ccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEE-eccCCCCCcccCCCcceeEECCCCCEEEEecC
Confidence              0  1112466777766667776666677888887765322221 1111111      3678999999999999865

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=98.06  E-value=0.0014  Score=57.61  Aligned_cols=157  Identities=18%  Similarity=0.146  Sum_probs=103.9

Q ss_pred             CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEe--eccccccccEEEeCCCCEEEEEeC
Q 018474          132 SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL--HEGFYFANGIALSKNEDFVVVCES  209 (355)
Q Consensus       132 ~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~--~~~~~~pngi~~~~dg~~l~v~~~  209 (355)
                      .|..++.+..+|.||-++...               ....+.++|++++++...  .+.-.+..|+++..|  .+|.-..
T Consensus        45 aFTQGL~~~~~g~LyESTG~y---------------G~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d--~l~qLTW  107 (264)
T PF05096_consen   45 AFTQGLEFLDDGTLYESTGLY---------------GQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD--KLYQLTW  107 (264)
T ss_dssp             -EEEEEEEEETTEEEEEECST---------------TEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT--EEEEEES
T ss_pred             ccCccEEecCCCEEEEeCCCC---------------CcEEEEEEECCCCcEEEEEECCccccceeEEEECC--EEEEEEe
Confidence            788899998899999987651               123688999999986533  344567899999865  5888888


Q ss_pred             CCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCC
Q 018474          210 WKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGS  289 (355)
Q Consensus       210 ~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (355)
                      ..+..++|+.+.  ......+  ..++-.=|++.|. ..+|+++..                                  
T Consensus       108 k~~~~f~yd~~t--l~~~~~~--~y~~EGWGLt~dg-~~Li~SDGS----------------------------------  148 (264)
T PF05096_consen  108 KEGTGFVYDPNT--LKKIGTF--PYPGEGWGLTSDG-KRLIMSDGS----------------------------------  148 (264)
T ss_dssp             SSSEEEEEETTT--TEEEEEE--E-SSS--EEEECS-SCEEEE-SS----------------------------------
T ss_pred             cCCeEEEEcccc--ceEEEEE--ecCCcceEEEcCC-CEEEEECCc----------------------------------
Confidence            888899999753  2223333  2233345688664 479998865                                  


Q ss_pred             CCceEEEEEeCCCCeEEEEEECC-CCCcccceeEEEEeCCEEEEeecCCCeEEEeeCCC
Q 018474          290 DAGARVVKVDGNDGKIIRDFNDP-DATYISFVTSAAEFDGNLYLASLQSNFIGILPLDG  347 (355)
Q Consensus       290 ~~~~~v~~~~~~~g~~~~~~~~~-~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~~  347 (355)
                         ..+..+||++-+....+... +|........+--.+|.||.--+..+.|.+++..+
T Consensus       149 ---~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp~t  204 (264)
T PF05096_consen  149 ---SRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDPET  204 (264)
T ss_dssp             ---SEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEEEEEETTT
T ss_pred             ---cceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCC
Confidence               36888999666666666553 34444445555556899999999999999998765

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=98.05  E-value=0.0028  Score=58.74  Aligned_cols=182  Identities=13%  Similarity=0.114  Sum_probs=104.7

Q ss_pred             CCCceEEEeeCCCeEEEEecCCEEEE--EEcCCCeeEEeeccCCC-cccCeEECCCCC--EEEEeCCCcEEEEc-CCC-e
Q 018474           52 NHPEDVSVVVSKGALYTATRDGWVKY--FILHNETLVNWKHIDSQ-SLLGLTTTKDGG--VILCDNEKGLLKVT-EEG-V  124 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~~g~i~~--~~~~~g~~~~~~~~~~~-p~~gl~~d~~g~--L~v~~~~~gl~~~~-~~g-~  124 (355)
                      .+-.++.++|.--.|.++..+|.+..  +|.+.....+-...... +. ...+.++|.  ++.+....=+|.+| .++ +
T Consensus       214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~-~a~f~p~G~~~i~~s~rrky~ysyDle~ak~  292 (514)
T KOG2055|consen  214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQ-KAEFAPNGHSVIFTSGRRKYLYSYDLETAKV  292 (514)
T ss_pred             CCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccc-eeeecCCCceEEEecccceEEEEeecccccc
Confidence            45678999976677778877875544  44433322211122222 34 566777886  33333223367777 355 4


Q ss_pred             EEEcCC----cCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCC
Q 018474          125 EAIVPD----ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKN  200 (355)
Q Consensus       125 ~~~~~~----~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~d  200 (355)
                      +.+...    ..+...+.+++++++.+....                 .|.|+....+|+++-.-...-....+++++.|
T Consensus       293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~-----------------~G~I~lLhakT~eli~s~KieG~v~~~~fsSd  355 (514)
T KOG2055|consen  293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGN-----------------NGHIHLLHAKTKELITSFKIEGVVSDFTFSSD  355 (514)
T ss_pred             ccccCCCCcccchhheeEecCCCCeEEEccc-----------------CceEEeehhhhhhhhheeeeccEEeeEEEecC
Confidence            443222    156777888898875554332                 45677776666654322111223457899999


Q ss_pred             CCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474          201 EDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       201 g~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      ++.||++.. .+.||.+++....  -...+.+.-.-....++.+.+|. |+++..
T Consensus       356 sk~l~~~~~-~GeV~v~nl~~~~--~~~rf~D~G~v~gts~~~S~ng~-ylA~GS  406 (514)
T KOG2055|consen  356 SKELLASGG-TGEVYVWNLRQNS--CLHRFVDDGSVHGTSLCISLNGS-YLATGS  406 (514)
T ss_pred             CcEEEEEcC-CceEEEEecCCcc--eEEEEeecCccceeeeeecCCCc-eEEecc
Confidence            998888764 4699999986542  23334432221234467777777 555544

>PRK01742 tolB translocation protein TolB; Provisional

Probab=98.05  E-value=0.0039  Score=59.92  Aligned_cols=156  Identities=12%  Similarity=0.056  Sum_probs=85.7

Q ss_pred             EEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCCC---cEEEEc-CCC-eEEEcCCcCCcccEEEccCCc-EE
Q 018474           74 WVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEK---GLLKVT-EEG-VEAIVPDASFTNDVIAASDGT-LY  146 (355)
Q Consensus        74 ~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~~---gl~~~~-~~g-~~~~~~~~~~~~~l~~d~dG~-ly  146 (355)
                      .|+..|........+........ ...+.++|+ |.++...+   .|+.++ .+| .+.+.........+.++|||+ |.
T Consensus       185 ~i~i~d~dg~~~~~lt~~~~~v~-~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La  263 (429)
T PRK01742        185 EVRVADYDGFNQFIVNRSSQPLM-SPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLA  263 (429)
T ss_pred             EEEEECCCCCCceEeccCCCccc-cceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEE
Confidence            55555553323333222223345 788889997 43333222   377777 456 555443223344678999995 66


Q ss_pred             EEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCC--CeEEEEEeCCCCC
Q 018474          147 FTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK--FRCRRYWLKGDRA  224 (355)
Q Consensus       147 ~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~--~~i~~~~~~~~~~  224 (355)
                      ++...               ...-.||.+|.++++.+.+..........+++|||+.++++....  -.|+.++.++.. 
T Consensus       264 ~~~~~---------------~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~-  327 (429)
T PRK01742        264 FASSK---------------DGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG-  327 (429)
T ss_pred             EEEec---------------CCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC-
Confidence            55322               012258899988887766654433455689999999877765433  356666554321 


Q ss_pred             cceeEecccCCCCcCceEECCCCCEEEE
Q 018474          225 GILDAFIENLPGGPDNINLAPDGSFWIG  252 (355)
Q Consensus       225 ~~~~~~~~~~~g~p~~i~~d~~G~lwv~  252 (355)
                        .+.+ . ..+  .+..++++|+..+.
T Consensus       328 --~~~l-~-~~~--~~~~~SpDG~~ia~  349 (429)
T PRK01742        328 --ASLV-G-GRG--YSAQISADGKTLVM  349 (429)
T ss_pred             --eEEe-c-CCC--CCccCCCCCCEEEE
Confidence              1222 1 111  23456778874433

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=98.03  E-value=0.0075  Score=52.59  Aligned_cols=242  Identities=11%  Similarity=0.081  Sum_probs=141.0

Q ss_pred             ecCCCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeE-EeeccCCCcccCeEECCCCCEEEEeCCCc-EEEEcC-C
Q 018474           46 LGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLV-NWKHIDSQSLLGLTTTKDGGVILCDNEKG-LLKVTE-E  122 (355)
Q Consensus        46 ~~~~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~-~~~~~~~~p~~gl~~d~~g~L~v~~~~~g-l~~~~~-~  122 (355)
                      ...|.-..-+.++..+++...+.++.|+.++.+|..+|+.. ++.-...... ++++++|.+-.|..+.+. +..++. .
T Consensus        58 ~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVl-sva~s~dn~qivSGSrDkTiklwnt~g  136 (315)
T KOG0279|consen   58 RLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVL-SVAFSTDNRQIVSGSRDKTIKLWNTLG  136 (315)
T ss_pred             eeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceE-EEEecCCCceeecCCCcceeeeeeecc
Confidence            33443344556677755566666788999999999887544 3333334567 899999998888766544 444453 3


Q ss_pred             C--eEEEcCC-cCCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee-ccccccccEEE
Q 018474          123 G--VEAIVPD-ASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFYFANGIAL  197 (355)
Q Consensus       123 g--~~~~~~~-~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~-~~~~~pngi~~  197 (355)
                      +  .+..... -.+++.+.+.|+. +.++...+                +...+-.||.++-+.+... .....-|.+++
T Consensus       137 ~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s----------------~DktvKvWnl~~~~l~~~~~gh~~~v~t~~v  200 (315)
T KOG0279|consen  137 VCKYTIHEDSHREWVSCVRFSPNESNPIIVSAS----------------WDKTVKVWNLRNCQLRTTFIGHSGYVNTVTV  200 (315)
T ss_pred             cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEcc----------------CCceEEEEccCCcchhhccccccccEEEEEE
Confidence            3  3332222 3789999999874 55544332                2445777787666554332 22345688999


Q ss_pred             eCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhc
Q 018474          198 SKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAY  277 (355)
Q Consensus       198 ~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (355)
                      +|||. +....-..+.+..++++..+  ....+. . ......+++.+ .++|++..-.                     
T Consensus       201 SpDGs-lcasGgkdg~~~LwdL~~~k--~lysl~-a-~~~v~sl~fsp-nrywL~~at~---------------------  253 (315)
T KOG0279|consen  201 SPDGS-LCASGGKDGEAMLWDLNEGK--NLYSLE-A-FDIVNSLCFSP-NRYWLCAATA---------------------  253 (315)
T ss_pred             CCCCC-EEecCCCCceEEEEEccCCc--eeEecc-C-CCeEeeEEecC-CceeEeeccC---------------------
Confidence            99998 55555556678888885432  122221 1 11235577876 5788877542                     


Q ss_pred             cchhhcccCCCCCCceEEEEEeCCCCeEEEEEECC-CCC----cccceeEEEEe-CCEEEEeecCCCeEEEeeCC
Q 018474          278 PGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDP-DAT----YISFVTSAAEF-DGNLYLASLQSNFIGILPLD  346 (355)
Q Consensus       278 ~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~-~g~----~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~~~  346 (355)
                                     ..|..+|.+.++.++.+... .|.    .-..+.+++.. +|.-.+..+..+.|.+.++.
T Consensus       254 ---------------~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  254 ---------------TSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             ---------------CceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence                           13555555344444444221 110    01233444433 46666666778888877764

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=98.02  E-value=0.00032  Score=65.08  Aligned_cols=187  Identities=14%  Similarity=0.171  Sum_probs=121.3

Q ss_pred             CCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCC-CEEEEe-CCCcEEEEc-CCC--
Q 018474           49 GCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDG-GVILCD-NEKGLLKVT-EEG--  123 (355)
Q Consensus        49 ~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g-~L~v~~-~~~gl~~~~-~~g--  123 (355)
                      |.-..-.++.+...+..+..++.|+.|..+|.++|+...-.+....|. .+.+.+++ +++++. ..+.|..+| ..|  
T Consensus       256 gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~-cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv  334 (503)
T KOG0282|consen  256 GHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPT-CVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV  334 (503)
T ss_pred             cchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCce-eeecCCCCCcEEEEecCCCcEEEEeccchHH
Confidence            333445566677556667788889999999999998765444455677 88888877 666554 445688888 566  


Q ss_pred             eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCe-EEEee--ccccccccEEEeCC
Q 018474          124 VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE-TTVLH--EGFYFANGIALSKN  200 (355)
Q Consensus       124 ~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~-~~~~~--~~~~~pngi~~~~d  200 (355)
                      ++.+......++++.+-++|.-+++.+.                 ...+..|+-...- ++...  .....| .++++|.
T Consensus       335 vqeYd~hLg~i~~i~F~~~g~rFissSD-----------------dks~riWe~~~~v~ik~i~~~~~hsmP-~~~~~P~  396 (503)
T KOG0282|consen  335 VQEYDRHLGAILDITFVDEGRRFISSSD-----------------DKSVRIWENRIPVPIKNIADPEMHTMP-CLTLHPN  396 (503)
T ss_pred             HHHHHhhhhheeeeEEccCCceEeeecc-----------------CccEEEEEcCCCccchhhcchhhccCc-ceecCCC
Confidence            5555555578999999999988887654                 1223333322221 11111  112233 5789999


Q ss_pred             CCEEEEEeCCCCeEEEEEeCCC-CCcceeEecc-cCCCCcCceEECCCCCEEEEeec
Q 018474          201 EDFVVVCESWKFRCRRYWLKGD-RAGILDAFIE-NLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       201 g~~l~v~~~~~~~i~~~~~~~~-~~~~~~~~~~-~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      ++ .+.+.+..++|..|..... +....+.|-. ..+|++-.+.+++||++.++-..
T Consensus       397 ~~-~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGds  452 (503)
T KOG0282|consen  397 GK-WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDS  452 (503)
T ss_pred             CC-eehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecC
Confidence            98 7788899999999986432 1222233322 34578888899999988776544

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.02  E-value=0.004  Score=60.32  Aligned_cols=155  Identities=15%  Similarity=0.243  Sum_probs=106.9

Q ss_pred             CCCCCCCceEEEeeCCCeEEEEecCCEEEEEEcC-CCeeEE-eeccCCCcccCeEECCCCCEEEEeCCCcEEEEc--CCC
Q 018474           48 EGCVNHPEDVSVVVSKGALYTATRDGWVKYFILH-NETLVN-WKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG  123 (355)
Q Consensus        48 ~~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~-~g~~~~-~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~--~~g  123 (355)
                      .+.-..-.++++.+++..+..++.|+.|..+|.+ .+...+ +.......+ ++++.++|++++....++.+++-  ++|
T Consensus       200 ~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~-~~~f~p~g~~i~Sgs~D~tvriWd~~~~  278 (456)
T KOG0266|consen  200 SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVT-SVAFSPDGNLLVSGSDDGTVRIWDVRTG  278 (456)
T ss_pred             cccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceE-EEEecCCCCEEEEecCCCcEEEEeccCC
Confidence            3455667788888656666677789999999983 434433 322234567 89999999888877777766665  455


Q ss_pred             --eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEE--Eeecccccc---ccEE
Q 018474          124 --VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT--VLHEGFYFA---NGIA  196 (355)
Q Consensus       124 --~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~--~~~~~~~~p---ngi~  196 (355)
                        .+.+......+.++++.++|++.++.+.                 .+.+..||..+++..  ....+...+   .-++
T Consensus       279 ~~~~~l~~hs~~is~~~f~~d~~~l~s~s~-----------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  341 (456)
T KOG0266|consen  279 ECVRKLKGHSDGISGLAFSPDGNLLVSASY-----------------DGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQ  341 (456)
T ss_pred             eEEEeeeccCCceEEEEECCCCCEEEEcCC-----------------CccEEEEECCCCceeeeecccCCCCCCceeEEE
Confidence              5666665578899999999988776533                 567889999888742  222333334   6788


Q ss_pred             EeCCCCEEEEEeCCCCeEEEEEeCC
Q 018474          197 LSKNEDFVVVCESWKFRCRRYWLKG  221 (355)
Q Consensus       197 ~~~dg~~l~v~~~~~~~i~~~~~~~  221 (355)
                      ++|++++++... .++.+..|++..
T Consensus       342 fsp~~~~ll~~~-~d~~~~~w~l~~  365 (456)
T KOG0266|consen  342 FSPNGKYLLSAS-LDRTLKLWDLRS  365 (456)
T ss_pred             ECCCCcEEEEec-CCCeEEEEEccC
Confidence            999999776654 445666677653

>PTZ00421 coronin; Provisional

Probab=97.98  E-value=0.02  Score=55.80  Aligned_cols=152  Identities=17%  Similarity=0.125  Sum_probs=92.3

Q ss_pred             CCCceEEEee-CCCeEEEEecCCEEEEEEcCCCee--------EEeeccCCCcccCeEECCCC-CEEEEeCCCc-EEEEc
Q 018474           52 NHPEDVSVVV-SKGALYTATRDGWVKYFILHNETL--------VNWKHIDSQSLLGLTTTKDG-GVILCDNEKG-LLKVT  120 (355)
Q Consensus        52 ~~p~~i~~d~-~~g~l~~~~~~g~i~~~~~~~g~~--------~~~~~~~~~p~~gl~~d~~g-~L~v~~~~~g-l~~~~  120 (355)
                      ..-.++.+.| ++..|.+++.|+.|..++..++..        ..+......+. .+++.+++ +++++...++ +..+|
T Consensus        76 ~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~-~l~f~P~~~~iLaSgs~DgtVrIWD  154 (493)
T PTZ00421         76 GPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVG-IVSFHPSAMNVLASAGADMVVNVWD  154 (493)
T ss_pred             CCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEE-EEEeCcCCCCEEEEEeCCCEEEEEE
Confidence            3446888886 455788888999999998755421        12211223456 78888765 4555444445 44445


Q ss_pred             -CCC--eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccc--cccccE
Q 018474          121 -EEG--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGF--YFANGI  195 (355)
Q Consensus       121 -~~g--~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~--~~pngi  195 (355)
                       .++  ...+......++++++.++|.+.++.+.                 .+.+..||+.+++...-....  .....+
T Consensus       155 l~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~-----------------Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~  217 (493)
T PTZ00421        155 VERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSK-----------------DKKLNIIDPRDGTIVSSVEAHASAKSQRC  217 (493)
T ss_pred             CCCCeEEEEEcCCCCceEEEEEECCCCEEEEecC-----------------CCEEEEEECCCCcEEEEEecCCCCcceEE
Confidence             355  4444433357889999999987776543                 567888999877643222211  122345


Q ss_pred             EEeCCCCEEEEEeC---CCCeEEEEEeCC
Q 018474          196 ALSKNEDFVVVCES---WKFRCRRYWLKG  221 (355)
Q Consensus       196 ~~~~dg~~l~v~~~---~~~~i~~~~~~~  221 (355)
                      .+.+++..++.+..   ..+.|..||++.
T Consensus       218 ~w~~~~~~ivt~G~s~s~Dr~VklWDlr~  246 (493)
T PTZ00421        218 LWAKRKDLIITLGCSKSQQRQIMLWDTRK  246 (493)
T ss_pred             EEcCCCCeEEEEecCCCCCCeEEEEeCCC
Confidence            67777775554432   245688888753

>PRK01029 tolB translocation protein TolB; Provisional

Probab=97.96  E-value=0.0095  Score=57.17  Aligned_cols=174  Identities=14%  Similarity=0.110  Sum_probs=97.5

Q ss_pred             eEEEeeCCCe---EEEEecC--CEEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCC---CcEEEE--c-CC-
Q 018474           56 DVSVVVSKGA---LYTATRD--GWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNE---KGLLKV--T-EE-  122 (355)
Q Consensus        56 ~i~~d~~~g~---l~~~~~~--g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~---~gl~~~--~-~~-  122 (355)
                      +..+.|++..   +|++..+  ..|+..+..+|+.+.+....+... ..++.+||+ |.++...   ..++..  + .. 
T Consensus       189 sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~-~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g  267 (428)
T PRK01029        189 TPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQL-MPTFSPRKKLLAFISDRYGNPDLFIQSFSLETG  267 (428)
T ss_pred             cceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCcc-ceEECCCCCEEEEEECCCCCcceeEEEeecccC
Confidence            4467765543   3455543  468999998887777655444455 677889995 4443322   134442  3 22 


Q ss_pred             --C-eEEEcCCc-CCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCC--CCeEEEeeccccccccE
Q 018474          123 --G-VEAIVPDA-SFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPK--LKETTVLHEGFYFANGI  195 (355)
Q Consensus       123 --g-~~~~~~~~-~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~--~~~~~~~~~~~~~pngi  195 (355)
                        + .+.+.... .......++|||+ |+++...               .....+|.++.+  +++.+.+..........
T Consensus       268 ~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~---------------~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p  332 (428)
T PRK01029        268 AIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNK---------------DGRPRIYIMQIDPEGQSPRLLTKKYRNSSCP  332 (428)
T ss_pred             CCCcceEeecCCCCCcCCeEECCCCCEEEEEECC---------------CCCceEEEEECcccccceEEeccCCCCccce
Confidence              3 34444321 2334678999995 6665322               012257777643  23344333222223456


Q ss_pred             EEeCCCCEEEEEeCC--CCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCE
Q 018474          196 ALSKNEDFVVVCESW--KFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSF  249 (355)
Q Consensus       196 ~~~~dg~~l~v~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~l  249 (355)
                      +++|||+.++++...  ...|+.+++++...   +.+... +....+....++|+.
T Consensus       333 ~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~---~~Lt~~-~~~~~~p~wSpDG~~  384 (428)
T PRK01029        333 AWSPDGKKIAFCSVIKGVRQICVYDLATGRD---YQLTTS-PENKESPSWAIDSLH  384 (428)
T ss_pred             eECCCCCEEEEEEcCCCCcEEEEEECCCCCe---EEccCC-CCCccceEECCCCCE
Confidence            899999988877543  34688998865432   222211 222345677888863

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.94  E-value=0.0081  Score=56.09  Aligned_cols=85  Identities=18%  Similarity=0.215  Sum_probs=60.5

Q ss_pred             ccCCCC-eEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEE
Q 018474          165 EGKPYG-QLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINL  243 (355)
Q Consensus       165 ~~~~~g-~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~  243 (355)
                      .++..| .+..||..+++++.+..++.....+.+++||+.+.+++ .+..||.+++++.+   .+....+..++..++..
T Consensus       376 igt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaN-dr~el~vididngn---v~~idkS~~~lItdf~~  451 (668)
T COG4946         376 IGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVAN-DRFELWVIDIDNGN---VRLIDKSEYGLITDFDW  451 (668)
T ss_pred             EeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEc-CceEEEEEEecCCC---eeEecccccceeEEEEE
Confidence            444455 78889999999999888888888999999999888876 56789999997543   33222233455566666


Q ss_pred             CCCCCEEEEee
Q 018474          244 APDGSFWIGLI  254 (355)
Q Consensus       244 d~~G~lwv~~~  254 (355)
                      .+++ =|+|-.
T Consensus       452 ~~ns-r~iAYa  461 (668)
T COG4946         452 HPNS-RWIAYA  461 (668)
T ss_pred             cCCc-eeEEEe
Confidence            6655 455543

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.91  E-value=0.01  Score=53.31  Aligned_cols=103  Identities=14%  Similarity=0.160  Sum_probs=61.5

Q ss_pred             CCcccCeEECCCCCE--EEEeCCC-cEEEEc-CCC--eEEEcCCc--CCcccEEEccCCcEEEEeCCCCCCCcccccccc
Q 018474           93 SQSLLGLTTTKDGGV--ILCDNEK-GLLKVT-EEG--VEAIVPDA--SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMA  164 (355)
Q Consensus        93 ~~p~~gl~~d~~g~L--~v~~~~~-gl~~~~-~~g--~~~~~~~~--~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~  164 (355)
                      .+.+ +++.++....  .++---+ -.+.+| .+|  ...+....  .|-=+-++++||++.+++.+.            
T Consensus         5 ~RgH-~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd------------   71 (305)
T PF07433_consen    5 ARGH-GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTEND------------   71 (305)
T ss_pred             cccc-ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccc------------
Confidence            4567 8888874433  3333221 256667 466  44444332  344456899999654444321            


Q ss_pred             ccCCCCeEEEEeCCCC--eEEEeeccccccccEEEeCCCCEEEEEe
Q 018474          165 EGKPYGQLRKYDPKLK--ETTVLHEGFYFANGIALSKNEDFVVVCE  208 (355)
Q Consensus       165 ~~~~~g~l~~~dp~~~--~~~~~~~~~~~pngi~~~~dg~~l~v~~  208 (355)
                      ..+..|.|-+||...+  ++..+....-.|.-+.+.|||+.|.|++
T Consensus        72 ~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVAN  117 (305)
T PF07433_consen   72 YETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVAN  117 (305)
T ss_pred             cCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEc
Confidence            0133677889998622  2233344555688899999999899987

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=97.89  E-value=0.004  Score=55.16  Aligned_cols=227  Identities=12%  Similarity=0.103  Sum_probs=125.0

Q ss_pred             CCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCC-cEEEEc-CCC--eEEE
Q 018474           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEK-GLLKVT-EEG--VEAI  127 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~-gl~~~~-~~g--~~~~  127 (355)
                      ...+++.+.+-|..|-+|+.+|+|..+|..|-...+.....-+|.+++++.++|++.++.+.+ .+...| ..|  ++++
T Consensus        24 ~~a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri  103 (405)
T KOG1273|consen   24 PLAECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI  103 (405)
T ss_pred             CccceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE
Confidence            348899999777778899999999999986655433222112333389999999988876553 344444 345  3332


Q ss_pred             c--CCc-------------------CCcccEEEccCCcEEEEe-CCC------CCCC-ccccccccccCCCCeEEEEeCC
Q 018474          128 V--PDA-------------------SFTNDVIAASDGTLYFTV-AST------KYTP-TDFYKDMAEGKPYGQLRKYDPK  178 (355)
Q Consensus       128 ~--~~~-------------------~~~~~l~~d~dG~ly~~d-~~~------~~~~-~~~~~~~~~~~~~g~l~~~dp~  178 (355)
                      .  .+.                   ..|.=+.+++.-.-++.. ...      ..+. ...-.-|+.|+..|.+..||..
T Consensus       104 rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~  183 (405)
T KOG1273|consen  104 RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE  183 (405)
T ss_pred             EccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc
Confidence            1  110                   111112222111111111 100      0000 0112236678888999999987


Q ss_pred             CCeEEEee--ccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCC----CCCccee---EecccCCC-CcCceEECCCCC
Q 018474          179 LKETTVLH--EGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKG----DRAGILD---AFIENLPG-GPDNINLAPDGS  248 (355)
Q Consensus       179 ~~~~~~~~--~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~----~~~~~~~---~~~~~~~g-~p~~i~~d~~G~  248 (355)
                      +-+...-.  +.......|-++..|+++ +.++...-|..|+++.    ++.++.+   .+-+-... .=..+.++.+|.
T Consensus       184 t~e~vas~rits~~~IK~I~~s~~g~~l-iiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dge  262 (405)
T KOG1273|consen  184 TLECVASFRITSVQAIKQIIVSRKGRFL-IINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGE  262 (405)
T ss_pred             hheeeeeeeechheeeeEEEEeccCcEE-EEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCcc
Confidence            66543211  112233457788888854 5566666677788742    1222222   11110000 114577899998


Q ss_pred             EEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCC
Q 018474          249 FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDA  314 (355)
Q Consensus       249 lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g  314 (355)
                      +.+|....                                   ...++......|..+..++++.|
T Consensus       263 Yv~a~s~~-----------------------------------aHaLYIWE~~~GsLVKILhG~kg  293 (405)
T KOG1273|consen  263 YVCAGSAR-----------------------------------AHALYIWEKSIGSLVKILHGTKG  293 (405)
T ss_pred             EEEecccc-----------------------------------ceeEEEEecCCcceeeeecCCch
Confidence            88877531                                   23566666657888888888776

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.84  E-value=0.0061  Score=56.43  Aligned_cols=160  Identities=14%  Similarity=0.198  Sum_probs=80.0

Q ss_pred             CCCe-EEEEec--CCEEEEEEcCCCeeEEeeccCC-CcccCeEECCCCC-EEEEeCCCcEEEEc-CCC-eEEEcCC-cCC
Q 018474           62 SKGA-LYTATR--DGWVKYFILHNETLVNWKHIDS-QSLLGLTTTKDGG-VILCDNEKGLLKVT-EEG-VEAIVPD-ASF  133 (355)
Q Consensus        62 ~~g~-l~~~~~--~g~i~~~~~~~g~~~~~~~~~~-~p~~gl~~d~~g~-L~v~~~~~gl~~~~-~~g-~~~~~~~-~~~  133 (355)
                      ++.. ||.+..  ...++.+|.++++.+++....+ ... |..+.++++ +|.....+.|.+++ .+. .+.+..- ..+
T Consensus        46 dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~-g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~  124 (386)
T PF14583_consen   46 DGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTF-GGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDW  124 (386)
T ss_dssp             TS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TT-T-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTE
T ss_pred             CCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCcc-ceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCccc
Confidence            3444 444443  4578999999999999876432 244 555554544 55454566899999 455 4333221 112


Q ss_pred             c--ccEEEccCCcEEEEeCCCC--C---CCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCC-CEEE
Q 018474          134 T--NDVIAASDGTLYFTVASTK--Y---TPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNE-DFVV  205 (355)
Q Consensus       134 ~--~~l~~d~dG~ly~~d~~~~--~---~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg-~~l~  205 (355)
                      .  -..+++.|++.++.....+  +   .......++++..+..+|+++|.++|+.+++...-..-+-+.++|.. ..+-
T Consensus       125 ~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~  204 (386)
T PF14583_consen  125 KGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIM  204 (386)
T ss_dssp             EEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEE
T ss_pred             ccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEE
Confidence            2  1234566787776543211  1   11123345666677779999999999998886554333445555532 3455


Q ss_pred             EEeCC-----CCeEEEEEeCCC
Q 018474          206 VCESW-----KFRCRRYWLKGD  222 (355)
Q Consensus       206 v~~~~-----~~~i~~~~~~~~  222 (355)
                      +|..+     ..|||.++.+|.
T Consensus       205 fCHEGpw~~Vd~RiW~i~~dg~  226 (386)
T PF14583_consen  205 FCHEGPWDLVDQRIWTINTDGS  226 (386)
T ss_dssp             EEE-S-TTTSS-SEEEEETTS-
T ss_pred             EeccCCcceeceEEEEEEcCCC
Confidence            55543     358888887664

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.80  E-value=0.0024  Score=54.39  Aligned_cols=114  Identities=15%  Similarity=0.095  Sum_probs=74.4

Q ss_pred             CCcccCeEECCCCCEEEEeCC---------CcEEEEc-CCC-eEEEcCCcCCcccEEEccCC-cEEEEeCCCCCCCcccc
Q 018474           93 SQSLLGLTTTKDGGVILCDNE---------KGLLKVT-EEG-VEAIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFY  160 (355)
Q Consensus        93 ~~p~~gl~~d~~g~L~v~~~~---------~gl~~~~-~~g-~~~~~~~~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~  160 (355)
                      ++-+ .-..|++|+.|+++..         +|.++.. ..+ ++.+-....-+|+++.|.|. .+|+.|+.. |.+..  
T Consensus       109 nR~N-DgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln-~~V~a--  184 (310)
T KOG4499|consen  109 NRLN-DGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLN-YEVDA--  184 (310)
T ss_pred             cccc-cCccCCCCceeeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCc-eEEee--
Confidence            4455 5668899999998753         2333333 444 55554444778999999876 799998751 22222  


Q ss_pred             ccccccCCCCeEEEEeCCCCeEE---Ee---e----ccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCC
Q 018474          161 KDMAEGKPYGQLRKYDPKLKETT---VL---H----EGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDR  223 (355)
Q Consensus       161 ~~~~~~~~~g~l~~~dp~~~~~~---~~---~----~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~  223 (355)
                                  |.||-.+|.+.   ++   .    .....|.|++++-+|+ ||++....++|.++++...+
T Consensus       185 ------------~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~-L~Va~~ng~~V~~~dp~tGK  244 (310)
T KOG4499|consen  185 ------------YDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGN-LYVATFNGGTVQKVDPTTGK  244 (310)
T ss_pred             ------------eecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCc-EEEEEecCcEEEEECCCCCc
Confidence                        33444444321   11   0    1235699999999987 99999889999999986543

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=97.78  E-value=0.019  Score=53.06  Aligned_cols=185  Identities=15%  Similarity=0.155  Sum_probs=107.2

Q ss_pred             CeEECCCCCEEEEeCCCcEEEEc--CCC--eEEEcCC--cCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCe
Q 018474           98 GLTTTKDGGVILCDNEKGLLKVT--EEG--VEAIVPD--ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQ  171 (355)
Q Consensus        98 gl~~d~~g~L~v~~~~~gl~~~~--~~g--~~~~~~~--~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~  171 (355)
                      ++...+.|.-++....++.+.+.  .+|  +......  .-...+.++.|||.|+.+...                 .+-
T Consensus       308 ~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~-----------------d~~  370 (506)
T KOG0289|consen  308 GLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTP-----------------DGV  370 (506)
T ss_pred             eeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCC-----------------Cce
Confidence            77778888877766677877776  366  4333332  134667889999999876432                 445


Q ss_pred             EEEEeCCCCeEEEeeccccc-cccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEec-ccCCCCcCceEECCCCCE
Q 018474          172 LRKYDPKLKETTVLHEGFYF-ANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFI-ENLPGGPDNINLAPDGSF  249 (355)
Q Consensus       172 l~~~dp~~~~~~~~~~~~~~-pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~g~p~~i~~d~~G~l  249 (355)
                      +-.||.+.+....-..+... -..|+|+.+|= ..++....+.|..||++.  ...++++. +...+ ...+.+|..|.+
T Consensus       371 vkiwdlks~~~~a~Fpght~~vk~i~FsENGY-~Lat~add~~V~lwDLRK--l~n~kt~~l~~~~~-v~s~~fD~SGt~  446 (506)
T KOG0289|consen  371 VKIWDLKSQTNVAKFPGHTGPVKAISFSENGY-WLATAADDGSVKLWDLRK--LKNFKTIQLDEKKE-VNSLSFDQSGTY  446 (506)
T ss_pred             EEEEEcCCccccccCCCCCCceeEEEeccCce-EEEEEecCCeEEEEEehh--hcccceeecccccc-ceeEEEcCCCCe
Confidence            55566554431111112111 24578888875 444455566699999854  33444442 11111 244779999988


Q ss_pred             EEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeE--EEEEECCCCCcccceeEEEEeC
Q 018474          250 WIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKI--IRDFNDPDATYISFVTSAAEFD  327 (355)
Q Consensus       250 wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~--~~~~~~~~g~~~~~~~~~~~~~  327 (355)
                      .+.....                                    -.|+.+..++-++  +..+++..|    ..+.+.+.+
T Consensus       447 L~~~g~~------------------------------------l~Vy~~~k~~k~W~~~~~~~~~sg----~st~v~Fg~  486 (506)
T KOG0289|consen  447 LGIAGSD------------------------------------LQVYICKKKTKSWTEIKELADHSG----LSTGVRFGE  486 (506)
T ss_pred             EEeecce------------------------------------eEEEEEecccccceeeehhhhccc----ccceeeecc
Confidence            7776331                                    2577777633333  334445444    345566666


Q ss_pred             CEEEEeecCCCeEEEe
Q 018474          328 GNLYLASLQSNFIGIL  343 (355)
Q Consensus       328 g~L~v~~~~~~~i~~~  343 (355)
                      ..-|+++-..+++.++
T Consensus       487 ~aq~l~s~smd~~l~~  502 (506)
T KOG0289|consen  487 HAQYLASTSMDAILRL  502 (506)
T ss_pred             cceEEeeccchhheEE
Confidence            6677776666666443

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=97.78  E-value=0.0038  Score=57.91  Aligned_cols=138  Identities=20%  Similarity=0.297  Sum_probs=79.8

Q ss_pred             eEEEEeCCCCeEEEee-------ccccccccEEEeC---CCCEEEEEeCCCCeEEEEEeCCCCCc-----ceeEecccCC
Q 018474          171 QLRKYDPKLKETTVLH-------EGFYFANGIALSK---NEDFVVVCESWKFRCRRYWLKGDRAG-----ILDAFIENLP  235 (355)
Q Consensus       171 ~l~~~dp~~~~~~~~~-------~~~~~pngi~~~~---dg~~l~v~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~~  235 (355)
                      ++|++||.++.++.+.       .....+.|+|+..   +|+...+.....+.+.+|.+.....+     ..+.|  ..+
T Consensus       130 ~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f--~~~  207 (381)
T PF02333_consen  130 RLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREF--KVG  207 (381)
T ss_dssp             EEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEE--E-S
T ss_pred             EEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEe--cCC
Confidence            6899999888877653       2334478999864   45533333345577888888422111     23333  355


Q ss_pred             CCcCceEECC-CCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeC--CCCeEEEEE--E
Q 018474          236 GGPDNINLAP-DGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDG--NDGKIIRDF--N  310 (355)
Q Consensus       236 g~p~~i~~d~-~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~g~~~~~~--~  310 (355)
                      +.+.+++.|. .|.+|++...                                     .||++|+.  +.+..-+.+  .
T Consensus       208 sQ~EGCVVDDe~g~LYvgEE~-------------------------------------~GIW~y~Aep~~~~~~~~v~~~  250 (381)
T PF02333_consen  208 SQPEGCVVDDETGRLYVGEED-------------------------------------VGIWRYDAEPEGGNDRTLVASA  250 (381)
T ss_dssp             S-EEEEEEETTTTEEEEEETT-------------------------------------TEEEEEESSCCC-S--EEEEEB
T ss_pred             CcceEEEEecccCCEEEecCc-------------------------------------cEEEEEecCCCCCCcceeeecc
Confidence            6789998875 4789999865                                     48999964  122222222  1


Q ss_pred             CCCCCcccceeEEEE-----eCCEEEEeecCCCeEEEeeCCCC
Q 018474          311 DPDATYISFVTSAAE-----FDGNLYLASLQSNFIGILPLDGP  348 (355)
Q Consensus       311 ~~~g~~~~~~~~~~~-----~~g~L~v~~~~~~~i~~~~~~~~  348 (355)
                      ...++ ...+-++..     ..|+|.+++-..+...+|+..+.
T Consensus       251 ~g~~l-~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~  292 (381)
T PF02333_consen  251 DGDGL-VADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP  292 (381)
T ss_dssp             SSSSB--S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred             ccccc-ccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            22222 223333332     23789999999999999998764

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.78  E-value=0.002  Score=63.10  Aligned_cols=87  Identities=13%  Similarity=0.056  Sum_probs=61.8

Q ss_pred             CeEEEEeCCC-----CeEEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCC------CcceeEecc--cCCC
Q 018474          170 GQLRKYDPKL-----KETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDR------AGILDAFIE--NLPG  236 (355)
Q Consensus       170 g~l~~~dp~~-----~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~------~~~~~~~~~--~~~g  236 (355)
                      +.+-.+|..+     .++.....-...|.|++++|||+++|+++-....+.+++++..+      +........  .+.-
T Consensus       296 n~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGl  375 (635)
T PRK02888        296 SKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGL  375 (635)
T ss_pred             CEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCC
Confidence            4588888876     35555566677899999999999999999989999999985421      111111111  1111


Q ss_pred             CcCceEECCCCCEEEEeecC
Q 018474          237 GPDNINLAPDGSFWIGLIKM  256 (355)
Q Consensus       237 ~p~~i~~d~~G~lwv~~~~~  256 (355)
                      -|-...+|.+|+.|++.+-.
T Consensus       376 GPLHTaFDg~G~aytslf~d  395 (635)
T PRK02888        376 GPLHTAFDGRGNAYTTLFLD  395 (635)
T ss_pred             CcceEEECCCCCEEEeEeec
Confidence            36778899999999988764

>PRK01029 tolB translocation protein TolB; Provisional

Probab=97.76  E-value=0.044  Score=52.63  Aligned_cols=162  Identities=11%  Similarity=-0.014  Sum_probs=79.8

Q ss_pred             EEEEEEcCCCeeEEeeccCCCcccCeEECCCCC---E-EEEeCC--CcEEEEcC-CC-eEEEcCCcCCcccEEEccCC-c
Q 018474           74 WVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG---V-ILCDNE--KGLLKVTE-EG-VEAIVPDASFTNDVIAASDG-T  144 (355)
Q Consensus        74 ~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~---L-~v~~~~--~gl~~~~~-~g-~~~~~~~~~~~~~l~~d~dG-~  144 (355)
                      .|+..|...+..+.+........ .-++.+||+   + |+....  ..|+..+. .| .+.+...........++||| .
T Consensus       166 ~l~~~d~dG~~~~~lt~~~~~~~-sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~  244 (428)
T PRK01029        166 ELWSVDYDGQNLRPLTQEHSLSI-TPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKL  244 (428)
T ss_pred             eEEEEcCCCCCceEcccCCCCcc-cceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCE
Confidence            56677764444444433222222 446778874   2 344322  24888884 55 55554432333456889999 5


Q ss_pred             EEEEeCCCCCCCccccccccccCCCCeEEEEeCCC---CeEEEeecc-ccccccEEEeCCCCEEEEEeCC--CCeEEEEE
Q 018474          145 LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKL---KETTVLHEG-FYFANGIALSKNEDFVVVCESW--KFRCRRYW  218 (355)
Q Consensus       145 ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~---~~~~~~~~~-~~~pngi~~~~dg~~l~v~~~~--~~~i~~~~  218 (355)
                      |.++....             +.....+..++.++   ++.+.+... .......+++|||+.++++...  ...|++++
T Consensus       245 Laf~s~~~-------------g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~  311 (428)
T PRK01029        245 LAFISDRY-------------GNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQ  311 (428)
T ss_pred             EEEEECCC-------------CCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEE
Confidence            66653220             01111222244432   233333322 1223356899999977776532  33688877


Q ss_pred             eCCCCCcceeEecccCCCCcCceEECCCCCEEE
Q 018474          219 LKGDRAGILDAFIENLPGGPDNINLAPDGSFWI  251 (355)
Q Consensus       219 ~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv  251 (355)
                      +++.. +..+.+. ...+.......++||+..+
T Consensus       312 ~~~~g-~~~~~lt-~~~~~~~~p~wSPDG~~La  342 (428)
T PRK01029        312 IDPEG-QSPRLLT-KKYRNSSCPAWSPDGKKIA  342 (428)
T ss_pred             Ccccc-cceEEec-cCCCCccceeECCCCCEEE
Confidence            64321 1122221 1112223456788887433

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=97.75  E-value=0.00071  Score=66.08  Aligned_cols=75  Identities=17%  Similarity=0.184  Sum_probs=46.4

Q ss_pred             CCcccEEEccCCcEEEEeCCCCCCCc-------cccccccccCCCCeEEEEeCCCCeEEEeeccc--cccccEEEeCCCC
Q 018474          132 SFTNDVIAASDGTLYFTVASTKYTPT-------DFYKDMAEGKPYGQLRKYDPKLKETTVLHEGF--YFANGIALSKNED  202 (355)
Q Consensus       132 ~~~~~l~~d~dG~ly~~d~~~~~~~~-------~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~--~~pngi~~~~dg~  202 (355)
                      ..|..|++|++|+||++.........       ...+.+...... .+..+++.+++++.+....  ....|++++||++
T Consensus       436 ~sPDNL~~d~~G~LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~-~~~~~~~~~g~~~rf~~~P~gaE~tG~~fspDg~  514 (524)
T PF05787_consen  436 ASPDNLAFDPDGNLWIQEDGGGSNNNLPGVTPDGEVYDFARNDGN-NVWAYDPDTGELKRFLVGPNGAEITGPCFSPDGR  514 (524)
T ss_pred             CCCCceEECCCCCEEEEeCCCCCCcccccccccCceeeeeecccc-eeeeccccccceeeeccCCCCcccccceECCCCC
Confidence            78888999999999987654221100       000111110101 1556788888887776443  4457899999999


Q ss_pred             EEEEE
Q 018474          203 FVVVC  207 (355)
Q Consensus       203 ~l~v~  207 (355)
                      .+|+.
T Consensus       515 tlFvn  519 (524)
T PF05787_consen  515 TLFVN  519 (524)
T ss_pred             EEEEE
Confidence            88874

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=97.73  E-value=0.0055  Score=52.66  Aligned_cols=142  Identities=12%  Similarity=0.099  Sum_probs=95.9

Q ss_pred             EEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEcCC--C-eEEEcCCcCC
Q 018474           57 VSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEE--G-VEAIVPDASF  133 (355)
Q Consensus        57 i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~~--g-~~~~~~~~~~  133 (355)
                      +.+-..+..+..++.++.|..+|..+|+..+-......+. ++-+..+|++.....+.++.-.+..  + ++.+..+ ..
T Consensus       149 v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~Vt-SlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P-~n  226 (334)
T KOG0278|consen  149 VLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVT-SLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMP-CN  226 (334)
T ss_pred             EEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCc-ceeeccCCCEEEEecCceeEEeccccccceeeccCc-cc
Confidence            3344345556666778999999999997665554455677 8889899998877767677666642  4 5554333 45


Q ss_pred             cccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEe-ecccccc-ccEEEeCCCCEEEEEeCCC
Q 018474          134 TNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL-HEGFYFA-NGIALSKNEDFVVVCESWK  211 (355)
Q Consensus       134 ~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~-~~~~~~p-ngi~~~~dg~~l~v~~~~~  211 (355)
                      +++-...|+-.+|++...                 ...+|+||=.|++-... ..+-..| ..+.++|||. +|.+.+..
T Consensus       227 V~SASL~P~k~~fVaGge-----------------d~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE-~yAsGSED  288 (334)
T KOG0278|consen  227 VESASLHPKKEFFVAGGE-----------------DFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGE-LYASGSED  288 (334)
T ss_pred             cccccccCCCceEEecCc-----------------ceEEEEEeccCCceeeecccCCCCceEEEEECCCCc-eeeccCCC
Confidence            666677788888887433                 45788888877754333 2332233 5688999998 89888776


Q ss_pred             CeEEEEE
Q 018474          212 FRCRRYW  218 (355)
Q Consensus       212 ~~i~~~~  218 (355)
                      +.|..+.
T Consensus       289 GTirlWQ  295 (334)
T KOG0278|consen  289 GTIRLWQ  295 (334)
T ss_pred             ceEEEEE
Confidence            6555444

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=97.73  E-value=0.016  Score=51.53  Aligned_cols=223  Identities=14%  Similarity=0.188  Sum_probs=120.5

Q ss_pred             CCcccCeEECCCCCEEEEeCCCcEEEE-cCC-----C-e---EE-EcCC-----cCCcccEEEccCCcEEEEeCCCCCCC
Q 018474           93 SQSLLGLTTTKDGGVILCDNEKGLLKV-TEE-----G-V---EA-IVPD-----ASFTNDVIAASDGTLYFTVASTKYTP  156 (355)
Q Consensus        93 ~~p~~gl~~d~~g~L~v~~~~~gl~~~-~~~-----g-~---~~-~~~~-----~~~~~~l~~d~dG~ly~~d~~~~~~~  156 (355)
                      -.+. ||++.+.+-+||++.+.++..+ +-+     | .   .. ++..     ...|.++++.....+-++... +...
T Consensus        23 ~N~W-Gia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g-~~~~  100 (336)
T TIGR03118        23 RNAW-GLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEG-ITGP  100 (336)
T ss_pred             cccc-eeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCC-cccc
Confidence            3588 9999999999999987664433 322     3 1   11 2211     135666666543332232211 0000


Q ss_pred             ccccccccccCCCCeEEEEeCCCCeE------EEeecc--ccccccEEEeCC--CCEEEEEeCCCCeEEEEEeCCCCCcc
Q 018474          157 TDFYKDMAEGKPYGQLRKYDPKLKET------TVLHEG--FYFANGIALSKN--EDFVVVCESWKFRCRRYWLKGDRAGI  226 (355)
Q Consensus       157 ~~~~~~~~~~~~~g~l~~~dp~~~~~------~~~~~~--~~~pngi~~~~d--g~~l~v~~~~~~~i~~~~~~~~~~~~  226 (355)
                          ...+-.+..|.|--|+|.-+..      .++-..  ...=.|+|+...  +.+||.++-..++|-+|+-+=.+...
T Consensus       101 ----a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~  176 (336)
T TIGR03118       101 ----SRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPL  176 (336)
T ss_pred             ----eeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccC
Confidence                0111123355666666532222      112111  122246776643  67899999988899999742211111


Q ss_pred             eeEecc-cCC-C-CcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCC
Q 018474          227 LDAFIE-NLP-G-GPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDG  303 (355)
Q Consensus       227 ~~~~~~-~~~-g-~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g  303 (355)
                      ...|.+ .+| + -|-|+.-- .|++||.-......-.+                       .+-+...+-|-+||+ +|
T Consensus       177 ~g~F~DP~iPagyAPFnIqni-g~~lyVtYA~qd~~~~d-----------------------~v~G~G~G~VdvFd~-~G  231 (336)
T TIGR03118       177 PGSFIDPALPAGYAPFNVQNL-GGTLYVTYAQQDADRND-----------------------EVAGAGLGYVNVFTL-NG  231 (336)
T ss_pred             CCCccCCCCCCCCCCcceEEE-CCeEEEEEEecCCcccc-----------------------cccCCCcceEEEEcC-CC
Confidence            112332 222 1 35566543 47899987552111000                       011234468999999 99


Q ss_pred             eEEEEEECCCCCcccceeEEEE-----eCCEEEEeecCCCeEEEeeCC
Q 018474          304 KIIRDFNDPDATYISFVTSAAE-----FDGNLYLASLQSNFIGILPLD  346 (355)
Q Consensus       304 ~~~~~~~~~~g~~~~~~~~~~~-----~~g~L~v~~~~~~~i~~~~~~  346 (355)
                      +.++.+.+..-+..++--.++.     -.|.|.||++...+|-.++..
T Consensus       232 ~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~  279 (336)
T TIGR03118       232 QLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQ  279 (336)
T ss_pred             cEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCC
Confidence            9999997644332222222222     249999999999999999865

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.70  E-value=0.036  Score=54.23  Aligned_cols=112  Identities=12%  Similarity=0.067  Sum_probs=65.0

Q ss_pred             CCeEEEEecCCEEEEEEcCCCeeEEeeccCC-----C----cccCeEECCCCCEEEEeCCCcEEEEcC-CC-eEE-EcCC
Q 018474           63 KGALYTATRDGWVKYFILHNETLVNWKHIDS-----Q----SLLGLTTTKDGGVILCDNEKGLLKVTE-EG-VEA-IVPD  130 (355)
Q Consensus        63 ~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~-----~----p~~gl~~d~~g~L~v~~~~~gl~~~~~-~g-~~~-~~~~  130 (355)
                      ++.+|+++.++.++.+|.++|+..--.....     .    .. +.+...++++|+++..+.++.+|. +| ..- ....
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~-g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~  139 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNR-GVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGNN  139 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccC-CcEEccCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence            7789999989999999998886431111111     0    11 334432389999987777999994 77 322 1111


Q ss_pred             cC------CcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEe
Q 018474          131 AS------FTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL  185 (355)
Q Consensus       131 ~~------~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~  185 (355)
                      ..      .-...++. ++.+|++.....+         ......+.++.+|.++|+....
T Consensus       140 ~~~~~~~~i~ssP~v~-~~~v~vg~~~~~~---------~~~~~~g~v~alD~~TG~~~W~  190 (488)
T cd00216         140 DQVPPGYTMTGAPTIV-KKLVIIGSSGAEF---------FACGVRGALRAYDVETGKLLWR  190 (488)
T ss_pred             CCcCcceEecCCCEEE-CCEEEEecccccc---------ccCCCCcEEEEEECCCCceeeE
Confidence            11      11222333 3677776543111         0012256899999998876543

The alignment model contains an 8-bladed beta-propeller.

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=97.68  E-value=0.0051  Score=56.43  Aligned_cols=186  Identities=17%  Similarity=0.149  Sum_probs=110.2

Q ss_pred             CCCCCCCceEEEeeC--CCeEEEEecCCEEEEEEcCCCee-EEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEc--CC
Q 018474           48 EGCVNHPEDVSVVVS--KGALYTATRDGWVKYFILHNETL-VNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT--EE  122 (355)
Q Consensus        48 ~~~~~~p~~i~~d~~--~g~l~~~~~~g~i~~~~~~~g~~-~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~--~~  122 (355)
                      .|....-.++.+.|.  +..+-.++.||.+..++..+.+. ..+.....+.. .+++.++|+...+...+.-+++-  .+
T Consensus       214 ~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs-~VafHPsG~~L~TasfD~tWRlWD~~t  292 (459)
T KOG0272|consen  214 RGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVS-RVAFHPSGKFLGTASFDSTWRLWDLET  292 (459)
T ss_pred             eccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhhe-eeeecCCCceeeecccccchhhccccc
Confidence            355556667778865  33677788899887777644322 22222234556 78899999988877666555554  23


Q ss_pred             CeEEEc--CCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecc-ccccccEEEeC
Q 018474          123 GVEAIV--PDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG-FYFANGIALSK  199 (355)
Q Consensus       123 g~~~~~--~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~-~~~pngi~~~~  199 (355)
                      +.+.+.  .....+.++++-+||.|-.+....               ..++  .||..+++-..+..+ .....+++++|
T Consensus       293 k~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD---------------~~~R--vWDlRtgr~im~L~gH~k~I~~V~fsP  355 (459)
T KOG0272|consen  293 KSELLLQEGHSKGVFSIAFQPDGSLAATGGLD---------------SLGR--VWDLRTGRCIMFLAGHIKEILSVAFSP  355 (459)
T ss_pred             chhhHhhcccccccceeEecCCCceeeccCcc---------------chhh--eeecccCcEEEEecccccceeeEeECC
Confidence            312111  122679999999999998875431               1222  345556654444333 34456889999


Q ss_pred             CCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECC-CCCEEEEeec
Q 018474          200 NEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAP-DGSFWIGLIK  255 (355)
Q Consensus       200 dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~-~G~lwv~~~~  255 (355)
                      +|- .+.+.+..+.+.++++...+.  .-+ +......-..+.+++ .|.+.+++..
T Consensus       356 NGy-~lATgs~Dnt~kVWDLR~r~~--ly~-ipAH~nlVS~Vk~~p~~g~fL~Tasy  408 (459)
T KOG0272|consen  356 NGY-HLATGSSDNTCKVWDLRMRSE--LYT-IPAHSNLVSQVKYSPQEGYFLVTASY  408 (459)
T ss_pred             Cce-EEeecCCCCcEEEeeeccccc--cee-cccccchhhheEecccCCeEEEEccc
Confidence            995 667777777777788754322  111 112222345567886 4556655543

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=97.67  E-value=0.0073  Score=56.44  Aligned_cols=158  Identities=20%  Similarity=0.292  Sum_probs=89.2

Q ss_pred             CeEECCCCCEEEEeCCC-------------c-EEEEcCCC-e---------EEEcCCcCCcccEEEccC-CcEEEEeCCC
Q 018474           98 GLTTTKDGGVILCDNEK-------------G-LLKVTEEG-V---------EAIVPDASFTNDVIAASD-GTLYFTVAST  152 (355)
Q Consensus        98 gl~~d~~g~L~v~~~~~-------------g-l~~~~~~g-~---------~~~~~~~~~~~~l~~d~d-G~ly~~d~~~  152 (355)
                      .|++++||.|||+....             | +++++..+ +         +++......|.+++++|. |.||+++...
T Consensus       181 ~l~f~pDG~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~~a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~  260 (399)
T COG2133         181 RLVFGPDGKLYVTTGSNGDPALAQDNVSLAGKVLRIDRAGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWTTEHGP  260 (399)
T ss_pred             cEEECCCCcEEEEeCCCCCcccccCccccccceeeeccCcccccCCCCCCcceEEeccCCccceeecCCCCcEEEEecCC
Confidence            58999999999976433             1 33443222 1         122222278999999996 8999998763


Q ss_pred             C-CCCccccccccccCCCCeEEEE-----eCCC---CeEE-Eee------ccccccccEEEeCCC------CEEEEEeCC
Q 018474          153 K-YTPTDFYKDMAEGKPYGQLRKY-----DPKL---KETT-VLH------EGFYFANGIALSKNE------DFVVVCESW  210 (355)
Q Consensus       153 ~-~~~~~~~~~~~~~~~~g~l~~~-----dp~~---~~~~-~~~------~~~~~pngi~~~~dg------~~l~v~~~~  210 (355)
                      - .-..+....+-.+...|--++|     ++.-   .... ...      .....|-|++|....      +.++++.-.
T Consensus       261 d~~~~~Deln~i~~G~nYGWP~~~~G~~~~g~~~~~~~~~~~~~~p~~~~~~h~ApsGmaFy~G~~fP~~r~~lfV~~hg  340 (399)
T COG2133         261 DALRGPDELNSIRPGKNYGWPYAYFGQNYDGRAIPDGTVVAGAIQPVYTWAPHIAPSGMAFYTGDLFPAYRGDLFVGAHG  340 (399)
T ss_pred             CcccCcccccccccCCccCCceeccCcccCccccCCCcccccccCCceeeccccccceeEEecCCcCccccCcEEEEeec
Confidence            1 1122233333333333333333     1110   0000 000      111336789988531      248888876


Q ss_pred             CCeEEEEEeCCCCCcceeEecc-cCCCCcCceEECCCCCEEEEeec
Q 018474          211 KFRCRRYWLKGDRAGILDAFIE-NLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       211 ~~~i~~~~~~~~~~~~~~~~~~-~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      .-.+.+.+.+++..-..+.|+. ...+.|.++++..||-|+|.+..
T Consensus       341 sw~~~~~~~~g~~~~~~~~fl~~d~~gR~~dV~v~~DGallv~~D~  386 (399)
T COG2133         341 SWPVLRLRPDGNYKVVLTGFLSGDLGGRPRDVAVAPDGALLVLTDQ  386 (399)
T ss_pred             ceeEEEeccCCCcceEEEEEEecCCCCcccceEECCCCeEEEeecC
Confidence            6667777776652222233332 23478999999999999999865

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=97.67  E-value=0.012  Score=50.28  Aligned_cols=171  Identities=13%  Similarity=0.097  Sum_probs=97.2

Q ss_pred             EeeCCCeEEEEecCCEEEEEEcCCCeeE-EeeccCCCcccCeEECCCCCEEEEeCC-CcEEEEc-CCC--eEEEcCCcCC
Q 018474           59 VVVSKGALYTATRDGWVKYFILHNETLV-NWKHIDSQSLLGLTTTKDGGVILCDNE-KGLLKVT-EEG--VEAIVPDASF  133 (355)
Q Consensus        59 ~d~~~g~l~~~~~~g~i~~~~~~~g~~~-~~~~~~~~p~~gl~~d~~g~L~v~~~~-~gl~~~~-~~g--~~~~~~~~~~  133 (355)
                      +..+++....+..+..|..++|..|... .|...+.... ..+...|+.-+.+..+ +.+..+| .+|  .+.+......
T Consensus        25 yN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVl-D~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aq  103 (307)
T KOG0316|consen   25 YNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVL-DAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQ  103 (307)
T ss_pred             EccCCCEEEEcCCCceEEeecccccceeeeecCCCceee-eccccccccccccCCCCceEEEEEcccCeeeeecccccce
Confidence            4433444455556788888999888654 4443344444 4555445544443333 3466666 577  5666666678


Q ss_pred             cccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccE-EEeCCCCEEEEEeCCCC
Q 018474          134 TNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGI-ALSKNEDFVVVCESWKF  212 (355)
Q Consensus       134 ~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi-~~~~dg~~l~v~~~~~~  212 (355)
                      +|.+.+..+-.+.++.+-                 .-.+-.||=.+...++++.--..-.|+ .++-.+ +.+++.+-.+
T Consensus       104 VNtV~fNeesSVv~Sgsf-----------------D~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~-heIvaGS~DG  165 (307)
T KOG0316|consen  104 VNTVRFNEESSVVASGSF-----------------DSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE-HEIVAGSVDG  165 (307)
T ss_pred             eeEEEecCcceEEEeccc-----------------cceeEEEEcccCCCCccchhhhhcCceeEEEecc-cEEEeeccCC
Confidence            899998888777776443                 224566666555554432111111221 233333 4778888889


Q ss_pred             eEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEe
Q 018474          213 RCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGL  253 (355)
Q Consensus       213 ~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~  253 (355)
                      ++.+|++..+   +.  ..+.+.--...+.+.++|+.-.+.
T Consensus       166 tvRtydiR~G---~l--~sDy~g~pit~vs~s~d~nc~La~  201 (307)
T KOG0316|consen  166 TVRTYDIRKG---TL--SSDYFGHPITSVSFSKDGNCSLAS  201 (307)
T ss_pred             cEEEEEeecc---ee--ehhhcCCcceeEEecCCCCEEEEe
Confidence            9999998532   21  222222113446789999855444

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=97.67  E-value=0.055  Score=51.27  Aligned_cols=177  Identities=15%  Similarity=0.169  Sum_probs=102.2

Q ss_pred             eEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccC----CCcccCeEECCCCCEEEEeCCCcEEEEcC-CC--eEEEc
Q 018474           56 DVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHID----SQSLLGLTTTKDGGVILCDNEKGLLKVTE-EG--VEAIV  128 (355)
Q Consensus        56 ~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~----~~p~~gl~~d~~g~L~v~~~~~gl~~~~~-~g--~~~~~  128 (355)
                      ++.|.|+...+...+.+..+..+|..+++...-...+    ..-. |..+- +++|......+-|-.+++ +.  .+++.
T Consensus       240 alsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqv-G~lWq-kd~lItVSl~G~in~ln~~d~~~~~~i~  317 (603)
T KOG0318|consen  240 ALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQV-GCLWQ-KDHLITVSLSGTINYLNPSDPSVLKVIS  317 (603)
T ss_pred             EEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEE-EEEEe-CCeEEEEEcCcEEEEecccCCChhheec
Confidence            5666666666666666776667776666543321111    2223 44453 445544443322444444 33  44444


Q ss_pred             CCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecc--ccccccEEEeCCCCEEEE
Q 018474          129 PDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG--FYFANGIALSKNEDFVVV  206 (355)
Q Consensus       129 ~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~--~~~pngi~~~~dg~~l~v  206 (355)
                      .....+..+++.+||...++-+.                 .|.+..|+-.++.-..+...  ...-.+++.+..+. ++-
T Consensus       318 GHnK~ITaLtv~~d~~~i~Sgsy-----------------DG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~-~~t  379 (603)
T KOG0318|consen  318 GHNKSITALTVSPDGKTIYSGSY-----------------DGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGE-LFT  379 (603)
T ss_pred             ccccceeEEEEcCCCCEEEeecc-----------------CceEEEEecCCccccccccccccceEEEEeecCCCc-EEE
Confidence            44478889999999965554332                 67788888766654433211  22345677776554 555


Q ss_pred             EeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474          207 CESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       207 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      +. ..+.|.++++.+......+.+  .++..|.+++..++|.+-+....
T Consensus       380 ~g-~Dd~l~~~~~~~~~~t~~~~~--~lg~QP~~lav~~d~~~avv~~~  425 (603)
T KOG0318|consen  380 IG-WDDTLRVISLKDNGYTKSEVV--KLGSQPKGLAVLSDGGTAVVACI  425 (603)
T ss_pred             Ee-cCCeEEEEecccCccccccee--ecCCCceeEEEcCCCCEEEEEec
Confidence            44 678999999866544443322  35567999999998865554433

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=97.64  E-value=0.027  Score=49.59  Aligned_cols=151  Identities=16%  Similarity=0.170  Sum_probs=100.9

Q ss_pred             CCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeE-EeeccCCCcccCeEECC-CCCEEEEeCCCcEEE-Ec-CCC-
Q 018474           49 GCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLV-NWKHIDSQSLLGLTTTK-DGGVILCDNEKGLLK-VT-EEG-  123 (355)
Q Consensus        49 ~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~-~~~~~~~~p~~gl~~d~-~g~L~v~~~~~gl~~-~~-~~g-  123 (355)
                      |.-..-.+..+- +++.+..++.|.....+|.++|+.. .|....+... ++.+.+ +++.||...-+...+ .| ..+ 
T Consensus       143 gHtgylScC~f~-dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~-slsl~p~~~ntFvSg~cD~~aklWD~R~~~  220 (343)
T KOG0286|consen  143 GHTGYLSCCRFL-DDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVM-SLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ  220 (343)
T ss_pred             CccceeEEEEEc-CCCceEecCCCceEEEEEcccceEEEEecCCcccEE-EEecCCCCCCeEEecccccceeeeeccCcc
Confidence            333344455555 5888999999999999999888654 4433345566 777777 889999764444333 34 455 


Q ss_pred             -eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCC-eEEEeecc--ccccccEEEeC
Q 018474          124 -VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLK-ETTVLHEG--FYFANGIALSK  199 (355)
Q Consensus       124 -~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~-~~~~~~~~--~~~pngi~~~~  199 (355)
                       ++.+......+|.+.+-|+|.-+.+.+.                 .+..-.||.... ++..+...  ....+.++|+.
T Consensus       221 c~qtF~ghesDINsv~ffP~G~afatGSD-----------------D~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~  283 (343)
T KOG0286|consen  221 CVQTFEGHESDINSVRFFPSGDAFATGSD-----------------DATCRLYDLRADQELAVYSHDSIICGITSVAFSK  283 (343)
T ss_pred             eeEeecccccccceEEEccCCCeeeecCC-----------------CceeEEEeecCCcEEeeeccCcccCCceeEEEcc
Confidence             7777776688999999999988887554                 333444555433 44444322  34457899999


Q ss_pred             CCCEEEEEeCCCCeEEEEEe
Q 018474          200 NEDFVVVCESWKFRCRRYWL  219 (355)
Q Consensus       200 dg~~l~v~~~~~~~i~~~~~  219 (355)
                      -|+.||. .....++.++|.
T Consensus       284 SGRlLfa-gy~d~~c~vWDt  302 (343)
T KOG0286|consen  284 SGRLLFA-GYDDFTCNVWDT  302 (343)
T ss_pred             cccEEEe-eecCCceeEeec
Confidence            9995554 456678888874

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=97.63  E-value=0.00089  Score=59.30  Aligned_cols=225  Identities=18%  Similarity=0.248  Sum_probs=119.8

Q ss_pred             ceEEEeeCCCeEEEEecCCEEEEEEcCCCee-EEeecc-CCCcccCeEECCCCCEEEEeCCCcEEEEc--CCC--eEEEc
Q 018474           55 EDVSVVVSKGALYTATRDGWVKYFILHNETL-VNWKHI-DSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG--VEAIV  128 (355)
Q Consensus        55 ~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~-~~~~~~-~~~p~~gl~~d~~g~L~v~~~~~gl~~~~--~~g--~~~~~  128 (355)
                      -+|.+.++..-+-.|+.+|.|..+...+|.- ++|... .-... ++.+.+|+.-......+..+|+.  +.|  ++.+.
T Consensus       267 lci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt-~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfr  345 (508)
T KOG0275|consen  267 LCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVT-CLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFR  345 (508)
T ss_pred             EEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCee-EEEEccCcchhhcccccceEEEeccccchhHHHhc
Confidence            3444543344445566677776666656642 222111 11244 67888887655555566677876  456  66665


Q ss_pred             CCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeE-EEe---eccccccccEEEeCCCCEE
Q 018474          129 PDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKET-TVL---HEGFYFANGIALSKNEDFV  204 (355)
Q Consensus       129 ~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~-~~~---~~~~~~pngi~~~~dg~~l  204 (355)
                      ....++|+..+.+||.-.++-++                 .|.+-.|+.++.+- ..+   .++....+-+-+-++-.++
T Consensus       346 GHsSyvn~a~ft~dG~~iisaSs-----------------DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~  408 (508)
T KOG0275|consen  346 GHSSYVNEATFTDDGHHIISASS-----------------DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHF  408 (508)
T ss_pred             CccccccceEEcCCCCeEEEecC-----------------CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceE
Confidence            55589999999999976666544                 45566666554431 111   1222212222333334467


Q ss_pred             EEEeCCCCeEEEEEeCCCCCcceeEecccC--CCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhh
Q 018474          205 VVCESWKFRCRRYWLKGDRAGILDAFIENL--PGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLIS  282 (355)
Q Consensus       205 ~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (355)
                      ++|+. .+.|+..++.|.-   .+.|..+.  .|---+.+.++.|. |+=+.+                           
T Consensus       409 iVCNr-sntv~imn~qGQv---VrsfsSGkREgGdFi~~~lSpkGe-wiYcig---------------------------  456 (508)
T KOG0275|consen  409 IVCNR-SNTVYIMNMQGQV---VRSFSSGKREGGDFINAILSPKGE-WIYCIG---------------------------  456 (508)
T ss_pred             EEEcC-CCeEEEEeccceE---EeeeccCCccCCceEEEEecCCCc-EEEEEc---------------------------
Confidence            77774 5678888876532   22222111  11111234667774 222222                           


Q ss_pred             cccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeCCEEEEeecCCCeEE
Q 018474          283 LLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIG  341 (355)
Q Consensus       283 ~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~  341 (355)
                              +.+-+++|+-..|+....+...+-    .+.++..+..+=.+.++..+.+.
T Consensus       457 --------ED~vlYCF~~~sG~LE~tl~VhEk----dvIGl~HHPHqNllAsYsEDgll  503 (508)
T KOG0275|consen  457 --------EDGVLYCFSVLSGKLERTLPVHEK----DVIGLTHHPHQNLLASYSEDGLL  503 (508)
T ss_pred             --------cCcEEEEEEeecCceeeeeecccc----cccccccCcccchhhhhcccchh
Confidence                    114578887667887766665443    23334444445455555555443

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=97.58  E-value=0.038  Score=55.57  Aligned_cols=152  Identities=8%  Similarity=0.070  Sum_probs=87.9

Q ss_pred             CCCCceEEEeeCCCeEEEEecCCEEEEEEcCCC--eeEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEc-CCC-eEE
Q 018474           51 VNHPEDVSVVVSKGALYTATRDGWVKYFILHNE--TLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT-EEG-VEA  126 (355)
Q Consensus        51 ~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g--~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~-~~g-~~~  126 (355)
                      ..|-..|.+|+++..++++..+|-|..++....  ....+...+.... +++.+. +.+..++..+-+.+|. +.+ ...
T Consensus        13 t~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~-~ia~~s-~~f~~~s~~~tv~~y~fps~~~~~   90 (933)
T KOG1274|consen   13 TGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVS-SIACYS-NHFLTGSEQNTVLRYKFPSGEEDT   90 (933)
T ss_pred             cCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeE-EEeecc-cceEEeeccceEEEeeCCCCCccc
Confidence            355678999988888888888998888875332  2222111223344 666653 3555555444455554 344 332


Q ss_pred             EcCCc-CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecccccc-ccEEEeCCCCEE
Q 018474          127 IVPDA-SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFA-NGIALSKNEDFV  204 (355)
Q Consensus       127 ~~~~~-~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~p-ngi~~~~dg~~l  204 (355)
                      +..++ .-+++++++.+|+..++.+.                 .-.|-..+..+...+....+...| -++.++|++++|
T Consensus        91 iL~Rftlp~r~~~v~g~g~~iaagsd-----------------D~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fL  153 (933)
T KOG1274|consen   91 ILARFTLPIRDLAVSGSGKMIAAGSD-----------------DTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFL  153 (933)
T ss_pred             eeeeeeccceEEEEecCCcEEEeecC-----------------ceeEEEEeccccchheeecccCCceeeeeEcCCCCEE
Confidence            22222 34778899999976655433                 112333333333333333344333 468899999976


Q ss_pred             EEEeCCCCeEEEEEeCCC
Q 018474          205 VVCESWKFRCRRYWLKGD  222 (355)
Q Consensus       205 ~v~~~~~~~i~~~~~~~~  222 (355)
                      -++. ..+.|..|+++..
T Consensus       154 Avss-~dG~v~iw~~~~~  170 (933)
T KOG1274|consen  154 AVSS-CDGKVQIWDLQDG  170 (933)
T ss_pred             EEEe-cCceEEEEEcccc
Confidence            6665 5688999998653

>PLN00181 protein SPA1-RELATED; Provisional

Probab=97.55  E-value=0.15  Score=53.17  Aligned_cols=149  Identities=12%  Similarity=0.020  Sum_probs=87.1

Q ss_pred             CceEEEeeCCCeEEEEecCCEEEEEEcCCC----eeE----EeeccCCCcccCeEECCC-CCEEEEeCCCcEEEE-c-CC
Q 018474           54 PEDVSVVVSKGALYTATRDGWVKYFILHNE----TLV----NWKHIDSQSLLGLTTTKD-GGVILCDNEKGLLKV-T-EE  122 (355)
Q Consensus        54 p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g----~~~----~~~~~~~~p~~gl~~d~~-g~L~v~~~~~gl~~~-~-~~  122 (355)
                      -.++++++++..+.++..++.|..++..+.    ...    .......... ++++.+. ++..++...+|.+++ + .+
T Consensus       486 V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~-~l~~~~~~~~~las~~~Dg~v~lWd~~~  564 (793)
T PLN00181        486 VCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLS-GICWNSYIKSQVASSNFEGVVQVWDVAR  564 (793)
T ss_pred             EEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCcee-eEEeccCCCCEEEEEeCCCeEEEEECCC
Confidence            456888866666777888999998886321    110    0011112345 6777653 454444444555544 5 34


Q ss_pred             C--eEEEcCCcCCcccEEEcc-CCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEe-
Q 018474          123 G--VEAIVPDASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALS-  198 (355)
Q Consensus       123 g--~~~~~~~~~~~~~l~~d~-dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~-  198 (355)
                      +  +..+......+.++++++ +|.++++.+.                 .+.+..||..+++.............+++. 
T Consensus       565 ~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~-----------------Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~  627 (793)
T PLN00181        565 SQLVTEMKEHEKRVWSIDYSSADPTLLASGSD-----------------DGSVKLWSINQGVSIGTIKTKANICCVQFPS  627 (793)
T ss_pred             CeEEEEecCCCCCEEEEEEcCCCCCEEEEEcC-----------------CCEEEEEECCCCcEEEEEecCCCeEEEEEeC
Confidence            4  444444346788999986 6777776543                 567888887665432222222233455664 


Q ss_pred             CCCCEEEEEeCCCCeEEEEEeCC
Q 018474          199 KNEDFVVVCESWKFRCRRYWLKG  221 (355)
Q Consensus       199 ~dg~~l~v~~~~~~~i~~~~~~~  221 (355)
                      ++++ .+++....+.|..|++..
T Consensus       628 ~~g~-~latgs~dg~I~iwD~~~  649 (793)
T PLN00181        628 ESGR-SLAFGSADHKVYYYDLRN  649 (793)
T ss_pred             CCCC-EEEEEeCCCeEEEEECCC
Confidence            4566 455556678899999854

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.54  E-value=0.1  Score=51.02  Aligned_cols=254  Identities=9%  Similarity=-0.001  Sum_probs=124.9

Q ss_pred             CeEEEEecCCEEEEEEcCCCeeEEeeccCCC------cccCeEECCCCCEEEEeC---------CCcEEEEcC-CC-eEE
Q 018474           64 GALYTATRDGWVKYFILHNETLVNWKHIDSQ------SLLGLTTTKDGGVILCDN---------EKGLLKVTE-EG-VEA  126 (355)
Q Consensus        64 g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~------p~~gl~~d~~g~L~v~~~---------~~gl~~~~~-~g-~~~  126 (355)
                      +.+|+++.+|.|+.+|.++|+..--......      ...+..++ ++.+|++..         .+.++.+|. +| ..-
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~-~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W  189 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV-KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLW  189 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE-CCEEEEeccccccccCCCCcEEEEEECCCCceee
Confidence            7999999999999999999975422221111      11023343 477888653         235888884 77 221


Q ss_pred             ---EcCCc--C-----------------CcccEEEcc-CCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEE
Q 018474          127 ---IVPDA--S-----------------FTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT  183 (355)
Q Consensus       127 ---~~~~~--~-----------------~~~~l~~d~-dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~  183 (355)
                         .....  .                 .-...++|+ .|.+|+......................+.++.+|.++|+..
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~  269 (488)
T cd00216         190 RFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK  269 (488)
T ss_pred             EeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE
Confidence               11110  0                 002356674 568999865421000000000011123458999999999876


Q ss_pred             Eeeccc-------cccccEEEe----CCCC--EEEEEeCCCCeEEEEEeCCCC-CcceeEecccCCCCcCceEECCCCCE
Q 018474          184 VLHEGF-------YFANGIALS----KNED--FVVVCESWKFRCRRYWLKGDR-AGILDAFIENLPGGPDNINLAPDGSF  249 (355)
Q Consensus       184 ~~~~~~-------~~pngi~~~----~dg~--~l~v~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~g~p~~i~~d~~G~l  249 (355)
                      ...+..       ..+....+.    -|+.  .++++.+..++++.++.++.+ .-+.+..       -.++..++ +.+
T Consensus       270 W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-------~~~~~~~~-~~v  341 (488)
T cd00216         270 WFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-------EQPMAYDP-GLV  341 (488)
T ss_pred             EEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-------ccccccCC-ceE
Confidence            553211       111111111    2333  233334456789999985432 2222211       12234444 678


Q ss_pred             EEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCC------cccceeEE
Q 018474          250 WIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDAT------YISFVTSA  323 (355)
Q Consensus       250 wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~------~~~~~~~~  323 (355)
                      |++........    ...   ..    .+        ......+.+..+|.++|+.+=........      .......+
T Consensus       342 yv~~~~~~~~~----~~~---~~----~~--------~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~  402 (488)
T cd00216         342 YLGAFHIPLGL----PPQ---KK----KR--------CKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSL  402 (488)
T ss_pred             EEccccccccC----ccc---cc----CC--------CCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcce
Confidence            88653210000    000   00    00        00133478999998788865444332100      00112234


Q ss_pred             EEeCCEEEEeecCCCeEEEeeCC
Q 018474          324 AEFDGNLYLASLQSNFIGILPLD  346 (355)
Q Consensus       324 ~~~~g~L~v~~~~~~~i~~~~~~  346 (355)
                      ...++.||+++. ..+|.-++..
T Consensus       403 ~~~g~~v~~g~~-dG~l~ald~~  424 (488)
T cd00216         403 ATAGNLVFAGAA-DGYFRAFDAT  424 (488)
T ss_pred             EecCCeEEEECC-CCeEEEEECC
Confidence            556678888874 5667666653

The alignment model contains an 8-bladed beta-propeller.

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=97.53  E-value=0.0041  Score=56.45  Aligned_cols=186  Identities=15%  Similarity=0.168  Sum_probs=111.7

Q ss_pred             eEecCCCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeecc-CCCcccCe-----------EECC--------
Q 018474           44 TKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI-DSQSLLGL-----------TTTK--------  103 (355)
Q Consensus        44 ~~~~~~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~-~~~p~~gl-----------~~d~--------  103 (355)
                      .+...|.-..-.++.+. .+|.+|.++.|+.|..++..+|+.-+.... ...++ .|           ++|+        
T Consensus       240 ~~~lsgHT~~VTCvrwG-G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN-~lalsTdy~LRtgaf~~t~~~~~~~  317 (480)
T KOG0271|consen  240 VRTLSGHTASVTCVRWG-GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVN-HLALSTDYVLRTGAFDHTGRKPKSF  317 (480)
T ss_pred             EEEeccCccceEEEEEc-CCceEEecCCCceEEEEEccchhHHHhhcccchhee-eeeccchhhhhccccccccccCCCh
Confidence            34445666667788887 789999999999999998877753221110 00011 11           1111        


Q ss_pred             -----------------CCCEEEEeCCC-cEEEEcCCC----eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccc
Q 018474          104 -----------------DGGVILCDNEK-GLLKVTEEG----VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYK  161 (355)
Q Consensus       104 -----------------~g~L~v~~~~~-gl~~~~~~g----~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~  161 (355)
                                       .|.-.|....+ -++..++..    ++.+......+|++.++|||+...+-+-          
T Consensus       318 se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSF----------  387 (480)
T KOG0271|consen  318 SEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASF----------  387 (480)
T ss_pred             HHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeec----------
Confidence                             22224433333 355555322    4444444578999999999976655332          


Q ss_pred             cccccCCCCeEEEEeCCCCeEEEeecc-ccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCc
Q 018474          162 DMAEGKPYGQLRKYDPKLKETTVLHEG-FYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDN  240 (355)
Q Consensus       162 ~~~~~~~~g~l~~~dp~~~~~~~~~~~-~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~  240 (355)
                             ...+-.||..+|++-.-..+ ...-.-++.+.|.+ |+++.+....|-.++++..+      +...+||..|.
T Consensus       388 -------DkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsR-LlVS~SkDsTLKvw~V~tkK------l~~DLpGh~DE  453 (480)
T KOG0271|consen  388 -------DKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSR-LLVSGSKDSTLKVWDVRTKK------LKQDLPGHADE  453 (480)
T ss_pred             -------ccceeeeeCCCcchhhhhhhccceeEEEEeccCcc-EEEEcCCCceEEEEEeeeee------ecccCCCCCce
Confidence                   22455566667765332222 23335689999987 88988888899999985432      23367777776


Q ss_pred             eE-E--CCCCCEEEEeec
Q 018474          241 IN-L--APDGSFWIGLIK  255 (355)
Q Consensus       241 i~-~--d~~G~lwv~~~~  255 (355)
                      +. +  .+||..-++...
T Consensus       454 Vf~vDwspDG~rV~sggk  471 (480)
T KOG0271|consen  454 VFAVDWSPDGQRVASGGK  471 (480)
T ss_pred             EEEEEecCCCceeecCCC
Confidence            53 3  478876665543

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.52  E-value=0.0091  Score=50.11  Aligned_cols=39  Identities=18%  Similarity=0.261  Sum_probs=30.2

Q ss_pred             CeEEEEeCCCCeEEEeec-------------cccccccEEEeCCCCEEEEEe
Q 018474          170 GQLRKYDPKLKETTVLHE-------------GFYFANGIALSKNEDFVVVCE  208 (355)
Q Consensus       170 g~l~~~dp~~~~~~~~~~-------------~~~~pngi~~~~dg~~l~v~~  208 (355)
                      .++.|++|++|++....+             ....+||||..|+++.+|++.
T Consensus       196 ~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         196 TRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             cceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            478899999998765532             123589999999998899875

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=97.51  E-value=0.054  Score=50.90  Aligned_cols=139  Identities=17%  Similarity=0.118  Sum_probs=81.4

Q ss_pred             EeeCCCeEEEEecCCEEEEEEcCCCeeEEeecc-C---CCcccCeEECCCCCEEEEeCCCcEEEEcC-CC-eEEEcCCcC
Q 018474           59 VVVSKGALYTATRDGWVKYFILHNETLVNWKHI-D---SQSLLGLTTTKDGGVILCDNEKGLLKVTE-EG-VEAIVPDAS  132 (355)
Q Consensus        59 ~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~-~---~~p~~gl~~d~~g~L~v~~~~~gl~~~~~-~g-~~~~~~~~~  132 (355)
                      .+ .++.+|+++.+|.|+.+|+.+++.. |... .   .... +-....+|++|+++..+.+++++. +| .........
T Consensus        65 ~~-~dg~v~~~~~~G~i~A~d~~~g~~~-W~~~~~~~~~~~~-~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~  141 (370)
T COG1520          65 AD-GDGTVYVGTRDGNIFALNPDTGLVK-WSYPLLGAVAQLS-GPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGG  141 (370)
T ss_pred             Ee-eCCeEEEecCCCcEEEEeCCCCcEE-ecccCcCcceecc-CceEEeCCeEEEecccceEEEEECCCCcEEEEEecCC
Confidence            44 6889999999999999999888743 2111 1   1222 222334899999997755999996 78 332211111


Q ss_pred             --CcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeec-----cccccccEEEeCCCCEEE
Q 018474          133 --FTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE-----GFYFANGIALSKNEDFVV  205 (355)
Q Consensus       133 --~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~-----~~~~pngi~~~~dg~~l~  205 (355)
                        ...+-.+-.++.+|+.+.                  .+.++.+|+++++.....+     ......... ..++ .+|
T Consensus       142 ~~~~~~~~v~~~~~v~~~s~------------------~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~-~vy  201 (370)
T COG1520         142 SPYYASPPVVGDGTVYVGTD------------------DGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-IASG-TVY  201 (370)
T ss_pred             CeEEecCcEEcCcEEEEecC------------------CCeEEEEEccCCcEEEEEecCCccccccccCce-eecc-eEE
Confidence              111223445778887631                  4578888888786643321     111111122 3344 377


Q ss_pred             EEeCC-CCeEEEEEeC
Q 018474          206 VCESW-KFRCRRYWLK  220 (355)
Q Consensus       206 v~~~~-~~~i~~~~~~  220 (355)
                      +.... ...++.++.+
T Consensus       202 ~~~~~~~~~~~a~~~~  217 (370)
T COG1520         202 VGSDGYDGILYALNAE  217 (370)
T ss_pred             EecCCCcceEEEEEcc
Confidence            77543 4478888874

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=97.51  E-value=0.0068  Score=59.60  Aligned_cols=182  Identities=11%  Similarity=0.057  Sum_probs=108.6

Q ss_pred             eEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEc---CCC-eEEEcCCc
Q 018474           56 DVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT---EEG-VEAIVPDA  131 (355)
Q Consensus        56 ~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~---~~g-~~~~~~~~  131 (355)
                      +..+.|+.+.|..+++|+.+..+...+..-.........|.-.+.+.|.|.-|++.++++..++.   ... .+.++...
T Consensus       456 g~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghl  535 (707)
T KOG0263|consen  456 GCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHL  535 (707)
T ss_pred             eeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccc
Confidence            34455556666667778877777765554333223333343045566666555544445555554   223 55566666


Q ss_pred             CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecccccc-ccEEEeCCCCEEEEEeCC
Q 018474          132 SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFA-NGIALSKNEDFVVVCESW  210 (355)
Q Consensus       132 ~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~p-ngi~~~~dg~~l~v~~~~  210 (355)
                      ..+..+.+.|+.+..+|.++                 .-.+-.||-.+|....+..+...| ..++++|+|++| .+...
T Consensus       536 sDV~cv~FHPNs~Y~aTGSs-----------------D~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~L-aSg~e  597 (707)
T KOG0263|consen  536 SDVDCVSFHPNSNYVATGSS-----------------DRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYL-ASGDE  597 (707)
T ss_pred             cccceEEECCcccccccCCC-----------------CceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceE-eeccc
Confidence            77888889998876666544                 224555666566554444444333 468999999855 44445


Q ss_pred             CCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeecCCc
Q 018474          211 KFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQ  258 (355)
Q Consensus       211 ~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~  258 (355)
                      .+.|..||+.+.+.  ...+.+. .+..+.+.+..+|+++++..+..+
T Consensus       598 d~~I~iWDl~~~~~--v~~l~~H-t~ti~SlsFS~dg~vLasgg~Dns  642 (707)
T KOG0263|consen  598 DGLIKIWDLANGSL--VKQLKGH-TGTIYSLSFSRDGNVLASGGADNS  642 (707)
T ss_pred             CCcEEEEEcCCCcc--hhhhhcc-cCceeEEEEecCCCEEEecCCCCe
Confidence            67888888854321  1112222 445567889999999999877654

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=97.50  E-value=0.035  Score=49.80  Aligned_cols=203  Identities=20%  Similarity=0.210  Sum_probs=105.2

Q ss_pred             EEEEec-CCEEEEEEcC-CCeeEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEE---c--C-CC-e-----EEEc---
Q 018474           66 LYTATR-DGWVKYFILH-NETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKV---T--E-EG-V-----EAIV---  128 (355)
Q Consensus        66 l~~~~~-~g~i~~~~~~-~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~---~--~-~g-~-----~~~~---  128 (355)
                      |-++++ .|+++.+..+ +|++......-.+|- |++.. .++||+++.. .|+++   +  . .+ .     ..+.   
T Consensus        20 la~sTYQagkL~~ig~~~~g~l~~~~r~F~r~M-Gl~~~-~~~l~~~t~~-qiw~f~~~~n~l~~~~~~~~~D~~yvPr~   96 (335)
T TIGR03032        20 LAVTTYQAGKLFFIGLQPNGELDVFERTFPRPM-GLAVS-PQSLTLGTRY-QLWRFANVDNLLPAGQTHPGYDRLYVPRA   96 (335)
T ss_pred             EEEEeeecceEEEEEeCCCCcEEEEeeccCccc-eeeee-CCeEEEEEcc-eeEEcccccccccccccCCCCCeEEeeee
Confidence            444443 4666666433 565555444446677 88885 5689999854 67777   2  0 11 0     0011   


Q ss_pred             ---CCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEe----------eccccccccE
Q 018474          129 ---PDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL----------HEGFYFANGI  195 (355)
Q Consensus       129 ---~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~----------~~~~~~pngi  195 (355)
                         ...-.++++++ .++.+||.++.  |               ..+-.+++. ..+...          .++-..=||+
T Consensus        97 ~~~TGdidiHdia~-~~~~l~fVNT~--f---------------SCLatl~~~-~SF~P~WkPpFIs~la~eDRCHLNGl  157 (335)
T TIGR03032        97 SYVTGDIDAHDLAL-GAGRLLFVNTL--F---------------SCLATVSPD-YSFVPLWKPPFISKLAPEDRCHLNGM  157 (335)
T ss_pred             eeeccCcchhheee-cCCcEEEEECc--c---------------eeEEEECCC-CccccccCCccccccCccCceeecce
Confidence               11156788888 67788887754  1               234444432 222111          1122345899


Q ss_pred             EEeCCCCEEEEEeCCCCeEEEEEeCCCCCcc-------eeEecccCCCCcCceEECCCCCEEEEeecCCchhhHhhhcch
Q 018474          196 ALSKNEDFVVVCESWKFRCRRYWLKGDRAGI-------LDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCR  268 (355)
Q Consensus       196 ~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~-------~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~  268 (355)
                      |+. ||+--|++......+-.-|-+....+.       -+++++++ .+|.+-.. -+|++|+.....            
T Consensus       158 A~~-~g~p~yVTa~~~sD~~~gWR~~~~~gG~vidv~s~evl~~GL-smPhSPRW-hdgrLwvldsgt------------  222 (335)
T TIGR03032       158 ALD-DGEPRYVTALSQSDVADGWREGRRDGGCVIDIPSGEVVASGL-SMPHSPRW-YQGKLWLLNSGR------------  222 (335)
T ss_pred             eee-CCeEEEEEEeeccCCcccccccccCCeEEEEeCCCCEEEcCc-cCCcCCcE-eCCeEEEEECCC------------
Confidence            994 677788776433211111111110111       12222222 23444333 468999998652            


Q ss_pred             hHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeCCEEEEee
Q 018474          269 EKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLAS  334 (355)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~  334 (355)
                                              +.+.++|+++|+....-.-| |    ...++...++.+++|-
T Consensus       223 ------------------------Gev~~vD~~~G~~e~Va~vp-G----~~rGL~f~G~llvVgm  259 (335)
T TIGR03032       223 ------------------------GELGYVDPQAGKFQPVAFLP-G----FTRGLAFAGDFAFVGL  259 (335)
T ss_pred             ------------------------CEEEEEcCCCCcEEEEEECC-C----CCcccceeCCEEEEEe
Confidence                                    57999999448765554443 2    3344555555555553

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.49  E-value=0.052  Score=47.21  Aligned_cols=65  Identities=15%  Similarity=0.138  Sum_probs=44.9

Q ss_pred             EeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECC-CCCEEEEeCCCcEEEEcC-CC
Q 018474           59 VVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTK-DGGVILCDNEKGLLKVTE-EG  123 (355)
Q Consensus        59 ~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~-~g~L~v~~~~~gl~~~~~-~g  123 (355)
                      .|.++|.+|+++.|+..+.+|+++..-..-.+-++....+-++++ ++.||++...+.++++++ ++
T Consensus       101 ~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~  167 (354)
T KOG4649|consen  101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY  167 (354)
T ss_pred             EcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCC
Confidence            444689999999999999999976543322333332221445665 789999998877888884 44

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.49  E-value=0.0094  Score=55.68  Aligned_cols=131  Identities=13%  Similarity=0.124  Sum_probs=88.4

Q ss_pred             eEEEEecCC-EEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCCCcEEEEc-CCC-eEEEcCCc-CCcccEEE
Q 018474           65 ALYTATRDG-WVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEKGLLKVT-EEG-VEAIVPDA-SFTNDVIA  139 (355)
Q Consensus        65 ~l~~~~~~g-~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~~gl~~~~-~~g-~~~~~~~~-~~~~~l~~  139 (355)
                      .+.+++.+| .+..++..+++.+++...-+++. .+..+++|. +.++.....|+.++ .+| ++.+.... ..+-++++
T Consensus       373 ~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~-av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~  451 (668)
T COG4946         373 GDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIE-AVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDW  451 (668)
T ss_pred             ceEEeccCCceEEEEecCCceEEEeeCCccceE-EEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEE
Confidence            466677776 77788888888888877777888 999999998 66666556788888 678 77765443 67778888


Q ss_pred             ccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeC
Q 018474          140 ASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCES  209 (355)
Q Consensus       140 d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~  209 (355)
                      +++++.. +=+-     +       ++--+..+-.||..+++.-.+.+....-..=|++||++.||+-..
T Consensus       452 ~~nsr~i-AYaf-----P-------~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~  508 (668)
T COG4946         452 HPNSRWI-AYAF-----P-------EGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSA  508 (668)
T ss_pred             cCCceeE-EEec-----C-------cceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEec
Confidence            8877533 2110     0       111133566677777776554443333333479999999998764

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=97.48  E-value=0.034  Score=52.43  Aligned_cols=147  Identities=12%  Similarity=0.093  Sum_probs=97.2

Q ss_pred             CCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEcCC-C--eEEE
Q 018474           51 VNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEE-G--VEAI  127 (355)
Q Consensus        51 ~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~~-g--~~~~  127 (355)
                      +..+..++.. .++ +|+++..+.|.+-...++-.....-.+..-. |++..++.++|++....+.+++-.+ .  .+.+
T Consensus       329 ~G~iRtv~e~-~~d-i~vGTtrN~iL~Gt~~~~f~~~v~gh~delw-gla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~  405 (626)
T KOG2106|consen  329 FGPIRTVAEG-KGD-ILVGTTRNFILQGTLENGFTLTVQGHGDELW-GLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKI  405 (626)
T ss_pred             cCCeeEEecC-CCc-EEEeeccceEEEeeecCCceEEEEeccccee-eEEcCCChhheeeccCcceEEEccCCceeEEEE
Confidence            4556677776 344 9999998888887775553322222233567 9999999999988766666666532 2  2222


Q ss_pred             cCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEE
Q 018474          128 VPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVC  207 (355)
Q Consensus       128 ~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~  207 (355)
                      ..  .....+.++|.|.+-++                  +..|+.+.+|.++..+..+......-+.+.++|||.++-+.
T Consensus       406 ~~--d~~~~~~fhpsg~va~G------------------t~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvg  465 (626)
T KOG2106|consen  406 IE--DPAECADFHPSGVVAVG------------------TATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVG  465 (626)
T ss_pred             ec--CceeEeeccCcceEEEe------------------eccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEe
Confidence            22  23556678888855443                  33678888998776655555454445778999999966665


Q ss_pred             eCCCCeEEEEEeCC
Q 018474          208 ESWKFRCRRYWLKG  221 (355)
Q Consensus       208 ~~~~~~i~~~~~~~  221 (355)
                       +..+.|+.|.++.
T Consensus       466 -s~d~~iyiy~Vs~  478 (626)
T KOG2106|consen  466 -SHDNHIYIYRVSA  478 (626)
T ss_pred             -cCCCeEEEEEECC
Confidence             5678888888854

>PTZ00420 coronin; Provisional

Probab=97.47  E-value=0.11  Score=51.37  Aligned_cols=154  Identities=12%  Similarity=0.014  Sum_probs=89.9

Q ss_pred             CCCCCCceEEEeeC-CCeEEEEecCCEEEEEEcCCCee--E-------EeeccCCCcccCeEECCCCCEE-EEeCCCcEE
Q 018474           49 GCVNHPEDVSVVVS-KGALYTATRDGWVKYFILHNETL--V-------NWKHIDSQSLLGLTTTKDGGVI-LCDNEKGLL  117 (355)
Q Consensus        49 ~~~~~p~~i~~d~~-~g~l~~~~~~g~i~~~~~~~g~~--~-------~~~~~~~~p~~gl~~d~~g~L~-v~~~~~gl~  117 (355)
                      +.-....++++.|. +..|.+++.+|.|..++..++..  .       .+......+. .+++.+++..+ ++...++.+
T Consensus        72 gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~-sVaf~P~g~~iLaSgS~DgtI  150 (568)
T PTZ00420         72 GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS-IIDWNPMNYYIMCSSGFDSFV  150 (568)
T ss_pred             CCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE-EEEECCCCCeEEEEEeCCCeE
Confidence            33345678888865 45677888899999999754321  1       1111223466 88999888644 333344544


Q ss_pred             -EEc-CCC--eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecccccc-
Q 018474          118 -KVT-EEG--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFA-  192 (355)
Q Consensus       118 -~~~-~~g--~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~p-  192 (355)
                       .+| .++  ...+.. ...+.++.++++|.+.++...                 .+.+..||+.+++...-..+.... 
T Consensus       151 rIWDl~tg~~~~~i~~-~~~V~SlswspdG~lLat~s~-----------------D~~IrIwD~Rsg~~i~tl~gH~g~~  212 (568)
T PTZ00420        151 NIWDIENEKRAFQINM-PKKLSSLKWNIKGNLLSGTCV-----------------GKHMHIIDPRKQEIASSFHIHDGGK  212 (568)
T ss_pred             EEEECCCCcEEEEEec-CCcEEEEEECCCCCEEEEEec-----------------CCEEEEEECCCCcEEEEEecccCCc
Confidence             445 345  333322 246788999999988876433                 456888999877653222211111 


Q ss_pred             cc-----EEEeCCCCEEEEEeCCC---CeEEEEEeCC
Q 018474          193 NG-----IALSKNEDFVVVCESWK---FRCRRYWLKG  221 (355)
Q Consensus       193 ng-----i~~~~dg~~l~v~~~~~---~~i~~~~~~~  221 (355)
                      +.     ..+++|++.+..+...+   ..|..|+++.
T Consensus       213 ~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~  249 (568)
T PTZ00420        213 NTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKN  249 (568)
T ss_pred             eeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence            11     12357877665554433   2587888753

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.44  E-value=0.056  Score=47.65  Aligned_cols=102  Identities=16%  Similarity=0.189  Sum_probs=53.5

Q ss_pred             CCCcccCeEECCCC--CEEEEeCCC-cEEEEcCCC---eEEEcC-Cc-CCcccEEEccCCc-EEEEeCCCCCCCcccccc
Q 018474           92 DSQSLLGLTTTKDG--GVILCDNEK-GLLKVTEEG---VEAIVP-DA-SFTNDVIAASDGT-LYFTVASTKYTPTDFYKD  162 (355)
Q Consensus        92 ~~~p~~gl~~d~~g--~L~v~~~~~-gl~~~~~~g---~~~~~~-~~-~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~  162 (355)
                      ..+.+ +|++++.-  .+.++.--+ --+.+|.++   ..++.. .. .+--+=++++||. ||.|....          
T Consensus        67 paR~H-gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndf----------  135 (366)
T COG3490          67 PARGH-GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDF----------  135 (366)
T ss_pred             ccccC-CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCC----------
Confidence            34556 77776543  244443221 133445433   333322 22 3333447889995 66654331          


Q ss_pred             ccccCCCCeEEEEeCCCCeEEEe---eccccccccEEEeCCCCEEEEEe
Q 018474          163 MAEGKPYGQLRKYDPKLKETTVL---HEGFYFANGIALSKNEDFVVVCE  208 (355)
Q Consensus       163 ~~~~~~~g~l~~~dp~~~~~~~~---~~~~~~pngi~~~~dg~~l~v~~  208 (355)
                         ....|-|-.||-. ..+..+   ..-...|.-+.+.+||+.+.+++
T Consensus       136 ---d~~rGViGvYd~r-~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan  180 (366)
T COG3490         136 ---DPNRGVIGVYDAR-EGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN  180 (366)
T ss_pred             ---CCCCceEEEEecc-cccceecccccCCcCcceeEEecCCcEEEEeC
Confidence               1224445667654 333322   22234588899999999888876

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=97.44  E-value=0.077  Score=47.24  Aligned_cols=176  Identities=13%  Similarity=0.073  Sum_probs=97.8

Q ss_pred             CCceEEEeeCCCeEEEEecCCEEEEEEcCCCe-eEEeeccCCCcccCeEECCCC---CEEEEeCCCcEEEEcCCC----e
Q 018474           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNET-LVNWKHIDSQSLLGLTTTKDG---GVILCDNEKGLLKVTEEG----V  124 (355)
Q Consensus        53 ~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~-~~~~~~~~~~p~~gl~~d~~g---~L~v~~~~~gl~~~~~~g----~  124 (355)
                      .-.++|++  +..+..++.|-.|..||....+ ...+....+.++ .+.++..-   .|.-+. .+|.+.+...|    +
T Consensus        45 sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~Hagsit-aL~F~~~~S~shLlS~s-dDG~i~iw~~~~W~~~  120 (362)
T KOG0294|consen   45 SITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSIT-ALKFYPPLSKSHLLSGS-DDGHIIIWRVGSWELL  120 (362)
T ss_pred             ceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceE-EEEecCCcchhheeeec-CCCcEEEEEcCCeEEe
Confidence            34566664  5555556778899999985432 222233345666 77776443   565554 34544443323    3


Q ss_pred             EEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEE
Q 018474          125 EAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFV  204 (355)
Q Consensus       125 ~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l  204 (355)
                      +.+......++++++.|.|.|=++..+                 .+.+-.||.-+|+......--..+.-+.++|.|.+.
T Consensus       121 ~slK~H~~~Vt~lsiHPS~KLALsVg~-----------------D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F  183 (362)
T KOG0294|consen  121 KSLKAHKGQVTDLSIHPSGKLALSVGG-----------------DQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHF  183 (362)
T ss_pred             eeecccccccceeEecCCCceEEEEcC-----------------CceeeeehhhcCccceeeccCCcceeeEEcCCCCEE
Confidence            444433355999999999998887654                 223444454444433222222334558899999977


Q ss_pred             EEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474          205 VVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       205 ~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      ++..  +++|-.|.++...+-.   .+ ..+-.+-.+.++..+.+.||...
T Consensus       184 ~v~~--~~~i~i~q~d~A~v~~---~i-~~~~r~l~~~~l~~~~L~vG~d~  228 (362)
T KOG0294|consen  184 VVSG--RNKIDIYQLDNASVFR---EI-ENPKRILCATFLDGSELLVGGDN  228 (362)
T ss_pred             EEEe--ccEEEEEecccHhHhh---hh-hccccceeeeecCCceEEEecCC
Confidence            7764  4677777764322111   11 11212344556666667776543

>PLN00181 protein SPA1-RELATED; Provisional

Probab=97.43  E-value=0.21  Score=52.06  Aligned_cols=180  Identities=12%  Similarity=0.104  Sum_probs=99.9

Q ss_pred             CceEEEeeC-CCeEEEEecCCEEEEEEcCCCeeEE-eeccCCCcccCeEECC-CCCEEEEeCCCcEEEE-c-CCC--eEE
Q 018474           54 PEDVSVVVS-KGALYTATRDGWVKYFILHNETLVN-WKHIDSQSLLGLTTTK-DGGVILCDNEKGLLKV-T-EEG--VEA  126 (355)
Q Consensus        54 p~~i~~d~~-~g~l~~~~~~g~i~~~~~~~g~~~~-~~~~~~~p~~gl~~d~-~g~L~v~~~~~gl~~~-~-~~g--~~~  126 (355)
                      ..++++.+. +..+.++..+|.|..+|..+++... +........ ++++++ ++.++++...++.+++ + .++  +..
T Consensus       535 v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~-~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~  613 (793)
T PLN00181        535 LSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVW-SIDYSSADPTLLASGSDDGSVKLWSINQGVSIGT  613 (793)
T ss_pred             eeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEE-EEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEE
Confidence            356777643 4567777889999999987775433 222234566 888885 6777666555564544 4 345  443


Q ss_pred             EcCCcCCcccEEEc-cCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeE--EEeeccccccccEEEeCCCCE
Q 018474          127 IVPDASFTNDVIAA-SDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKET--TVLHEGFYFANGIALSKNEDF  203 (355)
Q Consensus       127 ~~~~~~~~~~l~~d-~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~--~~~~~~~~~pngi~~~~dg~~  203 (355)
                      +... ..+..+.+. ++|.+.++.+.                 .+.+..||..+.+.  ..+.........+++. ++..
T Consensus       614 ~~~~-~~v~~v~~~~~~g~~latgs~-----------------dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~  674 (793)
T PLN00181        614 IKTK-ANICCVQFPSESGRSLAFGSA-----------------DHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSST  674 (793)
T ss_pred             EecC-CCeEEEEEeCCCCCEEEEEeC-----------------CCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCE
Confidence            3322 345556664 45766655433                 56788888765432  2222111223456675 5664


Q ss_pred             EEEEeCCCCeEEEEEeCCCC----CcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474          204 VVVCESWKFRCRRYWLKGDR----AGILDAFIENLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       204 l~v~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                       +++....+.|..|++....    ......+. ........+.++.+|.+.++...
T Consensus       675 -lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~-gh~~~i~~v~~s~~~~~lasgs~  728 (793)
T PLN00181        675 -LVSSSTDNTLKLWDLSMSISGINETPLHSFM-GHTNVKNFVGLSVSDGYIATGSE  728 (793)
T ss_pred             -EEEEECCCEEEEEeCCCCccccCCcceEEEc-CCCCCeeEEEEcCCCCEEEEEeC
Confidence             4555566778888874311    11122222 22222344667888876665543

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=97.42  E-value=0.014  Score=57.91  Aligned_cols=148  Identities=12%  Similarity=0.142  Sum_probs=97.3

Q ss_pred             CCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeE-Eee---ccCCCcccCeEECCCCCEEEEeCCCcEEEEcC--CC--e
Q 018474           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETLV-NWK---HIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE--EG--V  124 (355)
Q Consensus        53 ~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~-~~~---~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~--~g--~  124 (355)
                      ...+++++.-|+..++|...|.|-+++..+|... .|.   ...+... |++.|.-+++.|+....|+..+..  ++  +
T Consensus       450 ~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~-gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~  528 (910)
T KOG1539|consen  450 NATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVT-GLAVDGTNRLLVSAGADGILKFWDFKKKVLK  528 (910)
T ss_pred             ceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCcee-EEEecCCCceEEEccCcceEEEEecCCccee
Confidence            4567777767888899999999999999887432 331   1123455 999999999999887788877752  22  1


Q ss_pred             EEEc--CCc---------------------------------------CCcccEEEccCCcEEEEeCCCCCCCccccccc
Q 018474          125 EAIV--PDA---------------------------------------SFTNDVIAASDGTLYFTVASTKYTPTDFYKDM  163 (355)
Q Consensus       125 ~~~~--~~~---------------------------------------~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~  163 (355)
                      ..+.  ...                                       +.++++++++||+=.++-+.            
T Consensus       529 ~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasm------------  596 (910)
T KOG1539|consen  529 KSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASM------------  596 (910)
T ss_pred             eeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeec------------
Confidence            1110  000                                       56777777777753333221            


Q ss_pred             cccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEE
Q 018474          164 AEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYW  218 (355)
Q Consensus       164 ~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~  218 (355)
                           .+.+..||.-++..--...--.-+-.+.++|.|++|-.+..+.++|+.|.
T Consensus       597 -----D~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  597 -----DSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWS  646 (910)
T ss_pred             -----CCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence                 35677888766654322111123456889999999988888888888776

>PRK13684 Ycf48-like protein; Provisional

Probab=97.36  E-value=0.12  Score=47.83  Aligned_cols=218  Identities=11%  Similarity=0.053  Sum_probs=105.9

Q ss_pred             EEEEecCCEEEEEEcCCCeeEEeec---cCCCcccCeEECCCCCEEEEeCCCcEEEEcCCC--eEEEcCC-cCCcccEEE
Q 018474           66 LYTATRDGWVKYFILHNETLVNWKH---IDSQSLLGLTTTKDGGVILCDNEKGLLKVTEEG--VEAIVPD-ASFTNDVIA  139 (355)
Q Consensus        66 l~~~~~~g~i~~~~~~~g~~~~~~~---~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~~g--~~~~~~~-~~~~~~l~~  139 (355)
                      .|+....|.|++-.-....++.+..   ..+.+. .+....++.+|++...+.+++-...|  -+.+... ....+++.+
T Consensus       102 ~~~~G~~g~i~~S~DgG~tW~~~~~~~~~~~~~~-~i~~~~~~~~~~~g~~G~i~~S~DgG~tW~~~~~~~~g~~~~i~~  180 (334)
T PRK13684        102 GWIVGQPSLLLHTTDGGKNWTRIPLSEKLPGSPY-LITALGPGTAEMATNVGAIYRTTDGGKNWEALVEDAAGVVRNLRR  180 (334)
T ss_pred             EEEeCCCceEEEECCCCCCCeEccCCcCCCCCce-EEEEECCCcceeeeccceEEEECCCCCCceeCcCCCcceEEEEEE
Confidence            4444445555553321224444321   112344 44443445666665444566655444  3333222 245677888


Q ss_pred             ccCCcEEEEeCCCCCCCccccccccccCCCCeEEEE-eCCCCeEEEeecc-ccccccEEEeCCCCEEEEEeCCCCeEEEE
Q 018474          140 ASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKY-DPKLKETTVLHEG-FYFANGIALSKNEDFVVVCESWKFRCRRY  217 (355)
Q Consensus       140 d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~-dp~~~~~~~~~~~-~~~pngi~~~~dg~~l~v~~~~~~~i~~~  217 (355)
                      +++|.+++...                  .|.+++- +.....++.+... ....+++++.++++ +|+...  ++..++
T Consensus       181 ~~~g~~v~~g~------------------~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~-~~~vg~--~G~~~~  239 (334)
T PRK13684        181 SPDGKYVAVSS------------------RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGN-LWMLAR--GGQIRF  239 (334)
T ss_pred             CCCCeEEEEeC------------------CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCC-EEEEec--CCEEEE
Confidence            88776655432                  2445544 3322345544322 23456788888887 555443  344444


Q ss_pred             E-eCCCCCcceeEecccCCC-CcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEE
Q 018474          218 W-LKGDRAGILDAFIENLPG-GPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARV  295 (355)
Q Consensus       218 ~-~~~~~~~~~~~~~~~~~g-~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  295 (355)
                      . .++...-+.......... ....+.+.+++++|++...                                     +.+
T Consensus       240 ~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~-------------------------------------G~v  282 (334)
T PRK13684        240 NDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGN-------------------------------------GTL  282 (334)
T ss_pred             ccCCCCCccccccCCccccccceeeEEEcCCCCEEEEcCC-------------------------------------CeE
Confidence            2 333221111100000000 1233566677889987644                                     345


Q ss_pred             EEEeCCCCeEEEEEECCCCCcccceeEEE-EeCCEEEEeecCCCeEEEeeC
Q 018474          296 VKVDGNDGKIIRDFNDPDATYISFVTSAA-EFDGNLYLASLQSNFIGILPL  345 (355)
Q Consensus       296 ~~~~~~~g~~~~~~~~~~g~~~~~~~~~~-~~~g~L~v~~~~~~~i~~~~~  345 (355)
                      ++-.. .|+..+....+.+.. .....+. .++++.|+... ...|.++.-
T Consensus       283 ~~S~d-~G~tW~~~~~~~~~~-~~~~~~~~~~~~~~~~~G~-~G~il~~~~  330 (334)
T PRK13684        283 LVSKD-GGKTWEKDPVGEEVP-SNFYKIVFLDPEKGFVLGQ-RGVLLRYVG  330 (334)
T ss_pred             EEeCC-CCCCCeECCcCCCCC-cceEEEEEeCCCceEEECC-CceEEEecC
Confidence            54333 677666554333432 2343344 45688888776 556666543

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=97.36  E-value=0.00035  Score=39.11  Aligned_cols=27  Identities=19%  Similarity=0.496  Sum_probs=24.1

Q ss_pred             cccccEEEeCCCCEEEEEeCCCCeEEEE
Q 018474          190 YFANGIALSKNEDFVVVCESWKFRCRRY  217 (355)
Q Consensus       190 ~~pngi~~~~dg~~l~v~~~~~~~i~~~  217 (355)
                      ..|.|++++++|+ +|++|+..++|++|
T Consensus         2 ~~P~gvav~~~g~-i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    2 NYPHGVAVDSDGN-IYVADSGNHRVQVF   28 (28)
T ss_dssp             SSEEEEEEETTSE-EEEEECCCTEEEEE
T ss_pred             cCCcEEEEeCCCC-EEEEECCCCEEEEC
Confidence            4699999998886 99999999999876

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=97.34  E-value=0.0014  Score=47.75  Aligned_cols=64  Identities=14%  Similarity=0.150  Sum_probs=45.9

Q ss_pred             eEEEeeCCCeEEEEe------------------cCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCC-Cc
Q 018474           56 DVSVVVSKGALYTAT------------------RDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNE-KG  115 (355)
Q Consensus        56 ~i~~d~~~g~l~~~~------------------~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~-~g  115 (355)
                      ++.+++++|.+|...                  .+|+++++||.+++.+.+......|+ |+++++++. ++|++.. ..
T Consensus         2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpN-GVals~d~~~vlv~Et~~~R   80 (89)
T PF03088_consen    2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPN-GVALSPDESFVLVAETGRYR   80 (89)
T ss_dssp             EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEE-EEEE-TTSSEEEEEEGGGTE
T ss_pred             ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccC-eEEEcCCCCEEEEEeccCce
Confidence            567774448888764                  36899999999999988877777899 999999987 7888765 45


Q ss_pred             EEEEc
Q 018474          116 LLKVT  120 (355)
Q Consensus       116 l~~~~  120 (355)
                      |.++.
T Consensus        81 i~ryw   85 (89)
T PF03088_consen   81 ILRYW   85 (89)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            66665

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PRK13684 Ycf48-like protein; Provisional

Probab=97.33  E-value=0.13  Score=47.55  Aligned_cols=179  Identities=13%  Similarity=0.102  Sum_probs=86.1

Q ss_pred             CCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeecc----CCCcccCeEECCCCCEEEEeCCCcEEEEcCCC--eE
Q 018474           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI----DSQSLLGLTTTKDGGVILCDNEKGLLKVTEEG--VE  125 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~----~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~~g--~~  125 (355)
                      ....+|++. +.+..|+....|.|++=.-....++.....    ..+.. .++++ .+..|++...+.+++=...|  -+
T Consensus        46 ~~l~~v~F~-d~~~g~avG~~G~il~T~DgG~tW~~~~~~~~~~~~~l~-~v~~~-~~~~~~~G~~g~i~~S~DgG~tW~  122 (334)
T PRK13684         46 ANLLDIAFT-DPNHGWLVGSNRTLLETNDGGETWEERSLDLPEENFRLI-SISFK-GDEGWIVGQPSLLLHTTDGGKNWT  122 (334)
T ss_pred             CceEEEEEe-CCCcEEEEECCCEEEEEcCCCCCceECccCCccccccee-eeEEc-CCcEEEeCCCceEEEECCCCCCCe
Confidence            345667776 555556544567676654322345554221    11244 66665 34567765444455544434  34


Q ss_pred             EEcCC---cCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccc-cccccEEEeCCC
Q 018474          126 AIVPD---ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGF-YFANGIALSKNE  201 (355)
Q Consensus       126 ~~~~~---~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~-~~pngi~~~~dg  201 (355)
                      .+...   ...+..+....++.+|+...                  .|.+++-+-....++.+..+. ...+++.+++++
T Consensus       123 ~~~~~~~~~~~~~~i~~~~~~~~~~~g~------------------~G~i~~S~DgG~tW~~~~~~~~g~~~~i~~~~~g  184 (334)
T PRK13684        123 RIPLSEKLPGSPYLITALGPGTAEMATN------------------VGAIYRTTDGGKNWEALVEDAAGVVRNLRRSPDG  184 (334)
T ss_pred             EccCCcCCCCCceEEEEECCCcceeeec------------------cceEEEECCCCCCceeCcCCCcceEEEEEECCCC
Confidence            33211   12333343333344444321                  345666554455666554332 234567788887


Q ss_pred             CEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474          202 DFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       202 ~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      ..+ +.. ..+.+++-.-++..  +.+...........++.+.++|++|+....
T Consensus       185 ~~v-~~g-~~G~i~~s~~~gg~--tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~  234 (334)
T PRK13684        185 KYV-AVS-SRGNFYSTWEPGQT--AWTPHQRNSSRRLQSMGFQPDGNLWMLARG  234 (334)
T ss_pred             eEE-EEe-CCceEEEEcCCCCC--eEEEeeCCCcccceeeeEcCCCCEEEEecC
Confidence            533 332 34555543222211  122221111122455677778888887643

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=97.30  E-value=0.15  Score=48.31  Aligned_cols=142  Identities=11%  Similarity=0.099  Sum_probs=77.0

Q ss_pred             CceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeec-cCCCcccCeEECCCCCEEEEeCCCcEEEEcC--CC--eEEEc
Q 018474           54 PEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH-IDSQSLLGLTTTKDGGVILCDNEKGLLKVTE--EG--VEAIV  128 (355)
Q Consensus        54 p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~-~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~--~g--~~~~~  128 (355)
                      -.++++. .+|....+..+|.|..+++.+.++.+-.. ..+... ++..-++|.|.-+...+-+...+.  ..  -..++
T Consensus       249 Vl~v~F~-engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~-~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elP  326 (626)
T KOG2106|consen  249 VLCVTFL-ENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVF-SLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELP  326 (626)
T ss_pred             EEEEEEc-CCCCEEeecCCceEEEEeCCCceEEeEeeecCCceE-EEEEecCccEeecCccceEEeccccccccccccCc
Confidence            3467777 67778888889999999886665543222 123456 677778888876443333444442  11  11233


Q ss_pred             CCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCC-eEEEeeccccccccEEEeCCCCEEEEE
Q 018474          129 PDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLK-ETTVLHEGFYFANGIALSKNEDFVVVC  207 (355)
Q Consensus       129 ~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~-~~~~~~~~~~~pngi~~~~dg~~l~v~  207 (355)
                      .....++.++.... .||++++.                  +.++.=+.+++ ...++..+ ..--|++.+|+.+ .|++
T Consensus       327 e~~G~iRtv~e~~~-di~vGTtr------------------N~iL~Gt~~~~f~~~v~gh~-delwgla~hps~~-q~~T  385 (626)
T KOG2106|consen  327 EQFGPIRTVAEGKG-DILVGTTR------------------NFILQGTLENGFTLTVQGHG-DELWGLATHPSKN-QLLT  385 (626)
T ss_pred             hhcCCeeEEecCCC-cEEEeecc------------------ceEEEeeecCCceEEEEecc-cceeeEEcCCChh-heee
Confidence            33355666655433 38887654                  12222111122 11222111 1345788999877 6666


Q ss_pred             eCCCCeEEEEE
Q 018474          208 ESWKFRCRRYW  218 (355)
Q Consensus       208 ~~~~~~i~~~~  218 (355)
                      ....+.+..++
T Consensus       386 ~gqdk~v~lW~  396 (626)
T KOG2106|consen  386 CGQDKHVRLWN  396 (626)
T ss_pred             ccCcceEEEcc
Confidence            55554444444

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=97.25  E-value=0.023  Score=50.65  Aligned_cols=152  Identities=13%  Similarity=0.143  Sum_probs=89.7

Q ss_pred             CCCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEe---------eccCCCcccCeEECCCCCEEEEeCCCcEEE
Q 018474           48 EGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNW---------KHIDSQSLLGLTTTKDGGVILCDNEKGLLK  118 (355)
Q Consensus        48 ~~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~---------~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~  118 (355)
                      -|.-..+|+-.+.|++..|..++.+|-|-.++-.+|+.++=         ........ +|.+.+|..+......+|-++
T Consensus       210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVl-ci~FSRDsEMlAsGsqDGkIK  288 (508)
T KOG0275|consen  210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVL-CISFSRDSEMLASGSQDGKIK  288 (508)
T ss_pred             cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceE-EEeecccHHHhhccCcCCcEE
Confidence            35457899999998888888889999999998888876421         11112244 666766666665555556444


Q ss_pred             Ec--CCC--eEEEcC-CcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEE-eCCCCe-EEEeeccccc
Q 018474          119 VT--EEG--VEAIVP-DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKY-DPKLKE-TTVLHEGFYF  191 (355)
Q Consensus       119 ~~--~~g--~~~~~~-~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~-dp~~~~-~~~~~~~~~~  191 (355)
                      +.  .+|  ++.+.. ....+..+.++.|+.-.++.+.                  ....|+ -.++|+ ++.+...-++
T Consensus       289 vWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sf------------------D~tvRiHGlKSGK~LKEfrGHsSy  350 (508)
T KOG0275|consen  289 VWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASF------------------DQTVRIHGLKSGKCLKEFRGHSSY  350 (508)
T ss_pred             EEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccc------------------cceEEEeccccchhHHHhcCcccc
Confidence            44  355  444321 1256777778777633332211                  112222 122332 2233333456


Q ss_pred             cccEEEeCCCCEEEEEeCCCCeEEEEEe
Q 018474          192 ANGIALSKNEDFVVVCESWKFRCRRYWL  219 (355)
Q Consensus       192 pngi~~~~dg~~l~v~~~~~~~i~~~~~  219 (355)
                      -|-..+++||+.++-+ +..+.|.+|+.
T Consensus       351 vn~a~ft~dG~~iisa-SsDgtvkvW~~  377 (508)
T KOG0275|consen  351 VNEATFTDDGHHIISA-SSDGTVKVWHG  377 (508)
T ss_pred             ccceEEcCCCCeEEEe-cCCccEEEecC
Confidence            7888999999865554 45667777765

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=97.24  E-value=0.17  Score=47.01  Aligned_cols=169  Identities=12%  Similarity=0.117  Sum_probs=83.5

Q ss_pred             CeEEEEecCCEEEEEEcCCCeeEEeeccC-CCcccCeEECCCCCEEEEeCCCcEEEEc--CCC--eEEEcCCcCCcccEE
Q 018474           64 GALYTATRDGWVKYFILHNETLVNWKHID-SQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG--VEAIVPDASFTNDVI  138 (355)
Q Consensus        64 g~l~~~~~~g~i~~~~~~~g~~~~~~~~~-~~p~~gl~~d~~g~L~v~~~~~gl~~~~--~~g--~~~~~~~~~~~~~l~  138 (355)
                      ..+.++..+..+..+|...++.....+.. -.+. .+.+.++-...+.......+++.  +..  .........-++++.
T Consensus       232 ~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~-~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls  310 (506)
T KOG0289|consen  232 SKILTGGEDKTAVLFDKPSNQILATLKGHTKKIT-SVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLS  310 (506)
T ss_pred             CcceecCCCCceEEEecchhhhhhhccCcceEEE-EEEeccchhheeecCCcceEEeeccccccCccccccccccceeee
Confidence            55666666766777776555443222111 1123 44444444443333344445544  221  111111124567777


Q ss_pred             EccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCe-EEEeecc--ccccccEEEeCCCCEEEEEeCCCCeEE
Q 018474          139 AASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE-TTVLHEG--FYFANGIALSKNEDFVVVCESWKFRCR  215 (355)
Q Consensus       139 ~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~-~~~~~~~--~~~pngi~~~~dg~~l~v~~~~~~~i~  215 (355)
                      ..+.|..+++.+..                 +.....|-.++. +.++...  ...-...+++|||. ++.+.+..+.|.
T Consensus       311 ~h~tgeYllsAs~d-----------------~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL-ifgtgt~d~~vk  372 (506)
T KOG0289|consen  311 LHPTGEYLLSASND-----------------GTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL-IFGTGTPDGVVK  372 (506)
T ss_pred             eccCCcEEEEecCC-----------------ceEEEEEccCCcEEEEEeeccccceeEEeeEcCCce-EEeccCCCceEE
Confidence            77887655544331                 111112222232 2222211  01123568999996 888887777777


Q ss_pred             EEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474          216 RYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      .|+++...  ....|. ...+-...+.+..+| +|.++..
T Consensus       373 iwdlks~~--~~a~Fp-ght~~vk~i~FsENG-Y~Lat~a  408 (506)
T KOG0289|consen  373 IWDLKSQT--NVAKFP-GHTGPVKAISFSENG-YWLATAA  408 (506)
T ss_pred             EEEcCCcc--ccccCC-CCCCceeEEEeccCc-eEEEEEe
Confidence            77774322  222333 233334668888777 7777754

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=97.23  E-value=0.06  Score=45.69  Aligned_cols=131  Identities=11%  Similarity=0.116  Sum_probs=77.6

Q ss_pred             EEEEEEcCCCeeEEeec-cCCCcccCeEECCCCCEE-EEeC--CCcEEEEcCCC--eEEEcCCcCCcccEEEccCCcEEE
Q 018474           74 WVKYFILHNETLVNWKH-IDSQSLLGLTTTKDGGVI-LCDN--EKGLLKVTEEG--VEAIVPDASFTNDVIAASDGTLYF  147 (355)
Q Consensus        74 ~i~~~~~~~g~~~~~~~-~~~~p~~gl~~d~~g~L~-v~~~--~~gl~~~~~~g--~~~~~~~~~~~~~l~~d~dG~ly~  147 (355)
                      .|++++..+.....+.. ..+.+. .+++.++|+-+ +...  ...+..++..+  +..+..  ...|.+..+|+|++.+
T Consensus        40 ~l~~~~~~~~~~~~i~l~~~~~I~-~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~~--~~~n~i~wsP~G~~l~  116 (194)
T PF08662_consen   40 ELFYLNEKNIPVESIELKKEGPIH-DVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFGT--QPRNTISWSPDGRFLV  116 (194)
T ss_pred             EEEEEecCCCccceeeccCCCceE-EEEECcCCCEEEEEEccCCcccEEEcCcccEeEeecC--CCceEEEECCCCCEEE
Confidence            56677665554444432 223477 89999998743 4322  23355555434  444433  4678899999998766


Q ss_pred             EeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCC-----CCeEEEEEeCCC
Q 018474          148 TVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESW-----KFRCRRYWLKGD  222 (355)
Q Consensus       148 ~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~-----~~~i~~~~~~~~  222 (355)
                      ....              +...|.+..||.++.+..... .......++++|||+++..+.+.     .+++..|+..|.
T Consensus       117 ~~g~--------------~n~~G~l~~wd~~~~~~i~~~-~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~  181 (194)
T PF08662_consen  117 LAGF--------------GNLNGDLEFWDVRKKKKISTF-EHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR  181 (194)
T ss_pred             EEEc--------------cCCCcEEEEEECCCCEEeecc-ccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence            5332              122467888997654432211 22345788999999987776653     445555665553

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.22  E-value=0.18  Score=49.76  Aligned_cols=107  Identities=16%  Similarity=0.171  Sum_probs=62.7

Q ss_pred             CCeEEEEecCCEEEEEEcCCCeeEE-eeccC---CC--------cccCeEECCCCCEEEEeCCCcEEEEc-CCC-eEE-E
Q 018474           63 KGALYTATRDGWVKYFILHNETLVN-WKHID---SQ--------SLLGLTTTKDGGVILCDNEKGLLKVT-EEG-VEA-I  127 (355)
Q Consensus        63 ~g~l~~~~~~g~i~~~~~~~g~~~~-~~~~~---~~--------p~~gl~~d~~g~L~v~~~~~gl~~~~-~~g-~~~-~  127 (355)
                      ++.+|+++.++.|+.+|.++|+..- +....   ..        .. ++++. ++++|+++..+.++.+| ++| +.- .
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~r-g~av~-~~~v~v~t~dg~l~ALDa~TGk~~W~~  146 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNR-GVALY-DGKVFFGTLDARLVALDAKTGKVVWSK  146 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccc-cceEE-CCEEEEEcCCCEEEEEECCCCCEEeec
Confidence            7899999988999999999997431 11100   00        12 34443 57899998777899999 478 321 1


Q ss_pred             c-CCcC---Cc-ccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEE
Q 018474          128 V-PDAS---FT-NDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV  184 (355)
Q Consensus       128 ~-~~~~---~~-~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~  184 (355)
                      . ....   .+ ..-++ .+|.||++.+...+            ...|.++.+|.++|+...
T Consensus       147 ~~~~~~~~~~~tssP~v-~~g~Vivg~~~~~~------------~~~G~v~AlD~~TG~~lW  195 (527)
T TIGR03075       147 KNGDYKAGYTITAAPLV-VKGKVITGISGGEF------------GVRGYVTAYDAKTGKLVW  195 (527)
T ss_pred             ccccccccccccCCcEE-ECCEEEEeeccccc------------CCCcEEEEEECCCCceeE
Confidence            1 1100   01 11111 25678887543111            124677888887776543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=97.18  E-value=0.043  Score=51.14  Aligned_cols=193  Identities=12%  Similarity=0.127  Sum_probs=108.8

Q ss_pred             CcccCeEECCCCCE-EEEeCCC--cEEEEc-CCC--eEEEcCCcCCcccEEEccCCc-EEEEeCCCCCCCcccccccccc
Q 018474           94 QSLLGLTTTKDGGV-ILCDNEK--GLLKVT-EEG--VEAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEG  166 (355)
Q Consensus        94 ~p~~gl~~d~~g~L-~v~~~~~--gl~~~~-~~g--~~~~~~~~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~  166 (355)
                      .+. ++.+.+.-.| .+|...+  .||.+| +..  ++.+.-...-+....+.++|. ..++.+.               
T Consensus       215 ~I~-sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r---------------  278 (514)
T KOG2055|consen  215 GIT-SVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGR---------------  278 (514)
T ss_pred             Cce-EEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEeccc---------------
Confidence            355 7778776654 4454332  255555 322  333222212345567888986 5555443               


Q ss_pred             CCCCeEEEEeCCCCeEEEeeccccc----cccEEEeCCCCEEEEEeCCCCeEEEEEeCCC-CCcceeEecccCCCCcCce
Q 018474          167 KPYGQLRKYDPKLKETTVLHEGFYF----ANGIALSKNEDFVVVCESWKFRCRRYWLKGD-RAGILDAFIENLPGGPDNI  241 (355)
Q Consensus       167 ~~~g~l~~~dp~~~~~~~~~~~~~~----pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~g~p~~i  241 (355)
                        .-.+|.||..+.+++.+......    -.-..+++|++++.+.. ..+.|....-... .++.+     ..+|...++
T Consensus       279 --rky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G-~~G~I~lLhakT~eli~s~-----KieG~v~~~  350 (514)
T KOG2055|consen  279 --RKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAG-NNGHIHLLHAKTKELITSF-----KIEGVVSDF  350 (514)
T ss_pred             --ceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcc-cCceEEeehhhhhhhhhee-----eeccEEeeE
Confidence              23588999988877655432211    23356889999766654 3456666553221 12222     234556778


Q ss_pred             EECCCCC-EEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccce
Q 018474          242 NLAPDGS-FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFV  320 (355)
Q Consensus       242 ~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~  320 (355)
                      .++++|+ ||++...                                     |.|+.+|-.....+..|.+..+.   ..
T Consensus       351 ~fsSdsk~l~~~~~~-------------------------------------GeV~v~nl~~~~~~~rf~D~G~v---~g  390 (514)
T KOG2055|consen  351 TFSSDSKELLASGGT-------------------------------------GEVYVWNLRQNSCLHRFVDDGSV---HG  390 (514)
T ss_pred             EEecCCcEEEEEcCC-------------------------------------ceEEEEecCCcceEEEEeecCcc---ce
Confidence            8999996 5555433                                     46888886344667778774442   34


Q ss_pred             eEEEEe-CCEEEEeecCCCeEEEeeCCCCCC
Q 018474          321 TSAAEF-DGNLYLASLQSNFIGILPLDGPEP  350 (355)
Q Consensus       321 ~~~~~~-~g~L~v~~~~~~~i~~~~~~~~~~  350 (355)
                      +.++.. ++.++..+...+-|=.|+..+.-+
T Consensus       391 ts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~  421 (514)
T KOG2055|consen  391 TSLCISLNGSYLATGSDSGIVNIYDGNSCFA  421 (514)
T ss_pred             eeeeecCCCceEEeccCcceEEEeccchhhc
Confidence            445543 455444455577777777655443

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=97.17  E-value=0.088  Score=48.10  Aligned_cols=200  Identities=14%  Similarity=0.097  Sum_probs=110.2

Q ss_pred             CCCCCCceEEEee-----CCCeEEEEecCCEEEEEEcCCCeeEEeeccC-CCcccCeEECCCCCEEEEeCCCcEEEE-c-
Q 018474           49 GCVNHPEDVSVVV-----SKGALYTATRDGWVKYFILHNETLVNWKHID-SQSLLGLTTTKDGGVILCDNEKGLLKV-T-  120 (355)
Q Consensus        49 ~~~~~p~~i~~d~-----~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~-~~p~~gl~~d~~g~L~v~~~~~gl~~~-~-  120 (355)
                      |.-+.-.++++.|     ..+.|-.++.||.+..+|...++.......- .... ++.+..+|-||-+... +.+++ . 
T Consensus       198 gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VT-CvrwGG~gliySgS~D-rtIkvw~a  275 (480)
T KOG0271|consen  198 GHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVT-CVRWGGEGLIYSGSQD-RTIKVWRA  275 (480)
T ss_pred             CcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceE-EEEEcCCceEEecCCC-ceEEEEEc
Confidence            3345556666664     2344555667898988888666554433221 2344 7888778888877644 44444 3 


Q ss_pred             CCC--eEEEcCCcCCcccEEEccCCcEEEE--eCCCCC---------------C--CccccccccccCCCCeEEEEeCCC
Q 018474          121 EEG--VEAIVPDASFTNDVIAASDGTLYFT--VASTKY---------------T--PTDFYKDMAEGKPYGQLRKYDPKL  179 (355)
Q Consensus       121 ~~g--~~~~~~~~~~~~~l~~d~dG~ly~~--d~~~~~---------------~--~~~~~~~~~~~~~~g~l~~~dp~~  179 (355)
                      .+|  .+.+.....++|.++.+.|=-|-.+  +...++               .  +++....+..+.....++.|+|..
T Consensus       276 ~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~  355 (480)
T KOG0271|consen  276 LDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFK  355 (480)
T ss_pred             cchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccc
Confidence            366  5555555578888877643111100  000000               0  011112344555567899999853


Q ss_pred             Ce--EEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCccee-EecccCCCCcCceEECCCCCEEEEeec
Q 018474          180 KE--TTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILD-AFIENLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       180 ~~--~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      .+  ++.+......-|-+.|+||++ .+.+.+..+.|..++-+.   +++- .|- +.-+.-.-++..+|.+|.|+...
T Consensus       356 ~kkpi~rmtgHq~lVn~V~fSPd~r-~IASaSFDkSVkLW~g~t---Gk~lasfR-GHv~~VYqvawsaDsRLlVS~Sk  429 (480)
T KOG0271|consen  356 SKKPITRMTGHQALVNHVSFSPDGR-YIASASFDKSVKLWDGRT---GKFLASFR-GHVAAVYQVAWSADSRLLVSGSK  429 (480)
T ss_pred             cccchhhhhchhhheeeEEECCCcc-EEEEeecccceeeeeCCC---cchhhhhh-hccceeEEEEeccCccEEEEcCC
Confidence            22  122222344578899999997 555566677777666432   2221 111 11112234667888899998866

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.16  E-value=0.17  Score=45.56  Aligned_cols=248  Identities=18%  Similarity=0.192  Sum_probs=130.4

Q ss_pred             CceEEEeeCCCe-EEEEec-CCEEEEEEcCCCeeEEeecc-CC-CcccCe-EECCCCC-EEEEeC----CCcEE-EEcCC
Q 018474           54 PEDVSVVVSKGA-LYTATR-DGWVKYFILHNETLVNWKHI-DS-QSLLGL-TTTKDGG-VILCDN----EKGLL-KVTEE  122 (355)
Q Consensus        54 p~~i~~d~~~g~-l~~~~~-~g~i~~~~~~~g~~~~~~~~-~~-~p~~gl-~~d~~g~-L~v~~~----~~gl~-~~~~~  122 (355)
                      ..+++.+|.... +.++-. .-..+++|+.+|+....... .+ +-+ |- ++++||+ ||.++.    +.|++ .++..
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFy-GHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~   85 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFY-GHGVFSPDGRLLYTTENDYETGRGVIGVYDAA   85 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEe-cCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence            445555542222 223322 33567788877776544322 22 223 32 3567887 555543    24544 44543


Q ss_pred             -C---eEEEcCCcCCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeec---cc--ccc
Q 018474          123 -G---VEAIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE---GF--YFA  192 (355)
Q Consensus       123 -g---~~~~~~~~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~---~~--~~p  192 (355)
                       +   +..+....-.|.++...+|| +|.|++.+-....+.--..+...+..-.|...|..+|++.....   ..  ..-
T Consensus        86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSi  165 (305)
T PF07433_consen   86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSI  165 (305)
T ss_pred             CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccce
Confidence             4   33344434689999999999 89998865221111101112222334468888888887643311   11  123


Q ss_pred             ccEEEeCCCCEEEEEeCCCCe-------EEEEEeCCCCCcceeEec------ccCCCCcCceEECCCCCEEEEeecCCch
Q 018474          193 NGIALSKNEDFVVVCESWKFR-------CRRYWLKGDRAGILDAFI------ENLPGGPDNINLAPDGSFWIGLIKMNQT  259 (355)
Q Consensus       193 ngi~~~~dg~~l~v~~~~~~~-------i~~~~~~~~~~~~~~~~~------~~~~g~p~~i~~d~~G~lwv~~~~~~~~  259 (355)
                      .-++++.||. ++++.-..+.       |..+.. +.   ..+.+.      ..+.+|.-.++++.+|+++..+..-   
T Consensus       166 RHLa~~~~G~-V~~a~Q~qg~~~~~~PLva~~~~-g~---~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPr---  237 (305)
T PF07433_consen  166 RHLAVDGDGT-VAFAMQYQGDPGDAPPLVALHRR-GG---ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPR---  237 (305)
T ss_pred             eeEEecCCCc-EEEEEecCCCCCccCCeEEEEcC-CC---cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCC---
Confidence            4578888886 5554422111       111111 11   111111      1233566678999999877666431   


Q ss_pred             hhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeCCEEEEeecCCCe
Q 018474          260 GVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNF  339 (355)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~  339 (355)
                                                      .+++..+|.++|+.+....-++.      +++...++. |+.+.....
T Consensus       238 --------------------------------Gg~~~~~d~~tg~~~~~~~l~D~------cGva~~~~~-f~~ssG~G~  278 (305)
T PF07433_consen  238 --------------------------------GGRVAVWDAATGRLLGSVPLPDA------CGVAPTDDG-FLVSSGQGQ  278 (305)
T ss_pred             --------------------------------CCEEEEEECCCCCEeeccccCce------eeeeecCCc-eEEeCCCcc
Confidence                                            25788888768998887766663      334444333 566666666


Q ss_pred             EEEeeCCCCC
Q 018474          340 IGILPLDGPE  349 (355)
Q Consensus       340 i~~~~~~~~~  349 (355)
                      +..+......
T Consensus       279 ~~~~~~~~~~  288 (305)
T PF07433_consen  279 LIRLSPDGPQ  288 (305)
T ss_pred             EEEccCcccc
Confidence            6666554443

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=97.13  E-value=0.15  Score=44.13  Aligned_cols=170  Identities=16%  Similarity=0.126  Sum_probs=100.6

Q ss_pred             EEEEecCCEEEEEEcCCCeeE-EeeccCCCcccCeEECCCCCEEEEeCCCcEEEEc-CCC----eEEEcCCcCCcccEEE
Q 018474           66 LYTATRDGWVKYFILHNETLV-NWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT-EEG----VEAIVPDASFTNDVIA  139 (355)
Q Consensus        66 l~~~~~~g~i~~~~~~~g~~~-~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~-~~g----~~~~~~~~~~~~~l~~  139 (355)
                      |..+.+|..|..+...+|.-. .+.+.....+ .+.+.++++...+...+.+-.|| ..+    +-.+....+.+..+.+
T Consensus        13 LvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVN-rLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF   91 (311)
T KOG0315|consen   13 LVSAGYDHTIRFWQALTGICSRTIQHPDSQVN-RLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGF   91 (311)
T ss_pred             EEeccCcceeeeeehhcCeEEEEEecCcccee-eEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEE
Confidence            334567888888888888644 3334455677 88888888877666565555555 222    3333333356777788


Q ss_pred             ccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEe
Q 018474          140 ASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWL  219 (355)
Q Consensus       140 d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~  219 (355)
                      -.+|+--.+.+.                 .|.+-.||...-..........--|.+.++|++..|++++ ..+.|+.+|+
T Consensus        92 ~~dgrWMyTgse-----------------Dgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~d-qsg~irvWDl  153 (311)
T KOG0315|consen   92 QCDGRWMYTGSE-----------------DGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGD-QSGNIRVWDL  153 (311)
T ss_pred             eecCeEEEecCC-----------------CceEEEEeccCcccchhccCCCCcceEEecCCcceEEeec-CCCcEEEEEc
Confidence            888864444332                 4556666665433222222224458899999988787776 5789999998


Q ss_pred             CCCCCcceeEecccCCCCcCceEECCCCCEEEEeecC
Q 018474          220 KGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKM  256 (355)
Q Consensus       220 ~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~  256 (355)
                      ..... ..+...+.. .....+.+++||...++.+..
T Consensus       154 ~~~~c-~~~liPe~~-~~i~sl~v~~dgsml~a~nnk  188 (311)
T KOG0315|consen  154 GENSC-THELIPEDD-TSIQSLTVMPDGSMLAAANNK  188 (311)
T ss_pred             cCCcc-ccccCCCCC-cceeeEEEcCCCcEEEEecCC
Confidence            54321 112122111 123445667777766666543

>PTZ00421 coronin; Provisional

Probab=97.12  E-value=0.31  Score=47.68  Aligned_cols=110  Identities=6%  Similarity=-0.008  Sum_probs=67.8

Q ss_pred             CCcccCeEECC-CCCEEEEeCCCcEEE-Ec-CCC-e--------EEEcCCcCCcccEEEccCC-cEEEEeCCCCCCCccc
Q 018474           93 SQSLLGLTTTK-DGGVILCDNEKGLLK-VT-EEG-V--------EAIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDF  159 (355)
Q Consensus        93 ~~p~~gl~~d~-~g~L~v~~~~~gl~~-~~-~~g-~--------~~~~~~~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~  159 (355)
                      +.+. ++++++ +++++++...++.++ ++ +++ .        ..+......+..+.+.|++ ++.++.+.        
T Consensus        76 ~~V~-~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~--------  146 (493)
T PTZ00421         76 GPII-DVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGA--------  146 (493)
T ss_pred             CCEE-EEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeC--------
Confidence            3466 888987 676655544555444 44 332 1        2222222567888898875 56655332        


Q ss_pred             cccccccCCCCeEEEEeCCCCeEEEeec-cccccccEEEeCCCCEEEEEeCCCCeEEEEEeCC
Q 018474          160 YKDMAEGKPYGQLRKYDPKLKETTVLHE-GFYFANGIALSKNEDFVVVCESWKFRCRRYWLKG  221 (355)
Q Consensus       160 ~~~~~~~~~~g~l~~~dp~~~~~~~~~~-~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~  221 (355)
                               .+.+..||..+++...... .....+.+++++|++ ++++....+.|..||+..
T Consensus       147 ---------DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rs  199 (493)
T PTZ00421        147 ---------DMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRD  199 (493)
T ss_pred             ---------CCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCC
Confidence                     4578888887775433222 223356789999998 455556678899999854

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=97.10  E-value=0.002  Score=39.73  Aligned_cols=37  Identities=22%  Similarity=0.068  Sum_probs=32.7

Q ss_pred             eccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCC
Q 018474          186 HEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGD  222 (355)
Q Consensus       186 ~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~  222 (355)
                      ..++..|+|+++++.++.+||++.....|.+.+++|.
T Consensus         5 ~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~   41 (43)
T smart00135        5 SEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT   41 (43)
T ss_pred             ECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence            4467789999999999999999999999999998763

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.09  E-value=0.29  Score=48.36  Aligned_cols=106  Identities=12%  Similarity=0.079  Sum_probs=62.3

Q ss_pred             CCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCe------------EEEeeccccccccEEEe
Q 018474          132 SFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE------------TTVLHEGFYFANGIALS  198 (355)
Q Consensus       132 ~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~------------~~~~~~~~~~pngi~~~  198 (355)
                      ..|.++.++||| .+|+++..                 ...+-.+|.++.+            +..-..-...|-..+|+
T Consensus       321 KsPHGV~vSPDGkylyVankl-----------------S~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFD  383 (635)
T PRK02888        321 KNPHGVNTSPDGKYFIANGKL-----------------SPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFD  383 (635)
T ss_pred             CCccceEECCCCCEEEEeCCC-----------------CCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEEC
Confidence            789999999999 57776543                 2234445543322            11111223468889999


Q ss_pred             CCCCEEEEEeCCCCeEEEEEeCCC----CCcceeEecccCC--CCcCce------EECCCCCEEEEeec
Q 018474          199 KNEDFVVVCESWKFRCRRYWLKGD----RAGILDAFIENLP--GGPDNI------NLAPDGSFWIGLIK  255 (355)
Q Consensus       199 ~dg~~l~v~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~--g~p~~i------~~d~~G~lwv~~~~  255 (355)
                      .+|+ .|.+=--.+.|.+|+++..    +-.......+..+  -.|.-+      ..+++|+++++.+.
T Consensus       384 g~G~-aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk  451 (635)
T PRK02888        384 GRGN-AYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNK  451 (635)
T ss_pred             CCCC-EEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccc
Confidence            9997 8877766789999998531    0001111222111  112223      34889999999876

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=97.07  E-value=0.087  Score=52.10  Aligned_cols=196  Identities=14%  Similarity=0.127  Sum_probs=114.4

Q ss_pred             CCcccCeEECCCCCEEEEeCCCcEEEEc-C-CC--eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCC
Q 018474           93 SQSLLGLTTTKDGGVILCDNEKGLLKVT-E-EG--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKP  168 (355)
Q Consensus        93 ~~p~~gl~~d~~g~L~v~~~~~gl~~~~-~-~g--~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~  168 (355)
                      +..+ |..+.++.++.+..+.++-.|+. . +-  +-.+.....=+-++.+.|.|..+++-+.               ..
T Consensus       452 GPVy-g~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~---------------D~  515 (707)
T KOG0263|consen  452 GPVY-GCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASH---------------DQ  515 (707)
T ss_pred             Ccee-eeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCC---------------Cc
Confidence            4467 88888888888877666655554 2 22  2223322233556778888754444332               22


Q ss_pred             CCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCC
Q 018474          169 YGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGS  248 (355)
Q Consensus       169 ~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~  248 (355)
                      +.++|..|- +.-.+.++..+.--+.+.|+|+.+ ...+++....+..|++..+  ..++.|. +..+-...+++.+.|+
T Consensus       516 tArLWs~d~-~~PlRifaghlsDV~cv~FHPNs~-Y~aTGSsD~tVRlWDv~~G--~~VRiF~-GH~~~V~al~~Sp~Gr  590 (707)
T KOG0263|consen  516 TARLWSTDH-NKPLRIFAGHLSDVDCVSFHPNSN-YVATGSSDRTVRLWDVSTG--NSVRIFT-GHKGPVTALAFSPCGR  590 (707)
T ss_pred             eeeeeeccc-CCchhhhcccccccceEEECCccc-ccccCCCCceEEEEEcCCC--cEEEEec-CCCCceEEEEEcCCCc
Confidence            446776653 333444555555566799999986 4455555666777776432  3456665 3334345678999997


Q ss_pred             EEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEe-C
Q 018474          249 FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-D  327 (355)
Q Consensus       249 lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~  327 (355)
                      +.++...                                    .+-|...|-..|+.+..+..+.|    .+.++.+. +
T Consensus       591 ~LaSg~e------------------------------------d~~I~iWDl~~~~~v~~l~~Ht~----ti~SlsFS~d  630 (707)
T KOG0263|consen  591 YLASGDE------------------------------------DGLIKIWDLANGSLVKQLKGHTG----TIYSLSFSRD  630 (707)
T ss_pred             eEeeccc------------------------------------CCcEEEEEcCCCcchhhhhcccC----ceeEEEEecC
Confidence            6665433                                    13455556546666666655544    34445543 4


Q ss_pred             CEEEEeecCCCeEEEeeCCCCC
Q 018474          328 GNLYLASLQSNFIGILPLDGPE  349 (355)
Q Consensus       328 g~L~v~~~~~~~i~~~~~~~~~  349 (355)
                      |.+.+.+-..+.|...++....
T Consensus       631 g~vLasgg~DnsV~lWD~~~~~  652 (707)
T KOG0263|consen  631 GNVLASGGADNSVRLWDLTKVI  652 (707)
T ss_pred             CCEEEecCCCCeEEEEEchhhc
Confidence            6666666667777776655443

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=97.04  E-value=0.043  Score=50.54  Aligned_cols=154  Identities=10%  Similarity=0.067  Sum_probs=92.6

Q ss_pred             CCCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeecc--CCCcccCeEECCCCCEEEE-eCCCcEEEEcCCC-
Q 018474           48 EGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI--DSQSLLGLTTTKDGGVILC-DNEKGLLKVTEEG-  123 (355)
Q Consensus        48 ~~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~--~~~p~~gl~~d~~g~L~v~-~~~~gl~~~~~~g-  123 (355)
                      +|..+.-..|.+.|+++.|..+..+.-+..+|..+|...+....  +..+. +.++-+||.=+|+ ...++++..+.+| 
T Consensus       266 vgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~-sc~W~pDg~~~V~Gs~dr~i~~wdlDgn  344 (519)
T KOG0293|consen  266 VGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVS-SCAWCPDGFRFVTGSPDRTIIMWDLDGN  344 (519)
T ss_pred             ecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcc-eeEEccCCceeEecCCCCcEEEecCCcc
Confidence            35455666788888777777666666688888888865543322  34566 7788888865554 4445688887665 


Q ss_pred             -eEEEc-CCcCCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCC
Q 018474          124 -VEAIV-PDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKN  200 (355)
Q Consensus       124 -~~~~~-~~~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~d  200 (355)
                       ..... .....+.++++.+||. ++..+..                  -.+.-|+-.+..-+-+...-..-..+++|.|
T Consensus       345 ~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d------------------~~i~l~~~e~~~dr~lise~~~its~~iS~d  406 (519)
T KOG0293|consen  345 ILGNWEGVRDPKVHDLAITYDGKYVLLVTVD------------------KKIRLYNREARVDRGLISEEQPITSFSISKD  406 (519)
T ss_pred             hhhcccccccceeEEEEEcCCCcEEEEEecc------------------cceeeechhhhhhhccccccCceeEEEEcCC
Confidence             22221 1124688999999994 5443322                  1233333322211111111222345789999


Q ss_pred             CCEEEEEeCCCCeEEEEEeCC
Q 018474          201 EDFVVVCESWKFRCRRYWLKG  221 (355)
Q Consensus       201 g~~l~v~~~~~~~i~~~~~~~  221 (355)
                      ++ +...+...+.+..+|++.
T Consensus       407 ~k-~~LvnL~~qei~LWDl~e  426 (519)
T KOG0293|consen  407 GK-LALVNLQDQEIHLWDLEE  426 (519)
T ss_pred             Cc-EEEEEcccCeeEEeecch
Confidence            98 555566788999999864

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=97.03  E-value=0.12  Score=47.63  Aligned_cols=156  Identities=14%  Similarity=0.178  Sum_probs=88.3

Q ss_pred             CCCCceEEEeeCCCeEEEEecCCE------EEEEEcCC--Ce---eE-----EeeccC--------CCcccCeEECCCCC
Q 018474           51 VNHPEDVSVVVSKGALYTATRDGW------VKYFILHN--ET---LV-----NWKHID--------SQSLLGLTTTKDGG  106 (355)
Q Consensus        51 ~~~p~~i~~d~~~g~l~~~~~~g~------i~~~~~~~--g~---~~-----~~~~~~--------~~p~~gl~~d~~g~  106 (355)
                      +.+-.+|..++.++.+|+-+-+|.      ++.+....  +.   ..     .+....        ..+. ||++.++|.
T Consensus        19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~E-gi~~~~~g~   97 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPE-GIAVPPDGS   97 (326)
T ss_pred             cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChh-HeEEecCCC
Confidence            556688888866777877666666      66555422  11   11     111111        1466 899988999


Q ss_pred             EEEEeC-C------CcEEEEcCCC--eEEE--cCC--------c-----CCcccEEEccCCc-EEEEeCCCCCCCccccc
Q 018474          107 VILCDN-E------KGLLKVTEEG--VEAI--VPD--------A-----SFTNDVIAASDGT-LYFTVASTKYTPTDFYK  161 (355)
Q Consensus       107 L~v~~~-~------~gl~~~~~~g--~~~~--~~~--------~-----~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~  161 (355)
                      +||++= .      ..|++++.+|  .+.+  +..        .     ....+|++.+||+ ||+...+....... ..
T Consensus        98 ~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~-~~  176 (326)
T PF13449_consen   98 FWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGP-RA  176 (326)
T ss_pred             EEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCc-cc
Confidence            999863 3      4588888667  3433  111        1     4566799999996 89876542111100 00


Q ss_pred             cccccCCCCeEEEEeCCCCe--EEEe---ec------cccccccEEEeCCCCEEEEEeCC
Q 018474          162 DMAEGKPYGQLRKYDPKLKE--TTVL---HE------GFYFANGIALSKNEDFVVVCESW  210 (355)
Q Consensus       162 ~~~~~~~~g~l~~~dp~~~~--~~~~---~~------~~~~pngi~~~~dg~~l~v~~~~  210 (355)
                      .. .....-++++||+.+..  ...+   .+      ....+..++.-+|++ +++.|..
T Consensus       177 ~~-~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~-lLvLER~  234 (326)
T PF13449_consen  177 NP-DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGR-LLVLERD  234 (326)
T ss_pred             cc-ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCc-EEEEEcc
Confidence            00 11112478899987522  2222   22      122334466667887 7888865

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.03  E-value=0.24  Score=44.93  Aligned_cols=177  Identities=15%  Similarity=0.161  Sum_probs=81.4

Q ss_pred             ceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeec---cCCCcccCeEECCCCCEEEEeCCCcEEEEcCCC--eEEEcC
Q 018474           55 EDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH---IDSQSLLGLTTTKDGGVILCDNEKGLLKVTEEG--VEAIVP  129 (355)
Q Consensus        55 ~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~---~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~~g--~~~~~~  129 (355)
                      .+|.+.  +...|+....|.|++-.-....++++..   ..+.+. ++....++..+++...+.+|+-...|  -+.+..
T Consensus        65 ~~I~f~--~~~g~ivG~~g~ll~T~DgG~tW~~v~l~~~lpgs~~-~i~~l~~~~~~l~~~~G~iy~T~DgG~tW~~~~~  141 (302)
T PF14870_consen   65 NSISFD--GNEGWIVGEPGLLLHTTDGGKTWERVPLSSKLPGSPF-GITALGDGSAELAGDRGAIYRTTDGGKTWQAVVS  141 (302)
T ss_dssp             EEEEEE--TTEEEEEEETTEEEEESSTTSS-EE----TT-SS-EE-EEEEEETTEEEEEETT--EEEESSTTSSEEEEE-
T ss_pred             EEEEec--CCceEEEcCCceEEEecCCCCCcEEeecCCCCCCCee-EEEEcCCCcEEEEcCCCcEEEeCCCCCCeeEccc
Confidence            345554  4456766666755554432335665432   234566 66655566777777665677665544  444333


Q ss_pred             C-cCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEE-EEeCCCCeEEEeecc-ccccccEEEeCCCCEEEE
Q 018474          130 D-ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLR-KYDPKLKETTVLHEG-FYFANGIALSKNEDFVVV  206 (355)
Q Consensus       130 ~-~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~-~~dp~~~~~~~~~~~-~~~pngi~~~~dg~~l~v  206 (355)
                      . ...++++...+||++....+                  .|.+| .+||-...++..... ...-..+.+++|+. ||+
T Consensus       142 ~~~gs~~~~~r~~dG~~vavs~------------------~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~-lw~  202 (302)
T PF14870_consen  142 ETSGSINDITRSSDGRYVAVSS------------------RGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGN-LWM  202 (302)
T ss_dssp             S----EEEEEE-TTS-EEEEET------------------TSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS--EEE
T ss_pred             CCcceeEeEEECCCCcEEEEEC------------------cccEEEEecCCCccceEEccCccceehhceecCCCC-EEE
Confidence            3 36677788888997554433                  23444 456643345554332 34456788999987 777


Q ss_pred             EeCCCCeEEEEEeCCCCCccee-Eeccc-CCCC-cCceEECCCCCEEEEeec
Q 018474          207 CESWKFRCRRYWLKGDRAGILD-AFIEN-LPGG-PDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       207 ~~~~~~~i~~~~~~~~~~~~~~-~~~~~-~~g~-p~~i~~d~~G~lwv~~~~  255 (355)
                      ... .+.|.+=+ ......+.. ...+. ..++ --.++..+++.+|++...
T Consensus       203 ~~~-Gg~~~~s~-~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~  252 (302)
T PF14870_consen  203 LAR-GGQIQFSD-DPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS  252 (302)
T ss_dssp             EET-TTEEEEEE--TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST
T ss_pred             EeC-CcEEEEcc-CCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCC
Confidence            663 34454443 111111111 11111 1111 122467788899998865

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=97.01  E-value=0.33  Score=47.56  Aligned_cols=149  Identities=12%  Similarity=0.015  Sum_probs=85.7

Q ss_pred             CCCceEEEeeCCCeEEEEecCCEEEEEEcCCCee-EEeec--cCCCcccCeEECCCCCEEEEeCCCcEEEEcC-CC--eE
Q 018474           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETL-VNWKH--IDSQSLLGLTTTKDGGVILCDNEKGLLKVTE-EG--VE  125 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~-~~~~~--~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~-~g--~~  125 (355)
                      ..-.++|...+.+.|-++-.+|.|-.+++..+=. +.+.+  ...++. +|++.+.|||+-....+.+..+|. ++  ..
T Consensus        26 s~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE-~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~  104 (691)
T KOG2048|consen   26 SEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIE-SLAWAEGGRLFSSGLSGSITEWDLHTLKQKY  104 (691)
T ss_pred             cceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCcee-eEEEccCCeEEeecCCceEEEEecccCceeE
Confidence            3456778876778888888899999998866522 22222  223566 999998999998876666888884 55  22


Q ss_pred             EEcCCcCCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee---ccccccccEEEeCCC
Q 018474          126 AIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH---EGFYFANGIALSKNE  201 (355)
Q Consensus       126 ~~~~~~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~---~~~~~pngi~~~~dg  201 (355)
                      .+......+-++++.+.+. +-++                  ...|-++.++-..++++...   ..-...-.+++++++
T Consensus       105 ~~d~~gg~IWsiai~p~~~~l~Ig------------------cddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~  166 (691)
T KOG2048|consen  105 NIDSNGGAIWSIAINPENTILAIG------------------CDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTG  166 (691)
T ss_pred             EecCCCcceeEEEeCCccceEEee------------------cCCceEEEEecCCceEEEEeecccccceEEEEEecCCc
Confidence            2222224455555555442 2222                  11233444444444433211   111223456777887


Q ss_pred             CEEEEEeCCCCeEEEEEeC
Q 018474          202 DFVVVCESWKFRCRRYWLK  220 (355)
Q Consensus       202 ~~l~v~~~~~~~i~~~~~~  220 (355)
                      .. +++.+-.+.|..+|..
T Consensus       167 ~~-i~~Gs~Dg~Iriwd~~  184 (691)
T KOG2048|consen  167 TK-IAGGSIDGVIRIWDVK  184 (691)
T ss_pred             cE-EEecccCceEEEEEcC
Confidence            63 4555666678888874

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=97.00  E-value=0.15  Score=50.09  Aligned_cols=161  Identities=17%  Similarity=0.267  Sum_probs=86.6

Q ss_pred             eEecCCCCCCCceEEE---eeCCCeEEEEec--CCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCC-c--
Q 018474           44 TKLGEGCVNHPEDVSV---VVSKGALYTATR--DGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEK-G--  115 (355)
Q Consensus        44 ~~~~~~~~~~p~~i~~---d~~~g~l~~~~~--~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~-g--  115 (355)
                      .+...|. ..-|..++   ++....+|++.-  ++.||||-++ ......    .... ....-.+|+||++...+ +  
T Consensus       237 K~tAlGR-f~HE~a~v~~~~~~~~vvY~gDD~~~~~lYkFVs~-~~~~~~----~~~~-~~~ll~~GtLyaak~~~~g~~  309 (524)
T PF05787_consen  237 KRTALGR-FAHEAAAVVLADPGRVVVYMGDDGRNGYLYKFVSD-KPWDPG----DRAA-NRDLLDEGTLYAAKFNQDGTG  309 (524)
T ss_pred             ceeeccc-ccccceeEEeecCCeEEEEEEecCCCCeEEEEecC-CCCCCc----ccch-hhhhhhCCEeceEEECCCCcE
Confidence            4555664 57778888   645567888753  5778888762 221110    0011 11222466666664331 1  


Q ss_pred             -EEEEc-CC-------C------e--E-EEc------CCcCCcccEEEcc-CCcEEEEeCCCCCC-Ccc-ccccccccCC
Q 018474          116 -LLKVT-EE-------G------V--E-AIV------PDASFTNDVIAAS-DGTLYFTVASTKYT-PTD-FYKDMAEGKP  168 (355)
Q Consensus       116 -l~~~~-~~-------g------~--~-~~~------~~~~~~~~l~~d~-dG~ly~~d~~~~~~-~~~-~~~~~~~~~~  168 (355)
                       -+.+. ..       +      +  . +.+      .....|.++.+++ +|.+||+-+...-. ... ..........
T Consensus       310 ~Wv~L~~~~~~l~~~~~~~~~a~v~~~tr~aA~~~GAT~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~  389 (524)
T PF05787_consen  310 EWVPLGHGQGGLTAKNGFADQADVLIETRRAADAVGATPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNG  389 (524)
T ss_pred             EEEECCCcccccccCCCCCChHHhhhhhhhccccCccccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCc
Confidence             11111 00       0      0  0 000      1127889999998 47999986542100 000 0111112345


Q ss_pred             CCeEEEEeCCCC-------eEEEeec------------------cccccccEEEeCCCCEEEEEeCCCC
Q 018474          169 YGQLRKYDPKLK-------ETTVLHE------------------GFYFANGIALSKNEDFVVVCESWKF  212 (355)
Q Consensus       169 ~g~l~~~dp~~~-------~~~~~~~------------------~~~~pngi~~~~dg~~l~v~~~~~~  212 (355)
                      .|.|++|++..+       +++.+..                  .+..|.+|+++++|+ ||+++....
T Consensus       390 ~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~~~~~~~~f~sPDNL~~d~~G~-LwI~eD~~~  457 (524)
T PF05787_consen  390 YGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGSNKCDDNGFASPDNLAFDPDGN-LWIQEDGGG  457 (524)
T ss_pred             ccEEEEecccCCccccceeEEEEEEEecCcccccccccCcccCCCcCCCCceEECCCCC-EEEEeCCCC
Confidence            688999998766       4444321                  145799999999998 888876543

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=97.00  E-value=0.022  Score=49.03  Aligned_cols=174  Identities=13%  Similarity=0.161  Sum_probs=92.0

Q ss_pred             eEEEeeCCCeEEEEecCCEEEEEEcCCC--eeEEeeccCCCcccCeE---E-CCCCCEEEEeCCCcEEEEc-CCC--eEE
Q 018474           56 DVSVVVSKGALYTATRDGWVKYFILHNE--TLVNWKHIDSQSLLGLT---T-TKDGGVILCDNEKGLLKVT-EEG--VEA  126 (355)
Q Consensus        56 ~i~~d~~~g~l~~~~~~g~i~~~~~~~g--~~~~~~~~~~~p~~gl~---~-d~~g~L~v~~~~~gl~~~~-~~g--~~~  126 (355)
                      +++++.+..+|..+..+.-+..+|.+..  ..+++.   +++. +|.   + ..+..+.-+...+.+...| .+|  ++.
T Consensus       105 ~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~---ghtg-~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~s  180 (334)
T KOG0278|consen  105 AVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEIS---GHTG-GIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQS  180 (334)
T ss_pred             eEEecccchhhhccchHHHhhhhhccCCCCCchhhc---CCCC-cceeEEEeccCceEEeeccCCceEEEEeccCcEEEE
Confidence            3445544555666655553344443222  222322   2333 332   2 3444555443233343445 466  444


Q ss_pred             EcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEE
Q 018474          127 IVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVV  206 (355)
Q Consensus       127 ~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v  206 (355)
                      +-.+ ..++++-+.++|++..+..                  .+.+-.+|+++-+.-.-..-...-+...++|+.. +||
T Consensus       181 L~~~-s~VtSlEvs~dG~ilTia~------------------gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~-~fV  240 (334)
T KOG0278|consen  181 LEFN-SPVTSLEVSQDGRILTIAY------------------GSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKE-FFV  240 (334)
T ss_pred             EecC-CCCcceeeccCCCEEEEec------------------CceeEEeccccccceeeccCccccccccccCCCc-eEE
Confidence            4333 5688999999998765422                  2357777876543322222233345567889885 889


Q ss_pred             EeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474          207 CESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       207 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      +.-....+++||.....  +...+..+.+|-.--+.+.++|.+|.+-..
T Consensus       241 aGged~~~~kfDy~Tge--Ei~~~nkgh~gpVhcVrFSPdGE~yAsGSE  287 (334)
T KOG0278|consen  241 AGGEDFKVYKFDYNTGE--EIGSYNKGHFGPVHCVRFSPDGELYASGSE  287 (334)
T ss_pred             ecCcceEEEEEeccCCc--eeeecccCCCCceEEEEECCCCceeeccCC
Confidence            88777889999985421  122222233332233567777777765544

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.99  E-value=0.43  Score=47.13  Aligned_cols=44  Identities=23%  Similarity=0.257  Sum_probs=29.4

Q ss_pred             CceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeCCEEEEeecC
Q 018474          291 AGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQ  336 (355)
Q Consensus       291 ~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~  336 (355)
                      ..+.+.+||.++|+.+-.+..+.+.....+  ....+|++|+....
T Consensus       480 ~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~--ty~~~G~qYv~~~~  523 (527)
T TIGR03075       480 LEGYFKAFDAKTGEELWKFKTGSGIVGPPV--TYEQDGKQYVAVLS  523 (527)
T ss_pred             CCCeEEEEECCCCCEeEEEeCCCCceecCE--EEEeCCEEEEEEEe
Confidence            346789999889998888876544222222  23468999997653

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=96.99  E-value=0.29  Score=49.55  Aligned_cols=171  Identities=10%  Similarity=0.116  Sum_probs=100.1

Q ss_pred             CCeEEEEecCCEEEEEEcCCCeeEEe-eccCCCcccCeEECCCCCEEEEeCCC-cEEEEc-CCC--eEEEcCCcCCcccE
Q 018474           63 KGALYTATRDGWVKYFILHNETLVNW-KHIDSQSLLGLTTTKDGGVILCDNEK-GLLKVT-EEG--VEAIVPDASFTNDV  137 (355)
Q Consensus        63 ~g~l~~~~~~g~i~~~~~~~g~~~~~-~~~~~~p~~gl~~d~~g~L~v~~~~~-gl~~~~-~~g--~~~~~~~~~~~~~l  137 (355)
                      .+.|.+++.++.|.++....++...+ ....-... .++++.+|+..++.... .+-.++ .++  .+.+.....-+-++
T Consensus        66 s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r-~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l  144 (933)
T KOG1274|consen   66 SNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIR-DLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQL  144 (933)
T ss_pred             ccceEEeeccceEEEeeCCCCCccceeeeeeccce-EEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeee
Confidence            45677778888888887655543311 11122345 78898888877765543 455555 344  44443333567788


Q ss_pred             EEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecccc---------ccccEEEeCCCCEEEEEe
Q 018474          138 IAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFY---------FANGIALSKNEDFVVVCE  208 (355)
Q Consensus       138 ~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~---------~pngi~~~~dg~~l~v~~  208 (355)
                      ..+|+|++....+.                 +|.|+.||..++.......++.         .-.-++++|++..+.+..
T Consensus       145 ~~~p~~~fLAvss~-----------------dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~  207 (933)
T KOG1274|consen  145 SYDPKGNFLAVSSC-----------------DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP  207 (933)
T ss_pred             eEcCCCCEEEEEec-----------------CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeec
Confidence            99999988776443                 6788889887776543333221         113468999976566655


Q ss_pred             CCCCeEEEEEeCCCCCcceeEecccCC-CCcCceEECCCCCEEEEee
Q 018474          209 SWKFRCRRYWLKGDRAGILDAFIENLP-GGPDNINLAPDGSFWIGLI  254 (355)
Q Consensus       209 ~~~~~i~~~~~~~~~~~~~~~~~~~~~-g~p~~i~~d~~G~lwv~~~  254 (355)
                      . ++.|..|+.++-. ..+. +.+... .--.-+.+++.|.+..+..
T Consensus       208 ~-d~~Vkvy~r~~we-~~f~-Lr~~~~ss~~~~~~wsPnG~YiAAs~  251 (933)
T KOG1274|consen  208 V-DNTVKVYSRKGWE-LQFK-LRDKLSSSKFSDLQWSPNGKYIAAST  251 (933)
T ss_pred             c-CCeEEEEccCCce-ehee-ecccccccceEEEEEcCCCcEEeeec
Confidence            4 6789999875521 1111 111111 1122356788886555443

>COG3211 PhoX Predicted phosphatase [General function prediction only]

Probab=96.97  E-value=0.0079  Score=57.69  Aligned_cols=153  Identities=16%  Similarity=0.165  Sum_probs=76.8

Q ss_pred             eEecCCCCCCCceEEEeeCCCeEEEEecCCEEEEEE-------cCCCeeEEeeccCCCcc-cCeEECCCCCEEEEeCCCc
Q 018474           44 TKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFI-------LHNETLVNWKHIDSQSL-LGLTTTKDGGVILCDNEKG  115 (355)
Q Consensus        44 ~~~~~~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~-------~~~g~~~~~~~~~~~p~-~gl~~d~~g~L~v~~~~~g  115 (355)
                      ..++--.+..||+|++.+..+.+|+...++.=..-|       ..-|++.+|....+.-. +-..+    .||+-.....
T Consensus       409 ~~lGAT~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftW----dlF~~aG~~~  484 (616)
T COG3211         409 DKLGATPMDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTW----DLFVEAGNPS  484 (616)
T ss_pred             HHhCCccccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCcccee----eeeeecCCcc
Confidence            445555678999999998888899876654311000       01123333332211000 00001    1222111111


Q ss_pred             EEEEcCCC-eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccc--ccc
Q 018474          116 LLKVTEEG-VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGF--YFA  192 (355)
Q Consensus       116 l~~~~~~g-~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~--~~p  192 (355)
                      ........ +..  .-+..|..|++|+.|+||+.+....-...+..    .+  ...+..=+|++++++.+..+.  ..-
T Consensus       485 ~~~~~~~~~~~~--~~f~~PDnl~fD~~GrLWi~TDg~~s~~~~~~----~G--~~~m~~~~p~~g~~~rf~t~P~g~E~  556 (616)
T COG3211         485 VLEGGASANINA--NWFNSPDNLAFDPWGRLWIQTDGSGSTLRNRF----RG--VTQMLTPDPKTGTIKRFLTGPIGCEF  556 (616)
T ss_pred             ccccccccCccc--ccccCCCceEECCCCCEEEEecCCCCccCccc----cc--ccccccCCCccceeeeeccCCCccee
Confidence            11111000 111  22367999999999999997654210010100    00  012333466777777665443  345


Q ss_pred             ccEEEeCCCCEEEEEe
Q 018474          193 NGIALSKNEDFVVVCE  208 (355)
Q Consensus       193 ngi~~~~dg~~l~v~~  208 (355)
                      .|.+++||++.+++.-
T Consensus       557 tG~~FspD~~TlFV~v  572 (616)
T COG3211         557 TGPCFSPDGKTLFVNV  572 (616)
T ss_pred             ecceeCCCCceEEEEe
Confidence            6899999999888863

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=96.96  E-value=0.19  Score=45.63  Aligned_cols=157  Identities=13%  Similarity=0.068  Sum_probs=90.3

Q ss_pred             eEecCCCCCCCceEEEeeCCCeEEE-EecCCEEEEEEcCCCeeEEeecc-CCCcccCeEECCCC-CEEEEeCCCcEEEEc
Q 018474           44 TKLGEGCVNHPEDVSVVVSKGALYT-ATRDGWVKYFILHNETLVNWKHI-DSQSLLGLTTTKDG-GVILCDNEKGLLKVT  120 (355)
Q Consensus        44 ~~~~~~~~~~p~~i~~d~~~g~l~~-~~~~g~i~~~~~~~g~~~~~~~~-~~~p~~gl~~d~~g-~L~v~~~~~gl~~~~  120 (355)
                      .++..|.+..-.++++|| ++.+|+ ++.|+.|-.+|..+|+++..... ..... ++++.... .||-+.-.+.+-++|
T Consensus       144 ~rVi~gHlgWVr~vavdP-~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr-~vavS~rHpYlFs~gedk~VKCwD  221 (460)
T KOG0285|consen  144 YRVISGHLGWVRSVAVDP-GNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVR-GVAVSKRHPYLFSAGEDKQVKCWD  221 (460)
T ss_pred             hhhhhhccceEEEEeeCC-CceeEEecCCCceeEEEEcccCeEEEeecchhheee-eeeecccCceEEEecCCCeeEEEe
Confidence            345567778899999995 555555 56689999999999988754431 23355 78886443 344444334466777


Q ss_pred             -C-CC-eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecccccc-ccEE
Q 018474          121 -E-EG-VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFA-NGIA  196 (355)
Q Consensus       121 -~-~g-~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~p-ngi~  196 (355)
                       . +. ++.+......+..+...|.-.+.++.+.                 .-.+-.||-.++.-.....+...| +.+.
T Consensus       222 Le~nkvIR~YhGHlS~V~~L~lhPTldvl~t~gr-----------------Dst~RvWDiRtr~~V~~l~GH~~~V~~V~  284 (460)
T KOG0285|consen  222 LEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGR-----------------DSTIRVWDIRTRASVHVLSGHTNPVASVM  284 (460)
T ss_pred             chhhhhHHHhccccceeEEEeccccceeEEecCC-----------------cceEEEeeecccceEEEecCCCCcceeEE
Confidence             3 33 5555555567777877776666666443                 123444555444322222222222 1222


Q ss_pred             EeC-CCCEEEEEeCCCCeEEEEEeCC
Q 018474          197 LSK-NEDFVVVCESWKFRCRRYWLKG  221 (355)
Q Consensus       197 ~~~-dg~~l~v~~~~~~~i~~~~~~~  221 (355)
                      +.+ |.+ + ++.+....|..+|+..
T Consensus       285 ~~~~dpq-v-it~S~D~tvrlWDl~a  308 (460)
T KOG0285|consen  285 CQPTDPQ-V-ITGSHDSTVRLWDLRA  308 (460)
T ss_pred             eecCCCc-e-EEecCCceEEEeeecc
Confidence            222 333 3 4455667787788754

>PTZ00420 coronin; Provisional

Probab=96.95  E-value=0.48  Score=47.01  Aligned_cols=110  Identities=6%  Similarity=-0.072  Sum_probs=66.2

Q ss_pred             CCcccCeEECCC-CCEEEEeCCCcEEEE-c-CCC---eE-------EEcCCcCCcccEEEccCCcEE-EEeCCCCCCCcc
Q 018474           93 SQSLLGLTTTKD-GGVILCDNEKGLLKV-T-EEG---VE-------AIVPDASFTNDVIAASDGTLY-FTVASTKYTPTD  158 (355)
Q Consensus        93 ~~p~~gl~~d~~-g~L~v~~~~~gl~~~-~-~~g---~~-------~~~~~~~~~~~l~~d~dG~ly-~~d~~~~~~~~~  158 (355)
                      ..+. .+++.++ ++++++...++.+++ + +++   .+       .+......+++++++|++... ++.+.       
T Consensus        75 ~~V~-~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~-------  146 (568)
T PTZ00420         75 SSIL-DLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGF-------  146 (568)
T ss_pred             CCEE-EEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeC-------
Confidence            3466 8888875 566665555554444 4 332   11       122222568889999988543 44322       


Q ss_pred             ccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCC
Q 018474          159 FYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKG  221 (355)
Q Consensus       159 ~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~  221 (355)
                                .+.+..||..+++.............+++++||+.+ ++....+.|..|++..
T Consensus       147 ----------DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lL-at~s~D~~IrIwD~Rs  198 (568)
T PTZ00420        147 ----------DSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLL-SGTCVGKHMHIIDPRK  198 (568)
T ss_pred             ----------CCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEE-EEEecCCEEEEEECCC
Confidence                      456888888776543222222335678999999954 5544567888899854

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=96.94  E-value=0.032  Score=51.05  Aligned_cols=160  Identities=14%  Similarity=0.195  Sum_probs=94.7

Q ss_pred             CCCCCCCceEEEeeC-CCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCCcEEE-EcC-CC-
Q 018474           48 EGCVNHPEDVSVVVS-KGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLK-VTE-EG-  123 (355)
Q Consensus        48 ~~~~~~p~~i~~d~~-~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~-~~~-~g-  123 (355)
                      +|.-..--.++++|- .+.|..+..+..|..+|..+|+...-......++ ++.+..+|.+++++..+.-+| +++ +| 
T Consensus       128 ~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~-S~sfn~dGs~l~TtckDKkvRv~dpr~~~  206 (472)
T KOG0303|consen  128 YGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVY-SMSFNRDGSLLCTTCKDKKVRVIDPRRGT  206 (472)
T ss_pred             eecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecCCCCeEE-EEEeccCCceeeeecccceeEEEcCCCCc
Confidence            343344445566653 3445566678889999998887544333445577 889999999999987755444 454 66 


Q ss_pred             e-EEE-cCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEE---Ee
Q 018474          124 V-EAI-VPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIA---LS  198 (355)
Q Consensus       124 ~-~~~-~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~---~~  198 (355)
                      + ..- ......+.-..+-.+|.+. ++.-++.+             ...+-.|||+.-+.-.....+-..||+.   ++
T Consensus       207 ~v~e~~~heG~k~~Raifl~~g~i~-tTGfsr~s-------------eRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD  272 (472)
T KOG0303|consen  207 VVSEGVAHEGAKPARAIFLASGKIF-TTGFSRMS-------------ERQIALWDPNNLEEPIALQELDTSNGVLLPFYD  272 (472)
T ss_pred             EeeecccccCCCcceeEEeccCcee-eecccccc-------------ccceeccCcccccCcceeEEeccCCceEEeeec
Confidence            3 222 1122445555666677643 33322211             1223345554322211222333455554   57


Q ss_pred             CCCCEEEEEeCCCCeEEEEEeCCC
Q 018474          199 KNEDFVVVCESWKFRCRRYWLKGD  222 (355)
Q Consensus       199 ~dg~~l~v~~~~~~~i~~~~~~~~  222 (355)
                      +|.+.+|++.-+.+.|..|.++..
T Consensus       273 ~dt~ivYl~GKGD~~IRYyEit~d  296 (472)
T KOG0303|consen  273 PDTSIVYLCGKGDSSIRYFEITNE  296 (472)
T ss_pred             CCCCEEEEEecCCcceEEEEecCC
Confidence            899999999999999998888653

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=96.89  E-value=0.4  Score=45.08  Aligned_cols=236  Identities=12%  Similarity=0.143  Sum_probs=121.9

Q ss_pred             eEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECC-CCCEEEEeCCCc---EEEEcCCC-eEEEcCC
Q 018474           56 DVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTK-DGGVILCDNEKG---LLKVTEEG-VEAIVPD  130 (355)
Q Consensus        56 ~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~-~g~L~v~~~~~g---l~~~~~~g-~~~~~~~  130 (355)
                      ++-+...+..+..+..+|.+..+|..+|+.++.-.....|  ++-+|- +..=+++....+   +++++.++ ++.+...
T Consensus       281 slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~--~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH  358 (524)
T KOG0273|consen  281 SLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAP--ALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGH  358 (524)
T ss_pred             EEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCC--ccceEEecCceEeecCCCceEEEEEecCCCcceeeecc
Confidence            5556644555666777899999998888765432222223  233331 222334333333   44455455 5555545


Q ss_pred             cCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccc-cEEEeCCCCEEEEEeC
Q 018474          131 ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFAN-GIALSKNEDFVVVCES  209 (355)
Q Consensus       131 ~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pn-gi~~~~dg~~l~v~~~  209 (355)
                      ...++.+-.++.|.|..+-+.      +....+|.....+.+-++..-++++....   ..|. .+.-.|..+....+..
T Consensus       359 ~g~V~alk~n~tg~LLaS~Sd------D~TlkiWs~~~~~~~~~l~~Hskei~t~~---wsp~g~v~~n~~~~~~l~sas  429 (524)
T KOG0273|consen  359 HGEVNALKWNPTGSLLASCSD------DGTLKIWSMGQSNSVHDLQAHSKEIYTIK---WSPTGPVTSNPNMNLMLASAS  429 (524)
T ss_pred             cCceEEEEECCCCceEEEecC------CCeeEeeecCCCcchhhhhhhccceeeEe---ecCCCCccCCCcCCceEEEee
Confidence            578999999999998887654      12233333222222222222222222211   1111 1122232232334444


Q ss_pred             CCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCC
Q 018474          210 WKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGS  289 (355)
Q Consensus       210 ~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (355)
                      ..+.|..|++....  ...+|.. ...--..+.+.++|++...-.-                                  
T Consensus       430 ~dstV~lwdv~~gv--~i~~f~k-H~~pVysvafS~~g~ylAsGs~----------------------------------  472 (524)
T KOG0273|consen  430 FDSTVKLWDVESGV--PIHTLMK-HQEPVYSVAFSPNGRYLASGSL----------------------------------  472 (524)
T ss_pred             cCCeEEEEEccCCc--eeEeecc-CCCceEEEEecCCCcEEEecCC----------------------------------
Confidence            56777788874321  1222321 1111245778888976554322                                  


Q ss_pred             CCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEE-eCCEEEEeecCCCeEEEeeCC
Q 018474          290 DAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAE-FDGNLYLASLQSNFIGILPLD  346 (355)
Q Consensus       290 ~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~  346 (355)
                        .++|...+.+.|+.+..|.+..|     +..++- .+|....+.....-+-+++++
T Consensus       473 --dg~V~iws~~~~~l~~s~~~~~~-----Ifel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  473 --DGCVHIWSTKTGKLVKSYQGTGG-----IFELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             --CCeeEeccccchheeEeecCCCe-----EEEEEEcCCCCEEEEEecCCCceEEEec
Confidence              24666666668888888877554     334443 235555666666666666654

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=96.89  E-value=0.26  Score=43.03  Aligned_cols=160  Identities=14%  Similarity=0.117  Sum_probs=97.3

Q ss_pred             CceEecC--CCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCC-----
Q 018474           42 GLTKLGE--GCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEK-----  114 (355)
Q Consensus        42 ~~~~~~~--~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~-----  114 (355)
                      +.+++++  |.-..--++.+|.+...+..++.|..+..+|.++|+.....+.+.... .+-++.+|++.++...+     
T Consensus        41 nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk-~~~F~~~gn~~l~~tD~~mg~~  119 (327)
T KOG0643|consen   41 NGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVK-RVDFSFGGNLILASTDKQMGYT  119 (327)
T ss_pred             CCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeE-EEeeccCCcEEEEEehhhcCcc
Confidence            3466654  333334466667666778888889989999999997665444444455 77888888876654321     


Q ss_pred             c---EEEEc-CC----C---eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEE
Q 018474          115 G---LLKVT-EE----G---VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT  183 (355)
Q Consensus       115 g---l~~~~-~~----g---~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~  183 (355)
                      +   ++++- ..    +   ...+......+.....++-|...++.                 ...|.+-+||..+|+..
T Consensus       120 ~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~G-----------------he~G~is~~da~~g~~~  182 (327)
T KOG0643|consen  120 CFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAG-----------------HEDGSISIYDARTGKEL  182 (327)
T ss_pred             eEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEe-----------------cCCCcEEEEEcccCcee
Confidence            2   23332 11    1   22233333556666667666544442                 23678999999887543


Q ss_pred             Eeec--cccccccEEEeCCCCEEEEEeCCCCeEEEEEeC
Q 018474          184 VLHE--GFYFANGIALSKNEDFVVVCESWKFRCRRYWLK  220 (355)
Q Consensus       184 ~~~~--~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~  220 (355)
                      +-..  .-...|.+++++|.. .+++.+....-..+|..
T Consensus       183 v~s~~~h~~~Ind~q~s~d~T-~FiT~s~Dttakl~D~~  220 (327)
T KOG0643|consen  183 VDSDEEHSSKINDLQFSRDRT-YFITGSKDTTAKLVDVR  220 (327)
T ss_pred             eechhhhccccccccccCCcc-eEEecccCccceeeecc
Confidence            3221  124568899999986 67777665555556653

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.87  E-value=0.27  Score=42.89  Aligned_cols=147  Identities=14%  Similarity=0.011  Sum_probs=79.7

Q ss_pred             CceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEc-CCC--eEEEcCC
Q 018474           54 PEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT-EEG--VEAIVPD  130 (355)
Q Consensus        54 p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~-~~g--~~~~~~~  130 (355)
                      |--+.-| ....+|+++..+.+..+|+.+|...--...+.+.. +-+.--.+.+.++-..+++|.+. ++|  ...+...
T Consensus        15 pLVV~~d-skT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE-~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~   92 (354)
T KOG4649|consen   15 PLVVCND-SKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIE-CSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL   92 (354)
T ss_pred             cEEEecC-CceEEEEecCCceEEEecCCCCcEEeehhhCceee-eeeEEECCEEEEEEccCcEEEEEecchhheeeeeeh
Confidence            3333444 45678999999999999999997542222234443 33222223355666667788887 566  2211111


Q ss_pred             cCCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEE-eeccccccccEEEeCCCCEEEEEe
Q 018474          131 ASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV-LHEGFYFANGIALSKNEDFVVVCE  208 (355)
Q Consensus       131 ~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~-~~~~~~~pngi~~~~dg~~l~v~~  208 (355)
                      ...--.-..|.++ -||.+..                  ++.+|..|+.+..-.. ..-+...-.+=++.+-...||++.
T Consensus        93 ~~vk~~a~~d~~~glIycgsh------------------d~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~  154 (354)
T KOG4649|consen   93 ETVKVRAQCDFDGGLIYCGSH------------------DGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAI  154 (354)
T ss_pred             hhhccceEEcCCCceEEEecC------------------CCcEEEecccccceEEecccCCceeccceecCCCceEEEEe
Confidence            1111123566665 5666543                  4567778876543211 111111122235666334599886


Q ss_pred             CCCCeEEEEEeCC
Q 018474          209 SWKFRCRRYWLKG  221 (355)
Q Consensus       209 ~~~~~i~~~~~~~  221 (355)
                      + .+++.+.+.+.
T Consensus       155 t-~G~vlavt~~~  166 (354)
T KOG4649|consen  155 T-AGAVLAVTKNP  166 (354)
T ss_pred             c-cceEEEEccCC
Confidence            5 57888887643

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=96.86  E-value=0.3  Score=43.33  Aligned_cols=164  Identities=15%  Similarity=0.204  Sum_probs=89.3

Q ss_pred             ceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccC---CCcccCeEECCCCCEEEE-eCCCcEEEEc-CCC--eEEE
Q 018474           55 EDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHID---SQSLLGLTTTKDGGVILC-DNEKGLLKVT-EEG--VEAI  127 (355)
Q Consensus        55 ~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~---~~p~~gl~~d~~g~L~v~-~~~~gl~~~~-~~g--~~~~  127 (355)
                      ..+.++|++..+..+..|..|+.++. .|.-+.+....   +-+- ++.+.++++..++ ...+.++.+| .+|  .+.+
T Consensus        51 ~~~~F~P~gs~~aSgG~Dr~I~LWnv-~gdceN~~~lkgHsgAVM-~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~  128 (338)
T KOG0265|consen   51 YTIKFHPDGSCFASGGSDRAIVLWNV-YGDCENFWVLKGHSGAVM-ELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKH  128 (338)
T ss_pred             EEEEECCCCCeEeecCCcceEEEEec-cccccceeeeccccceeE-eeeeccCCCEEEEecCCceEEEEecccceeeehh
Confidence            34567764444445667888988876 33333332211   2244 6667788875554 4445677777 577  4434


Q ss_pred             cCCcCCcccEEEccCCcEEEEeCCCC-----CCCc------cc--------------cccccccCCCCeEEEEeCCCCeE
Q 018474          128 VPDASFTNDVIAASDGTLYFTVASTK-----YTPT------DF--------------YKDMAEGKPYGQLRKYDPKLKET  182 (355)
Q Consensus       128 ~~~~~~~~~l~~d~dG~ly~~d~~~~-----~~~~------~~--------------~~~~~~~~~~g~l~~~dp~~~~~  182 (355)
                      .....++|.+.....|-..++..+..     |..+      ..              ...+..+.-.+.+-.||+..++.
T Consensus       129 k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~  208 (338)
T KOG0265|consen  129 KGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDG  208 (338)
T ss_pred             ccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcc
Confidence            33335666655444453333322100     0110      10              11123333344566778765555


Q ss_pred             EEeecccc-ccccEEEeCCCCEEEEEeCCCCeEEEEEeCC
Q 018474          183 TVLHEGFY-FANGIALSKNEDFVVVCESWKFRCRRYWLKG  221 (355)
Q Consensus       183 ~~~~~~~~-~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~  221 (355)
                      .....+-. .-.++.++++|. ...++...+.+.++++.-
T Consensus       209 ~~~lsGh~DtIt~lsls~~gs-~llsnsMd~tvrvwd~rp  247 (338)
T KOG0265|consen  209 LYTLSGHADTITGLSLSRYGS-FLLSNSMDNTVRVWDVRP  247 (338)
T ss_pred             eEEeecccCceeeEEeccCCC-ccccccccceEEEEEecc
Confidence            44443322 246889999998 557778888888888753

>PHA02713 hypothetical protein; Provisional

Probab=96.70  E-value=0.59  Score=46.56  Aligned_cols=119  Identities=10%  Similarity=0.073  Sum_probs=64.2

Q ss_pred             EEEEEEcCCCeeEEeeccCCCc--ccCeEECCCCCEEEEeCC-------CcEEEEcC-CC-eEEEcCCc-CCcccEEEcc
Q 018474           74 WVKYFILHNETLVNWKHIDSQS--LLGLTTTKDGGVILCDNE-------KGLLKVTE-EG-VEAIVPDA-SFTNDVIAAS  141 (355)
Q Consensus        74 ~i~~~~~~~g~~~~~~~~~~~p--~~gl~~d~~g~L~v~~~~-------~gl~~~~~-~g-~~~~~~~~-~~~~~l~~d~  141 (355)
                      .+.++|+.++++..+.......  . +.+. -++.||+....       ..+++|++ ++ .+.++.-. ..-..-+..-
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~~-~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~  350 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIINY-ASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI  350 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccce-EEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE
Confidence            4788999898888765432211  2 3333 36789987532       12678884 44 44433321 1111223334


Q ss_pred             CCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecccc--ccccEEEeCCCCEEEEEe
Q 018474          142 DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFY--FANGIALSKNEDFVVVCE  208 (355)
Q Consensus       142 dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~--~pngi~~~~dg~~l~v~~  208 (355)
                      +|.||+.....            .......+.+|||.+++++.+..-..  .-.+++ .-+++ +|+..
T Consensus       351 ~g~IYviGG~~------------~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~-~~~g~-IYviG  405 (557)
T PHA02713        351 DDTIYAIGGQN------------GTNVERTIECYTMGDDKWKMLPDMPIALSSYGMC-VLDQY-IYIIG  405 (557)
T ss_pred             CCEEEEECCcC------------CCCCCceEEEEECCCCeEEECCCCCcccccccEE-EECCE-EEEEe
Confidence            78999864320            00112368999999999887543211  111222 23454 88865

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.69  E-value=0.47  Score=45.42  Aligned_cols=129  Identities=16%  Similarity=0.081  Sum_probs=73.6

Q ss_pred             EEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCCC---cEEEEcCC-C-eEEEcCCcCCcc-cEEEccCC-cE
Q 018474           74 WVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEK---GLLKVTEE-G-VEAIVPDASFTN-DVIAASDG-TL  145 (355)
Q Consensus        74 ~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~~---gl~~~~~~-g-~~~~~~~~~~~~-~l~~d~dG-~l  145 (355)
                      +++..+.++++...+....+.-. ...+.+||+ |.++....   .+|.+|.. + ...+.... .++ +=.+.||| .|
T Consensus       219 ~i~~~~l~~g~~~~i~~~~g~~~-~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~-gi~~~Ps~spdG~~i  296 (425)
T COG0823         219 RIYYLDLNTGKRPVILNFNGNNG-APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGF-GINTSPSWSPDGSKI  296 (425)
T ss_pred             eEEEEeccCCccceeeccCCccC-CccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCC-ccccCccCCCCCCEE
Confidence            47777777666555443322222 345667776 33333332   37777743 3 44443332 111 33577899 56


Q ss_pred             EEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCCCe--EEEEEe
Q 018474          146 YFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFR--CRRYWL  219 (355)
Q Consensus       146 y~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~--i~~~~~  219 (355)
                      +|+...             .+  .-.+|++|+++++.+.+.........-.++|||+.+.+.....+.  |..+++
T Consensus       297 vf~Sdr-------------~G--~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~  357 (425)
T COG0823         297 VFTSDR-------------GG--RPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDL  357 (425)
T ss_pred             EEEeCC-------------CC--CcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEecc
Confidence            666433             11  226999999988877665444433345789999988777743333  445554

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.66  E-value=0.2  Score=45.72  Aligned_cols=107  Identities=16%  Similarity=0.180  Sum_probs=63.4

Q ss_pred             CCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCCCe---------EEEEEeCCCCCcceeEecccC-----
Q 018474          169 YGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFR---------CRRYWLKGDRAGILDAFIENL-----  234 (355)
Q Consensus       169 ~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~---------i~~~~~~~~~~~~~~~~~~~~-----  234 (355)
                      .++++.+|.+++++.=..+....++ ++++||++.+|++++.-.|         |..||.++... ..++.+...     
T Consensus        16 ~~rv~viD~d~~k~lGmi~~g~~~~-~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~-~~EI~iP~k~R~~~   93 (342)
T PF06433_consen   16 TSRVYVIDADSGKLLGMIDTGFLGN-VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSP-TGEIEIPPKPRAQV   93 (342)
T ss_dssp             SEEEEEEETTTTEEEEEEEEESSEE-EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEE-EEEEEETTS-B--B
T ss_pred             cceEEEEECCCCcEEEEeecccCCc-eeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcc-cceEecCCcchhee
Confidence            3589999999998765555555565 7799999999999874222         34455433211 112222111     


Q ss_pred             CCCcCceEECCCCC-EEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECC
Q 018474          235 PGGPDNINLAPDGS-FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDP  312 (355)
Q Consensus       235 ~g~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~  312 (355)
                      ..++..+.+..||+ ++|-...                                   +...|-.+|-+.++....+..|
T Consensus        94 ~~~~~~~~ls~dgk~~~V~N~T-----------------------------------Pa~SVtVVDl~~~kvv~ei~~P  137 (342)
T PF06433_consen   94 VPYKNMFALSADGKFLYVQNFT-----------------------------------PATSVTVVDLAAKKVVGEIDTP  137 (342)
T ss_dssp             S--GGGEEE-TTSSEEEEEEES-----------------------------------SSEEEEEEETTTTEEEEEEEGT
T ss_pred             cccccceEEccCCcEEEEEccC-----------------------------------CCCeEEEEECCCCceeeeecCC
Confidence            12456677888887 5665543                                   3356888887567776666554

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=96.65  E-value=0.067  Score=49.36  Aligned_cols=187  Identities=14%  Similarity=0.115  Sum_probs=102.8

Q ss_pred             CCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeecc-CCCcccCeEECCCCCEEEEeCCCcEEEEc--CCC--
Q 018474           49 GCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI-DSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG--  123 (355)
Q Consensus        49 ~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~-~~~p~~gl~~d~~g~L~v~~~~~gl~~~~--~~g--  123 (355)
                      |....-..++++|+|..|-.++.|..=..+|..+++....... ....+ ++++.+||.|..+...+.+-++-  .+|  
T Consensus       259 gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~-~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~  337 (459)
T KOG0272|consen  259 GHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVF-SIAFQPDGSLAATGGLDSLGRVWDLRTGRC  337 (459)
T ss_pred             cchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccc-eeEecCCCceeeccCccchhheeecccCcE
Confidence            3344455667776666666677766555566655533222111 12366 89999999998876555555654  466  


Q ss_pred             eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCe-EEEeeccccccccEEEeCCCC
Q 018474          124 VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE-TTVLHEGFYFANGIALSKNED  202 (355)
Q Consensus       124 ~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~-~~~~~~~~~~pngi~~~~dg~  202 (355)
                      +-.+.....-+.++.++|+|....|.+.                 .+..-.||....+ +..+......-..+.++|+..
T Consensus       338 im~L~gH~k~I~~V~fsPNGy~lATgs~-----------------Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g  400 (459)
T KOG0272|consen  338 IMFLAGHIKEILSVAFSPNGYHLATGSS-----------------DNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEG  400 (459)
T ss_pred             EEEecccccceeeEeECCCceEEeecCC-----------------CCcEEEeeecccccceecccccchhhheEecccCC
Confidence            4444555577889999999987777554                 2334444543221 111111112234688999666


Q ss_pred             EEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeecC
Q 018474          203 FVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKM  256 (355)
Q Consensus       203 ~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~  256 (355)
                      ..+++.+..+.+..|.-.+-  ...+.+. +..+-.-.+.+.++|...++..-.
T Consensus       401 ~fL~TasyD~t~kiWs~~~~--~~~ksLa-GHe~kV~s~Dis~d~~~i~t~s~D  451 (459)
T KOG0272|consen  401 YFLVTASYDNTVKIWSTRTW--SPLKSLA-GHEGKVISLDISPDSQAIATSSFD  451 (459)
T ss_pred             eEEEEcccCcceeeecCCCc--ccchhhc-CCccceEEEEeccCCceEEEeccC
Confidence            67777766666655543221  1122222 111112223455777666655443

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=96.63  E-value=0.16  Score=47.31  Aligned_cols=160  Identities=16%  Similarity=0.128  Sum_probs=78.1

Q ss_pred             CCeEEEEeCCCCeEEEeeccc-cccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCC
Q 018474          169 YGQLRKYDPKLKETTVLHEGF-YFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDG  247 (355)
Q Consensus       169 ~g~l~~~dp~~~~~~~~~~~~-~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G  247 (355)
                      ...+|.+|.++++.+.+..+. ....|..++++.+.+|+.- ...+|.++++++.+....-.+.+...++ ...+.++++
T Consensus        59 ~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~-~~~~l~~vdL~T~e~~~vy~~p~~~~g~-gt~v~n~d~  136 (386)
T PF14583_consen   59 NRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVK-NGRSLRRVDLDTLEERVVYEVPDDWKGY-GTWVANSDC  136 (386)
T ss_dssp             S-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEE-TTTEEEEEETTT--EEEEEE--TTEEEE-EEEEE-TTS
T ss_pred             CcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEE-CCCeEEEEECCcCcEEEEEECCcccccc-cceeeCCCc
Confidence            447999999999998877653 2344788899999876654 2368999998654322111111111111 223457889


Q ss_pred             CEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCC--CCc----cc--c
Q 018474          248 SFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPD--ATY----IS--F  319 (355)
Q Consensus       248 ~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~--g~~----~~--~  319 (355)
                      +.+++....+. -.+-+......+++...             .+..+|+.+|-++|+....+.+..  |.+    ..  .
T Consensus       137 t~~~g~e~~~~-d~~~l~~~~~f~e~~~a-------------~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~l  202 (386)
T PF14583_consen  137 TKLVGIEISRE-DWKPLTKWKGFREFYEA-------------RPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTL  202 (386)
T ss_dssp             SEEEEEEEEGG-G-----SHHHHHHHHHC----------------EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEE
T ss_pred             cEEEEEEEeeh-hccCccccHHHHHHHhh-------------CCCceEEEEECCCCceeEEEecCccccCcccCCCCCCE
Confidence            99888754321 11111222333444332             233689999987888777776654  210    00  1


Q ss_pred             eeEEEEe-----CCEEEEeecCCCeEEEee
Q 018474          320 VTSAAEF-----DGNLYLASLQSNFIGILP  344 (355)
Q Consensus       320 ~~~~~~~-----~g~L~v~~~~~~~i~~~~  344 (355)
                      +..+.|.     +.+||+.+..+..+.++.
T Consensus       203 i~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~  232 (386)
T PF14583_consen  203 IMFCHEGPWDLVDQRIWTINTDGSNVKKVH  232 (386)
T ss_dssp             EEEEE-S-TTTSS-SEEEEETTS---EESS
T ss_pred             EEEeccCCcceeceEEEEEEcCCCcceeee
Confidence            1122232     137999887777666654

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=96.63  E-value=0.12  Score=47.75  Aligned_cols=110  Identities=15%  Similarity=0.181  Sum_probs=61.4

Q ss_pred             CcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeE-EEe-e-cc-------------ccccccEE
Q 018474          133 FTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKET-TVL-H-EG-------------FYFANGIA  196 (355)
Q Consensus       133 ~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~-~~~-~-~~-------------~~~pngi~  196 (355)
                      .+.+|++.++|.+|+++.....           ....-.|++|+++ |++ +.+ . ..             -....+++
T Consensus        86 D~Egi~~~~~g~~~is~E~~~~-----------~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la  153 (326)
T PF13449_consen   86 DPEGIAVPPDGSFWISSEGGRT-----------GGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLA  153 (326)
T ss_pred             ChhHeEEecCCCEEEEeCCccC-----------CCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEE
Confidence            5668999889999999865200           0012478888876 443 222 1 11             12245799


Q ss_pred             EeCCCCEEEEEeCCC---------------CeEEEEEeCCCC--CcceeEecccC-----CCCcCceEECCCCCEEEEee
Q 018474          197 LSKNEDFVVVCESWK---------------FRCRRYWLKGDR--AGILDAFIENL-----PGGPDNINLAPDGSFWIGLI  254 (355)
Q Consensus       197 ~~~dg~~l~v~~~~~---------------~~i~~~~~~~~~--~~~~~~~~~~~-----~g~p~~i~~d~~G~lwv~~~  254 (355)
                      +++||+.||.+....               -+|++|++....  ..++..-.+..     ..-+..+...++|+++|=--
T Consensus       154 ~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER  233 (326)
T PF13449_consen  154 VSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLER  233 (326)
T ss_pred             ECCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEc
Confidence            999999777765432               367778775321  22222112210     11133455556788877553

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=96.61  E-value=0.54  Score=43.94  Aligned_cols=138  Identities=14%  Similarity=0.188  Sum_probs=71.1

Q ss_pred             CCeEEEE-ecCCEEEEEEcCCCeeEEeeccCCCcc-----cCeEECCCCC---EEEEeCC----C--cEEEEcC-CC-eE
Q 018474           63 KGALYTA-TRDGWVKYFILHNETLVNWKHIDSQSL-----LGLTTTKDGG---VILCDNE----K--GLLKVTE-EG-VE  125 (355)
Q Consensus        63 ~g~l~~~-~~~g~i~~~~~~~g~~~~~~~~~~~p~-----~gl~~d~~g~---L~v~~~~----~--gl~~~~~-~g-~~  125 (355)
                      ...++++ ...++++.||. +|+..+.... ++++     .++.+  .|+   |.+++..    +  .+|++++ +| ++
T Consensus        67 ~kSlIigTdK~~GL~VYdL-~Gk~lq~~~~-Gr~NNVDvrygf~l--~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~  142 (381)
T PF02333_consen   67 AKSLIIGTDKKGGLYVYDL-DGKELQSLPV-GRPNNVDVRYGFPL--NGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT  142 (381)
T ss_dssp             GG-EEEEEETTTEEEEEET-TS-EEEEE-S-S-EEEEEEEEEEEE--TTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred             ccceEEEEeCCCCEEEEcC-CCcEEEeecC-CCcceeeeecceec--CCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Confidence            3445554 45788999999 5554443322 3332     03333  232   4454432    1  2777775 66 76


Q ss_pred             EEcCC-------cCCcccEEE--cc-CCcEEEEeCCCCCCCccccccccccCCCCeEE--EE-eCCCCeEE--Ee--ecc
Q 018474          126 AIVPD-------ASFTNDVIA--AS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLR--KY-DPKLKETT--VL--HEG  188 (355)
Q Consensus       126 ~~~~~-------~~~~~~l~~--d~-dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~--~~-dp~~~~~~--~~--~~~  188 (355)
                      .+...       ...+.++|.  ++ +|.+|+--..                ..|.+.  ++ +...+.++  .+  ...
T Consensus       143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~----------------k~G~~~Qy~L~~~~~g~v~~~lVR~f~~  206 (381)
T PF02333_consen  143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNG----------------KDGRVEQYELTDDGDGKVSATLVREFKV  206 (381)
T ss_dssp             E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEE----------------TTSEEEEEEEEE-TTSSEEEEEEEEEE-
T ss_pred             EcCCCCcccccccccceeeEEeecCCCCcEEEEEec----------------CCceEEEEEEEeCCCCcEeeEEEEEecC
Confidence            65432       145677775  33 5677754321                123332  22 22333321  11  223


Q ss_pred             ccccccEEEeCCCCEEEEEeCCCCeEEEEEeCC
Q 018474          189 FYFANGIALSKNEDFVVVCESWKFRCRRYWLKG  221 (355)
Q Consensus       189 ~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~  221 (355)
                      ...+.|++.+.....||++|.. .+||+|..+.
T Consensus       207 ~sQ~EGCVVDDe~g~LYvgEE~-~GIW~y~Aep  238 (381)
T PF02333_consen  207 GSQPEGCVVDDETGRLYVGEED-VGIWRYDAEP  238 (381)
T ss_dssp             SS-EEEEEEETTTTEEEEEETT-TEEEEEESSC
T ss_pred             CCcceEEEEecccCCEEEecCc-cEEEEEecCC
Confidence            3568899999988899999975 6999999764

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=96.60  E-value=0.37  Score=40.84  Aligned_cols=128  Identities=18%  Similarity=0.150  Sum_probs=74.6

Q ss_pred             CCCCEEEEeCCCcEEEEcC-CC-eEEEcCC-cCCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCC
Q 018474          103 KDGGVILCDNEKGLLKVTE-EG-VEAIVPD-ASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPK  178 (355)
Q Consensus       103 ~~g~L~v~~~~~gl~~~~~-~g-~~~~~~~-~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~  178 (355)
                      ..+.-|.+.  ..|++++. +. ...+... ...+.+++.+|+|+ +.+....                ....+..||.+
T Consensus        30 ~~~ks~~~~--~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~----------------~~~~v~lyd~~   91 (194)
T PF08662_consen   30 KSGKSYYGE--FELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGS----------------MPAKVTLYDVK   91 (194)
T ss_pred             cCcceEEee--EEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEcc----------------CCcccEEEcCc
Confidence            444444433  25777763 33 4443222 13489999999985 4444221                12256677776


Q ss_pred             CCeEEEeeccccccccEEEeCCCCEEEEEeCC--CCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474          179 LKETTVLHEGFYFANGIALSKNEDFVVVCESW--KFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       179 ~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      ...+..+.  -...|.+.++|+|+.+.++..+  .+.|..|+.+.     .+.+..........+..+++|++.++...
T Consensus        92 ~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~-----~~~i~~~~~~~~t~~~WsPdGr~~~ta~t  163 (194)
T PF08662_consen   92 GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK-----KKKISTFEHSDATDVEWSPDGRYLATATT  163 (194)
T ss_pred             ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC-----CEEeeccccCcEEEEEEcCCCCEEEEEEe
Confidence            44444332  2346789999999988887644  34678888752     11121111122456788999998887654

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.59  E-value=0.49  Score=42.14  Aligned_cols=195  Identities=16%  Similarity=0.133  Sum_probs=109.4

Q ss_pred             CcccCeEECCCCC-EEEEeCC-CcEEEEcCCC--eEEEcCC-cCCcccEEEccCCcEEEEeCCCCCCCccccccccccCC
Q 018474           94 QSLLGLTTTKDGG-VILCDNE-KGLLKVTEEG--VEAIVPD-ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKP  168 (355)
Q Consensus        94 ~p~~gl~~d~~g~-L~v~~~~-~gl~~~~~~g--~~~~~~~-~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~  168 (355)
                      ... ++.++++.+ ||..... -.++.++++|  +.+++-. ...|..+..-.+|++-+++..               ..
T Consensus        87 nvS-~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER---------------~~  150 (316)
T COG3204          87 NVS-SLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDER---------------DR  150 (316)
T ss_pred             ccc-ceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehh---------------cc
Confidence            355 899998776 5555433 3488888888  6666543 367777877777777777654               11


Q ss_pred             CCeEEEEeCCCCeEEEee---------ccccccccEEEeCCCCEEEEEeCC-CCeEEEEEeCCCCCcce---------eE
Q 018474          169 YGQLRKYDPKLKETTVLH---------EGFYFANGIALSKNEDFVVVCESW-KFRCRRYWLKGDRAGIL---------DA  229 (355)
Q Consensus       169 ~g~l~~~dp~~~~~~~~~---------~~~~~pngi~~~~dg~~l~v~~~~-~~~i~~~~~~~~~~~~~---------~~  229 (355)
                      .-.++++|+++.....-.         ..-..-.|+|.+++.+.+|++-.. --+|+.++.......-.         +.
T Consensus       151 ~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~  230 (316)
T COG3204         151 ALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDL  230 (316)
T ss_pred             eEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccce
Confidence            223445566544322110         012234689999999988888643 33455444211111000         01


Q ss_pred             ecccCCCCcCceEECC-CCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEE
Q 018474          230 FIENLPGGPDNINLAP-DGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRD  308 (355)
Q Consensus       230 ~~~~~~g~p~~i~~d~-~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~  308 (355)
                      |...    -.++.+|+ .|+++|=...                                    ...++++|. +|+.+..
T Consensus       231 f~~D----vSgl~~~~~~~~LLVLS~E------------------------------------Sr~l~Evd~-~G~~~~~  269 (316)
T COG3204         231 FVLD----VSGLEFNAITNSLLVLSDE------------------------------------SRRLLEVDL-SGEVIEL  269 (316)
T ss_pred             Eeec----cccceecCCCCcEEEEecC------------------------------------CceEEEEec-CCCeeee
Confidence            1111    13345553 3456665443                                    247999999 9987666


Q ss_pred             EECCCC---C--cccceeEEEEe-CCEEEEeecCCCeEEEeeCC
Q 018474          309 FNDPDA---T--YISFVTSAAEF-DGNLYLASLQSNFIGILPLD  346 (355)
Q Consensus       309 ~~~~~g---~--~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~~~  346 (355)
                      .....|   +  ..+..-+++.+ +|.|||.+= .|..+|+--.
T Consensus       270 lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSE-Pnlfy~F~~~  312 (316)
T COG3204         270 LSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSE-PNLFYRFTPQ  312 (316)
T ss_pred             EEeccCCCCCcccCCCcceeEECCCCCEEEEec-CCcceecccC
Confidence            544333   2  22344466654 599999885 6666666443

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.55  E-value=0.36  Score=48.12  Aligned_cols=179  Identities=16%  Similarity=0.168  Sum_probs=95.6

Q ss_pred             ceEEEeeCCCeEEEE-ecC------CEEEEEEcCCCeeEEeeccCC-C-cccCeEECCCCCEEEEeCCCc------EEEE
Q 018474           55 EDVSVVVSKGALYTA-TRD------GWVKYFILHNETLVNWKHIDS-Q-SLLGLTTTKDGGVILCDNEKG------LLKV  119 (355)
Q Consensus        55 ~~i~~d~~~g~l~~~-~~~------g~i~~~~~~~g~~~~~~~~~~-~-p~~gl~~d~~g~L~v~~~~~g------l~~~  119 (355)
                      .+++.-  ++.+|+. ..+      ..+.++|+.+++|...+.... + -. +++. -+|.||+.....|      +-+|
T Consensus       326 ~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~-~v~~-l~g~iYavGG~dg~~~l~svE~Y  401 (571)
T KOG4441|consen  326 VGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDF-GVAV-LDGKLYAVGGFDGEKSLNSVECY  401 (571)
T ss_pred             ccEEEE--CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccc-eeEE-ECCEEEEEeccccccccccEEEe
Confidence            444554  6678863 334      356899998888877644322 1 22 4443 3788998654332      6677


Q ss_pred             cC-CC-eEEEcCCcCCcccEE-EccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecccc--cccc
Q 018474          120 TE-EG-VEAIVPDASFTNDVI-AASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFY--FANG  194 (355)
Q Consensus       120 ~~-~g-~~~~~~~~~~~~~l~-~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~--~png  194 (355)
                      |+ +. .+..+.....-.+.. ..-+|.||+.......           ......+.+|||.+++++...+-..  .-.|
T Consensus       402 Dp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~-----------~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g  470 (571)
T KOG4441|consen  402 DPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGS-----------SNCLNSVECYDPETNTWTLIAPMNTRRSGFG  470 (571)
T ss_pred             cCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCC-----------ccccceEEEEcCCCCceeecCCcccccccce
Confidence            75 33 444443222122222 3347899987543100           0023478999999999987754322  2234


Q ss_pred             EEEeCCCCEEEEEeCCC-----CeEEEEEeCCCCCcceeEecccC-CCCcCceEECCCCCEEEEee
Q 018474          195 IALSKNEDFVVVCESWK-----FRCRRYWLKGDRAGILDAFIENL-PGGPDNINLAPDGSFWIGLI  254 (355)
Q Consensus       195 i~~~~dg~~l~v~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~-~g~p~~i~~d~~G~lwv~~~  254 (355)
                      ++.. ++ .+|+..-..     ..+.+|++..   .+........ +...-+++.. +|.+|+.-.
T Consensus       471 ~a~~-~~-~iYvvGG~~~~~~~~~VE~ydp~~---~~W~~v~~m~~~rs~~g~~~~-~~~ly~vGG  530 (571)
T KOG4441|consen  471 VAVL-NG-KIYVVGGFDGTSALSSVERYDPET---NQWTMVAPMTSPRSAVGVVVL-GGKLYAVGG  530 (571)
T ss_pred             EEEE-CC-EEEEECCccCCCccceEEEEcCCC---CceeEcccCccccccccEEEE-CCEEEEEec
Confidence            4443 33 588876432     2377788743   3333332111 1112234443 456776554

>COG3211 PhoX Predicted phosphatase [General function prediction only]

Probab=96.54  E-value=0.027  Score=54.14  Aligned_cols=114  Identities=21%  Similarity=0.189  Sum_probs=71.3

Q ss_pred             ccccEEEeCCCCEEEEEeCCCC----------------eEEEEEeCCC----CCcceeEeccc-CC---C----------
Q 018474          191 FANGIALSKNEDFVVVCESWKF----------------RCRRYWLKGD----RAGILDAFIEN-LP---G----------  236 (355)
Q Consensus       191 ~pngi~~~~dg~~l~v~~~~~~----------------~i~~~~~~~~----~~~~~~~~~~~-~~---g----------  236 (355)
                      .|.+|++.|....+|++-|..+                .|+||-..+.    ...+.+.|+.. .+   .          
T Consensus       418 RpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~~~~~  497 (616)
T COG3211         418 RPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASANINAN  497 (616)
T ss_pred             CccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccCcccc
Confidence            4678999998888999987644                5788876442    12345555531 11   1          


Q ss_pred             ---CcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEE---eCCCCeEEEEEE
Q 018474          237 ---GPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKV---DGNDGKIIRDFN  310 (355)
Q Consensus       237 ---~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~g~~~~~~~  310 (355)
                         .|||+.+|+.|+|||.+-+..+..-.+                            ..|+..+   +++.|++.+.++
T Consensus       498 ~f~~PDnl~fD~~GrLWi~TDg~~s~~~~~----------------------------~~G~~~m~~~~p~~g~~~rf~t  549 (616)
T COG3211         498 WFNSPDNLAFDPWGRLWIQTDGSGSTLRNR----------------------------FRGVTQMLTPDPKTGTIKRFLT  549 (616)
T ss_pred             cccCCCceEECCCCCEEEEecCCCCccCcc----------------------------cccccccccCCCccceeeeecc
Confidence               299999999999999997743221110                            1123323   555667777777


Q ss_pred             CCCCCcccceeEEEEe--CCEEEEeec
Q 018474          311 DPDATYISFVTSAAEF--DGNLYLASL  335 (355)
Q Consensus       311 ~~~g~~~~~~~~~~~~--~g~L~v~~~  335 (355)
                      .|.|.   .+++.++.  +..|||+-.
T Consensus       550 ~P~g~---E~tG~~FspD~~TlFV~vQ  573 (616)
T COG3211         550 GPIGC---EFTGPCFSPDGKTLFVNVQ  573 (616)
T ss_pred             CCCcc---eeecceeCCCCceEEEEec
Confidence            77764   45566654  356777643

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=96.54  E-value=0.6  Score=42.54  Aligned_cols=235  Identities=14%  Similarity=0.092  Sum_probs=121.3

Q ss_pred             CCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCCcEE-EEc-CCC--eE
Q 018474           50 CVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLL-KVT-EEG--VE  125 (355)
Q Consensus        50 ~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~-~~~-~~g--~~  125 (355)
                      ....-+.+.++|....|..|+.+|.++.+...++...+.....+.+.+.=.+-++|...++....|.+ ..+ ++|  ..
T Consensus       147 e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~  226 (399)
T KOG0296|consen  147 EVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLH  226 (399)
T ss_pred             ccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeE
Confidence            45778899999878888889999999999876644433333323332122344677655544445644 445 477  44


Q ss_pred             EEcCCc-CCcccEEEcc----------CCcEEEEeCCCCCCCccccccccccCCCCeEE-EEeCCCCeEEEeeccc-ccc
Q 018474          126 AIVPDA-SFTNDVIAAS----------DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLR-KYDPKLKETTVLHEGF-YFA  192 (355)
Q Consensus       126 ~~~~~~-~~~~~l~~d~----------dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~-~~dp~~~~~~~~~~~~-~~p  192 (355)
                      .+.... .....+.+..          ++.+++.+..                 .|.+. +.++..-....-.+.. ..-
T Consensus       227 ~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~-----------------sgKVv~~~n~~~~~l~~~~e~~~esv  289 (399)
T KOG0296|consen  227 KITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNG-----------------SGKVVNCNNGTVPELKPSQEELDESV  289 (399)
T ss_pred             EecccccCcCCccccccccceeEeccCCccEEEEccc-----------------cceEEEecCCCCccccccchhhhhhh
Confidence            443111 1111222222          3344443322                 23332 2232111111000000 001


Q ss_pred             ccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHH
Q 018474          193 NGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWE  272 (355)
Q Consensus       193 ngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~  272 (355)
                      ..+.++.+=. |..+....++|..||....   +.+...+...+ ...+...+.-.++.++..                 
T Consensus       290 e~~~~ss~lp-L~A~G~vdG~i~iyD~a~~---~~R~~c~he~~-V~~l~w~~t~~l~t~c~~-----------------  347 (399)
T KOG0296|consen  290 ESIPSSSKLP-LAACGSVDGTIAIYDLAAS---TLRHICEHEDG-VTKLKWLNTDYLLTACAN-----------------  347 (399)
T ss_pred             hhcccccccc-hhhcccccceEEEEecccc---hhheeccCCCc-eEEEEEcCcchheeeccC-----------------
Confidence            1122333322 5566666788888987532   22323322111 112334444445655544                 


Q ss_pred             HHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeCCEEEEeecCCCeEEEeeCC
Q 018474          273 LLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLD  346 (355)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~  346 (355)
                                          +-|..+|.-.|+....|+.+.-.   ....++..++++.++....+...+|+.+
T Consensus       348 --------------------g~v~~wDaRtG~l~~~y~GH~~~---Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  348 --------------------GKVRQWDARTGQLKFTYTGHQMG---ILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             --------------------ceEEeeeccccceEEEEecCchh---eeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence                                45788887689988899876532   2223344568888888878887777754

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=96.50  E-value=0.55  Score=41.63  Aligned_cols=186  Identities=12%  Similarity=0.147  Sum_probs=107.5

Q ss_pred             EecCCCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEE-eeccCCCcccCeEECCCCCEEEEeCCCc---EEEEc
Q 018474           45 KLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVN-WKHIDSQSLLGLTTTKDGGVILCDNEKG---LLKVT  120 (355)
Q Consensus        45 ~~~~~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~-~~~~~~~p~~gl~~d~~g~L~v~~~~~g---l~~~~  120 (355)
                      ++.-|....--++-+.++.+++..++.||++..+|.-+..-.+ +.......- .-++.|.|++..+...+.   +|.+.
T Consensus        49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVM-tCA~sPSg~~VAcGGLdN~Csiy~ls  127 (343)
T KOG0286|consen   49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVM-TCAYSPSGNFVACGGLDNKCSIYPLS  127 (343)
T ss_pred             EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEE-EEEECCCCCeEEecCcCceeEEEecc
Confidence            5556777777888898777888889999999999975543222 222222333 567788998877654332   55554


Q ss_pred             -C--CC-e---EEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecc-cccc
Q 018474          121 -E--EG-V---EAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG-FYFA  192 (355)
Q Consensus       121 -~--~g-~---~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~-~~~p  192 (355)
                       +  +| +   +.+.....+....-+-+|+.|.-+ ++                 ...-..||-++++......+ ..--
T Consensus       128 ~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~-SG-----------------D~TCalWDie~g~~~~~f~GH~gDV  189 (343)
T KOG0286|consen  128 TRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTG-SG-----------------DMTCALWDIETGQQTQVFHGHTGDV  189 (343)
T ss_pred             cccccccceeeeeecCccceeEEEEEcCCCceEec-CC-----------------CceEEEEEcccceEEEEecCCcccE
Confidence             3  44 2   223333355666655556655432 22                 23455677767755443333 2223


Q ss_pred             ccEEEeC-CCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEe
Q 018474          193 NGIALSK-NEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGL  253 (355)
Q Consensus       193 ngi~~~~-dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~  253 (355)
                      -++.++| +++ .|++..-...-..+|+...  .-.+.|.. ..+-.+.+.+=++|.=+++.
T Consensus       190 ~slsl~p~~~n-tFvSg~cD~~aklWD~R~~--~c~qtF~g-hesDINsv~ffP~G~afatG  247 (343)
T KOG0286|consen  190 MSLSLSPSDGN-TFVSGGCDKSAKLWDVRSG--QCVQTFEG-HESDINSVRFFPSGDAFATG  247 (343)
T ss_pred             EEEecCCCCCC-eEEecccccceeeeeccCc--ceeEeecc-cccccceEEEccCCCeeeec
Confidence            4577888 777 7777765555666776433  23444542 22223445666777544443

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=96.42  E-value=0.16  Score=50.20  Aligned_cols=151  Identities=13%  Similarity=0.164  Sum_probs=92.7

Q ss_pred             CCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeecc--CCCcccCeEECCCCCEEEEeCCCcEEEEc--CCC--eE
Q 018474           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI--DSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG--VE  125 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~--~~~p~~gl~~d~~g~L~v~~~~~gl~~~~--~~g--~~  125 (355)
                      ..-.++++.+++..|+.+...+-+..++..+|+..+....  ..... .|++|+.|.|.......+.+++-  ..+  .+
T Consensus        63 d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi-~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th  141 (775)
T KOG0319|consen   63 DEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVI-TMAFDPTGTLLATGGADGRVKVWDIKNGYCTH  141 (775)
T ss_pred             hhhheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeE-EEEEcCCCceEEeccccceEEEEEeeCCEEEE
Confidence            4456778887788888888888777888888865433222  23345 79999998665544445666654  355  55


Q ss_pred             EEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeE--EEeeccccccccEEEeCCCCE
Q 018474          126 AIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKET--TVLHEGFYFANGIALSKNEDF  203 (355)
Q Consensus       126 ~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~--~~~~~~~~~pngi~~~~dg~~  203 (355)
                      .+......+..+.+.++-+.|+-               ..+...+.+..||..++..  ..+....+.-.++++.+|+..
T Consensus       142 ~fkG~gGvVssl~F~~~~~~~lL---------------~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~  206 (775)
T KOG0319|consen  142 SFKGHGGVVSSLLFHPHWNRWLL---------------ASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLE  206 (775)
T ss_pred             EecCCCceEEEEEeCCccchhhe---------------eecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCce
Confidence            56554456777777776433321               1223466788888765433  111223344568899999874


Q ss_pred             EEEEeCCCCeEEEEEe
Q 018474          204 VVVCESWKFRCRRYWL  219 (355)
Q Consensus       204 l~v~~~~~~~i~~~~~  219 (355)
                      ++-. ....-+..|++
T Consensus       207 ~ls~-~RDkvi~vwd~  221 (775)
T KOG0319|consen  207 LLSV-GRDKVIIVWDL  221 (775)
T ss_pred             EEEe-ccCcEEEEeeh
Confidence            4443 33455666666

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=96.40  E-value=0.13  Score=48.81  Aligned_cols=185  Identities=13%  Similarity=0.111  Sum_probs=100.5

Q ss_pred             CCCCceEEEeeCCCeEEEEecCCEEEEEEcCCC------eeEEeecc-CCCcccCeEECCCCCEEEEeCCCc-EEEEcCC
Q 018474           51 VNHPEDVSVVVSKGALYTATRDGWVKYFILHNE------TLVNWKHI-DSQSLLGLTTTKDGGVILCDNEKG-LLKVTEE  122 (355)
Q Consensus        51 ~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g------~~~~~~~~-~~~p~~gl~~d~~g~L~v~~~~~g-l~~~~~~  122 (355)
                      -+.-.++++|+.+-+++.|+.+-.|..+|. .|      .++.+... +..+. .+.+...|..+++-.+.. ...+|.+
T Consensus       167 tk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf-~gMdas~~~fr~l~P~E~h~i~-sl~ys~Tg~~iLvvsg~aqakl~DRd  244 (641)
T KOG0772|consen  167 TKIVSALAVDPSGARFVSGSLDYTVKFWDF-QGMDASMRSFRQLQPCETHQIN-SLQYSVTGDQILVVSGSAQAKLLDRD  244 (641)
T ss_pred             ceEEEEeeecCCCceeeeccccceEEEEec-ccccccchhhhccCcccccccc-eeeecCCCCeEEEEecCcceeEEccC
Confidence            344567889988888999998888888886 33      12222222 23455 777777776444433433 3444566


Q ss_pred             C--eEEEcCCc-------------CCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCe--EEEEeCCCCeEEE
Q 018474          123 G--VEAIVPDA-------------SFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQ--LRKYDPKLKETTV  184 (355)
Q Consensus       123 g--~~~~~~~~-------------~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~--l~~~dp~~~~~~~  184 (355)
                      |  +.......             ..+++.+..|+. ..++|.+.                 .|.  +|-.+....+.++
T Consensus       245 G~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~-----------------DgtlRiWdv~~~k~q~qV  307 (641)
T KOG0772|consen  245 GFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSY-----------------DGTLRIWDVNNTKSQLQV  307 (641)
T ss_pred             CceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecC-----------------CCcEEEEecCCchhheeE
Confidence            7  22222211             223333444443 34444332                 333  4433332234445


Q ss_pred             eeccc----c-ccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEec-c-cCCC-CcCceEECCCCCEEEEeecC
Q 018474          185 LHEGF----Y-FANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFI-E-NLPG-GPDNINLAPDGSFWIGLIKM  256 (355)
Q Consensus       185 ~~~~~----~-~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~-~-~~~g-~p~~i~~d~~G~lwv~~~~~  256 (355)
                      +.+..    . .+...++++||+ ++.+....+.|..|+. +.........+ + ..+| -...+.++.+|+++.+....
T Consensus       308 ik~k~~~g~Rv~~tsC~~nrdg~-~iAagc~DGSIQ~W~~-~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D  385 (641)
T KOG0772|consen  308 IKTKPAGGKRVPVTSCAWNRDGK-LIAAGCLDGSIQIWDK-GSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFD  385 (641)
T ss_pred             EeeccCCCcccCceeeecCCCcc-hhhhcccCCceeeeec-CCcccccceEeeeccCCCCceeEEEeccccchhhhccCC
Confidence            43322    1 245678999998 5777777888888876 32222222121 1 2332 23457889999988876553

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=96.40  E-value=0.91  Score=43.03  Aligned_cols=136  Identities=10%  Similarity=0.019  Sum_probs=69.3

Q ss_pred             eEECCCCCEEEEeCCCcEEEEcCCC--e-EEEcCCc-CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEE
Q 018474           99 LTTTKDGGVILCDNEKGLLKVTEEG--V-EAIVPDA-SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRK  174 (355)
Q Consensus        99 l~~d~~g~L~v~~~~~gl~~~~~~g--~-~~~~~~~-~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~  174 (355)
                      +...++|.+++....+.+++-...|  . +.+.... ....++.+.++|.+|+....                  |.+++
T Consensus       244 v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~------------------G~l~~  305 (398)
T PLN00033        244 VNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRG------------------GGLYV  305 (398)
T ss_pred             EEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCC------------------ceEEE
Confidence            4555777777776554455554444  2 3333222 56677888888988887532                  44544


Q ss_pred             EeCCCC-----eEEEeec--cccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCC
Q 018474          175 YDPKLK-----ETTVLHE--GFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDG  247 (355)
Q Consensus       175 ~dp~~~-----~~~~~~~--~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G  247 (355)
                      -+....     ++.....  .......+.+..|+. +|++..  +++.....++.+.-+.....+..+.--.++.+.+++
T Consensus       306 S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~-~~a~G~--~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~  382 (398)
T PLN00033        306 SKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKE-AWAAGG--SGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDK  382 (398)
T ss_pred             ecCCCCcccccceeecccCCCCcceEEEEEcCCCc-EEEEEC--CCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCC
Confidence            332222     2222211  112245567777766 666643  445444454443322211111221112345666678


Q ss_pred             CEEEEeec
Q 018474          248 SFWIGLIK  255 (355)
Q Consensus       248 ~lwv~~~~  255 (355)
                      +.|+.-..
T Consensus       383 ~g~~~G~~  390 (398)
T PLN00033        383 KGFVLGND  390 (398)
T ss_pred             ceEEEeCC
Confidence            88887654

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=96.39  E-value=0.39  Score=47.54  Aligned_cols=93  Identities=12%  Similarity=0.017  Sum_probs=53.0

Q ss_pred             eEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeecc-CCCcccCeEECCCCCE---EEEeCCCcEEEEcC-CC---eEEE
Q 018474           56 DVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI-DSQSLLGLTTTKDGGV---ILCDNEKGLLKVTE-EG---VEAI  127 (355)
Q Consensus        56 ~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~-~~~p~~gl~~d~~g~L---~v~~~~~gl~~~~~-~g---~~~~  127 (355)
                      -+++++.++.+-.+..+|.+..+|.+.+...+.... ++... .+.+.++-+.   +.+....-+..++- ++   +..+
T Consensus       110 ~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVs-sl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~  188 (775)
T KOG0319|consen  110 TMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVS-SLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTM  188 (775)
T ss_pred             EEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEE-EEEeCCccchhheeecCCCceEEEEEcccCchHHHHH
Confidence            466775555555667799999999877766554443 44455 6777655432   33333323444442 23   2222


Q ss_pred             cCCcCCcccEEEccCCcEEEEe
Q 018474          128 VPDASFTNDVIAASDGTLYFTV  149 (355)
Q Consensus       128 ~~~~~~~~~l~~d~dG~ly~~d  149 (355)
                      ......+.++++.+|+.-.++.
T Consensus       189 ~~H~S~vtsL~~~~d~~~~ls~  210 (775)
T KOG0319|consen  189 ILHKSAVTSLAFSEDSLELLSV  210 (775)
T ss_pred             HhhhhheeeeeeccCCceEEEe
Confidence            2222678888888887555543

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=96.27  E-value=0.0096  Score=33.18  Aligned_cols=20  Identities=25%  Similarity=0.562  Sum_probs=17.1

Q ss_pred             CCcccEEEccCCcEEEEeCC
Q 018474          132 SFTNDVIAASDGTLYFTVAS  151 (355)
Q Consensus       132 ~~~~~l~~d~dG~ly~~d~~  151 (355)
                      ..|.+++++++|+||++|..
T Consensus         2 ~~P~gvav~~~g~i~VaD~~   21 (28)
T PF01436_consen    2 NYPHGVAVDSDGNIYVADSG   21 (28)
T ss_dssp             SSEEEEEEETTSEEEEEECC
T ss_pred             cCCcEEEEeCCCCEEEEECC
Confidence            46889999999999999865

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=96.23  E-value=0.49  Score=42.53  Aligned_cols=141  Identities=7%  Similarity=-0.016  Sum_probs=77.4

Q ss_pred             CeEEEE-ecCCEEEEEEcCCCeeEEeec------cCCCcccCeEECCCCCEEEEeCCCcEEEEc--CCC--eEEEcC---
Q 018474           64 GALYTA-TRDGWVKYFILHNETLVNWKH------IDSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG--VEAIVP---  129 (355)
Q Consensus        64 g~l~~~-~~~g~i~~~~~~~g~~~~~~~------~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~--~~g--~~~~~~---  129 (355)
                      ..+|.. +.+.-|..+|.-+|+.+--..      .-...+ ++.+.+||.-.+|...+-|-.++  ..|  ...++.   
T Consensus       123 t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAh-sL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~  201 (406)
T KOG2919|consen  123 TNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAH-SLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTK  201 (406)
T ss_pred             cceeeeccccCceeeeeccccccccchhhhhhHHhhhhhe-eEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhc
Confidence            344443 346678888888887542111      011256 88999999866665555555555  355  222221   


Q ss_pred             -Cc---CCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEE
Q 018474          130 -DA---SFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFV  204 (355)
Q Consensus       130 -~~---~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l  204 (355)
                       +.   .-+..+++.|.. ..+...+-               ...-+||+.+-. +-...+........-+++.+||+.+
T Consensus       202 ~k~gq~giisc~a~sP~~~~~~a~gsY---------------~q~~giy~~~~~-~pl~llggh~gGvThL~~~edGn~l  265 (406)
T KOG2919|consen  202 GKFGQKGIISCFAFSPMDSKTLAVGSY---------------GQRVGIYNDDGR-RPLQLLGGHGGGVTHLQWCEDGNKL  265 (406)
T ss_pred             ccccccceeeeeeccCCCCcceeeecc---------------cceeeeEecCCC-CceeeecccCCCeeeEEeccCcCee
Confidence             11   334455666643 23322211               012246655521 1222222222223446789999999


Q ss_pred             EEEeCCCCeEEEEEeCC
Q 018474          205 VVCESWKFRCRRYWLKG  221 (355)
Q Consensus       205 ~v~~~~~~~i~~~~~~~  221 (355)
                      |........|.++|++.
T Consensus       266 fsGaRk~dkIl~WDiR~  282 (406)
T KOG2919|consen  266 FSGARKDDKILCWDIRY  282 (406)
T ss_pred             cccccCCCeEEEEeehh
Confidence            99988888999999854

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=96.22  E-value=0.11  Score=51.75  Aligned_cols=149  Identities=14%  Similarity=0.207  Sum_probs=93.1

Q ss_pred             CCCceEEEeeCCCeEEE-EecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCE-EEEeCCCcEEEE-cCCC--eEE
Q 018474           52 NHPEDVSVVVSKGALYT-ATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGV-ILCDNEKGLLKV-TEEG--VEA  126 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~-~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L-~v~~~~~gl~~~-~~~g--~~~  126 (355)
                      ..-+|+++.|.+++.|+ |+-||++..++..+.++..|.....-+. .+++-++|.. .|++.. |..++ +..+  ++.
T Consensus       410 dfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lIT-Avcy~PdGk~avIGt~~-G~C~fY~t~~lk~~~  487 (712)
T KOG0283|consen  410 DFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLIT-AVCYSPDGKGAVIGTFN-GYCRFYDTEGLKLVS  487 (712)
T ss_pred             CeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhhe-eEEeccCCceEEEEEec-cEEEEEEccCCeEEE
Confidence            34578889987777665 6679999999998888888876655566 8999999985 556644 55444 4444  211


Q ss_pred             ---EcCC-c-----CCcccEEEccCC--cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecccc---cc
Q 018474          127 ---IVPD-A-----SFTNDVIAASDG--TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFY---FA  192 (355)
Q Consensus       127 ---~~~~-~-----~~~~~l~~d~dG--~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~---~p  192 (355)
                         +... .     ..+.++.+.+..  .|.||...                  -+|-.||..+.++.....+..   ..
T Consensus       488 ~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnD------------------SrIRI~d~~~~~lv~KfKG~~n~~SQ  549 (712)
T KOG0283|consen  488 DFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSND------------------SRIRIYDGRDKDLVHKFKGFRNTSSQ  549 (712)
T ss_pred             eeeEeeccCccccCceeeeeEecCCCCCeEEEecCC------------------CceEEEeccchhhhhhhcccccCCcc
Confidence               1111 0     346667666422  57776543                  356667754444332222222   22


Q ss_pred             ccEEEeCCCCEEEEEeCCCCeEEEEEeCC
Q 018474          193 NGIALSKNEDFVVVCESWKFRCRRYWLKG  221 (355)
Q Consensus       193 ngi~~~~dg~~l~v~~~~~~~i~~~~~~~  221 (355)
                      .-..|+.||++++.+. ..+.|+.|..+.
T Consensus       550 ~~Asfs~Dgk~IVs~s-eDs~VYiW~~~~  577 (712)
T KOG0283|consen  550 ISASFSSDGKHIVSAS-EDSWVYIWKNDS  577 (712)
T ss_pred             eeeeEccCCCEEEEee-cCceEEEEeCCC
Confidence            3356889999766654 678888888643

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=96.21  E-value=0.15  Score=45.48  Aligned_cols=135  Identities=14%  Similarity=0.214  Sum_probs=77.6

Q ss_pred             CeEECCCCCEEEEeCCC-cEEEEcCCC---------------------eEEEcCCcCCcccEEEccCCcEEEEeCCCCCC
Q 018474           98 GLTTTKDGGVILCDNEK-GLLKVTEEG---------------------VEAIVPDASFTNDVIAASDGTLYFTVASTKYT  155 (355)
Q Consensus        98 gl~~d~~g~L~v~~~~~-gl~~~~~~g---------------------~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~  155 (355)
                      .-++.+||.|+.+...+ .|-.++-+.                     ++++.+....+|++.+.|...|.++.+.    
T Consensus       117 ~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~sr----  192 (430)
T KOG0640|consen  117 AAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSR----  192 (430)
T ss_pred             eeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccC----
Confidence            56788899887755433 233333110                     1112222267888999998888887554    


Q ss_pred             CccccccccccCCCCeEEEEeCCCCe----EEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEec
Q 018474          156 PTDFYKDMAEGKPYGQLRKYDPKLKE----TTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFI  231 (355)
Q Consensus       156 ~~~~~~~~~~~~~~g~l~~~dp~~~~----~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~  231 (355)
                                   .+.+-.||-..-.    +++ .+....-..|.++|.|.++.+. +....+..|+++     +++.|+
T Consensus       193 -------------D~tvKlFDfsK~saKrA~K~-~qd~~~vrsiSfHPsGefllvg-TdHp~~rlYdv~-----T~Qcfv  252 (430)
T KOG0640|consen  193 -------------DNTVKLFDFSKTSAKRAFKV-FQDTEPVRSISFHPSGEFLLVG-TDHPTLRLYDVN-----TYQCFV  252 (430)
T ss_pred             -------------CCeEEEEecccHHHHHHHHH-hhccceeeeEeecCCCceEEEe-cCCCceeEEecc-----ceeEee
Confidence                         3334334421111    111 2222334578899999977665 567788889974     345555


Q ss_pred             ccCC-----CCcCceEECCCCCEEEEeecC
Q 018474          232 ENLP-----GGPDNINLAPDGSFWIGLIKM  256 (355)
Q Consensus       232 ~~~~-----g~p~~i~~d~~G~lwv~~~~~  256 (355)
                      ...|     +....+..++.|++||.....
T Consensus       253 sanPd~qht~ai~~V~Ys~t~~lYvTaSkD  282 (430)
T KOG0640|consen  253 SANPDDQHTGAITQVRYSSTGSLYVTASKD  282 (430)
T ss_pred             ecCcccccccceeEEEecCCccEEEEeccC
Confidence            4333     112224578889999987653

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=96.14  E-value=0.66  Score=43.54  Aligned_cols=148  Identities=17%  Similarity=0.131  Sum_probs=86.1

Q ss_pred             CCC-ceEEEeeCCCeEEE-EecCCEEEEEEcCCCeeEEeeccCC-CcccCeEECCCCCEEEEeCCCcEEEEc-C------
Q 018474           52 NHP-EDVSVVVSKGALYT-ATRDGWVKYFILHNETLVNWKHIDS-QSLLGLTTTKDGGVILCDNEKGLLKVT-E------  121 (355)
Q Consensus        52 ~~p-~~i~~d~~~g~l~~-~~~~g~i~~~~~~~g~~~~~~~~~~-~p~~gl~~d~~g~L~v~~~~~gl~~~~-~------  121 (355)
                      ++| .+++.+ +.|.+.+ ++..|.||.+...+|....+...-- .+. .|.+..||..+++...+|.+.+. -      
T Consensus        81 Pg~v~al~s~-n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~IT-cL~fs~dgs~iiTgskDg~V~vW~l~~lv~a  158 (476)
T KOG0646|consen   81 PGPVHALASS-NLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSIT-CLKFSDDGSHIITGSKDGAVLVWLLTDLVSA  158 (476)
T ss_pred             ccceeeeecC-CCceEEEeecccCcEEEEEeccccHHHHHHhhcccee-EEEEeCCCcEEEecCCCccEEEEEEEeeccc
Confidence            444 455666 4555554 5578999999999997654322111 244 88888899988887666633332 1      


Q ss_pred             --CC----eEEEcCCcCCcccEEEccCC---cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecccccc
Q 018474          122 --EG----VEAIVPDASFTNDVIAASDG---TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFA  192 (355)
Q Consensus       122 --~g----~~~~~~~~~~~~~l~~d~dG---~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~p  192 (355)
                        ++    +..+....-.+.|+.++.-|   +||-+.                  ....+-.||...+.+-.-..-...+
T Consensus       159 ~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS------------------~D~t~k~wdlS~g~LLlti~fp~si  220 (476)
T KOG0646|consen  159 DNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTAS------------------EDRTIKLWDLSLGVLLLTITFPSSI  220 (476)
T ss_pred             ccCCCccceeeeccCcceeEEEEecCCCccceEEEec------------------CCceEEEEEeccceeeEEEecCCcc
Confidence              11    11122222345555555433   233211                  1334566777667543322233456


Q ss_pred             ccEEEeCCCCEEEEEeCCCCeEEEEEeC
Q 018474          193 NGIALSKNEDFVVVCESWKFRCRRYWLK  220 (355)
Q Consensus       193 ngi~~~~dg~~l~v~~~~~~~i~~~~~~  220 (355)
                      +.++++|-++.+|+. +..+.|+...+.
T Consensus       221 ~av~lDpae~~~yiG-t~~G~I~~~~~~  247 (476)
T KOG0646|consen  221 KAVALDPAERVVYIG-TEEGKIFQNLLF  247 (476)
T ss_pred             eeEEEcccccEEEec-CCcceEEeeehh
Confidence            889999999877775 457889988763

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.08  E-value=1.1  Score=40.79  Aligned_cols=178  Identities=16%  Similarity=0.117  Sum_probs=80.5

Q ss_pred             CCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCC-----CcccCeEECCCCCEEEEeCCCcEEEEc-CCC--
Q 018474           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDS-----QSLLGLTTTKDGGVILCDNEKGLLKVT-EEG--  123 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~-----~p~~gl~~d~~g~L~v~~~~~gl~~~~-~~g--  123 (355)
                      ....+|.+. +.+.-|+....+.|++=.-....++.......     +-. .+.++ +...|++... +++... ..|  
T Consensus        17 ~~l~dV~F~-d~~~G~~VG~~g~il~T~DGG~tW~~~~~~~~~~~~~~l~-~I~f~-~~~g~ivG~~-g~ll~T~DgG~t   92 (302)
T PF14870_consen   17 KPLLDVAFV-DPNHGWAVGAYGTILKTTDGGKTWQPVSLDLDNPFDYHLN-SISFD-GNEGWIVGEP-GLLLHTTDGGKT   92 (302)
T ss_dssp             S-EEEEEES-SSS-EEEEETTTEEEEESSTTSS-EE-----S-----EEE-EEEEE-TTEEEEEEET-TEEEEESSTTSS
T ss_pred             CceEEEEEe-cCCEEEEEecCCEEEEECCCCccccccccCCCccceeeEE-EEEec-CCceEEEcCC-ceEEEecCCCCC
Confidence            456677777 56666665556766554321224554432211     123 45554 3456776433 554444 344  


Q ss_pred             eEEEcC--C-cCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecc-ccccccEEEeC
Q 018474          124 VEAIVP--D-ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG-FYFANGIALSK  199 (355)
Q Consensus       124 ~~~~~~--~-~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~-~~~pngi~~~~  199 (355)
                      -+.+..  . +..+..+....++.+++...                  .|.+|+-.-....++.+... ...-+.+..++
T Consensus        93 W~~v~l~~~lpgs~~~i~~l~~~~~~l~~~------------------~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~  154 (302)
T PF14870_consen   93 WERVPLSSKLPGSPFGITALGDGSAELAGD------------------RGAIYRTTDGGKTWQAVVSETSGSINDITRSS  154 (302)
T ss_dssp             -EE----TT-SS-EEEEEEEETTEEEEEET------------------T--EEEESSTTSSEEEEE-S----EEEEEE-T
T ss_pred             cEEeecCCCCCCCeeEEEEcCCCcEEEEcC------------------CCcEEEeCCCCCCeeEcccCCcceeEeEEECC
Confidence            444432  1 13445555545555555422                  35677665545566665433 22334566788


Q ss_pred             CCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474          200 NEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       200 dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      ||+.+.++  .++.+++-+-.|...  .+.+.........+|.++++|++|+.+.+
T Consensus       155 dG~~vavs--~~G~~~~s~~~G~~~--w~~~~r~~~~riq~~gf~~~~~lw~~~~G  206 (302)
T PF14870_consen  155 DGRYVAVS--SRGNFYSSWDPGQTT--WQPHNRNSSRRIQSMGFSPDGNLWMLARG  206 (302)
T ss_dssp             TS-EEEEE--TTSSEEEEE-TT-SS---EEEE--SSS-EEEEEE-TTS-EEEEETT
T ss_pred             CCcEEEEE--CcccEEEEecCCCcc--ceEEccCccceehhceecCCCCEEEEeCC
Confidence            99855554  445665544333221  22221122233466788999999998854

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=96.05  E-value=1.4  Score=43.55  Aligned_cols=168  Identities=16%  Similarity=0.099  Sum_probs=87.5

Q ss_pred             CCCeEEEEecCCEEEEEEcCCCeeEEeec-cCCCcccCeEECCCCCEEEEeCCCcEEEEcCCC--eEEEcCCcCCcccEE
Q 018474           62 SKGALYTATRDGWVKYFILHNETLVNWKH-IDSQSLLGLTTTKDGGVILCDNEKGLLKVTEEG--VEAIVPDASFTNDVI  138 (355)
Q Consensus        62 ~~g~l~~~~~~g~i~~~~~~~g~~~~~~~-~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~~g--~~~~~~~~~~~~~l~  138 (355)
                      +++++.++..|..|.++.+.+.....+.. ...... ++..+.++.|.-+.|. ...++.+.|  ...+......+-.++
T Consensus        70 ~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC-~ls~~~~~~~iSgSWD-~TakvW~~~~l~~~l~gH~asVWAv~  147 (745)
T KOG0301|consen   70 DKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVC-SLSIGEDGTLISGSWD-STAKVWRIGELVYSLQGHTASVWAVA  147 (745)
T ss_pred             cCcceEeecccceEEEEecCCCCchhhhhcccccee-eeecCCcCceEecccc-cceEEecchhhhcccCCcchheeeee
Confidence            56778888888888888875554433322 234577 8888888886656554 445554433  333333334455555


Q ss_pred             EccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEE
Q 018474          139 AASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYW  218 (355)
Q Consensus       139 ~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~  218 (355)
                      .-+++ .|+|.+.                 .-.+..|.. ....+++......-.|+++-++..++  +-...+-|..++
T Consensus       148 ~l~e~-~~vTgsa-----------------DKtIklWk~-~~~l~tf~gHtD~VRgL~vl~~~~fl--ScsNDg~Ir~w~  206 (745)
T KOG0301|consen  148 SLPEN-TYVTGSA-----------------DKTIKLWKG-GTLLKTFSGHTDCVRGLAVLDDSHFL--SCSNDGSIRLWD  206 (745)
T ss_pred             ecCCC-cEEeccC-----------------cceeeeccC-CchhhhhccchhheeeeEEecCCCeE--eecCCceEEEEe
Confidence            55666 6776544                 123333432 12223333223345677777776533  223445666666


Q ss_pred             eCCCCCcceeEecccCCCCcCceEECCCCCEEEEeecC
Q 018474          219 LKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKM  256 (355)
Q Consensus       219 ~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~  256 (355)
                      ++|..+.+.  +  +...+-..+...-.+.+.|++...
T Consensus       207 ~~ge~l~~~--~--ghtn~vYsis~~~~~~~Ivs~gED  240 (745)
T KOG0301|consen  207 LDGEVLLEM--H--GHTNFVYSISMALSDGLIVSTGED  240 (745)
T ss_pred             ccCceeeee--e--ccceEEEEEEecCCCCeEEEecCC
Confidence            655432111  1  111122223323345577887664

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=96.04  E-value=0.12  Score=48.51  Aligned_cols=138  Identities=10%  Similarity=0.153  Sum_probs=91.3

Q ss_pred             CeEECC-CCCEEEEeCCCcEE-EEc--CCC--eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCe
Q 018474           98 GLTTTK-DGGVILCDNEKGLL-KVT--EEG--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQ  171 (355)
Q Consensus        98 gl~~d~-~g~L~v~~~~~gl~-~~~--~~g--~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~  171 (355)
                      .+.+-+ .+.|+.....++.+ .++  .++  ++++.....-+.++.+.++|+-+++.+-                 ...
T Consensus       219 ai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sf-----------------D~~  281 (503)
T KOG0282|consen  219 AIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASF-----------------DRF  281 (503)
T ss_pred             hhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeec-----------------cee
Confidence            344444 67777766555533 333  234  5655544467888999999987777543                 345


Q ss_pred             EEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEE
Q 018474          172 LRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWI  251 (355)
Q Consensus       172 l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv  251 (355)
                      +-.||.+||+...-......|..+.+.||+..++++....++|..||+...++  .+.+...+.. ...+.+=++|+.+|
T Consensus       282 lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv--vqeYd~hLg~-i~~i~F~~~g~rFi  358 (503)
T KOG0282|consen  282 LKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV--VQEYDRHLGA-ILDITFVDEGRRFI  358 (503)
T ss_pred             eeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHH--HHHHHhhhhh-eeeeEEccCCceEe
Confidence            66789889987665556677999999999977889988899999999865432  1112222322 23355556788888


Q ss_pred             Eeec
Q 018474          252 GLIK  255 (355)
Q Consensus       252 ~~~~  255 (355)
                      ++..
T Consensus       359 ssSD  362 (503)
T KOG0282|consen  359 SSSD  362 (503)
T ss_pred             eecc
Confidence            7765

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=96.03  E-value=1.2  Score=40.77  Aligned_cols=147  Identities=13%  Similarity=0.137  Sum_probs=86.7

Q ss_pred             CCCcccCeEECCCCCEEEEeCCC--cEEEEcC-CC-eEEEc-CCcCCcccEEEccCCcEEEEeCCCCCCCcccccccccc
Q 018474           92 DSQSLLGLTTTKDGGVILCDNEK--GLLKVTE-EG-VEAIV-PDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEG  166 (355)
Q Consensus        92 ~~~p~~gl~~d~~g~L~v~~~~~--gl~~~~~-~g-~~~~~-~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~  166 (355)
                      +..|.+.|...+||..|+..+.+  .+...++ +| ...+. .......-+..+|||...|+.+-               
T Consensus       194 gh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~---------------  258 (445)
T KOG2139|consen  194 GHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATC---------------  258 (445)
T ss_pred             CCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecc---------------
Confidence            33444489999999988876542  3666664 56 44433 22345556789999976665432               


Q ss_pred             CCCCeEEEEeCCCCeEE--EeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCC--------CcceeEecccCC-
Q 018474          167 KPYGQLRKYDPKLKETT--VLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDR--------AGILDAFIENLP-  235 (355)
Q Consensus       167 ~~~g~l~~~dp~~~~~~--~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~--------~~~~~~~~~~~~-  235 (355)
                        .+....++. +..++  ....+...-.+.+.+|+|++|+++-.+.-+|++...++..        .......+| ++ 
T Consensus       259 --davfrlw~e-~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaD-L~e  334 (445)
T KOG2139|consen  259 --DAVFRLWQE-NQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIAD-LQE  334 (445)
T ss_pred             --cceeeeehh-cccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeecc-chh
Confidence              112222221 11111  1122223456778999999999999998899888765421        011111121 11 


Q ss_pred             -----------CCcCceEECCCCCEEEEeecCC
Q 018474          236 -----------GGPDNINLAPDGSFWIGLIKMN  257 (355)
Q Consensus       236 -----------g~p~~i~~d~~G~lwv~~~~~~  257 (355)
                                 |-+.-++.|+.|.+.+....+.
T Consensus       335 ~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~  367 (445)
T KOG2139|consen  335 VTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQ  367 (445)
T ss_pred             hhhhcCcccccCccceeeECCCCCEEEEEEcCC
Confidence                       2345588999999888887754

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=96.00  E-value=1.2  Score=40.63  Aligned_cols=150  Identities=16%  Similarity=0.168  Sum_probs=94.9

Q ss_pred             CCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeec-cCCCcccCeEECCCCCEEEEeCCCcEEEEc--CCC--
Q 018474           49 GCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH-IDSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG--  123 (355)
Q Consensus        49 ~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~-~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~--~~g--  123 (355)
                      |....-+++++.+.--++|.+..++.|..+|.++.++.+-.. .....+ ++.+.+.-++.++...+...|+-  .+.  
T Consensus       191 Ghi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~-~L~lhPTldvl~t~grDst~RvWDiRtr~~  269 (460)
T KOG0285|consen  191 GHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVY-CLDLHPTLDVLVTGGRDSTIRVWDIRTRAS  269 (460)
T ss_pred             chhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeE-EEeccccceeEEecCCcceEEEeeecccce
Confidence            556667888888666788889999999999998776543222 122355 66666766777766566677764  344  


Q ss_pred             eEEEcCCcCCcccEEEcc-CCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeE-EEeeccccccccEEEeCCC
Q 018474          124 VEAIVPDASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKET-TVLHEGFYFANGIALSKNE  201 (355)
Q Consensus       124 ~~~~~~~~~~~~~l~~d~-dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~-~~~~~~~~~pngi~~~~dg  201 (355)
                      +..+.....-+.++.+-+ |++++-+..                  .+.+..||...|+. ..+...-.....++++|+.
T Consensus       270 V~~l~GH~~~V~~V~~~~~dpqvit~S~------------------D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e  331 (460)
T KOG0285|consen  270 VHVLSGHTNPVASVMCQPTDPQVITGSH------------------DSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKE  331 (460)
T ss_pred             EEEecCCCCcceeEEeecCCCceEEecC------------------CceEEEeeeccCceeEeeecccceeeEEecCCch
Confidence            666665545566666554 667765533                  34566777765543 3333333345678889887


Q ss_pred             CEEEEEeCCCCeEEEEEe
Q 018474          202 DFVVVCESWKFRCRRYWL  219 (355)
Q Consensus       202 ~~l~v~~~~~~~i~~~~~  219 (355)
                      . ++.+ ...+.|-++.+
T Consensus       332 ~-~fAS-as~dnik~w~~  347 (460)
T KOG0285|consen  332 N-LFAS-ASPDNIKQWKL  347 (460)
T ss_pred             h-hhhc-cCCccceeccC
Confidence            5 4444 45667877776

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=95.97  E-value=1.1  Score=40.12  Aligned_cols=56  Identities=7%  Similarity=0.025  Sum_probs=37.2

Q ss_pred             cccCeEECCCCCE-EEEeCCCcEEEEc-CC-C-eEEEcCCcCCcccEEEccCCcEEEEeCC
Q 018474           95 SLLGLTTTKDGGV-ILCDNEKGLLKVT-EE-G-VEAIVPDASFTNDVIAASDGTLYFTVAS  151 (355)
Q Consensus        95 p~~gl~~d~~g~L-~v~~~~~gl~~~~-~~-g-~~~~~~~~~~~~~l~~d~dG~ly~~d~~  151 (355)
                      .. ++.+.+-|.+ -++...+.++.+| .+ + .+.+.....-+.+++.++||+..+|.+.
T Consensus        26 a~-~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~   85 (405)
T KOG1273|consen   26 AE-CCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSR   85 (405)
T ss_pred             cc-eEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecC
Confidence            44 6777777764 4455455677777 33 3 3444444456788999999999988665

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=95.92  E-value=0.5  Score=44.25  Aligned_cols=202  Identities=15%  Similarity=0.168  Sum_probs=107.7

Q ss_pred             CCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeE-EeeccCCCcccCeEEC-CCCCEEEEeCCCcEEEEcC--CC-eE
Q 018474           51 VNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLV-NWKHIDSQSLLGLTTT-KDGGVILCDNEKGLLKVTE--EG-VE  125 (355)
Q Consensus        51 ~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~-~~~~~~~~p~~gl~~d-~~g~L~v~~~~~gl~~~~~--~g-~~  125 (355)
                      ...--++++.+++..|..+..+..|..++..+.+-. .+....+.+. ++++- ...+||.+....++-.++-  -. ++
T Consensus       202 ~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~-~L~fr~gt~~lys~s~Drsvkvw~~~~~s~ve  280 (479)
T KOG0299|consen  202 VKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVS-SLAFRKGTSELYSASADRSVKVWSIDQLSYVE  280 (479)
T ss_pred             cceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhccccccccee-eeeeecCccceeeeecCCceEEEehhHhHHHH
Confidence            334456777755555555666777778887666433 2232234455 77763 3457898876665544442  22 33


Q ss_pred             EEcCCc---------CCcccEEEc-cCC--cEE-EEeCCC-CC-----CCcc----ccccccccCCCCeEEEEeCCCCeE
Q 018474          126 AIVPDA---------SFTNDVIAA-SDG--TLY-FTVAST-KY-----TPTD----FYKDMAEGKPYGQLRKYDPKLKET  182 (355)
Q Consensus       126 ~~~~~~---------~~~~~l~~d-~dG--~ly-~~d~~~-~~-----~~~~----~~~~~~~~~~~g~l~~~dp~~~~~  182 (355)
                      ++....         ..=..+++- .|.  ++| +.+.+. .|     .++.    ...+++.|...|.|+.|+..+++.
T Consensus       281 tlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkp  360 (479)
T KOG0299|consen  281 TLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKP  360 (479)
T ss_pred             HHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCc
Confidence            322221         111112222 122  233 111110 00     0011    112345667788888888765543


Q ss_pred             EEe---eccc-------c---ccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecc-cCCCCcCceEECCCCC
Q 018474          183 TVL---HEGF-------Y---FANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIE-NLPGGPDNINLAPDGS  248 (355)
Q Consensus       183 ~~~---~~~~-------~---~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~g~p~~i~~d~~G~  248 (355)
                      -..   +++.       .   .-+++++.+..+ |+.+.+..++|..+-++.+ ....+.+.+ .+.|+.+.+.+..+|+
T Consensus       361 lf~~~~AHgv~~~~~~~~~~~Witsla~i~~sd-L~asGS~~G~vrLW~i~~g-~r~i~~l~~ls~~GfVNsl~f~~sgk  438 (479)
T KOG0299|consen  361 LFTSRLAHGVIPELDPVNGNFWITSLAVIPGSD-LLASGSWSGCVRLWKIEDG-LRAINLLYSLSLVGFVNSLAFSNSGK  438 (479)
T ss_pred             eeEeeccccccCCccccccccceeeeEecccCc-eEEecCCCCceEEEEecCC-ccccceeeecccccEEEEEEEccCCC
Confidence            211   2221       1   346788888776 8888888777777666432 333444432 3567778888888997


Q ss_pred             -EEEEeec
Q 018474          249 -FWIGLIK  255 (355)
Q Consensus       249 -lwv~~~~  255 (355)
                       +|+++..
T Consensus       439 ~ivagiGk  446 (479)
T KOG0299|consen  439 RIVAGIGK  446 (479)
T ss_pred             EEEEeccc
Confidence             8888765

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=95.92  E-value=1.6  Score=41.39  Aligned_cols=110  Identities=7%  Similarity=-0.070  Sum_probs=58.4

Q ss_pred             cccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCc--ceeEeccc-CCCCcCceEECCCCCEEEEeecCCchhhHhhhcch
Q 018474          192 ANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAG--ILDAFIEN-LPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCR  268 (355)
Q Consensus       192 pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~--~~~~~~~~-~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~  268 (355)
                      -.++.+.+|+. +|++. ..+.+.+-.-.+..-.  ++....-. .+....++.+.+++.+|++...             
T Consensus       283 l~~v~~~~dg~-l~l~g-~~G~l~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~-------------  347 (398)
T PLN00033        283 IQNMGWRADGG-LWLLT-RGGGLYVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGS-------------  347 (398)
T ss_pred             eeeeeEcCCCC-EEEEe-CCceEEEecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECC-------------
Confidence            45677888887 55554 3456655443332110  12211101 1111344667788899998765             


Q ss_pred             hHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEE-eCCEEEEeecCCCeEEEe
Q 018474          269 EKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAE-FDGNLYLASLQSNFIGIL  343 (355)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~  343 (355)
                                              +.+++-.. .|+........++. ....+.+.+ ++++.|+... +..|.|+
T Consensus       348 ------------------------G~v~~s~D-~G~tW~~~~~~~~~-~~~ly~v~f~~~~~g~~~G~-~G~il~~  396 (398)
T PLN00033        348 ------------------------GILLRSTD-GGKSWKRDKGADNI-AANLYSVKFFDDKKGFVLGN-DGVLLRY  396 (398)
T ss_pred             ------------------------CcEEEeCC-CCcceeEccccCCC-CcceeEEEEcCCCceEEEeC-CcEEEEe
Confidence                                    33444444 77766665432322 234445664 5589999887 4445554

>PHA02713 hypothetical protein; Provisional

Probab=95.81  E-value=0.99  Score=44.96  Aligned_cols=185  Identities=12%  Similarity=0.082  Sum_probs=89.9

Q ss_pred             CCeEEEEec-C------CEEEEEEcCCCeeEEeeccC-CCcccCeEECCCCCEEEEeCCC------cEEEEcC-CC-eEE
Q 018474           63 KGALYTATR-D------GWVKYFILHNETLVNWKHID-SQSLLGLTTTKDGGVILCDNEK------GLLKVTE-EG-VEA  126 (355)
Q Consensus        63 ~g~l~~~~~-~------g~i~~~~~~~g~~~~~~~~~-~~p~~gl~~d~~g~L~v~~~~~------gl~~~~~-~g-~~~  126 (355)
                      ++.+|+... +      ..+.++|+.+++|....... .+..-+++. -+|+||+.....      .+.+|++ +. -+.
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~-~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~  381 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAV-IDDTIYAIGGQNGTNVERTIECYTMGDDKWKM  381 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEE-ECCEEEEECCcCCCCCCceEEEEECCCCeEEE
Confidence            667786422 1      35789999888887654322 111102222 378999865332      2667775 44 444


Q ss_pred             EcCCc-CCcccEEEccCCcEEEEeCCCCCCC---ccccccc--cc-cCCCCeEEEEeCCCCeEEEeeccc--cccccEEE
Q 018474          127 IVPDA-SFTNDVIAASDGTLYFTVASTKYTP---TDFYKDM--AE-GKPYGQLRKYDPKLKETTVLHEGF--YFANGIAL  197 (355)
Q Consensus       127 ~~~~~-~~~~~l~~d~dG~ly~~d~~~~~~~---~~~~~~~--~~-~~~~g~l~~~dp~~~~~~~~~~~~--~~pngi~~  197 (355)
                      ++.-. ..-..-++.-+|.||+.........   ......+  .. ......+.+|||.+.+++.+..-.  ....+++.
T Consensus       382 ~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~  461 (557)
T PHA02713        382 LPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVS  461 (557)
T ss_pred             CCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEE
Confidence            33322 1111112234789998653210000   0000000  00 011346999999999998765321  12234443


Q ss_pred             eCCCCEEEEEeCCC------CeEEEEEeCCCCCcceeEecccCCC--CcCceEECCCCCEEEEee
Q 018474          198 SKNEDFVVVCESWK------FRCRRYWLKGDRAGILDAFIENLPG--GPDNINLAPDGSFWIGLI  254 (355)
Q Consensus       198 ~~dg~~l~v~~~~~------~~i~~~~~~~~~~~~~~~~~~~~~g--~p~~i~~d~~G~lwv~~~  254 (355)
                      . +++ +|+..-..      ..+.+|+++..  .+.+... .++.  .--+++. -+|+||+.-.
T Consensus       462 ~-~~~-IYv~GG~~~~~~~~~~ve~Ydp~~~--~~W~~~~-~m~~~r~~~~~~~-~~~~iyv~Gg  520 (557)
T PHA02713        462 H-KDD-IYVVCDIKDEKNVKTCIFRYNTNTY--NGWELIT-TTESRLSALHTIL-HDNTIMMLHC  520 (557)
T ss_pred             E-CCE-EEEEeCCCCCCccceeEEEecCCCC--CCeeEcc-ccCcccccceeEE-ECCEEEEEee
Confidence            3 444 88875321      34678887531  1232222 2221  1123333 2578988654

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=95.76  E-value=0.41  Score=45.42  Aligned_cols=172  Identities=11%  Similarity=0.064  Sum_probs=94.8

Q ss_pred             EeeCCCeEEEEecCCEEEEEEcCCCeeEEeec-cC--CCcccCeEECCCCCEEEEeCCCc-EEEEc-CCC--eEEEcCCc
Q 018474           59 VVVSKGALYTATRDGWVKYFILHNETLVNWKH-ID--SQSLLGLTTTKDGGVILCDNEKG-LLKVT-EEG--VEAIVPDA  131 (355)
Q Consensus        59 ~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~-~~--~~p~~gl~~d~~g~L~v~~~~~g-l~~~~-~~g--~~~~~~~~  131 (355)
                      ..++++.|.++.+-..+..+|...-....-.. ..  ...+ .+++.+|-++.++....| |..+| .+.  ++.+....
T Consensus       473 L~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCy-ALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGht  551 (705)
T KOG0639|consen  473 LLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACY-ALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT  551 (705)
T ss_pred             ecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhh-hhhcCCccceeeeeccCCcEEEEEcccceeeecccCCC
Confidence            33456667776665566666664332211111 11  2245 677778888877665656 44555 344  56565555


Q ss_pred             CCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccc-cccccEEEeCCCCEEEEEeC
Q 018474          132 SFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGF-YFANGIALSKNEDFVVVCES  209 (355)
Q Consensus       132 ~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~-~~pngi~~~~dg~~l~v~~~  209 (355)
                      .....|.+.+|| +||-+.                  ....+.+||..+++- ....++ +..-.+-.+|.+.++.+.-.
T Consensus       552 DGascIdis~dGtklWTGG------------------lDntvRcWDlregrq-lqqhdF~SQIfSLg~cP~~dWlavGMe  612 (705)
T KOG0639|consen  552 DGASCIDISKDGTKLWTGG------------------LDNTVRCWDLREGRQ-LQQHDFSSQIFSLGYCPTGDWLAVGME  612 (705)
T ss_pred             CCceeEEecCCCceeecCC------------------Cccceeehhhhhhhh-hhhhhhhhhheecccCCCccceeeecc
Confidence            678888999999 677542                  245677888765531 111121 11223445688887766543


Q ss_pred             CCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474          210 WKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       210 ~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                       ++.+++...++..  +++.-  ....-.-.+-+..-|+.||++..
T Consensus       613 -ns~vevlh~skp~--kyqlh--lheScVLSlKFa~cGkwfvStGk  653 (705)
T KOG0639|consen  613 -NSNVEVLHTSKPE--KYQLH--LHESCVLSLKFAYCGKWFVSTGK  653 (705)
T ss_pred             -cCcEEEEecCCcc--ceeec--ccccEEEEEEecccCceeeecCc
Confidence             4567777654421  12110  00011122456788999999976

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=95.68  E-value=0.3  Score=46.35  Aligned_cols=143  Identities=17%  Similarity=0.162  Sum_probs=79.4

Q ss_pred             EeeCCCeEEEEecCCEEEEEEcCCC-eeEEee-----ccCCCcccCeEECCCCC-EEEEeCCCcEEEEcC---CC-eEE-
Q 018474           59 VVVSKGALYTATRDGWVKYFILHNE-TLVNWK-----HIDSQSLLGLTTTKDGG-VILCDNEKGLLKVTE---EG-VEA-  126 (355)
Q Consensus        59 ~d~~~g~l~~~~~~g~i~~~~~~~g-~~~~~~-----~~~~~p~~gl~~d~~g~-L~v~~~~~gl~~~~~---~g-~~~-  126 (355)
                      +......+|++.. |.|..+|...- .-..+.     ...+.+. ...+-+||+ |+|+.-...+-..|.   +- ++. 
T Consensus       427 IS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiR-SckL~pdgrtLivGGeastlsiWDLAapTprikae  504 (705)
T KOG0639|consen  427 ISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIR-SCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAE  504 (705)
T ss_pred             ecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCccccee-eeEecCCCceEEeccccceeeeeeccCCCcchhhh
Confidence            3334666777654 45777776221 111111     1123344 455667886 666543333444442   22 221 


Q ss_pred             EcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecc-ccccccEEEeCCCCEEE
Q 018474          127 IVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG-FYFANGIALSKNEDFVV  205 (355)
Q Consensus       127 ~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~-~~~pngi~~~~dg~~l~  205 (355)
                      +......-..+++++|-++-|+.-+                 .|.|..||..+..+.....+ .-....|.+++||-.| 
T Consensus       505 ltssapaCyALa~spDakvcFsccs-----------------dGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtkl-  566 (705)
T KOG0639|consen  505 LTSSAPACYALAISPDAKVCFSCCS-----------------DGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKL-  566 (705)
T ss_pred             cCCcchhhhhhhcCCccceeeeecc-----------------CCcEEEEEcccceeeecccCCCCCceeEEecCCCcee-
Confidence            2222133445788899888876433                 57788899865543322222 2345568899999855 


Q ss_pred             EEeCCCCeEEEEEeCC
Q 018474          206 VCESWKFRCRRYWLKG  221 (355)
Q Consensus       206 v~~~~~~~i~~~~~~~  221 (355)
                      |+.-..+.|.+||+..
T Consensus       567 WTGGlDntvRcWDlre  582 (705)
T KOG0639|consen  567 WTGGLDNTVRCWDLRE  582 (705)
T ss_pred             ecCCCccceeehhhhh
Confidence            5555678999999854

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.55  E-value=0.89  Score=42.09  Aligned_cols=185  Identities=14%  Similarity=0.075  Sum_probs=91.3

Q ss_pred             ceEEEeeCCCeEEEEecCCEEEEEE-cCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEc-CCC--eEEEcCC
Q 018474           55 EDVSVVVSKGALYTATRDGWVKYFI-LHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT-EEG--VEAIVPD  130 (355)
Q Consensus        55 ~~i~~d~~~g~l~~~~~~g~i~~~~-~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~-~~g--~~~~~~~  130 (355)
                      -.+++..++..+-++..||.++.++ |..............+. .|.+.+||.+.+..........+ .+|  +....+.
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~-DL~FS~dgk~lasig~d~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVK-DLDFSPDGKFLASIGADSARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccc-cceeCCCCcEEEEecCCceEEEEeccCchhhhcCCc
Confidence            4555553445566666777777776 53322222222334577 89999999887766555444444 355  3333321


Q ss_pred             c--CCcccE--EEccC-CcEEEEeCCCCCC-CccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEE
Q 018474          131 A--SFTNDV--IAASD-GTLYFTVASTKYT-PTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFV  204 (355)
Q Consensus       131 ~--~~~~~l--~~d~d-G~ly~~d~~~~~~-~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l  204 (355)
                      .  .....+  ..|++ .++++.....+.. +.         .....++..+ +-.+.+...........++++.||+++
T Consensus       227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~---------~~~~~~w~~~-~~l~~~~~~~~~~siSsl~VS~dGkf~  296 (398)
T KOG0771|consen  227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVR---------LCDISLWSGS-NFLRLRKKIKRFKSISSLAVSDDGKFL  296 (398)
T ss_pred             ccchhhhhceecccCCCceEEEEEecCCCCcee---------EEEeeeeccc-cccchhhhhhccCcceeEEEcCCCcEE
Confidence            1  111112  22222 2677665431100 00         0011122222 111222222223345578899999955


Q ss_pred             EEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEe
Q 018474          205 VVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGL  253 (355)
Q Consensus       205 ~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~  253 (355)
                      -+ .+..+-|..|+...  ......+.....+...++.+.++-+.....
T Consensus       297 Al-GT~dGsVai~~~~~--lq~~~~vk~aH~~~VT~ltF~Pdsr~~~sv  342 (398)
T KOG0771|consen  297 AL-GTMDGSVAIYDAKS--LQRLQYVKEAHLGFVTGLTFSPDSRYLASV  342 (398)
T ss_pred             EE-eccCCcEEEEEece--eeeeEeehhhheeeeeeEEEcCCcCccccc
Confidence            55 46678888888632  222222222233456667777766665554

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=95.54  E-value=1.2  Score=43.41  Aligned_cols=83  Identities=13%  Similarity=0.077  Sum_probs=47.1

Q ss_pred             CCccccccCCCCCCCcCcc---CceEecCCCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCe
Q 018474           23 SVSSLASLLSISKESSSMK---GLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGL   99 (355)
Q Consensus        23 ~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl   99 (355)
                      .++|..+....|.+++--.   .+..+.-|.-..-.+|.+++.+..|-.|+.+|.+..+...+|+-.......+.+. ++
T Consensus       369 niDpe~LiPkLPsp~dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~-~v  447 (733)
T KOG0650|consen  369 NIDPESLIPKLPSPKDLRPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIR-SV  447 (733)
T ss_pred             cCCHHHhcccCCChhhcCCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeE-EE
Confidence            3566654455565443211   1223333444556788899655545556678988888888886443323334456 77


Q ss_pred             EECCCCC
Q 018474          100 TTTKDGG  106 (355)
Q Consensus       100 ~~d~~g~  106 (355)
                      ++.+.+.
T Consensus       448 aw~P~~~  454 (733)
T KOG0650|consen  448 AWNPLSD  454 (733)
T ss_pred             EecCCCC
Confidence            7776554

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=95.53  E-value=3.2  Score=42.85  Aligned_cols=60  Identities=18%  Similarity=0.220  Sum_probs=40.5

Q ss_pred             CCCeEEEEecCCEEEEEEcCCCeeEEeecc-CC--C-------cccCeEEC-----------------CCCCEEEEeCCC
Q 018474           62 SKGALYTATRDGWVKYFILHNETLVNWKHI-DS--Q-------SLLGLTTT-----------------KDGGVILCDNEK  114 (355)
Q Consensus        62 ~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~-~~--~-------p~~gl~~d-----------------~~g~L~v~~~~~  114 (355)
                      .++.+|+++.++.|+.+|.++|+.. |... ..  .       .. |+..-                 .++++|+++...
T Consensus       193 vgg~lYv~t~~~~V~ALDa~TGk~l-W~~d~~~~~~~~~~~~~cR-Gvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg  270 (764)
T TIGR03074       193 VGDTLYLCTPHNKVIALDAATGKEK-WKFDPKLKTEAGRQHQTCR-GVSYYDAPAAAAGPAAPAAPADCARRIILPTSDA  270 (764)
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEE-EEEcCCCCccccccccccc-ceEEecCCcccccccccccccccCCEEEEecCCC
Confidence            3789999999999999999999743 2111 00  0       11 22221                 245899988777


Q ss_pred             cEEEEc-CCC
Q 018474          115 GLLKVT-EEG  123 (355)
Q Consensus       115 gl~~~~-~~g  123 (355)
                      .++.+| ++|
T Consensus       271 ~LiALDA~TG  280 (764)
T TIGR03074       271 RLIALDADTG  280 (764)
T ss_pred             eEEEEECCCC
Confidence            799999 577

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=95.49  E-value=2.1  Score=41.03  Aligned_cols=184  Identities=13%  Similarity=0.116  Sum_probs=89.7

Q ss_pred             CCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeec----------cCCCcc--cCeEECCCC-CEEEEeCCCcEEE
Q 018474           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH----------IDSQSL--LGLTTTKDG-GVILCDNEKGLLK  118 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~----------~~~~p~--~gl~~d~~g-~L~v~~~~~gl~~  118 (355)
                      ..-.++.+.+.++.+.+.+.......+|...-++.++..          +.++..  ++-.+.++. ..+++...+|-+|
T Consensus       215 h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlR  294 (641)
T KOG0772|consen  215 HQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLR  294 (641)
T ss_pred             cccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEE
Confidence            344556666555555555544445555552223333221          112221  022333333 4566555556444


Q ss_pred             Ec---CCC--eEEEcCCc-----CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEE--e-
Q 018474          119 VT---EEG--VEAIVPDA-----SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV--L-  185 (355)
Q Consensus       119 ~~---~~g--~~~~~~~~-----~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~--~-  185 (355)
                      +.   ...  .+++....     ..+...++++||.++.+.                 -..|.|-.|+..+..+.+  . 
T Consensus       295 iWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAag-----------------c~DGSIQ~W~~~~~~v~p~~~v  357 (641)
T KOG0772|consen  295 IWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAG-----------------CLDGSIQIWDKGSRTVRPVMKV  357 (641)
T ss_pred             EEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhc-----------------ccCCceeeeecCCcccccceEe
Confidence            43   222  44443322     456677889999875431                 114455555531111111  1 


Q ss_pred             ---eccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCC-Cc-CceEECCCCCEEEEeec
Q 018474          186 ---HEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPG-GP-DNINLAPDGSFWIGLIK  255 (355)
Q Consensus       186 ---~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g-~p-~~i~~d~~G~lwv~~~~  255 (355)
                         .........|+|+.||+. +.+-...+.+..|+++..+. ...... +++. +| .+.+++++-.|.++-..
T Consensus       358 k~AH~~g~~Itsi~FS~dg~~-LlSRg~D~tLKvWDLrq~kk-pL~~~t-gL~t~~~~tdc~FSPd~kli~TGtS  429 (641)
T KOG0772|consen  358 KDAHLPGQDITSISFSYDGNY-LLSRGFDDTLKVWDLRQFKK-PLNVRT-GLPTPFPGTDCCFSPDDKLILTGTS  429 (641)
T ss_pred             eeccCCCCceeEEEeccccch-hhhccCCCceeeeecccccc-chhhhc-CCCccCCCCccccCCCceEEEeccc
Confidence               112223467899999984 45555567788888854221 011111 2322 22 45788988887665433

>PRK13616 lipoprotein LpqB; Provisional

Probab=95.45  E-value=3.2  Score=41.57  Aligned_cols=225  Identities=12%  Similarity=0.044  Sum_probs=113.7

Q ss_pred             eEEEEecCCEEEEEEcCCCeeEEeecc---CCCcccCeEECCCCCE--EEEe------C-CCcEEEEcCCC-eEEEcCCc
Q 018474           65 ALYTATRDGWVKYFILHNETLVNWKHI---DSQSLLGLTTTKDGGV--ILCD------N-EKGLLKVTEEG-VEAIVPDA  131 (355)
Q Consensus        65 ~l~~~~~~g~i~~~~~~~g~~~~~~~~---~~~p~~gl~~d~~g~L--~v~~------~-~~gl~~~~~~g-~~~~~~~~  131 (355)
                      .+|+-. +|.+.+++.  +........   ...+. ..++.++|+.  |+..      . ...|+..+..+ .+.+... 
T Consensus       322 ~~~~v~-~G~l~~~~~--~~~~pv~g~~g~~~~vs-spaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g-  396 (591)
T PRK13616        322 GLHALV-DGSLVSVDG--QGVTPVPGAFGQMGNIT-SAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEG-  396 (591)
T ss_pred             cceEEE-CCeEEEecC--CCeeeCCCccccccCcc-cceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecC-
Confidence            455333 777777753  222222111   12344 6667777763  3331      1 12355555333 3333222 


Q ss_pred             CCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCC
Q 018474          132 SFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESW  210 (355)
Q Consensus       132 ~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~  210 (355)
                      .....-.+++|| .||+.....+      ...+......+.++..+.++++...  .-......+.++|||+.+.+.-. 
T Consensus       397 ~~~t~PsWspDG~~lw~v~dg~~------~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~-  467 (591)
T PRK13616        397 HSLTRPSWSLDADAVWVVVDGNT------VVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIG-  467 (591)
T ss_pred             CCCCCceECCCCCceEEEecCcc------eEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEEC-
Confidence            224455788995 7888743211      0111111224567766655555432  11123667899999998877653 


Q ss_pred             CCeEEEEEe---CCCC--CcceeEecccCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhccc
Q 018474          211 KFRCRRYWL---KGDR--AGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLL  285 (355)
Q Consensus       211 ~~~i~~~~~---~~~~--~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (355)
                       ++|+.--+   ++..  ++....+...+...+..+..-.++.|.|++...                             
T Consensus       468 -g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~-----------------------------  517 (591)
T PRK13616        468 -GKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDP-----------------------------  517 (591)
T ss_pred             -CEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecCC-----------------------------
Confidence             56766333   2221  222222222232223456566677888776431                             


Q ss_pred             CCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeCCEEEEeecCCCeEEEee
Q 018474          286 PMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILP  344 (355)
Q Consensus       286 ~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~  344 (355)
                            ...+++++. +|.....+  +.+.....+..+....+.||+++..  .+..++
T Consensus       518 ------~~~v~~v~v-DG~~~~~~--~~~n~~~~v~~vaa~~~~iyv~~~~--g~~~l~  565 (591)
T PRK13616        518 ------EHPVWYVNL-DGSNSDAL--PSRNLSAPVVAVAASPSTVYVTDAR--AVLQLP  565 (591)
T ss_pred             ------CCceEEEec-CCcccccc--CCCCccCceEEEecCCceEEEEcCC--ceEEec
Confidence                  134788888 88765543  2222234455555556789998753  344443

>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]

Probab=95.42  E-value=1.7  Score=38.06  Aligned_cols=82  Identities=20%  Similarity=0.299  Sum_probs=49.8

Q ss_pred             eEEEEeCCCCeEEEeec-------cccccccEEEeCCCC----EEEEEeCCCCeEEEEEeCC---CCCcc--eeEecccC
Q 018474          171 QLRKYDPKLKETTVLHE-------GFYFANGIALSKNED----FVVVCESWKFRCRRYWLKG---DRAGI--LDAFIENL  234 (355)
Q Consensus       171 ~l~~~dp~~~~~~~~~~-------~~~~pngi~~~~dg~----~l~v~~~~~~~i~~~~~~~---~~~~~--~~~~~~~~  234 (355)
                      .+|.+||+++.++.+.+       ..+.+.|+|+..+.+    .++++. ..+-+.+|.+-.   .+.+.  .+.|  .+
T Consensus       127 ~~y~Idp~~~~L~sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~-~qG~~~Qy~l~d~gnGkv~~k~vR~f--k~  203 (364)
T COG4247         127 VFYKIDPNPQYLESITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNR-RQGDIAQYKLIDQGNGKVGTKLVRQF--KI  203 (364)
T ss_pred             EEEEeCCCccceeeccCCCCccccCcccceeeEEEecCCcCcEEEEEec-CCCceeEEEEEecCCceEcceeeEee--ec
Confidence            47788888777665533       356678999887654    344443 346677887722   12221  2222  34


Q ss_pred             CCCcCceEEC-CCCCEEEEeec
Q 018474          235 PGGPDNINLA-PDGSFWIGLIK  255 (355)
Q Consensus       235 ~g~p~~i~~d-~~G~lwv~~~~  255 (355)
                      +..-.|++.| .-|.+||+...
T Consensus       204 ~tQTEG~VaDdEtG~LYIaeEd  225 (364)
T COG4247         204 PTQTEGMVADDETGFLYIAEED  225 (364)
T ss_pred             CCcccceeeccccceEEEeecc
Confidence            4556777665 55899999765

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=95.37  E-value=2.2  Score=39.07  Aligned_cols=147  Identities=8%  Similarity=-0.009  Sum_probs=80.6

Q ss_pred             eEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEe-eccCCCcccCeEECCCCCEEEEeCCCcEEEEc--CCC-eE-EEcCC
Q 018474           56 DVSVVVSKGALYTATRDGWVKYFILHNETLVNW-KHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG-VE-AIVPD  130 (355)
Q Consensus        56 ~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~-~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~--~~g-~~-~~~~~  130 (355)
                      +++.+|....+-.|..|..-+.++..+|.+.-- ........ .+.+..+|.+.++..-.|.+++.  .+| .+ .+...
T Consensus        69 avsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt-~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e  147 (399)
T KOG0296|consen   69 AVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVT-CCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQE  147 (399)
T ss_pred             EEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceE-EEEEccCceEEEecCCCccEEEEEcccCceEEEeecc
Confidence            445554233233345566677888777763221 11223455 78888888887765455656554  355 32 22222


Q ss_pred             cCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccc-cccccEEEeCCCCEEEEEeC
Q 018474          131 ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGF-YFANGIALSKNEDFVVVCES  209 (355)
Q Consensus       131 ~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~-~~pngi~~~~dg~~l~v~~~  209 (355)
                      ...+.=+...|.+.+.++.                 ...|.++.|.-.++....+..+. ..-+.-.+.|||+.+.... 
T Consensus       148 ~~dieWl~WHp~a~illAG-----------------~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy-  209 (399)
T KOG0296|consen  148 VEDIEWLKWHPRAHILLAG-----------------STDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGY-  209 (399)
T ss_pred             cCceEEEEecccccEEEee-----------------cCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEe-
Confidence            1222223455555555543                 33678888876553333333332 2233446889999666555 


Q ss_pred             CCCeEEEEEeCC
Q 018474          210 WKFRCRRYWLKG  221 (355)
Q Consensus       210 ~~~~i~~~~~~~  221 (355)
                      ..+.|..+++..
T Consensus       210 ~dgti~~Wn~kt  221 (399)
T KOG0296|consen  210 DDGTIIVWNPKT  221 (399)
T ss_pred             cCceEEEEecCC
Confidence            467888888743

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=95.31  E-value=3.5  Score=41.78  Aligned_cols=140  Identities=13%  Similarity=0.133  Sum_probs=82.7

Q ss_pred             CcccCeEECCCCCE-EEEeCCCcEEEEc-CCC--eEEEcCCc---CCcccEEEccCCcEEEEeCCCCCCCcccccccccc
Q 018474           94 QSLLGLTTTKDGGV-ILCDNEKGLLKVT-EEG--VEAIVPDA---SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEG  166 (355)
Q Consensus        94 ~p~~gl~~d~~g~L-~v~~~~~gl~~~~-~~g--~~~~~~~~---~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~  166 (355)
                      ... +++.+.=|+. +++.+.+-|-+++ +.|  .+.+....   ..+.++++|.-+++.++...               
T Consensus       450 ~~~-av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~---------------  513 (910)
T KOG1539|consen  450 NAT-AVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGA---------------  513 (910)
T ss_pred             ceE-EEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccC---------------
Confidence            345 6777777775 5555555577888 577  44453222   67889999998888887543               


Q ss_pred             CCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCC
Q 018474          167 KPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPD  246 (355)
Q Consensus       167 ~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~  246 (355)
                        .|-+..||-+++.+..-..-...+.++..+.... ++......-.|..||....+.  .+.|- +.......+.+++|
T Consensus       514 --~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~-l~a~~~ddf~I~vvD~~t~kv--vR~f~-gh~nritd~~FS~D  587 (910)
T KOG1539|consen  514 --DGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSD-LLAIALDDFSIRVVDVVTRKV--VREFW-GHGNRITDMTFSPD  587 (910)
T ss_pred             --cceEEEEecCCcceeeeeccCCCcceeeeeehhh-hhhhhcCceeEEEEEchhhhh--hHHhh-ccccceeeeEeCCC
Confidence              4556666765544322122223455666665554 445555567888888643221  22232 23334567889999


Q ss_pred             CCEEEEeec
Q 018474          247 GSFWIGLIK  255 (355)
Q Consensus       247 G~lwv~~~~  255 (355)
                      |+..++...
T Consensus       588 grWlisasm  596 (910)
T KOG1539|consen  588 GRWLISASM  596 (910)
T ss_pred             CcEEEEeec
Confidence            986555543

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=95.31  E-value=0.42  Score=44.28  Aligned_cols=99  Identities=17%  Similarity=0.204  Sum_probs=65.2

Q ss_pred             CCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccC-CCcccCeEECCCCC-EEEEeCCCcEEEEcC-CCeEE-
Q 018474           51 VNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHID-SQSLLGLTTTKDGG-VILCDNEKGLLKVTE-EGVEA-  126 (355)
Q Consensus        51 ~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~-~~p~~gl~~d~~g~-L~v~~~~~gl~~~~~-~g~~~-  126 (355)
                      ...+.+.++-|++-.+.+|+.++.+..++........|.... ...+ .+++..||. ++..+....+..++. +.+.+ 
T Consensus       312 ~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~-dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~  390 (519)
T KOG0293|consen  312 GFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVH-DLAITYDGKYVLLVTVDKKIRLYNREARVDRG  390 (519)
T ss_pred             CCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeE-EEEEcCCCcEEEEEecccceeeechhhhhhhc
Confidence            468899999988888889999999999998444434443221 2356 788888886 554444556666663 22211 


Q ss_pred             EcCCcCCcccEEEccCCcEEEEeC
Q 018474          127 IVPDASFTNDVIAASDGTLYFTVA  150 (355)
Q Consensus       127 ~~~~~~~~~~l~~d~dG~ly~~d~  150 (355)
                      +......+.++.++.||.+.+.+-
T Consensus       391 lise~~~its~~iS~d~k~~LvnL  414 (519)
T KOG0293|consen  391 LISEEQPITSFSISKDGKLALVNL  414 (519)
T ss_pred             cccccCceeEEEEcCCCcEEEEEc
Confidence            222225677888999998877654

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=95.29  E-value=2.7  Score=39.77  Aligned_cols=140  Identities=14%  Similarity=0.181  Sum_probs=77.1

Q ss_pred             CcccCeEECCCCCEEEEeCCCcEEEEc--CCC--eEEEcCCcCCcccEEEccCC-cEEEEeCCCCCCCccccccccccCC
Q 018474           94 QSLLGLTTTKDGGVILCDNEKGLLKVT--EEG--VEAIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKP  168 (355)
Q Consensus        94 ~p~~gl~~d~~g~L~v~~~~~gl~~~~--~~g--~~~~~~~~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~  168 (355)
                      ..+ +..+-.||+|..+....|.+++.  ++.  +..+.....-++.+-+.+++ +++++.+.                 
T Consensus        70 ~v~-s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sD-----------------  131 (487)
T KOG0310|consen   70 VVY-SVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSD-----------------  131 (487)
T ss_pred             cee-EEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCC-----------------
Confidence            355 77777899998887666766654  232  33333332334455667655 55554322                 


Q ss_pred             CCeEEEEeCCCCeEEEeecc-ccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCC-cCceEECCC
Q 018474          169 YGQLRKYDPKLKETTVLHEG-FYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGG-PDNINLAPD  246 (355)
Q Consensus       169 ~g~l~~~dp~~~~~~~~~~~-~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~-p~~i~~d~~  246 (355)
                      ..-+-.||.++..+..-..+ --.-...+++|...+++++....+.|..|+.........+ +  + .|. ...+..-+.
T Consensus       132 d~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~e-l--n-hg~pVe~vl~lps  207 (487)
T KOG0310|consen  132 DKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVE-L--N-HGCPVESVLALPS  207 (487)
T ss_pred             CceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEE-e--c-CCCceeeEEEcCC
Confidence            11233345554443211111 1123455677877889999999999999987543211111 1  1 122 345666666


Q ss_pred             CCEEEEeec
Q 018474          247 GSFWIGLIK  255 (355)
Q Consensus       247 G~lwv~~~~  255 (355)
                      |.+.+++.+
T Consensus       208 gs~iasAgG  216 (487)
T KOG0310|consen  208 GSLIASAGG  216 (487)
T ss_pred             CCEEEEcCC
Confidence            777777655

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=95.23  E-value=2.7  Score=39.43  Aligned_cols=99  Identities=15%  Similarity=0.096  Sum_probs=57.4

Q ss_pred             ECCCCCEEEEeCCCcEEEEcC-CCeEEEcCC----cCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEE
Q 018474          101 TTKDGGVILCDNEKGLLKVTE-EGVEAIVPD----ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKY  175 (355)
Q Consensus       101 ~d~~g~L~v~~~~~gl~~~~~-~g~~~~~~~----~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~  175 (355)
                      .+.+|++|++...+.++.++. ++.......    ....+.-....+|+||+++..                  +.+|++
T Consensus        65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~------------------g~~y~l  126 (370)
T COG1520          65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWD------------------GKLYAL  126 (370)
T ss_pred             EeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEeccc------------------ceEEEE
Confidence            567899999865656899985 552222111    123444444458999998654                  368999


Q ss_pred             eCCCCeEEEeecccc---ccccEEEeCCCCEEEEEeCCCCeEEEEEeC
Q 018474          176 DPKLKETTVLHEGFY---FANGIALSKNEDFVVVCESWKFRCRRYWLK  220 (355)
Q Consensus       176 dp~~~~~~~~~~~~~---~pngi~~~~dg~~l~v~~~~~~~i~~~~~~  220 (355)
                      |+++|+.........   ... -++-.|+. +|+.. ..+.+++++.+
T Consensus       127 d~~~G~~~W~~~~~~~~~~~~-~~v~~~~~-v~~~s-~~g~~~al~~~  171 (370)
T COG1520         127 DASTGTLVWSRNVGGSPYYAS-PPVVGDGT-VYVGT-DDGHLYALNAD  171 (370)
T ss_pred             ECCCCcEEEEEecCCCeEEec-CcEEcCcE-EEEec-CCCeEEEEEcc
Confidence            987776654432222   111 12333443 55543 45677777765

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=95.21  E-value=0.21  Score=46.00  Aligned_cols=147  Identities=12%  Similarity=0.159  Sum_probs=88.9

Q ss_pred             ceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEc-CC-C-eEEEcCC-
Q 018474           55 EDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT-EE-G-VEAIVPD-  130 (355)
Q Consensus        55 ~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~-~~-g-~~~~~~~-  130 (355)
                      ..+.+.|++++|.+++..|..-.++...=.++.+...-..|.++|.+..+|+-.|....+|.++|- ++ . ++.+... 
T Consensus       100 ~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh  179 (464)
T KOG0284|consen  100 NVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHH  179 (464)
T ss_pred             eeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhh
Confidence            356677778889999988887777541111111111112333388888888877766667888887 32 2 4433222 


Q ss_pred             cCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCC-eEEEeeccccccccEEEeCCCCEEEEEeC
Q 018474          131 ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLK-ETTVLHEGFYFANGIALSKNEDFVVVCES  209 (355)
Q Consensus       131 ~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~-~~~~~~~~~~~pngi~~~~dg~~l~v~~~  209 (355)
                      ...+.+++++|+...|++-+.                 .|.+..||-.-. +-+++.....-+..+..+|... ++++..
T Consensus       180 ~eaIRdlafSpnDskF~t~Sd-----------------Dg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kg-Liasgs  241 (464)
T KOG0284|consen  180 AEAIRDLAFSPNDSKFLTCSD-----------------DGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKG-LIASGS  241 (464)
T ss_pred             hhhhheeccCCCCceeEEecC-----------------CCeEEEEeccCCchhheeccCCCCcceeccCCccc-eeEEcc
Confidence            267899999998888887554                 455666664322 2223333334567788999765 777776


Q ss_pred             CCCeEEEEEe
Q 018474          210 WKFRCRRYWL  219 (355)
Q Consensus       210 ~~~~i~~~~~  219 (355)
                      ..+-|..+|.
T Consensus       242 kDnlVKlWDp  251 (464)
T KOG0284|consen  242 KDNLVKLWDP  251 (464)
T ss_pred             CCceeEeecC
Confidence            6664444454

>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats

Probab=95.20  E-value=0.026  Score=30.17  Aligned_cols=16  Identities=38%  Similarity=0.729  Sum_probs=12.5

Q ss_pred             CceEECCCCCEEEEee
Q 018474          239 DNINLAPDGSFWIGLI  254 (355)
Q Consensus       239 ~~i~~d~~G~lwv~~~  254 (355)
                      ..+..|++|++|+++.
T Consensus         8 ~~i~~D~~G~lWigT~   23 (24)
T PF07494_consen    8 YSIYEDSDGNLWIGTY   23 (24)
T ss_dssp             EEEEE-TTSCEEEEET
T ss_pred             EEEEEcCCcCEEEEeC
Confidence            3477899999999985

These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=95.16  E-value=2.4  Score=42.52  Aligned_cols=184  Identities=15%  Similarity=0.110  Sum_probs=104.6

Q ss_pred             CCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCe-eEEeeccCCCcccCeEECC-CCCEEEEeCCCcEEEEc--CCC-
Q 018474           49 GCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNET-LVNWKHIDSQSLLGLTTTK-DGGVILCDNEKGLLKVT--EEG-  123 (355)
Q Consensus        49 ~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~-~~~~~~~~~~p~~gl~~d~-~g~L~v~~~~~gl~~~~--~~g-  123 (355)
                      |....--+|.|. +++.|..++.|..+..+++.... +..|.+ ..... +++|.| |.+.|+...-+|-+|+.  ++. 
T Consensus       367 GHt~DILDlSWS-Kn~fLLSSSMDKTVRLWh~~~~~CL~~F~H-ndfVT-cVaFnPvDDryFiSGSLD~KvRiWsI~d~~  443 (712)
T KOG0283|consen  367 GHTADILDLSWS-KNNFLLSSSMDKTVRLWHPGRKECLKVFSH-NDFVT-CVAFNPVDDRYFISGSLDGKVRLWSISDKK  443 (712)
T ss_pred             ccchhheecccc-cCCeeEeccccccEEeecCCCcceeeEEec-CCeeE-EEEecccCCCcEeecccccceEEeecCcCe
Confidence            333444567787 78888889999999999886554 444444 34566 888885 55777776666766665  333 


Q ss_pred             eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee----cc-----cccccc
Q 018474          124 VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH----EG-----FYFANG  194 (355)
Q Consensus       124 ~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~----~~-----~~~png  194 (355)
                      +....+-...+..++..|||..-+..                 +-.|....|+....++..-.    ..     .....|
T Consensus       444 Vv~W~Dl~~lITAvcy~PdGk~avIG-----------------t~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG  506 (712)
T KOG0283|consen  444 VVDWNDLRDLITAVCYSPDGKGAVIG-----------------TFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITG  506 (712)
T ss_pred             eEeehhhhhhheeEEeccCCceEEEE-----------------EeccEEEEEEccCCeEEEeeeEeeccCccccCceeee
Confidence            33333222678889999999654432                 22455556665544443211    00     113456


Q ss_pred             EEEeCCCC-EEEEEeCCCCeEEEEEeCCCC-CcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474          195 IALSKNED-FVVVCESWKFRCRRYWLKGDR-AGILDAFIENLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       195 i~~~~dg~-~l~v~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      +.+.|... .++|+. ...+|..|+..... +.+++-+. +..+ ..--.++.||++.|....
T Consensus       507 ~Q~~p~~~~~vLVTS-nDSrIRI~d~~~~~lv~KfKG~~-n~~S-Q~~Asfs~Dgk~IVs~se  566 (712)
T KOG0283|consen  507 LQFFPGDPDEVLVTS-NDSRIRIYDGRDKDLVHKFKGFR-NTSS-QISASFSSDGKHIVSASE  566 (712)
T ss_pred             eEecCCCCCeEEEec-CCCceEEEeccchhhhhhhcccc-cCCc-ceeeeEccCCCEEEEeec
Confidence            66665333 366664 56899999974322 11111111 1111 111235667877776654

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=95.10  E-value=0.57  Score=42.88  Aligned_cols=112  Identities=18%  Similarity=0.180  Sum_probs=65.8

Q ss_pred             CCCeEEEEecCCEEEEEEcCCCeeE---Eeecc------CC-Cccc--CeEEC-CCCCEEEEeCC----------CcEEE
Q 018474           62 SKGALYTATRDGWVKYFILHNETLV---NWKHI------DS-QSLL--GLTTT-KDGGVILCDNE----------KGLLK  118 (355)
Q Consensus        62 ~~g~l~~~~~~g~i~~~~~~~g~~~---~~~~~------~~-~p~~--gl~~d-~~g~L~v~~~~----------~gl~~  118 (355)
                      .++.+|.-+.+|.|+.++......+   .|...      .+ +|-.  -++++ +.++|||..+.          ..++.
T Consensus       194 ~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv  273 (342)
T PF06433_consen  194 DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWV  273 (342)
T ss_dssp             TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEE
T ss_pred             CCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEE
Confidence            5667888889999999998544322   22110      11 2320  25665 57899996532          13888


Q ss_pred             Ec-CCC--eEEEcCCcCCcccEEEccCC--cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccc
Q 018474          119 VT-EEG--VEAIVPDASFTNDVIAASDG--TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYF  191 (355)
Q Consensus       119 ~~-~~g--~~~~~~~~~~~~~l~~d~dG--~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~  191 (355)
                      +| +++  +.++.-. ..+.+|.++.+.  .||..+..                 .+.|+.||+.+|+...-..++..
T Consensus       274 ~D~~t~krv~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~~-----------------~~~l~v~D~~tGk~~~~~~~lG~  333 (342)
T PF06433_consen  274 YDLKTHKRVARIPLE-HPIDSIAVSQDDKPLLYALSAG-----------------DGTLDVYDAATGKLVRSIEQLGE  333 (342)
T ss_dssp             EETTTTEEEEEEEEE-EEESEEEEESSSS-EEEEEETT-----------------TTEEEEEETTT--EEEEE---SS
T ss_pred             EECCCCeEEEEEeCC-CccceEEEccCCCcEEEEEcCC-----------------CCeEEEEeCcCCcEEeehhccCC
Confidence            88 466  5544432 346688888766  46655443                 56899999999987665555543

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=95.07  E-value=0.96  Score=41.30  Aligned_cols=182  Identities=14%  Similarity=0.154  Sum_probs=91.7

Q ss_pred             CCCCCCCceEEEeeCC-CeEEEEecCCEEEEEEcCCCee-EEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEcCCC--
Q 018474           48 EGCVNHPEDVSVVVSK-GALYTATRDGWVKYFILHNETL-VNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEEG--  123 (355)
Q Consensus        48 ~~~~~~p~~i~~d~~~-g~l~~~~~~g~i~~~~~~~g~~-~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~~g--  123 (355)
                      .|.-.|-.+++-+|.. ..+..|+.||.|..+|..+... ..+.-..+... ||.++....+++++.. .+-.+.-+|  
T Consensus        63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~-Gi~v~~~~~~tvgdDK-tvK~wk~~~~p  140 (433)
T KOG0268|consen   63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVR-GICVTQTSFFTVGDDK-TVKQWKIDGPP  140 (433)
T ss_pred             cccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCcee-eEEecccceEEecCCc-ceeeeeccCCc
Confidence            4556677788888544 4577788899999999855432 22222335577 9999875556666532 222221133  


Q ss_pred             eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCC-eEEEeeccccccccEEEeCCCC
Q 018474          124 VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLK-ETTVLHEGFYFANGIALSKNED  202 (355)
Q Consensus       124 ~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~-~~~~~~~~~~~pngi~~~~dg~  202 (355)
                      ++++... ....++.-...+.++.|.                   ...+-.||+.-. -++.+.-+.-.-..+.+.|-+-
T Consensus       141 ~~tilg~-s~~~gIdh~~~~~~FaTc-------------------Ge~i~IWD~~R~~Pv~smswG~Dti~svkfNpvET  200 (433)
T KOG0268|consen  141 LHTILGK-SVYLGIDHHRKNSVFATC-------------------GEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVET  200 (433)
T ss_pred             ceeeecc-cccccccccccccccccc-------------------CceeeecccccCCccceeecCCCceeEEecCCCcc
Confidence            3333222 112222211222232221                   112334443211 1111111111113455666666


Q ss_pred             EEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474          203 FVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       203 ~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      .++.+......|..||......  .+...  +...++.|+..+++-.+++...
T Consensus       201 sILas~~sDrsIvLyD~R~~~P--l~KVi--~~mRTN~IswnPeafnF~~a~E  249 (433)
T KOG0268|consen  201 SILASCASDRSIVLYDLRQASP--LKKVI--LTMRTNTICWNPEAFNFVAANE  249 (433)
T ss_pred             hheeeeccCCceEEEecccCCc--cceee--eeccccceecCccccceeeccc
Confidence            5666665667899999754321  11221  1123677888887766666554

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.03  E-value=4.9  Score=41.27  Aligned_cols=251  Identities=13%  Similarity=0.158  Sum_probs=130.5

Q ss_pred             CCceEEEeeCCCeEEEEecCCEEEEEEcCCCee-EEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEc--CCC--eEEE
Q 018474           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETL-VNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG--VEAI  127 (355)
Q Consensus        53 ~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~-~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~--~~g--~~~~  127 (355)
                      ..-++.++|..-.+.++..+|.|..+|-.=+.. .+|....+... |+.+.+.+-|||....+-.+++.  ++.  +-++
T Consensus        11 RvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVR-gv~FH~~qplFVSGGDDykIkVWnYk~rrclftL   89 (1202)
T KOG0292|consen   11 RVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVR-GVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTL   89 (1202)
T ss_pred             cccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccc-eeeecCCCCeEEecCCccEEEEEecccceehhhh
Confidence            445678887666666777899888887544432 23333345566 99999999999986544344443  332  3333


Q ss_pred             cCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecc-ccccccEEEeCCCCEEEE
Q 018474          128 VPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG-FYFANGIALSKNEDFVVV  206 (355)
Q Consensus       128 ~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~-~~~pngi~~~~dg~~l~v  206 (355)
                      ......++.+.+.+. .=|+-..+                ....+..||=.+++-....++ -.+--...|+|.+. +++
T Consensus        90 ~GHlDYVRt~~FHhe-yPWIlSAS----------------DDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptED-lIV  151 (1202)
T KOG0292|consen   90 LGHLDYVRTVFFHHE-YPWILSAS----------------DDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTED-LIV  151 (1202)
T ss_pred             ccccceeEEeeccCC-CceEEEcc----------------CCCeEEEEeccCCceEEEEecCceEEEeeccCCccc-eEE
Confidence            333345555555432 12332221                122344444334433222323 23333456888776 888


Q ss_pred             EeCCCCeEEEEEeCCCCCcceeE--ecc---------cCCCCcCceE---EC--CCCCEEEEeecCCchhhHhhhcchhH
Q 018474          207 CESWKFRCRRYWLKGDRAGILDA--FIE---------NLPGGPDNIN---LA--PDGSFWIGLIKMNQTGVRAIQKCREK  270 (355)
Q Consensus       207 ~~~~~~~i~~~~~~~~~~~~~~~--~~~---------~~~g~p~~i~---~d--~~G~lwv~~~~~~~~~~~~~~~~~~~  270 (355)
                      +.+....|.++|++|-+.++...  +-+         .+-|.+|-++   .+  ..|-=|++-+.-..-           
T Consensus       152 SaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpl-----------  220 (1202)
T KOG0292|consen  152 SASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPL-----------  220 (1202)
T ss_pred             EecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcce-----------
Confidence            88899999999998743322110  000         1112234332   11  124346655431000           


Q ss_pred             HHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeC-CEEEEeecCCCeEEEeeCCCCC
Q 018474          271 WELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFD-GNLYLASLQSNFIGILPLDGPE  349 (355)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~-g~L~v~~~~~~~i~~~~~~~~~  349 (355)
                                   +..-.++..--+++++. +..+..  ..-.|. .++++++.++. -+|-+++.....|.+.++..++
T Consensus       221 -------------iVSG~DDRqVKlWrmne-tKaWEv--DtcrgH-~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt  283 (1202)
T KOG0292|consen  221 -------------IVSGADDRQVKLWRMNE-TKAWEV--DTCRGH-YNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRT  283 (1202)
T ss_pred             -------------EEecCCcceeeEEEecc-ccceee--hhhhcc-cCCcceEEecCccceeEecCCCccEEEEeccccc
Confidence                         00000122234566665 322211  111232 55677777776 4577777777888888877765


Q ss_pred             C
Q 018474          350 P  350 (355)
Q Consensus       350 ~  350 (355)
                      +
T Consensus       284 ~  284 (1202)
T KOG0292|consen  284 S  284 (1202)
T ss_pred             c
Confidence            4

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=94.97  E-value=4  Score=40.76  Aligned_cols=205  Identities=12%  Similarity=0.124  Sum_probs=107.3

Q ss_pred             CEEEEEEcCCCeeEEeeccC-CC-cccCeEECCCCCEEEEeCCC-c------EEEEcC-CC-eEEEcCCcCCcccEEE-c
Q 018474           73 GWVKYFILHNETLVNWKHID-SQ-SLLGLTTTKDGGVILCDNEK-G------LLKVTE-EG-VEAIVPDASFTNDVIA-A  140 (355)
Q Consensus        73 g~i~~~~~~~g~~~~~~~~~-~~-p~~gl~~d~~g~L~v~~~~~-g------l~~~~~-~g-~~~~~~~~~~~~~l~~-d  140 (355)
                      ..+..+|+.++++...+... .+ -. +++.- +|.||++...+ |      +.+||+ ++ -+.++.-...=.++.+ .
T Consensus       301 ~~ve~yd~~~~~w~~~a~m~~~r~~~-~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~  378 (571)
T KOG4441|consen  301 RSVECYDPKTNEWSSLAPMPSPRCRV-GVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAV  378 (571)
T ss_pred             ceeEEecCCcCcEeecCCCCcccccc-cEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEE
Confidence            45678899888887765432 12 23 55553 67899875444 2      667774 33 3333322111111222 2


Q ss_pred             cCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccc--cccEEEeCCCCEEEEEeC------CCC
Q 018474          141 SDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYF--ANGIALSKNEDFVVVCES------WKF  212 (355)
Q Consensus       141 ~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~--pngi~~~~dg~~l~v~~~------~~~  212 (355)
                      =+|.||+.....            .......+-+|||.+.+++.+..-...  ..|++. -+| .+|++.-      .-.
T Consensus       379 l~g~iYavGG~d------------g~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~-~~g-~iYi~GG~~~~~~~l~  444 (571)
T KOG4441|consen  379 LDGKLYAVGGFD------------GEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAV-LGG-KLYIIGGGDGSSNCLN  444 (571)
T ss_pred             ECCEEEEEeccc------------cccccccEEEecCCCCcccccCCCCcceeeeEEEE-ECC-EEEEEcCcCCCccccc
Confidence            378898764431            001133689999999999877644322  223332 244 4888764      124


Q ss_pred             eEEEEEeCCCCCcceeEecccCCC--CcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCC
Q 018474          213 RCRRYWLKGDRAGILDAFIENLPG--GPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSD  290 (355)
Q Consensus       213 ~i~~~~~~~~~~~~~~~~~~~~~g--~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (355)
                      .+.+||+..+   ..+... .++.  .--+++.- +|.||+...-...                               .
T Consensus       445 sve~YDP~t~---~W~~~~-~M~~~R~~~g~a~~-~~~iYvvGG~~~~-------------------------------~  488 (571)
T KOG4441|consen  445 SVECYDPETN---TWTLIA-PMNTRRSGFGVAVL-NGKIYVVGGFDGT-------------------------------S  488 (571)
T ss_pred             eEEEEcCCCC---ceeecC-CcccccccceEEEE-CCEEEEECCccCC-------------------------------C
Confidence            5778887542   232222 1111  11234443 4678876543211                               1


Q ss_pred             CceEEEEEeCCCCeEEEEEEC-CCCCcccceeEEEEeCCEEEEe
Q 018474          291 AGARVVKVDGNDGKIIRDFND-PDATYISFVTSAAEFDGNLYLA  333 (355)
Q Consensus       291 ~~~~v~~~~~~~g~~~~~~~~-~~g~~~~~~~~~~~~~g~L~v~  333 (355)
                      ....|-+||| ....-..... ...   ....+++..+++||+.
T Consensus       489 ~~~~VE~ydp-~~~~W~~v~~m~~~---rs~~g~~~~~~~ly~v  528 (571)
T KOG4441|consen  489 ALSSVERYDP-ETNQWTMVAPMTSP---RSAVGVVVLGGKLYAV  528 (571)
T ss_pred             ccceEEEEcC-CCCceeEcccCccc---cccccEEEECCEEEEE
Confidence            1134889999 4443343332 111   1333566778888884

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=94.89  E-value=2.9  Score=38.02  Aligned_cols=39  Identities=18%  Similarity=0.154  Sum_probs=28.7

Q ss_pred             CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeec
Q 018474          132 SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE  187 (355)
Q Consensus       132 ~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~  187 (355)
                      ..+|++..+++|.+.++...                 ...|+++|+++|++.....
T Consensus       144 ~HiNsV~~~~~G~yLiS~R~-----------------~~~i~~I~~~tG~I~W~lg  182 (299)
T PF14269_consen  144 FHINSVDKDDDGDYLISSRN-----------------TSTIYKIDPSTGKIIWRLG  182 (299)
T ss_pred             cEeeeeeecCCccEEEEecc-----------------cCEEEEEECCCCcEEEEeC
Confidence            67788888888887776543                 4478889988888766543

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.84  E-value=2.8  Score=38.70  Aligned_cols=94  Identities=17%  Similarity=0.191  Sum_probs=61.0

Q ss_pred             ccccccCCCCeEEEEeCCCCeEEEeeccc--cccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCc
Q 018474          161 KDMAEGKPYGQLRKYDPKLKETTVLHEGF--YFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGP  238 (355)
Q Consensus       161 ~~~~~~~~~g~l~~~dp~~~~~~~~~~~~--~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p  238 (355)
                      +.+...+..+.+-.||+..++.-+..-.+  ..-..+++.|+++++|++++ .+.+..||.++.+....  +..+..|-+
T Consensus       217 ~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~-~g~l~~FD~r~~kl~g~--~~kg~tGsi  293 (412)
T KOG3881|consen  217 YKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNT-KGQLAKFDLRGGKLLGC--GLKGITGSI  293 (412)
T ss_pred             ceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecc-cchhheecccCceeecc--ccCCccCCc
Confidence            33444566678889999755433222111  11235678999999999886 57899999876543221  223455678


Q ss_pred             CceEECCCCCEEEEeecCC
Q 018474          239 DNINLAPDGSFWIGLIKMN  257 (355)
Q Consensus       239 ~~i~~d~~G~lwv~~~~~~  257 (355)
                      +.+...+.+.+..++.-.|
T Consensus       294 rsih~hp~~~~las~GLDR  312 (412)
T KOG3881|consen  294 RSIHCHPTHPVLASCGLDR  312 (412)
T ss_pred             ceEEEcCCCceEEeeccce
Confidence            8899988777877776544

>PHA02790 Kelch-like protein; Provisional

Probab=94.77  E-value=4.4  Score=39.55  Aligned_cols=168  Identities=5%  Similarity=-0.051  Sum_probs=87.8

Q ss_pred             CCeEEEEe-cC-----CEEEEEEcCCCeeEEeeccC-CCcccCeEECCCCCEEEEeCC---CcEEEEcC-CC-eEEEcCC
Q 018474           63 KGALYTAT-RD-----GWVKYFILHNETLVNWKHID-SQSLLGLTTTKDGGVILCDNE---KGLLKVTE-EG-VEAIVPD  130 (355)
Q Consensus        63 ~g~l~~~~-~~-----g~i~~~~~~~g~~~~~~~~~-~~p~~gl~~d~~g~L~v~~~~---~gl~~~~~-~g-~~~~~~~  130 (355)
                      ++.+|+.. .+     ..+.++|+.++++....... .+...+.+. -+|.||+....   ..+.++++ ++ .+.++.-
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~-~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l  349 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP-ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL  349 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE-ECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence            55677632 21     35789999888887765332 121102332 47899987532   23667774 44 4443332


Q ss_pred             c-CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccc-cccccEEEeCCCCEEEEEe
Q 018474          131 A-SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGF-YFANGIALSKNEDFVVVCE  208 (355)
Q Consensus       131 ~-~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~-~~pngi~~~~dg~~l~v~~  208 (355)
                      . ..-...++.-+|.||+.....             .. ...+.+|||++++++....-. ......+..-++ .+|+..
T Consensus       350 ~~~r~~~~~~~~~g~IYviGG~~-------------~~-~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~-~IYv~G  414 (480)
T PHA02790        350 LKPRCNPAVASINNVIYVIGGHS-------------ET-DTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGR-RLFLVG  414 (480)
T ss_pred             CCCCcccEEEEECCEEEEecCcC-------------CC-CccEEEEeCCCCEEEeCCCCCCccccceEEEECC-EEEEEC
Confidence            2 111223344578999874321             00 135778999999998654321 111122223455 488875


Q ss_pred             CCCCeEEEEEeCCCCCcceeEecccCCC--CcCceEECCCCCEEEEee
Q 018474          209 SWKFRCRRYWLKGDRAGILDAFIENLPG--GPDNINLAPDGSFWIGLI  254 (355)
Q Consensus       209 ~~~~~i~~~~~~~~~~~~~~~~~~~~~g--~p~~i~~d~~G~lwv~~~  254 (355)
                         +...+|+++.   .+.+... .++.  .--+++.- +|+|||..+
T Consensus       415 ---G~~e~ydp~~---~~W~~~~-~m~~~r~~~~~~v~-~~~IYviGG  454 (480)
T PHA02790        415 ---RNAEFYCESS---NTWTLID-DPIYPRDNPELIIV-DNKLLLIGG  454 (480)
T ss_pred             ---CceEEecCCC---CcEeEcC-CCCCCccccEEEEE-CCEEEEECC
Confidence               3467788743   3333332 2221  11223332 468888754

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=94.70  E-value=2.8  Score=36.91  Aligned_cols=148  Identities=13%  Similarity=0.087  Sum_probs=93.1

Q ss_pred             eEecCCCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccC---CCcccCeEECCCCCEEEEeCC-CcEEEE
Q 018474           44 TKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHID---SQSLLGLTTTKDGGVILCDNE-KGLLKV  119 (355)
Q Consensus        44 ~~~~~~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~---~~p~~gl~~d~~g~L~v~~~~-~gl~~~  119 (355)
                      ..+.++.-..-.++++.|.+..|-+++.+..+..+...+++++-.....   +... ++++.++|++..+... +.+...
T Consensus        54 ~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK-~Vaws~sG~~LATCSRDKSVWiW  132 (312)
T KOG0645|consen   54 TVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVK-CVAWSASGNYLATCSRDKSVWIW  132 (312)
T ss_pred             EeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeecccccee-EEEEcCCCCEEEEeeCCCeEEEE
Confidence            3455565677889999988888888899998888888788877665443   3467 8999999987765443 444444


Q ss_pred             --cCCC-eEE---EcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccc---c
Q 018474          120 --TEEG-VEA---IVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGF---Y  190 (355)
Q Consensus       120 --~~~g-~~~---~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~---~  190 (355)
                        +.++ ++.   +......+-.++..|.-.|.|+-+.               ..+-++|+.++ ...+...+.-.   .
T Consensus       133 e~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SY---------------DnTIk~~~~~~-dddW~c~~tl~g~~~  196 (312)
T KOG0645|consen  133 EIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSY---------------DNTIKVYRDED-DDDWECVQTLDGHEN  196 (312)
T ss_pred             EecCCCcEEEEeeeccccccccEEEEcCCcceeEEecc---------------CCeEEEEeecC-CCCeeEEEEecCccc
Confidence              3333 433   3333356666778776667666443               12345666665 45554433211   1


Q ss_pred             ccccEEEeCCCCEEEEEe
Q 018474          191 FANGIALSKNEDFVVVCE  208 (355)
Q Consensus       191 ~pngi~~~~dg~~l~v~~  208 (355)
                      .--.++|++.|..+.-+.
T Consensus       197 TVW~~~F~~~G~rl~s~s  214 (312)
T KOG0645|consen  197 TVWSLAFDNIGSRLVSCS  214 (312)
T ss_pred             eEEEEEecCCCceEEEec
Confidence            234678889887554443

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=94.66  E-value=2.6  Score=36.40  Aligned_cols=117  Identities=12%  Similarity=0.124  Sum_probs=75.0

Q ss_pred             CeEECCCCCEEEEeCCCcEEEEc-C-CC--eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEE
Q 018474           98 GLTTTKDGGVILCDNEKGLLKVT-E-EG--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLR  173 (355)
Q Consensus        98 gl~~d~~g~L~v~~~~~gl~~~~-~-~g--~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~  173 (355)
                      ...+..+|+--++......+++. + .|  ++++......+-+++...|+.=+.+-                 .....++
T Consensus        22 avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~-----------------GgDk~v~   84 (307)
T KOG0316|consen   22 AVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASC-----------------GGDKAVQ   84 (307)
T ss_pred             EEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccC-----------------CCCceEE
Confidence            56666777766665555666664 4 56  67666554556666655554322221                 1234688


Q ss_pred             EEeCCCCeEEE-eeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecc
Q 018474          174 KYDPKLKETTV-LHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIE  232 (355)
Q Consensus       174 ~~dp~~~~~~~-~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~  232 (355)
                      .||-+||++.. +......-|.+.+..+. .++++.+....+..||-.....+..+++.+
T Consensus        85 vwDV~TGkv~Rr~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~ePiQilde  143 (307)
T KOG0316|consen   85 VWDVNTGKVDRRFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSFEPIQILDE  143 (307)
T ss_pred             EEEcccCeeeeecccccceeeEEEecCcc-eEEEeccccceeEEEEcccCCCCccchhhh
Confidence            99999997643 34445667889997655 588888888889999986655555555543

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=94.61  E-value=1  Score=41.77  Aligned_cols=125  Identities=9%  Similarity=0.076  Sum_probs=75.6

Q ss_pred             EEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCCCcEEEEc-CCC--eEEEcCC-c---CCcccE
Q 018474           66 LYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEKGLLKVT-EEG--VEAIVPD-A---SFTNDV  137 (355)
Q Consensus        66 l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~~gl~~~~-~~g--~~~~~~~-~---~~~~~l  137 (355)
                      +..+..++.|..+|..+++...-...++... ++....+|+ |..+...+-+-.++ .+.  ...+... .   ...+.+
T Consensus       315 ~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vt-Sl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrv  393 (459)
T KOG0288|consen  315 VISGHFDKKVRFWDIRSADKTRSVPLGGRVT-SLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRV  393 (459)
T ss_pred             eeecccccceEEEeccCCceeeEeecCccee-eEeeccCCeEEeeecCCCceeeeecccccEEEEeecccccccccccee
Confidence            3445568888888876666555455566666 777777775 44443223334444 222  3333222 1   456778


Q ss_pred             EEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccc---cccEEEeCCCCEEEEEe
Q 018474          138 IAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYF---ANGIALSKNEDFVVVCE  208 (355)
Q Consensus       138 ~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~---pngi~~~~dg~~l~v~~  208 (355)
                      +++|+|.+..+.+.                 .|.+|.|+..+++.+........   .+.+++++-|..+.-++
T Consensus       394 vfSpd~~YvaAGS~-----------------dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsad  450 (459)
T KOG0288|consen  394 VFSPDGSYVAAGSA-----------------DGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSAD  450 (459)
T ss_pred             EECCCCceeeeccC-----------------CCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhccc
Confidence            89999876665443                 78999999999988766433221   23456667666555544

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=94.53  E-value=2.9  Score=36.32  Aligned_cols=71  Identities=14%  Similarity=0.113  Sum_probs=49.6

Q ss_pred             CCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeecc-CCCcccCeEE-CCCCCEEEEeCCCcEEEEc--CCC
Q 018474           51 VNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI-DSQSLLGLTT-TKDGGVILCDNEKGLLKVT--EEG  123 (355)
Q Consensus        51 ~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~-~~~p~~gl~~-d~~g~L~v~~~~~gl~~~~--~~g  123 (355)
                      +..-.+|-.||+.+.++.+..|+.++.+|.++|+++..... ....+ .++. ..++.++-+. .+|..|+-  +++
T Consensus       114 vPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH-~vv~R~~~~qilsG~-EDGtvRvWd~kt~  188 (325)
T KOG0649|consen  114 VPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVH-SVVGRNANGQILSGA-EDGTVRVWDTKTQ  188 (325)
T ss_pred             CCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceee-eeeecccCcceeecC-CCccEEEEecccc
Confidence            44456889998899999888999999999999998865432 23355 5554 4566666553 45666664  454

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.51  E-value=2.7  Score=37.44  Aligned_cols=117  Identities=17%  Similarity=0.166  Sum_probs=66.0

Q ss_pred             EEeCCCCEEEEEeCC----CCeEEEEEeCCC--CCcceeEecccCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchh
Q 018474          196 ALSKNEDFVVVCESW----KFRCRRYWLKGD--RAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCRE  269 (355)
Q Consensus       196 ~~~~dg~~l~v~~~~----~~~i~~~~~~~~--~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~  269 (355)
                      ++|+||+.||.+|-.    ++-|-.|+.+..  +.+++..+    .--|..+..-.||+..|..+++--.       .|.
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~----GiGpHev~lm~DGrtlvvanGGIet-------hpd  188 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTH----GIGPHEVTLMADGRTLVVANGGIET-------HPD  188 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccC----CcCcceeEEecCCcEEEEeCCceec-------ccc
Confidence            689999999999853    445667776421  12222211    1127778888999988887764211       110


Q ss_pred             H-HHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEE-EeCCEEEEeec
Q 018474          270 K-WELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAA-EFDGNLYLASL  335 (355)
Q Consensus       270 ~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~-~~~g~L~v~~~  335 (355)
                      . |..+ .|       .   ..+ ..+..+|..+|+.++...-|..+....+.-+. ..+|++|+|..
T Consensus       189 fgR~~l-Nl-------d---sMe-PSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQ  244 (366)
T COG3490         189 FGRTEL-NL-------D---SME-PSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQ  244 (366)
T ss_pred             cCcccc-ch-------h---hcC-ccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEE
Confidence            0 0000 00       0   011 23667784499998888777443222333333 34699999864

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=94.51  E-value=2.8  Score=39.55  Aligned_cols=164  Identities=10%  Similarity=0.066  Sum_probs=84.9

Q ss_pred             CCCCCCceEEEeeCCCeEEEEecCCEEEEEEc-------CCCee---EEeeccCCCcccCeEECCC---CCEEEEeCCCc
Q 018474           49 GCVNHPEDVSVVVSKGALYTATRDGWVKYFIL-------HNETL---VNWKHIDSQSLLGLTTTKD---GGVILCDNEKG  115 (355)
Q Consensus        49 ~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~-------~~g~~---~~~~~~~~~p~~gl~~d~~---g~L~v~~~~~g  115 (355)
                      ..++.-.+|.+..++..++.++.||.|..+..       .++..   ..|....-.+. .|..+..   .+||-+.- +.
T Consensus       121 aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsIT-Dl~ig~Gg~~~rl~TaS~-D~  198 (476)
T KOG0646|consen  121 AHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSIT-DLQIGSGGTNARLYTASE-DR  198 (476)
T ss_pred             hhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeE-EEEecCCCccceEEEecC-Cc
Confidence            45677788888844555666788998877753       12111   12222122233 5555533   35665543 34


Q ss_pred             EEEE-c-CCC--eEEEcCCcCCcccEEEccCC-cEEEEeCCCCCCCccccccccccCC--CCeE--EEEeCCCCeEEEee
Q 018474          116 LLKV-T-EEG--VEAIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKP--YGQL--RKYDPKLKETTVLH  186 (355)
Q Consensus       116 l~~~-~-~~g--~~~~~~~~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~--~g~l--~~~dp~~~~~~~~~  186 (355)
                      ..++ + ..|  +..+..+ ..++++++||-+ .+|++...++....     .+...+  ..++  -.+++...++..+.
T Consensus       199 t~k~wdlS~g~LLlti~fp-~si~av~lDpae~~~yiGt~~G~I~~~-----~~~~~~~~~~~v~~k~~~~~~t~~~~~~  272 (476)
T KOG0646|consen  199 TIKLWDLSLGVLLLTITFP-SSIKAVALDPAERVVYIGTEEGKIFQN-----LLFKLSGQSAGVNQKGRHEENTQINVLV  272 (476)
T ss_pred             eEEEEEeccceeeEEEecC-CcceeEEEcccccEEEecCCcceEEee-----ehhcCCcccccccccccccccceeeeec
Confidence            4444 4 245  3333222 578999999977 67777654221110     001110  0001  11222222333332


Q ss_pred             ccc--cccccEEEeCCCCEEEEEeCCCCeEEEEEeCC
Q 018474          187 EGF--YFANGIALSKNEDFVVVCESWKFRCRRYWLKG  221 (355)
Q Consensus       187 ~~~--~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~  221 (355)
                      .+-  ..-..++++-||. ++++....+.+..+++..
T Consensus       273 Gh~~~~~ITcLais~Dgt-lLlSGd~dg~VcvWdi~S  308 (476)
T KOG0646|consen  273 GHENESAITCLAISTDGT-LLLSGDEDGKVCVWDIYS  308 (476)
T ss_pred             cccCCcceeEEEEecCcc-EEEeeCCCCCEEEEecch
Confidence            221  2345788999997 666666678888888743

>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A

Probab=94.46  E-value=0.21  Score=43.11  Aligned_cols=119  Identities=18%  Similarity=0.197  Sum_probs=63.5

Q ss_pred             cCceEecCCCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEee---------ccCCCcccCeEECCCCCEEEEe
Q 018474           41 KGLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWK---------HIDSQSLLGLTTTKDGGVILCD  111 (355)
Q Consensus        41 ~~~~~~~~~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~---------~~~~~p~~gl~~d~~g~L~v~~  111 (355)
                      ...++|..+....=..|+++ ..|.||.-+.+|.++|..+.+.....|.         ..-+... .+.++++|-||.-+
T Consensus        70 ~~~~~Ig~g~W~~F~~i~~d-~~G~LYaV~~~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~-~vfa~~~GvLY~i~  147 (229)
T PF14517_consen   70 SGSKQIGDGGWNSFKFIFFD-PTGVLYAVTPDGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFD-AVFAGPNGVLYAIT  147 (229)
T ss_dssp             HH-EEEE-S-GGG-SEEEE--TTS-EEEEETT-EEEEES---STT--HHH-HSEEEE-SSGGGEE-EEEE-TTS-EEEEE
T ss_pred             ccCcccccCcccceeEEEec-CCccEEEeccccceeeccCCCccCcchhhccceecccCCCccce-EEEeCCCccEEEEc
Confidence            34577887744444599999 8999999999999988865333222221         1112344 67889999999998


Q ss_pred             CCCcEEEEc-CCC-------eEEEcC-C-cCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCC
Q 018474          112 NEKGLLKVT-EEG-------VEAIVP-D-ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKL  179 (355)
Q Consensus       112 ~~~gl~~~~-~~g-------~~~~~~-~-~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~  179 (355)
                      ..+.+++.. +++       .+.+.. . -.....|...++|+||..++                  .|.|||+.+.+
T Consensus       148 ~dg~~~~~~~p~~~~~~W~~~s~~v~~~gw~~~~~i~~~~~g~L~~V~~------------------~G~lyr~~~p~  207 (229)
T PF14517_consen  148 PDGRLYRRYRPDGGSDRWLSGSGLVGGGGWDSFHFIFFSPDGNLWAVKS------------------NGKLYRGRPPQ  207 (229)
T ss_dssp             TTE-EEEE---SSTT--HHHH-EEEESSSGGGEEEEEE-TTS-EEEE-E------------------TTEEEEES---
T ss_pred             CCCceEEeCCCCCCCCccccccceeccCCcccceEEeeCCCCcEEEEec------------------CCEEeccCCcc
Confidence            665577774 322       122222 1 14466678889999997633                  56789887644

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.40  E-value=0.6  Score=42.89  Aligned_cols=97  Identities=10%  Similarity=0.119  Sum_probs=61.1

Q ss_pred             CCceEEEeeC--CCeEEEEecCCEEEEEEcCCCe--eEEeeccCCCcccCeEECCCCC-EEEEeCCCcEEEEcC-CC--e
Q 018474           53 HPEDVSVVVS--KGALYTATRDGWVKYFILHNET--LVNWKHIDSQSLLGLTTTKDGG-VILCDNEKGLLKVTE-EG--V  124 (355)
Q Consensus        53 ~p~~i~~d~~--~g~l~~~~~~g~i~~~~~~~g~--~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~~gl~~~~~-~g--~  124 (355)
                      .+.++.+-+.  ...+..++..+.+..||+..++  +..+....+... .+..+++|+ +|+++..+.+..+|- .+  .
T Consensus       204 W~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is-~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~  282 (412)
T KOG3881|consen  204 WITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPIS-STGLTPSGNFIYTGNTKGQLAKFDLRGGKLL  282 (412)
T ss_pred             eeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcce-eeeecCCCcEEEEecccchhheecccCceee
Confidence            3445555533  3456667778999999987553  223322233344 788888887 688887777888883 44  1


Q ss_pred             EE-EcCCcCCcccEEEccCCcEEEEeC
Q 018474          125 EA-IVPDASFTNDVIAASDGTLYFTVA  150 (355)
Q Consensus       125 ~~-~~~~~~~~~~l~~d~dG~ly~~d~  150 (355)
                      .. +..-...+.++..++.+.+..+..
T Consensus       283 g~~~kg~tGsirsih~hp~~~~las~G  309 (412)
T KOG3881|consen  283 GCGLKGITGSIRSIHCHPTHPVLASCG  309 (412)
T ss_pred             ccccCCccCCcceEEEcCCCceEEeec
Confidence            11 222227889999998887766543

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=94.39  E-value=5.9  Score=39.34  Aligned_cols=61  Identities=13%  Similarity=0.086  Sum_probs=41.0

Q ss_pred             CCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeecc-CCCcccCeEECCCCCEEEEeCCC
Q 018474           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI-DSQSLLGLTTTKDGGVILCDNEK  114 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~-~~~p~~gl~~d~~g~L~v~~~~~  114 (355)
                      ..-..+++.|++..|.++. +.+++.+|+.+|...+..+. ....+ .++...+|..+.....+
T Consensus        13 hci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVy-cVAys~dGkrFASG~aD   74 (1081)
T KOG1538|consen   13 HCINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVY-CVAYAKDGKRFASGSAD   74 (1081)
T ss_pred             cchheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEE-EEEEccCCceeccCCCc
Confidence            3456778886666666664 56799999988865443322 23467 88888888888765443

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=94.37  E-value=2.3  Score=37.24  Aligned_cols=94  Identities=12%  Similarity=0.141  Sum_probs=51.1

Q ss_pred             eEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEc--C-CC-eEEEcCCc
Q 018474           56 DVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT--E-EG-VEAIVPDA  131 (355)
Q Consensus        56 ~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~--~-~g-~~~~~~~~  131 (355)
                      -+.+.|+++.+-++..+..|.-+|.++-+...-....-..+ -+.+..++.+++.+.+.|.+.+-  + -. +..+....
T Consensus       111 ~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~n-e~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~  189 (313)
T KOG1407|consen  111 NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVN-EISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHP  189 (313)
T ss_pred             EEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceee-eeeecCCCCEEEEecCCceEEEEeccccccccccccCC
Confidence            34455555555556666666666664443322111111233 56666778899988876755443  2 22 33333332


Q ss_pred             CCcccEEEccCCcEEEEeC
Q 018474          132 SFTNDVIAASDGTLYFTVA  150 (355)
Q Consensus       132 ~~~~~l~~d~dG~ly~~d~  150 (355)
                      ..--.+.+||+|+.+.+.+
T Consensus       190 snCicI~f~p~GryfA~Gs  208 (313)
T KOG1407|consen  190 SNCICIEFDPDGRYFATGS  208 (313)
T ss_pred             cceEEEEECCCCceEeecc
Confidence            3333466889998776544

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=94.30  E-value=1.6  Score=41.57  Aligned_cols=83  Identities=12%  Similarity=0.159  Sum_probs=50.1

Q ss_pred             CCeEEEEeCCCCeEEEe-eccccc-cccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCC
Q 018474          169 YGQLRKYDPKLKETTVL-HEGFYF-ANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPD  246 (355)
Q Consensus       169 ~g~l~~~dp~~~~~~~~-~~~~~~-pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~  246 (355)
                      .|.+..||..+..-..- ...... ..|||++|-+..|+++--...+|..||+...+....-. . ..|  -..+++.++
T Consensus       186 ~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y-~~P--lstvaf~~~  261 (673)
T KOG4378|consen  186 KGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-Y-SHP--LSTVAFSEC  261 (673)
T ss_pred             CCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee-e-cCC--cceeeecCC
Confidence            56777888643321111 111222 36999999988888887778899999985433222211 1 222  245778888


Q ss_pred             CCEEEEeec
Q 018474          247 GSFWIGLIK  255 (355)
Q Consensus       247 G~lwv~~~~  255 (355)
                      |.++++...
T Consensus       262 G~~L~aG~s  270 (673)
T KOG4378|consen  262 GTYLCAGNS  270 (673)
T ss_pred             ceEEEeecC
Confidence            977766543

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=94.29  E-value=0.23  Score=45.17  Aligned_cols=144  Identities=10%  Similarity=0.074  Sum_probs=86.1

Q ss_pred             ceEEEeeCCCeEEEEe-cCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCC-CcEEEEc-C--CC-eEEEc
Q 018474           55 EDVSVVVSKGALYTAT-RDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNE-KGLLKVT-E--EG-VEAIV  128 (355)
Q Consensus        55 ~~i~~d~~~g~l~~~~-~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~-~gl~~~~-~--~g-~~~~~  128 (355)
                      .++-+.|-...+..++ .++.|+.+|..+++..+-.....+++ +|++.+++-.|++... ..+|-+| .  .. +.+..
T Consensus       191 ~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN-~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~  269 (433)
T KOG0268|consen  191 SSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTN-TICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHK  269 (433)
T ss_pred             eEEecCCCcchheeeeccCCceEEEecccCCccceeeeecccc-ceecCccccceeeccccccceehhhhhhcccchhhc
Confidence            5555664444444443 68899999998887654333456788 9999997766665444 4588887 2  22 44444


Q ss_pred             CCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEE-Eee-ccccccccEEEeCCCCEEEE
Q 018474          129 PDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT-VLH-EGFYFANGIALSKNEDFVVV  206 (355)
Q Consensus       129 ~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~-~~~-~~~~~pngi~~~~dg~~l~v  206 (355)
                      +..+.+.++.++|-|+=+++.+-               ..+-+||..+-  +.-+ .+. ...+.--++.+|-|.+ .++
T Consensus       270 dhvsAV~dVdfsptG~Efvsgsy---------------DksIRIf~~~~--~~SRdiYhtkRMq~V~~Vk~S~Dsk-yi~  331 (433)
T KOG0268|consen  270 DHVSAVMDVDFSPTGQEFVSGSY---------------DKSIRIFPVNH--GHSRDIYHTKRMQHVFCVKYSMDSK-YII  331 (433)
T ss_pred             ccceeEEEeccCCCcchhccccc---------------cceEEEeecCC--CcchhhhhHhhhheeeEEEEecccc-EEE
Confidence            44467888889999987776543               11234444442  2211 111 1123345678888877 455


Q ss_pred             EeCCCCeEEEE
Q 018474          207 CESWKFRCRRY  217 (355)
Q Consensus       207 ~~~~~~~i~~~  217 (355)
                      +.+....|..|
T Consensus       332 SGSdd~nvRlW  342 (433)
T KOG0268|consen  332 SGSDDGNVRLW  342 (433)
T ss_pred             ecCCCcceeee
Confidence            66655555444

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=94.29  E-value=1.1  Score=46.12  Aligned_cols=97  Identities=18%  Similarity=0.103  Sum_probs=64.5

Q ss_pred             CCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEee-ccCCCcccCeEECCCCCEEEEeCCCcEEEEc---CCC-eEE
Q 018474           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWK-HIDSQSLLGLTTTKDGGVILCDNEKGLLKVT---EEG-VEA  126 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~-~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~---~~g-~~~  126 (355)
                      ..-.++.++|++-.|...+.++.|..++..+.+..... ...+.+. |+.+|+-|+.+.....++.+++.   ..| .+.
T Consensus       130 ~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VK-Gvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~  208 (942)
T KOG0973|consen  130 SDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVK-GVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKS  208 (942)
T ss_pred             CccceeccCCCccEEEEecccceEEEEccccceeeeeeeccccccc-ceEECCccCeeeeecCCceEEEEEcccceeeEe
Confidence            34456778854444444566899999998776543332 2345678 99999999998888777755554   345 555


Q ss_pred             EcCCc------CCcccEEEccCCcEEEEe
Q 018474          127 IVPDA------SFTNDVIAASDGTLYFTV  149 (355)
Q Consensus       127 ~~~~~------~~~~~l~~d~dG~ly~~d  149 (355)
                      +..++      .+..-+..+|||....+-
T Consensus       209 It~pf~~~~~~T~f~RlSWSPDG~~las~  237 (942)
T KOG0973|consen  209 ITKPFEESPLTTFFLRLSWSPDGHHLASP  237 (942)
T ss_pred             eccchhhCCCcceeeecccCCCcCeecch
Confidence            55443      556667888999766543

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=94.26  E-value=4.1  Score=37.42  Aligned_cols=137  Identities=17%  Similarity=0.163  Sum_probs=84.7

Q ss_pred             eEEEEeCCCCeEE-EeeccccccccE-EEeCCCCEEEEEe---CCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECC
Q 018474          171 QLRKYDPKLKETT-VLHEGFYFANGI-ALSKNEDFVVVCE---SWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAP  245 (355)
Q Consensus       171 ~l~~~dp~~~~~~-~~~~~~~~pngi-~~~~dg~~l~v~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~  245 (355)
                      .+|.||-++-++- .+.+....|.|+ |+++.....|++-   +..+.|..|+...-  .....+ +...+----++++.
T Consensus       107 ~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl--~~v~~I-~aH~~~lAalafs~  183 (391)
T KOG2110|consen  107 SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL--QPVNTI-NAHKGPLAALAFSP  183 (391)
T ss_pred             cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccc--eeeeEE-EecCCceeEEEECC
Confidence            5899997654332 111222456654 5777665455543   34667888886432  222222 12222234477999


Q ss_pred             CCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEE--eCCCCeEEEEEECCCCCcccceeEE
Q 018474          246 DGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKV--DGNDGKIIRDFNDPDATYISFVTSA  323 (355)
Q Consensus       246 ~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~g~~~~~~~~~~g~~~~~~~~~  323 (355)
                      +|.+..+...                                    .|.|+|+  -| +|+.+..|.-  |...-.+.++
T Consensus       184 ~G~llATASe------------------------------------KGTVIRVf~v~-~G~kl~eFRR--G~~~~~IySL  224 (391)
T KOG2110|consen  184 DGTLLATASE------------------------------------KGTVIRVFSVP-EGQKLYEFRR--GTYPVSIYSL  224 (391)
T ss_pred             CCCEEEEecc------------------------------------CceEEEEEEcC-CccEeeeeeC--CceeeEEEEE
Confidence            9987776543                                    3567766  35 8888777754  5445567778


Q ss_pred             EEeC-CEEEEeecCCCeEEEeeCCCCC
Q 018474          324 AEFD-GNLYLASLQSNFIGILPLDGPE  349 (355)
Q Consensus       324 ~~~~-g~L~v~~~~~~~i~~~~~~~~~  349 (355)
                      .++. .++...+.....|..|+|....
T Consensus       225 ~Fs~ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  225 SFSPDSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             EECCCCCeEEEecCCCeEEEEEecccc
Confidence            8775 6666678889999999998876

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=94.22  E-value=1.7  Score=44.97  Aligned_cols=100  Identities=11%  Similarity=0.059  Sum_probs=65.6

Q ss_pred             CCCCceEEEeeCCCeEEEEecCCEEEEEEcCC----------C------eeEEee---ccCCCcccCeEECCCCCEEEEe
Q 018474           51 VNHPEDVSVVVSKGALYTATRDGWVKYFILHN----------E------TLVNWK---HIDSQSLLGLTTTKDGGVILCD  111 (355)
Q Consensus        51 ~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~----------g------~~~~~~---~~~~~p~~gl~~d~~g~L~v~~  111 (355)
                      ...-.|+.+.+++.+|+.|+.++-|..+....          |      +++.+.   ...+... .+.+++++.+.+.-
T Consensus        69 ~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~-Dv~Wsp~~~~lvS~  147 (942)
T KOG0973|consen   69 DGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVL-DVNWSPDDSLLVSV  147 (942)
T ss_pred             cCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccc-eeccCCCccEEEEe
Confidence            34556777887888888898887655554431          1      122111   1123466 78889999888866


Q ss_pred             CCC-cEEEEc-CCC--eEEEcCCcCCcccEEEccCCcEEEEeCC
Q 018474          112 NEK-GLLKVT-EEG--VEAIVPDASFTNDVIAASDGTLYFTVAS  151 (355)
Q Consensus       112 ~~~-gl~~~~-~~g--~~~~~~~~~~~~~l~~d~dG~ly~~d~~  151 (355)
                      ... .+..++ .+.  ++++......+-++.+||-|+.+.+-+.
T Consensus       148 s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsd  191 (942)
T KOG0973|consen  148 SLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSD  191 (942)
T ss_pred             cccceEEEEccccceeeeeeecccccccceEECCccCeeeeecC
Confidence            554 466666 343  6666666688999999999988776554

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=94.19  E-value=2.6  Score=37.80  Aligned_cols=188  Identities=11%  Similarity=0.075  Sum_probs=100.4

Q ss_pred             CCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeec-c---CCCcccCeEECCCCCEEEEeCCCcEEEEc-C-CC--
Q 018474           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH-I---DSQSLLGLTTTKDGGVILCDNEKGLLKVT-E-EG--  123 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~-~---~~~p~~gl~~d~~g~L~v~~~~~gl~~~~-~-~g--  123 (355)
                      .--.+|.++|.+..+.+++.-..+..+|.++-+--.-.. .   .+.+. .+...+.|+|||+.+.+|-+++. - .+  
T Consensus       217 ~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~-~V~Ys~t~~lYvTaSkDG~IklwDGVS~rC  295 (430)
T KOG0640|consen  217 EPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAIT-QVRYSSTGSLYVTASKDGAIKLWDGVSNRC  295 (430)
T ss_pred             ceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccccccee-EEEecCCccEEEEeccCCcEEeeccccHHH
Confidence            445688899888888888876666777765443221110 0   12344 67778999999998887766664 2 33  


Q ss_pred             eEEEcC--CcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCC--CCeEEEeeccccccccEEEeC
Q 018474          124 VEAIVP--DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPK--LKETTVLHEGFYFANGIALSK  199 (355)
Q Consensus       124 ~~~~~~--~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~--~~~~~~~~~~~~~pngi~~~~  199 (355)
                      ++.+..  ....+.+..+..+|+..++...      +....+||-.....+.+|...  +|+.. +...      ..|.-
T Consensus       296 v~t~~~AH~gsevcSa~Ftkn~kyiLsSG~------DS~vkLWEi~t~R~l~~YtGAg~tgrq~-~rtq------AvFNh  362 (430)
T KOG0640|consen  296 VRTIGNAHGGSEVCSAVFTKNGKYILSSGK------DSTVKLWEISTGRMLKEYTGAGTTGRQK-HRTQ------AVFNH  362 (430)
T ss_pred             HHHHHhhcCCceeeeEEEccCCeEEeecCC------cceeeeeeecCCceEEEEecCCcccchh-hhhh------hhhcC
Confidence            544432  1256777888899987776432      233344554433345566432  12111 1111      11222


Q ss_pred             CCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474          200 NEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       200 dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      .+.++++-+...+.+..|+-...  .....+.-+..+.++-+.-++.+-.++.+..
T Consensus       363 tEdyVl~pDEas~slcsWdaRta--dr~~l~slgHn~a~R~i~HSP~~p~FmTcsd  416 (430)
T KOG0640|consen  363 TEDYVLFPDEASNSLCSWDARTA--DRVALLSLGHNGAVRWIVHSPVEPAFMTCSD  416 (430)
T ss_pred             ccceEEccccccCceeeccccch--hhhhhcccCCCCCceEEEeCCCCCceeeecc
Confidence            33344454545566777765321  1111122133344555555555555555544

>PHA03098 kelch-like protein; Provisional

Probab=94.11  E-value=6.7  Score=38.81  Aligned_cols=134  Identities=9%  Similarity=-0.011  Sum_probs=69.9

Q ss_pred             EEEEEEcCCCeeEEeeccC-CC-cccCeEECCCCCEEEEeCCC------cEEEEcC-CC-eEEEcCCc-CCcccEEEccC
Q 018474           74 WVKYFILHNETLVNWKHID-SQ-SLLGLTTTKDGGVILCDNEK------GLLKVTE-EG-VEAIVPDA-SFTNDVIAASD  142 (355)
Q Consensus        74 ~i~~~~~~~g~~~~~~~~~-~~-p~~gl~~d~~g~L~v~~~~~------gl~~~~~-~g-~~~~~~~~-~~~~~l~~d~d  142 (355)
                      .++++|+.++++....... .+ -. +++. -+|+||+.....      .+.++++ ++ .+..+... ..-...+..-+
T Consensus       312 ~v~~yd~~~~~W~~~~~~~~~R~~~-~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~  389 (534)
T PHA03098        312 SVVSYDTKTKSWNKVPELIYPRKNP-GVTV-FNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVN  389 (534)
T ss_pred             cEEEEeCCCCeeeECCCCCcccccc-eEEE-ECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEEC
Confidence            5789999888887654322 11 12 3333 367899865321      2667774 44 44433221 11112223346


Q ss_pred             CcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecccc-ccccEEEeCCCCEEEEEeCC--------CCe
Q 018474          143 GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFY-FANGIALSKNEDFVVVCESW--------KFR  213 (355)
Q Consensus       143 G~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~-~pngi~~~~dg~~l~v~~~~--------~~~  213 (355)
                      |.||+......           .......+++|||.+++++....... ....-+..-++ .+|+..-.        -..
T Consensus       390 ~~iYv~GG~~~-----------~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~  457 (534)
T PHA03098        390 NLIYVIGGISK-----------NDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDG-KIYVIGGISYIDNIKVYNI  457 (534)
T ss_pred             CEEEEECCcCC-----------CCcccceEEEEeCCCCeeeecCCCCccccCceEEEECC-EEEEECCccCCCCCcccce
Confidence            78998643210           00113468999999999886543211 11111222344 47876521        123


Q ss_pred             EEEEEeCC
Q 018474          214 CRRYWLKG  221 (355)
Q Consensus       214 i~~~~~~~  221 (355)
                      +++|++..
T Consensus       458 v~~yd~~~  465 (534)
T PHA03098        458 VESYNPVT  465 (534)
T ss_pred             EEEecCCC
Confidence            88888754

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=93.96  E-value=2.2  Score=43.85  Aligned_cols=150  Identities=13%  Similarity=0.140  Sum_probs=91.5

Q ss_pred             CCCCCCceEEEeeCCCeEEEEec--CCEEEEEEcCCCee-EEeeccCCC-cccCeEECC------CCCEEEEeCCCcEEE
Q 018474           49 GCVNHPEDVSVVVSKGALYTATR--DGWVKYFILHNETL-VNWKHIDSQ-SLLGLTTTK------DGGVILCDNEKGLLK  118 (355)
Q Consensus        49 ~~~~~p~~i~~d~~~g~l~~~~~--~g~i~~~~~~~g~~-~~~~~~~~~-p~~gl~~d~------~g~L~v~~~~~gl~~  118 (355)
                      |....|..+..+..+..+.+-+.  ...|+++|.+.|++ ..|...... .. .++-+.      ...-|+|-..+++++
T Consensus       478 g~~~~P~k~mL~~~d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~-~~~p~~K~aqlt~e~tflGls~n~lfr  556 (794)
T PF08553_consen  478 GKNFTPKKAMLHDQDRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVV-DIAPDSKFAQLTNEQTFLGLSDNSLFR  556 (794)
T ss_pred             CcccCcchhhhhccccceEeecCCCCCceEEEecCCCcEEEEeecCCCccee-EecccccccccCCCceEEEECCCceEE
Confidence            44456777777655666665543  47899999999975 455332222 22 333321      235788888889999


Q ss_pred             EcC--CCeEEEcC---Cc---CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecccc
Q 018474          119 VTE--EGVEAIVP---DA---SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFY  190 (355)
Q Consensus       119 ~~~--~g~~~~~~---~~---~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~  190 (355)
                      +|+  .|-+.+..   ..   ..-.+++-+.+|.|-+++.                  .|.|-.||.-+...++..+++.
T Consensus       557 iDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~------------------~G~IRLyd~~g~~AKT~lp~lG  618 (794)
T PF08553_consen  557 IDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSN------------------KGDIRLYDRLGKRAKTALPGLG  618 (794)
T ss_pred             eccCCCCCceeeccccccccCCCceEEEecCCceEEEEeC------------------CCcEEeecccchhhhhcCCCCC
Confidence            994  44111111   11   4455677778888888753                  3556667754444445555655


Q ss_pred             cc-ccEEEeCCCCEEEEEeCCCCeEEEEEe
Q 018474          191 FA-NGIALSKNEDFVVVCESWKFRCRRYWL  219 (355)
Q Consensus       191 ~p-ngi~~~~dg~~l~v~~~~~~~i~~~~~  219 (355)
                      .| -||.++.||++++.+  ....|..++.
T Consensus       619 ~pI~~iDvt~DGkwilaT--c~tyLlLi~t  646 (794)
T PF08553_consen  619 DPIIGIDVTADGKWILAT--CKTYLLLIDT  646 (794)
T ss_pred             CCeeEEEecCCCcEEEEe--ecceEEEEEE
Confidence            55 689999999966554  3456766664

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=93.92  E-value=3.4  Score=40.70  Aligned_cols=149  Identities=12%  Similarity=0.073  Sum_probs=82.0

Q ss_pred             CceEEEeeCCCeEEE-EecCCEEEEEEcCCCeeEEee--------ccC----CCcccCeEECCCCCEEEEeCCCcEEEE-
Q 018474           54 PEDVSVVVSKGALYT-ATRDGWVKYFILHNETLVNWK--------HID----SQSLLGLTTTKDGGVILCDNEKGLLKV-  119 (355)
Q Consensus        54 p~~i~~d~~~g~l~~-~~~~g~i~~~~~~~g~~~~~~--------~~~----~~p~~gl~~d~~g~L~v~~~~~gl~~~-  119 (355)
                      -.+++.-.++..+++ |.-+++|+.+|..+|..+...        ...    ...+ +++....|.++|+....+.+++ 
T Consensus       120 Vkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siY-SLA~N~t~t~ivsGgtek~lr~w  198 (735)
T KOG0308|consen  120 VKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIY-SLAMNQTGTIIVSGGTEKDLRLW  198 (735)
T ss_pred             heeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcccee-eeecCCcceEEEecCcccceEEe
Confidence            345555324555554 445899999998777332111        011    1356 6777778888887655565555 


Q ss_pred             cC-CC--eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCC-eEEEeeccccccccE
Q 018474          120 TE-EG--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLK-ETTVLHEGFYFANGI  195 (355)
Q Consensus       120 ~~-~g--~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~-~~~~~~~~~~~pngi  195 (355)
                      ++ ++  +-.+......+..+.+++||+-.++.++                 .|.+-.||.... -+..+.-.-...-.+
T Consensus       199 Dprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS-----------------DgtIrlWdLgqQrCl~T~~vH~e~VWaL  261 (735)
T KOG0308|consen  199 DPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS-----------------DGTIRLWDLGQQRCLATYIVHKEGVWAL  261 (735)
T ss_pred             ccccccceeeeeccccceEEEEEcCCCCeEeecCC-----------------CceEEeeeccccceeeeEEeccCceEEE
Confidence            44 54  3333344467899999999976666554                 445555554211 111111000011223


Q ss_pred             EEeCCCCEEEEEeCCCCeEEEEEeCC
Q 018474          196 ALSKNEDFVVVCESWKFRCRRYWLKG  221 (355)
Q Consensus       196 ~~~~dg~~l~v~~~~~~~i~~~~~~~  221 (355)
                      ..+++=..+|..+. .+.|++-++..
T Consensus       262 ~~~~sf~~vYsG~r-d~~i~~Tdl~n  286 (735)
T KOG0308|consen  262 QSSPSFTHVYSGGR-DGNIYRTDLRN  286 (735)
T ss_pred             eeCCCcceEEecCC-CCcEEecccCC
Confidence            44455556666654 46788877754

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=93.90  E-value=0.31  Score=29.53  Aligned_cols=40  Identities=23%  Similarity=0.246  Sum_probs=28.1

Q ss_pred             CC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEe
Q 018474          142 DG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALS  198 (355)
Q Consensus       142 dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~  198 (355)
                      +| .||+++..                 .+.+..+|+.+++..........|.+++++
T Consensus         2 d~~~lyv~~~~-----------------~~~v~~id~~~~~~~~~i~vg~~P~~i~~~   42 (42)
T TIGR02276         2 DGTKLYVTNSG-----------------SNTVSVIDTATNKVIATIPVGGYPFGVAVS   42 (42)
T ss_pred             CCCEEEEEeCC-----------------CCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence            44 69998755                 567888999877665444445678888764

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.87  E-value=9  Score=39.47  Aligned_cols=131  Identities=13%  Similarity=0.238  Sum_probs=79.3

Q ss_pred             CCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCe-eEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEcCCCeEEE
Q 018474           49 GCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNET-LVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEEGVEAI  127 (355)
Q Consensus        49 ~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~-~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~~g~~~~  127 (355)
                      |....-.++.++|..+.+...++|+.|..+|....+ .+.+.....+-. .++..+..+||.+.+..|...+--+.    
T Consensus       248 gH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW-~laahP~lNLfAAgHDsGm~VFkleR----  322 (1202)
T KOG0292|consen  248 GHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFW-ILAAHPELNLFAAGHDSGMIVFKLER----  322 (1202)
T ss_pred             cccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEE-EEEecCCcceeeeecCCceEEEEEcc----
Confidence            556667888999767777777789999999884433 345555566677 78888999999998887755543110    


Q ss_pred             cCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee--ccc----cccccEEEeCCC
Q 018474          128 VPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH--EGF----YFANGIALSKNE  201 (355)
Q Consensus       128 ~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~--~~~----~~pngi~~~~dg  201 (355)
                           ..-..++..++-+|+-+.                    .++.||-.+.+-..+.  ...    .-|..+...|.+
T Consensus       323 -----Erpa~~v~~n~LfYvkd~--------------------~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae  377 (1202)
T KOG0292|consen  323 -----ERPAYAVNGNGLFYVKDR--------------------FIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAE  377 (1202)
T ss_pred             -----cCceEEEcCCEEEEEccc--------------------eEEeeeccccccceeEeccCCCcccCCcceeeecccc
Confidence                 111234444444555421                    4666665443222221  111    224567788887


Q ss_pred             CEEEEEeC
Q 018474          202 DFVVVCES  209 (355)
Q Consensus       202 ~~l~v~~~  209 (355)
                      +.+.++..
T Consensus       378 ~~vlics~  385 (1202)
T KOG0292|consen  378 NAVLICSN  385 (1202)
T ss_pred             CeEEEEec
Confidence            77777743

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=93.82  E-value=6.5  Score=37.71  Aligned_cols=120  Identities=20%  Similarity=0.191  Sum_probs=65.9

Q ss_pred             EEEEc-CCC-eEEEcCCcCCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecccccc
Q 018474          116 LLKVT-EEG-VEAIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFA  192 (355)
Q Consensus       116 l~~~~-~~g-~~~~~~~~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~p  192 (355)
                      ++.++ .+| ...+......-..-.+.||| +|-|+...               ...-.+|.+|..++....+.+.....
T Consensus       220 i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~r---------------dg~~~iy~~dl~~~~~~~Lt~~~gi~  284 (425)
T COG0823         220 IYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSR---------------DGSPDIYLMDLDGKNLPRLTNGFGIN  284 (425)
T ss_pred             EEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECC---------------CCCccEEEEcCCCCcceecccCCccc
Confidence            66666 345 33333321222334677888 45565433               11336899998877755543332222


Q ss_pred             ccEEEeCCCCEEEEEeCCCC--eEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEee
Q 018474          193 NGIALSKNEDFVVVCESWKF--RCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLI  254 (355)
Q Consensus       193 ngi~~~~dg~~l~v~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~  254 (355)
                      ..=.++|||+.++++....+  .|++++.++...... ++  .. +....-..++||+..+-..
T Consensus       285 ~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~ri-T~--~~-~~~~~p~~SpdG~~i~~~~  344 (425)
T COG0823         285 TSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRL-TF--SG-GGNSNPVWSPDGDKIVFES  344 (425)
T ss_pred             cCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEe-ec--cC-CCCcCccCCCCCCEEEEEe
Confidence            23368999998888765433  578888776533111 11  11 1122345678887666655

>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A

Probab=93.75  E-value=3.7  Score=35.52  Aligned_cols=155  Identities=16%  Similarity=0.099  Sum_probs=79.3

Q ss_pred             cCceEecCCCCCCCceEEEeeCCCeEEEEecCCEEEEEEcC-CC------eeEEeeccC-CCcccCeEECCCCCEEEEeC
Q 018474           41 KGLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILH-NE------TLVNWKHID-SQSLLGLTTTKDGGVILCDN  112 (355)
Q Consensus        41 ~~~~~~~~~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~-~g------~~~~~~~~~-~~p~~gl~~d~~g~L~v~~~  112 (355)
                      ..+.++..+ ...-..|+.. .++.||....+ .+++..+. ++      ..+++...+ ++=. .|.+|+.|-||..+.
T Consensus        24 ~~a~~iG~g-w~~~~~i~~~-P~g~lY~I~~~-~lY~~~~~~~~~~~~~~~~~~Ig~g~W~~F~-~i~~d~~G~LYaV~~   99 (229)
T PF14517_consen   24 DRAITIGSG-WNNFRDIAAG-PNGRLYAIRND-GLYRGSPSSSGGNTWDSGSKQIGDGGWNSFK-FIFFDPTGVLYAVTP   99 (229)
T ss_dssp             HHSEEEESS--TT-SEEEE--TTS-EEEEETT-EEEEES---STT--HHHH-EEEE-S-GGG-S-EEEE-TTS-EEEEET
T ss_pred             chhhhcCcc-ccccceEEEc-CCceEEEEECC-ceEEecCCccCcccccccCcccccCccccee-EEEecCCccEEEecc
Confidence            345677664 4667778888 68889987755 68887321 22      112322211 1223 688999999999887


Q ss_pred             CCcEEEEc-C-CC-e-------EEEc-CCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEE-eCCCC
Q 018474          113 EKGLLKVT-E-EG-V-------EAIV-PDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKY-DPKLK  180 (355)
Q Consensus       113 ~~gl~~~~-~-~g-~-------~~~~-~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~-dp~~~  180 (355)
                      .+.+++.. + ++ .       +.+. ..-+....+..+++|.||.-+..                  +.+++. .|...
T Consensus       100 ~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~~vfa~~~GvLY~i~~d------------------g~~~~~~~p~~~  161 (229)
T PF14517_consen  100 DGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFDAVFAGPNGVLYAITPD------------------GRLYRRYRPDGG  161 (229)
T ss_dssp             T-EEEEES---STT--HHH-HSEEEE-SSGGGEEEEEE-TTS-EEEEETT------------------E-EEEE---SST
T ss_pred             ccceeeccCCCccCcchhhccceecccCCCccceEEEeCCCccEEEEcCC------------------CceEEeCCCCCC
Confidence            76788887 2 32 1       3332 22255677889999999987643                  356666 44333


Q ss_pred             eEE-----Ee-e-ccccccccEEEeCCCCEEEEEeCCCCeEEEEEe
Q 018474          181 ETT-----VL-H-EGFYFANGIALSKNEDFVVVCESWKFRCRRYWL  219 (355)
Q Consensus       181 ~~~-----~~-~-~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~  219 (355)
                      .-+     .+ . .+-....-|.+++++. ||... ..+.|+|+..
T Consensus       162 ~~~W~~~s~~v~~~gw~~~~~i~~~~~g~-L~~V~-~~G~lyr~~~  205 (229)
T PF14517_consen  162 SDRWLSGSGLVGGGGWDSFHFIFFSPDGN-LWAVK-SNGKLYRGRP  205 (229)
T ss_dssp             T--HHHH-EEEESSSGGGEEEEEE-TTS--EEEE--ETTEEEEES-
T ss_pred             CCccccccceeccCCcccceEEeeCCCCc-EEEEe-cCCEEeccCC
Confidence            211     11 1 1222345678888886 66664 4567776653

>PHA02790 Kelch-like protein; Provisional

Probab=93.62  E-value=3.4  Score=40.37  Aligned_cols=123  Identities=7%  Similarity=0.026  Sum_probs=65.9

Q ss_pred             CCeEEEEec---CCEEEEEEcCCCeeEEeeccCC-CcccCeEECCCCCEEEEeCCC----cEEEEcC-CC-eEEEcCCc-
Q 018474           63 KGALYTATR---DGWVKYFILHNETLVNWKHIDS-QSLLGLTTTKDGGVILCDNEK----GLLKVTE-EG-VEAIVPDA-  131 (355)
Q Consensus        63 ~g~l~~~~~---~g~i~~~~~~~g~~~~~~~~~~-~p~~gl~~d~~g~L~v~~~~~----gl~~~~~-~g-~~~~~~~~-  131 (355)
                      ++.+|+...   ...+.++++.+++|........ +..-+.+ --+|+||+.....    .+.++++ +. -+..+... 
T Consensus       318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~-~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~  396 (480)
T PHA02790        318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVA-SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYY  396 (480)
T ss_pred             CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEE-EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCC
Confidence            567776322   2347788888888776543321 1110222 2478999964321    2556775 44 44433221 


Q ss_pred             CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccc--cccccEEEeCCCCEEEEEe
Q 018474          132 SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGF--YFANGIALSKNEDFVVVCE  208 (355)
Q Consensus       132 ~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~--~~pngi~~~~dg~~l~v~~  208 (355)
                      ......++.-+|.||+..                    |...+|||++++++.+..-.  ..-.+++.- +++ +|+..
T Consensus       397 ~r~~~~~~~~~~~IYv~G--------------------G~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~-~~~-IYviG  453 (480)
T PHA02790        397 PHYKSCALVFGRRLFLVG--------------------RNAEFYCESSNTWTLIDDPIYPRDNPELIIV-DNK-LLLIG  453 (480)
T ss_pred             ccccceEEEECCEEEEEC--------------------CceEEecCCCCcEeEcCCCCCCccccEEEEE-CCE-EEEEC
Confidence            111222334568899862                    34678999999998765321  112344443 443 77765

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=93.60  E-value=8.3  Score=38.21  Aligned_cols=150  Identities=10%  Similarity=0.036  Sum_probs=87.6

Q ss_pred             CCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEe-eccCCCcccCeEECCCCC-EEEEeCCCcEEEEc-CCC-e
Q 018474           49 GCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNW-KHIDSQSLLGLTTTKDGG-VILCDNEKGLLKVT-EEG-V  124 (355)
Q Consensus        49 ~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~-~~~~~~p~~gl~~d~~g~-L~v~~~~~gl~~~~-~~g-~  124 (355)
                      +.-..-|+|+|. ++++||....+|.|..+|+.+++.+.- ...++.+. .|+..+.+. +-|+...+-++.++ ..+ +
T Consensus        67 ~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IW-siai~p~~~~l~IgcddGvl~~~s~~p~~I  144 (691)
T KOG2048|consen   67 PEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIW-SIAINPENTILAIGCDDGVLYDFSIGPDKI  144 (691)
T ss_pred             CCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEecCCCccee-EEEeCCccceEEeecCCceEEEEecCCceE
Confidence            445678999999 899999999999999999988865543 33456678 888876665 55653332233333 233 2


Q ss_pred             --EEEcCCc-CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee----ccccc-cc---
Q 018474          125 --EAIVPDA-SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH----EGFYF-AN---  193 (355)
Q Consensus       125 --~~~~~~~-~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~----~~~~~-pn---  193 (355)
                        ++.-... ..+-++..+++|.=.++.                 ...|.+-.||..++..-.+.    .++.. -+   
T Consensus       145 ~~~r~l~rq~sRvLslsw~~~~~~i~~G-----------------s~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iV  207 (691)
T KOG2048|consen  145 TYKRSLMRQKSRVLSLSWNPTGTKIAGG-----------------SIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIV  207 (691)
T ss_pred             EEEeecccccceEEEEEecCCccEEEec-----------------ccCceEEEEEcCCCceEEEeeecccccccCCceEE
Confidence              2222222 567777888888633332                 22445777777665432211    12221 22   


Q ss_pred             -cEEEeCCCCEEEEEeCCCCeEEEEEe
Q 018474          194 -GIALSKNEDFVVVCESWKFRCRRYWL  219 (355)
Q Consensus       194 -gi~~~~dg~~l~v~~~~~~~i~~~~~  219 (355)
                       ++.+-.|+  .+++....+.|..+|.
T Consensus       208 WSv~~Lrd~--tI~sgDS~G~V~FWd~  232 (691)
T KOG2048|consen  208 WSVLFLRDS--TIASGDSAGTVTFWDS  232 (691)
T ss_pred             EEEEEeecC--cEEEecCCceEEEEcc
Confidence             33344554  3444445566666664

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=93.49  E-value=0.43  Score=28.87  Aligned_cols=41  Identities=10%  Similarity=0.148  Sum_probs=30.6

Q ss_pred             eCCCeEEEEec-CCEEEEEEcCCCeeEEeeccCCCcccCeEEC
Q 018474           61 VSKGALYTATR-DGWVKYFILHNETLVNWKHIDSQSLLGLTTT  102 (355)
Q Consensus        61 ~~~g~l~~~~~-~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d  102 (355)
                      |+++.||+++. .+.|..+|..+++...-...+..|. +|+++
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~-~i~~~   42 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPF-GVAVS   42 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCc-eEEeC
Confidence            35778999875 6889999998887665555566788 87764

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=93.41  E-value=5.2  Score=38.95  Aligned_cols=105  Identities=14%  Similarity=0.141  Sum_probs=62.6

Q ss_pred             eEEC-CCCCEEEEeCCCcEEEEc-CCC--eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEE
Q 018474           99 LTTT-KDGGVILCDNEKGLLKVT-EEG--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRK  174 (355)
Q Consensus        99 l~~d-~~g~L~v~~~~~gl~~~~-~~g--~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~  174 (355)
                      |+.+ +.-.||++..+..+||++ ..|  +..+......+|.+.+.+-..|..+                 |+..|.+-.
T Consensus       139 m~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~-----------------Gt~~g~VEf  201 (703)
T KOG2321|consen  139 MKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLAC-----------------GTEDGVVEF  201 (703)
T ss_pred             ccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEe-----------------cccCceEEE
Confidence            4444 334688888788899999 466  5544433345666666654444443                 333567778


Q ss_pred             EeCCCCeEEEee----c--------cccccccEEEeCCCCEEEEEeCCCCeEEEEEeCC
Q 018474          175 YDPKLKETTVLH----E--------GFYFANGIALSKNEDFVVVCESWKFRCRRYWLKG  221 (355)
Q Consensus       175 ~dp~~~~~~~~~----~--------~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~  221 (355)
                      |||.+++..-..    .        ....+..+.|+.||-.+ -+.+..+.++.||+..
T Consensus       202 wDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~-aVGts~G~v~iyDLRa  259 (703)
T KOG2321|consen  202 WDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHV-AVGTSTGSVLIYDLRA  259 (703)
T ss_pred             ecchhhhhheeeecccccCCCccccccCcceEEEecCCceeE-EeeccCCcEEEEEccc
Confidence            888766432111    1        01124567787777543 4456678899999854

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=93.39  E-value=6.6  Score=36.63  Aligned_cols=195  Identities=15%  Similarity=0.117  Sum_probs=92.5

Q ss_pred             ceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEe---eccCCCcccCeEECCCCCEEEEeCCCc---EEEEcCCC-eEEE
Q 018474           55 EDVSVVVSKGALYTATRDGWVKYFILHNETLVNW---KHIDSQSLLGLTTTKDGGVILCDNEKG---LLKVTEEG-VEAI  127 (355)
Q Consensus        55 ~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~---~~~~~~p~~gl~~d~~g~L~v~~~~~g---l~~~~~~g-~~~~  127 (355)
                      ..+.+-+..+.|..+..+..|..++...++....   ....+... .+.+|++++-.++..+++   ++.++... .+++
T Consensus       179 ~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it-~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TL  257 (459)
T KOG0288|consen  179 HDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNIT-SIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTL  257 (459)
T ss_pred             ceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcc-eeeecCCCceEEeecCCCceeeeeccchhhhhhh
Confidence            4455554447788877777777666544442222   11234566 899999998777665555   33333111 2222


Q ss_pred             cCCc--------CCcccEEEcc--CCc--EE------EEeCCCC-CCCccc---cccccccCCCCeEEEEeCCCCeEEEe
Q 018474          128 VPDA--------SFTNDVIAAS--DGT--LY------FTVASTK-YTPTDF---YKDMAEGKPYGQLRKYDPKLKETTVL  185 (355)
Q Consensus       128 ~~~~--------~~~~~l~~d~--dG~--ly------~~d~~~~-~~~~~~---~~~~~~~~~~g~l~~~dp~~~~~~~~  185 (355)
                      ....        ..-+.-+++.  |-+  +|      .+.+--. -.+.+.   ...++.+-....+-.||-.+...+.-
T Consensus       258 sGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~s  337 (459)
T KOG0288|consen  258 SGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRS  337 (459)
T ss_pred             cccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEecceeeeecccccceEEEeccCCceeeE
Confidence            2111        0001102221  111  11      1110000 000000   11122222234566677555544433


Q ss_pred             eccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEec-ccCCCC--cCceEECCCCCEEEEe
Q 018474          186 HEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFI-ENLPGG--PDNINLAPDGSFWIGL  253 (355)
Q Consensus       186 ~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~g~--p~~i~~d~~G~lwv~~  253 (355)
                      .+....-..+.++.+|..+..+ +..+.+..+++.+..+  ...|- ++.-.-  -.-.+++++|.|..+.
T Consensus       338 v~~gg~vtSl~ls~~g~~lLss-sRDdtl~viDlRt~eI--~~~~sA~g~k~asDwtrvvfSpd~~YvaAG  405 (459)
T KOG0288|consen  338 VPLGGRVTSLDLSMDGLELLSS-SRDDTLKVIDLRTKEI--RQTFSAEGFKCASDWTRVVFSPDGSYVAAG  405 (459)
T ss_pred             eecCcceeeEeeccCCeEEeee-cCCCceeeeecccccE--EEEeeccccccccccceeEECCCCceeeec
Confidence            3344455678889999888777 5667888888765432  22221 111100  1225688877654443

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=93.20  E-value=0.44  Score=29.26  Aligned_cols=40  Identities=20%  Similarity=0.335  Sum_probs=28.1

Q ss_pred             CcEEEEeCCCCCCCccccccccccCCCC-eEEEEeCCCCeEE-EeeccccccccEEEeC
Q 018474          143 GTLYFTVASTKYTPTDFYKDMAEGKPYG-QLRKYDPKLKETT-VLHEGFYFANGIALSK  199 (355)
Q Consensus       143 G~ly~~d~~~~~~~~~~~~~~~~~~~~g-~l~~~dp~~~~~~-~~~~~~~~pngi~~~~  199 (355)
                      |+||++|..                 .. .+.+-+.++...+ .+..++..|+||++++
T Consensus         1 ~~iYWtD~~-----------------~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~   42 (42)
T PF00058_consen    1 GKIYWTDWS-----------------QDPSIERANLDGSNRRTVISDDLQHPEGIAVDW   42 (42)
T ss_dssp             TEEEEEETT-----------------TTEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred             CEEEEEECC-----------------CCcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence            578999876                 23 5666666555544 4456789999999874

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats

Probab=93.17  E-value=0.11  Score=27.69  Aligned_cols=18  Identities=11%  Similarity=0.211  Sum_probs=11.0

Q ss_pred             CcccCeEECCCCCEEEEeC
Q 018474           94 QSLLGLTTTKDGGVILCDN  112 (355)
Q Consensus        94 ~p~~gl~~d~~g~L~v~~~  112 (355)
                      .+. +|..|++|+||+++.
T Consensus         6 ~I~-~i~~D~~G~lWigT~   23 (24)
T PF07494_consen    6 NIY-SIYEDSDGNLWIGTY   23 (24)
T ss_dssp             CEE-EEEE-TTSCEEEEET
T ss_pred             eEE-EEEEcCCcCEEEEeC
Confidence            345 667777777777663

These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=93.16  E-value=6.9  Score=35.95  Aligned_cols=53  Identities=13%  Similarity=0.077  Sum_probs=31.0

Q ss_pred             EEeeCCCeEEEEecCCEEEEEEcCCCeeEEeecc-CCCcccCeEECCCCCEEEEe
Q 018474           58 SVVVSKGALYTATRDGWVKYFILHNETLVNWKHI-DSQSLLGLTTTKDGGVILCD  111 (355)
Q Consensus        58 ~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~-~~~p~~gl~~d~~g~L~v~~  111 (355)
                      .+.|..-....++.++.|..+|..+|+....... ..... .+.+|..|++.+..
T Consensus       115 ~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~-di~~~a~Gk~l~tc  168 (406)
T KOG0295|consen  115 IFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVF-DISFDASGKYLATC  168 (406)
T ss_pred             eeccCceEEEEecCCceEEEEEccchhhhhhhhcccccee-EEEEecCccEEEec
Confidence            3453333444566788899999888877544322 12244 56666666555543

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=92.89  E-value=13  Score=38.48  Aligned_cols=123  Identities=9%  Similarity=0.010  Sum_probs=65.6

Q ss_pred             CCeEEEEecCCEEEEEEcCCCeeEE-eec--------c-CCCcc------cCeEECCCCCEEEEeC----------CCcE
Q 018474           63 KGALYTATRDGWVKYFILHNETLVN-WKH--------I-DSQSL------LGLTTTKDGGVILCDN----------EKGL  116 (355)
Q Consensus        63 ~g~l~~~~~~g~i~~~~~~~g~~~~-~~~--------~-~~~p~------~gl~~d~~g~L~v~~~----------~~gl  116 (355)
                      ++++|+++.+++|+.+|.++|+... +..        . +..+.      +.-.+ .++.++++..          .+.+
T Consensus       260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V-~~g~VIvG~~v~d~~~~~~~~G~I  338 (764)
T TIGR03074       260 ARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLV-AGTTVVIGGRVADNYSTDEPSGVI  338 (764)
T ss_pred             CCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEE-ECCEEEEEecccccccccCCCcEE
Confidence            4589999999999999999997542 111        0 01111      00111 2567888743          2237


Q ss_pred             EEEc-CCC-eEE--EcCCc--------------CCc---ccEEEccC-CcEEEEeCCCCCCCccccccccccCCCCeEEE
Q 018474          117 LKVT-EEG-VEA--IVPDA--------------SFT---NDVIAASD-GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRK  174 (355)
Q Consensus       117 ~~~~-~~g-~~~--~~~~~--------------~~~---~~l~~d~d-G~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~  174 (355)
                      ..+| .+| +.-  .....              ..+   ...+.|++ |.+|+......-...............+.++.
T Consensus       339 ~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvA  418 (764)
T TIGR03074       339 RAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVA  418 (764)
T ss_pred             EEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEE
Confidence            7788 477 221  11100              112   33577865 67888654321100000000112234678999


Q ss_pred             EeCCCCeEEEee
Q 018474          175 YDPKLKETTVLH  186 (355)
Q Consensus       175 ~dp~~~~~~~~~  186 (355)
                      .|++||+.+...
T Consensus       419 LD~~TGk~~W~~  430 (764)
T TIGR03074       419 LDATTGKERWVF  430 (764)
T ss_pred             EeCCCCceEEEe
Confidence            999999887554

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=92.71  E-value=7.2  Score=34.99  Aligned_cols=147  Identities=13%  Similarity=0.083  Sum_probs=84.8

Q ss_pred             CCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEcC-CC-eEEEcCC
Q 018474           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE-EG-VEAIVPD  130 (355)
Q Consensus        53 ~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~-~g-~~~~~~~  130 (355)
                      +-.++-+++..+.|.+++-+|.+..++......+.....+.... ..++..+-.+|+++..+.+.++|. ++ ...+...
T Consensus        15 ~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL-~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth   93 (323)
T KOG1036|consen   15 GISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLL-DCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGTH   93 (323)
T ss_pred             ceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCcee-eeeccCCceEEEeccCceEEEEEecCCcceeeccC
Confidence            44567777778889999999999888875544332222233334 666666778999987766778884 55 4444443


Q ss_pred             cCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccc-cEEEeCCCCEEEEEeC
Q 018474          131 ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFAN-GIALSKNEDFVVVCES  209 (355)
Q Consensus       131 ~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pn-gi~~~~dg~~l~v~~~  209 (355)
                      ...+..+.....-...+                 .+.+...+-.|||..... .  .....++ --+.+-.++.|+|.. 
T Consensus        94 ~~~i~ci~~~~~~~~vI-----------------sgsWD~~ik~wD~R~~~~-~--~~~d~~kkVy~~~v~g~~LvVg~-  152 (323)
T KOG1036|consen   94 DEGIRCIEYSYEVGCVI-----------------SGSWDKTIKFWDPRNKVV-V--GTFDQGKKVYCMDVSGNRLVVGT-  152 (323)
T ss_pred             CCceEEEEeeccCCeEE-----------------EcccCccEEEEecccccc-c--cccccCceEEEEeccCCEEEEee-
Confidence            33444444433222222                 234466777888764211 1  1111111 235555666677743 


Q ss_pred             CCCeEEEEEeCC
Q 018474          210 WKFRCRRYWLKG  221 (355)
Q Consensus       210 ~~~~i~~~~~~~  221 (355)
                      ...++..||+..
T Consensus       153 ~~r~v~iyDLRn  164 (323)
T KOG1036|consen  153 SDRKVLIYDLRN  164 (323)
T ss_pred             cCceEEEEEccc
Confidence            346788899854

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=92.64  E-value=5.3  Score=37.68  Aligned_cols=136  Identities=13%  Similarity=0.168  Sum_probs=70.1

Q ss_pred             EEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEc--CCC-e--EEEcCCc----------C
Q 018474           68 TATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG-V--EAIVPDA----------S  132 (355)
Q Consensus        68 ~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~--~~g-~--~~~~~~~----------~  132 (355)
                      ++..|..+..++..+..-..|...++.+. ++++=.+..+..+...+.|+..+  +.. +  ..++...          .
T Consensus       303 VGgrDrT~rlwKi~eesqlifrg~~~sid-cv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~  381 (479)
T KOG0299|consen  303 VGGRDRTVRLWKIPEESQLIFRGGEGSID-CVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNF  381 (479)
T ss_pred             eccccceeEEEeccccceeeeeCCCCCee-eEEEecccceeeccCCceEEEeeecccCceeEeeccccccCCcccccccc
Confidence            34345544444442332233333445566 66664444555554444454444  222 1  2222211          2


Q ss_pred             CcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee--ccccccccEEEeCCCCEEEEEeCC
Q 018474          133 FTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH--EGFYFANGIALSKNEDFVVVCESW  210 (355)
Q Consensus       133 ~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~--~~~~~pngi~~~~dg~~l~v~~~~  210 (355)
                      +++++++-+.-.|..+.+.               ...-+||.....-..+..+.  .-..+-|.++++++|+++++.--.
T Consensus       382 Witsla~i~~sdL~asGS~---------------~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGk  446 (479)
T KOG0299|consen  382 WITSLAVIPGSDLLASGSW---------------SGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGK  446 (479)
T ss_pred             ceeeeEecccCceEEecCC---------------CCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEeccc
Confidence            5666666655555554332               11224565554333444432  223567999999999988877666


Q ss_pred             CCeEEEEEe
Q 018474          211 KFRCRRYWL  219 (355)
Q Consensus       211 ~~~i~~~~~  219 (355)
                      .+++-|++.
T Consensus       447 EhRlGRW~~  455 (479)
T KOG0299|consen  447 EHRLGRWWC  455 (479)
T ss_pred             ccccceeeE
Confidence            778888775

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=92.53  E-value=4  Score=37.46  Aligned_cols=96  Identities=13%  Similarity=0.042  Sum_probs=60.2

Q ss_pred             CceEEEeeCCCeEEEEec-CCEEEEEEcCCCeeEEee-ccCCCcccCeEECCCCCEEEEeCCCcEEEEc-CCC---eEEE
Q 018474           54 PEDVSVVVSKGALYTATR-DGWVKYFILHNETLVNWK-HIDSQSLLGLTTTKDGGVILCDNEKGLLKVT-EEG---VEAI  127 (355)
Q Consensus        54 p~~i~~d~~~g~l~~~~~-~g~i~~~~~~~g~~~~~~-~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~-~~g---~~~~  127 (355)
                      -.+|.+.+++..|..++. +..|..+|+.+|+-..+. ...+... -+.+.+||..+++..-++++++- .+.   .+..
T Consensus       198 Vtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~s-lLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw  276 (445)
T KOG2139|consen  198 VTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFS-LLKWSPDGDVLFAATCDAVFRLWQENQSWTKERW  276 (445)
T ss_pred             eeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCcee-eEEEcCCCCEEEEecccceeeeehhcccceecce
Confidence            357777744444444444 567888999888766554 2233343 57889999877766667888886 332   2222


Q ss_pred             cCCcCCcccEEEccCC-cEEEEeC
Q 018474          128 VPDASFTNDVIAASDG-TLYFTVA  150 (355)
Q Consensus       128 ~~~~~~~~~l~~d~dG-~ly~~d~  150 (355)
                      .-....+..-+.+|.| .|.|+.+
T Consensus       277 ~lgsgrvqtacWspcGsfLLf~~s  300 (445)
T KOG2139|consen  277 ILGSGRVQTACWSPCGSFLLFACS  300 (445)
T ss_pred             eccCCceeeeeecCCCCEEEEEEc
Confidence            2222477788899999 4555544

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=92.52  E-value=7.9  Score=35.03  Aligned_cols=152  Identities=14%  Similarity=0.059  Sum_probs=77.0

Q ss_pred             CCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCe-----eEEeeccCCCcccCeEECCCCC-EEEEeCC-CcEEEE--
Q 018474           49 GCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNET-----LVNWKHIDSQSLLGLTTTKDGG-VILCDNE-KGLLKV--  119 (355)
Q Consensus        49 ~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~-----~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~-~gl~~~--  119 (355)
                      |.-..-.++++..++..|-..+.|+.|..++.++-.     ..+..-..++|. .+++.+|=+ +.|.-.. ..|+.|  
T Consensus        84 gH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT-~V~FapDc~s~vv~~~~g~~l~vyk~  162 (420)
T KOG2096|consen   84 GHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPT-RVVFAPDCKSVVVSVKRGNKLCVYKL  162 (420)
T ss_pred             ccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCce-EEEECCCcceEEEEEccCCEEEEEEe
Confidence            344556788898555556667778888888764421     111112234677 888877765 3333332 234443  


Q ss_pred             cC--CC-e--EEEcCC---c-----CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee
Q 018474          120 TE--EG-V--EAIVPD---A-----SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH  186 (355)
Q Consensus       120 ~~--~g-~--~~~~~~---~-----~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~  186 (355)
                      ++  +| .  ..+...   +     ..+.++-+. ++..|+...+                ....+..|+.++.-+..+-
T Consensus       163 ~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA-~~~k~imsas----------------~dt~i~lw~lkGq~L~~id  225 (420)
T KOG2096|consen  163 VKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIA-GNAKYIMSAS----------------LDTKICLWDLKGQLLQSID  225 (420)
T ss_pred             eecccCCCCcccccccccccchhcccceEEEeec-CCceEEEEec----------------CCCcEEEEecCCceeeeec
Confidence            42  45 2  111111   1     111122222 3334433322                1335777777644444443


Q ss_pred             ccccccccEEEeCCCCEEEEEeCCCCeEEEEEe
Q 018474          187 EGFYFANGIALSKNEDFVVVCESWKFRCRRYWL  219 (355)
Q Consensus       187 ~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~  219 (355)
                      .+...-.-.+++|+|+++.++.-. --+.+|.+
T Consensus       226 tnq~~n~~aavSP~GRFia~~gFT-pDVkVwE~  257 (420)
T KOG2096|consen  226 TNQSSNYDAAVSPDGRFIAVSGFT-PDVKVWEP  257 (420)
T ss_pred             cccccccceeeCCCCcEEEEecCC-CCceEEEE
Confidence            333334456899999987777643 34444443

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=92.48  E-value=5.9  Score=38.61  Aligned_cols=110  Identities=15%  Similarity=0.248  Sum_probs=63.7

Q ss_pred             ceEEEeeCCCeEEEEecCCEEEEEEcCCCeeE-EeeccCCCcccCeEECCCCCEEEEeCCCcEEEE-cC-CC--eEEEcC
Q 018474           55 EDVSVVVSKGALYTATRDGWVKYFILHNETLV-NWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKV-TE-EG--VEAIVP  129 (355)
Q Consensus        55 ~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~-~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~-~~-~g--~~~~~~  129 (355)
                      .+|..+...-.||++.....|||++.++|++. .+....+..+ .+-+.+...|+.+....|.+.+ |+ +.  +..+..
T Consensus       137 RDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN-~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~  215 (703)
T KOG2321|consen  137 RDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELN-VVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDA  215 (703)
T ss_pred             ccccccCCCccEEEeecCcceEEEEccccccccccccccccce-eeeecCccceEEecccCceEEEecchhhhhheeeec
Confidence            45566644555888777778999999999864 3333333344 5555555566665544555544 43 32  333211


Q ss_pred             C------c-----CCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEE
Q 018474          130 D------A-----SFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT  183 (355)
Q Consensus       130 ~------~-----~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~  183 (355)
                      .      +     ..+.++.++.+| ++=+                  |+.+|.++.||..+.+-.
T Consensus       216 ~~~v~s~pg~~~~~svTal~F~d~gL~~aV------------------Gts~G~v~iyDLRa~~pl  263 (703)
T KOG2321|consen  216 ASSVNSHPGGDAAPSVTALKFRDDGLHVAV------------------GTSTGSVLIYDLRASKPL  263 (703)
T ss_pred             ccccCCCccccccCcceEEEecCCceeEEe------------------eccCCcEEEEEcccCCce
Confidence            1      0     345556666655 3323                  455788999998766543

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=92.41  E-value=10  Score=36.05  Aligned_cols=140  Identities=15%  Similarity=0.123  Sum_probs=84.1

Q ss_pred             CcccCeEECCCCCEEEEeCCCcEEEEc-CCC--eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCC
Q 018474           94 QSLLGLTTTKDGGVILCDNEKGLLKVT-EEG--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYG  170 (355)
Q Consensus        94 ~p~~gl~~d~~g~L~v~~~~~gl~~~~-~~g--~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g  170 (355)
                      ... ++++..+|.+.+....+|..++. .+|  +..+...-.-+.+|-...+|+..++.+-                 .+
T Consensus       237 dVT-~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~v-----------------D~  298 (524)
T KOG0273|consen  237 DVT-SLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGV-----------------DG  298 (524)
T ss_pred             Ccc-eEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccC-----------------Cc
Confidence            456 89999999998887777877776 566  5555443344667777778876665332                 56


Q ss_pred             eEEEEeCCCCeEEEeecccccc-ccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCE
Q 018474          171 QLRKYDPKLKETTVLHEGFYFA-NGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSF  249 (355)
Q Consensus       171 ~l~~~dp~~~~~~~~~~~~~~p-ngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~l  249 (355)
                      ....||..+++......--..| -.+.+-.+  .-+++....++|+++.+...+  ...+|.. ..+-...+..++.|.+
T Consensus       299 ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~--~~F~ts~td~~i~V~kv~~~~--P~~t~~G-H~g~V~alk~n~tg~L  373 (524)
T KOG0273|consen  299 TTILWDAHTGTVKQQFEFHSAPALDVDWQSN--DEFATSSTDGCIHVCKVGEDR--PVKTFIG-HHGEVNALKWNPTGSL  373 (524)
T ss_pred             cEEEEeccCceEEEeeeeccCCccceEEecC--ceEeecCCCceEEEEEecCCC--cceeeec-ccCceEEEEECCCCce
Confidence            7888998888766543322223 11222222  234555567889988885432  2233442 3333445566666666


Q ss_pred             EEEeecC
Q 018474          250 WIGLIKM  256 (355)
Q Consensus       250 wv~~~~~  256 (355)
                      +.++...
T Consensus       374 LaS~SdD  380 (524)
T KOG0273|consen  374 LASCSDD  380 (524)
T ss_pred             EEEecCC
Confidence            6665543

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=92.28  E-value=6.4  Score=36.67  Aligned_cols=141  Identities=11%  Similarity=-0.039  Sum_probs=75.0

Q ss_pred             eEEEeeCCCeEEEEec--C---CEEEEEEcCCCeeEEeecc--CCC--cccCeEE---CCCCCEEEEeCC--CcEEEEcC
Q 018474           56 DVSVVVSKGALYTATR--D---GWVKYFILHNETLVNWKHI--DSQ--SLLGLTT---TKDGGVILCDNE--KGLLKVTE  121 (355)
Q Consensus        56 ~i~~d~~~g~l~~~~~--~---g~i~~~~~~~g~~~~~~~~--~~~--p~~gl~~---d~~g~L~v~~~~--~gl~~~~~  121 (355)
                      .+.+.+++..+++...  +   -.+..+|..+++.+.....  .+.  ....+.+   +.++-||+....  ..|+.++.
T Consensus       188 ~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~  267 (353)
T PF00930_consen  188 RVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDL  267 (353)
T ss_dssp             EEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEET
T ss_pred             cceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcc
Confidence            3445433433665432  1   2456677777654433211  111  1102332   223346666622  24888885


Q ss_pred             CC--eEEEcCCcCCccc-EEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCC-CCeEEEeeccccccccEE
Q 018474          122 EG--VEAIVPDASFTND-VIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPK-LKETTVLHEGFYFANGIA  196 (355)
Q Consensus       122 ~g--~~~~~~~~~~~~~-l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~-~~~~~~~~~~~~~pngi~  196 (355)
                      ++  .+.+......+++ +.+|+++ .|||+....             ......||+.+.+ +++.+.+......-..+.
T Consensus       268 ~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~-------------~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~  334 (353)
T PF00930_consen  268 DGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGD-------------NPGERHLYRVSLDSGGEPKCLTCEDGDHYSAS  334 (353)
T ss_dssp             TSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSG-------------GTTSBEEEEEETTETTEEEESSTTSSTTEEEE
T ss_pred             cccceeccccCceeecccceEcCCCCEEEEEecCC-------------CCCceEEEEEEeCCCCCeEeccCCCCCceEEE
Confidence            44  5666555444544 5678765 788875431             1224479999988 788877664433224789


Q ss_pred             EeCCCCEEEEEeC
Q 018474          197 LSKNEDFVVVCES  209 (355)
Q Consensus       197 ~~~dg~~l~v~~~  209 (355)
                      ++||++.+...-+
T Consensus       335 ~Spdg~y~v~~~s  347 (353)
T PF00930_consen  335 FSPDGKYYVDTYS  347 (353)
T ss_dssp             E-TTSSEEEEEEE
T ss_pred             ECCCCCEEEEEEc
Confidence            9999996655543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=92.22  E-value=8.3  Score=34.59  Aligned_cols=105  Identities=13%  Similarity=0.101  Sum_probs=66.2

Q ss_pred             CeEECC-CCCEEEEeCCCcEEEEc-CCC-eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEE
Q 018474           98 GLTTTK-DGGVILCDNEKGLLKVT-EEG-VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRK  174 (355)
Q Consensus        98 gl~~d~-~g~L~v~~~~~gl~~~~-~~g-~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~  174 (355)
                      .+.+++ .+.|.|+.|.+.+..|+ +.- ++.......-+-+.++.++-++|+++                  ..|.+.+
T Consensus        18 ~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~------------------~dg~vr~   79 (323)
T KOG1036|consen   18 SVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGG------------------LDGQVRR   79 (323)
T ss_pred             eEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEec------------------cCceEEE
Confidence            667764 45788998887666666 322 22111111223445555555666653                  2568999


Q ss_pred             EeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCC
Q 018474          175 YDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKG  221 (355)
Q Consensus       175 ~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~  221 (355)
                      ||.++++...+........+|...+... .+++..+.+.|-.+|...
T Consensus        80 ~Dln~~~~~~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~  125 (323)
T KOG1036|consen   80 YDLNTGNEDQIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRN  125 (323)
T ss_pred             EEecCCcceeeccCCCceEEEEeeccCC-eEEEcccCccEEEEeccc
Confidence            9998887666655544455677665444 788888899999998753

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=92.01  E-value=4.4  Score=36.56  Aligned_cols=133  Identities=13%  Similarity=0.030  Sum_probs=70.7

Q ss_pred             cccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCC---Ccc-eeEecc---c--CCCCcCceEECCCCCEEEEeecCCc
Q 018474          188 GFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDR---AGI-LDAFIE---N--LPGGPDNINLAPDGSFWIGLIKMNQ  258 (355)
Q Consensus       188 ~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~---~~~-~~~~~~---~--~~g~p~~i~~d~~G~lwv~~~~~~~  258 (355)
                      .+..|-||+++|.+. +||++...+....|+.+...   ... ...-+.   .  .++.|.|+++.....+-|.. .+.+
T Consensus        21 ~L~N~WGia~~p~~~-~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~-~g~~   98 (336)
T TIGR03118        21 GLRNAWGLSYRPGGP-FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSG-EGIT   98 (336)
T ss_pred             cccccceeEecCCCC-EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcC-CCcc
Confidence            567899999999874 99999999989999875211   111 111111   1  23478898886544443433 2221


Q ss_pred             hhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCe-----EEEEEEC-CCCCcccceeEEE-EeCCEEE
Q 018474          259 TGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGK-----IIRDFND-PDATYISFVTSAA-EFDGNLY  331 (355)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~-----~~~~~~~-~~g~~~~~~~~~~-~~~g~L~  331 (355)
                      ....|+                       +.++.+.|...+|.-+.     .+..+.. ..|.++....... ..++.||
T Consensus        99 ~~a~Fi-----------------------f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LY  155 (336)
T TIGR03118        99 GPSRFL-----------------------FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLY  155 (336)
T ss_pred             cceeEE-----------------------EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEE
Confidence            111110                       11333444444431111     1122321 1233332222111 1258899


Q ss_pred             EeecCCCeEEEeeC
Q 018474          332 LASLQSNFIGILPL  345 (355)
Q Consensus       332 v~~~~~~~i~~~~~  345 (355)
                      ..++++++|-+++-
T Consensus       156 aadF~~g~IDVFd~  169 (336)
T TIGR03118       156 AANFRQGRIDVFKG  169 (336)
T ss_pred             EeccCCCceEEecC
Confidence            99999999998864

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=91.92  E-value=8.3  Score=33.93  Aligned_cols=180  Identities=13%  Similarity=0.090  Sum_probs=98.5

Q ss_pred             CCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEE-ee--ccCCCcccCeEECCCC-CEEEEeCC-CcEEEEc-CC
Q 018474           49 GCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVN-WK--HIDSQSLLGLTTTKDG-GVILCDNE-KGLLKVT-EE  122 (355)
Q Consensus        49 ~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~-~~--~~~~~p~~gl~~d~~g-~L~v~~~~-~gl~~~~-~~  122 (355)
                      +..+.-.++++..++..|-.++.++.+..++...++... +.  ...+... -++.++.. .++++.++ +-+.+.+ ..
T Consensus        18 ~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svd-ql~w~~~~~d~~atas~dk~ir~wd~r~   96 (313)
T KOG1407|consen   18 GHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVD-QLCWDPKHPDLFATASGDKTIRIWDIRS   96 (313)
T ss_pred             hhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchh-hheeCCCCCcceEEecCCceEEEEEecc
Confidence            445667889998777778888888877777764443221 11  0111233 56777543 45554444 3455555 34


Q ss_pred             C--eEEEcCCcCCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeC
Q 018474          123 G--VEAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSK  199 (355)
Q Consensus       123 g--~~~~~~~~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~  199 (355)
                      +  ..++... ..-.-++..|+|+ +-+.+                  ....+..+|..+.+...-.+.....|-+++..
T Consensus        97 ~k~~~~i~~~-~eni~i~wsp~g~~~~~~~------------------kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~  157 (313)
T KOG1407|consen   97 GKCTARIETK-GENINITWSPDGEYIAVGN------------------KDDRITFIDARTYKIVNEEQFKFEVNEISWNN  157 (313)
T ss_pred             CcEEEEeecc-CcceEEEEcCCCCEEEEec------------------CcccEEEEEecccceeehhcccceeeeeeecC
Confidence            4  3333222 1223345666663 33322                  13356666654444333233344567788887


Q ss_pred             CCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCc---eEECCCCCEEEEeec
Q 018474          200 NEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDN---INLAPDGSFWIGLIK  255 (355)
Q Consensus       200 dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~---i~~d~~G~lwv~~~~  255 (355)
                      +++ +++..++.++|..+..-  .++..+    .+...|.|   |.+|++|+++.....
T Consensus       158 ~nd-~Fflt~GlG~v~ILsyp--sLkpv~----si~AH~snCicI~f~p~GryfA~GsA  209 (313)
T KOG1407|consen  158 SND-LFFLTNGLGCVEILSYP--SLKPVQ----SIKAHPSNCICIEFDPDGRYFATGSA  209 (313)
T ss_pred             CCC-EEEEecCCceEEEEecc--cccccc----ccccCCcceEEEEECCCCceEeeccc
Confidence            776 77777777787776642  222222    22234566   458999987765443

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=91.63  E-value=0.76  Score=28.20  Aligned_cols=39  Identities=15%  Similarity=0.091  Sum_probs=28.9

Q ss_pred             EEEEEeCCCC-eEEEEEeCCCCCcceeEecccCCCCcCceEEC
Q 018474          203 FVVVCESWKF-RCRRYWLKGDRAGILDAFIENLPGGPDNINLA  244 (355)
Q Consensus       203 ~l~v~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d  244 (355)
                      .+||++...+ .|.+.+++|..   .++++...-..|.++++|
T Consensus         2 ~iYWtD~~~~~~I~~a~~dGs~---~~~vi~~~l~~P~giaVD   41 (42)
T PF00058_consen    2 KIYWTDWSQDPSIERANLDGSN---RRTVISDDLQHPEGIAVD   41 (42)
T ss_dssp             EEEEEETTTTEEEEEEETTSTS---EEEEEESSTSSEEEEEEE
T ss_pred             EEEEEECCCCcEEEEEECCCCC---eEEEEECCCCCcCEEEEC
Confidence            5999999999 99999988743   344444334569999887

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=91.61  E-value=11  Score=34.71  Aligned_cols=138  Identities=14%  Similarity=0.195  Sum_probs=80.6

Q ss_pred             CCeEEEEecCCEEEEEEcCCCeeEEeec-cCCCcccCeE-ECC-CCCEEEEeC----CCcEEEEcCCC---eEEEcCCcC
Q 018474           63 KGALYTATRDGWVKYFILHNETLVNWKH-IDSQSLLGLT-TTK-DGGVILCDN----EKGLLKVTEEG---VEAIVPDAS  132 (355)
Q Consensus        63 ~g~l~~~~~~g~i~~~~~~~g~~~~~~~-~~~~p~~gl~-~d~-~g~L~v~~~----~~gl~~~~~~g---~~~~~~~~~  132 (355)
                      ..+|.+..++. |+.+|.++-+..+... ...+|. |+. +.. .++-|++-.    .+.++.+|...   +..+.....
T Consensus        97 r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~-gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~  174 (391)
T KOG2110|consen   97 RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPK-GLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKG  174 (391)
T ss_pred             cceEEEEEccc-EEEEecccceeehhhhccCCCcc-ceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCC
Confidence            45577666655 8999987766543322 224455 543 332 223344321    23466666322   333333335


Q ss_pred             CcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEE-EeC-CCCeEEEeecccc--ccccEEEeCCCCEEEEEe
Q 018474          133 FTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRK-YDP-KLKETTVLHEGFY--FANGIALSKNEDFVVVCE  208 (355)
Q Consensus       133 ~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~-~dp-~~~~~~~~~~~~~--~pngi~~~~dg~~l~v~~  208 (355)
                      .+..++++++|++..|-+.                 .|.+.| |.- ++.++..+..+..  .-..++|++|+.+| .+.
T Consensus       175 ~lAalafs~~G~llATASe-----------------KGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L-~~s  236 (391)
T KOG2110|consen  175 PLAALAFSPDGTLLATASE-----------------KGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFL-AAS  236 (391)
T ss_pred             ceeEEEECCCCCEEEEecc-----------------CceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeE-EEe
Confidence            6788999999999887554                 455544 443 3345555555543  23468999999855 444


Q ss_pred             CCCCeEEEEEeC
Q 018474          209 SWKFRCRRYWLK  220 (355)
Q Consensus       209 ~~~~~i~~~~~~  220 (355)
                      +....|+.|.++
T Consensus       237 S~TeTVHiFKL~  248 (391)
T KOG2110|consen  237 SNTETVHIFKLE  248 (391)
T ss_pred             cCCCeEEEEEec
Confidence            567889998874

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=91.49  E-value=13  Score=35.32  Aligned_cols=142  Identities=15%  Similarity=0.093  Sum_probs=74.9

Q ss_pred             eEEEEeCCCCeEEEeeccccc--cccEEEeCCCCEEEEEeCCC----------CeEEEEEeCCCCCcceeEecccCCCC-
Q 018474          171 QLRKYDPKLKETTVLHEGFYF--ANGIALSKNEDFVVVCESWK----------FRCRRYWLKGDRAGILDAFIENLPGG-  237 (355)
Q Consensus       171 ~l~~~dp~~~~~~~~~~~~~~--pngi~~~~dg~~l~v~~~~~----------~~i~~~~~~~~~~~~~~~~~~~~~g~-  237 (355)
                      .++.+|.++|+...  ..+..  ..++++.+|++.+|++....          ..|+++.+......-..+|-+..+.+ 
T Consensus       151 ~l~v~Dl~tg~~l~--d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~  228 (414)
T PF02897_consen  151 TLRVFDLETGKFLP--DGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFW  228 (414)
T ss_dssp             EEEEEETTTTEEEE--EEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTS
T ss_pred             EEEEEECCCCcCcC--CcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcE
Confidence            58888998886532  22222  22389999999888876443          34677776332221122332222222 


Q ss_pred             cCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCC----eEEEEEEC-C
Q 018474          238 PDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDG----KIIRDFND-P  312 (355)
Q Consensus       238 p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g----~~~~~~~~-~  312 (355)
                      --++..+++|++.+-.....                                .....++.++..++    .....+.. .
T Consensus       229 ~~~~~~s~d~~~l~i~~~~~--------------------------------~~~s~v~~~d~~~~~~~~~~~~~l~~~~  276 (414)
T PF02897_consen  229 FVSVSRSKDGRYLFISSSSG--------------------------------TSESEVYLLDLDDGGSPDAKPKLLSPRE  276 (414)
T ss_dssp             EEEEEE-TTSSEEEEEEESS--------------------------------SSEEEEEEEECCCTTTSS-SEEEEEESS
T ss_pred             EEEEEecCcccEEEEEEEcc--------------------------------ccCCeEEEEeccccCCCcCCcEEEeCCC
Confidence            22456788888544433311                                11356888877332    23444433 2


Q ss_pred             CCCcccceeEEEEeCCEEEEee---cCCCeEEEeeCCCCCC
Q 018474          313 DATYISFVTSAAEFDGNLYLAS---LQSNFIGILPLDGPEP  350 (355)
Q Consensus       313 ~g~~~~~~~~~~~~~g~L~v~~---~~~~~i~~~~~~~~~~  350 (355)
                      ++    ....+...++.+|+-+   ....+|.++++.+..+
T Consensus       277 ~~----~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~  313 (414)
T PF02897_consen  277 DG----VEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSP  313 (414)
T ss_dssp             SS-----EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSG
T ss_pred             Cc----eEEEEEccCCEEEEeeCCCCCCcEEEEeccccccc
Confidence            33    2333444578899865   4456888888877653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=91.44  E-value=13  Score=35.34  Aligned_cols=143  Identities=12%  Similarity=0.158  Sum_probs=73.3

Q ss_pred             eEEEeeCCCeEE-EEecCCEEEEEEcCCCeeE-EeeccCCCcccCeEECCC-CCEEEEeCCCcEEEEc-C-CC-eE-EEc
Q 018474           56 DVSVVVSKGALY-TATRDGWVKYFILHNETLV-NWKHIDSQSLLGLTTTKD-GGVILCDNEKGLLKVT-E-EG-VE-AIV  128 (355)
Q Consensus        56 ~i~~d~~~g~l~-~~~~~g~i~~~~~~~g~~~-~~~~~~~~p~~gl~~d~~-g~L~v~~~~~gl~~~~-~-~g-~~-~~~  128 (355)
                      ++.+- ++|.|+ +|...|.|..||.++.... .+.......+ -..+.+. +.+++....+.+.++. . ++ +. .+.
T Consensus        73 s~~fR-~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~-~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~  150 (487)
T KOG0310|consen   73 SVDFR-SDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVH-VTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELS  150 (487)
T ss_pred             EEEee-cCCeEEEccCCcCcEEEeccccHHHHHHHhhccCcee-EEEecccCCeEEEecCCCceEEEEEcCCcEEEEEec
Confidence            34444 444444 4556677777774332111 1111112234 4555544 4556655556777776 3 34 42 222


Q ss_pred             CCcCCcccEEEcc-CCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCe--EEEeeccccccccEEEeCCCCEEE
Q 018474          129 PDASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE--TTVLHEGFYFANGIALSKNEDFVV  205 (355)
Q Consensus       129 ~~~~~~~~l~~d~-dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~--~~~~~~~~~~pngi~~~~dg~~l~  205 (355)
                      .....+...++.| ++.+.++.+.                 .|.+-.||..+..  ...+..+... ..+.+-|.|. ++
T Consensus       151 ~htDYVR~g~~~~~~~hivvtGsY-----------------Dg~vrl~DtR~~~~~v~elnhg~pV-e~vl~lpsgs-~i  211 (487)
T KOG0310|consen  151 GHTDYVRCGDISPANDHIVVTGSY-----------------DGKVRLWDTRSLTSRVVELNHGCPV-ESVLALPSGS-LI  211 (487)
T ss_pred             CCcceeEeeccccCCCeEEEecCC-----------------CceEEEEEeccCCceeEEecCCCce-eeEEEcCCCC-EE
Confidence            3335677777766 4567777443                 5667777765542  1222222222 2344445655 54


Q ss_pred             EEeCCCCeEEEEEeC
Q 018474          206 VCESWKFRCRRYWLK  220 (355)
Q Consensus       206 v~~~~~~~i~~~~~~  220 (355)
                      ++. +.+.+.+||+.
T Consensus       212 asA-gGn~vkVWDl~  225 (487)
T KOG0310|consen  212 ASA-GGNSVKVWDLT  225 (487)
T ss_pred             EEc-CCCeEEEEEec
Confidence            543 56788888885

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=91.35  E-value=14  Score=35.29  Aligned_cols=193  Identities=12%  Similarity=0.072  Sum_probs=82.3

Q ss_pred             CCCeEEEEe-cCCEEEEEEcCCC----eeEEeec--------cCCCcccCeEECCCCCEEEEeC-------CCcEEEEcC
Q 018474           62 SKGALYTAT-RDGWVKYFILHNE----TLVNWKH--------IDSQSLLGLTTTKDGGVILCDN-------EKGLLKVTE  121 (355)
Q Consensus        62 ~~g~l~~~~-~~g~i~~~~~~~g----~~~~~~~--------~~~~p~~gl~~d~~g~L~v~~~-------~~gl~~~~~  121 (355)
                      ..+.|++.. .+++|+.+|..+.    ++.++..        ....|+ ...--++|+++|...       .+|++.+|.
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PH-T~Hclp~G~imIS~lGd~~G~g~Ggf~llD~  164 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPH-TVHCLPDGRIMISALGDADGNGPGGFVLLDG  164 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEE-EEEE-SS--EEEEEEEETTS-S--EEEEE-T
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCc-eeeecCCccEEEEeccCCCCCCCCcEEEEcC
Confidence            356677754 5789999997543    3333321        113466 555558999998642       246888885


Q ss_pred             CC---eEEEcCC---cCCcccEEEccCCcEEEEeCCCCC---CCccccccccccCCCCeEEEEeCCCCeEEEeeccc---
Q 018474          122 EG---VEAIVPD---ASFTNDVIAASDGTLYFTVASTKY---TPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGF---  189 (355)
Q Consensus       122 ~g---~~~~~~~---~~~~~~l~~d~dG~ly~~d~~~~~---~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~---  189 (355)
                      +.   .......   ..+-.++-.-+..++-+++.-...   ...-...++..+.....+..||-.+.+.....+-.   
T Consensus       165 ~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g  244 (461)
T PF05694_consen  165 ETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG  244 (461)
T ss_dssp             TT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE
T ss_pred             ccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC
Confidence            43   2222221   256667777787788887542110   00001122223333447889998877765333211   


Q ss_pred             cccccEE--EeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecc------------cC-------CCCcCceEECCCCC
Q 018474          190 YFANGIA--LSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIE------------NL-------PGGPDNINLAPDGS  248 (355)
Q Consensus       190 ~~pngi~--~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~------------~~-------~g~p~~i~~d~~G~  248 (355)
                      ..|--|.  -+|+...-|+.....+.|+++..+....-..+..++            .+       |+++..|.++-|.+
T Consensus       245 ~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDr  324 (461)
T PF05694_consen  245 QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDR  324 (461)
T ss_dssp             EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-
T ss_pred             CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCC
Confidence            1232232  235566677777777889888763221112222221            11       55677777777665


Q ss_pred             -EEEEeec
Q 018474          249 -FWIGLIK  255 (355)
Q Consensus       249 -lwv~~~~  255 (355)
                       |||+++.
T Consensus       325 fLYvs~W~  332 (461)
T PF05694_consen  325 FLYVSNWL  332 (461)
T ss_dssp             EEEEEETT
T ss_pred             EEEEEccc
Confidence             8999876

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=91.14  E-value=8.3  Score=37.48  Aligned_cols=111  Identities=12%  Similarity=0.093  Sum_probs=65.0

Q ss_pred             ccCCCCeEEEEeCCCCeEEEeeccccccccEEEeC--CCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceE
Q 018474          165 EGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSK--NEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNIN  242 (355)
Q Consensus       165 ~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~--dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~  242 (355)
                      .|++.|.++.|+...++++........++++...-  +.-+++.+.....++..++.....  ....+- ..+..+.+++
T Consensus        75 lgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~--~~~~~~-~~~~~~~sl~  151 (541)
T KOG4547|consen   75 LGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV--IIRIWK-EQKPLVSSLC  151 (541)
T ss_pred             eecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccce--eeeeec-cCCCccceEE
Confidence            45667888999888888877655444444433222  222233332234445555542211  111121 1223467788


Q ss_pred             ECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCc
Q 018474          243 LAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATY  316 (355)
Q Consensus       243 ~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~  316 (355)
                      +.+||.+.+....                                      .|-.+|-++++.+..|+.+.+.+
T Consensus       152 is~D~~~l~~as~--------------------------------------~ik~~~~~~kevv~~ftgh~s~v  187 (541)
T KOG4547|consen  152 ISPDGKILLTASR--------------------------------------QIKVLDIETKEVVITFTGHGSPV  187 (541)
T ss_pred             EcCCCCEEEeccc--------------------------------------eEEEEEccCceEEEEecCCCcce
Confidence            9999987775543                                      47788876889999998877753

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=91.06  E-value=1.9  Score=39.17  Aligned_cols=136  Identities=15%  Similarity=0.162  Sum_probs=77.2

Q ss_pred             CCeEEEEecCCEEEEEEcCCCeeE-EeeccCCCcccCeEECCCCCEEEEeCCCcEEEEc---CCC---eEEEcCCcCCcc
Q 018474           63 KGALYTATRDGWVKYFILHNETLV-NWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT---EEG---VEAIVPDASFTN  135 (355)
Q Consensus        63 ~g~l~~~~~~g~i~~~~~~~g~~~-~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~---~~g---~~~~~~~~~~~~  135 (355)
                      +..+..|+.+..|..+|-.+|+.. .+...+.... ++.+. +|.+.-+...+.+...+   +..   .+++......+|
T Consensus       247 ~rviisGSSDsTvrvWDv~tge~l~tlihHceaVL-hlrf~-ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN  324 (499)
T KOG0281|consen  247 ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVL-HLRFS-NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN  324 (499)
T ss_pred             ceEEEecCCCceEEEEeccCCchhhHHhhhcceeE-EEEEe-CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee
Confidence            445555677777778887777643 2223334455 66663 44443333333333333   221   222333336677


Q ss_pred             cEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCCCeEE
Q 018474          136 DVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCR  215 (355)
Q Consensus       136 ~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~  215 (355)
                      .+.+|..  +.++-++                 ...+-.|+..|.++.....+  .-.|||.-.-...++++.+..+.|.
T Consensus       325 vVdfd~k--yIVsASg-----------------DRTikvW~~st~efvRtl~g--HkRGIAClQYr~rlvVSGSSDntIR  383 (499)
T KOG0281|consen  325 VVDFDDK--YIVSASG-----------------DRTIKVWSTSTCEFVRTLNG--HKRGIACLQYRDRLVVSGSSDNTIR  383 (499)
T ss_pred             eeccccc--eEEEecC-----------------CceEEEEeccceeeehhhhc--ccccceehhccCeEEEecCCCceEE
Confidence            7777654  4444333                 33577778777776443332  3456665554446999999999999


Q ss_pred             EEEeCC
Q 018474          216 RYWLKG  221 (355)
Q Consensus       216 ~~~~~~  221 (355)
                      .++++.
T Consensus       384 lwdi~~  389 (499)
T KOG0281|consen  384 LWDIEC  389 (499)
T ss_pred             EEeccc
Confidence            999854

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=91.01  E-value=12  Score=33.89  Aligned_cols=133  Identities=11%  Similarity=0.143  Sum_probs=71.8

Q ss_pred             CeEECCCCCEEEEeCC--CcEEEEc-CCC--eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeE
Q 018474           98 GLTTTKDGGVILCDNE--KGLLKVT-EEG--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQL  172 (355)
Q Consensus        98 gl~~d~~g~L~v~~~~--~gl~~~~-~~g--~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l  172 (355)
                      .++++   ..|++..+  ..|..|| +..  ...+......++.+.++++-.               ...++.+...|.+
T Consensus        48 avAVs---~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S---------------~shLlS~sdDG~i  109 (362)
T KOG0294|consen   48 ALAVS---GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLS---------------KSHLLSGSDDGHI  109 (362)
T ss_pred             EEEec---ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcc---------------hhheeeecCCCcE
Confidence            56664   34555433  2466777 322  222222234566666654320               0022233446677


Q ss_pred             EEEeCCCCeEEEee---ccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCE
Q 018474          173 RKYDPKLKETTVLH---EGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSF  249 (355)
Q Consensus       173 ~~~dp~~~~~~~~~---~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~l  249 (355)
                      ..|+  .+.+..+.   ..-..-++++++|-++ |-++-.+.+.+..+++=..+    ..++-++...+..+.++++|..
T Consensus       110 ~iw~--~~~W~~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~Gr----~a~v~~L~~~at~v~w~~~Gd~  182 (362)
T KOG0294|consen  110 IIWR--VGSWELLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRGR----VAFVLNLKNKATLVSWSPQGDH  182 (362)
T ss_pred             EEEE--cCCeEEeeeecccccccceeEecCCCc-eEEEEcCCceeeeehhhcCc----cceeeccCCcceeeEEcCCCCE
Confidence            7777  34554432   1223478999999998 66665555566666652111    1233344455677889999986


Q ss_pred             EEEeec
Q 018474          250 WIGLIK  255 (355)
Q Consensus       250 wv~~~~  255 (355)
                      |+-...
T Consensus       183 F~v~~~  188 (362)
T KOG0294|consen  183 FVVSGR  188 (362)
T ss_pred             EEEEec
Confidence            665554

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=90.99  E-value=8.1  Score=38.90  Aligned_cols=149  Identities=19%  Similarity=0.142  Sum_probs=85.5

Q ss_pred             CCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEc--CCC--eEEEc
Q 018474           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG--VEAIV  128 (355)
Q Consensus        53 ~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~--~~g--~~~~~  128 (355)
                      .--++.+.|++..|-++.-|..+..|-..+=++..-.....-|..+|-+.+|+.|.++.+.+.-+++.  .-|  -+.+-
T Consensus       510 dvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~f  589 (888)
T KOG0306|consen  510 DVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFF  589 (888)
T ss_pred             cEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhh
Confidence            34466677656666666667666555553433322111111132267777999999987665545554  235  23332


Q ss_pred             CCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCe-EEEeeccccccccEEEeCCCCEEEEE
Q 018474          129 PDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE-TTVLHEGFYFANGIALSKNEDFVVVC  207 (355)
Q Consensus       129 ~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~-~~~~~~~~~~pngi~~~~dg~~l~v~  207 (355)
                      .....+..+.+-|+-.++|+-+.                 .+.+-+||.+.-+ ++.+.........++.+|+|. ..++
T Consensus       590 AHdDSvm~V~F~P~~~~FFt~gK-----------------D~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~-~vvs  651 (888)
T KOG0306|consen  590 AHDDSVMSVQFLPKTHLFFTCGK-----------------DGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGS-FVVS  651 (888)
T ss_pred             cccCceeEEEEcccceeEEEecC-----------------cceEEeechhhhhhheeeccchheeeeeEEcCCCC-eEEe
Confidence            22256778888888888887543                 5567778743221 222222334456788999998 4555


Q ss_pred             eCCCCeEEEEEe
Q 018474          208 ESWKFRCRRYWL  219 (355)
Q Consensus       208 ~~~~~~i~~~~~  219 (355)
                      .+....|..|..
T Consensus       652 ~shD~sIRlwE~  663 (888)
T KOG0306|consen  652 SSHDKSIRLWER  663 (888)
T ss_pred             ccCCceeEeeec
Confidence            555566766654

>PHA03098 kelch-like protein; Provisional

Probab=90.97  E-value=11  Score=37.24  Aligned_cols=113  Identities=13%  Similarity=0.068  Sum_probs=59.4

Q ss_pred             CCeEEE-Eec-----CCEEEEEEcCCCeeEEeeccC-CC-cccCeEECCCCCEEEEeCC-------CcEEEEcC-CC-eE
Q 018474           63 KGALYT-ATR-----DGWVKYFILHNETLVNWKHID-SQ-SLLGLTTTKDGGVILCDNE-------KGLLKVTE-EG-VE  125 (355)
Q Consensus        63 ~g~l~~-~~~-----~g~i~~~~~~~g~~~~~~~~~-~~-p~~gl~~d~~g~L~v~~~~-------~gl~~~~~-~g-~~  125 (355)
                      ++.+|+ |..     ...+.++|+.+++|+...... .+ .. +.+. -+|++|+....       +.+.++++ ++ .+
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~-~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~  419 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNP-CVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWS  419 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccc-eEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeee
Confidence            566775 322     134678898888887654321 11 12 2222 46789986431       23678884 44 44


Q ss_pred             EEcCCc-CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee
Q 018474          126 AIVPDA-SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH  186 (355)
Q Consensus       126 ~~~~~~-~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~  186 (355)
                      .+.... ..-..-++.-+|.||+.......   ..      ......+++|||.+++++.+.
T Consensus       420 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~---~~------~~~~~~v~~yd~~~~~W~~~~  472 (534)
T PHA03098        420 KGSPLPISHYGGCAIYHDGKIYVIGGISYI---DN------IKVYNIVESYNPVTNKWTELS  472 (534)
T ss_pred             ecCCCCccccCceEEEECCEEEEECCccCC---CC------CcccceEEEecCCCCceeeCC
Confidence            433221 11112233346789986532100   00      001234999999999988764

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=90.64  E-value=17  Score=35.03  Aligned_cols=116  Identities=12%  Similarity=0.048  Sum_probs=68.1

Q ss_pred             EEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHH
Q 018474          195 IALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELL  274 (355)
Q Consensus       195 i~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~  274 (355)
                      +.+++-.++++.+...++.|..||+.|..  .+..+......-..|+++.+.....+++-+-                  
T Consensus       170 l~ys~skr~lL~~asd~G~VtlwDv~g~s--p~~~~~~~HsAP~~gicfspsne~l~vsVG~------------------  229 (673)
T KOG4378|consen  170 LRYSPSKRFLLSIASDKGAVTLWDVQGMS--PIFHASEAHSAPCRGICFSPSNEALLVSVGY------------------  229 (673)
T ss_pred             eecccccceeeEeeccCCeEEEEeccCCC--cccchhhhccCCcCcceecCCccceEEEecc------------------
Confidence            45778888899988888899999987632  1111221111124789988877554444331                  


Q ss_pred             HhccchhhcccCCCCCCceEEEEEeCCCCeE-EEEEECCCCCcccceeEEEEe-CCEEEEeecCCCeEEEeeCCCCCCCc
Q 018474          275 DAYPGLISLLLPMGSDAGARVVKVDGNDGKI-IRDFNDPDATYISFVTSAAEF-DGNLYLASLQSNFIGILPLDGPEPQL  352 (355)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~-~~~~~~~~g~~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~~~~~~~~~  352 (355)
                                     +  --|+.||. .-+. ...+.-.     ...+.+.+. .|...+.+...+.|.-|+++...+-.
T Consensus       230 ---------------D--kki~~yD~-~s~~s~~~l~y~-----~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv  286 (673)
T KOG4378|consen  230 ---------------D--KKINIYDI-RSQASTDRLTYS-----HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPV  286 (673)
T ss_pred             ---------------c--ceEEEeec-ccccccceeeec-----CCcceeeecCCceEEEeecCCceEEEEecccCCCCc
Confidence                           0  24778886 3332 2222221     123344444 47766666668889999988766544


Q ss_pred             C
Q 018474          353 A  353 (355)
Q Consensus       353 ~  353 (355)
                      +
T Consensus       287 ~  287 (673)
T KOG4378|consen  287 A  287 (673)
T ss_pred             e
Confidence            3

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=90.52  E-value=3.2  Score=38.60  Aligned_cols=147  Identities=12%  Similarity=0.124  Sum_probs=81.0

Q ss_pred             ceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEe-eccCCCcccCeEECCCCCEEEEeCCCcEEEEcC--CC--eEEEcC
Q 018474           55 EDVSVVVSKGALYTATRDGWVKYFILHNETLVNW-KHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE--EG--VEAIVP  129 (355)
Q Consensus        55 ~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~-~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~--~g--~~~~~~  129 (355)
                      .++.+..++..+..++.+|-|..+++.-.-.+.+ ......+. ++++.+++..|++.+.+|.+++-.  ..  ..++..
T Consensus       142 r~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIR-dlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~G  220 (464)
T KOG0284|consen  142 RTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIR-DLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRG  220 (464)
T ss_pred             eeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhh-eeccCCCCceeEEecCCCeEEEEeccCCchhheecc
Confidence            4555662333333344455555555533322211 11113466 899998888888887878776642  22  233433


Q ss_pred             CcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEE-EeeccccccccEEEeCCCCEEEEEe
Q 018474          130 DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT-VLHEGFYFANGIALSKNEDFVVVCE  208 (355)
Q Consensus       130 ~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~-~~~~~~~~pngi~~~~dg~~l~v~~  208 (355)
                      ....+.++...|.-.+.++-+.                 ..-+-.+||++++-- .+...-..--++.+.++++ .+.+.
T Consensus       221 HgwdVksvdWHP~kgLiasgsk-----------------DnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N-~Llt~  282 (464)
T KOG0284|consen  221 HGWDVKSVDWHPTKGLIASGSK-----------------DNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGN-WLLTG  282 (464)
T ss_pred             CCCCcceeccCCccceeEEccC-----------------CceeEeecCCCcchhhhhhhccceEEEEEEcCCCC-eeEEc
Confidence            3356777777776555554322                 334566899877421 1111112234567889987 44555


Q ss_pred             CCCCeEEEEEeC
Q 018474          209 SWKFRCRRYWLK  220 (355)
Q Consensus       209 ~~~~~i~~~~~~  220 (355)
                      +....+..||++
T Consensus       283 skD~~~kv~DiR  294 (464)
T KOG0284|consen  283 SKDQSCKVFDIR  294 (464)
T ss_pred             cCCceEEEEehh
Confidence            566778888885

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=90.46  E-value=5.5  Score=39.58  Aligned_cols=99  Identities=14%  Similarity=0.258  Sum_probs=59.9

Q ss_pred             CCCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEcCCC--eE
Q 018474           48 EGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEEG--VE  125 (355)
Q Consensus        48 ~~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~~g--~~  125 (355)
                      .|....-.++++- ++..+..++.||.|..++...+.+.+..-..+..+ .+....++.++|++..++-+++.+.+  .+
T Consensus       176 ~gHtD~VRgL~vl-~~~~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vY-sis~~~~~~~Ivs~gEDrtlriW~~~e~~q  253 (745)
T KOG0301|consen  176 SGHTDCVRGLAVL-DDSHFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVY-SISMALSDGLIVSTGEDRTLRIWKKDECVQ  253 (745)
T ss_pred             ccchhheeeeEEe-cCCCeEeecCCceEEEEeccCceeeeeeccceEEE-EEEecCCCCeEEEecCCceEEEeecCceEE
Confidence            3444556677777 56567777789989889884444444433345567 77766678899988888877777533  44


Q ss_pred             EEcCCcCCcccEEEccCCcEEEE
Q 018474          126 AIVPDASFTNDVIAASDGTLYFT  148 (355)
Q Consensus       126 ~~~~~~~~~~~l~~d~dG~ly~~  148 (355)
                      .+.-+...+-+..+-++|.|+++
T Consensus       254 ~I~lPttsiWsa~~L~NgDIvvg  276 (745)
T KOG0301|consen  254 VITLPTTSIWSAKVLLNGDIVVG  276 (745)
T ss_pred             EEecCccceEEEEEeeCCCEEEe
Confidence            44333223334444344444443

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=90.43  E-value=20  Score=35.58  Aligned_cols=153  Identities=11%  Similarity=0.071  Sum_probs=86.5

Q ss_pred             cCCCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEE-c-CCC-
Q 018474           47 GEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKV-T-EEG-  123 (355)
Q Consensus        47 ~~~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~-~-~~g-  123 (355)
                      .+|...+--+++....++.|+.++.|..+..+|..+|+-.....  +...++..++..+.+.++...+..+++ + .++ 
T Consensus       245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~--gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~  322 (537)
T KOG0274|consen  245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQ--GHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGA  322 (537)
T ss_pred             ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEec--CCCceEEEEEccCceEeeccCCceEEEEeccCcc
Confidence            45666666777776336677788889999999988887665443  222202334433444444223344444 4 456 


Q ss_pred             -eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccc-cccccEEEeCCC
Q 018474          124 -VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGF-YFANGIALSKNE  201 (355)
Q Consensus       124 -~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~-~~pngi~~~~dg  201 (355)
                       ++++......++.+..+  +.+.|+.+.                 .+.+-.||+.+++.-....+. ..-..+.++.. 
T Consensus       323 ~l~l~~~h~~~V~~v~~~--~~~lvsgs~-----------------d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-  382 (537)
T KOG0274|consen  323 CLNLLRGHTGPVNCVQLD--EPLLVSGSY-----------------DGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-  382 (537)
T ss_pred             eEEEeccccccEEEEEec--CCEEEEEec-----------------CceEEEEEhhhceeeeeecCCcceEEEEEecCc-
Confidence             55554333567777776  555555433                 456778887766653333331 11223344332 


Q ss_pred             CEEEEEeCCCCeEEEEEeCCC
Q 018474          202 DFVVVCESWKFRCRRYWLKGD  222 (355)
Q Consensus       202 ~~l~v~~~~~~~i~~~~~~~~  222 (355)
                      . .++..+....|..+|+.+.
T Consensus       383 ~-~~~Sgs~D~~IkvWdl~~~  402 (537)
T KOG0274|consen  383 N-RLLSGSLDTTIKVWDLRTK  402 (537)
T ss_pred             c-eEEeeeeccceEeecCCch
Confidence            4 4455555677888888654

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=90.38  E-value=14  Score=33.60  Aligned_cols=61  Identities=13%  Similarity=0.087  Sum_probs=38.1

Q ss_pred             cccccEEEeCCCCEEEEEeCCCCeEEEEEeCC-CCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474          190 YFANGIALSKNEDFVVVCESWKFRCRRYWLKG-DRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       190 ~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      ..|--++++|.|+.|-++  ....|..|.-+. +.....+   +-..+-..++..+++|++.+++..
T Consensus       332 ~~p~RL~lsP~g~~lA~s--~gs~l~~~~se~g~~~~~~e---~~h~~~Is~is~~~~g~~~atcGd  393 (420)
T KOG2096|consen  332 SEPVRLELSPSGDSLAVS--FGSDLKVFASEDGKDYPELE---DIHSTTISSISYSSDGKYIATCGD  393 (420)
T ss_pred             CCceEEEeCCCCcEEEee--cCCceEEEEcccCccchhHH---HhhcCceeeEEecCCCcEEeeecc
Confidence            456678999999965554  345677776532 2222222   122334677899999998887754

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=90.22  E-value=15  Score=33.96  Aligned_cols=155  Identities=14%  Similarity=0.214  Sum_probs=96.8

Q ss_pred             CCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCe---eEE--------------------eeccCC--CcccCeEECC
Q 018474           49 GCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNET---LVN--------------------WKHIDS--QSLLGLTTTK  103 (355)
Q Consensus        49 ~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~---~~~--------------------~~~~~~--~p~~gl~~d~  103 (355)
                      |.-..-+++..++++..+..++.|..|-.++.....   .+.                    .....+  .|...+.+++
T Consensus       191 GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d  270 (423)
T KOG0313|consen  191 GHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD  270 (423)
T ss_pred             ccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC
Confidence            555667888888444444456678777766621110   000                    001111  1221566777


Q ss_pred             CCCEEEEeCCCcEEEEc-CCC--eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCC
Q 018474          104 DGGVILCDNEKGLLKVT-EEG--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLK  180 (355)
Q Consensus       104 ~g~L~v~~~~~gl~~~~-~~g--~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~  180 (355)
                      .+.+|-+.+.+-|...| .+|  ...+... ...+++...+.-.+.++.++                 ..-+..|||.++
T Consensus       271 ~~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~~Ll~~gss-----------------dr~irl~DPR~~  332 (423)
T KOG0313|consen  271 ATVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLSKLLASGSS-----------------DRHIRLWDPRTG  332 (423)
T ss_pred             CCceEeecccceEEEEEeecccceeeeecC-cceeEeecccccceeeecCC-----------------CCceeecCCCCC
Confidence            77888888887777778 454  4444333 46777777777777776544                 334677899877


Q ss_pred             eEEEeeccc----cccccEEEeCCCCEEEEEeCCCCeEEEEEeCC
Q 018474          181 ETTVLHEGF----YFANGIALSKNEDFVVVCESWKFRCRRYWLKG  221 (355)
Q Consensus       181 ~~~~~~~~~----~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~  221 (355)
                      .-..+...+    ..-.++..+|...+.+++.+..+.+..+|++.
T Consensus       333 ~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS  377 (423)
T KOG0313|consen  333 DGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRS  377 (423)
T ss_pred             CCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEecc
Confidence            544443222    23457888999889999999999999999854

>KOG4328 consensus WD40 protein [Function unknown]

Probab=89.97  E-value=18  Score=34.35  Aligned_cols=148  Identities=11%  Similarity=0.099  Sum_probs=79.7

Q ss_pred             CceEEEeeC-CCeEEEEecCCEEEEEEcCCCeeEEeeccCC---CcccCeEEC-CCCCEEEEeCCCcEEEEc-C-CC--e
Q 018474           54 PEDVSVVVS-KGALYTATRDGWVKYFILHNETLVNWKHIDS---QSLLGLTTT-KDGGVILCDNEKGLLKVT-E-EG--V  124 (355)
Q Consensus        54 p~~i~~d~~-~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~---~p~~gl~~d-~~g~L~v~~~~~gl~~~~-~-~g--~  124 (355)
                      -.+|.+.|. ...+|..+++|.|...|.+.+.++.+.....   .-. ++.+. +++.+++++..+..-.+| . .|  .
T Consensus       237 Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs-~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~  315 (498)
T KOG4328|consen  237 VSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFS-SLDFSAESRSVLFGDNVGNFNVIDLRTDGSEY  315 (498)
T ss_pred             ccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeee-eccccCCCccEEEeecccceEEEEeecCCccc
Confidence            346666643 3457888889998888887776655443211   122 33333 456788877665333444 2 23  2


Q ss_pred             EEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCC--CeEEEeec---cccccccEEEeC
Q 018474          125 EAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKL--KETTVLHE---GFYFANGIALSK  199 (355)
Q Consensus       125 ~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~--~~~~~~~~---~~~~pngi~~~~  199 (355)
                      ..+......++++++.|-.--++++.+.                .+..-.||...  ++...+..   .-..-|...|||
T Consensus       316 ~~~~lh~kKI~sv~~NP~~p~~laT~s~----------------D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSP  379 (498)
T KOG4328|consen  316 ENLRLHKKKITSVALNPVCPWFLATASL----------------DQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSP  379 (498)
T ss_pred             hhhhhhhcccceeecCCCCchheeeccc----------------CcceeeeehhhhcCCCCcceecccccceeeeeEEcC
Confidence            2221111478889988866434433321                11222233211  11110111   112246778999


Q ss_pred             CCCEEEEEeCCCCeEEEEEe
Q 018474          200 NEDFVVVCESWKFRCRRYWL  219 (355)
Q Consensus       200 dg~~l~v~~~~~~~i~~~~~  219 (355)
                      ++.. +++....+.|..|+.
T Consensus       380 s~gt-l~TT~~D~~IRv~ds  398 (498)
T KOG4328|consen  380 SGGT-LLTTCQDNEIRVFDS  398 (498)
T ss_pred             CCCc-eEeeccCCceEEeec
Confidence            9986 667677889999986

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=89.91  E-value=13  Score=32.83  Aligned_cols=150  Identities=13%  Similarity=0.089  Sum_probs=90.7

Q ss_pred             CCceEEEeeCCCe-EEEEecCCEEEEEEcCCC-ee--EEeeccC--CCcccCeEECCCCCEEEEeCCCcEEEEc-C-CC-
Q 018474           53 HPEDVSVVVSKGA-LYTATRDGWVKYFILHNE-TL--VNWKHID--SQSLLGLTTTKDGGVILCDNEKGLLKVT-E-EG-  123 (355)
Q Consensus        53 ~p~~i~~d~~~g~-l~~~~~~g~i~~~~~~~g-~~--~~~~~~~--~~p~~gl~~d~~g~L~v~~~~~gl~~~~-~-~g-  123 (355)
                      .-=++++.|..|. |+.+..+..|..++...+ .+  +.....+  ..+. .+++.|.|++..+.+......+. + ++ 
T Consensus        16 r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVR-svAwsp~g~~La~aSFD~t~~Iw~k~~~e   94 (312)
T KOG0645|consen   16 RVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVR-SVAWSPHGRYLASASFDATVVIWKKEDGE   94 (312)
T ss_pred             cEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheee-eeeecCCCcEEEEeeccceEEEeecCCCc
Confidence            3457788854255 555666787777776422 22  2222211  2355 88999999966665556655555 3 44 


Q ss_pred             eEEEc---CCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEe---eccccccccEEE
Q 018474          124 VEAIV---PDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL---HEGFYFANGIAL  197 (355)
Q Consensus       124 ~~~~~---~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~---~~~~~~pngi~~  197 (355)
                      ++.+.   ...+.+-+++.+++|++..+-+..+               ..-++..| +.++++..   ....+--..+.+
T Consensus        95 fecv~~lEGHEnEVK~Vaws~sG~~LATCSRDK---------------SVWiWe~d-eddEfec~aVL~~HtqDVK~V~W  158 (312)
T KOG0645|consen   95 FECVATLEGHENEVKCVAWSASGNYLATCSRDK---------------SVWIWEID-EDDEFECIAVLQEHTQDVKHVIW  158 (312)
T ss_pred             eeEEeeeeccccceeEEEEcCCCCEEEEeeCCC---------------eEEEEEec-CCCcEEEEeeeccccccccEEEE
Confidence            55433   2337888999999999887765411               12233344 23455433   223333457888


Q ss_pred             eCCCCEEEEEeCCCCeEEEEEeC
Q 018474          198 SKNEDFVVVCESWKFRCRRYWLK  220 (355)
Q Consensus       198 ~~dg~~l~v~~~~~~~i~~~~~~  220 (355)
                      +|-.. |+++.+..+.|..|+-.
T Consensus       159 HPt~d-lL~S~SYDnTIk~~~~~  180 (312)
T KOG0645|consen  159 HPTED-LLFSCSYDNTIKVYRDE  180 (312)
T ss_pred             cCCcc-eeEEeccCCeEEEEeec
Confidence            99776 77777888888888754

>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins

Probab=89.90  E-value=0.28  Score=36.22  Aligned_cols=20  Identities=40%  Similarity=0.492  Sum_probs=13.8

Q ss_pred             CChhhHHHHHHHHHHHHHhc
Q 018474            1 MAPKSFLLACLLAFTVQIFF   20 (355)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~   20 (355)
                      |+||.||++++++++++++.
T Consensus         1 MaSK~~llL~l~LA~lLlis   20 (95)
T PF07172_consen    1 MASKAFLLLGLLLAALLLIS   20 (95)
T ss_pred             CchhHHHHHHHHHHHHHHHH
Confidence            99999888887544444433

Some of them may be involved in resistance to environmental stress [].

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=89.61  E-value=12  Score=33.91  Aligned_cols=135  Identities=10%  Similarity=0.074  Sum_probs=74.1

Q ss_pred             eEEEEeCCCCeEEEee------ccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCC--CCcceeEecccCCC---CcC
Q 018474          171 QLRKYDPKLKETTVLH------EGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGD--RAGILDAFIENLPG---GPD  239 (355)
Q Consensus       171 ~l~~~dp~~~~~~~~~------~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~g---~p~  239 (355)
                      -|-.||.-+|+.+.-.      +.+..+..++|+|||..||...  +.+|..|+...+  ....+.++..+..|   ...
T Consensus       134 PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy--krcirvFdt~RpGr~c~vy~t~~~~k~gq~giis  211 (406)
T KOG2919|consen  134 PIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY--KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIIS  211 (406)
T ss_pred             ceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc--cceEEEeeccCCCCCCcchhhhhcccccccceee
Confidence            4556666667655332      2234567799999999877653  578999997321  11111112111111   111


Q ss_pred             ceEECCC--CCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcc
Q 018474          240 NINLAPD--GSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYI  317 (355)
Q Consensus       240 ~i~~d~~--G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~  317 (355)
                      =+++.+.  +.+=+++...+                                   -+|++-+  ++..+..+..+.|.  
T Consensus       212 c~a~sP~~~~~~a~gsY~q~-----------------------------------~giy~~~--~~~pl~llggh~gG--  252 (406)
T KOG2919|consen  212 CFAFSPMDSKTLAVGSYGQR-----------------------------------VGIYNDD--GRRPLQLLGGHGGG--  252 (406)
T ss_pred             eeeccCCCCcceeeecccce-----------------------------------eeeEecC--CCCceeeecccCCC--
Confidence            1233332  23333333311                                   1333322  45556666665553  


Q ss_pred             cceeEE--EEeCCEEEEeecCCCeEEEeeCCCC
Q 018474          318 SFVTSA--AEFDGNLYLASLQSNFIGILPLDGP  348 (355)
Q Consensus       318 ~~~~~~--~~~~g~L~v~~~~~~~i~~~~~~~~  348 (355)
                        +|-+  ++++++||.|....++|..-+++..
T Consensus       253 --vThL~~~edGn~lfsGaRk~dkIl~WDiR~~  283 (406)
T KOG2919|consen  253 --VTHLQWCEDGNKLFSGARKDDKILCWDIRYS  283 (406)
T ss_pred             --eeeEEeccCcCeecccccCCCeEEEEeehhc
Confidence              4433  4677899999999999998877654

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=89.60  E-value=1.9  Score=40.67  Aligned_cols=183  Identities=9%  Similarity=0.022  Sum_probs=86.0

Q ss_pred             CCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEcCCC--eEEEcC
Q 018474           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEEG--VEAIVP  129 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~~g--~~~~~~  129 (355)
                      .+|-.+-..+.+..+.++...|.|..+|-.++++..-........ .+.+-.+..+|..--..-+|.||..|  ++-+..
T Consensus       130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~-Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~  208 (545)
T KOG1272|consen  130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVR-DVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKR  208 (545)
T ss_pred             cCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhh-hhhhhcchHHHHhhhhceEEEecCCCcEEeehhh
Confidence            689999999777778888888999999987776532111111122 22221121222111122355565555  333322


Q ss_pred             CcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEE-eeccccccccEEEeCCCCEEEEEe
Q 018474          130 DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV-LHEGFYFANGIALSKNEDFVVVCE  208 (355)
Q Consensus       130 ~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~-~~~~~~~pngi~~~~dg~~l~v~~  208 (355)
                      . ..++.+.+-|-..|.++.+.                 .|.+-.-|-.+|++.. +..+.....-++-.|-+..+.+..
T Consensus       209 ~-~~v~rLeFLPyHfLL~~~~~-----------------~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Gh  270 (545)
T KOG1272|consen  209 H-IRVARLEFLPYHFLLVAASE-----------------AGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGH  270 (545)
T ss_pred             c-Cchhhhcccchhheeeeccc-----------------CCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcC
Confidence            1 23333444444434444322                 2223223444443211 111111111222333333233322


Q ss_pred             CCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeecCC
Q 018474          209 SWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMN  257 (355)
Q Consensus       209 ~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~  257 (355)
                       .++.|..|.++... --.+.+  ...|--..+++|++|++.+++...+
T Consensus       271 -snGtVSlWSP~ske-PLvKiL--cH~g~V~siAv~~~G~YMaTtG~Dr  315 (545)
T KOG1272|consen  271 -SNGTVSLWSPNSKE-PLVKIL--CHRGPVSSIAVDRGGRYMATTGLDR  315 (545)
T ss_pred             -CCceEEecCCCCcc-hHHHHH--hcCCCcceEEECCCCcEEeeccccc
Confidence             34555555543210 001111  3445467899999999988887654

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=89.42  E-value=16  Score=32.88  Aligned_cols=111  Identities=11%  Similarity=0.114  Sum_probs=75.0

Q ss_pred             CCcccCeEECCCCCEEEEeCCC-cEEEEcCCC----eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccC
Q 018474           93 SQSLLGLTTTKDGGVILCDNEK-GLLKVTEEG----VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGK  167 (355)
Q Consensus        93 ~~p~~gl~~d~~g~L~v~~~~~-gl~~~~~~g----~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~  167 (355)
                      +.++ .+.++|+|..+++...+ .|+..+..|    .-.+......+.++...+|++..++-+.                
T Consensus        48 geI~-~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gt----------------  110 (338)
T KOG0265|consen   48 GEIY-TIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGT----------------  110 (338)
T ss_pred             ceEE-EEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecC----------------
Confidence            4567 78899999988876544 354444222    2222222267888999999987777554                


Q ss_pred             CCCeEEEEeCCCCeEE-EeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCC
Q 018474          168 PYGQLRKYDPKLKETT-VLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKG  221 (355)
Q Consensus       168 ~~g~l~~~dp~~~~~~-~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~  221 (355)
                       .-.++.||.++|+.. .+.....+-|.++.+.-|-.++.+.+..+.+..||+..
T Consensus       111 -Dk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~  164 (338)
T KOG0265|consen  111 -DKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK  164 (338)
T ss_pred             -CceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecc
Confidence             347899999888654 33334456677776667777888888888888898853

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=89.32  E-value=1.1  Score=32.35  Aligned_cols=37  Identities=19%  Similarity=0.320  Sum_probs=26.7

Q ss_pred             cEEEEcCCCeEEEcCCcCCcccEEEccCC-cEEEEeCC
Q 018474          115 GLLKVTEEGVEAIVPDASFTNDVIAASDG-TLYFTVAS  151 (355)
Q Consensus       115 gl~~~~~~g~~~~~~~~~~~~~l~~d~dG-~ly~~d~~  151 (355)
                      .++.++++..+..+....+||+|.+++++ .||+++..
T Consensus        37 ~Vvyyd~~~~~~va~g~~~aNGI~~s~~~k~lyVa~~~   74 (86)
T PF01731_consen   37 NVVYYDGKEVKVVASGFSFANGIAISPDKKYLYVASSL   74 (86)
T ss_pred             eEEEEeCCEeEEeeccCCCCceEEEcCCCCEEEEEecc
Confidence            45555543355556666899999999987 79998765

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=89.25  E-value=22  Score=34.54  Aligned_cols=96  Identities=14%  Similarity=0.130  Sum_probs=58.2

Q ss_pred             CCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeec-cCCCcccCeEECCCCCEEEEeCCCcEEEEc-CCC-e-EEEc
Q 018474           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH-IDSQSLLGLTTTKDGGVILCDNEKGLLKVT-EEG-V-EAIV  128 (355)
Q Consensus        53 ~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~-~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~-~~g-~-~~~~  128 (355)
                      +|.+..-....+.+.+++.||++..++. .|+.++-.. ..+... +=.+.++|.=.++...+|.+++- ++| + .+++
T Consensus        65 ~~rs~~~g~~~d~~~i~s~DGkf~il~k-~~rVE~sv~AH~~A~~-~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~  142 (737)
T KOG1524|consen   65 GGRSSGGGKGSDTLLICSNDGRFVILNK-SARVERSISAHAAAIS-SGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVV  142 (737)
T ss_pred             cccccCCCCCcceEEEEcCCceEEEecc-cchhhhhhhhhhhhhh-hcccCCCCceeeeecCCceEEEEeccchHHHHHh
Confidence            3333333323456777888898877765 666544221 122233 44567888766666667888776 688 4 3344


Q ss_pred             CCcCCcccEEEccCC-cEEEEeC
Q 018474          129 PDASFTNDVIAASDG-TLYFTVA  150 (355)
Q Consensus       129 ~~~~~~~~l~~d~dG-~ly~~d~  150 (355)
                      .....+.+++.+|+. ++.++..
T Consensus       143 Q~~~~v~c~~W~p~S~~vl~c~g  165 (737)
T KOG1524|consen  143 QNEESIRCARWAPNSNSIVFCQG  165 (737)
T ss_pred             hcCceeEEEEECCCCCceEEecC
Confidence            444678888888875 5666643

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=88.68  E-value=20  Score=33.10  Aligned_cols=164  Identities=14%  Similarity=0.120  Sum_probs=82.5

Q ss_pred             CCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEE-eeccCCCcccCeEECCCCCEEEEeCCCcEEEEc--CCC--eEE
Q 018474           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVN-WKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT--EEG--VEA  126 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~-~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~--~~g--~~~  126 (355)
                      ..-.++++-|.++.+..++.|..|..++..+|--.. +........ -++...||+|+.+.....-+++-  .++  ...
T Consensus       194 h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr-~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~  272 (406)
T KOG0295|consen  194 HGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVR-MVRVNQDGTIIASCSNDQTLRVWVVATKQCKAE  272 (406)
T ss_pred             cceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEE-EEEecCCeeEEEecCCCceEEEEEeccchhhhh
Confidence            445566777667777777888999888887774332 221112234 55666788887765554434433  122  111


Q ss_pred             EcCCcCCcccEEEccCCc---EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEE-EeeccccccccEEEeCCCC
Q 018474          127 IVPDASFTNDVIAASDGT---LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT-VLHEGFYFANGIALSKNED  202 (355)
Q Consensus       127 ~~~~~~~~~~l~~d~dG~---ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~-~~~~~~~~pngi~~~~dg~  202 (355)
                      +.....-+..+++.+.-.   +..+.++     .+-..-...+...+.+-.||-.++..- ++......-.+++++|.|+
T Consensus       273 lR~hEh~vEci~wap~~~~~~i~~at~~-----~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gk  347 (406)
T KOG0295|consen  273 LREHEHPVECIAWAPESSYPSISEATGS-----TNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGK  347 (406)
T ss_pred             hhccccceEEEEecccccCcchhhccCC-----CCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCe
Confidence            111100111111111100   0000000     000000111223445666777777532 2223334567899999999


Q ss_pred             EEEEEeCCCCeEEEEEeCCC
Q 018474          203 FVVVCESWKFRCRRYWLKGD  222 (355)
Q Consensus       203 ~l~v~~~~~~~i~~~~~~~~  222 (355)
                      +++-+. .++.|.+|+++..
T Consensus       348 yi~Sca-DDktlrvwdl~~~  366 (406)
T KOG0295|consen  348 YILSCA-DDKTLRVWDLKNL  366 (406)
T ss_pred             EEEEEe-cCCcEEEEEeccc
Confidence            766554 5678999998653

>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]

Probab=88.01  E-value=39  Score=35.79  Aligned_cols=154  Identities=13%  Similarity=0.169  Sum_probs=91.3

Q ss_pred             CCCceEEEeeCCCeEEEEe-cCCEEEEEEcCCCeeEE-eeccCCCcccCeEECC-CCCEEEEeCCCcEEEEc-CCC--eE
Q 018474           52 NHPEDVSVVVSKGALYTAT-RDGWVKYFILHNETLVN-WKHIDSQSLLGLTTTK-DGGVILCDNEKGLLKVT-EEG--VE  125 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~-~~g~i~~~~~~~g~~~~-~~~~~~~p~~gl~~d~-~g~L~v~~~~~gl~~~~-~~g--~~  125 (355)
                      ..+..+..+..++.+|... ....|.+.......... .....-.+. +++.|. .+++|.++.......+. .+|  .+
T Consensus       437 ~~~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~~~~~~~~g~~~~~-~lavD~~~~~~y~tDe~~~~i~v~~~~g~~~~  515 (877)
T KOG1215|consen  437 KNAVALDFDVLNNRIYWADLSDEKICRASQDGSSECELCGDGLCIPE-GLAVDWIGDNIYWTDEGNCLIEVADLDGSSRK  515 (877)
T ss_pred             ccceEEEEEecCCEEEEEeccCCeEeeeccCCCccceEeccCccccC-cEEEEeccCCceecccCCceeEEEEccCCcee
Confidence            4555556665555666543 45666666553322222 222223467 999994 55789888665444443 355  23


Q ss_pred             EEcCC-cCCcccEEEcc-CCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEE-eeccccccccEEEeCCCC
Q 018474          126 AIVPD-ASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV-LHEGFYFANGIALSKNED  202 (355)
Q Consensus       126 ~~~~~-~~~~~~l~~d~-dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~-~~~~~~~pngi~~~~dg~  202 (355)
                      .+... ...|..+++++ .|.+|+++....               . .+-+=..+...... +..+...|||++++--.+
T Consensus       516 vl~~~~l~~~r~~~v~p~~g~~~wtd~~~~---------------~-~i~ra~~dg~~~~~l~~~~~~~p~glt~d~~~~  579 (877)
T KOG1215|consen  516 VLVSKDLDLPRSIAVDPEKGLMFWTDWGQP---------------P-RIERASLDGSERAVLVTNGILWPNGLTIDYETD  579 (877)
T ss_pred             EEEecCCCCccceeeccccCeeEEecCCCC---------------c-hhhhhcCCCCCceEEEeCCccCCCcceEEeecc
Confidence            33332 26899999998 578888887621               0 11111111122222 233467899999998888


Q ss_pred             EEEEEeCCCC-eEEEEEeCCC
Q 018474          203 FVVVCESWKF-RCRRYWLKGD  222 (355)
Q Consensus       203 ~l~v~~~~~~-~i~~~~~~~~  222 (355)
                      .+||++.... .+...+.+|.
T Consensus       580 ~~yw~d~~~~~~i~~~~~~g~  600 (877)
T KOG1215|consen  580 RLYWADAKLDYTIESANMDGQ  600 (877)
T ss_pred             eeEEEcccCCcceeeeecCCC
Confidence            8999998776 6778777653

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=87.89  E-value=19  Score=31.92  Aligned_cols=181  Identities=10%  Similarity=0.057  Sum_probs=96.7

Q ss_pred             EEeeCCCeEEEEecCCEEEEEEcCCC-eeEEeeccCCCcccCeEECCCCCEEEEeCCCc-EEEEc-CCC--eEEEcCCcC
Q 018474           58 SVVVSKGALYTATRDGWVKYFILHNE-TLVNWKHIDSQSLLGLTTTKDGGVILCDNEKG-LLKVT-EEG--VEAIVPDAS  132 (355)
Q Consensus        58 ~~d~~~g~l~~~~~~g~i~~~~~~~g-~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~g-l~~~~-~~g--~~~~~~~~~  132 (355)
                      -...+++.||.+..|.....+-..+| ++-.|.-..+.+. ++.+|.+-+..++.+.+. +...| ++|  +-.+..+ .
T Consensus        17 KyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW-~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~-~   94 (327)
T KOG0643|consen   17 KYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVW-CCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTN-S   94 (327)
T ss_pred             EecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEE-EEEecCCcceeeeccccceeEEEEcCCCcEEEEeecC-C
Confidence            34445667777766654433322233 3444433334566 777776666555544433 33444 567  2222222 4


Q ss_pred             CcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCC-------CCe-EEEeeccccccccEEEeCCCCEE
Q 018474          133 FTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPK-------LKE-TTVLHEGFYFANGIALSKNEDFV  204 (355)
Q Consensus       133 ~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~-------~~~-~~~~~~~~~~pngi~~~~dg~~l  204 (355)
                      .+..+.++.+|++.+......-            ...+.+..||..       ..+ +..+...-..++-..+++-++.+
T Consensus        95 ~Vk~~~F~~~gn~~l~~tD~~m------------g~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i  162 (327)
T KOG0643|consen   95 PVKRVDFSFGGNLILASTDKQM------------GYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI  162 (327)
T ss_pred             eeEEEeeccCCcEEEEEehhhc------------CcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence            5667788888876554322000            112334444432       222 23333333556667788888866


Q ss_pred             EEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474          205 VVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       205 ~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      +.++ ..+.|.+|+...+.. ..+. .+......+++.+.++..++|....
T Consensus       163 i~Gh-e~G~is~~da~~g~~-~v~s-~~~h~~~Ind~q~s~d~T~FiT~s~  210 (327)
T KOG0643|consen  163 IAGH-EDGSISIYDARTGKE-LVDS-DEEHSSKINDLQFSRDRTYFITGSK  210 (327)
T ss_pred             EEec-CCCcEEEEEcccCce-eeec-hhhhccccccccccCCcceEEeccc
Confidence            5554 568899999854211 1110 1112224677889999999998755

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=87.73  E-value=35  Score=34.93  Aligned_cols=144  Identities=10%  Similarity=0.054  Sum_probs=77.8

Q ss_pred             CceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeec----c--CCCcccCeEECCCCCEEEEeCCCcEEEE-cC---CC
Q 018474           54 PEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH----I--DSQSLLGLTTTKDGGVILCDNEKGLLKV-TE---EG  123 (355)
Q Consensus        54 p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~----~--~~~p~~gl~~d~~g~L~v~~~~~gl~~~-~~---~g  123 (355)
                      |..|+.. ..+.+.....+..++.++...+. +....    .  ..... ..++.+.++..++....|-+.+ ..   ++
T Consensus       163 ~~~I~~~-~~ge~~~i~~~~~~~~~~v~~~~-~~~~~~~~~~~Htf~~t-~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~  239 (792)
T KOG1963|consen  163 PKSIVDN-NSGEFKGIVHMCKIHIYFVPKHT-KHTSSRDITVHHTFNIT-CVALSPNERYLAAGDSDGRILVWRDFGSSD  239 (792)
T ss_pred             CccEEEc-CCceEEEEEEeeeEEEEEecccc-eeeccchhhhhhcccce-eEEeccccceEEEeccCCcEEEEecccccc
Confidence            8888888 45555544445557777654433 11110    0  00123 4555566665444333332222 11   11


Q ss_pred             ----eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccc-cccEEEe
Q 018474          124 ----VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYF-ANGIALS  198 (355)
Q Consensus       124 ----~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~-pngi~~~  198 (355)
                          .+.+.=.-..+++++++.+|...++..                 ..+-+.+|..++++ +.+.+.+.. --++.++
T Consensus       240 ~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG-----------------~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS  301 (792)
T KOG1963|consen  240 DSETCTLLHWHHDEVNSLSFSSDGAYLLSGG-----------------REGVLVLWQLETGK-KQFLPRLGSPILHIVVS  301 (792)
T ss_pred             ccccceEEEecccccceeEEecCCceEeecc-----------------cceEEEEEeecCCC-cccccccCCeeEEEEEc
Confidence                121111114689999999995544422                 24556777777777 444445443 3678999


Q ss_pred             CCCCEEEEEeCCCCeEEEEEe
Q 018474          199 KNEDFVVVCESWKFRCRRYWL  219 (355)
Q Consensus       199 ~dg~~l~v~~~~~~~i~~~~~  219 (355)
                      ||+. +|..-..++.|..+..
T Consensus       302 ~ds~-~~sl~~~DNqI~li~~  321 (792)
T KOG1963|consen  302 PDSD-LYSLVLEDNQIHLIKA  321 (792)
T ss_pred             CCCC-eEEEEecCceEEEEec
Confidence            9998 4444445678877765

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=87.38  E-value=24  Score=32.69  Aligned_cols=101  Identities=11%  Similarity=0.145  Sum_probs=65.4

Q ss_pred             CCCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEE-cC-CC--
Q 018474           48 EGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKV-TE-EG--  123 (355)
Q Consensus        48 ~~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~-~~-~g--  123 (355)
                      +|....-.++.+. +.+.+|.++.|..|..+|..+|....-...+-..+ ++...+.-+|.++.......++ |+ ++  
T Consensus       257 ~GHt~~Vs~V~w~-d~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~-~i~~~~~~~Ll~~gssdr~irl~DPR~~~g  334 (423)
T KOG0313|consen  257 EGHTEPVSSVVWS-DATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLN-CISYSPLSKLLASGSSDRHIRLWDPRTGDG  334 (423)
T ss_pred             cccccceeeEEEc-CCCceEeecccceEEEEEeecccceeeeecCccee-EeecccccceeeecCCCCceeecCCCCCCC
Confidence            4666666788888 68899999999999999998886543322222233 5666666777777666555554 54 43  


Q ss_pred             -e--EEEcCCcCCcccEEEccCC-cEEEEeC
Q 018474          124 -V--EAIVPDASFTNDVIAASDG-TLYFTVA  150 (355)
Q Consensus       124 -~--~~~~~~~~~~~~l~~d~dG-~ly~~d~  150 (355)
                       +  ..+....+++.++...|.. ..+++.+
T Consensus       335 s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S  365 (423)
T KOG0313|consen  335 SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGS  365 (423)
T ss_pred             ceeEEeeecchhhhhheecCCCCceEEEEEe
Confidence             2  2233333788888888765 4555433

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=87.33  E-value=19  Score=33.48  Aligned_cols=150  Identities=15%  Similarity=0.144  Sum_probs=83.2

Q ss_pred             CCceEEEeeCCCeEEEEecCCEEEEEEc--CCCeeEEe--eccCCCcccCeEECCC-CCEEEEeCCCcEEEEc--C-C-C
Q 018474           53 HPEDVSVVVSKGALYTATRDGWVKYFIL--HNETLVNW--KHIDSQSLLGLTTTKD-GGVILCDNEKGLLKVT--E-E-G  123 (355)
Q Consensus        53 ~p~~i~~d~~~g~l~~~~~~g~i~~~~~--~~g~~~~~--~~~~~~p~~gl~~d~~-g~L~v~~~~~gl~~~~--~-~-g  123 (355)
                      .+..+...+++..+++++...+.+.++-  .....+.+  ....-++. .+.+..+ -...|++..+..+.++  . . +
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~-ai~~~~~~~sv~v~dkagD~~~~di~s~~~~  142 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPT-AISFIREDTSVLVADKAGDVYSFDILSADSG  142 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcc-eeeeeeccceEEEEeecCCceeeeeeccccc
Confidence            3444444435666777777666544433  22112222  22234566 7776644 3577777666667666  2 2 5


Q ss_pred             -eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeec-cccccccEEEeCCC
Q 018474          124 -VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE-GFYFANGIALSKNE  201 (355)
Q Consensus       124 -~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~-~~~~pngi~~~~dg  201 (355)
                       .+.+......+.++++++|+++.++...               ...-++.+|.. +..++.+-- .-.+-..+++.++.
T Consensus       143 ~~~~~lGhvSml~dVavS~D~~~IitaDR---------------DEkIRvs~ypa-~f~IesfclGH~eFVS~isl~~~~  206 (390)
T KOG3914|consen  143 RCEPILGHVSMLLDVAVSPDDQFIITADR---------------DEKIRVSRYPA-TFVIESFCLGHKEFVSTISLTDNY  206 (390)
T ss_pred             CcchhhhhhhhhheeeecCCCCEEEEecC---------------CceEEEEecCc-ccchhhhccccHhheeeeeeccCc
Confidence             4444444578889999999876665332               00224555542 222222211 11334567776653


Q ss_pred             CEEEEEeCCCCeEEEEEeCC
Q 018474          202 DFVVVCESWKFRCRRYWLKG  221 (355)
Q Consensus       202 ~~l~v~~~~~~~i~~~~~~~  221 (355)
                        ++++..+.+.|+.|++..
T Consensus       207 --~LlS~sGD~tlr~Wd~~s  224 (390)
T KOG3914|consen  207 --LLLSGSGDKTLRLWDITS  224 (390)
T ss_pred             --eeeecCCCCcEEEEeccc
Confidence              578888899999999854

>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A

Probab=87.30  E-value=1.3  Score=26.70  Aligned_cols=26  Identities=23%  Similarity=0.282  Sum_probs=18.8

Q ss_pred             ceEEEeeCCCeEEEEecCCEEEEEEcCC
Q 018474           55 EDVSVVVSKGALYTATRDGWVKYFILHN   82 (355)
Q Consensus        55 ~~i~~d~~~g~l~~~~~~g~i~~~~~~~   82 (355)
                      .+++++  ++.+|+++.+|.++.+|+++
T Consensus        15 ~~~~v~--~g~vyv~~~dg~l~ald~~t   40 (40)
T PF13570_consen   15 SSPAVA--GGRVYVGTGDGNLYALDAAT   40 (40)
T ss_dssp             S--EEC--TSEEEEE-TTSEEEEEETT-
T ss_pred             cCCEEE--CCEEEEEcCCCEEEEEeCCC
Confidence            445665  78999999999999999753

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=87.20  E-value=22  Score=34.71  Aligned_cols=109  Identities=12%  Similarity=0.118  Sum_probs=55.3

Q ss_pred             EEEeeCCCeEEEEecCCEEEEEEcCCCee-EEeeccCCC---cccCeEECCCCCEEEEeC--------------CCcEEE
Q 018474           57 VSVVVSKGALYTATRDGWVKYFILHNETL-VNWKHIDSQ---SLLGLTTTKDGGVILCDN--------------EKGLLK  118 (355)
Q Consensus        57 i~~d~~~g~l~~~~~~g~i~~~~~~~g~~-~~~~~~~~~---p~~gl~~d~~g~L~v~~~--------------~~gl~~  118 (355)
                      +... ++|.|+++.. +.+..+|. .|+. ..+....+.   =+ .+...++|++++..+              ...++.
T Consensus       153 ~~~l-~nG~ll~~~~-~~~~e~D~-~G~v~~~~~l~~~~~~~HH-D~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ive  228 (477)
T PF05935_consen  153 FKQL-PNGNLLIGSG-NRLYEIDL-LGKVIWEYDLPGGYYDFHH-DIDELPNGNLLILASETKYVDEDKDVDTVEDVIVE  228 (477)
T ss_dssp             EEE--TTS-EEEEEB-TEEEEE-T-T--EEEEEE--TTEE-B-S--EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEE
T ss_pred             eeEc-CCCCEEEecC-CceEEEcC-CCCEEEeeecCCccccccc-ccEECCCCCEEEEEeecccccCCCCccEecCEEEE
Confidence            3444 5666666655 66788887 4543 333222211   24 667778998665433              235788


Q ss_pred             EcCCC--eEEEcC--------C----------c---------CCcccEEEcc-CCcEEEEeCCCCCCCccccccccccCC
Q 018474          119 VTEEG--VEAIVP--------D----------A---------SFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKP  168 (355)
Q Consensus       119 ~~~~g--~~~~~~--------~----------~---------~~~~~l~~d~-dG~ly~~d~~~~~~~~~~~~~~~~~~~  168 (355)
                      ++++|  +..+..        .          .         .+.|++..++ ++.|.++...                 
T Consensus       229 vd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~-----------------  291 (477)
T PF05935_consen  229 VDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRH-----------------  291 (477)
T ss_dssp             E-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETT-----------------
T ss_pred             ECCCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCc-----------------
Confidence            88777  333210        0          0         5678888887 6688887544                 


Q ss_pred             CCeEEEEeCCCCeEEEee
Q 018474          169 YGQLRKYDPKLKETTVLH  186 (355)
Q Consensus       169 ~g~l~~~dp~~~~~~~~~  186 (355)
                      ...|+.+|.+++++....
T Consensus       292 ~s~V~~Id~~t~~i~Wil  309 (477)
T PF05935_consen  292 QSAVIKIDYRTGKIKWIL  309 (477)
T ss_dssp             T-EEEEEE-TTS-EEEEE
T ss_pred             ceEEEEEECCCCcEEEEe
Confidence            447888887788777654

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PF14339 DUF4394: Domain of unknown function (DUF4394)

Probab=86.80  E-value=20  Score=31.18  Aligned_cols=71  Identities=11%  Similarity=0.155  Sum_probs=49.4

Q ss_pred             CCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEe--ecc----CCCcccCeEECC-CCCEEEEeCCCcEEEEcC-CC
Q 018474           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNW--KHI----DSQSLLGLTTTK-DGGVILCDNEKGLLKVTE-EG  123 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~--~~~----~~~p~~gl~~d~-~g~L~v~~~~~gl~~~~~-~g  123 (355)
                      ..--+|.+.|.+|.||.-...++||.+|+.+|....+  ...    .+... ++-|.+ -+||-|....+.-+|+++ +|
T Consensus        27 e~l~GID~Rpa~G~LYgl~~~g~lYtIn~~tG~aT~vg~s~~~~al~g~~~-gvDFNP~aDRlRvvs~~GqNlR~npdtG  105 (236)
T PF14339_consen   27 ESLVGIDFRPANGQLYGLGSTGRLYTINPATGAATPVGASPLTVALSGTAF-GVDFNPAADRLRVVSNTGQNLRLNPDTG  105 (236)
T ss_pred             CeEEEEEeecCCCCEEEEeCCCcEEEEECCCCeEEEeecccccccccCceE-EEecCcccCcEEEEccCCcEEEECCCCC
Confidence            3445667778899999887889999999999987766  211    12345 566654 357877655556788884 56

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=86.79  E-value=4  Score=40.22  Aligned_cols=142  Identities=17%  Similarity=0.175  Sum_probs=74.0

Q ss_pred             eEEEEecCCEEEEEEcCCCeeE-EeeccCCCcccCeEECCCCCEEEEeCCCcEEEEc-C-CCeEEEcCC--c--CCcccE
Q 018474           65 ALYTATRDGWVKYFILHNETLV-NWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT-E-EGVEAIVPD--A--SFTNDV  137 (355)
Q Consensus        65 ~l~~~~~~g~i~~~~~~~g~~~-~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~-~-~g~~~~~~~--~--~~~~~l  137 (355)
                      .|.+++++-.|..+|..+++.. .+....+.+. ++++.++|+...+-..+|-+++. + .+-+.+...  .  ..-..+
T Consensus       692 vLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf-~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi  770 (1012)
T KOG1445|consen  692 VLAVASYDSTIELWDLANAKLYSRLVGHTDQIF-GIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARI  770 (1012)
T ss_pred             HhhhhhccceeeeeehhhhhhhheeccCcCcee-EEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeE
Confidence            3445667778888887666432 2222235688 99999999988776666655554 4 332222111  1  111223


Q ss_pred             EEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeec-cc-cccccE--EEeCCCCEEEEEeCCCCe
Q 018474          138 IAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE-GF-YFANGI--ALSKNEDFVVVCESWKFR  213 (355)
Q Consensus       138 ~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~-~~-~~pngi--~~~~dg~~l~v~~~~~~~  213 (355)
                      ...=||++.+...-.+             .....+..||..+-....+.. .+ ..|.-+  ..++|.+.++++.-+...
T Consensus       771 ~wacdgr~viv~Gfdk-------------~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~  837 (1012)
T KOG1445|consen  771 LWACDGRIVIVVGFDK-------------SSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRF  837 (1012)
T ss_pred             EEEecCcEEEEecccc-------------cchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCce
Confidence            3444554444332111             112234455543322111110 00 011111  357788899999888889


Q ss_pred             EEEEEeC
Q 018474          214 CRRYWLK  220 (355)
Q Consensus       214 i~~~~~~  220 (355)
                      |+.|.+-
T Consensus       838 v~~yEv~  844 (1012)
T KOG1445|consen  838 VNMYEVI  844 (1012)
T ss_pred             EEEEEec
Confidence            9999873

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=86.64  E-value=2.6  Score=39.98  Aligned_cols=64  Identities=22%  Similarity=0.365  Sum_probs=34.1

Q ss_pred             cccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCc--ceeEecc--------------cCCCCcCceEECCCC-CEEEEee
Q 018474          192 ANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAG--ILDAFIE--------------NLPGGPDNINLAPDG-SFWIGLI  254 (355)
Q Consensus       192 pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~--~~~~~~~--------------~~~g~p~~i~~d~~G-~lwv~~~  254 (355)
                      +.-|.+|.|.++||++....+.|++||++....-  .-++++.              .+.|-|.-+.++-|| |+||++.
T Consensus       314 itDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS  393 (461)
T PF05694_consen  314 ITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS  393 (461)
T ss_dssp             ---EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred             eEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence            4568899999999999999999999999764210  1112221              122345667788899 6999875


Q ss_pred             c
Q 018474          255 K  255 (355)
Q Consensus       255 ~  255 (355)
                      -
T Consensus       394 L  394 (461)
T PF05694_consen  394 L  394 (461)
T ss_dssp             -
T ss_pred             c
Confidence            3

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=85.77  E-value=26  Score=34.11  Aligned_cols=70  Identities=19%  Similarity=0.143  Sum_probs=39.5

Q ss_pred             CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecc-ccccccEEEeCCCCEEEEEeCC
Q 018474          132 SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG-FYFANGIALSKNEDFVVVCESW  210 (355)
Q Consensus       132 ~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~-~~~pngi~~~~dg~~l~v~~~~  210 (355)
                      ..+|.+++.+||....+.+.                 .|.|-.||=.+.++.-+... +..--.++++|||+.+.... .
T Consensus       291 g~in~f~FS~DG~~LA~VSq-----------------DGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGG-E  352 (636)
T KOG2394|consen  291 GSINEFAFSPDGKYLATVSQ-----------------DGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGG-E  352 (636)
T ss_pred             ccccceeEcCCCceEEEEec-----------------CceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecC-C
Confidence            57999999999987777654                 34344444334433211111 12234688999999554433 2


Q ss_pred             CCeEEEEEe
Q 018474          211 KFRCRRYWL  219 (355)
Q Consensus       211 ~~~i~~~~~  219 (355)
                      +.-|.+|..
T Consensus       353 DDLVtVwSf  361 (636)
T KOG2394|consen  353 DDLVTVWSF  361 (636)
T ss_pred             cceEEEEEe
Confidence            344555554

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=85.64  E-value=44  Score=33.91  Aligned_cols=189  Identities=14%  Similarity=0.168  Sum_probs=85.9

Q ss_pred             CCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeec-cCCCcccCeEECC---CCCEEEEeCCCcEEEE-c-CCC-
Q 018474           51 VNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH-IDSQSLLGLTTTK---DGGVILCDNEKGLLKV-T-EEG-  123 (355)
Q Consensus        51 ~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~-~~~~p~~gl~~d~---~g~L~v~~~~~gl~~~-~-~~g-  123 (355)
                      -.+-.++++.|++..|-.|...|.|..++..+-+...+.. ....+. ++-+..   ...|......++++.+ | +.. 
T Consensus       459 r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEil-cLeyS~p~~~~kLLASasrdRlIHV~Dv~rny  537 (1080)
T KOG1408|consen  459 RFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEIL-CLEYSFPVLTNKLLASASRDRLIHVYDVKRNY  537 (1080)
T ss_pred             ccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeE-EEeecCchhhhHhhhhccCCceEEEEeccccc
Confidence            4677889999777778788878888888763322221111 011233 333321   1123332223344443 3 111 


Q ss_pred             --eEEEcCCcCCcccEEEccCC-cEE-EEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeC
Q 018474          124 --VEAIVPDASFTNDVIAASDG-TLY-FTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSK  199 (355)
Q Consensus       124 --~~~~~~~~~~~~~l~~d~dG-~ly-~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~  199 (355)
                        ++.+......+.++.+...| +.= ++-...    +..++........|.++.-...+-.-+       .-..++++|
T Consensus       538 ~l~qtld~HSssITsvKFa~~gln~~MiscGAD----ksimFr~~qk~~~g~~f~r~t~t~~kt-------TlYDm~Vdp  606 (1080)
T KOG1408|consen  538 DLVQTLDGHSSSITSVKFACNGLNRKMISCGAD----KSIMFRVNQKASSGRLFPRHTQTLSKT-------TLYDMAVDP  606 (1080)
T ss_pred             chhhhhcccccceeEEEEeecCCceEEEeccCc----hhhheehhccccCceeccccccccccc-------eEEEeeeCC
Confidence              33333333455555554433 222 111110    111222222222233332111111101       123466777


Q ss_pred             CCCEEEEEeCCCCeEEEEEeCCCCCcceeEecc--cCCCCcCceEECCCCCEEEEeec
Q 018474          200 NEDFVVVCESWKFRCRRYWLKGDRAGILDAFIE--NLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       200 dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      .-+ +.++.-....|..|+++..+  ..+.|-.  ...|-+--+..|+.| +|+++.-
T Consensus       607 ~~k-~v~t~cQDrnirif~i~sgK--q~k~FKgs~~~eG~lIKv~lDPSg-iY~atSc  660 (1080)
T KOG1408|consen  607 TSK-LVVTVCQDRNIRIFDIESGK--QVKSFKGSRDHEGDLIKVILDPSG-IYLATSC  660 (1080)
T ss_pred             Ccc-eEEEEecccceEEEeccccc--eeeeecccccCCCceEEEEECCCc-cEEEEee
Confidence            776 44444566788899986543  2333432  122334446789988 6666644

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=85.50  E-value=24  Score=35.33  Aligned_cols=56  Identities=20%  Similarity=0.233  Sum_probs=42.3

Q ss_pred             CcccCeEECCCCC-EEEEeCCCcEEEEcC-CC--eEEEcCCcCCcccEEEccCCcEEEEeCC
Q 018474           94 QSLLGLTTTKDGG-VILCDNEKGLLKVTE-EG--VEAIVPDASFTNDVIAASDGTLYFTVAS  151 (355)
Q Consensus        94 ~p~~gl~~d~~g~-L~v~~~~~gl~~~~~-~g--~~~~~~~~~~~~~l~~d~dG~ly~~d~~  151 (355)
                      -++ .+++.+||. |.++ .+..++.+|. +|  +.++...-..++.++.+.||..+.+.+.
T Consensus        14 ci~-d~afkPDGsqL~lA-Ag~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~a   73 (1081)
T KOG1538|consen   14 CIN-DIAFKPDGTQLILA-AGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSA   73 (1081)
T ss_pred             chh-eeEECCCCceEEEe-cCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCC
Confidence            356 789999996 5555 4668999995 66  6666555567999999999999877554

>smart00564 PQQ beta-propeller repeat

Probab=85.29  E-value=1.8  Score=24.44  Aligned_cols=25  Identities=20%  Similarity=0.380  Sum_probs=21.2

Q ss_pred             CCCeEEEEecCCEEEEEEcCCCeeE
Q 018474           62 SKGALYTATRDGWVKYFILHNETLV   86 (355)
Q Consensus        62 ~~g~l~~~~~~g~i~~~~~~~g~~~   86 (355)
                      .++.+|+++.+|.++.+|.++|+..
T Consensus         5 ~~~~v~~~~~~g~l~a~d~~~G~~~   29 (33)
T smart00564        5 SDGTVYVGSTDGTLYALDAKTGEIL   29 (33)
T ss_pred             ECCEEEEEcCCCEEEEEEcccCcEE
Confidence            4668999999999999999888653

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=84.82  E-value=12  Score=34.18  Aligned_cols=171  Identities=12%  Similarity=0.094  Sum_probs=78.1

Q ss_pred             CCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeec-cCCCcccCeEECCCCCEEEEeCCCcEEEE-c-CCC--eEEE
Q 018474           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH-IDSQSLLGLTTTKDGGVILCDNEKGLLKV-T-EEG--VEAI  127 (355)
Q Consensus        53 ~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~-~~~~p~~gl~~d~~g~L~v~~~~~gl~~~-~-~~g--~~~~  127 (355)
                      +--++..|  ++.+..|..++.|..+|.++-....... ..+... ++  +-+.++.|..+.+..+++ | .+|  ++++
T Consensus       199 gVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVL-CL--qyd~rviisGSSDsTvrvWDv~tge~l~tl  273 (499)
T KOG0281|consen  199 GVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVL-CL--QYDERVIVSGSSDSTVRVWDVNTGEPLNTL  273 (499)
T ss_pred             ceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEE-ee--eccceEEEecCCCceEEEEeccCCchhhHH
Confidence            33444454  4456666666766666654333222111 112333 44  445568887666665555 4 466  5544


Q ss_pred             cCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEE---EeeccccccccEEEeCCCCEE
Q 018474          128 VPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT---VLHEGFYFANGIALSKNEDFV  204 (355)
Q Consensus       128 ~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~---~~~~~~~~pngi~~~~dg~~l  204 (355)
                      ...-..+-++.+. + .+.++.+.               ..+-+++..+..+ ..+   ++......-|-+.+  |.+ .
T Consensus       274 ihHceaVLhlrf~-n-g~mvtcSk---------------DrsiaVWdm~sps-~it~rrVLvGHrAaVNvVdf--d~k-y  332 (499)
T KOG0281|consen  274 IHHCEAVLHLRFS-N-GYMVTCSK---------------DRSIAVWDMASPT-DITLRRVLVGHRAAVNVVDF--DDK-Y  332 (499)
T ss_pred             hhhcceeEEEEEe-C-CEEEEecC---------------CceeEEEeccCch-HHHHHHHHhhhhhheeeecc--ccc-e
Confidence            3322233333332 1 23333322               0122344443211 111   11111222344444  444 6


Q ss_pred             EEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEEC-CCCCEEEEeec
Q 018474          205 VVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLA-PDGSFWIGLIK  255 (355)
Q Consensus       205 ~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d-~~G~lwv~~~~  255 (355)
                      +++.++...|..++.+..     + |+..+.|.-+|++.- -.|++-|+...
T Consensus       333 IVsASgDRTikvW~~st~-----e-fvRtl~gHkRGIAClQYr~rlvVSGSS  378 (499)
T KOG0281|consen  333 IVSASGDRTIKVWSTSTC-----E-FVRTLNGHKRGIACLQYRDRLVVSGSS  378 (499)
T ss_pred             EEEecCCceEEEEeccce-----e-eehhhhcccccceehhccCeEEEecCC
Confidence            777777777877776321     1 233444556777643 24556655433

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=84.52  E-value=42  Score=32.79  Aligned_cols=115  Identities=13%  Similarity=0.187  Sum_probs=67.8

Q ss_pred             EEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeE--E--CCCCCEEEEeCCCcEEEEc-CCC-e-EEEcCCcCCcccEE
Q 018474           66 LYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLT--T--TKDGGVILCDNEKGLLKVT-EEG-V-EAIVPDASFTNDVI  138 (355)
Q Consensus        66 l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~--~--d~~g~L~v~~~~~gl~~~~-~~g-~-~~~~~~~~~~~~l~  138 (355)
                      +..|+..|.|..++...|++......+.++. ...  .  +.-|.||-+.....+..++ +++ . ...-.....+.+++
T Consensus        73 lvlgt~~g~v~~ys~~~g~it~~~st~~h~~-~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~  151 (541)
T KOG4547|consen   73 LVLGTPQGSVLLYSVAGGEITAKLSTDKHYG-NVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLC  151 (541)
T ss_pred             EEeecCCccEEEEEecCCeEEEEEecCCCCC-cceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEE
Confidence            4557788888888888888776554433332 222  2  2345666665443444455 345 2 22222336788999


Q ss_pred             EccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecccccc-ccEEEeCC
Q 018474          139 AASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFA-NGIALSKN  200 (355)
Q Consensus       139 ~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~p-ngi~~~~d  200 (355)
                      +.+||.+.++-+                   +.+-.||-+++++....++...| +.+.+..+
T Consensus       152 is~D~~~l~~as-------------------~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~  195 (541)
T KOG4547|consen  152 ISPDGKILLTAS-------------------RQIKVLDIETKEVVITFTGHGSPVRTLSFTTL  195 (541)
T ss_pred             EcCCCCEEEecc-------------------ceEEEEEccCceEEEEecCCCcceEEEEEEEe
Confidence            999997776533                   35777887788776555554433 33444433

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=83.60  E-value=55  Score=33.36  Aligned_cols=166  Identities=14%  Similarity=0.123  Sum_probs=83.7

Q ss_pred             EEEEecCCEEEEEEcCCCeeEEeecc--CCCcccCeEECCCCCEEEEeCCC-cEEEEc--C-CC-eEEEcCCcCCcccEE
Q 018474           66 LYTATRDGWVKYFILHNETLVNWKHI--DSQSLLGLTTTKDGGVILCDNEK-GLLKVT--E-EG-VEAIVPDASFTNDVI  138 (355)
Q Consensus        66 l~~~~~~g~i~~~~~~~g~~~~~~~~--~~~p~~gl~~d~~g~L~v~~~~~-gl~~~~--~-~g-~~~~~~~~~~~~~l~  138 (355)
                      |-+|-.||-|..++..++.. .+...  ..... .|.+|..|..++..+.+ .|+.+|  . .| .+.-... ..+.+.-
T Consensus        80 lAVGYaDGsVqif~~~s~~~-~~tfngHK~AVt-~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHk-d~iT~~~  156 (888)
T KOG0306|consen   80 LAVGYADGSVQIFSLESEEI-LITFNGHKAAVT-TLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHK-DSITQAL  156 (888)
T ss_pred             EEEEecCceEEeeccCCCce-eeeecccccceE-EEEEcccCceEeecCCCccEEEEEeccceeeEEeecch-HHHhHHh
Confidence            45677799888888755522 22222  23355 78899888776665444 466666  2 44 3332212 1222222


Q ss_pred             EccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCe-EEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEE
Q 018474          139 AASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE-TTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRY  217 (355)
Q Consensus       139 ~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~-~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~  217 (355)
                      +-.+..+.++.+.                 .+.+-.||.++.. +++....-..-.++++++  + +.++......+..|
T Consensus       157 F~~~~~~lvS~sK-----------------Ds~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~-~lvt~~~dse~~v~  216 (888)
T KOG0306|consen  157 FLNGDSFLVSVSK-----------------DSMIKFWDLETQHCFETHVDHRGEIWALVLDE--K-LLVTAGTDSELKVW  216 (888)
T ss_pred             ccCCCeEEEEecc-----------------CceEEEEecccceeeeEEecccceEEEEEEec--c-eEEEEecCCceEEE
Confidence            2223344454332                 2344456665542 233332223345677776  3 45555555666666


Q ss_pred             Ee--CCCC--------CcceeEecccCCCCcCceEECCCCCEEEEee
Q 018474          218 WL--KGDR--------AGILDAFIENLPGGPDNINLAPDGSFWIGLI  254 (355)
Q Consensus       218 ~~--~~~~--------~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~  254 (355)
                      ++  +...        ....-.+.....+.+.+++.|.++++.+.-.
T Consensus       217 ~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g  263 (888)
T KOG0306|consen  217 ELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQG  263 (888)
T ss_pred             EeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEec
Confidence            65  1111        1111122222334577888998888666543

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=83.47  E-value=40  Score=31.67  Aligned_cols=88  Identities=10%  Similarity=0.060  Sum_probs=43.9

Q ss_pred             CCeEEEEe--cCCEEEEEEcCC--CeeEEeeccCCCcccCe-EECCCCCEEEEeCC------------CcEEEEcC-CC-
Q 018474           63 KGALYTAT--RDGWVKYFILHN--ETLVNWKHIDSQSLLGL-TTTKDGGVILCDNE------------KGLLKVTE-EG-  123 (355)
Q Consensus        63 ~g~l~~~~--~~g~i~~~~~~~--g~~~~~~~~~~~p~~gl-~~d~~g~L~v~~~~------------~gl~~~~~-~g-  123 (355)
                      ++.+|+..  ....++++|.+.  +++.........+..+. ...-++.|||....            ..+++||. +. 
T Consensus        38 ~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~  117 (376)
T PRK14131         38 NNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNS  117 (376)
T ss_pred             CCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCE
Confidence            56788732  235578888743  45655443221111022 22246789986432            23778884 44 


Q ss_pred             eEEEcCC-cCCc-ccEEEc-cCCcEEEEeC
Q 018474          124 VEAIVPD-ASFT-NDVIAA-SDGTLYFTVA  150 (355)
Q Consensus       124 ~~~~~~~-~~~~-~~l~~d-~dG~ly~~d~  150 (355)
                      .+.+... .... ...++. -++.||+...
T Consensus       118 W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG  147 (376)
T PRK14131        118 WQKLDTRSPVGLAGHVAVSLHNGKAYITGG  147 (376)
T ss_pred             EEeCCCCCCCcccceEEEEeeCCEEEEECC
Confidence            4444421 1111 122222 5789998644

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=83.46  E-value=34  Score=30.86  Aligned_cols=36  Identities=14%  Similarity=0.076  Sum_probs=28.0

Q ss_pred             CceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEee
Q 018474           54 PEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWK   89 (355)
Q Consensus        54 p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~   89 (355)
                      +-++++..++..+|++..++.+..+|..+++...+.
T Consensus        75 vL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~  110 (347)
T KOG0647|consen   75 VLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVA  110 (347)
T ss_pred             eEEEEEccCCceEEeeccCCceEEEEccCCCeeeee
Confidence            456777756677889999999999999888766553

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.15  E-value=52  Score=32.78  Aligned_cols=26  Identities=31%  Similarity=0.479  Sum_probs=20.4

Q ss_pred             cccccEEEeCCCCEEEEEeCCCCeEE
Q 018474          190 YFANGIALSKNEDFVVVCESWKFRCR  215 (355)
Q Consensus       190 ~~pngi~~~~dg~~l~v~~~~~~~i~  215 (355)
                      ..|.-++-+|+|+++.++..+...|+
T Consensus       352 iyPq~L~hsPNGrfV~VcgdGEyiIy  377 (794)
T KOG0276|consen  352 IYPQTLAHSPNGRFVVVCGDGEYIIY  377 (794)
T ss_pred             cchHHhccCCCCcEEEEecCccEEEE
Confidence            46888999999999999876655443

>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller

Probab=82.84  E-value=1.1  Score=26.81  Aligned_cols=20  Identities=25%  Similarity=0.521  Sum_probs=16.0

Q ss_pred             CCcccEEEccCCcEEEEeCC
Q 018474          132 SFTNDVIAASDGTLYFTVAS  151 (355)
Q Consensus       132 ~~~~~l~~d~dG~ly~~d~~  151 (355)
                      ..+++|++|++|++|++-.+
T Consensus        13 ~~~~~IavD~~GNiYv~G~T   32 (38)
T PF06739_consen   13 DYGNGIAVDSNGNIYVTGYT   32 (38)
T ss_pred             eeEEEEEECCCCCEEEEEee
Confidence            45888999999999997543

SBBP stands for Seven Bladed Beta Propeller.

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=82.70  E-value=5  Score=38.01  Aligned_cols=80  Identities=16%  Similarity=0.169  Sum_probs=43.3

Q ss_pred             CCeEEEEeCCCCeEEEe-eccccccccEEEeCCCCEEEEEeCC-CCeEEEEEeCCCCCcceeEecccCCCCcCceEECCC
Q 018474          169 YGQLRKYDPKLKETTVL-HEGFYFANGIALSKNEDFVVVCESW-KFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPD  246 (355)
Q Consensus       169 ~g~l~~~dp~~~~~~~~-~~~~~~pngi~~~~dg~~l~v~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~  246 (355)
                      .|.+..|.|+..+.-+- ......-++|+++++|+  |.+.++ ...+-.||+..-.  +...+.  .|-...++.++..
T Consensus       272 nGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~--YMaTtG~Dr~~kIWDlR~~~--ql~t~~--tp~~a~~ls~Sqk  345 (545)
T KOG1272|consen  272 NGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGR--YMATTGLDRKVKIWDLRNFY--QLHTYR--TPHPASNLSLSQK  345 (545)
T ss_pred             CceEEecCCCCcchHHHHHhcCCCcceEEECCCCc--EEeecccccceeEeeecccc--ccceee--cCCCccccccccc
Confidence            56788888876542111 11223347899999997  344444 4456677775422  222222  1222355677766


Q ss_pred             CCEEEEee
Q 018474          247 GSFWIGLI  254 (355)
Q Consensus       247 G~lwv~~~  254 (355)
                      |.+-++..
T Consensus       346 glLA~~~G  353 (545)
T KOG1272|consen  346 GLLALSYG  353 (545)
T ss_pred             cceeeecC
Confidence            75555443

>PF01011 PQQ: PQQ enzyme repeat family

Probab=82.65  E-value=2.4  Score=25.20  Aligned_cols=23  Identities=22%  Similarity=0.459  Sum_probs=19.9

Q ss_pred             CeEEEEecCCEEEEEEcCCCeeE
Q 018474           64 GALYTATRDGWVKYFILHNETLV   86 (355)
Q Consensus        64 g~l~~~~~~g~i~~~~~~~g~~~   86 (355)
                      |.+|+++.+|.|+.+|.++|+..
T Consensus         1 ~~v~~~~~~g~l~AlD~~TG~~~   23 (38)
T PF01011_consen    1 GRVYVGTPDGYLYALDAKTGKVL   23 (38)
T ss_dssp             TEEEEETTTSEEEEEETTTTSEE
T ss_pred             CEEEEeCCCCEEEEEECCCCCEE
Confidence            46899988999999999999754

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=82.60  E-value=23  Score=35.21  Aligned_cols=68  Identities=9%  Similarity=0.177  Sum_probs=42.2

Q ss_pred             CCCceEEEeeCCCeEEEE-ecCCEEEEEEcCCCe-eEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEcC
Q 018474           52 NHPEDVSVVVSKGALYTA-TRDGWVKYFILHNET-LVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE  121 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~-~~~g~i~~~~~~~g~-~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~  121 (355)
                      ..--+++.. +.+.++++ ...+-|..+|+.+++ ..++.-...+.. .+.++++|+-.+..+.+|.+++-.
T Consensus       172 ~siYSLA~N-~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr-~ll~~dDGt~~ls~sSDgtIrlWd  241 (735)
T KOG0308|consen  172 DSIYSLAMN-QTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVR-VLLVNDDGTRLLSASSDGTIRLWD  241 (735)
T ss_pred             cceeeeecC-CcceEEEecCcccceEEeccccccceeeeeccccceE-EEEEcCCCCeEeecCCCceEEeee
Confidence            334456665 55666664 446777888998764 333321223466 788888997666666677777753

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=82.32  E-value=44  Score=31.33  Aligned_cols=52  Identities=4%  Similarity=0.022  Sum_probs=35.4

Q ss_pred             CCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCC
Q 018474          169 YGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKG  221 (355)
Q Consensus       169 ~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~  221 (355)
                      ...+..||-.||+...-....-.-..+.++.||. ++++......|..+++..
T Consensus       153 Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~  204 (472)
T KOG0303|consen  153 DNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRR  204 (472)
T ss_pred             CceEEEEeccCCceeeecCCCCeEEEEEeccCCc-eeeeecccceeEEEcCCC
Confidence            4568888888887543332222234578899998 677777778899998753

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=82.22  E-value=46  Score=31.53  Aligned_cols=149  Identities=12%  Similarity=0.081  Sum_probs=66.9

Q ss_pred             CeEECCCCCEEE-E-eCCCc----EEEEc-CCC--eEEEcCCcCCcccEEEccCCc-EEEEeCCCCCCCccccccccccC
Q 018474           98 GLTTTKDGGVIL-C-DNEKG----LLKVT-EEG--VEAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGK  167 (355)
Q Consensus        98 gl~~d~~g~L~v-~-~~~~g----l~~~~-~~g--~~~~~~~~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~  167 (355)
                      ++.+.++|+.++ + +.++.    ++.++ .+|  +.-.... .....+...+||+ +|.+.........       ...
T Consensus       128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~-------~~~  199 (414)
T PF02897_consen  128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTS-------DSG  199 (414)
T ss_dssp             EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS--------CCG
T ss_pred             eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccc-------cCC
Confidence            356678887443 3 22222    55556 466  2211111 1122388888874 4555432100000       001


Q ss_pred             CCCeEEEEeCCCCeE--EEeeccccc---cccEEEeCCCCEEEEEeCC--C-CeEEEEEeCCC--CCcceeEecccCCCC
Q 018474          168 PYGQLRKYDPKLKET--TVLHEGFYF---ANGIALSKNEDFVVVCESW--K-FRCRRYWLKGD--RAGILDAFIENLPGG  237 (355)
Q Consensus       168 ~~g~l~~~dp~~~~~--~~~~~~~~~---pngi~~~~dg~~l~v~~~~--~-~~i~~~~~~~~--~~~~~~~~~~~~~g~  237 (355)
                      ....++++...+...  ..+......   -.++..++|++++++....  . +.++.++.+..  .....+.+.....+.
T Consensus       200 ~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~  279 (414)
T PF02897_consen  200 YPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGV  279 (414)
T ss_dssp             CCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-
T ss_pred             CCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCce
Confidence            123577776554432  233333222   3367889999988875543  2 45777776543  122344443222221


Q ss_pred             cCceEECCCCCEEEEeec
Q 018474          238 PDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       238 p~~i~~d~~G~lwv~~~~  255 (355)
                      -. .+....+.+|+-++.
T Consensus       280 ~~-~v~~~~~~~yi~Tn~  296 (414)
T PF02897_consen  280 EY-YVDHHGDRLYILTND  296 (414)
T ss_dssp             EE-EEEEETTEEEEEE-T
T ss_pred             EE-EEEccCCEEEEeeCC
Confidence            11 111224468887765

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=81.84  E-value=6.4  Score=23.39  Aligned_cols=31  Identities=23%  Similarity=0.265  Sum_probs=24.2

Q ss_pred             CCCCCceEEEeeCCCeEEEEe-cCCEEEEEEc
Q 018474           50 CVNHPEDVSVVVSKGALYTAT-RDGWVKYFIL   80 (355)
Q Consensus        50 ~~~~p~~i~~d~~~g~l~~~~-~~g~i~~~~~   80 (355)
                      .+..|.++++|+.++.+|.+. ..+.|.+.+.
T Consensus         7 ~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~   38 (43)
T smart00135        7 GLGHPNGLAVDWIEGRLYWTDWGLDVIEVANL   38 (43)
T ss_pred             CCCCcCEEEEeecCCEEEEEeCCCCEEEEEeC
Confidence            478999999998888887654 4577777766

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=81.82  E-value=22  Score=33.21  Aligned_cols=91  Identities=11%  Similarity=0.132  Sum_probs=55.4

Q ss_pred             CcccCeEECCCCCEEEEeCCCcEEEEc-CC--------------C----e-EEEcCCcCCcccEEEccCCcEEEEeCCCC
Q 018474           94 QSLLGLTTTKDGGVILCDNEKGLLKVT-EE--------------G----V-EAIVPDASFTNDVIAASDGTLYFTVASTK  153 (355)
Q Consensus        94 ~p~~gl~~d~~g~L~v~~~~~gl~~~~-~~--------------g----~-~~~~~~~~~~~~l~~d~dG~ly~~d~~~~  153 (355)
                      ..+ ++.++++|+|......+|.+.+. +.              .    + +.+......+.+++..+|+++.++.+.  
T Consensus        67 aVN-~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~--  143 (434)
T KOG1009|consen   67 AVN-VVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSV--  143 (434)
T ss_pred             eeE-EEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeec--
Confidence            366 88999999988766555533332 11              0    0 011111156777888888766665433  


Q ss_pred             CCCccccccccccCCCCeEEEEeCCCCeEEEeec-cccccccEEEeCCCC
Q 018474          154 YTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE-GFYFANGIALSKNED  202 (355)
Q Consensus       154 ~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~-~~~~pngi~~~~dg~  202 (355)
                                     ...++.||...|++..... .-..++|++++|-++
T Consensus       144 ---------------dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~q  178 (434)
T KOG1009|consen  144 ---------------DNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQ  178 (434)
T ss_pred             ---------------cceEEEEEeccceeEeeccccccccceeecchhhh
Confidence                           3467778877777655443 345688888888664

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=81.61  E-value=45  Score=30.98  Aligned_cols=57  Identities=21%  Similarity=0.232  Sum_probs=34.0

Q ss_pred             ceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeCCEEEEeecC----CCeEEEeeCC-CCCC
Q 018474          292 GARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQ----SNFIGILPLD-GPEP  350 (355)
Q Consensus       292 ~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~----~~~i~~~~~~-~~~~  350 (355)
                      ...|+.++. +|.....++..+-.+ ..+..+-+.++.||+....    ...|.+++++ +..+
T Consensus       259 ~~hly~~~~-~~~~~~~lT~G~~~V-~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~  320 (353)
T PF00930_consen  259 YRHLYLYDL-DGGKPRQLTSGDWEV-TSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEP  320 (353)
T ss_dssp             SEEEEEEET-TSSEEEESS-SSS-E-EEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEE
T ss_pred             CcEEEEEcc-cccceeccccCceee-cccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCe
Confidence            467999999 777766665533221 1122222345889987665    4478888887 4443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=81.39  E-value=43  Score=30.59  Aligned_cols=110  Identities=14%  Similarity=0.072  Sum_probs=58.1

Q ss_pred             CCeEEE-Eec-----CCEEEEEEcCCCeeE-EeeccCCCc-----ccCeEECCCCCEEEEeCC------CcEEEEcC-CC
Q 018474           63 KGALYT-ATR-----DGWVKYFILHNETLV-NWKHIDSQS-----LLGLTTTKDGGVILCDNE------KGLLKVTE-EG  123 (355)
Q Consensus        63 ~g~l~~-~~~-----~g~i~~~~~~~g~~~-~~~~~~~~p-----~~gl~~d~~g~L~v~~~~------~gl~~~~~-~g  123 (355)
                      ++.||+ +..     ...++++|+.+.++. .+......|     . +.+. -+++|||....      ..++++|. +.
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~-~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~  149 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENG-SACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQ  149 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCc-eEEE-ECCEEEEEeCcCCCccCceEEEEcCCCC
Confidence            456665 322     136788888777652 222211111     1 2222 36789986432      24788884 44


Q ss_pred             -eEEEcCCc--CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeec
Q 018474          124 -VEAIVPDA--SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE  187 (355)
Q Consensus       124 -~~~~~~~~--~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~  187 (355)
                       -+.+..-.  ......++.-++.||+-.....             .....+++|||++.+++.+..
T Consensus       150 ~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~-------------~~~~~~~~yd~~~~~W~~~~~  203 (323)
T TIGR03548       150 EWFELPDFPGEPRVQPVCVKLQNELYVFGGGSN-------------IAYTDGYKYSPKKNQWQKVAD  203 (323)
T ss_pred             CeeECCCCCCCCCCcceEEEECCEEEEEcCCCC-------------ccccceEEEecCCCeeEECCC
Confidence             44443211  1223334445788998643210             001246899999999987653

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=81.29  E-value=56  Score=31.90  Aligned_cols=141  Identities=14%  Similarity=0.173  Sum_probs=67.9

Q ss_pred             CCEEEEEEcCCCeeEEeeccCC-CcccCeEECCCCCEEEEeCCCcEEEEcCCC--eEEEc--CCc-CCcccEEEccCCcE
Q 018474           72 DGWVKYFILHNETLVNWKHIDS-QSLLGLTTTKDGGVILCDNEKGLLKVTEEG--VEAIV--PDA-SFTNDVIAASDGTL  145 (355)
Q Consensus        72 ~g~i~~~~~~~g~~~~~~~~~~-~p~~gl~~d~~g~L~v~~~~~gl~~~~~~g--~~~~~--~~~-~~~~~l~~d~dG~l  145 (355)
                      .+..+.+|. +|.++.+..... ... .+..-++|+|++... ..+..+|..|  +....  ... .+=+++...++|++
T Consensus       127 ~~~~~~iD~-~G~Vrw~~~~~~~~~~-~~~~l~nG~ll~~~~-~~~~e~D~~G~v~~~~~l~~~~~~~HHD~~~l~nGn~  203 (477)
T PF05935_consen  127 SSYTYLIDN-NGDVRWYLPLDSGSDN-SFKQLPNGNLLIGSG-NRLYEIDLLGKVIWEYDLPGGYYDFHHDIDELPNGNL  203 (477)
T ss_dssp             EEEEEEEET-TS-EEEEE-GGGT--S-SEEE-TTS-EEEEEB-TEEEEE-TT--EEEEEE--TTEE-B-S-EEE-TTS-E
T ss_pred             CceEEEECC-CccEEEEEccCccccc-eeeEcCCCCEEEecC-CceEEEcCCCCEEEeeecCCcccccccccEECCCCCE
Confidence            456777887 777654433222 122 255668999998875 5788888767  33322  211 34577899999976


Q ss_pred             EEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee---cc-------------------------ccccccEEE
Q 018474          146 YFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH---EG-------------------------FYFANGIAL  197 (355)
Q Consensus       146 y~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~---~~-------------------------~~~pngi~~  197 (355)
                      .+.............    .......+..+| .+|++....   +-                         -...|.+..
T Consensus       204 L~l~~~~~~~~~~~~----~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~y  278 (477)
T PF05935_consen  204 LILASETKYVDEDKD----VDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDY  278 (477)
T ss_dssp             EEEEEETTEE-TS-E----E---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEE
T ss_pred             EEEEeecccccCCCC----ccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEE
Confidence            654331000000000    001123466666 345543321   00                         023478888


Q ss_pred             eCCCCEEEEEeCCCCeEEEEEeC
Q 018474          198 SKNEDFVVVCESWKFRCRRYWLK  220 (355)
Q Consensus       198 ~~dg~~l~v~~~~~~~i~~~~~~  220 (355)
                      ++..+.++++....+.|+.++.+
T Consensus       279 d~~dd~iivSsR~~s~V~~Id~~  301 (477)
T PF05935_consen  279 DPSDDSIIVSSRHQSAVIKIDYR  301 (477)
T ss_dssp             ETTTTEEEEEETTT-EEEEEE-T
T ss_pred             eCCCCeEEEEcCcceEEEEEECC
Confidence            88666799998877899999953

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=81.26  E-value=42  Score=30.45  Aligned_cols=72  Identities=26%  Similarity=0.211  Sum_probs=50.8

Q ss_pred             CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEE-EeCCCCe-EEEeeccccc--cccEEEeCCCCEEEEE
Q 018474          132 SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRK-YDPKLKE-TTVLHEGFYF--ANGIALSKNEDFVVVC  207 (355)
Q Consensus       132 ~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~-~dp~~~~-~~~~~~~~~~--pngi~~~~dg~~l~v~  207 (355)
                      ..+..++...+|++..|-+.                 .|.+.| ||..+|+ +..+..+...  -..|+++||..+|-+ 
T Consensus       182 s~Iacv~Ln~~Gt~vATaSt-----------------kGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~Lav-  243 (346)
T KOG2111|consen  182 SDIACVALNLQGTLVATAST-----------------KGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAV-  243 (346)
T ss_pred             CceeEEEEcCCccEEEEecc-----------------CcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEE-
Confidence            56777888889998877554                 566665 6877664 4455555433  356899999985555 


Q ss_pred             eCCCCeEEEEEeCC
Q 018474          208 ESWKFRCRRYWLKG  221 (355)
Q Consensus       208 ~~~~~~i~~~~~~~  221 (355)
                      .+.++.|+.|.+.+
T Consensus       244 sSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  244 SSDKGTLHIFSLRD  257 (346)
T ss_pred             EcCCCeEEEEEeec
Confidence            45788999999865

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=81.24  E-value=34  Score=29.32  Aligned_cols=100  Identities=13%  Similarity=0.078  Sum_probs=52.0

Q ss_pred             CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee---ccccccccEEEeCCCCEEEEEe
Q 018474          132 SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH---EGFYFANGIALSKNEDFVVVCE  208 (355)
Q Consensus       132 ~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~---~~~~~pngi~~~~dg~~l~v~~  208 (355)
                      .+..++..+. |.++.+....               ....+.++|..+++...-.   ..-.+..|++-.  |+.+|.-.
T Consensus        46 sfTQGL~~~~-g~i~esTG~y---------------g~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~--gd~~y~LT  107 (262)
T COG3823          46 SFTQGLEYLD-GHILESTGLY---------------GFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL--GDYFYQLT  107 (262)
T ss_pred             hhhcceeeeC-CEEEEecccc---------------ccceeEEEeccCceEEEEeecCCccccccceeec--cceEEEEE
Confidence            4566666553 3677665431               1236888888777654321   123345566654  44577766


Q ss_pred             CCCCeEEEEEeCCCC-CcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474          209 SWKFRCRRYWLKGDR-AGILDAFIENLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       209 ~~~~~i~~~~~~~~~-~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      ...+--+.||.+.-+ ++.+     ..+|-.=|++.|.+ ++|.++..
T Consensus       108 w~egvaf~~d~~t~~~lg~~-----~y~GeGWgLt~d~~-~LimsdGs  149 (262)
T COG3823         108 WKEGVAFKYDADTLEELGRF-----SYEGEGWGLTSDDK-NLIMSDGS  149 (262)
T ss_pred             eccceeEEEChHHhhhhccc-----ccCCcceeeecCCc-ceEeeCCc
Confidence            555555566653311 1221     12232234665543 58888754

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.21  E-value=14  Score=38.97  Aligned_cols=132  Identities=14%  Similarity=0.136  Sum_probs=65.9

Q ss_pred             CeEEEEecCCEEEEEEcCC---C-eeE---EeeccCCCcccCeEECCCCC-EEEEeCCC-cEEEEcCCC-eEEEcC-CcC
Q 018474           64 GALYTATRDGWVKYFILHN---E-TLV---NWKHIDSQSLLGLTTTKDGG-VILCDNEK-GLLKVTEEG-VEAIVP-DAS  132 (355)
Q Consensus        64 g~l~~~~~~g~i~~~~~~~---g-~~~---~~~~~~~~p~~gl~~d~~g~-L~v~~~~~-gl~~~~~~g-~~~~~~-~~~  132 (355)
                      |.+--|.+||.|..|++..   + +..   +.....+... |+.+.+.+. +.....+. .|+..|-.. -+.+.. ...
T Consensus        81 GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~-gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~  159 (1049)
T KOG0307|consen   81 GLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVL-GLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQA  159 (1049)
T ss_pred             ceeeccccCCceEEecchhhccCcchHHHhhhcccCCcee-eeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCC
Confidence            3455567899999999843   2 211   1122335677 888887765 44433333 477777322 111111 112


Q ss_pred             CcccE---EEccCCcEEEEeCCCCCCCccccccc-cccCCCCeEEEEeCCCCe-EEEeeccc--cccccEEEeCCCCEEE
Q 018474          133 FTNDV---IAASDGTLYFTVASTKYTPTDFYKDM-AEGKPYGQLRKYDPKLKE-TTVLHEGF--YFANGIALSKNEDFVV  205 (355)
Q Consensus       133 ~~~~l---~~d~dG~ly~~d~~~~~~~~~~~~~~-~~~~~~g~l~~~dp~~~~-~~~~~~~~--~~pngi~~~~dg~~l~  205 (355)
                      .+.++   ....                 ...++ -.+..+|+...||.+.++ +..+....  ..-++++++||+..-+
T Consensus       160 ~~~eI~~lsWNr-----------------kvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql  222 (1049)
T KOG0307|consen  160 PPSEIKCLSWNR-----------------KVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQL  222 (1049)
T ss_pred             CcccceEeccch-----------------hhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceee
Confidence            22222   2111                 11111 123446678888876442 11222111  1234789999998666


Q ss_pred             EEeCCCCe
Q 018474          206 VCESWKFR  213 (355)
Q Consensus       206 v~~~~~~~  213 (355)
                      +..+...+
T Consensus       223 ~~As~dd~  230 (1049)
T KOG0307|consen  223 LVASGDDS  230 (1049)
T ss_pred             eeecCCCC
Confidence            65555554

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=80.72  E-value=11  Score=36.73  Aligned_cols=72  Identities=13%  Similarity=0.087  Sum_probs=53.2

Q ss_pred             EecCCCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCCc-EEEEc
Q 018474           45 KLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKG-LLKVT  120 (355)
Q Consensus        45 ~~~~~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~g-l~~~~  120 (355)
                      .++..  ..+.+.+..+.+..+.+|+.||.|..+|...+. ..+....-.|. -+++.++|.+++....+| +-.+|
T Consensus       255 sipL~--s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~-t~~~ka~~~P~-~iaWHp~gai~~V~s~qGelQ~FD  327 (545)
T PF11768_consen  255 SIPLP--SQVICCARSPSEDKLVLGCEDGSIILYDTTRGV-TLLAKAEFIPT-LIAWHPDGAIFVVGSEQGELQCFD  327 (545)
T ss_pred             EEecC--CcceEEecCcccceEEEEecCCeEEEEEcCCCe-eeeeeecccce-EEEEcCCCcEEEEEcCCceEEEEE
Confidence            45543  578888899888999999999999999985553 33344445687 899999998776655544 66666

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	355
2fp8_A	322	Structure Of Strictosidine Synthase, The Biosynthet		1e-11
2v91_A	302	Structure Of Strictosidine Synthase In Complex With		2e-11
2fpb_A	322	Structure Of Strictosidine Synthase, The Biosynthet		3e-11
2dso_A	333	Crystal Structure Of D138n Mutant Of Drp35, A 35kda		3e-04

>pdb|2FP8|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic Entry To The Monoterpenoid Indole Alkaloid Family Length = 322

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 56/109 (51%), Gaps = 2/109 (1%)
Query: 143 GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNED 202
           G +YFT  ST Y      + M      G+L KYDP  KETT+L +  +   G  +S +  
Sbjct: 138 GIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSS 197
Query: 203 FVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWI 251
           FV+V E    +  +YWL+G + G  +  ++ +P  P NI    DG FW+
Sbjct: 198 FVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IP-NPGNIKRNADGHFWV 244

>pdb|2V91|A Chain A, Structure Of Strictosidine Synthase In Complex With Strictosidine Length = 302

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 56/109 (51%), Gaps = 2/109 (1%)
Query: 143 GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNED 202
           G +YFT  ST Y      + M      G+L KYDP  KETT+L +  +   G  +S +  
Sbjct: 129 GIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSS 188
Query: 203 FVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWI 251
           FV+V E    +  +YWL+G + G  +  ++ +P  P NI    DG FW+
Sbjct: 189 FVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IP-NPGNIKRNADGHFWV 235

>pdb|2FPB|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic Entry To The Monoterpenoid Indole Alkaloid Family Length = 322

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 55/109 (50%), Gaps = 2/109 (1%)
Query: 143 GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNED 202
           G +YFT  ST Y      +        G+L KYDP  KETT+L +  +   G  +S +  
Sbjct: 138 GIVYFTDVSTLYDDRGVQQIXDTSDKTGRLXKYDPSTKETTLLXKELHVPGGAEVSADSS 197
Query: 203 FVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWI 251
           FV+V E    +  +YWL+G + G  +  ++ +P  P NI    DG FW+
Sbjct: 198 FVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IP-NPGNIKRNADGHFWV 244

>pdb|2DSO|A Chain A, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug Responsive Protein From Staphylococcus Aureus Length = 333

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 69/167 (41%), Gaps = 28/167 (16%)
Query: 103 KDGGVILC-----DNEKGLLKVTEEG--VEAIVPDASFT---NDVIAASDGTLYFTVAST 152
           KDG + +C      +  G+   TE G  ++ I+ D S     ND++  S G  YFT    
Sbjct: 96  KDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCINDMVFDSKGGFYFT---- 151
Query: 153 KYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKF 212
                DF        P G +    P  +  T + +    ANGIALS +E  + V E+   
Sbjct: 152 -----DFRG--YSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTAN 204
Query: 213 RCRRYWLKGDRAGILDAFIENLP------GGPDNINLAPDGSFWIGL 253
           R  R  L+ D   I   F   +P       GPD+  +  D + ++ +
Sbjct: 205 RLHRIALEDDGVTI-QPFGATIPYYFTGHEGPDSCCIDSDDNLYVAM 250

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	355
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	2e-64
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	2e-31
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	7e-20
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	4e-15
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	2e-12
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	7e-12
2p4o_A	306	Hypothetical protein; putative lactonase, structur	5e-09
2p4o_A	306	Hypothetical protein; putative lactonase, structur	1e-07
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	7e-05
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	6e-04
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* Length = 322

 Score =  206 bits (526), Expect = 2e-64
 Identities = 74/349 (21%), Positives = 116/349 (33%), Gaps = 57/349 (16%)

Query: 34  SKESSSMKGLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDS 93
           S   SS      L E     P   +   +    YT+ +DG V  +   N   V++ +   
Sbjct: 1   SLALSSPILKEILIEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASP 60

Query: 94  QSL-------------------LGLT-TTKDGGVILCDNEKGLLKVTEEG--VEAIVPDA 131
                                   ++   ++  + + D    L  V  EG     +    
Sbjct: 61  YWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSV 120

Query: 132 -----SFTNDV-IAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL 185
                 +   V +    G +YFT  ST Y      + M      G+L KYDP  KETT+L
Sbjct: 121 DGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLL 180

Query: 186 HEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAP 245
            +  +   G  +S +  FV+V E    +  +YWL+G + G  +  +  +P  P NI    
Sbjct: 181 LKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLV-KIP-NPGNIKRNA 238

Query: 246 DGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKI 305
           DG FW+   +                           L   M      + +K D   G I
Sbjct: 239 DGHFWVSSSEE--------------------------LDGNMHGRVDPKGIKFDE-FGNI 271

Query: 306 IRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLDGPEPQLAT 354
           +     P            E DG LY+ +L    +GIL  D       +
Sbjct: 272 LEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYDKKGNSFVS 320

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* Length = 355

 Score =  120 bits (301), Expect = 2e-31
 Identities = 61/374 (16%), Positives = 115/374 (30%), Gaps = 61/374 (16%)

Query: 4   KSFLLACLLAFTVQIFFSLSVSSLASLLSISKESSSMKGLTKLGEGCVNHPEDVSVVVSK 63
                  LL   + +F     S         + +        L +G  N  ED+  ++  
Sbjct: 2   AKLTALTLLGMGLALFDRQKSSFQTRFNVHREVTPVELPNCNLVKGIDNGSEDL-EILPN 60

Query: 64  GALYTATRDGWVKYFILHNET-----LVNWKHIDSQSL------------------LGLT 100
           G  + ++   +        +      L++    +                      +   
Sbjct: 61  GLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTF 120

Query: 101 TTKDGGVIL-------CDNEKGLLKVTEEGVEAI------VPDASFTNDVIAASDGTLYF 147
              D  V L         +   + K  EE    +             ND++A      Y 
Sbjct: 121 IDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYA 180

Query: 148 TVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVC 207
           T       P     +M  G  +  +  Y P   +  V+ EGF FANGI +S +  +V + 
Sbjct: 181 TNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVRVVAEGFDFANGINISPDGKYVYIA 238

Query: 208 ESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAP-DGSFWIGLIKMNQTGVRAIQK 266
           E    +   Y    +        + +     DNI++ P  G  W+G    +  G+R    
Sbjct: 239 ELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVG---CHPNGMRIFFY 294

Query: 267 CREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF 326
             E                P GS+   R+  +   + K+   + + + T +   T AA +
Sbjct: 295 DAEN---------------PPGSEVL-RIQDILSEEPKVTVVYAE-NGTVLQGSTVAAVY 337

Query: 327 DGNLYLASLQSNFI 340
            G L + ++    +
Sbjct: 338 KGKLLIGTVFHKAL 351

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... Length = 314

 Score = 87.9 bits (218), Expect = 7e-20
 Identities = 37/230 (16%), Positives = 65/230 (28%), Gaps = 23/230 (10%)

Query: 44  TKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSL----LGL 99
               EG V        +V+          G +    L           +         G 
Sbjct: 17  IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGC 76

Query: 100 TTTKDGGVILC-DNEKGLLKVTEEGVEAIVPDASF-------TNDVIAASDGTLYFTVAS 151
              +D   +   D   GLL V  +G    +             ND     +G L+ T  +
Sbjct: 77  QCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWIT--A 134

Query: 152 TKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNED----FVVVC 207
                       +  + +G +  +    +   V    F F NGIA+    D     ++V 
Sbjct: 135 PAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVA 193

Query: 208 ESWKFRCRRYWLKGDRA----GILDAFIENLPGGPDNINLAPDGSFWIGL 253
           E+   +   Y +KG        +         GG D ++   D +  +  
Sbjct: 194 ETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVAN 243

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A Length = 333

 Score = 74.4 bits (183), Expect = 4e-15
 Identities = 38/172 (22%), Positives = 62/172 (36%), Gaps = 28/172 (16%)

Query: 98  GLTTTKDGGVILCDN-----EKGLLKVTEEG------VEAIVPDASFTNDVIAASDGTLY 146
            +   KDG + +C         G+   TE G      +E +       +D++  S G  Y
Sbjct: 91  AIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCI-DDMVFDSKGGFY 149

Query: 147 FTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVV 206
           FT                   P G +    P  +  T + +    ANGIALS +E  + V
Sbjct: 150 FT------DF-----RGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWV 198

Query: 207 CESWKFRCRRYWLKGD-----RAGILDAFIENLPGGPDNINLAPDGSFWIGL 253
            E+   R  R  L+ D       G    +      GPD+  +  D + ++ +
Sbjct: 199 TETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAM 250

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} Length = 305

 Score = 66.3 bits (162), Expect = 2e-12
 Identities = 35/224 (15%), Positives = 64/224 (28%), Gaps = 29/224 (12%)

Query: 45  KLGEGCVNHPEDVSVVVS---KGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTT 101
              EG        ++V S      +     DG V   +             +    G   
Sbjct: 45  TWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGTVDVLLD-----------ATAFTNGNAV 93

Query: 102 TKDGGVILCDNEKGLLKVTEE--GVEAIV------PDASFTNDVIAASDGTLYFTVASTK 153
                ++ C++ +  +  ++       +V         S  ND+I A DG ++FT     
Sbjct: 94  DAQQRLVHCEHGRRAITRSDADGQAHLLVGRYAGKRLNSP-NDLIVARDGAIWFTDPPFG 152

Query: 154 YTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFR 213
                          +  + +  P       +       NG+A S +E  + V ++ +  
Sbjct: 153 LRKPSQGCPADPELAHHSVYRLPPDGSPLQRM-ADLDHPNGLAFSPDEQTLYVSQTPEQG 211

Query: 214 CRRYWLK--GDRAGILDA---FIENLPGGPDNINLAPDGSFWIG 252
                +     R G L     F     G PD   +   G  W  
Sbjct: 212 HGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSS 255

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Length = 296

 Score = 64.3 bits (157), Expect = 7e-12
 Identities = 41/223 (18%), Positives = 69/223 (30%), Gaps = 29/223 (13%)

Query: 45  KLGEGCVNHPEDVSVVVS---KGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTT 101
              EG V  P   +V+ S   +   +  + DG +    +H     N          G   
Sbjct: 28  TWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQLSPE-MHPSHHQN----------GHCL 76

Query: 102 TKDGGVILCDNEKGLLKVTEEGVEAIVPDASFT--------NDVIAASDGTLYFTVASTK 153
            K G +I C +    L+   E        A           NDV  A DG+L+F+  +  
Sbjct: 77  NKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYG 136

Query: 154 YTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFR 213
               +         P   + +  P    +  +       NG+A   + + +V  ++    
Sbjct: 137 IDKPEEGYGGEMELPGRWVFRLAPDGTLSAPI-RDRVKPNGLAFLPSGNLLVS-DTGDNA 194

Query: 214 CRRYWLKGDRAGILDA---FIENLPGGPDNINLAPDGSFWIGL 253
             RY L     G  +         PG  D + +   G  W   
Sbjct: 195 THRYCLNAR--GETEYQGVHFTVEPGKTDGLRVDAGGLIWASA 235

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Length = 306

 Score = 55.7 bits (134), Expect = 5e-09
 Identities = 32/169 (18%), Positives = 58/169 (34%), Gaps = 18/169 (10%)

Query: 98  GLTTTKDGGVILCDNEKG----LLKVTEEG---VEAIVPDASFTNDVIAASDGTLYFTVA 150
           GL  T +G ++           +  V  +G       +PDA F N +   SD       +
Sbjct: 76  GLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADS 135

Query: 151 STKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESW 210
              Y    +  D+ +    G +    P L  +      F  ANG+   +  +F+ V  + 
Sbjct: 136 ---YRGAIWLIDVVQPS--GSIWLEHPMLARSNSES-VFPAANGL--KRFGNFLYVSNTE 187

Query: 211 KFRCRRYWLKGD-RAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQ 258
           K    R  +    + G  + F+E      D+     +G+ +      N 
Sbjct: 188 KMLLLRIPVDSTDKPGEPEIFVE--QTNIDDFAFDVEGNLYGATHIYNS 234

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Length = 306

 Score = 51.5 bits (123), Expect = 1e-07
 Identities = 32/242 (13%), Positives = 62/242 (25%), Gaps = 35/242 (14%)

Query: 129 PDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG 188
           P  +F  ++ +A DGT++ T             +       G++    P      +    
Sbjct: 29  PVNTFLENLASAPDGTIFVT-------------NH----EVGEIVSITPD-GNQQIHATV 70

Query: 189 FYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDN-INLAPDG 247
               +G+A + N D V     W              G ++  +        N I    D 
Sbjct: 71  EGKVSGLAFTSNGDLVAT--GWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDT 128

Query: 248 SFWIGLIKMNQTGVRAIQKCREKWELLD----AYPGLISLLLPMG-SDAGARVVKVDGND 302
            +           +  + +      L                  G    G  +   +   
Sbjct: 129 QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEK 188

Query: 303 GKIIRDFNDPDATYISFVTSAAEF---------DGNLYLASLQSNFIGILPLDGPEPQLA 353
             ++R   D             +          +GNLY A+   N +  +  D     +A
Sbjct: 189 MLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIA 248

Query: 354 TI 355
             
Sbjct: 249 QA 250

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 43.1 bits (102), Expect = 7e-05
 Identities = 38/272 (13%), Positives = 70/272 (25%), Gaps = 57/272 (20%)

Query: 98  GLTTTKDGGVILCDNEKG-LLKVTEEGVEAIVP---DASFTNDVIAASDGTLYFTVASTK 153
           G+T +  G V +  ++   +  +  +G     P     +    +  +SDG ++F      
Sbjct: 19  GITVSDKGKVWITQHKANMISCINLDGKITEYPLPTPDAKVMCLTISSDGEVWF------ 72

Query: 154 YTPTDFYKDMAEGKPYGQLRKYDPKLKETTV-LHEGFYFANGIALSKNEDFVVVCESWKF 212
              T+            ++ +   K       L        GI    N   +   E    
Sbjct: 73  ---TENA--------ANKIGRITKKGIIKEYTLPNPDSAPYGITEGPN-GDIWFTEMNGN 120

Query: 213 RCRRYWLKGDRAGILDAFIENLPGG-PDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKW 271
           R  R        G +  +     G  P  I L  D + W            AI +     
Sbjct: 121 RIGRI----TDDGKIREYELPNKGSYPSFITLGSDNALWFTE-----NQNNAIGR----- 166

Query: 272 ELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFN-------DPDATYISFVTSAA 324
             +    G I+        +G   +    +D     +                 F     
Sbjct: 167 --ITES-GDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITTSGEITEFKIPTP 223

Query: 325 EF---------DGNLYLASLQSNFIGILPLDG 347
                        +L+     +N IG L  + 
Sbjct: 224 NARPHAITAGAGIDLWFTEWGANKIGRLTSNN 255

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 33/216 (15%), Positives = 61/216 (28%), Gaps = 65/216 (30%)

Query: 135 NDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV-LHEGFYFAN 193
             +  +  G ++ T                       +   +   K T   L        
Sbjct: 18  YGITVSDKGKVWITQHKA-----------------NMISCINLDGKITEYPLPTPDAKVM 60

Query: 194 GIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAF-IENLPGGPDNINLAPDGSFWIG 252
            + +S +   V   E+   +  R      + GI+  + + N    P  I   P+G  W  
Sbjct: 61  CLTISSD-GEVWFTENAANKIGRI----TKKGIIKEYTLPNPDSAPYGITEGPNGDIWF- 114

Query: 253 LIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGA-RVVKVDGNDGKIIRDFND 311
                                               ++    R+ ++  +DGKI      
Sbjct: 115 ------------------------------------TEMNGNRIGRIT-DDGKIREYELP 137

Query: 312 PDATYISFVTSAAEFDGNLYLASLQSNFIGILPLDG 347
              +Y SF+T  +  D  L+    Q+N IG +   G
Sbjct: 138 NKGSYPSFITLGS--DNALWFTENQNNAIGRITESG 171

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 38/257 (14%), Positives = 68/257 (26%), Gaps = 63/257 (24%)

Query: 135 NDVIAASDGTLYFTVAST----KYTP----TDFYKDMAEGKPYG---------------- 170
             + ++ DG ++FT                 +F     + K                   
Sbjct: 23  YGITSSEDGKVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGA 82

Query: 171 -QLRKYDPKLKETTV-LHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILD 228
            ++ K   K   T   L +      GI    N   +   +    R  +        G + 
Sbjct: 83  NKIGKLSKKGGFTEYPLPQPDSGPYGITEGLN-GDIWFTQLNGDRIGKL----TADGTIY 137

Query: 229 AFIENLPGG-PDNINLAPDGSFWI------GLIKMNQTGVRAIQKCREKWELLDAYPGLI 281
            +     G  P  I L  D + W        + ++  TG             L+ YP   
Sbjct: 138 EYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITNTGK------------LEEYPLPT 185

Query: 282 SLLLPMG--SDAGARVVKVDGNDGKIIRDFNDPDATYISFVTS---------AAEFDGNL 330
           +   P+G  S     +  V+    KI R           +             A  +  +
Sbjct: 186 NAAAPVGITSGNDGALWFVEIMGNKIGR--ITTTGEISEYDIPTPNARPHAITAGKNSEI 243

Query: 331 YLASLQSNFIGILPLDG 347
           +     +N IG +  D 
Sbjct: 244 WFTEWGANQIGRITNDN 260

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 4e-04
 Identities = 51/359 (14%), Positives = 98/359 (27%), Gaps = 125/359 (34%)

Query: 4   KSFLLAC-LLAFT--VQIFFSLSVSSLASLLSISKESSSMKGLTK----------LG--- 47
            +F L+C +L  T   Q+   LS ++  + +S+   S     LT           L    
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAAT-TTHISLDHHS---MTLTPDEVKSLLLKYLDCRP 315

Query: 48  -----EGCVNHPEDVSVVVSKGAL---YTATRDGWVKYFILHNETLVNWKHIDSQSLLGL 99
                E    +P  +S++           AT D W        + L     I   SL  L
Sbjct: 316 QDLPREVLTTNPRRLSII---AESIRDGLATWDNWKHVNC---DKL---TTIIESSLNVL 366

Query: 100 TTTK-----DGGVILCDNEK---GLLKV-----TEEGVEAIVPDASFTNDVIAASDGTLY 146
              +     D   +   +      LL +      +  V  +V         +        
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV--NKLHKYSLVEKQP--- 421

Query: 147 FTVASTKYTPTDFYKDM---AEGKP---------YGQLRKYDPKLKETTVLHEGFYFANG 194
                +  +    Y ++    E +          Y   + +D    +    +   YF + 
Sbjct: 422 ---KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS--DDLIPPYLDQYFYSH 476

Query: 195 IA--LSKNE-------------DFVVVCESW---KFRC---------------------R 215
           I   L   E             DF      +   K R                      +
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDF-----RFLEQKIRHDSTAWNASGSILNTLQQLKFYK 531

Query: 216 RYWLKGDRA--GILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGV------RAIQK 266
            Y    D     +++A ++ LP   +N+  +      + +  M +         + +Q+
Sbjct: 532 PYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL-LRIALMAEDEAIFEEAHKQVQR 589

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	355
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	100.0
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	99.97
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.96
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.94
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.93
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.92
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.9
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.9
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.89
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.89
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.88
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.88
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.88
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.86
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.86
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.86
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.86
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.84
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.83
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.82
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.81
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.8
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.79
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.79
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.79
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.78
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.77
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.77
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.77
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.76
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.76
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.75
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.75
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.75
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.75
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.74
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.74
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.73
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.72
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.71
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.71
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.7
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.69
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.69
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.69
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	99.69
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.68
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.68
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	99.67
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.66
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.66
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.66
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.65
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	99.65
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.64
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.64
3ott_A	758	Two-component system sensor histidine kinase; beta	99.64
3ott_A	758	Two-component system sensor histidine kinase; beta	99.64
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.62
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.62
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.62
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.61
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.59
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.59
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.57
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.56
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.55
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.55
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.55
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.54
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.52
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.51
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.5
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.49
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.48
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.48
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	99.47
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.46
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.46
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.46
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.46
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.45
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.43
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.42
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.42
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	99.41
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	99.41
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	99.4
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.37
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.36
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.35
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.35
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.34
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.33
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.31
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	99.31
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.3
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.28
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.27
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.27
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	99.25
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.25
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	99.21
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.18
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.18
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.17
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.17
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.16
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.16
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.16
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.15
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.12
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.12
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	99.11
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.11
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.1
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.1
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	99.08
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	99.07
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.07
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.06
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.05
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.04
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.0
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.99
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.98
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.98
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.97
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	98.95
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.95
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.95
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	98.94
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.93
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.92
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.91
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.91
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.91
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.9
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.89
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.88
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	98.88
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	98.87
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	98.87
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	98.86
3ow8_A	321	WD repeat-containing protein 61; structural genomi	98.86
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	98.86
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	98.86
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.86
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	98.85
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	98.83
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	98.82
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	98.82
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	98.82
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	98.82
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.81
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.81
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	98.81
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	98.8
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	98.8
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	98.79
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.78
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.78
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	98.77
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	98.75
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	98.75
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	98.75
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	98.73
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	98.72
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	98.71
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	98.7
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	98.7
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	98.69
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.68
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	98.68
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	98.67
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	98.67
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	98.66
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	98.66
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	98.65
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	98.64
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	98.64
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	98.62
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	98.62
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	98.61
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	98.61
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.61
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	98.59
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.59
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	98.59
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	98.58
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	98.58
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	98.58
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.57
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	98.57
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.56
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.56
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.56
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	98.56
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	98.56
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	98.56
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	98.55
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	98.55
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	98.54
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	98.53
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	98.52
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	98.5
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	98.5
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	98.5
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	98.49
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.48
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	98.48
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	98.47
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	98.47
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	98.47
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	98.46
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	98.46
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	98.46
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	98.45
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	98.45
3jrp_A	379	Fusion protein of protein transport protein SEC13	98.44
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.4
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	98.4
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	98.4
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	98.39
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	98.39
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	98.38
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	98.37
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.37
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.36
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	98.35
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	98.35
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.34
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	98.33
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	98.33
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	98.33
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	98.33
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	98.31
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	98.28
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	98.28
3jrp_A	379	Fusion protein of protein transport protein SEC13	98.28
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.27
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	98.26
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	98.26
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	98.25
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	98.24
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	98.23
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	98.2
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	98.2
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.19
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.19
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.18
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	98.17
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	98.17
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	98.16
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	98.16
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	98.15
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.14
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	98.14
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	98.12
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.11
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	98.1
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.09
3jro_A	753	Fusion protein of protein transport protein SEC13	98.09
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	98.09
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	98.08
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	98.05
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.03
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.01
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	98.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	97.97
2pm7_B	297	Protein transport protein SEC13, protein transport	97.97
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	97.97
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	97.95
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	97.94
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	97.91
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	97.89
2pm7_B	297	Protein transport protein SEC13, protein transport	97.88
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.86
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	97.85
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	97.84
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.83
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	97.82
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	97.78
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.75
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	97.74
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	97.74
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.72
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	97.72
3jro_A	753	Fusion protein of protein transport protein SEC13	97.71
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.69
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	97.67
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.67
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	97.66
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.65
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.62
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	97.59
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.46
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.45
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	97.42
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	97.42
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	97.33
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	97.3
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	97.23
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.23
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	97.22
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	97.18
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	97.18
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.17
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	97.09
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.08
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	97.07
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	97.04
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	96.92
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	96.8
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	96.58
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	96.53
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	96.39
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	96.37
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	96.33
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	96.25
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	96.08
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	95.72
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	95.56
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	95.35
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	95.31
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	95.28
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	95.26
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	95.14
2cn3_A	737	Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc	95.12
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	94.97
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	94.76
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	94.65
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	94.46
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	93.65
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	93.6
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	93.52
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	93.25
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	93.22
3a0f_A	763	Xyloglucanase; beta-propeller, hydrolase; 2.50A {G	92.52
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	92.42
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	92.11
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	91.52
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	90.94
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	90.53
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	89.12
2cn3_A	737	Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc	88.33
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	85.42

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=100.00  E-value=5.5e-32  Score=247.90  Aligned_cols=277  Identities=24%  Similarity=0.380  Sum_probs=214.0

Q ss_pred             ceEecC-CCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeecc--------------------CCCcccCeEE
Q 018474           43 LTKLGE-GCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI--------------------DSQSLLGLTT  101 (355)
Q Consensus        43 ~~~~~~-~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~--------------------~~~p~~gl~~  101 (355)
                      .+.+.. +.+..||++++++++..+|+++.+++|+++++.+++++.+...                    ...|. ||++
T Consensus         9 ~~~i~~~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~-gi~~   87 (322)
T 2fp8_A            9 LKEILIEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTY-DISY   87 (322)
T ss_dssp             -CEEEEECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEE-EEEE
T ss_pred             cceeecCCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCc-eEEE
Confidence            344433 5578999999995444499999999999999977777665421                    24688 9999


Q ss_pred             CC-CCCEEEEeCCCcEEEEcC-CC-eEEEcCC-----cCCcccEEEcc-CCcEEEEeCCCCCCCccccccccccCCCCeE
Q 018474          102 TK-DGGVILCDNEKGLLKVTE-EG-VEAIVPD-----ASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQL  172 (355)
Q Consensus       102 d~-~g~L~v~~~~~gl~~~~~-~g-~~~~~~~-----~~~~~~l~~d~-dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l  172 (355)
                      |+ +|+|||++..+++++++. ++ ++.+...     ...|+++++|+ +|+||+++....+........+.+....+++
T Consensus        88 ~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v  167 (322)
T 2fp8_A           88 NLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRL  167 (322)
T ss_dssp             ETTTTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEE
T ss_pred             cCCCCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceE
Confidence            96 899999998888999996 45 6655432     26799999999 9999999976444333333334445556889


Q ss_pred             EEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEE
Q 018474          173 RKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIG  252 (355)
Q Consensus       173 ~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~  252 (355)
                      ++||+++++.+.+...+..||||++++||+.+|++++..++|++|++++...+..+.+.+ .++ |+|+++|++|++||+
T Consensus       168 ~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~~g-P~gi~~d~~G~l~va  245 (322)
T 2fp8_A          168 IKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHFWVS  245 (322)
T ss_dssp             EEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-CSS-EEEEEECTTSCEEEE
T ss_pred             EEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-CCC-CCCeEECCCCCEEEE
Confidence            999999898887777788999999999999999999988999999998755555665653 667 999999999999999


Q ss_pred             eecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeCCEEEE
Q 018474          253 LIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYL  332 (355)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~v  332 (355)
                      +...++..                 |.         ....+.|.+||+ +|+.+..+..++|..+..++.++..+++|||
T Consensus       246 ~~~~~~~~-----------------~~---------~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v  298 (322)
T 2fp8_A          246 SSEELDGN-----------------MH---------GRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQEHDGLLYI  298 (322)
T ss_dssp             EEEETTSS-----------------TT---------SCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEEETTEEEE
T ss_pred             ecCccccc-----------------cc---------CCCccEEEEECC-CCCEEEEEECCCCCccccceEEEEeCCEEEE
Confidence            97633211                 00         012367999999 9999999999888666778888888999999


Q ss_pred             eecCCCeEEEeeCCCCC
Q 018474          333 ASLQSNFIGILPLDGPE  349 (355)
Q Consensus       333 ~~~~~~~i~~~~~~~~~  349 (355)
                      ++..+++|.++++....
T Consensus       299 ~~~~~~~i~~~~~~~~~  315 (322)
T 2fp8_A          299 GTLFHGSVGILVYDKKG  315 (322)
T ss_dssp             ECSSCSEEEEEEC----
T ss_pred             eecCCCceEEEeccccc
Confidence            99999999999987543

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=99.97  E-value=1.6e-28  Score=225.82  Aligned_cols=273  Identities=20%  Similarity=0.315  Sum_probs=196.8

Q ss_pred             cCceEecCCCCCCCceEEEeeCCCeEEEEe-------------cCCEEEEEEcCC--CeeEEeeccC-------CCcccC
Q 018474           41 KGLTKLGEGCVNHPEDVSVVVSKGALYTAT-------------RDGWVKYFILHN--ETLVNWKHID-------SQSLLG   98 (355)
Q Consensus        41 ~~~~~~~~~~~~~p~~i~~d~~~g~l~~~~-------------~~g~i~~~~~~~--g~~~~~~~~~-------~~p~~g   98 (355)
                      ..++.+. +...+||+|+++ .+|.+|+++             .+|+|+++|+++  ++.+++...+       .+|+ |
T Consensus        40 ~~C~~i~-~~~~G~EDi~~~-~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~Ph-G  116 (355)
T 3sre_A           40 PNCNLVK-GIDNGSEDLEIL-PNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPH-G  116 (355)
T ss_dssp             SCEEECT-TCCSCCCEEEEC-TTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEE-E
T ss_pred             CCCEEeC-CCCCCcceeEEc-CCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeee-e
Confidence            3566664 324799999999 589999997             689999999863  4555443322       4799 9


Q ss_pred             eEECC--CC--CEEEEeCCC-----cEEEEcCCC--eEEE---cC-CcCCcccEEEccCCcEEEEeCCCCCCCccc-ccc
Q 018474           99 LTTTK--DG--GVILCDNEK-----GLLKVTEEG--VEAI---VP-DASFTNDVIAASDGTLYFTVASTKYTPTDF-YKD  162 (355)
Q Consensus        99 l~~d~--~g--~L~v~~~~~-----gl~~~~~~g--~~~~---~~-~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~-~~~  162 (355)
                      |.+..  +|  +|||+++..     ++++++.++  .+.+   .. ..+.||+++++++|++|+++... +..... ..+
T Consensus       117 i~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~-ftd~~~~~~e  195 (355)
T 3sre_A          117 ISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHY-FIDPYLKSWE  195 (355)
T ss_dssp             EEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCS-CSSHHHHHHH
T ss_pred             eEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcE-eCCcccccch
Confidence            98743  45  699998774     388888643  3322   22 23899999999999999998641 110000 111


Q ss_pred             ccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCC-CCcceeEecccCCCCcCce
Q 018474          163 MAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGD-RAGILDAFIENLPGGPDNI  241 (355)
Q Consensus       163 ~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~g~p~~i  241 (355)
                      .+++...|++|+|||.  +.+.+..++..||||+++||++.+|++++..++|++|+++.. ..+..+.+  ..++.|||+
T Consensus       196 ~~~~~~~g~vyr~d~~--~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~--~~~g~PDGi  271 (355)
T 3sre_A          196 MHLGLAWSFVTYYSPN--DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL--SFDTLVDNI  271 (355)
T ss_dssp             HHTTCCCEEEEEECTT--CCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE--ECSSEEEEE
T ss_pred             hhccCCccEEEEEECC--eEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE--eCCCCCceE
Confidence            2234557899999984  677778889999999999999999999999999999999642 34455555  457899999


Q ss_pred             EECC-CCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeC---CCCeEEEEEECCCCCcc
Q 018474          242 NLAP-DGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDG---NDGKIIRDFNDPDATYI  317 (355)
Q Consensus       242 ~~d~-~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~g~~~~~~~~~~g~~~  317 (355)
                      ++|+ +|++|+++..++....++             -|+.         .....|.++..   ++++..+.|.+ +|...
T Consensus       272 ~vD~e~G~lwva~~~~g~~v~~~-------------~P~~---------~~~s~v~rI~~~~~~~~~v~~v~~d-dG~~l  328 (355)
T 3sre_A          272 SVDPVTGDLWVGCHPNGMRIFFY-------------DAEN---------PPGSEVLRIQDILSEEPKVTVVYAE-NGTVL  328 (355)
T ss_dssp             EECTTTCCEEEEEESCHHHHHSC-------------CTTS---------CCCEEEEEEECTTSSSCEEEEEEEE-CSSSC
T ss_pred             EEeCCCCcEEEEecCCceEEEEE-------------CCCC---------CCCCEEEEEEccCCCCcEEEEEEEc-CCCEE
Confidence            9999 599999886432222211             1110         12356888873   37888999988 88888


Q ss_pred             cceeEEEEeCCEEEEeecCCCeEEEeeC
Q 018474          318 SFVTSAAEFDGNLYLASLQSNFIGILPL  345 (355)
Q Consensus       318 ~~~~~~~~~~g~L~v~~~~~~~i~~~~~  345 (355)
                      ...+.+.+.+|+||+|+...+ +..|+|
T Consensus       329 ~~~T~a~~~~g~L~iGsv~~~-~l~c~~  355 (355)
T 3sre_A          329 QGSTVAAVYKGKLLIGTVFHK-ALYCDL  355 (355)
T ss_dssp             CSEEEEEEETTEEEEEESSSC-EEEEEC
T ss_pred             EeeEEEEEECCEEEEEEcCCC-ceeccC
Confidence            889989999999999999777 666654

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.96  E-value=5.3e-26  Score=206.46  Aligned_cols=253  Identities=15%  Similarity=0.214  Sum_probs=191.2

Q ss_pred             CceEecCCCCCCCceEEEeeCCC-eEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCC-CcEEEE
Q 018474           42 GLTKLGEGCVNHPEDVSVVVSKG-ALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNE-KGLLKV  119 (355)
Q Consensus        42 ~~~~~~~~~~~~p~~i~~d~~~g-~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~-~gl~~~  119 (355)
                      ..+++..+ +..+|+++++++++ .+|++..+++|+++++ +++...+....+.+. ++++|++|+||+++.. +++.++
T Consensus        36 ~~~~l~~~-~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~~~~~~~~~~-gl~~d~dG~l~v~~~~~~~v~~~  112 (305)
T 3dr2_A           36 RLLTLYDQ-ATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDVLLDATAFTN-GNAVDAQQRLVHCEHGRRAITRS  112 (305)
T ss_dssp             CCEEEECC-CSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEEEEESCSCEE-EEEECTTSCEEEEETTTTEEEEE
T ss_pred             ceEEEecC-CcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEEEeCCCCccc-eeeECCCCCEEEEECCCCEEEEE
Confidence            35667766 68899999997666 4566777899999998 777777766667789 9999999999999876 579999


Q ss_pred             cCCC-eEEEcCC-----cCCcccEEEccCCcEEEEeCCCCCCCcc-cc-ccccccCCCCeEEEEeCCCCeEEEeeccccc
Q 018474          120 TEEG-VEAIVPD-----ASFTNDVIAASDGTLYFTVASTKYTPTD-FY-KDMAEGKPYGQLRKYDPKLKETTVLHEGFYF  191 (355)
Q Consensus       120 ~~~g-~~~~~~~-----~~~~~~l~~d~dG~ly~~d~~~~~~~~~-~~-~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~  191 (355)
                      +.+| ++.+...     ...|++++++++|++|++|..  ++... .. .........++|+++|+++++++.+. .+..
T Consensus       113 ~~~g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~--~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~  189 (305)
T 3dr2_A          113 DADGQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPP--FGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDH  189 (305)
T ss_dssp             CTTSCEEEEECEETTEECSCCCCEEECTTSCEEEECCS--GGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESS
T ss_pred             CCCCCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcC--CCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCC
Confidence            8667 6655432     167999999999999999864  11000 00 00001122468999999888887776 7788


Q ss_pred             cccEEEeCCCCEEEEEeCCC-----CeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeecCCchhhHhhhc
Q 018474          192 ANGIALSKNEDFVVVCESWK-----FRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQK  266 (355)
Q Consensus       192 pngi~~~~dg~~l~v~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~  266 (355)
                      |||++++||++.||++++..     ++|++|++++......+.+.+...+.|+++++|++|++|+++.            
T Consensus       190 p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~------------  257 (305)
T 3dr2_A          190 PNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSSG------------  257 (305)
T ss_dssp             EEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECCS------------
T ss_pred             CcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEecC------------
Confidence            99999999999999999863     7999999865444444555544567899999999999999983            


Q ss_pred             chhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEE--eCCEEEEeecCCCeEEEee
Q 018474          267 CREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAE--FDGNLYLASLQSNFIGILP  344 (355)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~--~~g~L~v~~~~~~~i~~~~  344 (355)
                                                .+|.+|++ +|+.+..+..+.+     ++.++.  +++.||+++.  +.|.+++
T Consensus       258 --------------------------~gv~~~~~-~g~~~~~~~~~~~-----~~~~~f~~d~~~L~it~~--~~l~~~~  303 (305)
T 3dr2_A          258 --------------------------TGVCVFDS-DGQLLGHIPTPGT-----ASNCTFDQAQQRLFITGG--PCLWMLP  303 (305)
T ss_dssp             --------------------------SEEEEECT-TSCEEEEEECSSC-----CCEEEECTTSCEEEEEET--TEEEEEE
T ss_pred             --------------------------CcEEEECC-CCCEEEEEECCCc-----eeEEEEeCCCCEEEEEcC--CeEEEEE
Confidence                                      36999999 9999999987663     334444  4478999995  5788887


Q ss_pred             CC
Q 018474          345 LD  346 (355)
Q Consensus       345 ~~  346 (355)
                      ++
T Consensus       304 ~~  305 (305)
T 3dr2_A          304 LP  305 (305)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.94  E-value=2.2e-24  Score=194.54  Aligned_cols=256  Identities=18%  Similarity=0.234  Sum_probs=190.5

Q ss_pred             ceEecCCCCCCCceEEEeeCCC-eEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCC-CcEEEEc
Q 018474           43 LTKLGEGCVNHPEDVSVVVSKG-ALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNE-KGLLKVT  120 (355)
Q Consensus        43 ~~~~~~~~~~~p~~i~~d~~~g-~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~-~gl~~~~  120 (355)
                      .+.+..+ +..||+++++++++ .+|+++.+++|+++++.++ ...+......|. ++++|++|+||+++.. +++++++
T Consensus        20 ~~~l~~~-~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~-~l~~~~dg~l~v~~~~~~~i~~~d   96 (296)
T 3e5z_A           20 ARRLADG-FTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEMHPSHHQN-GHCLNKQGHLIACSHGLRRLERQR   96 (296)
T ss_dssp             CEEEECC-CSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEESSCSSEE-EEEECTTCCEEEEETTTTEEEEEC
T ss_pred             EEEEecC-CccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEECCCCCcc-eeeECCCCcEEEEecCCCeEEEEc
Confidence            3556554 68899999997666 4667778899999999777 777665566788 9999999999999976 6799999


Q ss_pred             C-CC-eEEEcCC-----cCCcccEEEccCCcEEEEeCCCCC-CCccccccccccCCCCeEEEEeCCCCeEEEeecccccc
Q 018474          121 E-EG-VEAIVPD-----ASFTNDVIAASDGTLYFTVASTKY-TPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFA  192 (355)
Q Consensus       121 ~-~g-~~~~~~~-----~~~~~~l~~d~dG~ly~~d~~~~~-~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~p  192 (355)
                      . +| ++.+...     ...|+++++|++|++|++|+.... ..... .........++|++++++ ++++.+......|
T Consensus        97 ~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~-~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~  174 (296)
T 3e5z_A           97 EPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEG-YGGEMELPGRWVFRLAPD-GTLSAPIRDRVKP  174 (296)
T ss_dssp             STTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGS-SCCCCCSSSCEEEEECTT-SCEEEEECCCSSE
T ss_pred             CCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCcccccccccc-ccccccCCCcEEEEECCC-CCEEEeecCCCCC
Confidence            5 77 6655332     167899999999999999763100 00000 000011224689999997 7777777778889


Q ss_pred             ccEEEeCCCCEEEEEeCCCCeEEEEEeCC-CCC-cceeEecccCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhH
Q 018474          193 NGIALSKNEDFVVVCESWKFRCRRYWLKG-DRA-GILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREK  270 (355)
Q Consensus       193 ngi~~~~dg~~l~v~~~~~~~i~~~~~~~-~~~-~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~  270 (355)
                      ++++++||++.+ ++++..++|++|+++. ... ...+.+ ....+.|+++++|++|++||++ .               
T Consensus       175 ~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~-~---------------  236 (296)
T 3e5z_A          175 NGLAFLPSGNLL-VSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA-G---------------  236 (296)
T ss_dssp             EEEEECTTSCEE-EEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE-T---------------
T ss_pred             ccEEECCCCCEE-EEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc-C---------------
Confidence            999999999977 9999889999999862 223 333445 4455679999999999999999 4               


Q ss_pred             HHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEe---CCEEEEeecCCCeEEEeeCCC
Q 018474          271 WELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF---DGNLYLASLQSNFIGILPLDG  347 (355)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~---~g~L~v~~~~~~~i~~~~~~~  347 (355)
                                            ++|.+|++ +|+.+..+..+.+     ++.++..   +++||+++.  +.+.++++.+
T Consensus       237 ----------------------~~v~~~~~-~g~~~~~~~~~~~-----~~~~~f~~~d~~~L~v~t~--~~l~~~~~~~  286 (296)
T 3e5z_A          237 ----------------------DGVHVLTP-DGDELGRVLTPQT-----TSNLCFGGPEGRTLYMTVS--TEFWSIETNV  286 (296)
T ss_dssp             ----------------------TEEEEECT-TSCEEEEEECSSC-----CCEEEEESTTSCEEEEEET--TEEEEEECSC
T ss_pred             ----------------------CeEEEECC-CCCEEEEEECCCC-----ceeEEEECCCCCEEEEEcC--CeEEEEEccc
Confidence                                  37999999 8999999987664     3344442   368999995  6899998876


Q ss_pred             CCCC
Q 018474          348 PEPQ  351 (355)
Q Consensus       348 ~~~~  351 (355)
                      ..-|
T Consensus       287 ~~~~  290 (296)
T 3e5z_A          287 RGLE  290 (296)
T ss_dssp             CBCC
T ss_pred             cccc
Confidence            5544

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.93  E-value=3.7e-23  Score=187.04  Aligned_cols=239  Identities=13%  Similarity=0.141  Sum_probs=178.2

Q ss_pred             CCCCCCCceEEEeeCCCeEEE-EecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEcC-CC-e
Q 018474           48 EGCVNHPEDVSVVVSKGALYT-ATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE-EG-V  124 (355)
Q Consensus        48 ~~~~~~p~~i~~d~~~g~l~~-~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~-~g-~  124 (355)
                      .....-+|+++++++++.||+ +..+++|+++++.+++...+. ....+. +++++++|+||+++ ..++++++. ++ +
T Consensus         9 ~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~-~~~~~~-~i~~~~dG~l~v~~-~~~l~~~d~~~g~~   85 (297)
T 3g4e_A            9 PENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVT-MDAPVS-SVALRQSGGYVATI-GTKFCALNWKEQSA   85 (297)
T ss_dssp             CCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEE-CSSCEE-EEEEBTTSSEEEEE-TTEEEEEETTTTEE
T ss_pred             ccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEe-CCCceE-EEEECCCCCEEEEE-CCeEEEEECCCCcE
Confidence            334678999999976676665 456789999999888766553 346788 99999999999998 568999995 66 6


Q ss_pred             EEEcCC-----cCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeC
Q 018474          125 EAIVPD-----ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSK  199 (355)
Q Consensus       125 ~~~~~~-----~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~  199 (355)
                      +.+...     ...++++++|++|++|+++......      ........+.+|+++++ ++...+...+..|||++++|
T Consensus        86 ~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~------~~~~~~~~~~l~~~d~~-g~~~~~~~~~~~pngi~~sp  158 (297)
T 3g4e_A           86 VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETA------PAVLERHQGALYSLFPD-HHVKKYFDQVDISNGLDWSL  158 (297)
T ss_dssp             EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSB------TTBCCTTCEEEEEECTT-SCEEEEEEEESBEEEEEECT
T ss_pred             EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccc------cccccCCCcEEEEEECC-CCEEEEeeccccccceEEcC
Confidence            655432     2568999999999999987531100      00011235689999986 56666667778899999999


Q ss_pred             CCCEEEEEeCCCCeEEEEEeC--CCCCcceeEecc--cCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHH
Q 018474          200 NEDFVVVCESWKFRCRRYWLK--GDRAGILDAFIE--NLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLD  275 (355)
Q Consensus       200 dg~~l~v~~~~~~~i~~~~~~--~~~~~~~~~~~~--~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~  275 (355)
                      |++.+|++++..++|++|+++  .......+.+..  ...+.|+++++|++|++||++..+                   
T Consensus       159 dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~-------------------  219 (297)
T 3g4e_A          159 DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNG-------------------  219 (297)
T ss_dssp             TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETT-------------------
T ss_pred             CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCC-------------------
Confidence            999999999999999999974  223333344432  223679999999999999999762                   


Q ss_pred             hccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeC---CEEEEeecC
Q 018474          276 AYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFD---GNLYLASLQ  336 (355)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~---g~L~v~~~~  336 (355)
                                       +.|.+||+++|+.+..+..+..    .++.+++.+   ++|||++..
T Consensus       220 -----------------~~v~~~d~~tG~~~~~i~~p~~----~~t~~~f~g~d~~~L~vt~~~  262 (297)
T 3g4e_A          220 -----------------GRVIRLDPVTGKRLQTVKLPVD----KTTSCCFGGKNYSEMYVTCAR  262 (297)
T ss_dssp             -----------------TEEEEECTTTCCEEEEEECSSS----BEEEEEEESGGGCEEEEEEBC
T ss_pred             -----------------CEEEEEcCCCceEEEEEECCCC----CceEEEEeCCCCCEEEEEcCC
Confidence                             4699999944999888877643    466677652   789999864

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.92  E-value=1.1e-22  Score=184.08  Aligned_cols=259  Identities=17%  Similarity=0.244  Sum_probs=187.7

Q ss_pred             eEecCCCCCCCceEEEeeCCCeEEEE--------ecCCEEEEEEcCCCeeEEeec-----cCCCcccCeEECCC-CCEEE
Q 018474           44 TKLGEGCVNHPEDVSVVVSKGALYTA--------TRDGWVKYFILHNETLVNWKH-----IDSQSLLGLTTTKD-GGVIL  109 (355)
Q Consensus        44 ~~~~~~~~~~p~~i~~d~~~g~l~~~--------~~~g~i~~~~~~~g~~~~~~~-----~~~~p~~gl~~d~~-g~L~v  109 (355)
                      +.+..+ +..|++++++ .++.+|++        ..+++|+++++.+++...+..     ....|. ++++|++ |+||+
T Consensus        11 ~~~~~~-~~~~~~~~~~-~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~-~i~~~~~~g~l~v   87 (314)
T 1pjx_A           11 TKVTED-IPGAEGPVFD-KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPA-GCQCDRDANQLFV   87 (314)
T ss_dssp             EEEECC-CTTCEEEEEC-TTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEE-EEEECSSSSEEEE
T ss_pred             hhhhcc-CCCccCceEC-CCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCc-eEEEecCCCcEEE
Confidence            455544 7899999999 67788887        668899999988888776643     235688 9999999 99999


Q ss_pred             EeCCCcEEEEcCCC-eEEE-cCC-----cCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeE
Q 018474          110 CDNEKGLLKVTEEG-VEAI-VPD-----ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKET  182 (355)
Q Consensus       110 ~~~~~gl~~~~~~g-~~~~-~~~-----~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~  182 (355)
                      ++..+++++++.+| ++.+ ...     ...|+++++|++|++|+++........++.  .......++++++|++ ++.
T Consensus        88 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~-g~~  164 (314)
T 1pjx_A           88 ADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYT--RSMQEKFGSIYCFTTD-GQM  164 (314)
T ss_dssp             EETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCC--BTTSSSCEEEEEECTT-SCE
T ss_pred             EECCCCEEEEeCCCCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCccccccccc--ccccCCCCeEEEECCC-CCE
Confidence            99777899999558 6655 321     156999999999999999864210000000  0011234689999987 777


Q ss_pred             EEeeccccccccEEEe----CCCCEEEEEeCCCCeEEEEEeCC-CCCcceeEecc--cCC-CCcCceEECCCCCEEEEee
Q 018474          183 TVLHEGFYFANGIALS----KNEDFVVVCESWKFRCRRYWLKG-DRAGILDAFIE--NLP-GGPDNINLAPDGSFWIGLI  254 (355)
Q Consensus       183 ~~~~~~~~~pngi~~~----~dg~~l~v~~~~~~~i~~~~~~~-~~~~~~~~~~~--~~~-g~p~~i~~d~~G~lwv~~~  254 (355)
                      +.+......|++++++    +|++.+|++++..++|++|++++ ......+.+..  ... +.|+++++|++|++|+++.
T Consensus       165 ~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~  244 (314)
T 1pjx_A          165 IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANW  244 (314)
T ss_dssp             EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEE
T ss_pred             EEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEc
Confidence            6666666779999999    99988999998889999999752 22222222221  111 5689999999999999986


Q ss_pred             cCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEe-CC-EEEE
Q 018474          255 KMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-DG-NLYL  332 (355)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g-~L~v  332 (355)
                      ..                                    ++|.++++++|+.+..+..+.    ..++.++.+ ++ .||+
T Consensus       245 ~~------------------------------------~~i~~~d~~~g~~~~~~~~~~----~~~~~i~~~~dg~~l~v  284 (314)
T 1pjx_A          245 GS------------------------------------SHIEVFGPDGGQPKMRIRCPF----EKPSNLHFKPQTKTIFV  284 (314)
T ss_dssp             TT------------------------------------TEEEEECTTCBSCSEEEECSS----SCEEEEEECTTSSEEEE
T ss_pred             CC------------------------------------CEEEEEcCCCCcEeEEEeCCC----CCceeEEECCCCCEEEE
Confidence            42                                    479999993388777776543    245666654 34 4999


Q ss_pred             eecCCCeEEEeeCCCC
Q 018474          333 ASLQSNFIGILPLDGP  348 (355)
Q Consensus       333 ~~~~~~~i~~~~~~~~  348 (355)
                      ++...+.|.++++...
T Consensus       285 ~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          285 TEHENNAVWKFEWQRN  300 (314)
T ss_dssp             EETTTTEEEEEECSSC
T ss_pred             EeCCCCeEEEEeCCCC
Confidence            9998899999998653

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.90  E-value=4.5e-21  Score=182.32  Aligned_cols=241  Identities=13%  Similarity=0.106  Sum_probs=181.9

Q ss_pred             CCCCCceEEEeeC--CCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCC-----CcEEEEcCC
Q 018474           50 CVNHPEDVSVVVS--KGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNE-----KGLLKVTEE  122 (355)
Q Consensus        50 ~~~~p~~i~~d~~--~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~-----~gl~~~~~~  122 (355)
                      .+..|.+|++|++  ++.||++...++|+++++++++...+......|. ++++|++|+|||++..     .+++.++..
T Consensus       137 ~~~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~-giavd~dG~lyVad~~~~~~~~gv~~~~~~  215 (433)
T 4hw6_A          137 AFDNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCA-DVNFTLNGDMVVVDDQSSDTNTGIYLFTRA  215 (433)
T ss_dssp             CCSCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEE-EEEECTTCCEEEEECCSCTTSEEEEEECGG
T ss_pred             ccCCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCcc-EEEECCCCCEEEEcCCCCcccceEEEEECC
Confidence            6789999999963  6899998776889999998998888766566799 9999999999999973     357777743


Q ss_pred             C--e--EEEcCCcCCcccEEEcc-CCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeE-EEeec--ccccccc
Q 018474          123 G--V--EAIVPDASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKET-TVLHE--GFYFANG  194 (355)
Q Consensus       123 g--~--~~~~~~~~~~~~l~~d~-dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~-~~~~~--~~~~png  194 (355)
                      +  .  ..+. ....|+++++|+ +|+||+++..                 .++++++|++++++ +.+..  ....+.+
T Consensus       216 ~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~-----------------~~~V~~~d~~~g~~~~~~~~~~~~~~~~~  277 (433)
T 4hw6_A          216 SGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYH-----------------HAMISSYDPATGTLTEEEVMMDTKGSNFH  277 (433)
T ss_dssp             GTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTT-----------------CSEEEEECTTTCCEEEEEEECSCCSSCEE
T ss_pred             CCeecccccc-ccCCCCEEEEeCCCCeEEEEECC-----------------CCEEEEEECCCCeEEEEEeccCCCCCccc
Confidence            3  2  2333 347899999999 8999999865                 56899999987776 33322  2234567


Q ss_pred             EEEeCCCCEEEEEeCCCCeEEEEEeCCC--CCcceeEeccc--CC------------CCcCceEE---------CCCCCE
Q 018474          195 IALSKNEDFVVVCESWKFRCRRYWLKGD--RAGILDAFIEN--LP------------GGPDNINL---------APDGSF  249 (355)
Q Consensus       195 i~~~~dg~~l~v~~~~~~~i~~~~~~~~--~~~~~~~~~~~--~~------------g~p~~i~~---------d~~G~l  249 (355)
                      ++++++++.||++++..++|++++.++.  .......++..  ..            ..|.++++         |++|+|
T Consensus       278 ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~l  357 (433)
T 4hw6_A          278 IVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDF  357 (433)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEE
T ss_pred             EEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcE
Confidence            9999999999999999999999998642  22222233321  11            23777999         999999


Q ss_pred             EEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECC--------CC-----Cc
Q 018474          250 WIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDP--------DA-----TY  316 (355)
Q Consensus       250 wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~--------~g-----~~  316 (355)
                      ||+....                                    ..|.++++ +|+........        +|     ..
T Consensus       358 yvaD~~n------------------------------------~~I~~~~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~  400 (433)
T 4hw6_A          358 YFCDRDS------------------------------------HTVRVLTP-EGRVTTYAGRGNSREWGYVDGELRSQAL  400 (433)
T ss_dssp             EEEETTT------------------------------------TEEEEECT-TSEEEEEECCCTTCSSCCBCEETTTTCB
T ss_pred             EEEECCC------------------------------------CEEEEECC-CCCEEEEEeCCCCCccccCCCccccccE
Confidence            9998652                                    47999999 99766555321        12     12


Q ss_pred             ccceeEEEEe--CCEEEEeecCCCeEEEeeCC
Q 018474          317 ISFVTSAAEF--DGNLYLASLQSNFIGILPLD  346 (355)
Q Consensus       317 ~~~~~~~~~~--~g~L~v~~~~~~~i~~~~~~  346 (355)
                      +..+.+++.+  +|+|||++..+++|.++.+.
T Consensus       401 ~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          401 FNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             CSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             eCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            4567788877  69999999999999999864

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.90  E-value=9.1e-21  Score=172.10  Aligned_cols=229  Identities=17%  Similarity=0.214  Sum_probs=167.8

Q ss_pred             eEecCCCCCCCceEEEeeCCCeEEEEe-cCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCC-Cc--EEEE
Q 018474           44 TKLGEGCVNHPEDVSVVVSKGALYTAT-RDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNE-KG--LLKV  119 (355)
Q Consensus        44 ~~~~~~~~~~p~~i~~d~~~g~l~~~~-~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~-~g--l~~~  119 (355)
                      ..++.+  ..||+++++ .++.||++. .+++|+++++.+ +...+......|. +++++++|+|||++.. ++  ++++
T Consensus        26 ~~~p~~--~~pegia~~-~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~~~~p~-gia~~~dG~l~vad~~~~~~~v~~~  100 (306)
T 2p4o_A           26 TSFPVN--TFLENLASA-PDGTIFVTNHEVGEIVSITPDG-NQQIHATVEGKVS-GLAFTSNGDLVATGWNADSIPVVSL  100 (306)
T ss_dssp             EEECTT--CCEEEEEEC-TTSCEEEEETTTTEEEEECTTC-CEEEEEECSSEEE-EEEECTTSCEEEEEECTTSCEEEEE
T ss_pred             EeCCCC--CCcceEEEC-CCCCEEEEeCCCCeEEEECCCC-ceEEEEeCCCCce-eEEEcCCCcEEEEeccCCcceEEEE
Confidence            445544  689999999 466788876 579999999854 4444444556799 9999999999999854 23  8888


Q ss_pred             c-CCC-eEEEcCC--cCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEe----------
Q 018474          120 T-EEG-VEAIVPD--ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL----------  185 (355)
Q Consensus       120 ~-~~g-~~~~~~~--~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~----------  185 (355)
                      + ++| ++.+...  ..++++++..+++.+|+++..                 .+.+|++|+.+++.+..          
T Consensus       101 d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~-----------------~g~i~~~d~~~~~~~v~~~~~~~~~~~  163 (306)
T 2p4o_A          101 VKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSY-----------------RGAIWLIDVVQPSGSIWLEHPMLARSN  163 (306)
T ss_dssp             ECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETT-----------------TTEEEEEETTTTEEEEEEECGGGSCSS
T ss_pred             cCCCCeEEEEEeCCCccccCcccccCCCcEEEEECC-----------------CCeEEEEeCCCCcEeEEEECCcccccc
Confidence            8 577 6655432  267888888888889998864                 56899999876643322          


Q ss_pred             -eccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCC-CCCcceeEecccCCCCcCceEECCCCCEEEEeecCCchhhHh
Q 018474          186 -HEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKG-DRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRA  263 (355)
Q Consensus       186 -~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~  263 (355)
                       ...+..||||  ++|++.+|++++..++|++|++++ ...+..+.+.. . ..|+++++|++|++||+....       
T Consensus       164 ~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~-~~P~gi~vd~dG~l~va~~~~-------  232 (306)
T 2p4o_A          164 SESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-Q-TNIDDFAFDVEGNLYGATHIY-------  232 (306)
T ss_dssp             TTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-S-CCCSSEEEBTTCCEEEECBTT-------
T ss_pred             ccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-c-CCCCCeEECCCCCEEEEeCCC-------
Confidence             1234578998  889999999999999999999975 33444454442 2 469999999999999998652       


Q ss_pred             hhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEe-----CCEEEEeecCC
Q 018474          264 IQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-----DGNLYLASLQS  337 (355)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-----~g~L~v~~~~~  337 (355)
                                                   +.|.+|++ +|+.......+.+  ...+++++..     .++||+++..+
T Consensus       233 -----------------------------~~V~~~~~-~G~~~~~~~~~~~--~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          233 -----------------------------NSVVRIAP-DRSTTIIAQAEQG--VIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             -----------------------------CCEEEECT-TCCEEEEECGGGT--CTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             -----------------------------CeEEEECC-CCCEEEEeecccc--cCCceEEEEecccCCCCEEEEECCCC
Confidence                                         46999999 8987543333222  2456777764     38999998753

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.89  E-value=1.9e-20  Score=171.61  Aligned_cols=239  Identities=18%  Similarity=0.181  Sum_probs=177.9

Q ss_pred             ceEecCCCCCCCceEEEeeCCCeEE-EEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEcC
Q 018474           43 LTKLGEGCVNHPEDVSVVVSKGALY-TATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE  121 (355)
Q Consensus        43 ~~~~~~~~~~~p~~i~~d~~~g~l~-~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~  121 (355)
                      .+.+......-+|+++++++++.+| ++..+++|+++++++++...+.. ...+. +++++++|++|+++ ..++++++.
T Consensus        40 ~~~~~~~~~~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~-~~~v~-~i~~~~dg~l~v~~-~~gl~~~d~  116 (326)
T 2ghs_A           40 GRVLDETPMLLGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHAL-PFMGS-ALAKISDSKQLIAS-DDGLFLRDT  116 (326)
T ss_dssp             CEEEECSCCSBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEEC-SSCEE-EEEEEETTEEEEEE-TTEEEEEET
T ss_pred             eEEeeccCCCCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEC-CCcce-EEEEeCCCeEEEEE-CCCEEEEEC
Confidence            4666655566799999997656655 45567899999998887766543 35678 89999999999998 558999995


Q ss_pred             -CC-eEEEcCC-----cCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecccccccc
Q 018474          122 -EG-VEAIVPD-----ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANG  194 (355)
Q Consensus       122 -~g-~~~~~~~-----~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~png  194 (355)
                       +| ++.+...     ...++++++|++|++|+++....           .....++|++++  +++.+.+......|++
T Consensus       117 ~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~-----------~~~~~~~l~~~~--~g~~~~~~~~~~~~~~  183 (326)
T 2ghs_A          117 ATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRK-----------AETGAGSIYHVA--KGKVTKLFADISIPNS  183 (326)
T ss_dssp             TTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETT-----------CCTTCEEEEEEE--TTEEEEEEEEESSEEE
T ss_pred             CCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCc-----------CCCCceEEEEEe--CCcEEEeeCCCcccCC
Confidence             67 6655432     14689999999999999874310           012356899999  5777766666677999


Q ss_pred             EEEeCCCCEEEEEeCCCCeEEEEEeC--CC-CCcceeEecc--cCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchh
Q 018474          195 IALSKNEDFVVVCESWKFRCRRYWLK--GD-RAGILDAFIE--NLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCRE  269 (355)
Q Consensus       195 i~~~~dg~~l~v~~~~~~~i~~~~~~--~~-~~~~~~~~~~--~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~  269 (355)
                      +++++|++.+|++++..++|++|+++  +. .....+.+..  ...+.|+++++|++|++|+++...             
T Consensus       184 i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~-------------  250 (326)
T 2ghs_A          184 ICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGE-------------  250 (326)
T ss_dssp             EEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETT-------------
T ss_pred             eEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCC-------------
Confidence            99999999999999888999999985  33 3333233322  234678999999999999998652             


Q ss_pred             HHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEe---CCEEEEeecCCC
Q 018474          270 KWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF---DGNLYLASLQSN  338 (355)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~---~g~L~v~~~~~~  338 (355)
                                             ++|.+|++ +|+.+..+..+..    .++.++..   .+.||+++...+
T Consensus       251 -----------------------~~v~~~d~-~g~~~~~i~~~~~----~~~~~af~g~d~~~L~vt~~~~~  294 (326)
T 2ghs_A          251 -----------------------GAVDRYDT-DGNHIARYEVPGK----QTTCPAFIGPDASRLLVTSAREH  294 (326)
T ss_dssp             -----------------------TEEEEECT-TCCEEEEEECSCS----BEEEEEEESTTSCEEEEEEBCTT
T ss_pred             -----------------------CEEEEECC-CCCEEEEEECCCC----CcEEEEEecCCCCEEEEEecCCC
Confidence                                   47999999 9998888876543    46666654   268999987653

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.89  E-value=2.7e-20  Score=166.60  Aligned_cols=241  Identities=14%  Similarity=0.201  Sum_probs=177.1

Q ss_pred             CCCCCCCceEEEeeCCCeEEEEe-cCCEEEEEEcCCCeeEEeecc------CCCcccCeEE-CCCCCEEEEeC--CCcEE
Q 018474           48 EGCVNHPEDVSVVVSKGALYTAT-RDGWVKYFILHNETLVNWKHI------DSQSLLGLTT-TKDGGVILCDN--EKGLL  117 (355)
Q Consensus        48 ~~~~~~p~~i~~d~~~g~l~~~~-~~g~i~~~~~~~g~~~~~~~~------~~~p~~gl~~-d~~g~L~v~~~--~~gl~  117 (355)
                      .+.+..|.+++++ .++.+|++. .+++|.++++.......+...      ...|. ++++ +++|+||+++.  .+.+.
T Consensus        26 ~g~~~~p~~v~~~-~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~-~i~~~~~~g~l~v~~~~~~~~i~  103 (286)
T 1q7f_A           26 EGQFTEPSGVAVN-AQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPN-RVAVVRNSGDIIVTERSPTHQIQ  103 (286)
T ss_dssp             TTCBSCEEEEEEC-TTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEE-EEEEETTTTEEEEEECGGGCEEE
T ss_pred             CCccCCCceEEEC-CCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCce-EEEEEcCCCeEEEEcCCCCCEEE
Confidence            3567899999999 567788875 578999999854334444321      13588 9999 68999999985  45788


Q ss_pred             EEcCCC--eEEEcCC-cCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee--cccccc
Q 018474          118 KVTEEG--VEAIVPD-ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH--EGFYFA  192 (355)
Q Consensus       118 ~~~~~g--~~~~~~~-~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~--~~~~~p  192 (355)
                      +++++|  ++.+... ...|++++++++|++|+++..                 .+.+++||+++.....+.  .....|
T Consensus       104 ~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-----------------~~~i~~~~~~g~~~~~~~~~~~~~~p  166 (286)
T 1q7f_A          104 IYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECK-----------------VMRVIIFDQNGNVLHKFGCSKHLEFP  166 (286)
T ss_dssp             EECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETT-----------------TTEEEEECTTSCEEEEEECTTTCSSE
T ss_pred             EECCCCcEEEEecCccCCCceEEEEeCCCCEEEEECC-----------------CCEEEEEcCCCCEEEEeCCCCccCCc
Confidence            888766  5555432 367999999999999999765                 468999998765555443  345679


Q ss_pred             ccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecc-cCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHH
Q 018474          193 NGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIE-NLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKW  271 (355)
Q Consensus       193 ngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~  271 (355)
                      ++++++++|+ +|+++...++|.+|+.++..   ...+.. .....|.++++|++|++||++...               
T Consensus       167 ~~i~~~~~g~-l~v~~~~~~~i~~~~~~g~~---~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~---------------  227 (286)
T 1q7f_A          167 NGVVVNDKQE-IFISDNRAHCVKVFNYEGQY---LRQIGGEGITNYPIGVGINSNGEILIADNHN---------------  227 (286)
T ss_dssp             EEEEECSSSE-EEEEEGGGTEEEEEETTCCE---EEEESCTTTSCSEEEEEECTTCCEEEEECSS---------------
T ss_pred             EEEEECCCCC-EEEEECCCCEEEEEcCCCCE---EEEEccCCccCCCcEEEECCCCCEEEEeCCC---------------
Confidence            9999999987 99999888999999976532   222321 112468999999999999998652               


Q ss_pred             HHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEe-CCEEEEeecCCCeEEEeeCCCCCC
Q 018474          272 ELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-DGNLYLASLQSNFIGILPLDGPEP  350 (355)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~~~~~~~  350 (355)
                                          ...|.+|++ +|+.+..+.....  ...+..++.+ +|+||+++. .+.|.++++....|
T Consensus       228 --------------------~~~i~~~~~-~g~~~~~~~~~~~--~~~~~~i~~~~~g~l~vs~~-~~~v~v~~~~~~~p  283 (286)
T 1q7f_A          228 --------------------NFNLTIFTQ-DGQLISALESKVK--HAQCFDVALMDDGSVVLASK-DYRLYIYRYVQLAP  283 (286)
T ss_dssp             --------------------SCEEEEECT-TSCEEEEEEESSC--CSCEEEEEEETTTEEEEEET-TTEEEEEECSCCCC
T ss_pred             --------------------CEEEEEECC-CCCEEEEEcccCC--CCcceeEEECCCCcEEEECC-CCeEEEEEcccccc
Confidence                                127999999 9998888865432  2245556655 599999975 78999999876544

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.88  E-value=1.6e-20  Score=171.62  Aligned_cols=248  Identities=19%  Similarity=0.234  Sum_probs=179.9

Q ss_pred             CCCCCceEEEeeCCCeEEE-EecCCEEEEEEcCCCeeEEee-ccCCCcccCeEECCCCCEEEEeCCC-----cEEEEcC-
Q 018474           50 CVNHPEDVSVVVSKGALYT-ATRDGWVKYFILHNETLVNWK-HIDSQSLLGLTTTKDGGVILCDNEK-----GLLKVTE-  121 (355)
Q Consensus        50 ~~~~p~~i~~d~~~g~l~~-~~~~g~i~~~~~~~g~~~~~~-~~~~~p~~gl~~d~~g~L~v~~~~~-----gl~~~~~-  121 (355)
                      ....|++++++ .++.+|+ +..+++|+++++++++...+. .....|. ++++|++|+||+++...     ++++++. 
T Consensus        43 ~~~~~~~~~~~-~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~-~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~  120 (333)
T 2dg1_A           43 KGLQLEGLNFD-RQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPA-AIKIHKDGRLFVCYLGDFKSTGGIFAATEN  120 (333)
T ss_dssp             SCCCEEEEEEC-TTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEE-EEEECTTSCEEEEECTTSSSCCEEEEECTT
T ss_pred             cCccccCcEEC-CCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcc-eEEECCCCcEEEEeCCCCCCCceEEEEeCC
Confidence            35789999999 5666775 566889999999888877664 3345688 99999999999998664     7999995 


Q ss_pred             CC-eE-EEcC--CcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEE
Q 018474          122 EG-VE-AIVP--DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIAL  197 (355)
Q Consensus       122 ~g-~~-~~~~--~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~  197 (355)
                      ++ .+ .+..  ....++++++|++|++|+++....           .....++|+++|+++++.+.+......|+++++
T Consensus       121 ~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~-----------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~  189 (333)
T 2dg1_A          121 GDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGY-----------STNPLGGVYYVSPDFRTVTPIIQNISVANGIAL  189 (333)
T ss_dssp             SCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCB-----------TTBCCEEEEEECTTSCCEEEEEEEESSEEEEEE
T ss_pred             CCEEEEEEccCccCCcccceEECCCCCEEEEecccc-----------ccCCCceEEEEeCCCCEEEEeecCCCcccceEE
Confidence            44 54 3332  126799999999999999875410           012246899999988777766656667999999


Q ss_pred             eCCCCEEEEEeCCCCeEEEEEeCC--CCCcce--eEecccCC--CCcCceEECCCCCEEEEeecCCchhhHhhhcchhHH
Q 018474          198 SKNEDFVVVCESWKFRCRRYWLKG--DRAGIL--DAFIENLP--GGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKW  271 (355)
Q Consensus       198 ~~dg~~l~v~~~~~~~i~~~~~~~--~~~~~~--~~~~~~~~--g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~  271 (355)
                      ++|++.+|++++..++|++|+++.  ......  +.+. ...  ..|+++++|++|++|+++...               
T Consensus       190 ~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~-~~~~~~~~~~i~~d~~G~l~v~~~~~---------------  253 (333)
T 2dg1_A          190 STDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPY-YFTGHEGPDSCCIDSDDNLYVAMYGQ---------------  253 (333)
T ss_dssp             CTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEE-ECCSSSEEEEEEEBTTCCEEEEEETT---------------
T ss_pred             CCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEE-ecCCCCCCCceEECCCCCEEEEEcCC---------------
Confidence            999999999998888999999853  212111  1111 112  368999999999999998652               


Q ss_pred             HHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCC--cccceeEEEEe--CCEEEEeecCC-----CeEEE
Q 018474          272 ELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDAT--YISFVTSAAEF--DGNLYLASLQS-----NFIGI  342 (355)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~--~~~~~~~~~~~--~g~L~v~~~~~-----~~i~~  342 (355)
                                           ++|.++++ +|+.+..+..+...  ....+..++..  +++||+++..+     ..|.+
T Consensus       254 ---------------------~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~  311 (333)
T 2dg1_A          254 ---------------------GRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYT  311 (333)
T ss_dssp             ---------------------TEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEE
T ss_pred             ---------------------CEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEE
Confidence                                 47999999 89988888765320  01134555553  36899998763     47888


Q ss_pred             eeCCCC
Q 018474          343 LPLDGP  348 (355)
Q Consensus       343 ~~~~~~  348 (355)
                      +++...
T Consensus       312 ~~~~~~  317 (333)
T 2dg1_A          312 VNGFAK  317 (333)
T ss_dssp             EECSSC
T ss_pred             EecccC
Confidence            876644

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.88  E-value=2e-20  Score=177.89  Aligned_cols=241  Identities=12%  Similarity=0.093  Sum_probs=181.0

Q ss_pred             CCCCCceEEEee-CCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCCC-----cEEEEcCC
Q 018474           50 CVNHPEDVSVVV-SKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEK-----GLLKVTEE  122 (355)
Q Consensus        50 ~~~~p~~i~~d~-~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~~-----gl~~~~~~  122 (355)
                      ++..|.+|++|| +++.||++...++|.+++++++++..+......|. ++++|++|+ ||+++...     .++.++++
T Consensus       135 ~~~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~-~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~  213 (430)
T 3tc9_A          135 GFGGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVR-TICWTHEADSMIITNDQNNNDRPNNYILTRE  213 (430)
T ss_dssp             CCSCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEE-EEEECTTSSEEEEEECCSCTTSEEEEEEEGG
T ss_pred             CCCCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcc-eEEEeCCCCEEEEEeCCCCcccceEEEEeCC
Confidence            478999999996 47899998877899999998888777766667799 999999998 99999742     35556654


Q ss_pred             C-e---EEEcCCcCCcccEEEcc-CCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee--ccccccccE
Q 018474          123 G-V---EAIVPDASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH--EGFYFANGI  195 (355)
Q Consensus       123 g-~---~~~~~~~~~~~~l~~d~-dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~--~~~~~pngi  195 (355)
                      | .   ..+. ....|+++++++ +|+||++|..                 .+++++|+++++....+.  .....|+++
T Consensus       214 g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~-----------------~~~V~~~~~~~~~~~~~~~~~~~~~P~gi  275 (430)
T 3tc9_A          214 SGFKVITELT-KGQNCNGAETHPINGELYFNSWN-----------------AGQVFRYDFTTQETTPLFTIQDSGWEFHI  275 (430)
T ss_dssp             GTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETT-----------------TTEEEEEETTTTEEEEEEECSSSSCCEEE
T ss_pred             Cceeeeeeec-cCCCceEEEEeCCCCEEEEEECC-----------------CCEEEEEECCCCcEEEEEEcCCCCcceeE
Confidence            4 2   2333 247899999999 8899999875                 568999999888763332  233579999


Q ss_pred             EEeCCCCEEEEEeCCCCeEEEEEeCCC--CCcceeEeccc--CC------------CCcC-ceEE--------CCCCCEE
Q 018474          196 ALSKNEDFVVVCESWKFRCRRYWLKGD--RAGILDAFIEN--LP------------GGPD-NINL--------APDGSFW  250 (355)
Q Consensus       196 ~~~~dg~~l~v~~~~~~~i~~~~~~~~--~~~~~~~~~~~--~~------------g~p~-~i~~--------d~~G~lw  250 (355)
                      +++++|+.+|+++...++|++++.++.  .......+...  ..            ..|. ++++        |++|+||
T Consensus       276 a~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~ly  355 (430)
T 3tc9_A          276 QFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFY  355 (430)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEE
T ss_pred             EEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEE
Confidence            999999999999999999999998753  12222223211  11            1366 6776        5679999


Q ss_pred             EEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECC--------CC-----Ccc
Q 018474          251 IGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDP--------DA-----TYI  317 (355)
Q Consensus       251 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~--------~g-----~~~  317 (355)
                      |+....                                    ..|.++++ +|+........        +|     ..+
T Consensus       356 vaD~~n------------------------------------~~I~~i~~-~G~v~~~~g~g~~~~~G~~dG~~~~~~~~  398 (430)
T 3tc9_A          356 FCDREN------------------------------------HCIRILTP-QGRVTTFAGRGSNGTSGYNDGDLRQEARF  398 (430)
T ss_dssp             EEEGGG------------------------------------TEEEEECT-TSEEEEEEECCTTSSSSCBCEETTTTCBC
T ss_pred             EEECCC------------------------------------cEEEEECC-CCcEEEEEeCCCCCCCcccCCCchhhcEe
Confidence            998752                                    47999999 99876665431        22     124


Q ss_pred             cceeEEEEe--CCEEEEeecCCCeEEEeeCC
Q 018474          318 SFVTSAAEF--DGNLYLASLQSNFIGILPLD  346 (355)
Q Consensus       318 ~~~~~~~~~--~g~L~v~~~~~~~i~~~~~~  346 (355)
                      ..+.+++.+  +++|||++..+++|.++.++
T Consensus       399 ~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          399 NHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             SSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             CCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence            567788876  49999999999999999764

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.88  E-value=2.2e-20  Score=165.38  Aligned_cols=235  Identities=16%  Similarity=0.162  Sum_probs=169.1

Q ss_pred             CCceEEEeeCCCeEEE-E-ecCCEEEEEEcCCCeeEEeecc-CCCcccCeEECCCCCEEEEeCCCcEEEEcCCC--eEEE
Q 018474           53 HPEDVSVVVSKGALYT-A-TRDGWVKYFILHNETLVNWKHI-DSQSLLGLTTTKDGGVILCDNEKGLLKVTEEG--VEAI  127 (355)
Q Consensus        53 ~p~~i~~d~~~g~l~~-~-~~~g~i~~~~~~~g~~~~~~~~-~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~~g--~~~~  127 (355)
                      .|++|+++ .+|.+|+ + ..+++|.++++.++....+... ...|. ++++|++|+||+++..+++++++.++  ...+
T Consensus        25 ~p~~i~~~-~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~-~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~~~  102 (270)
T 1rwi_B           25 SPSGVAVD-SAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQ-GLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVL  102 (270)
T ss_dssp             CEEEEEEC-TTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCC-CEEECTTCCEEEEETTTEEEEECTTCSCCEEC
T ss_pred             CccceEEC-CCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcc-eeEECCCCCEEEEcCCCEEEEEeCCCceEeee
Confidence            99999999 5667998 7 4578999999865554443222 24688 99999999999999756789998654  4444


Q ss_pred             cC-CcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEe-eccccccccEEEeCCCCEEE
Q 018474          128 VP-DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL-HEGFYFANGIALSKNEDFVV  205 (355)
Q Consensus       128 ~~-~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~-~~~~~~pngi~~~~dg~~l~  205 (355)
                      .. ....|++++++++|++|+++..                 .+.++++++.+...... ......|++++++++|+ +|
T Consensus       103 ~~~~~~~p~~i~~~~~g~l~v~~~~-----------------~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~  164 (270)
T 1rwi_B          103 PFDGLNYPEGLAVDTQGAVYVADRG-----------------NNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN-VY  164 (270)
T ss_dssp             CCCSCSSEEEEEECTTCCEEEEEGG-----------------GTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCC-EE
T ss_pred             ecCCcCCCcceEECCCCCEEEEECC-----------------CCEEEEEECCCceeEeeccccCCCceeEEEeCCCC-EE
Confidence            32 2267999999999999999754                 45799998765543322 23356799999999998 99


Q ss_pred             EEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhccc
Q 018474          206 VCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLL  285 (355)
Q Consensus       206 v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (355)
                      +++...++|.+|+.++....   .........|.++++|++|++|+++...                             
T Consensus       165 v~~~~~~~i~~~~~~~~~~~---~~~~~~~~~p~~i~~d~~g~l~v~~~~~-----------------------------  212 (270)
T 1rwi_B          165 VTDTDNNRVVKLEAESNNQV---VLPFTDITAPWGIAVDEAGTVYVTEHNT-----------------------------  212 (270)
T ss_dssp             EEEGGGTEEEEECTTTCCEE---ECCCSSCCSEEEEEECTTCCEEEEETTT-----------------------------
T ss_pred             EEECCCCEEEEEecCCCceE---eecccCCCCceEEEECCCCCEEEEECCC-----------------------------
Confidence            99988889999997653221   1111111458999999999999998642                             


Q ss_pred             CCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEe-CCEEEEeecCCCeEEEeeCCCCCC
Q 018474          286 PMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-DGNLYLASLQSNFIGILPLDGPEP  350 (355)
Q Consensus       286 ~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~~~~~~~  350 (355)
                             +.|.++++ +++....... .+  ...+.+++.+ +|+||+++..+++|.++++.....
T Consensus       213 -------~~v~~~~~-~~~~~~~~~~-~~--~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          213 -------NQVVKLLA-GSTTSTVLPF-TG--LNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH  267 (270)
T ss_dssp             -------SCEEEECT-TCSCCEECCC-CS--CSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred             -------CcEEEEcC-CCCcceeecc-CC--CCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence                   36999999 7764443322 22  2456677765 489999999999999999876543

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.86  E-value=7.4e-19  Score=157.30  Aligned_cols=230  Identities=17%  Similarity=0.274  Sum_probs=173.7

Q ss_pred             CCCCceEEEeeCCCeEEEEec-CCEEEEEEcCCCeeEEeec--cCCCcccCeEECCCCCEEEEeCC-CcEEEEcCCC-eE
Q 018474           51 VNHPEDVSVVVSKGALYTATR-DGWVKYFILHNETLVNWKH--IDSQSLLGLTTTKDGGVILCDNE-KGLLKVTEEG-VE  125 (355)
Q Consensus        51 ~~~p~~i~~d~~~g~l~~~~~-~g~i~~~~~~~g~~~~~~~--~~~~p~~gl~~d~~g~L~v~~~~-~gl~~~~~~g-~~  125 (355)
                      ...|.+|+++ .+|.+|+++. +++|.++++. ++...+..  ....|. ++++|++|++|+++.. +++++++.++ .+
T Consensus        14 ~~~~~~i~~d-~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~-~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~   90 (299)
T 2z2n_A           14 DTGPYGITVS-DKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVM-CLTISSDGEVWFTENAANKIGRITKKGIIK   90 (299)
T ss_dssp             SCCEEEEEEC-TTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEE-EEEECTTSCEEEEETTTTEEEEECTTSCEE
T ss_pred             CCCccceEEC-CCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCcee-eEEECCCCCEEEeCCCCCeEEEECCCCcEE
Confidence            5789999999 6788999887 6899999996 77766542  235688 9999999999999874 5689998667 65


Q ss_pred             EEcC--CcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee--ccccccccEEEeCCC
Q 018474          126 AIVP--DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH--EGFYFANGIALSKNE  201 (355)
Q Consensus       126 ~~~~--~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~--~~~~~pngi~~~~dg  201 (355)
                      .+..  ....|++++++++|++|+++..                 .++++++|+ +++...+.  .....|++++++++|
T Consensus        91 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~-----------------~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g  152 (299)
T 2z2n_A           91 EYTLPNPDSAPYGITEGPNGDIWFTEMN-----------------GNRIGRITD-DGKIREYELPNKGSYPSFITLGSDN  152 (299)
T ss_dssp             EEECSSTTCCEEEEEECTTSCEEEEETT-----------------TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTS
T ss_pred             EEeCCCcCCCceeeEECCCCCEEEEecC-----------------CceEEEECC-CCCEEEecCCCCCCCCceEEEcCCC
Confidence            5442  2368999999999999998754                 458999999 56665443  234578999999999


Q ss_pred             CEEEEEeCCCCeEEEEEeCCCCCcceeEe-cccCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccch
Q 018474          202 DFVVVCESWKFRCRRYWLKGDRAGILDAF-IENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGL  280 (355)
Q Consensus       202 ~~l~v~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (355)
                      + +|+++...++|++++.++    +...+ .......|.++++|++|++|+++...                        
T Consensus       153 ~-l~v~~~~~~~i~~~~~~g----~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~------------------------  203 (299)
T 2z2n_A          153 A-LWFTENQNNAIGRITESG----DITEFKIPTPASGPVGITKGNDDALWFVEIIG------------------------  203 (299)
T ss_dssp             C-EEEEETTTTEEEEECTTC----CEEEEECSSTTCCEEEEEECTTSSEEEEETTT------------------------
T ss_pred             C-EEEEeCCCCEEEEEcCCC----cEEEeeCCCCCCcceeEEECCCCCEEEEccCC------------------------
Confidence            7 999988788999998732    22222 11122357889999999999998542                        


Q ss_pred             hhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEe-CCEEEEeecCCCeEEEeeCC
Q 018474          281 ISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-DGNLYLASLQSNFIGILPLD  346 (355)
Q Consensus       281 ~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~~~  346 (355)
                                  ++|.++++ +|+.. .+..+..  ...+..++.+ +|+||+++...+.|.+++..
T Consensus       204 ------------~~i~~~~~-~g~~~-~~~~~~~--~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~  254 (299)
T 2z2n_A          204 ------------NKIGRITT-SGEIT-EFKIPTP--NARPHAITAGAGIDLWFTEWGANKIGRLTSN  254 (299)
T ss_dssp             ------------TEEEEECT-TCCEE-EEECSST--TCCEEEEEECSTTCEEEEETTTTEEEEEETT
T ss_pred             ------------ceEEEECC-CCcEE-EEECCCC--CCCceeEEECCCCCEEEeccCCceEEEECCC
Confidence                        47999999 88854 3544432  3356677765 58999999889999999874

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.86  E-value=7.6e-19  Score=157.28  Aligned_cols=231  Identities=14%  Similarity=0.215  Sum_probs=174.1

Q ss_pred             CCCCceEEEeeCCCeEEEEec-CCEEEEEEcCCCeeEEeecc--CCCcccCeEECCCCCEEEEeCC-CcEEEEcCCC-eE
Q 018474           51 VNHPEDVSVVVSKGALYTATR-DGWVKYFILHNETLVNWKHI--DSQSLLGLTTTKDGGVILCDNE-KGLLKVTEEG-VE  125 (355)
Q Consensus        51 ~~~p~~i~~d~~~g~l~~~~~-~g~i~~~~~~~g~~~~~~~~--~~~p~~gl~~d~~g~L~v~~~~-~gl~~~~~~g-~~  125 (355)
                      ...|.+|+.+ .+|.+|+++. +++|.++++. +++..+...  ...|. ++++|++|++|+++.. +++++++.+| .+
T Consensus        19 ~~~p~~i~~d-~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~-~i~~~~~g~l~v~~~~~~~v~~~d~~g~~~   95 (300)
T 2qc5_A           19 DSGPYGITSS-EDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVM-CLIVSSLGDIWFTENGANKIGKLSKKGGFT   95 (300)
T ss_dssp             TCCEEEEEEC-TTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEE-EEEECTTSCEEEEETTTTEEEEECTTSCEE
T ss_pred             CCCcceeeEC-CCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcce-eEEECCCCCEEEEecCCCeEEEECCCCCeE
Confidence            5799999999 6788999875 6899999996 777665432  25688 9999999999999874 5689998657 55


Q ss_pred             EEcC--CcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee--ccccccccEEEeCCC
Q 018474          126 AIVP--DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH--EGFYFANGIALSKNE  201 (355)
Q Consensus       126 ~~~~--~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~--~~~~~pngi~~~~dg  201 (355)
                      .+..  ....|++++++++|++|+++..                 .+.++++|++ ++...+.  .....|++++++++|
T Consensus        96 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~-----------------~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g  157 (300)
T 2qc5_A           96 EYPLPQPDSGPYGITEGLNGDIWFTQLN-----------------GDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDN  157 (300)
T ss_dssp             EEECSSTTCCEEEEEECSTTCEEEEETT-----------------TTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTS
T ss_pred             EecCCCCCCCCccceECCCCCEEEEccC-----------------CCeEEEECCC-CCEEEccCCCCCCCceeEEECCCC
Confidence            4432  2267999999999999999754                 4589999997 6665442  235678999999999


Q ss_pred             CEEEEEeCCCCeEEEEEeCCCCCcceeEec-ccCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccch
Q 018474          202 DFVVVCESWKFRCRRYWLKGDRAGILDAFI-ENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGL  280 (355)
Q Consensus       202 ~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (355)
                      + +|+++...++|++++.++.    ...+. ......|.++++|++|++|+++...                        
T Consensus       158 ~-l~v~~~~~~~i~~~~~~g~----~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~------------------------  208 (300)
T 2qc5_A          158 A-LWFTENQNNSIGRITNTGK----LEEYPLPTNAAAPVGITSGNDGALWFVEIMG------------------------  208 (300)
T ss_dssp             S-EEEEETTTTEEEEECTTCC----EEEEECSSTTCCEEEEEECTTSSEEEEETTT------------------------
T ss_pred             C-EEEEecCCCeEEEECCCCc----EEEeeCCCCCCCcceEEECCCCCEEEEccCC------------------------
Confidence            8 9999988889999987432    22221 1122358899999999999998642                        


Q ss_pred             hhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEe-CCEEEEeecCCCeEEEeeCCC
Q 018474          281 ISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-DGNLYLASLQSNFIGILPLDG  347 (355)
Q Consensus       281 ~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~~~~  347 (355)
                                  +.|.++++ +|+... +..+.+  ...+..++.+ +|+||+++...+.|.+++...
T Consensus       209 ------------~~i~~~~~-~g~~~~-~~~~~~--~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g  260 (300)
T 2qc5_A          209 ------------NKIGRITT-TGEISE-YDIPTP--NARPHAITAGKNSEIWFTEWGANQIGRITNDN  260 (300)
T ss_dssp             ------------TEEEEECT-TCCEEE-EECSST--TCCEEEEEECSTTCEEEEETTTTEEEEECTTS
T ss_pred             ------------CEEEEEcC-CCcEEE-EECCCC--CCCceEEEECCCCCEEEeccCCCeEEEECCCC
Confidence                        47999999 887654 333332  3356667766 589999999889999998743

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.86  E-value=5.4e-19  Score=158.29  Aligned_cols=228  Identities=15%  Similarity=0.198  Sum_probs=169.9

Q ss_pred             CCCCceEEEeeCCCeEEEEec-CCEEEEEEcCCCeeEEeec--cCCCcccCeEECCCCCEEEEeCC-CcEEEEcCCC-eE
Q 018474           51 VNHPEDVSVVVSKGALYTATR-DGWVKYFILHNETLVNWKH--IDSQSLLGLTTTKDGGVILCDNE-KGLLKVTEEG-VE  125 (355)
Q Consensus        51 ~~~p~~i~~d~~~g~l~~~~~-~g~i~~~~~~~g~~~~~~~--~~~~p~~gl~~d~~g~L~v~~~~-~gl~~~~~~g-~~  125 (355)
                      ...|.+|+++ .++.+|++.. +++|+++++. ++...+..  ....|. ++++|++|++|+++.. +++++++.+| +.
T Consensus        61 ~~~~~~i~~~-~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~-~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~  137 (300)
T 2qc5_A           61 DAKVMCLIVS-SLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPY-GITEGLNGDIWFTQLNGDRIGKLTADGTIY  137 (300)
T ss_dssp             TCCEEEEEEC-TTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEE-EEEECSTTCEEEEETTTTEEEEECTTSCEE
T ss_pred             CCcceeEEEC-CCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCc-cceECCCCCEEEEccCCCeEEEECCCCCEE
Confidence            4689999999 6778999876 6889999996 77665543  235688 9999999999999874 5688998667 55


Q ss_pred             EEcC--CcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee--ccccccccEEEeCCC
Q 018474          126 AIVP--DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH--EGFYFANGIALSKNE  201 (355)
Q Consensus       126 ~~~~--~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~--~~~~~pngi~~~~dg  201 (355)
                      .+..  ....|+++++|++|++|+++..                 .+.+++||+ ++++..+.  .....|.+++++++|
T Consensus       138 ~~~~~~~~~~~~~i~~d~~g~l~v~~~~-----------------~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g  199 (300)
T 2qc5_A          138 EYDLPNKGSYPAFITLGSDNALWFTENQ-----------------NNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDG  199 (300)
T ss_dssp             EEECSSTTCCEEEEEECTTSSEEEEETT-----------------TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTS
T ss_pred             EccCCCCCCCceeEEECCCCCEEEEecC-----------------CCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCC
Confidence            4422  2368999999999999999764                 457999998 56665443  234578999999999


Q ss_pred             CEEEEEeCCCCeEEEEEeCCCCCcceeEe-cccCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccch
Q 018474          202 DFVVVCESWKFRCRRYWLKGDRAGILDAF-IENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGL  280 (355)
Q Consensus       202 ~~l~v~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (355)
                      + +|+++...++|.+++.++.    ...+ .......|.++++|++|++|+++...                        
T Consensus       200 ~-l~v~~~~~~~i~~~~~~g~----~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~------------------------  250 (300)
T 2qc5_A          200 A-LWFVEIMGNKIGRITTTGE----ISEYDIPTPNARPHAITAGKNSEIWFTEWGA------------------------  250 (300)
T ss_dssp             S-EEEEETTTTEEEEECTTCC----EEEEECSSTTCCEEEEEECSTTCEEEEETTT------------------------
T ss_pred             C-EEEEccCCCEEEEEcCCCc----EEEEECCCCCCCceEEEECCCCCEEEeccCC------------------------
Confidence            7 9999988889999987432    2222 11112357889999999999998541                        


Q ss_pred             hhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEe-CCEEEEeecCCCeEEEeeCC
Q 018474          281 ISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-DGNLYLASLQSNFIGILPLD  346 (355)
Q Consensus       281 ~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~~~  346 (355)
                                  ++|.+|++ +|+.. .+..+.+  ...+.+++.+ +|+||+++. + .|.+++..
T Consensus       251 ------------~~i~~~~~-~g~~~-~~~~~~~--~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~  299 (300)
T 2qc5_A          251 ------------NQIGRITN-DNTIQ-EYQLQTE--NAEPHGITFGKDGSVWFALK-C-KIGKLNLN  299 (300)
T ss_dssp             ------------TEEEEECT-TSCEE-EEECCST--TCCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred             ------------CeEEEECC-CCcEE-EEECCcc--CCccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence                        47999999 88754 5555433  2345566665 599999998 6 99998754

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.86  E-value=7.7e-19  Score=157.19  Aligned_cols=231  Identities=14%  Similarity=0.189  Sum_probs=170.9

Q ss_pred             CCCCceEEEeeCCCeEEEEec-CCEEEEEEcCCCeeEEeec--cCCCcccCeEECCCCCEEEEeCC-CcEEEEcCCC-eE
Q 018474           51 VNHPEDVSVVVSKGALYTATR-DGWVKYFILHNETLVNWKH--IDSQSLLGLTTTKDGGVILCDNE-KGLLKVTEEG-VE  125 (355)
Q Consensus        51 ~~~p~~i~~d~~~g~l~~~~~-~g~i~~~~~~~g~~~~~~~--~~~~p~~gl~~d~~g~L~v~~~~-~gl~~~~~~g-~~  125 (355)
                      ...|.+|+++ .+|.+|++.. +++|+++++. ++...+..  ....|. ++++|++|+||+++.. ++++++++++ ..
T Consensus        56 ~~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~-~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~  132 (299)
T 2z2n_A           56 DAKVMCLTIS-SDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPY-GITEGPNGDIWFTEMNGNRIGRITDDGKIR  132 (299)
T ss_dssp             TCCEEEEEEC-TTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEE-EEEECTTSCEEEEETTTTEEEEECTTCCEE
T ss_pred             cCceeeEEEC-CCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCce-eeEECCCCCEEEEecCCceEEEECCCCCEE
Confidence            4679999999 6778998876 6889999984 66665542  245688 9999999999999864 5688998766 55


Q ss_pred             EEcC--CcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEe--eccccccccEEEeCCC
Q 018474          126 AIVP--DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL--HEGFYFANGIALSKNE  201 (355)
Q Consensus       126 ~~~~--~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~--~~~~~~pngi~~~~dg  201 (355)
                      .+..  ....|++++++++|++|+++..                 .+.++++|+ ++++..+  ......|.+++++++|
T Consensus       133 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~-----------------~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g  194 (299)
T 2z2n_A          133 EYELPNKGSYPSFITLGSDNALWFTENQ-----------------NNAIGRITE-SGDITEFKIPTPASGPVGITKGNDD  194 (299)
T ss_dssp             EEECSSTTCCEEEEEECTTSCEEEEETT-----------------TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTS
T ss_pred             EecCCCCCCCCceEEEcCCCCEEEEeCC-----------------CCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCC
Confidence            4432  2367999999999999998754                 468999999 6776654  2235678999999999


Q ss_pred             CEEEEEeCCCCeEEEEEeCCCCCcceeEe-cccCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccch
Q 018474          202 DFVVVCESWKFRCRRYWLKGDRAGILDAF-IENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGL  280 (355)
Q Consensus       202 ~~l~v~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (355)
                      + +|+++...++|.+++.++ .   ...+ .......|.++++|++|++|+++...                        
T Consensus       195 ~-l~v~~~~~~~i~~~~~~g-~---~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~------------------------  245 (299)
T 2z2n_A          195 A-LWFVEIIGNKIGRITTSG-E---ITEFKIPTPNARPHAITAGAGIDLWFTEWGA------------------------  245 (299)
T ss_dssp             S-EEEEETTTTEEEEECTTC-C---EEEEECSSTTCCEEEEEECSTTCEEEEETTT------------------------
T ss_pred             C-EEEEccCCceEEEECCCC-c---EEEEECCCCCCCceeEEECCCCCEEEeccCC------------------------
Confidence            8 899998788999998732 2   2222 11122458889999999999998441                        


Q ss_pred             hhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeCCEEEEeecCCCeEEEeeCCCC
Q 018474          281 ISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLDGP  348 (355)
Q Consensus       281 ~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~~~  348 (355)
                                  ++|.++++ +|+ +..+..+.+  ...+..+...+|+||+++. .+.|.+++..+.
T Consensus       246 ------------~~i~~~d~-~g~-~~~~~~~~~--~~~~~~i~~~~g~l~v~~~-~~~l~~~~~~~~  296 (299)
T 2z2n_A          246 ------------NKIGRLTS-NNI-IEEYPIQIK--SAEPHGICFDGETIWFAME-CDKIGKLTLIKD  296 (299)
T ss_dssp             ------------TEEEEEET-TTE-EEEEECSSS--SCCEEEEEECSSCEEEEET-TTEEEEEEEC--
T ss_pred             ------------ceEEEECC-CCc-eEEEeCCCC--CCccceEEecCCCEEEEec-CCcEEEEEcCcc
Confidence                        47999999 886 455654433  2345555556699999987 789999987654

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.84  E-value=8.7e-18  Score=158.66  Aligned_cols=235  Identities=15%  Similarity=0.122  Sum_probs=172.7

Q ss_pred             CCCCCceEEEeeCCCeEEEEec-CCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCCC--cEEEEcC-CC-
Q 018474           50 CVNHPEDVSVVVSKGALYTATR-DGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEK--GLLKVTE-EG-  123 (355)
Q Consensus        50 ~~~~p~~i~~d~~~g~l~~~~~-~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~~--gl~~~~~-~g-  123 (355)
                      .+..|.+|+++ .++.||++.. +++|+++++++++...+......+.  ++++++|+ ||+++..+  .+++++. .+ 
T Consensus       129 ~~~~P~~la~d-~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~--ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~  205 (409)
T 3hrp_A          129 KFKYMWGIAAV-GNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK--PAVTKDKQRVYSIGWEGTHTVYVYMKASGW  205 (409)
T ss_dssp             CCCCEEEEEEC-STTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB--CEECTTSSEEEEEBSSTTCEEEEEEGGGTT
T ss_pred             ccCCceEEEEe-CCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc--eeEecCCCcEEEEecCCCceEEEEEcCCCc
Confidence            47899999999 6777888765 5899999998888877765544443  88998886 78887654  6888885 34 


Q ss_pred             -eEEE----cCCcCCcccEEEcc-CCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEe----eccc--cc
Q 018474          124 -VEAI----VPDASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL----HEGF--YF  191 (355)
Q Consensus       124 -~~~~----~~~~~~~~~l~~d~-dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~----~~~~--~~  191 (355)
                       .+.+    ......|+++++++ +|.||+++.                  .+.+++||++++....+    ..+.  ..
T Consensus       206 ~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~------------------~~~I~~~d~~~~~~~~~~~~~~~g~~~~~  267 (409)
T 3hrp_A          206 APTRIGQLGSTFSGKIGAVALDETEEWLYFVDS------------------NKNFGRFNVKTQEVTLIKQLELSGSLGTN  267 (409)
T ss_dssp             CEEEEEECCTTSCSCCCBCEECTTSSEEEEECT------------------TCEEEEEETTTCCEEEEEECCCCSCCCCS
T ss_pred             eeEEeeeccchhcCCcEEEEEeCCCCeEEEEEC------------------CCcEEEEECCCCCEEEEecccccCCCCCC
Confidence             3344    21337899999999 789999753                  35799999988876655    2222  22


Q ss_pred             cc-cEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccC--------------CCCcCceEECCCCCEEEEee-c
Q 018474          192 AN-GIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENL--------------PGGPDNINLAPDGSFWIGLI-K  255 (355)
Q Consensus       192 pn-gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~--------------~g~p~~i~~d~~G~lwv~~~-~  255 (355)
                      |. +++++|++..+|+++...++|++++.++.    ...+....              -..|.++++|++|++||+.. .
T Consensus       268 P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~----~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~  343 (409)
T 3hrp_A          268 PGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE----CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFK  343 (409)
T ss_dssp             SCCEEEEETTTTEEEEEETTTTEEEEECTTCC----EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTT
T ss_pred             ccccEEEeCCCCEEEEEeCCCCEEEEEecCCC----EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCC
Confidence            44 99999977789999999999999997653    22222111              12489999999999999986 4


Q ss_pred             CCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEe-CCCCeEEEEEECC------CC----CcccceeEEE
Q 018474          256 MNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVD-GNDGKIIRDFNDP------DA----TYISFVTSAA  324 (355)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~g~~~~~~~~~------~g----~~~~~~~~~~  324 (355)
                      .                                    ..|.+++ + +|+.......+      +|    ..+..+.+++
T Consensus       344 ~------------------------------------~~I~~~~~~-~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~gia  386 (409)
T 3hrp_A          344 G------------------------------------YCLRKLDIL-DGYVSTVAGQVDVASQIDGTPLEATFNYPYDIC  386 (409)
T ss_dssp             T------------------------------------CEEEEEETT-TTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEE
T ss_pred             C------------------------------------CEEEEEECC-CCEEEEEeCCCCCCCcCCCChhceEeCCceEEE
Confidence            2                                    4799999 6 88865544331      11    1245677888


Q ss_pred             EeC-CEEEEeecCCCeEEEeeCC
Q 018474          325 EFD-GNLYLASLQSNFIGILPLD  346 (355)
Q Consensus       325 ~~~-g~L~v~~~~~~~i~~~~~~  346 (355)
                      .+. |+||++...+++|.++.+.
T Consensus       387 vd~~g~lyVad~~n~~Ir~i~~e  409 (409)
T 3hrp_A          387 YDGEGGYWIAEAWGKAIRKYAVE  409 (409)
T ss_dssp             ECSSSEEEEEESTTCEEEEEEEC
T ss_pred             EcCCCCEEEEECCCCeEEEEEeC
Confidence            765 9999999999999998763

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.83  E-value=1.8e-18  Score=158.36  Aligned_cols=242  Identities=16%  Similarity=0.172  Sum_probs=169.4

Q ss_pred             CCCCCceEEEeeCCCeEEEEecCC-------------------------EEEEEEcCCCeeEEeecc--CCCcccCeEEC
Q 018474           50 CVNHPEDVSVVVSKGALYTATRDG-------------------------WVKYFILHNETLVNWKHI--DSQSLLGLTTT  102 (355)
Q Consensus        50 ~~~~p~~i~~d~~~g~l~~~~~~g-------------------------~i~~~~~~~g~~~~~~~~--~~~p~~gl~~d  102 (355)
                      .+..|.+++++ .+|.+|++...+                         .|+++|+.+|+.......  ...|. ++++|
T Consensus        22 ~l~~v~~va~d-~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~-gia~d   99 (329)
T 3fvz_A           22 LPGQVSGVALD-SKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPH-GLSID   99 (329)
T ss_dssp             CCSCEEEEEEC-TTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEE-EEEEC
T ss_pred             ecCCceEEEEC-CCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCce-EEEEC
Confidence            46789999999 667888876644                         699999988877543322  24699 99999


Q ss_pred             CCCCEEEEeCCC-cEEEEcCCC----eEEEcC---------CcCCcccEEEcc-CCcEEEEeC-CCCCCCcccccccccc
Q 018474          103 KDGGVILCDNEK-GLLKVTEEG----VEAIVP---------DASFTNDVIAAS-DGTLYFTVA-STKYTPTDFYKDMAEG  166 (355)
Q Consensus       103 ~~g~L~v~~~~~-gl~~~~~~g----~~~~~~---------~~~~~~~l~~d~-dG~ly~~d~-~~~~~~~~~~~~~~~~  166 (355)
                      ++|+|||++... .+++++.+|    +..+..         ....|+++++++ +|++|++++ .               
T Consensus       100 ~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~---------------  164 (329)
T 3fvz_A          100 TDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYC---------------  164 (329)
T ss_dssp             TTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSS---------------
T ss_pred             CCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCC---------------
Confidence            999999999764 577888644    334421         125799999999 899999985 3               


Q ss_pred             CCCCeEEEEeCCCCeEEEeec----------cccccccEEEeCCCCEEEEEeCCCCeEEEEEeC-CCCCcceeEec-ccC
Q 018474          167 KPYGQLRKYDPKLKETTVLHE----------GFYFANGIALSKNEDFVVVCESWKFRCRRYWLK-GDRAGILDAFI-ENL  234 (355)
Q Consensus       167 ~~~g~l~~~dp~~~~~~~~~~----------~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~-~~~~~~~~~~~-~~~  234 (355)
                        .+++.+||+++.....+..          .+..|+++++++++..+|+++...++|.+|+.+ |...   ..+. ...
T Consensus       165 --~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~---~~~~~~~~  239 (329)
T 3fvz_A          165 --NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFV---REIKHASF  239 (329)
T ss_dssp             --CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE---EEECCTTT
T ss_pred             --CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEE---EEEecccc
Confidence              4579999976544444421          234599999999966799999999999999986 3211   1121 111


Q ss_pred             CCCcCceEECC------CCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEE
Q 018474          235 PGGPDNINLAP------DGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRD  308 (355)
Q Consensus       235 ~g~p~~i~~d~------~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~  308 (355)
                      ...+.++.+.+      +|++|++...                                    ...|..++.++|+.+..
T Consensus       240 ~~~~~~~~~~pg~~~~~~g~~~v~~~~------------------------------------~~~v~~~~~~~g~~~~~  283 (329)
T 3fvz_A          240 GRNVFAISYIPGFLFAVNGKPYFGDQE------------------------------------PVQGFVMNFSSGEIIDV  283 (329)
T ss_dssp             TTCEEEEEEETTEEEEEECCCCTTCSC------------------------------------CCCEEEEETTTCCEEEE
T ss_pred             CCCcceeeecCCEEEEeCCCEEeccCC------------------------------------CcEEEEEEcCCCeEEEE
Confidence            12234444544      4444443322                                    24688899658998888


Q ss_pred             EECCCCCcccceeEEEEe-CCEEEEeecCCCeEEEeeCCCCCC
Q 018474          309 FNDPDATYISFVTSAAEF-DGNLYLASLQSNFIGILPLDGPEP  350 (355)
Q Consensus       309 ~~~~~g~~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~~~~~~~  350 (355)
                      +....+. ...+.+++.+ +|+||+++..+++|.++++.....
T Consensus       284 ~~~~~~~-~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~~~  325 (329)
T 3fvz_A          284 FKPVRKH-FDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEKME  325 (329)
T ss_dssp             ECCSSSC-CSSEEEEEECTTSEEEEEESSSCCEEEEEEEECSS
T ss_pred             EcCCCCc-cCCeeEEEECCCCCEEEEECCCCEEEEEeCCcccc
Confidence            8532222 4567777776 489999999999999999876543

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.82  E-value=3.6e-18  Score=157.45  Aligned_cols=237  Identities=17%  Similarity=0.202  Sum_probs=163.7

Q ss_pred             eEecCCCCCCCceEEEeeCCCeEEEEec---CC--EEEEEEcCCCeeEEeec-------cCCCcccCeEECCCCCEEEEe
Q 018474           44 TKLGEGCVNHPEDVSVVVSKGALYTATR---DG--WVKYFILHNETLVNWKH-------IDSQSLLGLTTTKDGGVILCD  111 (355)
Q Consensus        44 ~~~~~~~~~~p~~i~~d~~~g~l~~~~~---~g--~i~~~~~~~g~~~~~~~-------~~~~p~~gl~~d~~g~L~v~~  111 (355)
                      +.+.... ..|++++++ .+|.+|++..   ++  +|..++  +++...|..       ....|+ ++++|++|+|||++
T Consensus        10 ~~v~~~~-~~p~~va~~-~~g~~~v~~~~~~~~~~~l~~~~--~g~~~~~p~~~~~~~~~~~~p~-gv~~d~~g~L~v~D   84 (343)
T 2qe8_A           10 EVVAELS-LAPGNITLT-PDGRLFLSLHQFYQPEMQVAELT--QDGLIPFPPQSGNAIITFDTVL-GIKSDGNGIVWMLD   84 (343)
T ss_dssp             EEEEEES-SCEEEEEEC-TTSCEEEEECGGGCCSCSEEEEE--TTEEEESCCCCSSCCCCCSCEE-EEEECSSSEEEEEE
T ss_pred             EEEEEcC-CCcceEEEC-CCCCEEEEeCCCCCCceEEEEEC--CCCeecCCCcccCcccceeEee-EEEEcCCCcEEEEc
Confidence            4444332 689999999 6778888753   34  788888  677665531       124689 99999999999999


Q ss_pred             CC------CcEEEEcC-CC--eEEEcCC------cCCcccEEEcc-CCcEEEEeCCCCCCCccccccccccCCCCeEEEE
Q 018474          112 NE------KGLLKVTE-EG--VEAIVPD------ASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKY  175 (355)
Q Consensus       112 ~~------~gl~~~~~-~g--~~~~~~~------~~~~~~l~~d~-dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~  175 (355)
                      ..      ..|++++. +|  ++.+...      ..+++++++|+ +|.+|++|.+.              ...+++++|
T Consensus        85 ~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~--------------~~~~~i~v~  150 (343)
T 2qe8_A           85 NGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAP--------------DDKAALIRV  150 (343)
T ss_dssp             CHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCS--------------GGGCEEEEE
T ss_pred             CCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCcc--------------CCCCeEEEE
Confidence            64      57999994 66  4444321      15789999997 47999998731              013467777


Q ss_pred             eCCCCeEEEeecc------------------------------ccccccEEEeCCCCEEEEEeCCCCeEEEEEeC---CC
Q 018474          176 DPKLKETTVLHEG------------------------------FYFANGIALSKNEDFVVVCESWKFRCRRYWLK---GD  222 (355)
Q Consensus       176 dp~~~~~~~~~~~------------------------------~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~---~~  222 (355)
                      |+++++......+                              ...+|||++++||+.||+++....+|++++.+   ..
T Consensus       151 d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~  230 (343)
T 2qe8_A          151 DLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNL  230 (343)
T ss_dssp             ETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCT
T ss_pred             ECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCC
Confidence            7766654433211                              02479999999999999999988899999853   11


Q ss_pred             CCcce------eEecccCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEE
Q 018474          223 RAGIL------DAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVV  296 (355)
Q Consensus       223 ~~~~~------~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  296 (355)
                      .....      ...  ...+.|+++++|++|++|++....                                    +.|.
T Consensus       231 ~~~~~~~~~~~~~~--g~~g~pdgia~d~~G~l~va~~~~------------------------------------~~V~  272 (343)
T 2qe8_A          231 QLTDAELGSKIERY--SEKPICDGISIDKDHNIYVGDLAH------------------------------------SAIG  272 (343)
T ss_dssp             TCCHHHHHTTCEEE--EECCSCSCEEECTTCCEEEEEGGG------------------------------------TEEE
T ss_pred             CCChhhhhcceEec--ccCCCCceEEECCCCCEEEEccCC------------------------------------CeEE
Confidence            11111      111  123479999999999999998652                                    4799


Q ss_pred             EEeCCCCeEEEEEECCCCCcccceeEEEEe-CCEEEEeecCCCeE
Q 018474          297 KVDGNDGKIIRDFNDPDATYISFVTSAAEF-DGNLYLASLQSNFI  340 (355)
Q Consensus       297 ~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~v~~~~~~~i  340 (355)
                      ++|+++|+.......+.   ...+++++.+ +|+||+.+...+++
T Consensus       273 ~~d~~~G~~~~~~~~~~---~~~p~~va~~~~g~l~v~~~~~~~~  314 (343)
T 2qe8_A          273 VITSADRAYKLLVTDEK---LSWTDSFNFGSDGYLYFDCNQLHHS  314 (343)
T ss_dssp             EEETTTTEEEEEEECGG---GSCEEEEEECTTSCEEEEECCGGGS
T ss_pred             EEECCCCCEEEEEECCc---eecCCeeEECCCCcEEEEeCccccc
Confidence            99985677655555442   3467777775 58999998755444

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.81  E-value=1.4e-17  Score=158.71  Aligned_cols=246  Identities=14%  Similarity=0.115  Sum_probs=179.2

Q ss_pred             CCCCCCCceEEEee-CCCeEEEEec-CCEEEEEEcCCCeeEEeeccC----CCcccCeEE-------CCCCC-EEEEeCC
Q 018474           48 EGCVNHPEDVSVVV-SKGALYTATR-DGWVKYFILHNETLVNWKHID----SQSLLGLTT-------TKDGG-VILCDNE  113 (355)
Q Consensus        48 ~~~~~~p~~i~~d~-~~g~l~~~~~-~g~i~~~~~~~g~~~~~~~~~----~~p~~gl~~-------d~~g~-L~v~~~~  113 (355)
                      ...+..|.+|++|| +++.||++.. .++|.++|++++.+..+...+    .+|. +|++       |++|+ ||+++..
T Consensus       135 ~~~~~~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~-~ia~~~~~~~~d~~G~~lyvad~~  213 (496)
T 3kya_A          135 CCGFSDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIR-SIAFNKKIEGYADEAEYMIVAIDY  213 (496)
T ss_dssp             CBCCCSEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEE-EEEECCCBTTTBCTTCEEEEEECC
T ss_pred             ccccCCCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCc-EEEEeecccccCCCCCEEEEEeCC
Confidence            44567899999997 3788999876 478999999888888765432    3588 9999       99987 9999876


Q ss_pred             C-------cEEEEcC--CC-e------EEEcCCcCCcccEEEcc-CCcEEEEeCCCCCCCccccccccccCCCCeEEEEe
Q 018474          114 K-------GLLKVTE--EG-V------EAIVPDASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYD  176 (355)
Q Consensus       114 ~-------gl~~~~~--~g-~------~~~~~~~~~~~~l~~d~-dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~d  176 (355)
                      .       .++.+++  +| +      ..+. ....|+++++++ +|.||+++..                 .+.+++||
T Consensus       214 ~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~-~~~~p~giavdp~~g~LYvtd~~-----------------~g~V~r~d  275 (496)
T 3kya_A          214 DGKGDESPSVYIIKRNADGTFDDRSDIQLIA-AYKQCNGATIHPINGELYFNSYE-----------------KGQVFRLD  275 (496)
T ss_dssp             CTTGGGEEEEEEEECCTTSCCSTTSCEEEEE-EESCCCCEEECTTTCCEEEEETT-----------------TTEEEEEC
T ss_pred             CCCcccCceEEEEecCCCCceeecccceeec-cCCCceEEEEcCCCCeEEEEECC-----------------CCEEEEEe
Confidence            4       2677752  35 3      2343 237899999999 6799999865                 56899999


Q ss_pred             CC-------CCeE------------EEe-e-ccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCC--CcceeEeccc
Q 018474          177 PK-------LKET------------TVL-H-EGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDR--AGILDAFIEN  233 (355)
Q Consensus       177 p~-------~~~~------------~~~-~-~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~--~~~~~~~~~~  233 (355)
                      ++       +++.            +.+ . .....|.+|+++|+|+.+|++++..++|++++.++..  ......++..
T Consensus       276 ~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~  355 (496)
T 3kya_A          276 LVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGG  355 (496)
T ss_dssp             HHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEB
T ss_pred             cccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCC
Confidence            87       5553            122 1 2235688999999999999999999999999886532  1112233321


Q ss_pred             --CCC------------CcC-ceEEC-------CCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCC
Q 018474          234 --LPG------------GPD-NINLA-------PDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDA  291 (355)
Q Consensus       234 --~~g------------~p~-~i~~d-------~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (355)
                        ..|            .|. +++.|       .+|+|||++...                                   
T Consensus       356 ~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N-----------------------------------  400 (496)
T 3kya_A          356 YKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLN-----------------------------------  400 (496)
T ss_dssp             TTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGG-----------------------------------
T ss_pred             CCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCC-----------------------------------
Confidence              111            366 67776       678999999762                                   


Q ss_pred             ceEEEEEeCCCCeEEEEEECC--------------CC-----CcccceeEEEEeC--CEEEEeecCCCeEEEeeCCCCC
Q 018474          292 GARVVKVDGNDGKIIRDFNDP--------------DA-----TYISFVTSAAEFD--GNLYLASLQSNFIGILPLDGPE  349 (355)
Q Consensus       292 ~~~v~~~~~~~g~~~~~~~~~--------------~g-----~~~~~~~~~~~~~--g~L~v~~~~~~~i~~~~~~~~~  349 (355)
                       ..|.+|++ +|.+.......              +|     ..++.+++++.+.  |+|||++..+.+|.++.+....
T Consensus       401 -~rIr~i~~-~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~  477 (496)
T 3kya_A          401 -FCVRKVTP-EGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEE  477 (496)
T ss_dssp             -TEEEEECT-TCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC
T ss_pred             -CEEEEEeC-CCCEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCc
Confidence             47999999 99765554321              22     1255677888763  8999999999999999987653

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.80  E-value=3.3e-17  Score=145.42  Aligned_cols=204  Identities=10%  Similarity=0.078  Sum_probs=152.2

Q ss_pred             CCCCceEEEeeCCCeEEEEec-CCEEEEEEcCCCeeEEeecc-CCCcccCeEECCC-CCEEEEeCCC-cEEEEcCCC--e
Q 018474           51 VNHPEDVSVVVSKGALYTATR-DGWVKYFILHNETLVNWKHI-DSQSLLGLTTTKD-GGVILCDNEK-GLLKVTEEG--V  124 (355)
Q Consensus        51 ~~~p~~i~~d~~~g~l~~~~~-~g~i~~~~~~~g~~~~~~~~-~~~p~~gl~~d~~-g~L~v~~~~~-gl~~~~~~g--~  124 (355)
                      ...|+++++|+.++.||++.. ++.|+++++.++....+... ...|. ++++|++ ++||+++... .+.+++.+|  .
T Consensus        35 ~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~-~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~  113 (267)
T 1npe_A           35 AKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPE-GIALDHLGRTIFWTDSQLDRIEVAKMDGTQR  113 (267)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEE-EEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCcc-EEEEEecCCeEEEEECCCCEEEEEEcCCCCE
Confidence            367999999976888998765 68999999965554444333 25799 9999974 7899999764 577777655  4


Q ss_pred             EEEcC-CcCCcccEEEcc-CCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee-ccccccccEEEeCCC
Q 018474          125 EAIVP-DASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFYFANGIALSKNE  201 (355)
Q Consensus       125 ~~~~~-~~~~~~~l~~d~-dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~-~~~~~pngi~~~~dg  201 (355)
                      +.+.. ....|+++++|+ +|+||+++..               ...+.++++++++...+.+. ..+..|+|+++++++
T Consensus       114 ~~~~~~~~~~P~~i~vd~~~g~lyv~~~~---------------~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~  178 (267)
T 1npe_A          114 RVLFDTGLVNPRGIVTDPVRGNLYWTDWN---------------RDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFS  178 (267)
T ss_dssp             EEEECSSCSSEEEEEEETTTTEEEEEECC---------------SSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTT
T ss_pred             EEEEECCCCCccEEEEeeCCCEEEEEECC---------------CCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCC
Confidence            44433 337899999999 5799999854               11457889988655544443 456789999999999


Q ss_pred             CEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchh
Q 018474          202 DFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLI  281 (355)
Q Consensus       202 ~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (355)
                      +.+||++...++|.++++++.   ..+.+.+. ...|++++.| +|++|++....                         
T Consensus       179 ~~lyv~d~~~~~I~~~~~~g~---~~~~~~~~-~~~P~gi~~d-~~~lyva~~~~-------------------------  228 (267)
T 1npe_A          179 SQLCWVDAGTHRAECLNPAQP---GRRKVLEG-LQYPFAVTSY-GKNLYYTDWKT-------------------------  228 (267)
T ss_dssp             TEEEEEETTTTEEEEEETTEE---EEEEEEEC-CCSEEEEEEE-TTEEEEEETTT-------------------------
T ss_pred             CEEEEEECCCCEEEEEecCCC---ceEEEecC-CCCceEEEEe-CCEEEEEECCC-------------------------
Confidence            899999999999999998653   22333332 3468999998 58899988652                         


Q ss_pred             hcccCCCCCCceEEEEEeCCCCeEEEEEEC
Q 018474          282 SLLLPMGSDAGARVVKVDGNDGKIIRDFND  311 (355)
Q Consensus       282 ~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~  311 (355)
                                 +.|.++++++|+....+..
T Consensus       229 -----------~~v~~~d~~~g~~~~~i~~  247 (267)
T 1npe_A          229 -----------NSVIAMDLAISKEMDTFHP  247 (267)
T ss_dssp             -----------TEEEEEETTTTEEEEEECC
T ss_pred             -----------CeEEEEeCCCCCceEEEcc
Confidence                       4799999966888888754

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.79  E-value=1.2e-16  Score=147.57  Aligned_cols=228  Identities=13%  Similarity=0.101  Sum_probs=168.0

Q ss_pred             CceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEEC-CCCCEEEEeCCC-cEEEEcCCC--eEEE-c
Q 018474           54 PEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTT-KDGGVILCDNEK-GLLKVTEEG--VEAI-V  128 (355)
Q Consensus        54 p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d-~~g~L~v~~~~~-gl~~~~~~g--~~~~-~  128 (355)
                      -.+.+.+ ....|+++.. ..|.++++..............|. ++++| .+++||+++... .|++++.+|  .+.+ .
T Consensus        36 ~~C~~~~-~~~~ll~~~~-~~I~~i~~~g~~~~~~~~~~~~~~-~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~  112 (349)
T 3v64_C           36 RSCKALG-PEPVLLFANR-IDIRQVLPHRSEYTLLLNNLENAI-ALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS  112 (349)
T ss_dssp             SCEEESS-SCCEEEEECB-SCEEEECTTSCCEEEEECSCSCEE-EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred             Ccccccc-cCceeEeecc-cceEEEeCCCCeeEEeecCCCceE-EEEEeccccEEEEEeccCCceEEEecCCCCceEEEe
Confidence            3455555 4667777765 459999996666666555556789 99999 578899999764 588888654  4444 3


Q ss_pred             CCcCCcccEEEcc-CCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee-ccccccccEEEeCCCCEEEE
Q 018474          129 PDASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFYFANGIALSKNEDFVVV  206 (355)
Q Consensus       129 ~~~~~~~~l~~d~-dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~-~~~~~pngi~~~~dg~~l~v  206 (355)
                      .....|.++++|+ +|+||++|..                 .+.|.++++++...+.+. ..+..|++++++|++..+||
T Consensus       113 ~~~~~p~glavd~~~g~ly~~d~~-----------------~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~  175 (349)
T 3v64_C          113 TGLESPGGLAVDWVHDKLYWTDSG-----------------TSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYW  175 (349)
T ss_dssp             SSCSCCCEEEEETTTTEEEEEETT-----------------TTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEE
T ss_pred             CCCCCccEEEEecCCCeEEEEcCC-----------------CCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEE
Confidence            3447899999996 6799999876                 458999998766544444 56788999999998888999


Q ss_pred             EeCCC-CeEEEEEeCCCCCcceeEecccCCCCcCceEECC-CCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcc
Q 018474          207 CESWK-FRCRRYWLKGDRAGILDAFIENLPGGPDNINLAP-DGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLL  284 (355)
Q Consensus       207 ~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~-~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (355)
                      ++... ++|++++.+|..   .+.+....-..|+++++|. +|+||++....                            
T Consensus       176 td~~~~~~I~r~~~dG~~---~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~----------------------------  224 (349)
T 3v64_C          176 TDWGNTPRIEASSMDGSG---RRIIADTHLFWPNGLTIDYAGRRMYWVDAKH----------------------------  224 (349)
T ss_dssp             EECSSSCEEEEEETTSCS---CEESCCSSCSCEEEEEEETTTTEEEEEETTT----------------------------
T ss_pred             eccCCCCEEEEEeCCCCC---cEEEEECCCCCcceEEEeCCCCEEEEEECCC----------------------------
Confidence            99987 899999987642   2223322234699999994 67899998652                            


Q ss_pred             cCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeCCEEEEeecCCCeEEEee
Q 018474          285 LPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILP  344 (355)
Q Consensus       285 ~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~  344 (355)
                              +.|.+++. +|...+.+....   ...+.+++..+++||+++..+++|.+++
T Consensus       225 --------~~I~~~~~-dG~~~~~~~~~~---~~~P~giav~~~~ly~td~~~~~V~~~~  272 (349)
T 3v64_C          225 --------HVIERANL-DGSHRKAVISQG---LPHPFAITVFEDSLYWTDWHTKSINSAN  272 (349)
T ss_dssp             --------TEEEEEET-TSCSCEEEECSS---CSSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred             --------CEEEEEeC-CCCceEEEEeCC---CCCceEEEEECCEEEEecCCCCeEEEEE
Confidence                    46999998 776444443322   3356667778899999999999999997

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.79  E-value=3.2e-17  Score=151.55  Aligned_cols=184  Identities=10%  Similarity=0.106  Sum_probs=140.1

Q ss_pred             CCCCceEEEeeCCCeEEEEe-cCCEEEEEEcCCCeeEEeecc-CCCcccCeEECC-CCCEEEEeCCC-cEEEEcCCC--e
Q 018474           51 VNHPEDVSVVVSKGALYTAT-RDGWVKYFILHNETLVNWKHI-DSQSLLGLTTTK-DGGVILCDNEK-GLLKVTEEG--V  124 (355)
Q Consensus        51 ~~~p~~i~~d~~~g~l~~~~-~~g~i~~~~~~~g~~~~~~~~-~~~p~~gl~~d~-~g~L~v~~~~~-gl~~~~~~g--~  124 (355)
                      +..|+++++|+.++.||++. .+++|+++++.++..+.+... ...|. |+++|. .|+||+++... .|.+++.+|  .
T Consensus        72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~-glavd~~~g~ly~~d~~~~~I~~~~~dG~~~  150 (349)
T 3v64_C           72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPG-GLAVDWVHDKLYWTDSGTSRIEVANLDGAHR  150 (349)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCC-EEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCcc-EEEEecCCCeEEEEcCCCCeEEEEcCCCCce
Confidence            67899999997788888765 578999999966555544332 35688 999995 67899999764 577777666  4


Q ss_pred             EEEc-CCcCCcccEEEcc-CCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee-ccccccccEEEeCCC
Q 018474          125 EAIV-PDASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFYFANGIALSKNE  201 (355)
Q Consensus       125 ~~~~-~~~~~~~~l~~d~-dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~-~~~~~pngi~~~~dg  201 (355)
                      +.+. .....|+++++|+ +|.||++|...                .+.|+++++++...+.+. .++..||||++++++
T Consensus       151 ~~l~~~~l~~P~~iavdp~~g~ly~td~~~----------------~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~  214 (349)
T 3v64_C          151 KVLLWQSLEKPRAIALHPMEGTIYWTDWGN----------------TPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAG  214 (349)
T ss_dssp             EEEECTTCSCEEEEEEETTTTEEEEEECSS----------------SCEEEEEETTSCSCEESCCSSCSCEEEEEEETTT
T ss_pred             EEEEeCCCCCcceEEEecCcCeEEEeccCC----------------CCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCC
Confidence            4443 3447899999997 67999998651                268999998766555553 467889999999988


Q ss_pred             CEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474          202 DFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       202 ~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      +.|||+++..++|.+++++|..   .+.+.......|++++++ +|++|++...
T Consensus       215 ~~lY~aD~~~~~I~~~~~dG~~---~~~~~~~~~~~P~giav~-~~~ly~td~~  264 (349)
T 3v64_C          215 RRMYWVDAKHHVIERANLDGSH---RKAVISQGLPHPFAITVF-EDSLYWTDWH  264 (349)
T ss_dssp             TEEEEEETTTTEEEEEETTSCS---CEEEECSSCSSEEEEEEE-TTEEEEEETT
T ss_pred             CEEEEEECCCCEEEEEeCCCCc---eEEEEeCCCCCceEEEEE-CCEEEEecCC
Confidence            8999999999999999997632   233333333579999995 5789999865

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.79  E-value=6.8e-17  Score=147.96  Aligned_cols=213  Identities=11%  Similarity=0.101  Sum_probs=153.2

Q ss_pred             CCCCceEEEeeCCCeEEEEe-cCCEEEEEEcCCCeeEEeeccCC------CcccCeEECCCCCEEEEeC--CCcEEEEcC
Q 018474           51 VNHPEDVSVVVSKGALYTAT-RDGWVKYFILHNETLVNWKHIDS------QSLLGLTTTKDGGVILCDN--EKGLLKVTE  121 (355)
Q Consensus        51 ~~~p~~i~~d~~~g~l~~~~-~~g~i~~~~~~~g~~~~~~~~~~------~p~~gl~~d~~g~L~v~~~--~~gl~~~~~  121 (355)
                      ...|++|+++ .++.+|++. .++.|.++|+++++.......+.      .|. +|++ .+++|||+++  .+.+..++.
T Consensus        83 ~~~p~~i~~~-~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~-~i~~-~~~~lyv~~~~~~~~v~viD~  159 (328)
T 3dsm_A           83 FTSPRYIHFL-SDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTE-QMVQ-YGKYVYVNCWSYQNRILKIDT  159 (328)
T ss_dssp             CSSEEEEEEE-ETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCC-CEEE-ETTEEEEEECTTCCEEEEEET
T ss_pred             CCCCcEEEEe-CCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcc-eEEE-ECCEEEEEcCCCCCEEEEEEC
Confidence            4789999997 456999998 68999999999988765444455      799 9999 5789999986  356888884


Q ss_pred             -CC--eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeec--cccccccEE
Q 018474          122 -EG--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE--GFYFANGIA  196 (355)
Q Consensus       122 -~g--~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~--~~~~pngi~  196 (355)
                       ++  .+.+... ..|++++++++|++|+++.....      ...+. ...+.++++|++++++.....  ....|++++
T Consensus       160 ~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~------~~~~~-~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la  231 (328)
T 3dsm_A          160 ETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYE------GSPYG-YEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQ  231 (328)
T ss_dssp             TTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCT------TCSSC-BCCCEEEEEETTTTEEEEEEECCTTCCCEEEE
T ss_pred             CCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCcc------CCccc-cCCceEEEEECCCCeEEEEEecCCCCCceeEE
Confidence             66  4444332 57999999999999998764100      00000 113689999999888753332  134799999


Q ss_pred             EeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECC-CCCEEEEeecCCchhhHhhhcchhHHHHHH
Q 018474          197 LSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAP-DGSFWIGLIKMNQTGVRAIQKCREKWELLD  275 (355)
Q Consensus       197 ~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~-~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~  275 (355)
                      ++||++.+|+++.   .|++++.++.+.... .+.......|+++++|+ +|++||+....-                  
T Consensus       232 ~~~d~~~lyv~~~---~v~~~d~~t~~~~~~-~~~~~~~~~p~gi~vdp~~g~lyva~~~~y------------------  289 (328)
T 3dsm_A          232 LNGTRDTLYWINN---DIWRMPVEADRVPVR-PFLEFRDTKYYGLTVNPNNGEVYVADAIDY------------------  289 (328)
T ss_dssp             ECTTSCEEEEESS---SEEEEETTCSSCCSS-CSBCCCSSCEEEEEECTTTCCEEEEECTTS------------------
T ss_pred             EecCCCEEEEEcc---EEEEEECCCCceeee-eeecCCCCceEEEEEcCCCCeEEEEccccc------------------
Confidence            9999999999875   899999865443221 12211134699999997 789999983210                  


Q ss_pred             hccchhhcccCCCCCCceEEEEEeCCCCeEEEEEEC
Q 018474          276 AYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFND  311 (355)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~  311 (355)
                                    ...+.|.+||+ +|+.+..+..
T Consensus       290 --------------~~~~~V~v~d~-~g~~~~~i~~  310 (328)
T 3dsm_A          290 --------------QQQGIVYRYSP-QGKLIDEFYV  310 (328)
T ss_dssp             --------------SSEEEEEEECT-TCCEEEEEEE
T ss_pred             --------------ccCCEEEEECC-CCCEEEEEEe
Confidence                          11368999999 7999888865

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.78  E-value=5.7e-17  Score=165.66  Aligned_cols=225  Identities=13%  Similarity=0.188  Sum_probs=168.0

Q ss_pred             CceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeecc---------CCCcccCeEECCCCC-EEEEeCCCcEEEEcC-C
Q 018474           54 PEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI---------DSQSLLGLTTTKDGG-VILCDNEKGLLKVTE-E  122 (355)
Q Consensus        54 p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~---------~~~p~~gl~~d~~g~-L~v~~~~~gl~~~~~-~  122 (355)
                      -.+|+.| .+|.||+++.+++|.++++.+++++.+...         ...+. +++.|++|+ ||+++..+||+++++ +
T Consensus       359 V~~i~~d-~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~-~i~~d~~g~~lWigt~~~Gl~~~d~~~  436 (795)
T 4a2l_A          359 VSCIVED-KDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIK-AVYVDEKKSLVYIGTHAGGLSILHRNS  436 (795)
T ss_dssp             EEEEEEC-TTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEE-EEEEETTTTEEEEEETTTEEEEEETTT
T ss_pred             eEEEEEC-CCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEE-EEEEcCCCCEEEEEeCcCceeEEeCCC
Confidence            4578888 788999999988899999988888776422         23466 788999999 999998789999995 6


Q ss_pred             C-eEEEcCC-----cCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecc-----c--
Q 018474          123 G-VEAIVPD-----ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG-----F--  189 (355)
Q Consensus       123 g-~~~~~~~-----~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~-----~--  189 (355)
                      + ++.+...     ...+.+++.|++|+||++..                   ++|++||+++++++.+...     +  
T Consensus       437 ~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-------------------~Gl~~~~~~~~~~~~~~~~~~~~~~~~  497 (795)
T 4a2l_A          437 GQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-------------------SALVRFNPEQRSFTTIEKEKDGTPVVS  497 (795)
T ss_dssp             CCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-------------------SCEEEEETTTTEEEECCBCTTCCBCCC
T ss_pred             CcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-------------------CceeEEeCCCCeEEEccccccccccCC
Confidence            6 6665431     15688899999999999853                   3699999998888766432     1  


Q ss_pred             cccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecc--cCCCCc----CceEECCCCCEEEEeecCCchhhHh
Q 018474          190 YFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIE--NLPGGP----DNINLAPDGSFWIGLIKMNQTGVRA  263 (355)
Q Consensus       190 ~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~g~p----~~i~~d~~G~lwv~~~~~~~~~~~~  263 (355)
                      .....++.+++|+ +|++..  ++|.+++.++...    .+..  ...+++    ..+..|++|++|+++..        
T Consensus       498 ~~i~~i~~d~~g~-lWigt~--~Gl~~~~~~~~~~----~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~--------  562 (795)
T 4a2l_A          498 KQITTLFRDSHKR-LWIGGE--EGLSVFKQEGLDI----QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE--------  562 (795)
T ss_dssp             CCEEEEEECTTCC-EEEEES--SCEEEEEEETTEE----EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS--------
T ss_pred             ceEEEEEECCCCC-EEEEeC--CceEEEeCCCCeE----EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC--------
Confidence            2235677888887 888764  6899999854322    1210  112233    34678999999999964        


Q ss_pred             hhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEe-CCEEEEeecCCCeEEE
Q 018474          264 IQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-DGNLYLASLQSNFIGI  342 (355)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~v~~~~~~~i~~  342 (355)
                                                    |+++||+ +.+.++.|...+|+..+.+.+++++ +|+||+++  .+.|.+
T Consensus       563 ------------------------------Gl~~~d~-~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t--~~Gl~~  609 (795)
T 4a2l_A          563 ------------------------------GFYCFNE-KDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLST--NRGISC  609 (795)
T ss_dssp             ------------------------------CEEEEET-TTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEE--TTEEEE
T ss_pred             ------------------------------CceeECC-CCCcEEEeCCCCCCchhheEEEEECCCCCEEEEc--CCceEE
Confidence                                          6999999 6667788877778766778888877 59999999  477888


Q ss_pred             eeCCC
Q 018474          343 LPLDG  347 (355)
Q Consensus       343 ~~~~~  347 (355)
                      ++..+
T Consensus       610 ~~~~~  614 (795)
T 4a2l_A          610 FNPET  614 (795)
T ss_dssp             EETTT
T ss_pred             EcCCC
Confidence            87653

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.77  E-value=8.4e-17  Score=150.75  Aligned_cols=184  Identities=10%  Similarity=0.106  Sum_probs=138.8

Q ss_pred             CCCCceEEEeeCCCeEEEEe-cCCEEEEEEcCCCeeEEeecc-CCCcccCeEECC-CCCEEEEeCCC-cEEEEcCCC--e
Q 018474           51 VNHPEDVSVVVSKGALYTAT-RDGWVKYFILHNETLVNWKHI-DSQSLLGLTTTK-DGGVILCDNEK-GLLKVTEEG--V  124 (355)
Q Consensus        51 ~~~p~~i~~d~~~g~l~~~~-~~g~i~~~~~~~g~~~~~~~~-~~~p~~gl~~d~-~g~L~v~~~~~-gl~~~~~~g--~  124 (355)
                      +..|+++++|+.++.||++. .+++|+++++.++..+.+... ...|. |+++|. .|+||+++... .|.+++.+|  .
T Consensus       115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~-glavd~~~g~lY~~d~~~~~I~~~~~dg~~~  193 (386)
T 3v65_B          115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPG-GLAVDWVHDKLYWTDSGTSRIEVANLDGAHR  193 (386)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCC-CEEEETTTTEEEEEETTTTEEEECBTTSCSC
T ss_pred             CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCcc-EEEEEeCCCeEEEEcCCCCeEEEEeCCCCce
Confidence            67899999997778888765 478999999966555554332 35789 999995 67899999874 466666666  4


Q ss_pred             EEEc-CCcCCcccEEEcc-CCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee-ccccccccEEEeCCC
Q 018474          125 EAIV-PDASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFYFANGIALSKNE  201 (355)
Q Consensus       125 ~~~~-~~~~~~~~l~~d~-dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~-~~~~~pngi~~~~dg  201 (355)
                      +.+. .....|+++++|+ +|.||++|...                .+.|+++++++...+.+. .++..||||++++++
T Consensus       194 ~~l~~~~l~~P~giavdp~~g~ly~td~~~----------------~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~  257 (386)
T 3v65_B          194 KVLLWQSLEKPRAIALHPMEGTIYWTDWGN----------------TPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAG  257 (386)
T ss_dssp             EEEECSSCSCEEEEEEETTTTEEEEEECSS----------------SCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGG
T ss_pred             EEeecCCCCCCcEEEEEcCCCeEEEeccCC----------------CCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCC
Confidence            4443 3447899999997 56999998651                368999999766555443 567889999999988


Q ss_pred             CEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474          202 DFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       202 ~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      +.|||+++..++|++++++|..   .+.+.....+.|++++++ ++++|++...
T Consensus       258 ~~lY~aD~~~~~I~~~d~dG~~---~~~~~~~~~~~P~giav~-~~~ly~td~~  307 (386)
T 3v65_B          258 RRMYWVDAKHHVIERANLDGSH---RKAVISQGLPHPFAITVF-EDSLYWTDWH  307 (386)
T ss_dssp             TEEEEEETTTTEEEEECTTSCS---CEEEECSSCSSEEEEEEE-TTEEEEEETT
T ss_pred             CEEEEEECCCCEEEEEeCCCCe---eEEEEECCCCCceEEEEE-CCEEEEeeCC
Confidence            8999999999999999987632   233333233579999996 4678888865

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.77  E-value=2.1e-16  Score=147.98  Aligned_cols=229  Identities=13%  Similarity=0.103  Sum_probs=168.3

Q ss_pred             CceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEEC-CCCCEEEEeCCC-cEEEEcCCC--eEEE-c
Q 018474           54 PEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTT-KDGGVILCDNEK-GLLKVTEEG--VEAI-V  128 (355)
Q Consensus        54 p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d-~~g~L~v~~~~~-gl~~~~~~g--~~~~-~  128 (355)
                      -.+.+.+ ....|+++.. ..|+++++..+....+......|. ++++| .+++||+++... .|++++.+|  .+.+ .
T Consensus        79 ~~C~~~~-~~~~l~~~~~-~~I~~i~~~~~~~~~~~~~~~~~~-gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~  155 (386)
T 3v65_B           79 RSCKALG-PEPVLLFANR-IDIRQVLPHRSEYTLLLNNLENAI-ALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS  155 (386)
T ss_dssp             SCEEECS-SCCEEEEECB-SCEEEECTTSCCCEEEECSCSCEE-EEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC
T ss_pred             CeECCcc-ccceeEeecC-ccceeeccCCCcEEEEecCCCccE-EEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe
Confidence            3455555 4566776655 569999997767666666566799 99999 578899999764 588888654  4444 3


Q ss_pred             CCcCCcccEEEcc-CCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee-ccccccccEEEeCCCCEEEE
Q 018474          129 PDASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFYFANGIALSKNEDFVVV  206 (355)
Q Consensus       129 ~~~~~~~~l~~d~-dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~-~~~~~pngi~~~~dg~~l~v  206 (355)
                      .....|+++++|+ .|+||++|..                 .++|.++++++...+.+. .++..|++++++|++..+||
T Consensus       156 ~~~~~p~glavd~~~g~lY~~d~~-----------------~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~  218 (386)
T 3v65_B          156 TGLESPGGLAVDWVHDKLYWTDSG-----------------TSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYW  218 (386)
T ss_dssp             SSCSCCCCEEEETTTTEEEEEETT-----------------TTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEE
T ss_pred             CCCCCccEEEEEeCCCeEEEEcCC-----------------CCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEE
Confidence            3447899999996 6799999876                 457888888766544443 46788999999998889999


Q ss_pred             EeCCC-CeEEEEEeCCCCCcceeEecccCCCCcCceEEC-CCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcc
Q 018474          207 CESWK-FRCRRYWLKGDRAGILDAFIENLPGGPDNINLA-PDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLL  284 (355)
Q Consensus       207 ~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d-~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (355)
                      ++... ++|++++.+|..   .+.+....-..|+++++| .+|+||++....                            
T Consensus       219 td~~~~~~I~r~~~dG~~---~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~----------------------------  267 (386)
T 3v65_B          219 TDWGNTPRIEASSMDGSG---RRIIADTHLFWPNGLTIDYAGRRMYWVDAKH----------------------------  267 (386)
T ss_dssp             EECSSSCEEEEEETTSCS---CEEEECSSCSCEEEEEEEGGGTEEEEEETTT----------------------------
T ss_pred             eccCCCCEEEEEeCCCCC---cEEEEECCCCCeeeEEEeCCCCEEEEEECCC----------------------------
Confidence            99887 899999987642   223332223469999999 467899998652                            


Q ss_pred             cCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeCCEEEEeecCCCeEEEeeC
Q 018474          285 LPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPL  345 (355)
Q Consensus       285 ~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~  345 (355)
                              ..|.+++. +|...+.+... +  ...+.++...+++||+++..+++|.+++.
T Consensus       268 --------~~I~~~d~-dG~~~~~~~~~-~--~~~P~giav~~~~ly~td~~~~~V~~~~~  316 (386)
T 3v65_B          268 --------HVIERANL-DGSHRKAVISQ-G--LPHPFAITVFEDSLYWTDWHTKSINSANK  316 (386)
T ss_dssp             --------TEEEEECT-TSCSCEEEECS-S--CSSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred             --------CEEEEEeC-CCCeeEEEEEC-C--CCCceEEEEECCEEEEeeCCCCeEEEEEC
Confidence                    46999998 77544444332 2  33566777788999999999999999973

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.77  E-value=1.5e-16  Score=145.03  Aligned_cols=184  Identities=13%  Similarity=0.108  Sum_probs=135.9

Q ss_pred             CCCCceEEEeeCCCeEEEEec-CCEEEEEEcCC----CeeEEeec-cCCCcccCeEECC-CCCEEEEeCCC-cEEEEcCC
Q 018474           51 VNHPEDVSVVVSKGALYTATR-DGWVKYFILHN----ETLVNWKH-IDSQSLLGLTTTK-DGGVILCDNEK-GLLKVTEE  122 (355)
Q Consensus        51 ~~~p~~i~~d~~~g~l~~~~~-~g~i~~~~~~~----g~~~~~~~-~~~~p~~gl~~d~-~g~L~v~~~~~-gl~~~~~~  122 (355)
                      +..|+++++|+.++.+|++.. +++|+++++.+    ...+.+.. ....|. |+++|. +++||+++... .|.+++.+
T Consensus        29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~-glavd~~~~~ly~~d~~~~~I~~~~~~  107 (316)
T 1ijq_A           29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD-GLAVDWIHSNIYWTDSVLGTVSVADTK  107 (316)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC-EEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC-EEEEeecCCeEEEEECCCCEEEEEeCC
Confidence            688999999976788887665 68999999854    22233322 235788 999995 67899998764 57777765


Q ss_pred             C--eEEEcC-CcCCcccEEEcc-CCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee-ccccccccEEE
Q 018474          123 G--VEAIVP-DASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFYFANGIAL  197 (355)
Q Consensus       123 g--~~~~~~-~~~~~~~l~~d~-dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~-~~~~~pngi~~  197 (355)
                      |  .+.+.. ....|+++++|+ +|.||+++...                .+.|+++++++...+.+. ..+..|+|+++
T Consensus       108 g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~----------------~~~I~~~~~dG~~~~~~~~~~~~~P~gla~  171 (316)
T 1ijq_A          108 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT----------------PAKIKKGGLNGVDIYSLVTENIQWPNGITL  171 (316)
T ss_dssp             SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSS----------------SCEEEEEETTSCCEEEEECSSCSCEEEEEE
T ss_pred             CCceEEEEECCCCCcceEEeCCCCCEEEEEccCC----------------CCeEEEEcCCCCCeEEEEECCCCCceEEEE
Confidence            5  444433 447899999997 67999998641                358999998766555543 46788999999


Q ss_pred             eCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEeccc--CCCCcCceEECCCCCEEEEeec
Q 018474          198 SKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIEN--LPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       198 ~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      +++++.+||+++..++|.+++++|..   .+.+...  ....|+++++|. |++|++...
T Consensus       172 d~~~~~lY~~D~~~~~I~~~d~dg~~---~~~~~~~~~~~~~P~giav~~-~~ly~~d~~  227 (316)
T 1ijq_A          172 DLLSGRLYWVDSKLHSISSIDVNGGN---RKTILEDEKRLAHPFSLAVFE-DKVFWTDII  227 (316)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSCS---CEEEEECTTTTSSEEEEEEET-TEEEEEETT
T ss_pred             eccCCEEEEEECCCCeEEEEecCCCc---eEEEeecCCccCCcEEEEEEC-CEEEEEECC
Confidence            99988999999999999999997632   3334322  234699999985 789998865

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.76  E-value=6.3e-16  Score=137.07  Aligned_cols=220  Identities=14%  Similarity=0.139  Sum_probs=156.5

Q ss_pred             eEEEEecCCEEEEEEcCCCeeE-----E-eeccCCCcccCeEECC-CCCEEEEeCCC-cEEEEcCCC--eEEEc-CCcCC
Q 018474           65 ALYTATRDGWVKYFILHNETLV-----N-WKHIDSQSLLGLTTTK-DGGVILCDNEK-GLLKVTEEG--VEAIV-PDASF  133 (355)
Q Consensus        65 ~l~~~~~~g~i~~~~~~~g~~~-----~-~~~~~~~p~~gl~~d~-~g~L~v~~~~~-gl~~~~~~g--~~~~~-~~~~~  133 (355)
                      .||++.. +.|++++...+...     . +.....+|. ++++|+ +++||+++... .+++++.+|  .+.+. .....
T Consensus         3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~-gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~   80 (267)
T 1npe_A            3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVII-GLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS   80 (267)
T ss_dssp             EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEE-EEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred             EEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEE-EEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence            5666654 57999998544321     1 111224688 999997 57899999764 588888644  44433 33468


Q ss_pred             cccEEEccC-CcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee-ccccccccEEEeCCCCEEEEEeCC-
Q 018474          134 TNDVIAASD-GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFYFANGIALSKNEDFVVVCESW-  210 (355)
Q Consensus       134 ~~~l~~d~d-G~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~-~~~~~pngi~~~~dg~~l~v~~~~-  210 (355)
                      |+++++|++ |+||+++..                 .+.+.++++++...+.+. .++..|+++++++++..+||++.. 
T Consensus        81 p~~ia~d~~~~~lyv~d~~-----------------~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~  143 (267)
T 1npe_A           81 PEGIALDHLGRTIFWTDSQ-----------------LDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR  143 (267)
T ss_dssp             EEEEEEETTTTEEEEEETT-----------------TTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCS
T ss_pred             ccEEEEEecCCeEEEEECC-----------------CCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCC
Confidence            999999985 699999865                 457999998765444443 345789999999988889999976 


Q ss_pred             -CCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCC-CEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCC
Q 018474          211 -KFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDG-SFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMG  288 (355)
Q Consensus       211 -~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G-~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (355)
                       .++|+++++++...   +.+.......|.++++|++| ++|++....                                
T Consensus       144 ~~~~I~~~~~dg~~~---~~~~~~~~~~P~gia~d~~~~~lyv~d~~~--------------------------------  188 (267)
T 1npe_A          144 DNPKIETSHMDGTNR---RILAQDNLGLPNGLTFDAFSSQLCWVDAGT--------------------------------  188 (267)
T ss_dssp             SSCEEEEEETTSCCC---EEEECTTCSCEEEEEEETTTTEEEEEETTT--------------------------------
T ss_pred             CCcEEEEEecCCCCc---EEEEECCCCCCcEEEEcCCCCEEEEEECCC--------------------------------
Confidence             57999999876422   22322222469999999864 799988652                                


Q ss_pred             CCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeCCEEEEeecCCCeEEEeeCCC
Q 018474          289 SDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLDG  347 (355)
Q Consensus       289 ~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~~  347 (355)
                          +.|.++++ +|.....+..  +  ...+.+++.++++||+++..++.|.+++..+
T Consensus       189 ----~~I~~~~~-~g~~~~~~~~--~--~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~  238 (267)
T 1npe_A          189 ----HRAECLNP-AQPGRRKVLE--G--LQYPFAVTSYGKNLYYTDWKTNSVIAMDLAI  238 (267)
T ss_dssp             ----TEEEEEET-TEEEEEEEEE--C--CCSEEEEEEETTEEEEEETTTTEEEEEETTT
T ss_pred             ----CEEEEEec-CCCceEEEec--C--CCCceEEEEeCCEEEEEECCCCeEEEEeCCC
Confidence                46999999 7765444432  2  2245567778999999999999999999764

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.76  E-value=7.9e-16  Score=140.21  Aligned_cols=222  Identities=14%  Similarity=0.138  Sum_probs=161.5

Q ss_pred             eEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECC-CCCEEEEeCC-CcEEEEcC-C----C-eEEE-cCCcCCcc
Q 018474           65 ALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTK-DGGVILCDNE-KGLLKVTE-E----G-VEAI-VPDASFTN  135 (355)
Q Consensus        65 ~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~-~g~L~v~~~~-~gl~~~~~-~----g-~~~~-~~~~~~~~  135 (355)
                      .|+++.. ..|.+++..+++...+......|. ++++|+ +++||+++.. +.|++++. .    . .+.+ ......|.
T Consensus         3 ~ll~~~~-~~I~~i~~~~~~~~~~~~~~~~p~-g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~   80 (316)
T 1ijq_A            3 YLFFTNR-HEVRKMTLDRSEYTSLIPNLRNVV-ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD   80 (316)
T ss_dssp             EEEEECB-SSEEEEETTSCCCEEEECSCSSEE-EEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred             EEEEECC-CeEEEEECCCcceEehhcCCCceE-EEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence            3555554 459999997776666555567799 999996 5789999976 45888874 3    2 3333 33346899


Q ss_pred             cEEEcc-CCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee-ccccccccEEEeCCCCEEEEEeCCC-C
Q 018474          136 DVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFYFANGIALSKNEDFVVVCESWK-F  212 (355)
Q Consensus       136 ~l~~d~-dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~-~~~~~pngi~~~~dg~~l~v~~~~~-~  212 (355)
                      ++++|+ +|+||++|..                 .+.|.++++++...+.+. ..+..|++++++|++..+||++... +
T Consensus        81 glavd~~~~~ly~~d~~-----------------~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~  143 (316)
T 1ijq_A           81 GLAVDWIHSNIYWTDSV-----------------LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPA  143 (316)
T ss_dssp             EEEEETTTTEEEEEETT-----------------TTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSC
T ss_pred             EEEEeecCCeEEEEECC-----------------CCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCC
Confidence            999996 6799999876                 468999998776655554 3678899999999888899999875 7


Q ss_pred             eEEEEEeCCCCCcceeEecccCCCCcCceEECC-CCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCC
Q 018474          213 RCRRYWLKGDRAGILDAFIENLPGGPDNINLAP-DGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDA  291 (355)
Q Consensus       213 ~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~-~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (355)
                      +|++++++|..   .+.+....-..|.++++|. ++++|++....                                   
T Consensus       144 ~I~~~~~dG~~---~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~-----------------------------------  185 (316)
T 1ijq_A          144 KIKKGGLNGVD---IYSLVTENIQWPNGITLDLLSGRLYWVDSKL-----------------------------------  185 (316)
T ss_dssp             EEEEEETTSCC---EEEEECSSCSCEEEEEEETTTTEEEEEETTT-----------------------------------
T ss_pred             eEEEEcCCCCC---eEEEEECCCCCceEEEEeccCCEEEEEECCC-----------------------------------
Confidence            99999987642   2233322234699999995 46899988542                                   


Q ss_pred             ceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeCCEEEEeecCCCeEEEeeCC
Q 018474          292 GARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLD  346 (355)
Q Consensus       292 ~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~  346 (355)
                       ..|.+++. +|...+.+....+. ...+.+++.++++||++...+++|.+++..
T Consensus       186 -~~I~~~d~-dg~~~~~~~~~~~~-~~~P~giav~~~~ly~~d~~~~~V~~~~~~  237 (316)
T 1ijq_A          186 -HSISSIDV-NGGNRKTILEDEKR-LAHPFSLAVFEDKVFWTDIINEAIFSANRL  237 (316)
T ss_dssp             -TEEEEEET-TSCSCEEEEECTTT-TSSEEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred             -CeEEEEec-CCCceEEEeecCCc-cCCcEEEEEECCEEEEEECCCCeEEEEeCC
Confidence             46999999 77655544332111 335667777889999999999999999863

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.75  E-value=1.9e-15  Score=138.20  Aligned_cols=239  Identities=14%  Similarity=0.123  Sum_probs=168.1

Q ss_pred             CCCceEEEeeCCCeEEEEec-------CCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCC-CcEEEEcC-
Q 018474           52 NHPEDVSVVVSKGALYTATR-------DGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNE-KGLLKVTE-  121 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~-------~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~-~gl~~~~~-  121 (355)
                      .+|.+++++++++.+|+++.       ++.|+.+|..+++.......+..|. +++++++|+ +|++... +.+..++. 
T Consensus        41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~v~~~~~~~v~~~d~~  119 (353)
T 3vgz_A           41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPF-GATINNTTQTLWFGNTVNSAVTAIDAK  119 (353)
T ss_dssp             SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCC-SEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcc-eEEECCCCCEEEEEecCCCEEEEEeCC
Confidence            67899999987789999874       4579999998887665545556788 999999987 8998875 45777774 


Q ss_pred             CC--eEEEcCCc---------CCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeec-c
Q 018474          122 EG--VEAIVPDA---------SFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE-G  188 (355)
Q Consensus       122 ~g--~~~~~~~~---------~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~-~  188 (355)
                      ++  ...+....         ..|++++++++| .+|+++..                ..+.++.||+++++...... .
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~----------------~~~~i~~~d~~~~~~~~~~~~~  183 (353)
T 3vgz_A          120 TGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIG----------------KESVIWVVDGGNIKLKTAIQNT  183 (353)
T ss_dssp             TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEES----------------SSCEEEEEETTTTEEEEEECCC
T ss_pred             CCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecC----------------CCceEEEEcCCCCceEEEecCC
Confidence            56  34443321         137889999998 48887632                14579999998887765554 3


Q ss_pred             ccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecc-cCCCCcCceEECCCCC-EEEEeecCCchhhHhhhc
Q 018474          189 FYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIE-NLPGGPDNINLAPDGS-FWIGLIKMNQTGVRAIQK  266 (355)
Q Consensus       189 ~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~g~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~  266 (355)
                      ...|++++++||++.+|+++. .+.|..++....+......... .....+.++.++++|+ +|++....          
T Consensus       184 ~~~~~~~~~s~dg~~l~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~----------  252 (353)
T 3vgz_A          184 GKMSTGLALDSEGKRLYTTNA-DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKA----------  252 (353)
T ss_dssp             CTTCCCCEEETTTTEEEEECT-TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSS----------
T ss_pred             CCccceEEECCCCCEEEEEcC-CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCC----------
Confidence            455899999999999999875 6789999975432211111111 1223466789999997 77776431          


Q ss_pred             chhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeCCEEEEeecCCCeEEEeeCC
Q 018474          267 CREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLD  346 (355)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~  346 (355)
                                                +.|..+|.++++....+..+..    ....+..++++||+++...+.|.++++.
T Consensus       253 --------------------------~~v~~~d~~~~~~~~~~~~~~~----~~~~~s~dg~~l~v~~~~~~~v~~~d~~  302 (353)
T 3vgz_A          253 --------------------------AEVLVVDTRNGNILAKVAAPES----LAVLFNPARNEAYVTHRQAGKVSVIDAK  302 (353)
T ss_dssp             --------------------------SEEEEEETTTCCEEEEEECSSC----CCEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             --------------------------CEEEEEECCCCcEEEEEEcCCC----ceEEECCCCCEEEEEECCCCeEEEEECC
Confidence                                      4689999877888777765432    1111222346799999889999999876


Q ss_pred             CC
Q 018474          347 GP  348 (355)
Q Consensus       347 ~~  348 (355)
                      +.
T Consensus       303 ~~  304 (353)
T 3vgz_A          303 SY  304 (353)
T ss_dssp             TT
T ss_pred             CC
Confidence            53

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.75  E-value=2.6e-16  Score=139.00  Aligned_cols=184  Identities=14%  Similarity=0.181  Sum_probs=136.0

Q ss_pred             CCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccC-CCcccCeEECCCCCEEEEeCC-CcEEEEcC-CC-e
Q 018474           49 GCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHID-SQSLLGLTTTKDGGVILCDNE-KGLLKVTE-EG-V  124 (355)
Q Consensus        49 ~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~-~~p~~gl~~d~~g~L~v~~~~-~gl~~~~~-~g-~  124 (355)
                      .....|.+|+++ .++.+|++..+++|+++++.++....+.... ..|. ++++|++|+||+++.. +++++++. +. .
T Consensus        64 ~~~~~p~~i~~~-~~g~l~v~~~~~~i~~~d~~~~~~~~~~~~~~~~p~-~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~  141 (270)
T 1rwi_B           64 NGLYQPQGLAVD-GAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPE-GLAVDTQGAVYVADRGNNRVVKLAAGSKTQ  141 (270)
T ss_dssp             CSCCSCCCEEEC-TTCCEEEEETTTEEEEECTTCSCCEECCCCSCSSEE-EEEECTTCCEEEEEGGGTEEEEECTTCCSC
T ss_pred             CCcCCcceeEEC-CCCCEEEEcCCCEEEEEeCCCceEeeeecCCcCCCc-ceEECCCCCEEEEECCCCEEEEEECCCcee
Confidence            335689999999 5677999887889999998666555443222 5688 9999999999999865 45888874 33 3


Q ss_pred             EEEc-CCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee-ccccccccEEEeCCCC
Q 018474          125 EAIV-PDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFYFANGIALSKNED  202 (355)
Q Consensus       125 ~~~~-~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~-~~~~~pngi~~~~dg~  202 (355)
                      .... .....|++++++++|++|+++..                 .+.+++||++++...... ..+..|.+++++++|+
T Consensus       142 ~~~~~~~~~~p~~i~~~~~g~l~v~~~~-----------------~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~  204 (270)
T 1rwi_B          142 TVLPFTGLNDPDGVAVDNSGNVYVTDTD-----------------NNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGT  204 (270)
T ss_dssp             EECCCCSCCSCCCEEECTTCCEEEEEGG-----------------GTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCC
T ss_pred             EeeccccCCCceeEEEeCCCCEEEEECC-----------------CCEEEEEecCCCceEeecccCCCCceEEEECCCCC
Confidence            2222 22268999999999999999754                 458999999877654432 3446799999999995


Q ss_pred             EEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474          203 FVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       203 ~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                       +|+++...++|.+++.++...   ..........|.++++|++|++|+++..
T Consensus       205 -l~v~~~~~~~v~~~~~~~~~~---~~~~~~~~~~p~~i~~~~~g~l~v~~~~  253 (270)
T 1rwi_B          205 -VYVTEHNTNQVVKLLAGSTTS---TVLPFTGLNTPLAVAVDSDRTVYVADRG  253 (270)
T ss_dssp             -EEEEETTTSCEEEECTTCSCC---EECCCCSCSCEEEEEECTTCCEEEEEGG
T ss_pred             -EEEEECCCCcEEEEcCCCCcc---eeeccCCCCCceeEEECCCCCEEEEECC
Confidence             999998888999999865322   1111111135889999999999999865

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.75  E-value=4.7e-16  Score=158.89  Aligned_cols=224  Identities=15%  Similarity=0.192  Sum_probs=162.2

Q ss_pred             CceEEEeeCCCe-EEEEecCCEEEEEEcCCCeeEEeecc-----CCCcccCeEECCCCCEEEEeCCCcEEEEcC-CC-eE
Q 018474           54 PEDVSVVVSKGA-LYTATRDGWVKYFILHNETLVNWKHI-----DSQSLLGLTTTKDGGVILCDNEKGLLKVTE-EG-VE  125 (355)
Q Consensus        54 p~~i~~d~~~g~-l~~~~~~g~i~~~~~~~g~~~~~~~~-----~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~-~g-~~  125 (355)
                      ..+++.| .++. ||+++.+++|+++++++++++.+...     ...+. +++.|++|+||+++. .|++++++ ++ .+
T Consensus       408 v~~i~~d-~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~-~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~  484 (795)
T 4a2l_A          408 IKAVYVD-EKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVY-AILPDGEGNLWLGTL-SALVRFNPEQRSFT  484 (795)
T ss_dssp             EEEEEEE-TTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEE-EEEECSSSCEEEEES-SCEEEEETTTTEEE
T ss_pred             EEEEEEc-CCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeE-EEEECCCCCEEEEec-CceeEEeCCCCeEE
Confidence            3477888 6777 99999988899999988888877531     23467 889999999999997 79999995 66 65


Q ss_pred             EEcCC-------cCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeec-----cc--cc
Q 018474          126 AIVPD-------ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE-----GF--YF  191 (355)
Q Consensus       126 ~~~~~-------~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~-----~~--~~  191 (355)
                      .+...       ...++++..|++|+||+++.                   ++|++||++++++ .+..     .+  ..
T Consensus       485 ~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-------------------~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~  544 (795)
T 4a2l_A          485 TIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-------------------EGLSVFKQEGLDI-QKASILPVSNVTKLF  544 (795)
T ss_dssp             ECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-------------------SCEEEEEEETTEE-EECCCSCSCGGGGSC
T ss_pred             EccccccccccCCceEEEEEECCCCCEEEEeC-------------------CceEEEeCCCCeE-EEecCCCCCCCCCCe
Confidence            54321       15678899999999999853                   3799999888776 3321     11  12


Q ss_pred             cccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCc----eEECCCCCEEEEeecCCchhhHhhhcc
Q 018474          192 ANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDN----INLAPDGSFWIGLIKMNQTGVRAIQKC  267 (355)
Q Consensus       192 pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~----i~~d~~G~lwv~~~~~~~~~~~~~~~~  267 (355)
                      .+.++.+++|+ +|++..  ++|.+|+.++.   .++.+. ...++|++    +..|++|++|+++..            
T Consensus       545 i~~i~~d~~g~-lWigT~--~Gl~~~d~~~~---~~~~~~-~~~gl~~~~i~~i~~d~~g~lWi~t~~------------  605 (795)
T 4a2l_A          545 TNCIYEASNGI-IWVGTR--EGFYCFNEKDK---QIKRYN-TTNGLPNNVVYGILEDSFGRLWLSTNR------------  605 (795)
T ss_dssp             EEEEEECTTSC-EEEEES--SCEEEEETTTT---EEEEEC-GGGTCSCSCEEEEEECTTSCEEEEETT------------
T ss_pred             eEEEEECCCCC-EEEEeC--CCceeECCCCC---cEEEeC-CCCCCchhheEEEEECCCCCEEEEcCC------------
Confidence            34577778887 787754  38999997543   333332 22345554    678999999999954            


Q ss_pred             hhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccce--eEEEE-eCCEEEEeecCCCeEEEee
Q 018474          268 REKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFV--TSAAE-FDGNLYLASLQSNFIGILP  344 (355)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~--~~~~~-~~g~L~v~~~~~~~i~~~~  344 (355)
                                                |+.+|+| +.+.+..|...+|+....+  .+++. .+|+||+|+.  +.+.++.
T Consensus       606 --------------------------Gl~~~~~-~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~~--~Gl~~~~  656 (795)
T 4a2l_A          606 --------------------------GISCFNP-ETEKFRNFTESDGLQSNQFNTASYCRTSVGQMYFGGI--NGITTFR  656 (795)
T ss_dssp             --------------------------EEEEEET-TTTEEEEECGGGTCSCSCEEEEEEEECTTSCEEEEET--TEEEEEC
T ss_pred             --------------------------ceEEEcC-CCCcEEEcCCcCCCccccCccCceeECCCCeEEEecC--CceEEEc
Confidence                                      7999999 7677888988788655544  34444 4699999996  5688877


Q ss_pred             CCCC
Q 018474          345 LDGP  348 (355)
Q Consensus       345 ~~~~  348 (355)
                      ....
T Consensus       657 p~~~  660 (795)
T 4a2l_A          657 PELL  660 (795)
T ss_dssp             GGGC
T ss_pred             HHHc
Confidence            5543

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.75  E-value=2.5e-16  Score=160.56  Aligned_cols=231  Identities=14%  Similarity=0.162  Sum_probs=164.0

Q ss_pred             CceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeecc----------CCCcccCeEECCCCCEEEEeCCCcEEEEcC-C
Q 018474           54 PEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI----------DSQSLLGLTTTKDGGVILCDNEKGLLKVTE-E  122 (355)
Q Consensus        54 p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~----------~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~-~  122 (355)
                      ..+|..| .+|.+|+++.+++|.++++.++.++.+...          ...+. +++.|++|+||+++..+||+++++ +
T Consensus       315 v~~i~~D-~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~-~i~~d~~g~lWigt~~~Gl~~~~~~~  392 (781)
T 3v9f_A          315 ARYIFQD-SFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVS-SVCDDGQGKLWIGTDGGGINVFENGK  392 (781)
T ss_dssp             EEEEEEC-SSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEE-EEEECTTSCEEEEEBSSCEEEEETTE
T ss_pred             EEEEEEe-CCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceE-EEEEcCCCCEEEEeCCCcEEEEECCC
Confidence            4578889 788999999888899999987777666321          13466 788999999999997789999995 4


Q ss_pred             C-eEEEcC--C--cCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecc-c--ccccc
Q 018474          123 G-VEAIVP--D--ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG-F--YFANG  194 (355)
Q Consensus       123 g-~~~~~~--~--~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~-~--~~png  194 (355)
                      + .+.+..  .  ...+.+++.|++|+||++..                  .+++++||+++++++.+... +  .....
T Consensus       393 ~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~------------------~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~  454 (781)
T 3v9f_A          393 RVAIYNKENRELLSNSVLCSLKDSEGNLWFGTY------------------LGNISYYNTRLKKFQIIELEKNELLDVRV  454 (781)
T ss_dssp             EEEECC-----CCCSBEEEEEECTTSCEEEEET------------------TEEEEEECSSSCEEEECCSTTTCCCCEEE
T ss_pred             CeEEEccCCCCCCCcceEEEEECCCCCEEEEec------------------cCCEEEEcCCCCcEEEeccCCCCCCeEEE
Confidence            4 443321  1  15678899999999999853                  35899999988888766432 1  22345


Q ss_pred             EEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecc-cC-CCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHH
Q 018474          195 IALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIE-NL-PGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWE  272 (355)
Q Consensus       195 i~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~-~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~  272 (355)
                      ++.+++|+ +|++..  ++|.+|+.++........... .. ......+..|++|++|+++..                 
T Consensus       455 i~~d~~g~-lwigt~--~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~-----------------  514 (781)
T 3v9f_A          455 FYEDKNKK-IWIGTH--AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFG-----------------  514 (781)
T ss_dssp             EEECTTSE-EEEEET--TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESS-----------------
T ss_pred             EEECCCCC-EEEEEC--CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcC-----------------
Confidence            66777775 888754  799999976543322211000 00 123445778999999999964                 


Q ss_pred             HHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEe-CCEEEEeecCCCeE-EEeeCCC
Q 018474          273 LLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-DGNLYLASLQSNFI-GILPLDG  347 (355)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~v~~~~~~~i-~~~~~~~  347 (355)
                                          +|++++++ +++.+..|..++++..+.+..++++ +|+||+++.  ..+ .+++..+
T Consensus       515 --------------------~Gl~~~~~-~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~--~Glv~~~d~~~  568 (781)
T 3v9f_A          515 --------------------GGVGIYTP-DMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG--EGLVCFPSARN  568 (781)
T ss_dssp             --------------------SCEEEECT-TCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET--TEEEEESCTTT
T ss_pred             --------------------CCEEEEeC-CCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC--CCceEEECCCC
Confidence                                36999999 7777788877777666677888876 599999997  456 7776543

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.74  E-value=2.7e-16  Score=160.35  Aligned_cols=225  Identities=13%  Similarity=0.112  Sum_probs=163.4

Q ss_pred             CceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeecc---CCCcccCeEECCCCCEEEEeCCCcEEEEcC-CC-eEEEc
Q 018474           54 PEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI---DSQSLLGLTTTKDGGVILCDNEKGLLKVTE-EG-VEAIV  128 (355)
Q Consensus        54 p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~---~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~-~g-~~~~~  128 (355)
                      ..+|+.| .++.||+++.+++|+++++++++++.+...   ...+. +++.|++|+||+++. .||+++++ ++ ++.+.
T Consensus       409 v~~i~~d-~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~-~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~  485 (781)
T 3v9f_A          409 VLCSLKD-SEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVR-VFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHY  485 (781)
T ss_dssp             EEEEEEC-TTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEE-EEEECTTSEEEEEET-TEEEEEESSSSSCCEEE
T ss_pred             eEEEEEC-CCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEE-EEEECCCCCEEEEEC-CceEEEeCCCCeEEecc
Confidence            3567778 688999999888899999988888877532   24567 889999999999997 79999995 55 54433


Q ss_pred             C-C-----cCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecccc----ccccEEEe
Q 018474          129 P-D-----ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFY----FANGIALS  198 (355)
Q Consensus       129 ~-~-----~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~----~pngi~~~  198 (355)
                      . .     ...+++++.|++|+||+++..                  ++|++||+++++++.+.....    ....++.+
T Consensus       486 ~~~~~~~~~~~i~~i~~d~~g~lWigt~~------------------~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d  547 (781)
T 3v9f_A          486 DTSNSQLLENFVRSIAQDSEGRFWIGTFG------------------GGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRS  547 (781)
T ss_dssp             CTTTSSCSCSCEEEEEECTTCCEEEEESS------------------SCEEEECTTCCEEEEECTTTTCSCSCEEEEEEC
T ss_pred             cCcccccccceeEEEEEcCCCCEEEEEcC------------------CCEEEEeCCCCeEEEccCCCCCCCCeeEEEEEC
Confidence            2 1     156888999999999998642                  469999998888877643221    22457777


Q ss_pred             CCCCEEEEEeCCCCeE-EEEEeCCCCCcceeEecccCCCCc----CceEECCCCCEEEEeecCCchhhHhhhcchhHHHH
Q 018474          199 KNEDFVVVCESWKFRC-RRYWLKGDRAGILDAFIENLPGGP----DNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWEL  273 (355)
Q Consensus       199 ~dg~~l~v~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~g~p----~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~  273 (355)
                      ++|+ +|++..  +++ .+|+.++.+   ++.+. ...++|    .++..|++|+||+++..                  
T Consensus       548 ~~g~-lWi~T~--~Glv~~~d~~~~~---~~~~~-~~~gl~~~~i~~i~~d~~g~lW~~t~~------------------  602 (781)
T 3v9f_A          548 SKGQ-MWLATG--EGLVCFPSARNFD---YQVFQ-RKEGLPNTHIRAISEDKNGNIWASTNT------------------  602 (781)
T ss_dssp             TTSC-EEEEET--TEEEEESCTTTCC---CEEEC-GGGTCSCCCCCEEEECSSSCEEEECSS------------------
T ss_pred             CCCC-EEEEEC--CCceEEECCCCCc---EEEcc-ccCCCCCceEEEEEECCCCCEEEEcCC------------------
Confidence            8887 787754  677 998875433   33332 122333    35788999999999854                  


Q ss_pred             HHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccce--eEEEEe-CCEEEEeecCCCeEEEeeCCC
Q 018474          274 LDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFV--TSAAEF-DGNLYLASLQSNFIGILPLDG  347 (355)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~--~~~~~~-~g~L~v~~~~~~~i~~~~~~~  347 (355)
                                          |+.+|+| +.+.+..|...+|+.....  .+++.. +|+||+|+.  +.+.+++...
T Consensus       603 --------------------Gl~~~~~-~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~~--~Gl~~f~p~~  656 (781)
T 3v9f_A          603 --------------------GISCYIT-SKKCFYTYDHSNNIPQGSFISGCVTKDHNGLIYFGSI--NGLCFFNPDI  656 (781)
T ss_dssp             --------------------CEEEEET-TTTEEEEECGGGTCCSSCEEEEEEEECTTSCEEEEET--TEEEEECSCC
T ss_pred             --------------------ceEEEEC-CCCceEEecccCCccccccccCceEECCCCEEEEECC--CceEEEChhh
Confidence                                6999999 7777889987788654433  234444 699999996  4688887554

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.74  E-value=4.5e-16  Score=141.88  Aligned_cols=184  Identities=13%  Similarity=0.125  Sum_probs=136.3

Q ss_pred             CCCCceEEEeeCCCeEEEEe-cCCEEEEEEcCCCee--EEeeccCCCcccCeEECC-CCCEEEEeCCC-cEEEEcCCC--
Q 018474           51 VNHPEDVSVVVSKGALYTAT-RDGWVKYFILHNETL--VNWKHIDSQSLLGLTTTK-DGGVILCDNEK-GLLKVTEEG--  123 (355)
Q Consensus        51 ~~~p~~i~~d~~~g~l~~~~-~~g~i~~~~~~~g~~--~~~~~~~~~p~~gl~~d~-~g~L~v~~~~~-gl~~~~~~g--  123 (355)
                      +..|.++.+++.++.||.+. .+++|+++++.++..  .........|. |+++|. .|+||+++... .|.+++.+|  
T Consensus        34 ~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~-glavd~~~g~ly~~d~~~~~I~~~~~dG~~  112 (318)
T 3sov_A           34 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPD-GLACDWLGEKLYWTDSETNRIEVSNLDGSL  112 (318)
T ss_dssp             EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCC-EEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCcc-EEEEEcCCCeEEEEECCCCEEEEEECCCCc
Confidence            56788999997678887765 478999999865532  22223335788 999995 78899999764 577777666  


Q ss_pred             eEEEc-CCcCCcccEEEcc-CCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEe-eccccccccEEEeCC
Q 018474          124 VEAIV-PDASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL-HEGFYFANGIALSKN  200 (355)
Q Consensus       124 ~~~~~-~~~~~~~~l~~d~-dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~-~~~~~~pngi~~~~d  200 (355)
                      .+.+. .....|+++++|+ .|.||++|..                ..+.|+++++++...+.+ ..++..|||++++++
T Consensus       113 ~~~l~~~~~~~P~giavdp~~g~ly~td~~----------------~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~  176 (318)
T 3sov_A          113 RKVLFWQELDQPRAIALDPSSGFMYWTDWG----------------EVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYE  176 (318)
T ss_dssp             CEEEECSSCSSEEEEEEEGGGTEEEEEECS----------------SSCEEEEEETTSCSCEEEECSSCSCEEEEEEETT
T ss_pred             EEEEEeCCCCCccEEEEeCCCCEEEEEecC----------------CCCEEEEEEcCCCCeEEEEECCCCCccEEEEecc
Confidence            45444 4447899999997 5799999854                145899999876554444 356788999999998


Q ss_pred             CCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474          201 EDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       201 g~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      ++.|||+++..++|++++++|.   ..+.+.....+.|+++++|. +.+|++...
T Consensus       177 ~~~lY~aD~~~~~I~~~d~dG~---~~~~~~~~~~~~P~glav~~-~~lywtd~~  227 (318)
T 3sov_A          177 EQKLYWADAKLNFIHKSNLDGT---NRQAVVKGSLPHPFALTLFE-DILYWTDWS  227 (318)
T ss_dssp             TTEEEEEETTTTEEEEEETTSC---SCEEEECSCCSCEEEEEEET-TEEEEEETT
T ss_pred             CCEEEEEECCCCEEEEEcCCCC---ceEEEecCCCCCceEEEEeC-CEEEEEecC
Confidence            8899999999999999999763   23344433345799999986 457776654

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.73  E-value=1e-15  Score=151.75  Aligned_cols=189  Identities=11%  Similarity=0.079  Sum_probs=146.7

Q ss_pred             EecCCCCCCCceEEEeeCCCeEEEEec-CCEEEEEEcCCCeeEEeeccC-CCcccCeEECC-CCCEEEEeCCCc-EEEEc
Q 018474           45 KLGEGCVNHPEDVSVVVSKGALYTATR-DGWVKYFILHNETLVNWKHID-SQSLLGLTTTK-DGGVILCDNEKG-LLKVT  120 (355)
Q Consensus        45 ~~~~~~~~~p~~i~~d~~~g~l~~~~~-~g~i~~~~~~~g~~~~~~~~~-~~p~~gl~~d~-~g~L~v~~~~~g-l~~~~  120 (355)
                      .++...+..|.+|++|+.++.+|++.. +++|+++++.....+.+...+ ..|. ||++|. .++||+++...+ |.+++
T Consensus        30 ~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~-GlAvD~~~~~LY~tD~~~~~I~v~~  108 (628)
T 4a0p_A           30 AIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPE-GMAVDWLGKNLYWADTGTNRIEVSK  108 (628)
T ss_dssp             ECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCC-EEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcc-eEEEEeCCCEEEEEECCCCEEEEEe
Confidence            344455788999999987888887654 789999998554444444433 5799 999995 578999998754 66667


Q ss_pred             CCC--eEEEc-CCcCCcccEEEcc-CCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEE
Q 018474          121 EEG--VEAIV-PDASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIA  196 (355)
Q Consensus       121 ~~g--~~~~~-~~~~~~~~l~~d~-dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~  196 (355)
                      .+|  .+.+. .....|++|++|| +|.||++|...                .++|++.++++...+.+..++..|+||+
T Consensus       109 ~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~----------------~~~I~r~~~dG~~~~~l~~~~~~P~Gla  172 (628)
T 4a0p_A          109 LDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGG----------------KPKIDRAAMDGSERTTLVPNVGRANGLT  172 (628)
T ss_dssp             TTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSS----------------SCEEEEEETTSCSCEEEECSCSSEEEEE
T ss_pred             cCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCC----------------CCEEEEEeCCCCceEEEECCCCCcceEE
Confidence            666  55554 4458899999997 68999998641                4589999998777777778889999999


Q ss_pred             EeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474          197 LSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       197 ~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      ++++++.|||+++..++|.+++++|...   +.+.+.+ ..|.+++++. +++|+++..
T Consensus       173 lD~~~~~LY~aD~~~~~I~~~d~dG~~~---~v~~~~l-~~P~glav~~-~~ly~tD~~  226 (628)
T 4a0p_A          173 IDYAKRRLYWTDLDTNLIESSNMLGLNR---EVIADDL-PHPFGLTQYQ-DYIYWTDWS  226 (628)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSCSC---EEEEECC-SCEEEEEEET-TEEEEEETT
T ss_pred             EccccCEEEEEECCCCEEEEEcCCCCce---EEeeccC-CCceEEEEEC-CEEEEecCC
Confidence            9999889999999999999999987432   3444333 4699999986 789998865

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.72  E-value=1.6e-15  Score=138.77  Aligned_cols=231  Identities=9%  Similarity=-0.006  Sum_probs=163.4

Q ss_pred             CCCceEEEeeCCCeEEEEec-CCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEe-CCCcEEEEcC-CC-e-EE
Q 018474           52 NHPEDVSVVVSKGALYTATR-DGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCD-NEKGLLKVTE-EG-V-EA  126 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~-~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~-~~~gl~~~~~-~g-~-~~  126 (355)
                      ..|++++++  ++.+|++.. ++.|..+|+++++..........|. +++++++|+|||++ ..+.+.++|. ++ + ..
T Consensus        44 ~~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~-~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~  120 (328)
T 3dsm_A           44 DVAQSMVIR--DGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPR-YIHFLSDEKAYVTQIWDYRIFIINPKTYEITGY  120 (328)
T ss_dssp             SCEEEEEEE--TTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEE-EEEEEETTEEEEEEBSCSEEEEEETTTTEEEEE
T ss_pred             ccceEEEEE--CCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCc-EEEEeCCCeEEEEECCCCeEEEEECCCCeEEEE
Confidence            468899987  678998876 6889999999888744334456799 99998889999999 5567889984 66 3 33


Q ss_pred             EcCCc-----CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCC
Q 018474          127 IVPDA-----SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNE  201 (355)
Q Consensus       127 ~~~~~-----~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg  201 (355)
                      +....     ..|.++++ .++++|+++..                ..+.+.++|++++++.........|+++++++||
T Consensus       121 i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~----------------~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG  183 (328)
T 3dsm_A          121 IECPDMDMESGSTEQMVQ-YGKYVYVNCWS----------------YQNRILKIDTETDKVVDELTIGIQPTSLVMDKYN  183 (328)
T ss_dssp             EECTTCCTTTCBCCCEEE-ETTEEEEEECT----------------TCCEEEEEETTTTEEEEEEECSSCBCCCEECTTS
T ss_pred             EEcCCccccCCCcceEEE-ECCEEEEEcCC----------------CCCEEEEEECCCCeEEEEEEcCCCccceEEcCCC
Confidence            33221     27999999 67899999742                1457999999988876554445679999999999


Q ss_pred             CEEEEEeCCC----------CeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCC-EEEEeecCCchhhHhhhcchhH
Q 018474          202 DFVVVCESWK----------FRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGS-FWIGLIKMNQTGVRAIQKCREK  270 (355)
Q Consensus       202 ~~l~v~~~~~----------~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~  270 (355)
                      + +|++....          +.|++++.++.+..  +.+.-.....|.+++++++|+ +|++..                
T Consensus       184 ~-l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~--~~~~~~~g~~p~~la~~~d~~~lyv~~~----------------  244 (328)
T 3dsm_A          184 K-MWTITDGGYEGSPYGYEAPSLYRIDAETFTVE--KQFKFKLGDWPSEVQLNGTRDTLYWINN----------------  244 (328)
T ss_dssp             E-EEEEBCCBCTTCSSCBCCCEEEEEETTTTEEE--EEEECCTTCCCEEEEECTTSCEEEEESS----------------
T ss_pred             C-EEEEECCCccCCccccCCceEEEEECCCCeEE--EEEecCCCCCceeEEEecCCCEEEEEcc----------------
Confidence            7 88887654          78999997543221  112101122589999998775 777653                


Q ss_pred             HHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEE-EEECCCCCcccceeEEEEe--CCEEEEee----cCCCeEEEe
Q 018474          271 WELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIR-DFNDPDATYISFVTSAAEF--DGNLYLAS----LQSNFIGIL  343 (355)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~-~~~~~~g~~~~~~~~~~~~--~g~L~v~~----~~~~~i~~~  343 (355)
                                             .|+++|.++++... .+ .+.+  ...+.+++.+  +++||+++    ..++.|.++
T Consensus       245 -----------------------~v~~~d~~t~~~~~~~~-~~~~--~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~  298 (328)
T 3dsm_A          245 -----------------------DIWRMPVEADRVPVRPF-LEFR--DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRY  298 (328)
T ss_dssp             -----------------------SEEEEETTCSSCCSSCS-BCCC--SSCEEEEEECTTTCCEEEEECTTSSSEEEEEEE
T ss_pred             -----------------------EEEEEECCCCceeeeee-ecCC--CCceEEEEEcCCCCeEEEEcccccccCCEEEEE
Confidence                                   28889985565421 11 1111  2356667664  69999999    778999999


Q ss_pred             eCCC
Q 018474          344 PLDG  347 (355)
Q Consensus       344 ~~~~  347 (355)
                      +...
T Consensus       299 d~~g  302 (328)
T 3dsm_A          299 SPQG  302 (328)
T ss_dssp             CTTC
T ss_pred             CCCC
Confidence            8764

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.71  E-value=6.2e-15  Score=138.65  Aligned_cols=223  Identities=13%  Similarity=0.129  Sum_probs=163.1

Q ss_pred             CCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECC-CCCEEEEeCCC-cEEEEcCC-----C-eEEE-cCCcCC
Q 018474           63 KGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTK-DGGVILCDNEK-GLLKVTEE-----G-VEAI-VPDASF  133 (355)
Q Consensus        63 ~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~-~g~L~v~~~~~-gl~~~~~~-----g-~~~~-~~~~~~  133 (355)
                      ...|+++. ...|++++........+......|. +|++|. +++||+++... .|++++.+     . .+.+ ......
T Consensus        83 ~~~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~-~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~  160 (400)
T 3p5b_L           83 IAYLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVV-ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQA  160 (400)
T ss_dssp             SCEEEEEE-TTEEEEECTTSCSCEEEECSCSCEE-EEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSC
T ss_pred             cceeEEec-cceeEEEccCCcceeEeccccCcce-EEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCC
Confidence            34555554 4679999987666666555566788 999995 67899999764 47777743     2 2333 334478


Q ss_pred             cccEEEcc-CCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee-ccccccccEEEeCCCCEEEEEeCC-
Q 018474          134 TNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFYFANGIALSKNEDFVVVCESW-  210 (355)
Q Consensus       134 ~~~l~~d~-dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~-~~~~~pngi~~~~dg~~l~v~~~~-  210 (355)
                      |.++++|. .++||++|..                 .+.|.+++++++..+.+. ..+..|++|+++|.+..+||++.. 
T Consensus       161 p~glavD~~~~~lY~~d~~-----------------~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~  223 (400)
T 3p5b_L          161 PDGLAVDWIHSNIYWTDSV-----------------LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT  223 (400)
T ss_dssp             EEEEEEETTTTEEEEEETT-----------------TTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSS
T ss_pred             cccEEEEecCCceEEEECC-----------------CCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCC
Confidence            99999997 6799999876                 468999999877665554 467889999999988889999976 


Q ss_pred             CCeEEEEEeCCCCCcceeEecccCCCCcCceEECC-CCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCC
Q 018474          211 KFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAP-DGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGS  289 (355)
Q Consensus       211 ~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~-~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (355)
                      ..+|++++++|...   +.+....-..|.++++|. .++||+++...                                 
T Consensus       224 ~~~I~~~~~dG~~~---~~~~~~~l~~P~glavd~~~~~lY~aD~~~---------------------------------  267 (400)
T 3p5b_L          224 PAKIKKGGLNGVDI---YSLVTENIQWPNGITLDLLSGRLYWVDSKL---------------------------------  267 (400)
T ss_dssp             SCCEEEEETTSCSC---EEEECSSCSCEEEEEEETTTTEEEEEETTT---------------------------------
T ss_pred             CCEEEEEeCCCCcc---EEEEECCCCceEEEEEEeCCCEEEEEECCC---------------------------------
Confidence            47899999876422   233322224699999994 56899988542                                 


Q ss_pred             CCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeCCEEEEeecCCCeEEEeeC
Q 018474          290 DAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPL  345 (355)
Q Consensus       290 ~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~  345 (355)
                         ..|.+++. +|...+.+....+. ...+.++...+++||+++..+++|.+++.
T Consensus       268 ---~~I~~~d~-dG~~~~~~~~~~~~-l~~P~gl~v~~~~lywtd~~~~~V~~~~~  318 (400)
T 3p5b_L          268 ---HSISSIDV-NGGNRKTILEDEKR-LAHPFSLAVFEDKVFWTDIINEAIFSANR  318 (400)
T ss_dssp             ---TEEEEEET-TSCCCEEEEECSST-TSSEEEEEEETTEEEEEESSSCSEEEEES
T ss_pred             ---CEEEEEeC-CCCccEEEEeCCCC-CCCCEEEEEeCCEEEEecCCCCeEEEEEc
Confidence               36999999 77655544332222 34566777789999999999999999973

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.71  E-value=1.3e-15  Score=135.89  Aligned_cols=182  Identities=13%  Similarity=0.225  Sum_probs=134.2

Q ss_pred             CCCCCceEEEeeCCCeEEEEec--CCEEEEEEcCCCeeE-Eeecc-CCCcccCeEECCCCCEEEEeCC-CcEEEEcCCC-
Q 018474           50 CVNHPEDVSVVVSKGALYTATR--DGWVKYFILHNETLV-NWKHI-DSQSLLGLTTTKDGGVILCDNE-KGLLKVTEEG-  123 (355)
Q Consensus        50 ~~~~p~~i~~d~~~g~l~~~~~--~g~i~~~~~~~g~~~-~~~~~-~~~p~~gl~~d~~g~L~v~~~~-~gl~~~~~~g-  123 (355)
                      .+..|.+++++..++.+|++..  ++.|.++++ +++.. .+... ...|. ++++|++|++|+++.. +.+++++.+| 
T Consensus        75 ~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~-~i~~~~~g~l~v~~~~~~~i~~~~~~g~  152 (286)
T 1q7f_A           75 QLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-YGQFVRKFGATILQHPR-GVTVDNKGRIIVVECKVMRVIIFDQNGN  152 (286)
T ss_dssp             CBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-TSCEEEEECTTTCSCEE-EEEECTTSCEEEEETTTTEEEEECTTSC
T ss_pred             cccCceEEEEEcCCCeEEEEcCCCCCEEEEECC-CCcEEEEecCccCCCce-EEEEeCCCCEEEEECCCCEEEEEcCCCC
Confidence            3567999999547889999884  789999996 55543 33222 24688 9999999999999865 4588888766 


Q ss_pred             -eEEEcC--CcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecc--ccccccEEEe
Q 018474          124 -VEAIVP--DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG--FYFANGIALS  198 (355)
Q Consensus       124 -~~~~~~--~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~--~~~pngi~~~  198 (355)
                       +..+..  ....|++++++++|++|+++..                 .+.|++||+++..+..+...  +..|.+++++
T Consensus       153 ~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~-----------------~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d  215 (286)
T 1q7f_A          153 VLHKFGCSKHLEFPNGVVVNDKQEIFISDNR-----------------AHCVKVFNYEGQYLRQIGGEGITNYPIGVGIN  215 (286)
T ss_dssp             EEEEEECTTTCSSEEEEEECSSSEEEEEEGG-----------------GTEEEEEETTCCEEEEESCTTTSCSEEEEEEC
T ss_pred             EEEEeCCCCccCCcEEEEECCCCCEEEEECC-----------------CCEEEEEcCCCCEEEEEccCCccCCCcEEEEC
Confidence             444432  2367999999999999999754                 45899999876555554322  4679999999


Q ss_pred             CCCCEEEEEeCCCC-eEEEEEeCCCCCcceeEecccCC-CCcCceEECCCCCEEEEee
Q 018474          199 KNEDFVVVCESWKF-RCRRYWLKGDRAGILDAFIENLP-GGPDNINLAPDGSFWIGLI  254 (355)
Q Consensus       199 ~dg~~l~v~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~-g~p~~i~~d~~G~lwv~~~  254 (355)
                      ++|+ +|+++...+ +|.+|+.++...   ..+..... ..|.+++++++|++||+..
T Consensus       216 ~~G~-l~v~~~~~~~~i~~~~~~g~~~---~~~~~~~~~~~~~~i~~~~~g~l~vs~~  269 (286)
T 1q7f_A          216 SNGE-ILIADNHNNFNLTIFTQDGQLI---SALESKVKHAQCFDVALMDDGSVVLASK  269 (286)
T ss_dssp             TTCC-EEEEECSSSCEEEEECTTSCEE---EEEEESSCCSCEEEEEEETTTEEEEEET
T ss_pred             CCCC-EEEEeCCCCEEEEEECCCCCEE---EEEcccCCCCcceeEEECCCCcEEEECC
Confidence            9997 999998776 999998755322   22221211 2477899999999999963

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.70  E-value=7.3e-15  Score=133.83  Aligned_cols=220  Identities=13%  Similarity=0.057  Sum_probs=158.0

Q ss_pred             eEEEEecCCEEEEEEcCCCe--eEEeeccCCCcccCeEECC-CCCEEEEeCCC-cEEEEcCCC--e--EEEcCCcCCccc
Q 018474           65 ALYTATRDGWVKYFILHNET--LVNWKHIDSQSLLGLTTTK-DGGVILCDNEK-GLLKVTEEG--V--EAIVPDASFTND  136 (355)
Q Consensus        65 ~l~~~~~~g~i~~~~~~~g~--~~~~~~~~~~p~~gl~~d~-~g~L~v~~~~~-gl~~~~~~g--~--~~~~~~~~~~~~  136 (355)
                      .|+++. ...|.+++.....  ..........+. ++.+|. +++||+++... .|++++.+|  .  ..+......|.+
T Consensus         6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~~-~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~g   83 (318)
T 3sov_A            6 LLLYAN-RRDLRLVDATNGKENATIVVGGLEDAA-AVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDG   83 (318)
T ss_dssp             EEEEEC-EEEEEEEETTCTTSCCEEEEEEEEEEE-EEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCE
T ss_pred             EEEEEc-cCeEEEEECCCCceEEEEEecCCCccE-EEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccE
Confidence            455554 3569999986542  222222234577 888885 68899999774 477887544  2  233344478999


Q ss_pred             EEEcc-CCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee-ccccccccEEEeCCCCEEEEEeCC-CCe
Q 018474          137 VIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFYFANGIALSKNEDFVVVCESW-KFR  213 (355)
Q Consensus       137 l~~d~-dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~-~~~~~pngi~~~~dg~~l~v~~~~-~~~  213 (355)
                      +++|+ +|+||++|..                 .+++.++++++...+.+. ..+..|+|++++|++..+||++.. ..+
T Consensus        84 lavd~~~g~ly~~d~~-----------------~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~  146 (318)
T 3sov_A           84 LACDWLGEKLYWTDSE-----------------TNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPK  146 (318)
T ss_dssp             EEEETTTTEEEEEETT-----------------TTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCE
T ss_pred             EEEEcCCCeEEEEECC-----------------CCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCE
Confidence            99996 6799999876                 468999998766555554 567889999999988889999975 689


Q ss_pred             EEEEEeCCCCCcceeEecccCCCCcCceEECC-CCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCc
Q 018474          214 CRRYWLKGDRAGILDAFIENLPGGPDNINLAP-DGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAG  292 (355)
Q Consensus       214 i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~-~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (355)
                      |++++.+|..   .+.+....-..|+++++|. +|+||+++...                                    
T Consensus       147 I~r~~~dG~~---~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~------------------------------------  187 (318)
T 3sov_A          147 IERAGMDGSS---RFIIINSEIYWPNGLTLDYEEQKLYWADAKL------------------------------------  187 (318)
T ss_dssp             EEEEETTSCS---CEEEECSSCSCEEEEEEETTTTEEEEEETTT------------------------------------
T ss_pred             EEEEEcCCCC---eEEEEECCCCCccEEEEeccCCEEEEEECCC------------------------------------
Confidence            9999987642   2233322224699999996 56899998542                                    


Q ss_pred             eEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeCCEEEEeecCCCeEEEeeCC
Q 018474          293 ARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLD  346 (355)
Q Consensus       293 ~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~  346 (355)
                      ..|.+++. +|...+.+....   ...+.+++.+++.||++...+.+|.+++..
T Consensus       188 ~~I~~~d~-dG~~~~~~~~~~---~~~P~glav~~~~lywtd~~~~~V~~~~~~  237 (318)
T 3sov_A          188 NFIHKSNL-DGTNRQAVVKGS---LPHPFALTLFEDILYWTDWSTHSILACNKY  237 (318)
T ss_dssp             TEEEEEET-TSCSCEEEECSC---CSCEEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred             CEEEEEcC-CCCceEEEecCC---CCCceEEEEeCCEEEEEecCCCeEEEEECC
Confidence            46999999 776555554312   345667777899999999999999999874

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.69  E-value=3.2e-15  Score=140.61  Aligned_cols=184  Identities=13%  Similarity=0.111  Sum_probs=134.6

Q ss_pred             CCCCceEEEeeCCCeEEEEec-CCEEEEEEcCCC----eeEEeec-cCCCcccCeEECC-CCCEEEEeCCC-cEEEEcCC
Q 018474           51 VNHPEDVSVVVSKGALYTATR-DGWVKYFILHNE----TLVNWKH-IDSQSLLGLTTTK-DGGVILCDNEK-GLLKVTEE  122 (355)
Q Consensus        51 ~~~p~~i~~d~~~g~l~~~~~-~g~i~~~~~~~g----~~~~~~~-~~~~p~~gl~~d~-~g~L~v~~~~~-gl~~~~~~  122 (355)
                      +..|.+|++|+.++.||++.. +++|+++++...    ....+.. ....|. ||++|. .++||+++... .|.+++.+
T Consensus       111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~-glavD~~~~~lY~~d~~~~~I~~~~~~  189 (400)
T 3p5b_L          111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD-GLAVDWIHSNIYWTDSVLGTVSVADTK  189 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE-EEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred             cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc-cEEEEecCCceEEEECCCCeEEEEeCC
Confidence            688999999977888887654 789999998541    2233332 345789 999996 78899999874 46677766


Q ss_pred             C--eEEEc-CCcCCcccEEEcc-CCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEe-eccccccccEEE
Q 018474          123 G--VEAIV-PDASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL-HEGFYFANGIAL  197 (355)
Q Consensus       123 g--~~~~~-~~~~~~~~l~~d~-dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~-~~~~~~pngi~~  197 (355)
                      |  .+.+. .....|++|++|+ +|.||++|...                .+.|+++++++...+.+ ..++..|+||++
T Consensus       190 g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~----------------~~~I~~~~~dG~~~~~~~~~~l~~P~glav  253 (400)
T 3p5b_L          190 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT----------------PAKIKKGGLNGVDIYSLVTENIQWPNGITL  253 (400)
T ss_dssp             TCSEEEEEECSSCCEEEEEEETTTTEEEEEECSS----------------SCCEEEEETTSCSCEEEECSSCSCEEEEEE
T ss_pred             CCceEEEEeCCCCCcceEEEecccCeEEEEeCCC----------------CCEEEEEeCCCCccEEEEECCCCceEEEEE
Confidence            6  44443 3447899999998 57999998641                24799999876655544 356789999999


Q ss_pred             eCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEeccc--CCCCcCceEECCCCCEEEEeec
Q 018474          198 SKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIEN--LPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       198 ~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      +++++.|||+++..++|++++++|..   .+.+...  .-..|.+++++. +++|++...
T Consensus       254 d~~~~~lY~aD~~~~~I~~~d~dG~~---~~~~~~~~~~l~~P~gl~v~~-~~lywtd~~  309 (400)
T 3p5b_L          254 DLLSGRLYWVDSKLHSISSIDVNGGN---RKTILEDEKRLAHPFSLAVFE-DKVFWTDII  309 (400)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSCC---CEEEEECSSTTSSEEEEEEET-TEEEEEESS
T ss_pred             EeCCCEEEEEECCCCEEEEEeCCCCc---cEEEEeCCCCCCCCEEEEEeC-CEEEEecCC
Confidence            99999999999999999999997742   2333322  224689999965 567777754

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.69  E-value=1.2e-14  Score=131.94  Aligned_cols=218  Identities=15%  Similarity=0.176  Sum_probs=146.4

Q ss_pred             CCeEEEEecCCEEEEEEcCCCeeEE-eeccCCCcccCeEECCCCCEEEEeCCCcEEEEcCCC--eEEEcCCcCCcccEEE
Q 018474           63 KGALYTATRDGWVKYFILHNETLVN-WKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEEG--VEAIVPDASFTNDVIA  139 (355)
Q Consensus        63 ~g~l~~~~~~g~i~~~~~~~g~~~~-~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~~g--~~~~~~~~~~~~~l~~  139 (355)
                      ++.+|+++.++.|+++++. |+... +........ .++.|++|+||+++..+++++++..|  ..........+.++++
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~-~~~~~~~g~l~vgt~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~  184 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYA-TPIVSEDGTIYVGSNDNYLYAINPDGTEKWRFKTNDAITSAASI  184 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCS-CCEECTTSCEEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEE
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceee-eeEEcCCCEEEEEcCCCEEEEECCCCCEeEEEecCCCceeeeEE
Confidence            7889999989999999986 65432 222223345 78889899999999778999999557  3333333356778899


Q ss_pred             ccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEe
Q 018474          140 ASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWL  219 (355)
Q Consensus       140 d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~  219 (355)
                      |++|+||++.                    ++++++|+++...............++.+++|. +|++.. .++|.+++.
T Consensus       185 d~~g~l~v~t--------------------~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~-~~gl~~~~~  242 (330)
T 3hxj_A          185 GKDGTIYFGS--------------------DKVYAINPDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSL-DGHLYAINP  242 (330)
T ss_dssp             CTTCCEEEES--------------------SSEEEECTTSCEEEEECCSSCCCSCCEECTTSC-EEEEET-TTEEEEECT
T ss_pred             cCCCEEEEEe--------------------CEEEEECCCCcEEEEEccCCcceeceEECCCCe-EEEEcC-CCeEEEECC
Confidence            9999999974                    368999953333322222234466788888886 888753 579999975


Q ss_pred             CCCCCcceeEecccCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEe
Q 018474          220 KGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVD  299 (355)
Q Consensus       220 ~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  299 (355)
                      ++...   ..+. .....+..+.+|++|++|+++..                                     ++++++|
T Consensus       243 ~g~~~---~~~~-~~~~~~~~~~~~~~g~l~v~t~~-------------------------------------ggl~~~d  281 (330)
T 3hxj_A          243 DGTEK---WRFK-TGKRIESSPVIGNTDTIYFGSYD-------------------------------------GHLYAIN  281 (330)
T ss_dssp             TSCEE---EEEE-CSSCCCSCCEECTTSCEEEECTT-------------------------------------CEEEEEC
T ss_pred             CCCEe---EEee-CCCCccccceEcCCCeEEEecCC-------------------------------------CCEEEEC
Confidence            44322   1121 12234556788889999999865                                     5799999


Q ss_pred             CCCCeEEEEEECCCCCcccceeEEEE-eCCEEEEeecCCCeEEEeeCCCCCCC
Q 018474          300 GNDGKIIRDFNDPDATYISFVTSAAE-FDGNLYLASLQSNFIGILPLDGPEPQ  351 (355)
Q Consensus       300 ~~~g~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~~~~  351 (355)
                      + +|+....+..+..    .+.+++. .+|+||+++. +..+...+.+...++
T Consensus       282 ~-~g~~~~~~~~~~~----~~~~~~~d~~g~l~~gt~-~G~~~~~~~~~~~~~  328 (330)
T 3hxj_A          282 P-DGTEKWNFETGSW----IIATPVIDENGTIYFGTR-NGKFYALFNLEHHHH  328 (330)
T ss_dssp             T-TSCEEEEEECSSC----CCSCCEECTTCCEEEECT-TSCEEEEEC------
T ss_pred             C-CCcEEEEEEcCCc----cccceEEcCCCEEEEEcC-CCeEEEEeccccccc
Confidence            9 9998877765432    3334555 6799999997 566766666655543

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.69  E-value=1.1e-15  Score=139.26  Aligned_cols=180  Identities=14%  Similarity=0.069  Sum_probs=129.8

Q ss_pred             CCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeecc-----CCCcccCeEECC-CCCEEEEeCC------------
Q 018474           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI-----DSQSLLGLTTTK-DGGVILCDNE------------  113 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~-----~~~p~~gl~~d~-~g~L~v~~~~------------  113 (355)
                      ..|.+|+++++++.||+++..++|+++++.+++.+.+...     ...|+ ++++|+ +|+|||++..            
T Consensus        80 ~~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~-~i~~d~~~G~l~v~d~~~~~~~~~~~~~~  158 (322)
T 2fp8_A           80 GRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLY-AVTVDQRTGIVYFTDVSTLYDDRGVQQIM  158 (322)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEE-EEEECTTTCCEEEEESCSSCCTTCHHHHH
T ss_pred             CCCceEEEcCCCCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccc-eEEEecCCCEEEEECCcccccccccceeh
Confidence            4689999994378999998878899999877766555321     13588 999999 9999999864            


Q ss_pred             ------CcEEEEcC-CC-eEEEcCCcCCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCC---Ce
Q 018474          114 ------KGLLKVTE-EG-VEAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKL---KE  181 (355)
Q Consensus       114 ------~gl~~~~~-~g-~~~~~~~~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~---~~  181 (355)
                            ++++++++ ++ ++.+......|++++++++|+ ||+++..                 .++|++|+.++   ++
T Consensus       159 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~-----------------~~~I~~~~~~~~~~~~  221 (322)
T 2fp8_A          159 DTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFL-----------------SHQIVKYWLEGPKKGT  221 (322)
T ss_dssp             HHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGG-----------------GTEEEEEESSSTTTTC
T ss_pred             cccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCC-----------------CCeEEEEECCCCcCCc
Confidence                  35899986 56 665544457899999999985 9999865                 45799998764   34


Q ss_pred             EEEeeccccccccEEEeCCCCEEEEEeCC----------CCeEEEEEeCCCCCcceeEecc--cC-CCCcCceEECCCCC
Q 018474          182 TTVLHEGFYFANGIALSKNEDFVVVCESW----------KFRCRRYWLKGDRAGILDAFIE--NL-PGGPDNINLAPDGS  248 (355)
Q Consensus       182 ~~~~~~~~~~pngi~~~~dg~~l~v~~~~----------~~~i~~~~~~~~~~~~~~~~~~--~~-~g~p~~i~~d~~G~  248 (355)
                      .+.+..... |+|++++++|+ +|+++..          .++|.+|+.++...   +.+..  .. ...+.++.. .+|+
T Consensus       222 ~~~~~~~~g-P~gi~~d~~G~-l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~---~~~~~~~g~~~~~~~~~~~-~~g~  295 (322)
T 2fp8_A          222 AEVLVKIPN-PGNIKRNADGH-FWVSSSEELDGNMHGRVDPKGIKFDEFGNIL---EVIPLPPPFAGEHFEQIQE-HDGL  295 (322)
T ss_dssp             EEEEEECSS-EEEEEECTTSC-EEEEEEEETTSSTTSCEEEEEEEECTTSCEE---EEEECCTTTTTSCCCEEEE-ETTE
T ss_pred             cceEEeCCC-CCCeEECCCCC-EEEEecCcccccccCCCccEEEEECCCCCEE---EEEECCCCCccccceEEEE-eCCE
Confidence            444443223 99999999998 9999865          46799998765322   22211  11 123566666 4689


Q ss_pred             EEEEeec
Q 018474          249 FWIGLIK  255 (355)
Q Consensus       249 lwv~~~~  255 (355)
                      |||++..
T Consensus       296 L~v~~~~  302 (322)
T 2fp8_A          296 LYIGTLF  302 (322)
T ss_dssp             EEEECSS
T ss_pred             EEEeecC
Confidence            9999754

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=99.69  E-value=1.4e-14  Score=134.04  Aligned_cols=256  Identities=14%  Similarity=0.192  Sum_probs=163.4

Q ss_pred             ceEecCCCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeec------cCCCcccCeEECCC----CCEEEEeC
Q 018474           43 LTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH------IDSQSLLGLTTTKD----GGVILCDN  112 (355)
Q Consensus        43 ~~~~~~~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~------~~~~p~~gl~~d~~----g~L~v~~~  112 (355)
                      .+.+..+ +..|++|+++ .+|.||++...|+|++++. +|+ +.+..      ....|. ||+++++    |.|||+..
T Consensus        21 ~~~va~~-l~~P~~ia~~-pdG~l~V~e~~g~I~~~d~-~G~-~~~~~~~v~~~g~~g~~-gia~~pdf~~~g~lyv~~~   95 (354)
T 3a9g_A           21 ISEVASD-LEVPWSIAPL-GGGRYLVTERPGRLVLISP-SGK-KLVASFDVANVGEAGLL-GLALHPEFPKKSWVYLYAS   95 (354)
T ss_dssp             EEEEECS-CSCEEEEEEE-ETTEEEEEETTTEEEEECS-SCE-EEEEECCCCCSTTCSEE-EEEECTTTTTSCEEEEEEE
T ss_pred             EEEEeCC-CCCCeEEEEc-CCCeEEEEeCCCEEEEEeC-CCc-eEeeccceeecCCCcee-eEEeCCCCCcCCEEEEEEe
Confidence            3556655 7899999999 5778999998999999975 666 44431      234688 9999986    89999875


Q ss_pred             C--------CcEEEEc-C-C-C-e---EEEcC----C-cCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeE
Q 018474          113 E--------KGLLKVT-E-E-G-V---EAIVP----D-ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQL  172 (355)
Q Consensus       113 ~--------~gl~~~~-~-~-g-~---~~~~~----~-~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l  172 (355)
                      .        ..|++++ . . + +   +.+..    . ...+++|++++||.||+++.... . ......  .....|.|
T Consensus        96 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~-~-~~~~~d--~~~~~G~I  171 (354)
T 3a9g_A           96 YFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAA-D-PRLAQD--LSSLAGKI  171 (354)
T ss_dssp             EECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTT-C-GGGGTC--TTCCSSEE
T ss_pred             ccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCC-C-CccccC--CCCCCeEE
Confidence            3        4688887 2 2 1 1   22211    1 15689999999999999975411 0 000001  12335789


Q ss_pred             EEEeCCCC--------eEEEeeccccccccEEEeCCCCEEEEEeCCCCe---EEEEEeCCCCCcc------------eeE
Q 018474          173 RKYDPKLK--------ETTVLHEGFYFANGIALSKNEDFVVVCESWKFR---CRRYWLKGDRAGI------------LDA  229 (355)
Q Consensus       173 ~~~dp~~~--------~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~---i~~~~~~~~~~~~------------~~~  229 (355)
                      +|+++++.        ..+.+..++.+|+|++++++...||+++...++   |.++. .+...+.            ...
T Consensus       172 ~ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~-~G~nyGwp~~~g~~~~~~~~~p  250 (354)
T 3a9g_A          172 LRVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIIL-KGGNYGWPLATGKAGRGEFVDP  250 (354)
T ss_dssp             EEECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEEC-TTCBCCTTTCCSCCCCTTSCCC
T ss_pred             EEEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEec-CCCcCCCCcccCCCCCCCCcCC
Confidence            99999754        345667788999999999943349999987655   44443 2221110            001


Q ss_pred             ecc--cCCCCcCceEE-------CCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeC
Q 018474          230 FIE--NLPGGPDNINL-------APDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDG  300 (355)
Q Consensus       230 ~~~--~~~g~p~~i~~-------d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  300 (355)
                      ...  .....|.++++       +.+|++|++....                                    +.|.+++.
T Consensus       251 ~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~------------------------------------~~v~~~~~  294 (354)
T 3a9g_A          251 VIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRG------------------------------------SMLAAVNF  294 (354)
T ss_dssp             SEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTT------------------------------------TEEEEEEE
T ss_pred             EeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCC------------------------------------CEEEEEEE
Confidence            110  11234788887       4678999998652                                    35777776


Q ss_pred             C-CCeEE--EEEECCCCCcccceeEEEEe-CCEEEEeecC-CC---------eEEEeeCCC
Q 018474          301 N-DGKII--RDFNDPDATYISFVTSAAEF-DGNLYLASLQ-SN---------FIGILPLDG  347 (355)
Q Consensus       301 ~-~g~~~--~~~~~~~g~~~~~~~~~~~~-~g~L~v~~~~-~~---------~i~~~~~~~  347 (355)
                      + +|+..  +.+-.  +. ...+..++.+ +|.||+++.. ..         +|.|+...+
T Consensus       295 ~~~g~~~~~~~~~~--~~-~~rp~~v~~~pDG~lyv~~~~~~G~g~~~~~~g~i~ri~~~g  352 (354)
T 3a9g_A          295 GDNMEVRKISTFFK--NV-FGRLRDVVIDDDGGILISTSNRDGRGSLRAGDDKILKIVSEQ  352 (354)
T ss_dssp             CGGGCEEEEEEECT--TT-SCCEEEEEECTTSCEEEEECTTSSSSCCCTTCSCEEEEEETT
T ss_pred             CCCCcccceeeecc--CC-CCCeeEEEECCCCcEEEEEeCCCCCcCCCCCCCEEEEEecCC
Confidence            2 24432  23322  11 2346667765 5899999863 33         899987654

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.68  E-value=8.6e-15  Score=131.41  Aligned_cols=178  Identities=12%  Similarity=0.142  Sum_probs=129.8

Q ss_pred             CCCCceEEEeeCCCeEEEEec-CCEEEEEEcCCCeeEEeecc-----CCCcccCeEECCCCCEEEEeC------------
Q 018474           51 VNHPEDVSVVVSKGALYTATR-DGWVKYFILHNETLVNWKHI-----DSQSLLGLTTTKDGGVILCDN------------  112 (355)
Q Consensus        51 ~~~p~~i~~d~~~g~l~~~~~-~g~i~~~~~~~g~~~~~~~~-----~~~p~~gl~~d~~g~L~v~~~------------  112 (355)
                      ...|.+++++ .+|.+|++.. +++|.++++++|+.+.+...     ...|. ++++|++|++|+++.            
T Consensus        68 ~~~~~~l~~~-~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~-~i~~d~~G~l~vtd~~~g~~~~~~~~~  145 (296)
T 3e5z_A           68 SHHQNGHCLN-KQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPN-DVCLAPDGSLWFSDPTYGIDKPEEGYG  145 (296)
T ss_dssp             CSSEEEEEEC-TTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCC-CEEECTTSCEEEEECSHHHHCGGGSSC
T ss_pred             CCCcceeeEC-CCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCC-CEEECCCCCEEEECCcccccccccccc
Confidence            3568999999 5777898876 48899999988887665321     24578 899999999999753            


Q ss_pred             ------CCcEEEEcCCC-eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCC-CCeE--
Q 018474          113 ------EKGLLKVTEEG-VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPK-LKET--  182 (355)
Q Consensus       113 ------~~gl~~~~~~g-~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~-~~~~--  182 (355)
                            ..+|++++++| ++.+......|++++++++|++++++..                 .+.+++|+.+ ++++  
T Consensus       146 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~-----------------~~~i~~~~~~~~g~~~~  208 (296)
T 3e5z_A          146 GEMELPGRWVFRLAPDGTLSAPIRDRVKPNGLAFLPSGNLLVSDTG-----------------DNATHRYCLNARGETEY  208 (296)
T ss_dssp             CCCCSSSCEEEEECTTSCEEEEECCCSSEEEEEECTTSCEEEEETT-----------------TTEEEEEEECSSSCEEE
T ss_pred             ccccCCCcEEEEECCCCCEEEeecCCCCCccEEECCCCCEEEEeCC-----------------CCeEEEEEECCCCcCcC
Confidence                  24799998667 6666555578999999999987687754                 4578888865 4554  


Q ss_pred             --EEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEE-CCCC-CEEEEeec
Q 018474          183 --TVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINL-APDG-SFWIGLIK  255 (355)
Q Consensus       183 --~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~-d~~G-~lwv~~~~  255 (355)
                        +.+......|.+++++++|+ +|++.  .++|.+|+.++...   ..+. ...+ |.++++ .++| .||+++..
T Consensus       209 ~~~~~~~~~~~p~~i~~d~~G~-l~v~~--~~~v~~~~~~g~~~---~~~~-~~~~-~~~~~f~~~d~~~L~v~t~~  277 (296)
T 3e5z_A          209 QGVHFTVEPGKTDGLRVDAGGL-IWASA--GDGVHVLTPDGDEL---GRVL-TPQT-TSNLCFGGPEGRTLYMTVST  277 (296)
T ss_dssp             EEEEECCSSSCCCSEEEBTTSC-EEEEE--TTEEEEECTTSCEE---EEEE-CSSC-CCEEEEESTTSCEEEEEETT
T ss_pred             CCeEeeCCCCCCCeEEECCCCC-EEEEc--CCeEEEECCCCCEE---EEEE-CCCC-ceeEEEECCCCCEEEEEcCC
Confidence              22222345689999999998 88887  68999999864322   2222 2223 888888 4666 49998853

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.68  E-value=2.2e-14  Score=145.18  Aligned_cols=229  Identities=14%  Similarity=0.137  Sum_probs=165.3

Q ss_pred             eEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECC-CCCEEEEeCCCc-EEEEcCCC------eEEE
Q 018474           56 DVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTK-DGGVILCDNEKG-LLKVTEEG------VEAI  127 (355)
Q Consensus        56 ~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~-~g~L~v~~~~~g-l~~~~~~g------~~~~  127 (355)
                      +.+++ ....|+++.. ..|++++...+....+......|. +|++|. +++||+++...+ |++++.+|      .+.+
T Consensus       389 C~~~~-~~p~Ll~an~-~~Ir~i~l~~~~~~~l~~~~~~~~-gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~v  465 (791)
T 3m0c_C          389 CKAVG-SIAYLFFTNR-HEVRKMTLDRSEYTSLIPNLRNVV-ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV  465 (791)
T ss_dssp             CEETT-SCCEEEEECB-SSEEEECTTSCCCEEEECSCSSEE-EEEEETTTTEEEEEETTTTEEEEEEC--------CEEE
T ss_pred             eeecc-cccccccccc-cceeEeeccCCcceeeecCCCceE-EEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEE
Confidence            33344 3445666554 458888886666666655556788 999996 678999998754 77777432      2333


Q ss_pred             cC-CcCCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee-ccccccccEEEeCCCCEE
Q 018474          128 VP-DASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFYFANGIALSKNEDFV  204 (355)
Q Consensus       128 ~~-~~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~-~~~~~pngi~~~~dg~~l  204 (355)
                      .. ....|.+|++|..+ +||++|..                 .++|.++++++...+++. ..+..|+||++++.+..|
T Consensus       466 i~~~l~~P~GLAvD~~~~~LY~tD~~-----------------~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~L  528 (791)
T 3m0c_C          466 ISRDIQAPDGLAVDWIHSNIYWTDSV-----------------LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFM  528 (791)
T ss_dssp             ECSSCSCCCEEEEETTTTEEEEEETT-----------------TTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEE
T ss_pred             EecCCCCcceeeeeecCCcEEEEecC-----------------CCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCE
Confidence            33 45789999999765 99999976                 568999999877666554 467789999999998889


Q ss_pred             EEEeCCC-CeEEEEEeCCCCCcceeEecccCCCCcCceEEC-CCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhh
Q 018474          205 VVCESWK-FRCRRYWLKGDRAGILDAFIENLPGGPDNINLA-PDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLIS  282 (355)
Q Consensus       205 ~v~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d-~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (355)
                      ||++.+. .+|.+++++|..   .+.++...-..|.+|++| ..|+||++....                          
T Consensus       529 YwtD~g~~~~I~~~~~dG~~---~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~--------------------------  579 (791)
T 3m0c_C          529 YWTDWGTPAKIKKGGLNGVD---IYSLVTENIQWPNGITLDLLSGRLYWVDSKL--------------------------  579 (791)
T ss_dssp             EEEECSSSCEEEEEETTSCC---EEEEECSSCSCEEEEEEETTTTEEEEEETTT--------------------------
T ss_pred             EEecCCCCCeEEEEecCCCc---eEEEEeCCCCCceEEEEecCCCeEEEEeCCC--------------------------
Confidence            9999876 899999987642   233333222469999999 567899998541                          


Q ss_pred             cccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeCCEEEEeecCCCeEEEeeC
Q 018474          283 LLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPL  345 (355)
Q Consensus       283 ~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~  345 (355)
                                ..|.+++. +|.....+....+. .....++...+++||+++..+++|.+++.
T Consensus       580 ----------~~I~~~d~-dG~~~~~v~~~~~~-l~~P~glav~~~~lYwtD~~~~~I~~~dk  630 (791)
T 3m0c_C          580 ----------HSISSIDV-NGGNRKTILEDEKR-LAHPFSLAVFEDKVFWTDIINEAIFSANR  630 (791)
T ss_dssp             ----------TEEEEEET-TSCSCEEEEECTTT-TSSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred             ----------CcEEEEec-CCCceEEEecCCCc-cCCCCEEEEeCCEEEEEECCCCEEEEEeC
Confidence                      36999999 87655544332222 44566777788999999999999999974

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=99.67  E-value=1.9e-14  Score=129.43  Aligned_cols=186  Identities=12%  Similarity=0.067  Sum_probs=128.2

Q ss_pred             CCCCceEEEeeCCCeEEEEe-cCCEEEEEEcCCCeeEEeeccC----C----CcccCeEE---CCCCCEEEEeC------
Q 018474           51 VNHPEDVSVVVSKGALYTAT-RDGWVKYFILHNETLVNWKHID----S----QSLLGLTT---TKDGGVILCDN------  112 (355)
Q Consensus        51 ~~~p~~i~~d~~~g~l~~~~-~~g~i~~~~~~~g~~~~~~~~~----~----~p~~gl~~---d~~g~L~v~~~------  112 (355)
                      -..||++.+|+.++.+|+++ .++.|.++++.++....+....    +    .+. ||.+   |++|+||++..      
T Consensus        12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~s-Gl~~~~~D~~grL~vv~~~~~af~   90 (334)
T 2p9w_A           12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMS-GLSLLTHDNSKRLFAVMKNAKSFN   90 (334)
T ss_dssp             TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEE-EEEESSSSSCCEEEEEEEETTTTC
T ss_pred             ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceee-EEEEeccCCCCcEEEEEccccccc
Confidence            46899999997789999988 5899999999766554442111    1    467 9999   78999999532      


Q ss_pred             --------CCcEEEEc-C---CC--eEEEcC-------------CcCCcccEEEccCCcEEEEeCCCCCCCccccccccc
Q 018474          113 --------EKGLLKVT-E---EG--VEAIVP-------------DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAE  165 (355)
Q Consensus       113 --------~~gl~~~~-~---~g--~~~~~~-------------~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~  165 (355)
                              ...+++++ +   ++  +....-             ....+|++++|++|++|++++.              
T Consensus        91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~--------------  156 (334)
T 2p9w_A           91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFAL--------------  156 (334)
T ss_dssp             TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEE--------------
T ss_pred             ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCC--------------
Confidence                    24588999 4   46  222211             1135999999999999999764              


Q ss_pred             cCCC-CeEEEEeCCCCeEEEeec------cccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEec-cc--CC
Q 018474          166 GKPY-GQLRKYDPKLKETTVLHE------GFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFI-EN--LP  235 (355)
Q Consensus       166 ~~~~-g~l~~~dp~~~~~~~~~~------~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~-~~--~~  235 (355)
                         . +.|++++|++.....+..      ....+|||+++|||+.|++.++ .++|++++++.........-. ..  ..
T Consensus       157 ---~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~~pv~~~v~~~~~G~~~~~  232 (334)
T 2p9w_A          157 ---GMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVSKPYAWPEPVKINGDFGTL  232 (334)
T ss_dssp             ---SSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECSSSSCCCEECEESSCCCCC
T ss_pred             ---CCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCCCCcceeecccccCCcccc
Confidence               3 679999998765554321      1235789999999999999998 899999998632110111100 10  11


Q ss_pred             CCcCce-EECCCCCE-EEEeec
Q 018474          236 GGPDNI-NLAPDGSF-WIGLIK  255 (355)
Q Consensus       236 g~p~~i-~~d~~G~l-wv~~~~  255 (355)
                      ..|+++ ....+|++ +|+...
T Consensus       233 ~~~dgilp~~~~G~vllV~~~~  254 (334)
T 2p9w_A          233 SGTEKIVTVPVGNESVLVGARA  254 (334)
T ss_dssp             TTEEEEEEEEETTEEEEEEEET
T ss_pred             cCcccccccccCCEEEEEEcCC
Confidence            247885 55668887 666643

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.66  E-value=3.2e-14  Score=140.87  Aligned_cols=186  Identities=11%  Similarity=0.079  Sum_probs=139.3

Q ss_pred             CCCCCCceEEEeeCCCeEEEEec-CCEEEEEEcCCCeeEEeecc-CCCcccCeEECC-CCCEEEEeCCCc-EEEEcCCC-
Q 018474           49 GCVNHPEDVSVVVSKGALYTATR-DGWVKYFILHNETLVNWKHI-DSQSLLGLTTTK-DGGVILCDNEKG-LLKVTEEG-  123 (355)
Q Consensus        49 ~~~~~p~~i~~d~~~g~l~~~~~-~g~i~~~~~~~g~~~~~~~~-~~~p~~gl~~d~-~g~L~v~~~~~g-l~~~~~~g-  123 (355)
                      ..+..|.+|++|+.++.+|++.. .++|+++++.....+.+... ...|. ||++|. .++||+++...+ |.+.+.+| 
T Consensus       346 ~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~-GlAvD~~~~~lY~tD~~~~~I~v~~~~G~  424 (619)
T 3s94_A          346 EDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPD-GIAVDWVARNLYWTDTGTDRIEVTRLNGT  424 (619)
T ss_dssp             SCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCC-EEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             cccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcC-ceEEecccCcEEEEeCCCCcEEEEeCCCC
Confidence            34678999999977888888764 78999999955444444433 36799 999995 678999998755 55555566 


Q ss_pred             -eEEEcC-CcCCcccEEEccC-CcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee-ccccccccEEEeC
Q 018474          124 -VEAIVP-DASFTNDVIAASD-GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFYFANGIALSK  199 (355)
Q Consensus       124 -~~~~~~-~~~~~~~l~~d~d-G~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~-~~~~~pngi~~~~  199 (355)
                       .+.+.. ....|++|++||. |.||++|...                ...|++.+.++...+.+. ..+..|+||++++
T Consensus       425 ~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~----------------~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~  488 (619)
T 3s94_A          425 MRKILISEDLEEPRAIVLDPMVGYMYWTDWGE----------------IPKIERAALDGSDRVVLVNTSLGWPNGLALDY  488 (619)
T ss_dssp             SCEEEECTTCCSEEEEEEETTTTEEEEEECSS----------------SCEEEEEETTSCSCEEEECSSCSCEEEEEEET
T ss_pred             eEEEEEECCCCCeeeEEEEcCCCcEEEecCCC----------------CCEEEEEccCCCccEEEEeCCCCCCeeeEEcc
Confidence             555543 4588999999985 8999999751                357888888665444444 4588999999999


Q ss_pred             CCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474          200 NEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       200 dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      +++.|||+++..++|.+++++|...   +.+.......|.+++++. +++|+++..
T Consensus       489 ~~~~LY~aD~~~~~I~~~~~dG~~~---~~~~~~~l~~P~glav~~-~~ly~tD~~  540 (619)
T 3s94_A          489 DEGKIYWGDAKTDKIEVMNTDGTGR---RVLVEDKIPHIFGFTLLG-DYVYWTDWQ  540 (619)
T ss_dssp             TTTEEEEEETTTTEEEEEESSSCCC---EEEEECCCCSSCCEEEET-TEEEEECTT
T ss_pred             cCCEEEEEECCCCEEEEEecCCCce---EEEeccCCCCcEEEEEEC-CEEEEeecC
Confidence            8889999999999999999987432   233322234699999976 489999866

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.66  E-value=1.8e-14  Score=135.86  Aligned_cols=181  Identities=13%  Similarity=0.191  Sum_probs=130.8

Q ss_pred             CCCCceEEEeeCCCeEEEEecCC--EEEEEEcCCCee-EEe---ec-cCCCcccCeEECC-CCCEEEEeCCCcEEEEcC-
Q 018474           51 VNHPEDVSVVVSKGALYTATRDG--WVKYFILHNETL-VNW---KH-IDSQSLLGLTTTK-DGGVILCDNEKGLLKVTE-  121 (355)
Q Consensus        51 ~~~p~~i~~d~~~g~l~~~~~~g--~i~~~~~~~g~~-~~~---~~-~~~~p~~gl~~d~-~g~L~v~~~~~gl~~~~~-  121 (355)
                      ...|. ++++++++.||++..++  .|+++++.++.. ..+   .. ....|. ++++|+ +|+||+++..+.+++++. 
T Consensus       171 ~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~-~iav~p~~g~lyv~d~~~~I~~~d~~  248 (409)
T 3hrp_A          171 FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIG-AVALDETEEWLYFVDSNKNFGRFNVK  248 (409)
T ss_dssp             CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCC-BCEECTTSSEEEEECTTCEEEEEETT
T ss_pred             CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcE-EEEEeCCCCeEEEEECCCcEEEEECC
Confidence            45677 99997778899887754  899999865543 222   12 346789 999998 789999886556999985 


Q ss_pred             CC-eEEE----cCCc--CCcc-cEEEcc-CCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeec-c---
Q 018474          122 EG-VEAI----VPDA--SFTN-DVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE-G---  188 (355)
Q Consensus       122 ~g-~~~~----~~~~--~~~~-~l~~d~-dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~-~---  188 (355)
                      ++ .+.+    ....  ..|. ++++++ +|+||+++..                 .+.|++|++++. ...+.. .   
T Consensus       249 ~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~-----------------~~~I~~~~~~g~-~~~~~g~~~~~  310 (409)
T 3hrp_A          249 TQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN-----------------LSSVYKITPDGE-CEWFCGSATQK  310 (409)
T ss_dssp             TCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT-----------------TTEEEEECTTCC-EEEEEECTTCC
T ss_pred             CCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCC-----------------CCEEEEEecCCC-EEEEEeCCCCC
Confidence            45 5444    2111  2345 999999 5899999876                 568999998654 444432 1   


Q ss_pred             -----------ccccccEEEeCCCCEEEEEeC-CCCeEEEEEeCCCCCcceeEeccc---------C-----CCCcCceE
Q 018474          189 -----------FYFANGIALSKNEDFVVVCES-WKFRCRRYWLKGDRAGILDAFIEN---------L-----PGGPDNIN  242 (355)
Q Consensus       189 -----------~~~pngi~~~~dg~~l~v~~~-~~~~i~~~~~~~~~~~~~~~~~~~---------~-----~g~p~~i~  242 (355)
                                 +..|+|++++++|+ +|++++ ..++|.++++...   ....+...         .     -..|.+++
T Consensus       311 g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~~~~~I~~~~~~~G---~v~~~~g~~~~~g~~~g~~~~~~~~~P~gia  386 (409)
T 3hrp_A          311 TVQDGLREEALFAQPNGMTVDEDGN-FYIVDGFKGYCLRKLDILDG---YVSTVAGQVDVASQIDGTPLEATFNYPYDIC  386 (409)
T ss_dssp             SCBCEEGGGCBCSSEEEEEECTTCC-EEEEETTTTCEEEEEETTTT---EEEEEEECTTCBSCCCBSTTTCCBSSEEEEE
T ss_pred             CcCCCcccccEeCCCeEEEEeCCCC-EEEEeCCCCCEEEEEECCCC---EEEEEeCCCCCCCcCCCChhceEeCCceEEE
Confidence                       45699999999998 999999 9999999995322   22222211         0     13589999


Q ss_pred             ECCCCCEEEEeec
Q 018474          243 LAPDGSFWIGLIK  255 (355)
Q Consensus       243 ~d~~G~lwv~~~~  255 (355)
                      +|++|+|||+...
T Consensus       387 vd~~g~lyVad~~  399 (409)
T 3hrp_A          387 YDGEGGYWIAEAW  399 (409)
T ss_dssp             ECSSSEEEEEEST
T ss_pred             EcCCCCEEEEECC
Confidence            9999999999976

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.66  E-value=4.5e-14  Score=129.39  Aligned_cols=242  Identities=12%  Similarity=0.167  Sum_probs=155.0

Q ss_pred             CCCCceEEEeeCCCeEEEEec---CCEEEEEEcCCCeeEEeec---cCCCcccCeEECCCCC-EEEEeCCCc-EEEEc--
Q 018474           51 VNHPEDVSVVVSKGALYTATR---DGWVKYFILHNETLVNWKH---IDSQSLLGLTTTKDGG-VILCDNEKG-LLKVT--  120 (355)
Q Consensus        51 ~~~p~~i~~d~~~g~l~~~~~---~g~i~~~~~~~g~~~~~~~---~~~~p~~gl~~d~~g~-L~v~~~~~g-l~~~~--  120 (355)
                      ...|.++++++ +|.+|++..   ++.|+.++..+++.+.+..   ....|. +++++++|+ ||++....+ +..++  
T Consensus        39 ~~~p~~~a~sp-dg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~-~~a~spdg~~l~~~~~~~~~v~v~~~~  116 (347)
T 3hfq_A           39 TQNPTYLALSA-KDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPA-YVAVDEARQLVYSANYHKGTAEVMKIA  116 (347)
T ss_dssp             CSCCCCEEECT-TCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCS-EEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             cCCcceEEEcc-CCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCE-EEEECCCCCEEEEEeCCCCEEEEEEeC
Confidence            47899999995 555888765   4789999987777554433   356788 999999997 788875544 44444  


Q ss_pred             CCC-eEEEc---CCc---------CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCC-CCeEEEee
Q 018474          121 EEG-VEAIV---PDA---------SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPK-LKETTVLH  186 (355)
Q Consensus       121 ~~g-~~~~~---~~~---------~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~-~~~~~~~~  186 (355)
                      .+| .+.+.   ...         ..++++++++||++|+++..                 .+.+..|+.+ ++++....
T Consensus       117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~-----------------~~~v~~~~~~~~g~~~~~~  179 (347)
T 3hfq_A          117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLG-----------------SDKVYVYNVSDAGQLSEQS  179 (347)
T ss_dssp             TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETT-----------------TTEEEEEEECTTSCEEEEE
T ss_pred             CCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCC-----------------CCEEEEEEECCCCcEEEee
Confidence            355 43322   111         24778999999999988765                 3467777665 55554332


Q ss_pred             ----ccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCC--CCCcceeEecccCC------CCcCceEECCCCC-EEEEe
Q 018474          187 ----EGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKG--DRAGILDAFIENLP------GGPDNINLAPDGS-FWIGL  253 (355)
Q Consensus       187 ----~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~------g~p~~i~~d~~G~-lwv~~  253 (355)
                          .....|++++++|||+.+|+++...+.|..|+++.  ........+. ..+      ..|.+++++++|+ +|++.
T Consensus       180 ~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~i~~spdG~~l~v~~  258 (347)
T 3hfq_A          180 VLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVK-TIPADYTAHNGAAAIRLSHDGHFLYVSN  258 (347)
T ss_dssp             EEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEE-SSCTTCCSCCEEEEEEECTTSCEEEEEE
T ss_pred             eEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeee-ecCCCCCCCCcceeEEECCCCCEEEEEe
Confidence                12346788999999999999988888999988863  1111111111 122      2356689999998 66766


Q ss_pred             ecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeE--EEEEECCCCCcccceeEEEEe--CCE
Q 018474          254 IKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKI--IRDFNDPDATYISFVTSAAEF--DGN  329 (355)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~--~~~~~~~~g~~~~~~~~~~~~--~g~  329 (355)
                      ...                                  ..-.++.+++ +|+.  +..+... +.   .+..+...  +..
T Consensus       259 ~~~----------------------------------~~v~v~~~~~-~g~~~~~~~~~~~-~~---~~~~~~~spdg~~  299 (347)
T 3hfq_A          259 RGY----------------------------------NTLAVFAVTA-DGHLTLIQQISTE-GD---FPRDFDLDPTEAF  299 (347)
T ss_dssp             ETT----------------------------------TEEEEEEECG-GGCEEEEEEEECS-SS---CCCEEEECTTSSE
T ss_pred             CCC----------------------------------CEEEEEEECC-CCcEEEeEEEecC-CC---CcCeEEECCCCCE
Confidence            531                                  1113444444 5533  3333332 21   23445544  457


Q ss_pred             EEEeecCCCeEEEeeCCCCCCC
Q 018474          330 LYLASLQSNFIGILPLDGPEPQ  351 (355)
Q Consensus       330 L~v~~~~~~~i~~~~~~~~~~~  351 (355)
                      ||+++..++.|.+++++...-+
T Consensus       300 l~v~~~~~~~v~v~~~d~~tg~  321 (347)
T 3hfq_A          300 VVVVNQNTDNATLYARDLTSGK  321 (347)
T ss_dssp             EEEEETTTTEEEEEEECTTTCC
T ss_pred             EEEEEcCCCcEEEEEEeCCCCe
Confidence            9999998899999977655433

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.65  E-value=1e-14  Score=144.38  Aligned_cols=187  Identities=14%  Similarity=0.158  Sum_probs=134.5

Q ss_pred             CCCCCCceEEEeeCCCeEEEEec-CCEEEEEEcCCCe-eEEeecc-CCCcccCeEECC-CCCEEEEeCCCc-EEEEcCCC
Q 018474           49 GCVNHPEDVSVVVSKGALYTATR-DGWVKYFILHNET-LVNWKHI-DSQSLLGLTTTK-DGGVILCDNEKG-LLKVTEEG  123 (355)
Q Consensus        49 ~~~~~p~~i~~d~~~g~l~~~~~-~g~i~~~~~~~g~-~~~~~~~-~~~p~~gl~~d~-~g~L~v~~~~~g-l~~~~~~g  123 (355)
                      ..+..|.+|++++.++.+|++.. +++|.++++.... .+.+... ...|. ||++|. .++||+++...+ |.+++.+|
T Consensus        37 ~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~-GlAvD~~~~~ly~~d~~~~~I~v~~~dG  115 (619)
T 3s94_A           37 GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPD-GLACDWLGEKLYWTDSETNRIEVSNLDG  115 (619)
T ss_dssp             BCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEE-EEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             cCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcC-eEEEEecCCEEEEEeCCCCEEEEEECCC
Confidence            34788999999977888887664 7899999984432 2333322 35799 999997 678999998755 55666666


Q ss_pred             --eEEEc-CCcCCcccEEEccC-CcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee-ccccccccEEEe
Q 018474          124 --VEAIV-PDASFTNDVIAASD-GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFYFANGIALS  198 (355)
Q Consensus       124 --~~~~~-~~~~~~~~l~~d~d-G~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~-~~~~~pngi~~~  198 (355)
                        .+.+. .....|++|++|+. |.||++|...                .+.+++.++++...+.+. ..+..|+||+++
T Consensus       116 ~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~----------------~~~I~r~~~dG~~~~~l~~~~~~~P~Glald  179 (619)
T 3s94_A          116 SLRKVLFWQELDQPRAIALDPSSGFMYWTDWGE----------------VPKIERAGMDGSSRFIIINSEIYWPNGLTLD  179 (619)
T ss_dssp             CSCEEEECSSCSCCCCEEEETTTTEEEEEECSS----------------SCEEEEEETTSCSCEEEECSSCSSEEEEEEE
T ss_pred             CCEEEEEeCCCCCCceEEEecCCCeEEEeccCC----------------CCEEEEEECCCCceEEEEeCCCCCCcEEEEE
Confidence              55554 44588999999985 7999998641                357999988766555444 567889999999


Q ss_pred             CCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeecC
Q 018474          199 KNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKM  256 (355)
Q Consensus       199 ~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~  256 (355)
                      ++++.|||++...++|++++++|..   .+.+.......|.+++++.+ ++|++....
T Consensus       180 ~~~~~LY~aD~~~~~I~~~~~dG~~---~~~~~~~~~~~P~gi~~~~~-~ly~td~~~  233 (619)
T 3s94_A          180 YEEQKLYWADAKLNFIHKSNLDGTN---RQAVVKGSLPHPFALTLFED-ILYWTDWST  233 (619)
T ss_dssp             TTTTEEEEEETTTCCEEEESSSCCE---EC---------CCCEEESSS-EEEEECTTT
T ss_pred             ccCCEEEEEeCCCCeEEEecCCCCc---cEEEEeCCCCCceEEEEeCC-EEEEecCCC
Confidence            9988999999999999999997732   22233222346899999876 788888653

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.65  E-value=3.2e-14  Score=131.52  Aligned_cols=202  Identities=16%  Similarity=0.209  Sum_probs=130.8

Q ss_pred             ceEecCCCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeec------cCCCcccCeEECCC----CCEEEEeC
Q 018474           43 LTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH------IDSQSLLGLTTTKD----GGVILCDN  112 (355)
Q Consensus        43 ~~~~~~~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~------~~~~p~~gl~~d~~----g~L~v~~~  112 (355)
                      .+.+..+ +..|++|+++ .+|.+|++...|+|++++  +++.+.+..      ....|. ||+++++    +.|||+..
T Consensus        23 ~~~va~~-l~~P~~ia~~-pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~-gia~~pdf~~~g~lYv~~~   97 (352)
T 2ism_A           23 VEEVVGG-LEVPWALAFL-PDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLL-GLALHPRFPQEPYVYAYRT   97 (352)
T ss_dssp             EEEEECC-CSCEEEEEEC-TTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEE-EEEECTTTTTSCEEEEEEE
T ss_pred             EEEEECC-CCCceEEEEc-CCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCce-eEEECCCCCCCCEEEEEEe
Confidence            4566655 7899999999 567799999899999998  565544321      235689 9999987    78999876


Q ss_pred             C------CcEEEEcC-CC-e---EE----EcC--C-cCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEE
Q 018474          113 E------KGLLKVTE-EG-V---EA----IVP--D-ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRK  174 (355)
Q Consensus       113 ~------~gl~~~~~-~g-~---~~----~~~--~-~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~  174 (355)
                      .      ..|++++. .+ +   +.    +..  . ...++++++++||.||+++.....  ......  .....|.++|
T Consensus        98 ~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~--~~~~~d--~~~~~g~I~r  173 (352)
T 2ism_A           98 VAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYE--RELAQD--LASLGGKILR  173 (352)
T ss_dssp             ECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTC--GGGGGC--TTCSSSEEEE
T ss_pred             cCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCC--CccccC--CCCCceEEEE
Confidence            3      46888873 32 2   22    221  1 257889999999999999754210  000001  1133579999


Q ss_pred             EeCCC-------------CeEEEeeccccccccEEEeCCCCEEEEEeCCCCe--------EEEEEeCCCCCcc-------
Q 018474          175 YDPKL-------------KETTVLHEGFYFANGIALSKNEDFVVVCESWKFR--------CRRYWLKGDRAGI-------  226 (355)
Q Consensus       175 ~dp~~-------------~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~--------i~~~~~~~~~~~~-------  226 (355)
                      +++++             ...+.+..++.+|+|++++++...||+++...++        |.++.. +...+.       
T Consensus       174 i~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~-G~nyGwp~~~g~~  252 (352)
T 2ism_A          174 LTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVP-GGNYGWPRVVGRG  252 (352)
T ss_dssp             ECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECT-TCBCCTTTCCSCC
T ss_pred             EcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEecc-CCcCCCCcccCCC
Confidence            99975             2344566778889999999944449999987766        444432 221110       


Q ss_pred             -----eeEecc-cCCCCcCceEECCCCCEEEEeec
Q 018474          227 -----LDAFIE-NLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       227 -----~~~~~~-~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                           ...... .....|.++++ .+|++|++...
T Consensus       253 ~~~~~~~p~~~~~~~~ap~G~~~-~~G~l~v~~~~  286 (352)
T 2ism_A          253 NDPRYRDPLYFWPQGFPPGNLAF-FRGDLYVAGLR  286 (352)
T ss_dssp             CCTTSCCCSEECTTCCCEEEEEE-ETTEEEEEETT
T ss_pred             CCCCCcCCeEecCCCCCCcceEE-ECCEEEEEECC
Confidence                 000100 11124788888 46899999865

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.64  E-value=1.2e-14  Score=132.98  Aligned_cols=198  Identities=13%  Similarity=0.181  Sum_probs=136.3

Q ss_pred             CCcccCeEECCCCCEEEEeCCC-------------------------cEEEEcC-CC-e-EEEcC-CcCCcccEEEccCC
Q 018474           93 SQSLLGLTTTKDGGVILCDNEK-------------------------GLLKVTE-EG-V-EAIVP-DASFTNDVIAASDG  143 (355)
Q Consensus        93 ~~p~~gl~~d~~g~L~v~~~~~-------------------------gl~~~~~-~g-~-~~~~~-~~~~~~~l~~d~dG  143 (355)
                      +.+. ++++|++|++||++..+                         .+++++. +| + +.... ....|+++++|++|
T Consensus        24 ~~v~-~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           24 GQVS-GVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             SCEE-EEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             CCce-EEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            5688 99999999999998765                         3788885 57 4 33332 23789999999999


Q ss_pred             cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCC--eEEEee---------ccccccccEEEeC-CCCEEEEEeC-C
Q 018474          144 TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLK--ETTVLH---------EGFYFANGIALSK-NEDFVVVCES-W  210 (355)
Q Consensus       144 ~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~--~~~~~~---------~~~~~pngi~~~~-dg~~l~v~~~-~  210 (355)
                      ++|+++..                 .+.+++||+++.  .+..+.         ..+..|+++++++ +++ +|++++ .
T Consensus       103 ~l~v~d~~-----------------~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~-lyv~d~~~  164 (329)
T 3fvz_A          103 NYWVTDVA-----------------LHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGA-VFVSDGYC  164 (329)
T ss_dssp             CEEEEETT-----------------TTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCC-EEEEECSS
T ss_pred             CEEEEECC-----------------CCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCe-EEEEeCCC
Confidence            99999875                 468999998755  233332         2345799999999 565 999997 6


Q ss_pred             CCeEEEEEeCCCCCcceeEeccc------CCCCcCceEECCC-CCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhc
Q 018474          211 KFRCRRYWLKGDRAGILDAFIEN------LPGGPDNINLAPD-GSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISL  283 (355)
Q Consensus       211 ~~~i~~~~~~~~~~~~~~~~~~~------~~g~p~~i~~d~~-G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (355)
                      .++|.+|+.++............      .-..|.++++|++ |++||+....                           
T Consensus       165 ~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~---------------------------  217 (329)
T 3fvz_A          165 NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADREN---------------------------  217 (329)
T ss_dssp             CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTT---------------------------
T ss_pred             CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCC---------------------------
Confidence            89999999655322111110000      0124899999998 8999998652                           


Q ss_pred             ccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeE-------EEEeCCEEEEeecCCCeEEEeeCCC
Q 018474          284 LLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTS-------AAEFDGNLYLASLQSNFIGILPLDG  347 (355)
Q Consensus       284 ~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~-------~~~~~g~L~v~~~~~~~i~~~~~~~  347 (355)
                               +.|.+|++++|+.+..+..+..  ...+..       +...+|++|+++.....|.++++.+
T Consensus       218 ---------~~I~~~~~~~G~~~~~~~~~~~--~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~  277 (329)
T 3fvz_A          218 ---------GRIQCFKTDTKEFVREIKHASF--GRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSS  277 (329)
T ss_dssp             ---------TEEEEEETTTCCEEEEECCTTT--TTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTT
T ss_pred             ---------CEEEEEECCCCcEEEEEecccc--CCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCC
Confidence                     4799999933998888854321  111222       2233566777777777888877543

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.64  E-value=2.5e-14  Score=128.90  Aligned_cols=180  Identities=13%  Similarity=0.113  Sum_probs=130.7

Q ss_pred             CCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEe-ecc-----CCCcccCeEECCCCCEEEEeCC------------
Q 018474           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNW-KHI-----DSQSLLGLTTTKDGGVILCDNE------------  113 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~-~~~-----~~~p~~gl~~d~~g~L~v~~~~------------  113 (355)
                      ..|.+++++++++.+|+++..++|++++++ ++...+ ...     ...|. ++++|++|++|+++..            
T Consensus        71 ~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~-~i~~d~~g~l~v~~~~~~~~~~~~~~~~  148 (314)
T 1pjx_A           71 GIPAGCQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCN-DCAFDYEGNLWITAPAGEVAPADYTRSM  148 (314)
T ss_dssp             CCEEEEEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCC-EEEECTTSCEEEEECBCBCTTSCCCBTT
T ss_pred             CCCceEEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCc-CEEECCCCCEEEEecCcccccccccccc
Confidence            568999999433899999877789999997 877665 321     13478 9999999999999864            


Q ss_pred             ----CcEEEEcCCC-eEEEcCCcCCcccEEEc----cCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCC-CCeE
Q 018474          114 ----KGLLKVTEEG-VEAIVPDASFTNDVIAA----SDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPK-LKET  182 (355)
Q Consensus       114 ----~gl~~~~~~g-~~~~~~~~~~~~~l~~d----~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~-~~~~  182 (355)
                          .++++++.++ .+.+......+++++++    ++| .+|+++..                 .+++++||++ ++++
T Consensus       149 ~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~-----------------~~~i~~~~~~~~g~~  211 (314)
T 1pjx_A          149 QEKFGSIYCFTTDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETP-----------------TKKLWSYDIKGPAKI  211 (314)
T ss_dssp             SSSCEEEEEECTTSCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETT-----------------TTEEEEEEEEETTEE
T ss_pred             cCCCCeEEEECCCCCEEEeccCCCCcceEEEecccCCCCCEEEEEECC-----------------CCeEEEEECCCCCcc
Confidence                3689998657 55544333678999999    999 69998754                 4578888864 4543


Q ss_pred             E---Eee--c-cc-cccccEEEeCCCCEEEEEeCCCCeEEEEEeC-CCCCcceeEecccCCCCcCceEECCCCC-EEEEe
Q 018474          183 T---VLH--E-GF-YFANGIALSKNEDFVVVCESWKFRCRRYWLK-GDRAGILDAFIENLPGGPDNINLAPDGS-FWIGL  253 (355)
Q Consensus       183 ~---~~~--~-~~-~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~  253 (355)
                      .   .+.  . .. ..|.+++++++|+ +|+++...++|.+|+.+ +...   ..+. .....|.+++++++|+ +|+++
T Consensus       212 ~~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~~~~~~i~~~d~~~g~~~---~~~~-~~~~~~~~i~~~~dg~~l~v~~  286 (314)
T 1pjx_A          212 ENKKVWGHIPGTHEGGADGMDFDEDNN-LLVANWGSSHIEVFGPDGGQPK---MRIR-CPFEKPSNLHFKPQTKTIFVTE  286 (314)
T ss_dssp             EEEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEETTTEEEEECTTCBSCS---EEEE-CSSSCEEEEEECTTSSEEEEEE
T ss_pred             ccceEEEECCCCCCCCCCceEECCCCC-EEEEEcCCCEEEEEcCCCCcEe---EEEe-CCCCCceeEEECCCCCEEEEEe
Confidence            2   111  1 11 5689999999997 89998778899999976 3222   1121 1124578899999998 99998


Q ss_pred             ec
Q 018474          254 IK  255 (355)
Q Consensus       254 ~~  255 (355)
                      ..
T Consensus       287 ~~  288 (314)
T 1pjx_A          287 HE  288 (314)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=99.64  E-value=4.8e-14  Score=143.25  Aligned_cols=226  Identities=14%  Similarity=0.191  Sum_probs=148.4

Q ss_pred             CceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeecc-------CCCcccCeEECCCCCEEEEeCCCcEEEEcC-C---
Q 018474           54 PEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI-------DSQSLLGLTTTKDGGVILCDNEKGLLKVTE-E---  122 (355)
Q Consensus        54 p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~-------~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~-~---  122 (355)
                      ..+|+.| .+|.||+++ +++|.++++++++++.+...       ...+. .++.|++|+||+++..+||+++++ +   
T Consensus       375 v~~i~~d-~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~i~~d~~g~lWigT~~~Gl~~~~~~~~~~  451 (758)
T 3ott_A          375 IRHIYED-KEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTY-YIFEDTAGQLWISTCLGGIFVVDKHKLMQ  451 (758)
T ss_dssp             EEEEEEC-TTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEE-EEEECTTSEEEEEESSSCEEEEEHHHHHH
T ss_pred             eEEEEEC-CCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEE-EEEEcCCCCEEEEECCCceEEEccccccc
Confidence            4578888 788999999 56899999989988776421       12356 788999999999998789999984 2   


Q ss_pred             ---C-e---EEEcCC--c--CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecc-c-
Q 018474          123 ---G-V---EAIVPD--A--SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG-F-  189 (355)
Q Consensus       123 ---g-~---~~~~~~--~--~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~-~-  189 (355)
                         + .   +.+...  .  ..++++..|++|+||+....                 .++|++||+++++++.+... + 
T Consensus       452 ~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t-----------------~~Gl~~~d~~~~~~~~~~~~~~~  514 (758)
T 3ott_A          452 STSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYN-----------------NKGIDKINPRTREVTKLFADELT  514 (758)
T ss_dssp             CCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETT-----------------CSSEEEEETTTTEEEEECTTTSC
T ss_pred             cCCcceecccccccccccccceeeeEEEcCCCCEEEEccC-----------------CCCcEEEeCCCCceEEecCCCcC
Confidence               2 2   122111  1  45788999999999993211                 24799999999888776422 1 


Q ss_pred             --cccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCC-CcCceEECCCCCEEEEeecCCchhhHhhhc
Q 018474          190 --YFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPG-GPDNINLAPDGSFWIGLIKMNQTGVRAIQK  266 (355)
Q Consensus       190 --~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g-~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~  266 (355)
                        ..++.+..+.+|+ +|++.  .++|.+|+.+......+.  .+.++. ....+..| +|+||+++..           
T Consensus       515 ~~~~~~~i~~d~~g~-lWigt--~~Gl~~~~~~~~~~~~~~--~~gl~~~~i~~i~~~-~g~lWi~t~~-----------  577 (758)
T 3ott_A          515 GEKSPNYLLCDEDGL-LWVGF--HGGVMRINPKDESQQSIS--FGSFSNNEILSMTCV-KNSIWVSTTN-----------  577 (758)
T ss_dssp             GGGCEEEEEECTTSC-EEEEE--TTEEEEECC--CCCCBCC--CCC---CCEEEEEEE-TTEEEEEESS-----------
T ss_pred             CCcccceEEECCCCC-EEEEe--cCceEEEecCCCceEEec--ccCCCccceEEEEEC-CCCEEEECCC-----------
Confidence              2356778888887 88875  368999997554332221  112221 12334555 7999999964           


Q ss_pred             chhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEE-eCCEEEEeecCCCeEEEeeC
Q 018474          267 CREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAE-FDGNLYLASLQSNFIGILPL  345 (355)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~  345 (355)
                                                 |+.+|+| +...+..|..++.. +.  ..+.. .+|+||+|+.  +.+.++..
T Consensus       578 ---------------------------Gl~~~~~-~~~~~~~~~~~~~~-~~--~~~~~~~~G~l~fG~~--~Gl~~f~p  624 (758)
T 3ott_A          578 ---------------------------GLWIIDR-KTMDARQQNMTNKR-FT--SLLFDPKEDCVYLGGA--DGFGISHS  624 (758)
T ss_dssp             ---------------------------CEEEEET-TTCCEEEC--CCCC-CS--EEEEETTTTEEEEECB--SEEEEEEC
T ss_pred             ---------------------------CeEEEcC-CCceeEEecCCCCc-ee--eeEEECCCCcEEEecC--CceEEECh
Confidence                                       6999999 55556666555543 22  22333 3699999995  56777776


Q ss_pred             CCCC
Q 018474          346 DGPE  349 (355)
Q Consensus       346 ~~~~  349 (355)
                      ....
T Consensus       625 ~~~~  628 (758)
T 3ott_A          625 NLEA  628 (758)
T ss_dssp             ---C
T ss_pred             hhcc
Confidence            5443

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=99.64  E-value=2.1e-14  Score=145.93  Aligned_cols=225  Identities=12%  Similarity=0.144  Sum_probs=148.4

Q ss_pred             ceEEEeeCCCeEEEEecCCEEEEEEcCCC---eeEEeecc-------CCCcccCeEECCCCCEEEEeCCCcEEEEcC-CC
Q 018474           55 EDVSVVVSKGALYTATRDGWVKYFILHNE---TLVNWKHI-------DSQSLLGLTTTKDGGVILCDNEKGLLKVTE-EG  123 (355)
Q Consensus        55 ~~i~~d~~~g~l~~~~~~g~i~~~~~~~g---~~~~~~~~-------~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~-~g  123 (355)
                      .+|..| ++|.||+++. ++++++++.++   ++..+...       ...+. +|..|++|+||+++ .+||+++++ ++
T Consensus       327 ~~i~~D-~~g~lWiGt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~-~i~~d~~g~lWigt-~~GL~~~~~~~~  402 (758)
T 3ott_A          327 YSLFRD-SKGFYWFGGA-NGLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIR-HIYEDKEQQLWIAT-DGSINRYDYATR  402 (758)
T ss_dssp             EEEEEC-TTCCEEEEET-TEEEEESCTTSSCCCCEEECTTCSSSCCSCSCEE-EEEECTTSCEEEEE-TTEEEEEETTTT
T ss_pred             EEEEEc-CCCCEEEeeC-CcceeecccccccceeEEeccCCcCCCCCCCceE-EEEECCCCCEEEEe-CCcHhhcCcCCC
Confidence            467788 7899999985 56999987654   23333211       12356 78899999999999 459999995 66


Q ss_pred             -eEEEc--CC-----cCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCC------CeEE---Eee
Q 018474          124 -VEAIV--PD-----ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKL------KETT---VLH  186 (355)
Q Consensus       124 -~~~~~--~~-----~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~------~~~~---~~~  186 (355)
                       ++.+.  ..     ...+.++..|++|+||+++.                  .++|++||+++      +.+.   .+.
T Consensus       403 ~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~------------------~~Gl~~~~~~~~~~~~~~~~~~~~~~~  464 (758)
T 3ott_A          403 QFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWISTC------------------LGGIFVVDKHKLMQSTSGQYIAEQNYS  464 (758)
T ss_dssp             EEEEEEEECCC--CBSSSEEEEEECTTSEEEEEES------------------SSCEEEEEHHHHHHCCSSEEECSEEEC
T ss_pred             cEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEEC------------------CCceEEEccccccccCCcceecccccc
Confidence             55543  11     14577889999999999853                  24788888653      2221   111


Q ss_pred             --cccc--ccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEec-ccCC--CCcCceEECCCCCEEEEeecCCch
Q 018474          187 --EGFY--FANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFI-ENLP--GGPDNINLAPDGSFWIGLIKMNQT  259 (355)
Q Consensus       187 --~~~~--~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~--g~p~~i~~d~~G~lwv~~~~~~~~  259 (355)
                        .++.  ....+..+++|+ +|+.....++|.+|+.+..   ..+.+. +.+.  ..+..+..|++|++|+++..    
T Consensus       465 ~~~~l~~~~i~~i~~d~~g~-lWi~~~t~~Gl~~~d~~~~---~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt~~----  536 (758)
T 3ott_A          465 VHNGLSGMFINQIIPDNEGN-VWVLLYNNKGIDKINPRTR---EVTKLFADELTGEKSPNYLLCDEDGLLWVGFHG----  536 (758)
T ss_dssp             GGGTCSCSCEEEEEECTTSC-EEEEETTCSSEEEEETTTT---EEEEECTTTSCGGGCEEEEEECTTSCEEEEETT----
T ss_pred             cccccccceeeeEEEcCCCC-EEEEccCCCCcEEEeCCCC---ceEEecCCCcCCCcccceEEECCCCCEEEEecC----
Confidence              1221  234577788887 8873233478999997543   233332 1111  13455788999999999853    


Q ss_pred             hhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeCCEEEEeecCCCe
Q 018474          260 GVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNF  339 (355)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~  339 (355)
                                                        |+.+|++ +.+.+..|. .+|+..+.+.++.+++|+||+++  .+.
T Consensus       537 ----------------------------------Gl~~~~~-~~~~~~~~~-~~gl~~~~i~~i~~~~g~lWi~t--~~G  578 (758)
T 3ott_A          537 ----------------------------------GVMRINP-KDESQQSIS-FGSFSNNEILSMTCVKNSIWVST--TNG  578 (758)
T ss_dssp             ----------------------------------EEEEECC---CCCCBCC-CCC---CCEEEEEEETTEEEEEE--SSC
T ss_pred             ----------------------------------ceEEEec-CCCceEEec-ccCCCccceEEEEECCCCEEEEC--CCC
Confidence                                              7999999 555455554 35665667888888899999999  467


Q ss_pred             EEEeeCCC
Q 018474          340 IGILPLDG  347 (355)
Q Consensus       340 i~~~~~~~  347 (355)
                      |.+++..+
T Consensus       579 l~~~~~~~  586 (758)
T 3ott_A          579 LWIIDRKT  586 (758)
T ss_dssp             EEEEETTT
T ss_pred             eEEEcCCC
Confidence            88887654

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.62  E-value=1.1e-13  Score=140.11  Aligned_cols=184  Identities=14%  Similarity=0.107  Sum_probs=133.7

Q ss_pred             CCCCceEEEeeCCCeEEEEec-CCEEEEEEcCCC----eeEEeec-cCCCcccCeEECCCC-CEEEEeCCCc-EEEEcCC
Q 018474           51 VNHPEDVSVVVSKGALYTATR-DGWVKYFILHNE----TLVNWKH-IDSQSLLGLTTTKDG-GVILCDNEKG-LLKVTEE  122 (355)
Q Consensus        51 ~~~p~~i~~d~~~g~l~~~~~-~g~i~~~~~~~g----~~~~~~~-~~~~p~~gl~~d~~g-~L~v~~~~~g-l~~~~~~  122 (355)
                      +..|.+|++++.++.||++.. +++|++++....    ....+.. ....|. ||++|..+ +||+++...+ |.+++.+
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~-GLAvD~~~~~LY~tD~~~~~I~v~~ld  501 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD-GLAVDWIHSNIYWTDSVLGTVSVADTK  501 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC-EEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc-eeeeeecCCcEEEEecCCCeEEEEeCC
Confidence            688999999976888887665 688999988432    2233332 346799 99999654 8999998754 6666766


Q ss_pred             C--eEEEc-CCcCCcccEEEccC-CcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee-ccccccccEEE
Q 018474          123 G--VEAIV-PDASFTNDVIAASD-GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFYFANGIAL  197 (355)
Q Consensus       123 g--~~~~~-~~~~~~~~l~~d~d-G~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~-~~~~~pngi~~  197 (355)
                      |  .+++. .....|++|++|+. |.||++|...                ...|.+++.++...+.+. .++..|+||++
T Consensus       502 G~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~----------------~~~I~~~~~dG~~~~~lv~~~l~~P~GLav  565 (791)
T 3m0c_C          502 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT----------------PAKIKKGGLNGVDIYSLVTENIQWPNGITL  565 (791)
T ss_dssp             SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSS----------------SCEEEEEETTSCCEEEEECSSCSCEEEEEE
T ss_pred             CCeEEEEEeCCCCCcceEEEecCCCCEEEecCCC----------------CCeEEEEecCCCceEEEEeCCCCCceEEEE
Confidence            6  44444 34478999999985 7999998651                257999998776665554 46788999999


Q ss_pred             eCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccC--CCCcCceEECCCCCEEEEeec
Q 018474          198 SKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENL--PGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       198 ~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      +++++.|||++...++|.+++++|...   +.++...  -..|.++.++. ++||++...
T Consensus       566 D~~~~~LYwaD~~~~~I~~~d~dG~~~---~~v~~~~~~l~~P~glav~~-~~lYwtD~~  621 (791)
T 3m0c_C          566 DLLSGRLYWVDSKLHSISSIDVNGGNR---KTILEDEKRLAHPFSLAVFE-DKVFWTDII  621 (791)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSCSC---EEEEECTTTTSSEEEEEEET-TEEEEEETT
T ss_pred             ecCCCeEEEEeCCCCcEEEEecCCCce---EEEecCCCccCCCCEEEEeC-CEEEEEECC
Confidence            988889999999999999999987432   2233221  12467787764 579998865

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.62  E-value=8e-14  Score=138.15  Aligned_cols=190  Identities=12%  Similarity=0.059  Sum_probs=138.7

Q ss_pred             ecCCCCCCCceEEEeeCCCeEEEEec-CCEEEEEEcCCCeeE-Eeec------cCCCcccCeEECCC-CCEEEEeCCCcE
Q 018474           46 LGEGCVNHPEDVSVVVSKGALYTATR-DGWVKYFILHNETLV-NWKH------IDSQSLLGLTTTKD-GGVILCDNEKGL  116 (355)
Q Consensus        46 ~~~~~~~~p~~i~~d~~~g~l~~~~~-~g~i~~~~~~~g~~~-~~~~------~~~~p~~gl~~d~~-g~L~v~~~~~gl  116 (355)
                      ++...+..+.+|.+|+.++.+|++.. .++|++++....... .+..      ....|. ||++|.. ++||+++...+.
T Consensus       334 l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~-glAvD~~~~nLY~td~~~~~  412 (628)
T 4a0p_A          334 LPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPY-DLSIDIYSRYIYWTCEATNV  412 (628)
T ss_dssp             CCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEE-EEEEETTTTEEEEEETTTTE
T ss_pred             EEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcc-eEEeeccCCeEEEEcCCCCE
Confidence            33344677889999977888887764 789999987432222 2222      234799 9999976 569999987664


Q ss_pred             E-EEcCCC--eEEEc-CCcCCcccEEEcc-CCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee-cccc
Q 018474          117 L-KVTEEG--VEAIV-PDASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFY  190 (355)
Q Consensus       117 ~-~~~~~g--~~~~~-~~~~~~~~l~~d~-dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~-~~~~  190 (355)
                      + ..+.+|  .+.+. .....|++|++|| +|.||++|...               ....|++.++++...+.+. ..+.
T Consensus       413 I~v~~~~G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~---------------~~~~I~r~~~dG~~~~~l~~~~l~  477 (628)
T 4a0p_A          413 INVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQE---------------RSPKIERAALDGTEREVLFFSGLS  477 (628)
T ss_dssp             EEEEETTSCEEEEEEECTTCCEEEEEEETTTTEEEEEEEET---------------TEEEEEEEETTSCSCEEEECSSCS
T ss_pred             EEEEECCCCeEEEEEeCCCCceeeEEEecCCCeEEEeecCC---------------CCCeEEEEeCCCCCcEEEEeccCC
Confidence            4 444677  44443 3447899999998 89999998651               1137999998766555554 4688


Q ss_pred             ccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474          191 FANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       191 ~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      .|+||+++++++.|||+++..++|.+++++|..   .+++.......|.+++++. |++|+++..
T Consensus       478 ~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~---r~~~~~~~~~~P~glav~~-~~ly~tD~~  538 (628)
T 4a0p_A          478 KPIALALDSRLGKLFWADSDLRRIESSDLSGAN---RIVLEDSNILQPVGLTVFE-NWLYWIDKQ  538 (628)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEEECSSCSCEEEEEEET-TEEEEEETT
T ss_pred             CccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCc---eEEEEcCCCCCcEEEEEEC-CEEEEEECC
Confidence            999999999988999999999999999998743   3344433334699999986 789998865

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.62  E-value=3.3e-15  Score=150.03  Aligned_cols=185  Identities=14%  Similarity=0.113  Sum_probs=132.5

Q ss_pred             CCCCCceEEEeeCCCeEEEEec-CCEEEEEEcCC----CeeEEee-ccCCCcccCeEEC-CCCCEEEEeCC-CcEEEEcC
Q 018474           50 CVNHPEDVSVVVSKGALYTATR-DGWVKYFILHN----ETLVNWK-HIDSQSLLGLTTT-KDGGVILCDNE-KGLLKVTE  121 (355)
Q Consensus        50 ~~~~p~~i~~d~~~g~l~~~~~-~g~i~~~~~~~----g~~~~~~-~~~~~p~~gl~~d-~~g~L~v~~~~-~gl~~~~~  121 (355)
                      .+..|++|++++.++.||++.. +++|+++++.+    .....+. .....|. ||++| ..|+||+++.. +.|.+++.
T Consensus       404 ~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~-glavD~~~g~LY~tD~~~~~I~v~d~  482 (699)
T 1n7d_A          404 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD-GLAVDWIHSNIYWTDSVLGTVSVADT  482 (699)
T ss_dssp             CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CC-CEECCCSSSBCEECCTTTSCEEEEBS
T ss_pred             cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcc-eEEEEeeCCcEEEEeccCCeEEEEec
Confidence            3678999999977888888754 68899999854    1222222 2234688 99999 56789999876 45778876


Q ss_pred             CC--eEEEcC-CcCCcccEEEcc-CCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEe-eccccccccEE
Q 018474          122 EG--VEAIVP-DASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL-HEGFYFANGIA  196 (355)
Q Consensus       122 ~g--~~~~~~-~~~~~~~l~~d~-dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~-~~~~~~pngi~  196 (355)
                      +|  .+.+.. ....|++|++|+ .|.||+++...                .+.|+++++++...+.+ ...+..|+||+
T Consensus       483 dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~----------------~~~I~~~~~dG~~~~~l~~~~l~~PnGla  546 (699)
T 1n7d_A          483 KGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGT----------------PAKIKKGGLNGVDIYSLVTENIQWPNGIT  546 (699)
T ss_dssp             SSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSS----------------SCCEEBCCSSSCCCCEESCSSCSSCCCEE
T ss_pred             CCCceEEEEeCCCCCcceEEEccCCCcEEEcccCC----------------CCeEEEEeCCCCCeeEEEeCCCCCccEEE
Confidence            55  455543 347899999998 46999998541                25788888765444433 35678899999


Q ss_pred             EeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEeccc--CCCCcCceEECCCCCEEEEeec
Q 018474          197 LSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIEN--LPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       197 ~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      ++++++.|||+++..++|.+++++|.   ..+.+...  ....|.++++|.+ ++|++...
T Consensus       547 vd~~~~~LY~aD~~~~~I~~~d~dG~---~~~~~~~~~~~~~~P~glavd~~-~lywtd~~  603 (699)
T 1n7d_A          547 LDLLSGRLYWVDSKLHSISSIDVNGG---NRKTILEDEKRLAHPFSLAVFED-KVFWTDII  603 (699)
T ss_dssp             ECTTTCCEEEEETTTTEEEEECSSSS---CCEEECCCSSSCSSCCCCEEETT-EEEEECST
T ss_pred             EeccCCEEEEEecCCCeEEEEccCCC---ceEEEEecCCcCCCceEeEEECC-EEEEEeCC
Confidence            99998889999999999999998763   22334321  2246899999875 67777754

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.61  E-value=1.5e-12  Score=118.00  Aligned_cols=242  Identities=13%  Similarity=0.099  Sum_probs=158.2

Q ss_pred             CCCCceEEEeeCCCeEEEEec-CCEEEEEEcCCCee-EEeeccCCCcccC-eEECCCCCEEEEeCCC----cEEEEcC-C
Q 018474           51 VNHPEDVSVVVSKGALYTATR-DGWVKYFILHNETL-VNWKHIDSQSLLG-LTTTKDGGVILCDNEK----GLLKVTE-E  122 (355)
Q Consensus        51 ~~~p~~i~~d~~~g~l~~~~~-~g~i~~~~~~~g~~-~~~~~~~~~p~~g-l~~d~~g~L~v~~~~~----gl~~~~~-~  122 (355)
                      ...| ++++++++..+|++.. ++.|+.+|..+++. .........|. . ++++++|+.+++....    .+..++. +
T Consensus        40 ~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~  117 (331)
T 3u4y_A           40 YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSM-ADVDITPDDQFAVTVTGLNHPFNMQSYSFLK  117 (331)
T ss_dssp             CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCC-CCEEECTTSSEEEECCCSSSSCEEEEEETTT
T ss_pred             CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCc-cceEECCCCCEEEEecCCCCcccEEEEECCC
Confidence            3556 9999977777898876 78999999988875 44444455677 6 9999999844454444    4777774 5


Q ss_pred             C--eEEEcCCcCCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCC-CeEEEEeCCCCeEE----Eeecccccccc
Q 018474          123 G--VEAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPY-GQLRKYDPKLKETT----VLHEGFYFANG  194 (355)
Q Consensus       123 g--~~~~~~~~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~-g~l~~~dp~~~~~~----~~~~~~~~png  194 (355)
                      +  +..+... ..++++++++||+ +|+++...               .. -.+|.+++. +.+.    ........|.+
T Consensus       118 ~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~---------------~~~i~~~~~~~~-g~~~~~~~~~~~~~~~~~~  180 (331)
T 3u4y_A          118 NKFISTIPIP-YDAVGIAISPNGNGLILIDRSS---------------ANTVRRFKIDAD-GVLFDTGQEFISGGTRPFN  180 (331)
T ss_dssp             TEEEEEEECC-TTEEEEEECTTSSCEEEEEETT---------------TTEEEEEEECTT-CCEEEEEEEEECSSSSEEE
T ss_pred             CCeEEEEECC-CCccceEECCCCCEEEEEecCC---------------CceEEEEEECCC-CcEeecCCccccCCCCccc
Confidence            5  3433332 5689999999995 88886541               11 234444432 2221    11233456899


Q ss_pred             EEEeCCCCEEEEEeCCCCeEEEEEeCCCCC-cceeEecccCCCCcCceEECCCCC-EEEEeecCCchhhHhhhcchhHHH
Q 018474          195 IALSKNEDFVVVCESWKFRCRRYWLKGDRA-GILDAFIENLPGGPDNINLAPDGS-FWIGLIKMNQTGVRAIQKCREKWE  272 (355)
Q Consensus       195 i~~~~dg~~l~v~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~  272 (355)
                      ++++|||+.+|++....+.|..|+++..+. .....+.  ....|.+++++++|+ +|++...                 
T Consensus       181 ~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~--~~~~~~~~~~spdg~~l~v~~~~-----------------  241 (331)
T 3u4y_A          181 ITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG--TNNLPGTIVVSRDGSTVYVLTES-----------------  241 (331)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE--CSSCCCCEEECTTSSEEEEECSS-----------------
T ss_pred             eEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc--CCCCCceEEECCCCCEEEEEEcC-----------------
Confidence            999999999999998889999999865432 1122222  234688999999998 6776543                 


Q ss_pred             HHHhccchhhcccCCCCCCceEEEEEeCCCCeE--EEEEECC---CCCcccceeEEE--EeCCEEEEeecCCCeEEEeeC
Q 018474          273 LLDAYPGLISLLLPMGSDAGARVVKVDGNDGKI--IRDFNDP---DATYISFVTSAA--EFDGNLYLASLQSNFIGILPL  345 (355)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~--~~~~~~~---~g~~~~~~~~~~--~~~g~L~v~~~~~~~i~~~~~  345 (355)
                                         .+.|..+|.++|+.  +..+...   ..........+.  .++..||+++..++.|.++++
T Consensus       242 -------------------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~  302 (331)
T 3u4y_A          242 -------------------TVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTI  302 (331)
T ss_dssp             -------------------EEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             -------------------CCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEe
Confidence                               14688899856776  3333322   111111112233  345789999998999999998


Q ss_pred             CCCC
Q 018474          346 DGPE  349 (355)
Q Consensus       346 ~~~~  349 (355)
                      ....
T Consensus       303 ~~~~  306 (331)
T 3u4y_A          303 SGKV  306 (331)
T ss_dssp             TSCE
T ss_pred             cCCc
Confidence            7643

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.59  E-value=7.4e-14  Score=125.71  Aligned_cols=180  Identities=9%  Similarity=0.080  Sum_probs=130.3

Q ss_pred             CCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeecc-----CCCcccCeEECCCCCEEEEeCC------------C
Q 018474           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI-----DSQSLLGLTTTKDGGVILCDNE------------K  114 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~-----~~~p~~gl~~d~~g~L~v~~~~------------~  114 (355)
                      ..|.+++++ .+|.+|++. +++|+++++++++++.+...     ..+++ ++++|++|++|+++..            .
T Consensus        54 ~~~~~i~~~-~dG~l~v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~-di~~d~dG~l~~~~~~~~~~~~~~~~~~~  130 (297)
T 3g4e_A           54 APVSSVALR-QSGGYVATI-GTKFCALNWKEQSAVVLATVDNDKKNNRFN-DGKVDPAGRYFAGTMAEETAPAVLERHQG  130 (297)
T ss_dssp             SCEEEEEEB-TTSSEEEEE-TTEEEEEETTTTEEEEEEECCTTCSSEEEE-EEEECTTSCEEEEEEECCSBTTBCCTTCE
T ss_pred             CceEEEEEC-CCCCEEEEE-CCeEEEEECCCCcEEEEEecCCCCCCCCCC-CEEECCCCCEEEecCCcccccccccCCCc
Confidence            568899999 566699887 56799999988888766432     23577 8999999999998732            3


Q ss_pred             cEEEEcCCC-eEEEcCCcCCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEe--CCCCeEE---Eee-
Q 018474          115 GLLKVTEEG-VEAIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYD--PKLKETT---VLH-  186 (355)
Q Consensus       115 gl~~~~~~g-~~~~~~~~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~d--p~~~~~~---~~~-  186 (355)
                      +++++++++ .+.+......||++++++|| .+|++++.                 .+.|++|+  +.++++.   .+. 
T Consensus       131 ~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~-----------------~~~i~~~~~d~~~G~~~~~~~~~~  193 (297)
T 3g4e_A          131 ALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSL-----------------SYSVDAFDYDLQTGQISNRRSVYK  193 (297)
T ss_dssp             EEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGG-----------------GTEEEEEEECTTTCCEEEEEEEEE
T ss_pred             EEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCC-----------------CCcEEEEeccCCCCcccCcEEEEE
Confidence            589998767 55554444789999999999 59998764                 45677775  4566542   222 


Q ss_pred             --ccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCC-CCcCceEEC-CCC-CEEEEeecC
Q 018474          187 --EGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLP-GGPDNINLA-PDG-SFWIGLIKM  256 (355)
Q Consensus       187 --~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-g~p~~i~~d-~~G-~lwv~~~~~  256 (355)
                        .....|.|++++++|+ +|++....++|.+|+.++.+.  .. .+ ..+ ..|.++++. +++ .|||++...
T Consensus       194 ~~~~~~~p~g~~~d~~G~-lwva~~~~~~v~~~d~~tG~~--~~-~i-~~p~~~~t~~~f~g~d~~~L~vt~~~~  263 (297)
T 3g4e_A          194 LEKEEQIPDGMCIDAEGK-LWVACYNGGRVIRLDPVTGKR--LQ-TV-KLPVDKTTSCCFGGKNYSEMYVTCARD  263 (297)
T ss_dssp             CCGGGCEEEEEEEBTTSC-EEEEEETTTEEEEECTTTCCE--EE-EE-ECSSSBEEEEEEESGGGCEEEEEEBCT
T ss_pred             CCCCCCCCCeeEECCCCC-EEEEEcCCCEEEEEcCCCceE--EE-EE-ECCCCCceEEEEeCCCCCEEEEEcCCc
Confidence              1235799999999997 999988888999999853221  11 11 223 357888886 555 599998764

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.59  E-value=3.4e-12  Score=116.44  Aligned_cols=220  Identities=16%  Similarity=0.148  Sum_probs=153.7

Q ss_pred             CCCceEEEeeCCCeEEEEec-CCEEEEEEcCCCeeEEeeccC--C--------CcccCeEECCCCC-EEEEeC--CCcEE
Q 018474           52 NHPEDVSVVVSKGALYTATR-DGWVKYFILHNETLVNWKHID--S--------QSLLGLTTTKDGG-VILCDN--EKGLL  117 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~-~g~i~~~~~~~g~~~~~~~~~--~--------~p~~gl~~d~~g~-L~v~~~--~~gl~  117 (355)
                      ..|.+++++++++.+|++.. ++.|..+|.++++........  .        .|. +++++++|+ +|+++.  .+.++
T Consensus        89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~~i~  167 (353)
T 3vgz_A           89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPR-ELVADDATNTVYISGIGKESVIW  167 (353)
T ss_dssp             SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEE-EEEEETTTTEEEEEEESSSCEEE
T ss_pred             CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCc-eEEECCCCCEEEEEecCCCceEE
Confidence            56999999977777888766 689999999888764433221  1        267 899998886 888873  23488


Q ss_pred             EEcC-CC--eEEEcCCcCCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecc-----
Q 018474          118 KVTE-EG--VEAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG-----  188 (355)
Q Consensus       118 ~~~~-~g--~~~~~~~~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~-----  188 (355)
                      .++. ++  ...+......+++++++++|+ +|+++.                  .+.++.||+.+++.......     
T Consensus       168 ~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~------------------~~~i~~~d~~~~~~~~~~~~~~~~~  229 (353)
T 3vgz_A          168 VVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNA------------------DGELITIDTADNKILSRKKLLDDGK  229 (353)
T ss_dssp             EEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECT------------------TSEEEEEETTTTEEEEEEECCCSSS
T ss_pred             EEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcC------------------CCeEEEEECCCCeEEEEEEcCCCCC
Confidence            8884 56  444442335689999999985 777643                  35788999988876543321     


Q ss_pred             ccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCC-EEEEeecCCchhhHhhhcc
Q 018474          189 FYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGS-FWIGLIKMNQTGVRAIQKC  267 (355)
Q Consensus       189 ~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~  267 (355)
                      ...+.+++++||++.+|+++...+.|..|+.+..+.  ...+.  . +.+.++.++++|+ +|++....           
T Consensus       230 ~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~--~~~~~--~-~~~~~~~~s~dg~~l~v~~~~~-----------  293 (353)
T 3vgz_A          230 EHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNI--LAKVA--A-PESLAVLFNPARNEAYVTHRQA-----------  293 (353)
T ss_dssp             CCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCE--EEEEE--C-SSCCCEEEETTTTEEEEEETTT-----------
T ss_pred             CcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcE--EEEEE--c-CCCceEEECCCCCEEEEEECCC-----------
Confidence            234677999999999999998889999999854322  11121  1 2357789999997 78877431           


Q ss_pred             hhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEe--CCEEEEeecC
Q 018474          268 REKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF--DGNLYLASLQ  336 (355)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~--~g~L~v~~~~  336 (355)
                                               +.|..+|.++++....+..+.     .+..+...  +..||+++..
T Consensus       294 -------------------------~~v~~~d~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          294 -------------------------GKVSVIDAKSYKVVKTFDTPT-----HPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             -------------------------TEEEEEETTTTEEEEEEECCS-----EEEEEEECTTSCEEEEEEEC
T ss_pred             -------------------------CeEEEEECCCCeEEEEEecCC-----CCCeEEEcCCCCEEEEEEcc
Confidence                                     468889986788877776533     34445543  3569998764

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.57  E-value=3.7e-14  Score=142.41  Aligned_cols=224  Identities=13%  Similarity=0.120  Sum_probs=156.5

Q ss_pred             CCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECC-CCCEEEEeCC-CcEEEEcC-C----C-eEEE-cCCcCC
Q 018474           63 KGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTK-DGGVILCDNE-KGLLKVTE-E----G-VEAI-VPDASF  133 (355)
Q Consensus        63 ~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~-~g~L~v~~~~-~gl~~~~~-~----g-~~~~-~~~~~~  133 (355)
                      ...|+++.. +.|++++..+.+...+......|. ++++|+ +++||+++.. +.|++++. .    . .+.+ ......
T Consensus       377 ~~~ll~~~~-~~I~~id~~~~~~~~~~~~~~~p~-gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~  454 (699)
T 1n7d_A          377 IAYLFFTNR-HEVRKMTLDRSEYTSLIPNLRNVV-ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQA  454 (699)
T ss_dssp             CCCBCCCCT-TC-CEECTTSCCEECCSCCCTTCC-CCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--
T ss_pred             ceeEEecCc-cceEEEeCCCCcceeeeccCcceE-EEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCC
Confidence            344555443 568889887666665555556799 999996 5789999876 45888874 2    2 2222 223367


Q ss_pred             cccEEEcc-CCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee-ccccccccEEEeCCCCEEEEEeCCC
Q 018474          134 TNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFYFANGIALSKNEDFVVVCESWK  211 (355)
Q Consensus       134 ~~~l~~d~-dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~-~~~~~pngi~~~~dg~~l~v~~~~~  211 (355)
                      |.+|++|. .|+||++|..                 .++|++++++++..+.+. .++..|++|+++|++..|||++...
T Consensus       455 P~glavD~~~g~LY~tD~~-----------------~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~  517 (699)
T 1n7d_A          455 PDGLAVDWIHSNIYWTDSV-----------------LGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGT  517 (699)
T ss_dssp             CCCEECCCSSSBCEECCTT-----------------TSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSS
T ss_pred             cceEEEEeeCCcEEEEecc-----------------CCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCC
Confidence            99999995 6799999865                 457999998877666554 4567899999999887899999765


Q ss_pred             -CeEEEEEeCCCCCcceeEecccCCCCcCceEECCC-CCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCC
Q 018474          212 -FRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPD-GSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGS  289 (355)
Q Consensus       212 -~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~-G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (355)
                       ++|++++++|...   +.+....-..|++|++|.+ ++||++....                                 
T Consensus       518 ~~~I~~~~~dG~~~---~~l~~~~l~~PnGlavd~~~~~LY~aD~~~---------------------------------  561 (699)
T 1n7d_A          518 PAKIKKGGLNGVDI---YSLVTENIQWPNGITLDLLSGRLYWVDSKL---------------------------------  561 (699)
T ss_dssp             SCCEEBCCSSSCCC---CEESCSSCSSCCCEEECTTTCCEEEEETTT---------------------------------
T ss_pred             CCeEEEEeCCCCCe---eEEEeCCCCCccEEEEeccCCEEEEEecCC---------------------------------
Confidence             7899998876422   2233222346999999965 6899998542                                 


Q ss_pred             CCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeCCEEEEeecCCCeEEEeeCC
Q 018474          290 DAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLD  346 (355)
Q Consensus       290 ~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~  346 (355)
                         ..|.+++. +|...+.+....+. ...+.++..++++||++...+++|.+++..
T Consensus       562 ---~~I~~~d~-dG~~~~~~~~~~~~-~~~P~glavd~~~lywtd~~~~~V~~~d~~  613 (699)
T 1n7d_A          562 ---HSISSIDV-NGGNRKTILEDEKR-LAHPFSLAVFEDKVFWTDIINEAIFSANRL  613 (699)
T ss_dssp             ---TEEEEECS-SSSCCEEECCCSSS-CSSCCCCEEETTEEEEECSTTTCEEEEETT
T ss_pred             ---CeEEEEcc-CCCceEEEEecCCc-CCCceEeEEECCEEEEEeCCCCeEEEEEcc
Confidence               36899998 77655544332221 334556677788999999999999999753

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.56  E-value=3.3e-13  Score=122.85  Aligned_cols=181  Identities=14%  Similarity=0.165  Sum_probs=127.9

Q ss_pred             CCCceEEEeeCCCeEEEEecC-----CEEEEEEcCCCeeEEeec---cCCCcccCeEECCCCCEEEEeCC-------CcE
Q 018474           52 NHPEDVSVVVSKGALYTATRD-----GWVKYFILHNETLVNWKH---IDSQSLLGLTTTKDGGVILCDNE-------KGL  116 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~~-----g~i~~~~~~~g~~~~~~~---~~~~p~~gl~~d~~g~L~v~~~~-------~gl  116 (355)
                      ..|.+++++ .+|.+|+++..     ++|+++++++++...+..   ....+. ++++|++|++|+++..       .++
T Consensus        87 ~~~~~i~~~-~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~-~i~~d~~g~l~v~~~~~~~~~~~~~l  164 (333)
T 2dg1_A           87 ANPAAIKIH-KDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCID-DMVFDSKGGFYFTDFRGYSTNPLGGV  164 (333)
T ss_dssp             SSEEEEEEC-TTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEE-EEEECTTSCEEEEECCCBTTBCCEEE
T ss_pred             CCcceEEEC-CCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCccc-ceEECCCCCEEEEeccccccCCCceE
Confidence            568999999 56788888754     489999997777664432   234688 8999999999999863       469


Q ss_pred             EEEcC-CC-eEEEcCCcCCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCC--CeEEEe-----e
Q 018474          117 LKVTE-EG-VEAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKL--KETTVL-----H  186 (355)
Q Consensus       117 ~~~~~-~g-~~~~~~~~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~--~~~~~~-----~  186 (355)
                      ++++. .+ ++.+......+++++++++|+ +|+++..                 .+.+++||.++  +....+     .
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~-----------------~~~i~~~d~~~~g~~~~~~~~~~~~  227 (333)
T 2dg1_A          165 YYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETT-----------------ANRLHRIALEDDGVTIQPFGATIPY  227 (333)
T ss_dssp             EEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGG-----------------GTEEEEEEECTTSSSEEEEEEEEEE
T ss_pred             EEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCC-----------------CCeEEEEEecCCCcCcccccceEEE
Confidence            99985 44 555443335789999999995 9998643                 45788888742  223221     1


Q ss_pred             --ccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCC--C---CcCceEECCCC-CEEEEeec
Q 018474          187 --EGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLP--G---GPDNINLAPDG-SFWIGLIK  255 (355)
Q Consensus       187 --~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--g---~p~~i~~d~~G-~lwv~~~~  255 (355)
                        .+...|++++++++|+ +|++....++|.+|+.++..   ...+.....  +   .|.+++++++| .||+++..
T Consensus       228 ~~~~~~~~~~i~~d~~G~-l~v~~~~~~~v~~~d~~g~~---~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          228 YFTGHEGPDSCCIDSDDN-LYVAMYGQGRVLVFNKRGYP---IGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             ECCSSSEEEEEEEBTTCC-EEEEEETTTEEEEECTTSCE---EEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             ecCCCCCCCceEECCCCC-EEEEEcCCCEEEEECCCCCE---EEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence              1224689999999998 89988777899999875432   222211110  1   57889998886 69998876

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.55  E-value=1.9e-11  Score=113.40  Aligned_cols=234  Identities=14%  Similarity=0.131  Sum_probs=166.7

Q ss_pred             CCCceEEEeeCCCeEEEEe-cCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCC-CcEEEEcC-CC--eE
Q 018474           52 NHPEDVSVVVSKGALYTAT-RDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNE-KGLLKVTE-EG--VE  125 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~-~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~-~gl~~~~~-~g--~~  125 (355)
                      ..+.++++.+++..+|++. .++.|..+|..+++..........+. +++++++|+ ||++... +.+..++. ++  ..
T Consensus        32 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~-~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~  110 (391)
T 1l0q_A           32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQ-GVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG  110 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEE-EEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCcc-ceEECCCCCEEEEEECCCCEEEEEECCCCeEEE
Confidence            4689999997666776654 68999999998888766555555788 999999987 7777655 45777774 55  33


Q ss_pred             EEcCCcCCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEE
Q 018474          126 AIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFV  204 (355)
Q Consensus       126 ~~~~~~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l  204 (355)
                      .+... ..+.+++++++|+ +|++...                 .+.++.||..+++..........+..+++++|++.+
T Consensus       111 ~~~~~-~~~~~~~~s~dg~~l~~~~~~-----------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l  172 (391)
T 1l0q_A          111 TVKTG-KSPLGLALSPDGKKLYVTNNG-----------------DKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKV  172 (391)
T ss_dssp             EEECS-SSEEEEEECTTSSEEEEEETT-----------------TTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEE
T ss_pred             EEeCC-CCcceEEECCCCCEEEEEeCC-----------------CCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEE
Confidence            33322 5688999999995 7777644                 568999999888776555555667899999999999


Q ss_pred             EEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCC-EEEEeecCCchhhHhhhcchhHHHHHHhccchhhc
Q 018474          205 VVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGS-FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISL  283 (355)
Q Consensus       205 ~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (355)
                      |++....+.|..++++...   ..... .....+..+.++++|+ +|++...                            
T Consensus       173 ~~~~~~~~~v~~~d~~~~~---~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~----------------------------  220 (391)
T 1l0q_A          173 YVANFDSMSISVIDTVTNS---VIDTV-KVEAAPSGIAVNPEGTKAYVTNVD----------------------------  220 (391)
T ss_dssp             EEEETTTTEEEEEETTTTE---EEEEE-ECSSEEEEEEECTTSSEEEEEEEC----------------------------
T ss_pred             EEEeCCCCEEEEEECCCCe---EEEEE-ecCCCccceEECCCCCEEEEEecC----------------------------
Confidence            9998888899999985432   11112 1233467788999996 5666532                            


Q ss_pred             ccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEe--CCEEEEeecCCCeEEEeeCCC
Q 018474          284 LLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF--DGNLYLASLQSNFIGILPLDG  347 (355)
Q Consensus       284 ~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~--~g~L~v~~~~~~~i~~~~~~~  347 (355)
                            ...+.|..+|.++++.+..+....     .+..+...  +..||++....+.|..+++.+
T Consensus       221 ------~~~~~v~~~d~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~  275 (391)
T 1l0q_A          221 ------KYFNTVSMIDTGTNKITARIPVGP-----DPAGIAVTPDGKKVYVALSFXNTVSVIDTAT  275 (391)
T ss_dssp             ------SSCCEEEEEETTTTEEEEEEECCS-----SEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             ------cCCCcEEEEECCCCeEEEEEecCC-----CccEEEEccCCCEEEEEcCCCCEEEEEECCC
Confidence                  112468889985777777776533     23444443  457888888788999888764

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.55  E-value=4.5e-13  Score=120.97  Aligned_cols=180  Identities=11%  Similarity=0.099  Sum_probs=126.6

Q ss_pred             CCCceEEEeeCCCeEEEEec-CCEEEEEEcCCCeeEEeecc-----CCCcccCeEECCCCCEEEEeC-------------
Q 018474           52 NHPEDVSVVVSKGALYTATR-DGWVKYFILHNETLVNWKHI-----DSQSLLGLTTTKDGGVILCDN-------------  112 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~-~g~i~~~~~~~g~~~~~~~~-----~~~p~~gl~~d~~g~L~v~~~-------------  112 (355)
                      ..|.+++++ .+|.+|+++. +++|.++++. |+.+.+...     .+.|+ .+++|++|++|+++.             
T Consensus        86 ~~~~gl~~d-~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~-~i~~d~dG~l~~td~~~g~~~~~~~~~~  162 (305)
T 3dr2_A           86 AFTNGNAVD-AQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPN-DLIVARDGAIWFTDPPFGLRKPSQGCPA  162 (305)
T ss_dssp             SCEEEEEEC-TTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCC-CEEECTTSCEEEECCSGGGSCGGGSCCC
T ss_pred             CccceeeEC-CCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCC-CEEECCCCCEEEeCcCCCcccccccccc
Confidence            568999999 5777998876 4789999984 776655421     24588 999999999999752             


Q ss_pred             -----CCcEEEEcC-CC-eEEEcCCcCCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEE-
Q 018474          113 -----EKGLLKVTE-EG-VEAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT-  183 (355)
Q Consensus       113 -----~~gl~~~~~-~g-~~~~~~~~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~-  183 (355)
                           ..+|+++++ +| ++.+. ....|+++++++||+ ||+++....            ....+.+++|+.+++.+. 
T Consensus       163 ~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~------------~~~~~~i~~~~~~~~~l~~  229 (305)
T 3dr2_A          163 DPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQ------------GHGSVEITAFAWRDGALHD  229 (305)
T ss_dssp             CCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---------------CCCEEEEEEEETTEEEE
T ss_pred             ccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCc------------CCCCCEEEEEEecCCCccC
Confidence                 246999996 67 66655 557899999999995 999976410            001246888876544321 


Q ss_pred             --Eeec-cccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCC-CEEEEeec
Q 018474          184 --VLHE-GFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDG-SFWIGLIK  255 (355)
Q Consensus       184 --~~~~-~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G-~lwv~~~~  255 (355)
                        .+.. ....|+|++++++|+ +|++.  .++|++|+.++.....   +  ..+..+.+++++++| .||+++..
T Consensus       230 ~~~~~~~~~~~pdgi~~d~~G~-lwv~~--~~gv~~~~~~g~~~~~---~--~~~~~~~~~~f~~d~~~L~it~~~  297 (305)
T 3dr2_A          230 RRHFASVPDGLPDGFCVDRGGW-LWSSS--GTGVCVFDSDGQLLGH---I--PTPGTASNCTFDQAQQRLFITGGP  297 (305)
T ss_dssp             EEEEECCSSSCCCSEEECTTSC-EEECC--SSEEEEECTTSCEEEE---E--ECSSCCCEEEECTTSCEEEEEETT
T ss_pred             CeEEEECCCCCCCeEEECCCCC-EEEec--CCcEEEECCCCCEEEE---E--ECCCceeEEEEeCCCCEEEEEcCC
Confidence              2221 235689999999998 88876  4689999986543322   2  123347889998776 59998854

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.55  E-value=3.8e-13  Score=121.96  Aligned_cols=215  Identities=12%  Similarity=0.142  Sum_probs=136.1

Q ss_pred             ceEEEeeCCCeEEEEecCCEEEEEEcCCCeeE-EeeccCCCcccCeEECCCCCEEEEeCCCcEEEEcCCC-e-EEEcCCc
Q 018474           55 EDVSVVVSKGALYTATRDGWVKYFILHNETLV-NWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEEG-V-EAIVPDA  131 (355)
Q Consensus        55 ~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~-~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~~g-~-~~~~~~~  131 (355)
                      .+++.+ .++.+|+++.+  |+++|+ +|+.. .+........ ...++ +|+||+++..++++++++.| . .......
T Consensus        63 ~~~~~~-~~g~l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~-~~~~~-~~~l~v~t~~~~l~~~d~~g~~~~~~~~~~  136 (330)
T 3hxj_A           63 CRPSIG-KDGTIYFGSDK--VYAINP-DGTEKWRFDTKKAIVS-DFTIF-EDILYVTSMDGHLYAINTDGTEKWRFKTKK  136 (330)
T ss_dssp             ECCEET-TTTEECCSSCE--EEEECC-CGGGGGGSCC-----C-CEEEE-TTEEEEECTTSEEEEECTTSCEEEEEECSS
T ss_pred             cceEEe-cCCcEEEecCc--EEEECC-CCcEEEEEECCCCccc-CceEE-CCEEEEEecCCEEEEEcCCCCEEEEEcCCC
Confidence            455666 67788887655  888886 55422 1111111122 34444 78899988777888988546 2 2222222


Q ss_pred             CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEE-eeccccccccEEEeCCCCEEEEEeCC
Q 018474          132 SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV-LHEGFYFANGIALSKNEDFVVVCESW  210 (355)
Q Consensus       132 ~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~-~~~~~~~pngi~~~~dg~~l~v~~~~  210 (355)
                      .....++++++|++|++..                  .++++++|++ ++... ..........+++++++. +|++.  
T Consensus       137 ~~~~~~~~~~~g~l~vgt~------------------~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~-l~v~t--  194 (330)
T 3hxj_A          137 AIYATPIVSEDGTIYVGSN------------------DNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGT-IYFGS--  194 (330)
T ss_dssp             CCCSCCEECTTSCEEEECT------------------TSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCC-EEEES--
T ss_pred             ceeeeeEEcCCCEEEEEcC------------------CCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCE-EEEEe--
Confidence            4566778888889998743                  3589999998 55432 222223345677878887 88775  


Q ss_pred             CCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCC
Q 018474          211 KFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSD  290 (355)
Q Consensus       211 ~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (355)
                       ++|++++.++...  .+ +. ........+..|++|++|+++..                                   
T Consensus       195 -~~l~~~d~~g~~~--~~-~~-~~~~~~~~~~~~~~g~l~v~t~~-----------------------------------  234 (330)
T 3hxj_A          195 -DKVYAINPDGTEK--WN-FY-AGYWTVTRPAISEDGTIYVTSLD-----------------------------------  234 (330)
T ss_dssp             -SSEEEECTTSCEE--EE-EC-CSSCCCSCCEECTTSCEEEEETT-----------------------------------
T ss_pred             -CEEEEECCCCcEE--EE-Ec-cCCcceeceEECCCCeEEEEcCC-----------------------------------
Confidence             7899998433211  11 11 11123566889999999999864                                   


Q ss_pred             CceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEe-CCEEEEeecCCCeEEEeeC
Q 018474          291 AGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-DGNLYLASLQSNFIGILPL  345 (355)
Q Consensus       291 ~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~~  345 (355)
                        ++++++++ +|+.+..+....+.    ...++.+ +|+||+++. .+.|.+++.
T Consensus       235 --~gl~~~~~-~g~~~~~~~~~~~~----~~~~~~~~~g~l~v~t~-~ggl~~~d~  282 (330)
T 3hxj_A          235 --GHLYAINP-DGTEKWRFKTGKRI----ESSPVIGNTDTIYFGSY-DGHLYAINP  282 (330)
T ss_dssp             --TEEEEECT-TSCEEEEEECSSCC----CSCCEECTTSCEEEECT-TCEEEEECT
T ss_pred             --CeEEEECC-CCCEeEEeeCCCCc----cccceEcCCCeEEEecC-CCCEEEECC
Confidence              47999998 99888777664432    2223444 799999997 557888874

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.54  E-value=6.1e-12  Score=115.10  Aligned_cols=188  Identities=15%  Similarity=0.124  Sum_probs=124.2

Q ss_pred             CCCCceEEEeeCCCeEEEEe-cCCEEEEEEcC-CCeeEEeec---cC---------CCcccCeEECCCCCEEEEeCCCc-
Q 018474           51 VNHPEDVSVVVSKGALYTAT-RDGWVKYFILH-NETLVNWKH---ID---------SQSLLGLTTTKDGGVILCDNEKG-  115 (355)
Q Consensus        51 ~~~p~~i~~d~~~g~l~~~~-~~g~i~~~~~~-~g~~~~~~~---~~---------~~p~~gl~~d~~g~L~v~~~~~g-  115 (355)
                      ...|.++++++++..||++. .++.+..++.. +|+......   .+         ..+. +++++++|++|+++...+ 
T Consensus        85 ~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~spdg~l~v~~~~~~~  163 (347)
T 3hfq_A           85 GTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIH-YTDLTPDNRLAVIDLGSDK  163 (347)
T ss_dssp             SCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEE-EEEECTTSCEEEEETTTTE
T ss_pred             CCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCce-EEEECCCCcEEEEeCCCCE
Confidence            46899999997777799888 46888888873 555443321   11         1366 799999999999887654 


Q ss_pred             EEEEc-C-CC-eEEEc---C-CcCCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeec
Q 018474          116 LLKVT-E-EG-VEAIV---P-DASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE  187 (355)
Q Consensus       116 l~~~~-~-~g-~~~~~---~-~~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~  187 (355)
                      +..++ . +| +....   . ....|+++++++||+ +|+++...               ....++.++..+++++....
T Consensus       164 v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~---------------~~v~v~~~~~~~g~~~~~~~  228 (347)
T 3hfq_A          164 VYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELS---------------SQIASLKYDTQTGAFTQLGI  228 (347)
T ss_dssp             EEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT---------------TEEEEEEEETTTTEEEEEEE
T ss_pred             EEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCC---------------CEEEEEEecCCCCceEEeee
Confidence            65565 3 56 44322   1 125788999999996 88876541               11235555655676544321


Q ss_pred             c---------ccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCC-CCcceeEecccCCCCcCceEECCCCC-EEEEeec
Q 018474          188 G---------FYFANGIALSKNEDFVVVCESWKFRCRRYWLKGD-RAGILDAFIENLPGGPDNINLAPDGS-FWIGLIK  255 (355)
Q Consensus       188 ~---------~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~~  255 (355)
                      .         ...|.+++++|||+.+|+++...+.|..|+++.. .......+ ......|.+++++++|+ +|++...
T Consensus       229 ~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~-~~~~~~~~~~~~spdg~~l~v~~~~  306 (347)
T 3hfq_A          229 VKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQI-STEGDFPRDFDLDPTEAFVVVVNQN  306 (347)
T ss_dssp             EESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEE-ECSSSCCCEEEECTTSSEEEEEETT
T ss_pred             eeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEE-ecCCCCcCeEEECCCCCEEEEEEcC
Confidence            1         1346779999999999999988899999998532 11111111 12233589999999997 6666543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.52  E-value=1e-11  Score=112.53  Aligned_cols=229  Identities=13%  Similarity=0.110  Sum_probs=154.9

Q ss_pred             CCCeEEEEec-CCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCC-CcEEEEcC-CC-e-EEEcCCcCCcc
Q 018474           62 SKGALYTATR-DGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNE-KGLLKVTE-EG-V-EAIVPDASFTN  135 (355)
Q Consensus        62 ~~g~l~~~~~-~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~-~gl~~~~~-~g-~-~~~~~~~~~~~  135 (355)
                      .++.+|+... ++.|..+|..+++.......+..+. +++++++|+ ||++... +.++.++. ++ + .........+.
T Consensus         8 ~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~   86 (331)
T 3u4y_A            8 TSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSM   86 (331)
T ss_dssp             CCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCC
T ss_pred             CCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCc
Confidence            5677787654 7899999998888765544445555 899999997 8888764 45888884 55 4 33222225677


Q ss_pred             c-EEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCCCe-
Q 018474          136 D-VIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFR-  213 (355)
Q Consensus       136 ~-l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~-  213 (355)
                      . ++++++|+..++...              ....+.+..||.++++..........|++++++|||+.+|+++...+. 
T Consensus        87 ~~~~~s~dg~~l~~~~~--------------~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~  152 (331)
T 3u4y_A           87 ADVDITPDDQFAVTVTG--------------LNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANT  152 (331)
T ss_dssp             CCEEECTTSSEEEECCC--------------SSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTE
T ss_pred             cceEECCCCCEEEEecC--------------CCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCce
Confidence            7 999999964444322              001227999999888776555555668999999999989999887677 


Q ss_pred             EEEEEeCCCC-Ccce-eEecccCCCCcCceEECCCCC-EEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCC
Q 018474          214 CRRYWLKGDR-AGIL-DAFIENLPGGPDNINLAPDGS-FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSD  290 (355)
Q Consensus       214 i~~~~~~~~~-~~~~-~~~~~~~~g~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (355)
                      |..|+++... .... .... .....|.++.++++|+ +|++....                                  
T Consensus       153 i~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~----------------------------------  197 (331)
T 3u4y_A          153 VRRFKIDADGVLFDTGQEFI-SGGTRPFNITFTPDGNFAFVANLIG----------------------------------  197 (331)
T ss_dssp             EEEEEECTTCCEEEEEEEEE-CSSSSEEEEEECTTSSEEEEEETTT----------------------------------
T ss_pred             EEEEEECCCCcEeecCCccc-cCCCCccceEECCCCCEEEEEeCCC----------------------------------
Confidence            9988886421 1111 1111 2223578899999997 78876431                                  


Q ss_pred             CceEEEEEeCCCCeE---EEEEECCCCCcccceeEEEEe--CCEEEEeecCCCeEEEeeCCC
Q 018474          291 AGARVVKVDGNDGKI---IRDFNDPDATYISFVTSAAEF--DGNLYLASLQSNFIGILPLDG  347 (355)
Q Consensus       291 ~~~~v~~~~~~~g~~---~~~~~~~~g~~~~~~~~~~~~--~g~L~v~~~~~~~i~~~~~~~  347 (355)
                        +.|..+|.++++.   +..+....     .+..+...  +..||+++...+.|.++++.+
T Consensus       198 --~~v~v~d~~~~~~~~~~~~~~~~~-----~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~  252 (331)
T 3u4y_A          198 --NSIGILETQNPENITLLNAVGTNN-----LPGTIVVSRDGSTVYVLTESTVDVFNFNQLS  252 (331)
T ss_dssp             --TEEEEEECSSTTSCEEEEEEECSS-----CCCCEEECTTSSEEEEECSSEEEEEEEETTT
T ss_pred             --CeEEEEECCCCcccceeeeccCCC-----CCceEEECCCCCEEEEEEcCCCEEEEEECCC
Confidence              3588888756776   56665422     23334443  456999888888898888765

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.51  E-value=1.7e-12  Score=123.19  Aligned_cols=201  Identities=10%  Similarity=0.034  Sum_probs=135.8

Q ss_pred             CcccCeEECCC---CCEEEEeCCCcEEEEcC-CC-eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCC
Q 018474           94 QSLLGLTTTKD---GGVILCDNEKGLLKVTE-EG-VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKP  168 (355)
Q Consensus        94 ~p~~gl~~d~~---g~L~v~~~~~gl~~~~~-~g-~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~  168 (355)
                      .|. ++++|++   |+||+++..+.|.+++. ++ ++.+......|+++++|++|+||+++....             ..
T Consensus       140 ~P~-gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~-------------~~  205 (433)
T 4hw6_A          140 NIW-RMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSS-------------DT  205 (433)
T ss_dssp             CCC-EEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSC-------------TT
T ss_pred             CCc-eEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCC-------------cc
Confidence            588 9999974   89999997667999995 77 777766667899999999999999987421             01


Q ss_pred             CCeEEEEeCCCCeE-EEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCC
Q 018474          169 YGQLRKYDPKLKET-TVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDG  247 (355)
Q Consensus       169 ~g~l~~~dp~~~~~-~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G  247 (355)
                      ..+++.+++..+.. ......+..|+++++++++..||+++...++|++++.++..... ..+.......+.++++|++|
T Consensus       206 ~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~-~~~~~~~~~~~~~ia~dpdG  284 (433)
T 4hw6_A          206 NTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTE-EEVMMDTKGSNFHIVWHPTG  284 (433)
T ss_dssp             SEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEE-EEEECSCCSSCEEEEECTTS
T ss_pred             cceEEEEECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEE-EEeccCCCCCcccEEEeCCC
Confidence            12466666543321 11222467899999999444599999999999999986322201 11211222345679999999


Q ss_pred             C-EEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCC---CeE--EEEEECC---CC----
Q 018474          248 S-FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGND---GKI--IRDFNDP---DA----  314 (355)
Q Consensus       248 ~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---g~~--~~~~~~~---~g----  314 (355)
                      + +||+....                                    ..|.+++. +   ++.  ...+...   .|    
T Consensus       285 ~~LYvad~~~------------------------------------~~I~~~~~-d~~~~~~~~~~~~ag~~g~~g~~dg  327 (433)
T 4hw6_A          285 DWAYIIYNGK------------------------------------HCIYRVDY-NRETGKLAVPYIVCGQHSSPGWVDG  327 (433)
T ss_dssp             SEEEEEETTT------------------------------------TEEEEEEB-CTTTCCBCCCEEEEECTTCCCCBCE
T ss_pred             CEEEEEeCCC------------------------------------CEEEEEeC-CCCCcccCcEEEEEecCCCCccCCC
Confidence            8 99998652                                    36888765 3   321  1122211   11    


Q ss_pred             ----CcccceeEEEE----------eCCEEEEeecCCCeEEEeeCC
Q 018474          315 ----TYISFVTSAAE----------FDGNLYLASLQSNFIGILPLD  346 (355)
Q Consensus       315 ----~~~~~~~~~~~----------~~g~L~v~~~~~~~i~~~~~~  346 (355)
                          ..+..+..++.          .+|+||+++..+.+|.++...
T Consensus       328 ~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~  373 (433)
T 4hw6_A          328 MGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPE  373 (433)
T ss_dssp             EGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTT
T ss_pred             cccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECCC
Confidence                12445666766          358999999999999999754

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.50  E-value=1.9e-11  Score=108.97  Aligned_cols=214  Identities=15%  Similarity=0.142  Sum_probs=149.1

Q ss_pred             CCCeEEEEecCCEEEEEEcCCCeeEEeeccC--CCcccCeEECCCCCEEEEeCCCcEEEEcCCC--eEEEcCCc-CCccc
Q 018474           62 SKGALYTATRDGWVKYFILHNETLVNWKHID--SQSLLGLTTTKDGGVILCDNEKGLLKVTEEG--VEAIVPDA-SFTND  136 (355)
Q Consensus        62 ~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~--~~p~~gl~~d~~g~L~v~~~~~gl~~~~~~g--~~~~~~~~-~~~~~  136 (355)
                      +++.++++..++.|+.+|+++|+...-....  ..++ +++++++|+++++ ..++++.++++|  +-.+.... ..+++
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~-~~~~~pdG~ilvs-~~~~V~~~d~~G~~~W~~~~~~~~~~~~   81 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECN-SVAATKAGEILFS-YSKGAKMITRDGRELWNIAAPAGCEMQT   81 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCC-EEEECTTSCEEEE-CBSEEEEECTTSCEEEEEECCTTCEEEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCc-CeEECCCCCEEEe-CCCCEEEECCCCCEEEEEcCCCCccccc
Confidence            3556677777999999999899865322222  2577 8899999999994 466899999877  44443321 35667


Q ss_pred             EEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee--c----cccccccEEEeCCCCEEEEEeCC
Q 018474          137 VIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH--E----GFYFANGIALSKNEDFVVVCESW  210 (355)
Q Consensus       137 l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~--~----~~~~pngi~~~~dg~~l~v~~~~  210 (355)
                      +.+.++|++++++..                ..++++.+|++++.+..+.  .    ....+.+++..++|+ ++++...
T Consensus        82 ~~~~~dG~~lv~~~~----------------~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~-~lv~~~~  144 (276)
T 3no2_A           82 ARILPDGNALVAWCG----------------HPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGN-YLVPLFA  144 (276)
T ss_dssp             EEECTTSCEEEEEES----------------TTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSC-EEEEETT
T ss_pred             cEECCCCCEEEEecC----------------CCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCC-EEEEecC
Confidence            888999999998643                0347888888554433332  1    123467889999998 6677778


Q ss_pred             CCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCC
Q 018474          211 KFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSD  290 (355)
Q Consensus       211 ~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (355)
                      .++|..++.+|+...++     ..++.|.+...+.+|+++|+....                                  
T Consensus       145 ~~~v~~~d~~G~~~w~~-----~~~~~~~~~~~~~~g~~~v~~~~~----------------------------------  185 (276)
T 3no2_A          145 TSEVREIAPNGQLLNSV-----KLSGTPFSSAFLDNGDCLVACGDA----------------------------------  185 (276)
T ss_dssp             TTEEEEECTTSCEEEEE-----ECSSCCCEEEECTTSCEEEECBTT----------------------------------
T ss_pred             CCEEEEECCCCCEEEEE-----ECCCCccceeEcCCCCEEEEeCCC----------------------------------
Confidence            89999999875433222     123457778888999999987552                                  


Q ss_pred             CceEEEEEeCCCCeEEEEEECC--CCCcccceeEEEE-eCCEEEEeec
Q 018474          291 AGARVVKVDGNDGKIIRDFNDP--DATYISFVTSAAE-FDGNLYLASL  335 (355)
Q Consensus       291 ~~~~v~~~~~~~g~~~~~~~~~--~g~~~~~~~~~~~-~~g~L~v~~~  335 (355)
                        +.|+.||+++|+.+-.+...  .+.....++++.. .+|++|++++
T Consensus       186 --~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          186 --HCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             --SEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred             --CeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence              46999999559998888643  2322445666655 4699999986

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.49  E-value=2.3e-11  Score=112.46  Aligned_cols=258  Identities=11%  Similarity=0.071  Sum_probs=154.2

Q ss_pred             CccCceEecCCCCCCCceEEEeeCCCeEEEEecCCEEEEEEcC-CCeeEEeec--cCCCcccCeEECCCCC-EEE--Ee-
Q 018474           39 SMKGLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILH-NETLVNWKH--IDSQSLLGLTTTKDGG-VIL--CD-  111 (355)
Q Consensus        39 ~l~~~~~~~~~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~-~g~~~~~~~--~~~~p~~gl~~d~~g~-L~v--~~-  111 (355)
                      +|+.......+....|.++++++++..||+++.+ .|..++.. +|+......  ..+.|. +++++++|+ ||+  ++ 
T Consensus        27 ~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~-~~~~spdg~~l~~~~~~~  104 (365)
T 1jof_A           27 TCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPR-ANDADTNTRAIFLLAAKQ  104 (365)
T ss_dssp             EEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGG-GGCTTSCCEEEEEEECSS
T ss_pred             CEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCc-cEEECCCCCEEEEEEecC
Confidence            3433333332334679999999777779988877 78888875 777654322  224588 899999998 343  32 


Q ss_pred             ------------CCCcE--EEEcCCC-e-EEEcC----CcCCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCC
Q 018474          112 ------------NEKGL--LKVTEEG-V-EAIVP----DASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYG  170 (355)
Q Consensus       112 ------------~~~gl--~~~~~~g-~-~~~~~----~~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g  170 (355)
                                  ..+.+  +.++.+| + +.+..    ....+++++++|||+ +|+++..                 .+
T Consensus       105 ~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~-----------------~~  167 (365)
T 1jof_A          105 PPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLT-----------------AN  167 (365)
T ss_dssp             TTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT-----------------TT
T ss_pred             CcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCC-----------------CC
Confidence                        22223  3333355 3 22221    226799999999995 7777654                 34


Q ss_pred             eEEEEeCC-CCeEEEee--c---cccccccEEEeCCCCEEEEEeCCCCeEEEEEeCC--CCCcc-eeEecccCC----C-
Q 018474          171 QLRKYDPK-LKETTVLH--E---GFYFANGIALSKNEDFVVVCESWKFRCRRYWLKG--DRAGI-LDAFIENLP----G-  236 (355)
Q Consensus       171 ~l~~~dp~-~~~~~~~~--~---~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~--~~~~~-~~~~~~~~~----g-  236 (355)
                      .++.|+.+ +++.+...  .   ....|.+++++|||+.+|++....+.|..|+++.  .+... .+.+. .++    + 
T Consensus       168 ~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~-~~~~~~~g~  246 (365)
T 1jof_A          168 KLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFP-LIPPGIPDR  246 (365)
T ss_dssp             EEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEE-SSCTTCCCB
T ss_pred             EEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEE-cCCCCcCCc
Confidence            67777766 67654331  1   1356889999999999999988778888887752  11110 11111 111    1 


Q ss_pred             --------CcCceE-ECCCCC-EEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEE
Q 018474          237 --------GPDNIN-LAPDGS-FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKII  306 (355)
Q Consensus       237 --------~p~~i~-~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~  306 (355)
                              .|.+++ +++||+ +|++.......                             ....-.++.+++ +|+..
T Consensus       247 ~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~-----------------------------~~~~i~v~~~~~-~g~~~  296 (365)
T 1jof_A          247 DPETGKGLYRADVCALTFSGKYMFASSRANKFE-----------------------------LQGYIAGFKLRD-CGSIE  296 (365)
T ss_dssp             CTTTSSBSEEEEEEEECTTSSEEEEEEEESSTT-----------------------------SCCEEEEEEECT-TSCEE
T ss_pred             ccccccccccccEEEECCCCCEEEEECCCCCCC-----------------------------CCCeEEEEEECC-CCCEE
Confidence                    366788 999997 56665431100                             000113555555 77754


Q ss_pred             EE---EECCCCCcccceeEEEE---eCCEEEEeecCCCeEEEeeCCCC
Q 018474          307 RD---FNDPDATYISFVTSAAE---FDGNLYLASLQSNFIGILPLDGP  348 (355)
Q Consensus       307 ~~---~~~~~g~~~~~~~~~~~---~~g~L~v~~~~~~~i~~~~~~~~  348 (355)
                      ..   ....... . ....+..   +++.||+++..++.|.+++++..
T Consensus       297 ~~~~~~~~~~~~-~-~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          297 KQLFLSPTPTSG-G-HSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEEEEEECSSCC-T-TCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             EeeeeeecCCCC-c-ccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            32   2222111 1 1112345   56889999988888988877654

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.48  E-value=2.2e-12  Score=117.74  Aligned_cols=178  Identities=15%  Similarity=0.127  Sum_probs=127.1

Q ss_pred             CCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccC-----CCcccCeEECCCCCEEEEeCC-------CcEEEE
Q 018474           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHID-----SQSLLGLTTTKDGGVILCDNE-------KGLLKV  119 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~-----~~p~~gl~~d~~g~L~v~~~~-------~gl~~~  119 (355)
                      ..+.+++++ .+|.+|+++. .+|+++++.+++.+.+....     ..+. .+++|++|++|+++..       .+|+++
T Consensus        90 ~~v~~i~~~-~dg~l~v~~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~-~i~~d~~G~l~v~~~~~~~~~~~~~l~~~  166 (326)
T 2ghs_A           90 FMGSALAKI-SDSKQLIASD-DGLFLRDTATGVLTLHAELESDLPGNRSN-DGRMHPSGALWIGTMGRKAETGAGSIYHV  166 (326)
T ss_dssp             SCEEEEEEE-ETTEEEEEET-TEEEEEETTTCCEEEEECSSTTCTTEEEE-EEEECTTSCEEEEEEETTCCTTCEEEEEE
T ss_pred             CcceEEEEe-CCCeEEEEEC-CCEEEEECCCCcEEEEeeCCCCCCCCCCC-CEEECCCCCEEEEeCCCcCCCCceEEEEE
Confidence            467889999 5778998875 45999999888877664321     2477 8999999999998752       469999


Q ss_pred             cCCC-eEEEcCCcCCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCC--CC-eE---EEee---cc
Q 018474          120 TEEG-VEAIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPK--LK-ET---TVLH---EG  188 (355)
Q Consensus       120 ~~~g-~~~~~~~~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~--~~-~~---~~~~---~~  188 (355)
                      + +| ++.+......++++++++|| .+|+++..                 .+.|++||.+  ++ ++   +.+.   ..
T Consensus       167 ~-~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~-----------------~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~  228 (326)
T 2ghs_A          167 A-KGKVTKLFADISIPNSICFSPDGTTGYFVDTK-----------------VNRLMRVPLDARTGLPTGKAEVFIDSTGI  228 (326)
T ss_dssp             E-TTEEEEEEEEESSEEEEEECTTSCEEEEEETT-----------------TCEEEEEEBCTTTCCBSSCCEEEEECTTS
T ss_pred             e-CCcEEEeeCCCcccCCeEEcCCCCEEEEEECC-----------------CCEEEEEEcccccCCcccCceEEEECCCC
Confidence            8 67 65554433678999999999 58998754                 4578888864  55 32   1221   12


Q ss_pred             ccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCC-CCcCceEEC-CCC-CEEEEeecC
Q 018474          189 FYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLP-GGPDNINLA-PDG-SFWIGLIKM  256 (355)
Q Consensus       189 ~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-g~p~~i~~d-~~G-~lwv~~~~~  256 (355)
                      ...|++++++++|+ +|++....++|.+|+.++...   +.+  ..+ ..|.+++++ +++ .+||++...
T Consensus       229 ~~~p~gi~~d~~G~-lwva~~~~~~v~~~d~~g~~~---~~i--~~~~~~~~~~af~g~d~~~L~vt~~~~  293 (326)
T 2ghs_A          229 KGGMDGSVCDAEGH-IWNARWGEGAVDRYDTDGNHI---ARY--EVPGKQTTCPAFIGPDASRLLVTSARE  293 (326)
T ss_dssp             SSEEEEEEECTTSC-EEEEEETTTEEEEECTTCCEE---EEE--ECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred             CCCCCeeEECCCCC-EEEEEeCCCEEEEECCCCCEE---EEE--ECCCCCcEEEEEecCCCCEEEEEecCC
Confidence            35689999999997 899887778999998754322   222  122 246778887 665 589988764

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.48  E-value=3e-11  Score=111.13  Aligned_cols=242  Identities=15%  Similarity=0.136  Sum_probs=148.6

Q ss_pred             CCCCceEEEeeCCCeEEEEecC----CEE--EEEEcCCCeeEEeec---cCCCcccCeEECCCCCEEEEeCCCc-EEEEc
Q 018474           51 VNHPEDVSVVVSKGALYTATRD----GWV--KYFILHNETLVNWKH---IDSQSLLGLTTTKDGGVILCDNEKG-LLKVT  120 (355)
Q Consensus        51 ~~~p~~i~~d~~~g~l~~~~~~----g~i--~~~~~~~g~~~~~~~---~~~~p~~gl~~d~~g~L~v~~~~~g-l~~~~  120 (355)
                      ...|.++++++++..||+++.+    +.|  +.++..+|+.+.+..   .+..|. .+++ ....||++....+ +..++
T Consensus        49 ~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~-~~~~-dg~~l~~~~~~~~~v~~~~  126 (361)
T 3scy_A           49 VANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPC-YLTT-NGKNIVTANYSGGSITVFP  126 (361)
T ss_dssp             CSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEE-EEEE-CSSEEEEEETTTTEEEEEE
T ss_pred             CCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcE-EEEE-CCCEEEEEECCCCEEEEEE
Confidence            5789999999777789998774    667  455665577665432   345677 8888 3345888876554 55555


Q ss_pred             --CCC-eEEE----cCC----------cCCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeE--EEEeCCCC
Q 018474          121 --EEG-VEAI----VPD----------ASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQL--RKYDPKLK  180 (355)
Q Consensus       121 --~~g-~~~~----~~~----------~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l--~~~dp~~~  180 (355)
                        .++ +..+    ...          ...+++++++|||+ +|+++..                 .+.+  |.++..++
T Consensus       127 ~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~-----------------~~~v~v~~~~~~~~  189 (361)
T 3scy_A          127 IGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLG-----------------TDQIHKFNINPNAN  189 (361)
T ss_dssp             BCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETT-----------------TTEEEEEEECTTCC
T ss_pred             eCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCC-----------------CCEEEEEEEcCCCC
Confidence              244 3211    110          03457799999996 8888754                 2344  44455443


Q ss_pred             ----e-EE-------EeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCC---CCcCceEECC
Q 018474          181 ----E-TT-------VLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLP---GGPDNINLAP  245 (355)
Q Consensus       181 ----~-~~-------~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---g~p~~i~~d~  245 (355)
                          + +.       ........|.+++++|||+.+|+++...+.|..|++++........+. ..+   ..|.++++++
T Consensus       190 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~-~~~~~~~~~~~i~~sp  268 (361)
T 3scy_A          190 ADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVA-ADTVNAQGSGDIHLSP  268 (361)
T ss_dssp             TTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEE-SCSSCCCCEEEEEECT
T ss_pred             cccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEe-cCCCCCCCcccEEECC
Confidence                2 21       112334568899999999999999988889999998643222222221 111   1255889999


Q ss_pred             CCC-EEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEE--EEEECCCCCcccceeE
Q 018474          246 DGS-FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKII--RDFNDPDATYISFVTS  322 (355)
Q Consensus       246 ~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~--~~~~~~~g~~~~~~~~  322 (355)
                      +|+ +|++.....                                 ..-.++.+++++|+..  ..+..  |.   .+..
T Consensus       269 dg~~l~v~~~~~~---------------------------------~~i~v~~~~~~~g~~~~~~~~~~--g~---~~~~  310 (361)
T 3scy_A          269 DGKYLYASNRLKA---------------------------------DGVAIFKVDETNGTLTKVGYQLT--GI---HPRN  310 (361)
T ss_dssp             TSSEEEEEECSSS---------------------------------CEEEEEEECTTTCCEEEEEEEEC--SS---CCCE
T ss_pred             CCCEEEEECCCCC---------------------------------CEEEEEEEcCCCCcEEEeeEecC--CC---CCce
Confidence            998 555553201                                 1124666675356633  33333  32   3344


Q ss_pred             EEEe--CCEEEEeecCCCeEEEeeCCCCCC
Q 018474          323 AAEF--DGNLYLASLQSNFIGILPLDGPEP  350 (355)
Q Consensus       323 ~~~~--~g~L~v~~~~~~~i~~~~~~~~~~  350 (355)
                      +...  +..||+++..++.|.+++++...-
T Consensus       311 ~~~spdg~~l~~~~~~~~~v~v~~~d~~~g  340 (361)
T 3scy_A          311 FIITPNGKYLLVACRDTNVIQIFERDQATG  340 (361)
T ss_dssp             EEECTTSCEEEEEETTTTEEEEEEECTTTC
T ss_pred             EEECCCCCEEEEEECCCCCEEEEEEECCCC
Confidence            5544  467999998899999987765443

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=99.47  E-value=4.8e-11  Score=109.05  Aligned_cols=207  Identities=16%  Similarity=0.243  Sum_probs=133.2

Q ss_pred             CccCceEecCCCCCCCceEEEeeCCCeEEEEec-CCEEEEEEcCCCeeEEeec-------cCCCcccCeEECC----CCC
Q 018474           39 SMKGLTKLGEGCVNHPEDVSVVVSKGALYTATR-DGWVKYFILHNETLVNWKH-------IDSQSLLGLTTTK----DGG  106 (355)
Q Consensus        39 ~l~~~~~~~~~~~~~p~~i~~d~~~g~l~~~~~-~g~i~~~~~~~g~~~~~~~-------~~~~p~~gl~~d~----~g~  106 (355)
                      .....+.+.++ +..|.+|++. .+|.+|++.. .|+|+++++.+++...+..       ..+.+. ||++++    +|.
T Consensus        20 ~~~~~~~va~g-L~~P~~ia~~-pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~Gll-Gia~~Pdf~~~g~   96 (347)
T 3das_A           20 SVKVLRTVATG-LNSPWGLAPL-PGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLL-GIALSPDYASDHM   96 (347)
T ss_dssp             CEEEEEEEECC-CSSEEEEEEC-TTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEE-EEEECTTHHHHCE
T ss_pred             CCceeEEeecC-CCCceEEEEc-CCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCce-eeEeccccccCCE
Confidence            33455677776 8999999999 5778999988 8999999986676554421       234578 999997    488


Q ss_pred             EEEEeC---CCcEEEEc-CC-----C----eEEE----cCC-cCCcccEEEccCCcEEEEeCCCCCCCccccccccccCC
Q 018474          107 VILCDN---EKGLLKVT-EE-----G----VEAI----VPD-ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKP  168 (355)
Q Consensus       107 L~v~~~---~~gl~~~~-~~-----g----~~~~----~~~-~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~  168 (355)
                      ||++..   ...|+++. ..     .    .+.+    ... ..+.+.|++++||.|||+..... .. .....  ....
T Consensus        97 lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~-~~-~~~qd--~~~~  172 (347)
T 3das_A           97 VYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESG-DT-GLSQD--RKSL  172 (347)
T ss_dssp             EEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTT-CG-GGTTC--TTCS
T ss_pred             EEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCC-CC-ccccC--CCCC
Confidence            999632   34688885 22     1    2222    111 15677899999999999864311 00 00000  0123


Q ss_pred             CCeEEEEeCCCC--------eEEEeeccccccccEEEeCCCCEEEEEeCCCC---eEEEEEeCCCCCccee---------
Q 018474          169 YGQLRKYDPKLK--------ETTVLHEGFYFANGIALSKNEDFVVVCESWKF---RCRRYWLKGDRAGILD---------  228 (355)
Q Consensus       169 ~g~l~~~dp~~~--------~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~---~i~~~~~~~~~~~~~~---------  228 (355)
                      .|.|+|+++++.        ..+.+..++.+|+|++++++|+ ||+++.+..   .|.++. .|...+...         
T Consensus       173 ~G~IlRi~~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~-L~~~d~g~~~~deln~i~-~G~nyGwP~~~g~~~~~~  250 (347)
T 3das_A          173 GGKILRMTPDGEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQR-LFASEFGQDTWDELNAIK-PGDNYGWPEAEGKGGGSG  250 (347)
T ss_dssp             TTCEEEECTTSSBCTTCSSTTCCEEEBCCSBCCEEEECTTCC-EEEEECCSSSCEEEEEEC-TTCBCCTTTCCSSCCCTT
T ss_pred             CCEEEEEeCCCCccCCCCCCCCeEEeeCCCCcceEEECCCCC-EEEEecCCCCCceeeEEc-CCCEecCCcccCCCCCcc
Confidence            678999999754        3456778899999999999987 999997654   344443 232111100         


Q ss_pred             ---EecccCC--CCcCceEECCCCCEEEEeec
Q 018474          229 ---AFIENLP--GGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       229 ---~~~~~~~--g~p~~i~~d~~G~lwv~~~~  255 (355)
                         ....-.+  .-|.|+++. +|.+|++...
T Consensus       251 ~~~P~~~~~~~~~ap~G~~~~-~g~~~~~~l~  281 (347)
T 3das_A          251 FHDPVAQWSTDEASPSGIAYA-EGSVWMAGLR  281 (347)
T ss_dssp             CCCCSEEECTTTCCEEEEEEE-TTEEEEEEST
T ss_pred             ccCCcEecCCCCCCCcceEEE-cCceeecccc
Confidence               0000001  246788886 4889998865

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.46  E-value=6.9e-12  Score=119.61  Aligned_cols=182  Identities=15%  Similarity=0.137  Sum_probs=124.5

Q ss_pred             CCCCCceEEE-------eeCCCeEEEEecCC-------EEEEEEcCC-CeeE------EeeccCCCcccCeEECC-CCCE
Q 018474           50 CVNHPEDVSV-------VVSKGALYTATRDG-------WVKYFILHN-ETLV------NWKHIDSQSLLGLTTTK-DGGV  107 (355)
Q Consensus        50 ~~~~p~~i~~-------d~~~g~l~~~~~~g-------~i~~~~~~~-g~~~------~~~~~~~~p~~gl~~d~-~g~L  107 (355)
                      .+..|.+|++       +++++.||++...+       .++.++... |.+.      .+. ...+|+ ++++|+ +|+|
T Consensus       184 ~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~-~~~~p~-giavdp~~g~L  261 (496)
T 3kya_A          184 PTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIA-AYKQCN-GATIHPINGEL  261 (496)
T ss_dssp             SCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEE-EESCCC-CEEECTTTCCE
T ss_pred             ccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeec-cCCCce-EEEEcCCCCeE
Confidence            3567999999       96666799987654       378887543 4442      222 345799 999998 6899


Q ss_pred             EEEeCCCc-EEEEc-C-------CC-e-------------EEEcCC-cCCcccEEEccCCc-EEEEeCCCCCCCcccccc
Q 018474          108 ILCDNEKG-LLKVT-E-------EG-V-------------EAIVPD-ASFTNDVIAASDGT-LYFTVASTKYTPTDFYKD  162 (355)
Q Consensus       108 ~v~~~~~g-l~~~~-~-------~g-~-------------~~~~~~-~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~  162 (355)
                      |+++...+ +++++ .       ++ +             +.+... ...|.+++++++|+ ||++|..           
T Consensus       262 Yvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~-----------  330 (496)
T 3kya_A          262 YFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVIN-----------  330 (496)
T ss_dssp             EEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETT-----------
T ss_pred             EEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCC-----------
Confidence            99998866 88998 4       45 4             222121 25789999999997 8999976           


Q ss_pred             ccccCCCCeEEEE--eCCCCeE---EEeec---------------cccccc-cEEEe-------CCCCEEEEEeCCCCeE
Q 018474          163 MAEGKPYGQLRKY--DPKLKET---TVLHE---------------GFYFAN-GIALS-------KNEDFVVVCESWKFRC  214 (355)
Q Consensus       163 ~~~~~~~g~l~~~--dp~~~~~---~~~~~---------------~~~~pn-gi~~~-------~dg~~l~v~~~~~~~i  214 (355)
                            ..+|+++  |..++.+   +.+..               .+..|. |++++       .++ .||++++..++|
T Consensus       331 ------~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g-~lyVaD~~N~rI  403 (496)
T 3kya_A          331 ------NHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEY-DFYFVDRLNFCV  403 (496)
T ss_dssp             ------TTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCE-EEEEEEGGGTEE
T ss_pred             ------CCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCC-eEEEEECCCCEE
Confidence                  4467774  4444443   22221               234688 78886       455 499999999999


Q ss_pred             EEEEeCCCCCcceeEecc-----------------c-C-----CCCcCceEECCC-CCEEEEeec
Q 018474          215 RRYWLKGDRAGILDAFIE-----------------N-L-----PGGPDNINLAPD-GSFWIGLIK  255 (355)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~-----------------~-~-----~g~p~~i~~d~~-G~lwv~~~~  255 (355)
                      ++++.+|    ...+++.                 + .     -..|.++++|++ |+|||++..
T Consensus       404 r~i~~~G----~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~  464 (496)
T 3kya_A          404 RKVTPEG----IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQV  464 (496)
T ss_dssp             EEECTTC----BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETT
T ss_pred             EEEeCCC----CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCC
Confidence            9998654    2222221                 1 0     024788999996 999999966

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.46  E-value=6.6e-12  Score=113.48  Aligned_cols=193  Identities=14%  Similarity=0.094  Sum_probs=129.4

Q ss_pred             CCcccCeEECCCCCEEEEeCC-CcEEEEcCCC-eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCC
Q 018474           93 SQSLLGLTTTKDGGVILCDNE-KGLLKVTEEG-VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYG  170 (355)
Q Consensus        93 ~~p~~gl~~d~~g~L~v~~~~-~gl~~~~~~g-~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g  170 (355)
                      ..|. ++++|++|+||+++.. +.|+++++++ ..........|++++++++|++|+++..               ....
T Consensus        32 ~~pe-gia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~~~p~gia~~~dG~l~vad~~---------------~~~~   95 (306)
T 2p4o_A           32 TFLE-NLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWN---------------ADSI   95 (306)
T ss_dssp             CCEE-EEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEEC---------------TTSC
T ss_pred             CCcc-eEEECCCCCEEEEeCCCCeEEEECCCCceEEEEeCCCCceeEEEcCCCcEEEEecc---------------CCcc
Confidence            5688 9999999999999955 5688998766 4333222357999999999999999853               1123


Q ss_pred             eEEEEeCCCCeEEEeec--cccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeE---------ecccCCCCcC
Q 018474          171 QLRKYDPKLKETTVLHE--GFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDA---------FIENLPGGPD  239 (355)
Q Consensus       171 ~l~~~dp~~~~~~~~~~--~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~---------~~~~~~g~p~  239 (355)
                      .++++|+.+++++.+..  ...+++|++..+++ .+|+++...++|++++..+... ....         ....+ ..|+
T Consensus        96 ~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~-~~~v~d~~~g~i~~~d~~~~~~-~v~~~~~~~~~~~~~~~~-~~pn  172 (306)
T 2p4o_A           96 PVVSLVKSDGTVETLLTLPDAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQPSG-SIWLEHPMLARSNSESVF-PAAN  172 (306)
T ss_dssp             EEEEEECTTSCEEEEEECTTCSCEEEEEESSSS-EEEEEETTTTEEEEEETTTTEE-EEEEECGGGSCSSTTCCS-CSEE
T ss_pred             eEEEEcCCCCeEEEEEeCCCccccCcccccCCC-cEEEEECCCCeEEEEeCCCCcE-eEEEECCccccccccCCC-CcCC
Confidence            68999988888776543  35678999987655 5999998889999999753210 1100         00111 2477


Q ss_pred             ceEECCCC-CEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCC-CCeE--EEEEECCCCC
Q 018474          240 NINLAPDG-SFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGN-DGKI--IRDFNDPDAT  315 (355)
Q Consensus       240 ~i~~d~~G-~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~g~~--~~~~~~~~g~  315 (355)
                      ++  +++| .+|++....                                    ..|.+|+.+ +|+.  .+.+..-   
T Consensus       173 gi--s~dg~~lyv~d~~~------------------------------------~~I~~~~~~~~g~~~~~~~~~~~---  211 (306)
T 2p4o_A          173 GL--KRFGNFLYVSNTEK------------------------------------MLLLRIPVDSTDKPGEPEIFVEQ---  211 (306)
T ss_dssp             EE--EEETTEEEEEETTT------------------------------------TEEEEEEBCTTSCBCCCEEEEES---
T ss_pred             Cc--CcCCCEEEEEeCCC------------------------------------CEEEEEEeCCCCCCCccEEEecc---
Confidence            77  4455 699988542                                    368888862 1331  1222110   


Q ss_pred             cccceeEEEEe-CCEEEEeecCCCeEEEeeCCC
Q 018474          316 YISFVTSAAEF-DGNLYLASLQSNFIGILPLDG  347 (355)
Q Consensus       316 ~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~~~~  347 (355)
                        ..+..++.+ +|+||+++..+++|.++...+
T Consensus       212 --~~P~gi~vd~dG~l~va~~~~~~V~~~~~~G  242 (306)
T 2p4o_A          212 --TNIDDFAFDVEGNLYGATHIYNSVVRIAPDR  242 (306)
T ss_dssp             --CCCSSEEEBTTCCEEEECBTTCCEEEECTTC
T ss_pred             --CCCCCeEECCCCCEEEEeCCCCeEEEECCCC
Confidence              122334544 589999999999999998664

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.46  E-value=5.4e-12  Score=115.94  Aligned_cols=182  Identities=12%  Similarity=0.104  Sum_probs=127.0

Q ss_pred             CCCCCCceEEEeeCCCeEEEEec------CCEEEEEEcCCCeeE-Eeecc------CCCcccCeEECC-CCCEEEEeC--
Q 018474           49 GCVNHPEDVSVVVSKGALYTATR------DGWVKYFILHNETLV-NWKHI------DSQSLLGLTTTK-DGGVILCDN--  112 (355)
Q Consensus        49 ~~~~~p~~i~~d~~~g~l~~~~~------~g~i~~~~~~~g~~~-~~~~~------~~~p~~gl~~d~-~g~L~v~~~--  112 (355)
                      +.+..|.++++| .++.||+...      .++|+++|+++++.. .+...      ...+. ++++|+ +|.+|+++.  
T Consensus        64 ~~~~~p~gv~~d-~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~-~v~vd~~~g~~yvtd~~~  141 (343)
T 2qe8_A           64 ITFDTVLGIKSD-GNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVN-DLAVDLIHNFVYISDPAP  141 (343)
T ss_dssp             CCCSCEEEEEEC-SSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCC-EEEEETTTTEEEEEECCS
T ss_pred             cceeEeeEEEEc-CCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccc-eEEEecCCCEEEEEcCcc
Confidence            346789999999 5678888764      478999999888843 33221      13468 899995 578999986  


Q ss_pred             -C-CcEEEEcC-CC-eEEEcCC------------------------------cCCcccEEEccCC-cEEEEeCCCCCCCc
Q 018474          113 -E-KGLLKVTE-EG-VEAIVPD------------------------------ASFTNDVIAASDG-TLYFTVASTKYTPT  157 (355)
Q Consensus       113 -~-~gl~~~~~-~g-~~~~~~~------------------------------~~~~~~l~~d~dG-~ly~~d~~~~~~~~  157 (355)
                       . .++++++. ++ ...+...                              ...+++|++++|| .||+++..      
T Consensus       142 ~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~------  215 (343)
T 2qe8_A          142 DDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMH------  215 (343)
T ss_dssp             GGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESS------
T ss_pred             CCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCC------
Confidence             3 56888884 56 4332211                              0236899999999 69998765      


Q ss_pred             cccccccccCCCCeEEEEeCC---CCe---------EEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEe-CCCCC
Q 018474          158 DFYKDMAEGKPYGQLRKYDPK---LKE---------TTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWL-KGDRA  224 (355)
Q Consensus       158 ~~~~~~~~~~~~g~l~~~dp~---~~~---------~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~-~~~~~  224 (355)
                                 ...+++++..   .+.         +... .....|+|++++++|+ +|+++...++|.+|+. ++   
T Consensus       216 -----------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-g~~g~pdgia~d~~G~-l~va~~~~~~V~~~d~~~G---  279 (343)
T 2qe8_A          216 -----------STSMYRIKSADLSNLQLTDAELGSKIERY-SEKPICDGISIDKDHN-IYVGDLAHSAIGVITSADR---  279 (343)
T ss_dssp             -----------CSEEEEEEHHHHTCTTCCHHHHHTTCEEE-EECCSCSCEEECTTCC-EEEEEGGGTEEEEEETTTT---
T ss_pred             -----------CCeEEEEEHHHhcCCCCChhhhhcceEec-ccCCCCceEEECCCCC-EEEEccCCCeEEEEECCCC---
Confidence                       3367887632   110         1111 1223699999999997 9999999999999997 43   


Q ss_pred             cceeEeccc-CCCCcCceEECCCCCEEEEeec
Q 018474          225 GILDAFIEN-LPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       225 ~~~~~~~~~-~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                       +.+.+... ....|++++++++|++||++.+
T Consensus       280 -~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~  310 (343)
T 2qe8_A          280 -AYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQ  310 (343)
T ss_dssp             -EEEEEEECGGGSCEEEEEECTTSCEEEEECC
T ss_pred             -CEEEEEECCceecCCeeEECCCCcEEEEeCc
Confidence             23333321 1246999999999999999876

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.46  E-value=3.2e-12  Score=121.19  Aligned_cols=199  Identities=12%  Similarity=0.057  Sum_probs=134.4

Q ss_pred             CcccCeEECC--CCCEEEEeCCCcEEEEcC-CC-eEEEcCCcCCcccEEEccCCc-EEEEeCCCCCCCccccccccccCC
Q 018474           94 QSLLGLTTTK--DGGVILCDNEKGLLKVTE-EG-VEAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKP  168 (355)
Q Consensus        94 ~p~~gl~~d~--~g~L~v~~~~~gl~~~~~-~g-~~~~~~~~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~  168 (355)
                      .|. +|++|+  +|+||+++..+.|.+++. .+ ++.+......|++++++++|+ ||+++....             ..
T Consensus       138 ~P~-~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~-------------~~  203 (430)
T 3tc9_A          138 GAV-WLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNN-------------ND  203 (430)
T ss_dssp             CCC-EEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSC-------------TT
T ss_pred             CCC-EEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCC-------------cc
Confidence            588 999995  589999997667888885 45 666655557899999999997 999987511             11


Q ss_pred             CCeEEEEeCCCCeE--EEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCC
Q 018474          169 YGQLRKYDPKLKET--TVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPD  246 (355)
Q Consensus       169 ~g~l~~~dp~~~~~--~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~  246 (355)
                      ...++.++++++..  ..+. .+..|++++++|++..+|+++...++|++|+.++....  ..+.......|.++++|++
T Consensus       204 ~~~v~~~~~~g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~--~~~~~~~~~~P~gia~~pd  280 (430)
T 3tc9_A          204 RPNNYILTRESGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT--PLFTIQDSGWEFHIQFHPS  280 (430)
T ss_dssp             SEEEEEEEGGGTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE--EEEECSSSSCCEEEEECTT
T ss_pred             cceEEEEeCCCceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE--EEEEcCCCCcceeEEEcCC
Confidence            22466666543321  2222 46789999999944459999999999999998653221  1111112246999999999


Q ss_pred             CC-EEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCC---eE--EEEEECC-------C
Q 018474          247 GS-FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDG---KI--IRDFNDP-------D  313 (355)
Q Consensus       247 G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g---~~--~~~~~~~-------~  313 (355)
                      |+ +||+....                                    ..|.+++. ++   +.  ...+...       +
T Consensus       281 G~~lyv~d~~~------------------------------------~~I~~~~~-d~~~~~~~~~~~~ag~~g~~g~~d  323 (430)
T 3tc9_A          281 GNYAYIVVVNQ------------------------------------HYILRSDY-DWKTKRLTTPYIVCGQQGAKDWVD  323 (430)
T ss_dssp             SSEEEEEETTT------------------------------------TEEEEEEE-ETTTTEECCCEEEEECTTCBCCBC
T ss_pred             CCEEEEEECCC------------------------------------CEEEEEeC-CcccccccceEEEeccCCCCCCCC
Confidence            98 99988552                                    36777766 43   22  1222221       1


Q ss_pred             C----Cccccee-EEEEe---------CCEEEEeecCCCeEEEeeCC
Q 018474          314 A----TYISFVT-SAAEF---------DGNLYLASLQSNFIGILPLD  346 (355)
Q Consensus       314 g----~~~~~~~-~~~~~---------~g~L~v~~~~~~~i~~~~~~  346 (355)
                      |    ..+..+. .++.+         +|+||+++..+.+|.++..+
T Consensus       324 g~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~~  370 (430)
T 3tc9_A          324 GVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTPQ  370 (430)
T ss_dssp             EEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECTT
T ss_pred             CCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECCC
Confidence            1    1133444 45543         48999999999999999743

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.45  E-value=2.4e-10  Score=103.44  Aligned_cols=182  Identities=9%  Similarity=0.071  Sum_probs=119.6

Q ss_pred             CCCceEEEeeCCCeEEEEec-CCEEEEEEcCCCe---eEEeeccCCCcccCeEECCCCC-EEEEe-CCCcEEEEc-CC-C
Q 018474           52 NHPEDVSVVVSKGALYTATR-DGWVKYFILHNET---LVNWKHIDSQSLLGLTTTKDGG-VILCD-NEKGLLKVT-EE-G  123 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~-~g~i~~~~~~~g~---~~~~~~~~~~p~~gl~~d~~g~-L~v~~-~~~gl~~~~-~~-g  123 (355)
                      ..|.++++++++..+|++.. ++.|..++..++.   ..........+. +++++++|+ ||+++ ..+.+..++ .+ +
T Consensus        84 ~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~  162 (343)
T 1ri6_A           84 GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCH-SANISPDNRTLWVPALKQDRICLFTVSDDG  162 (343)
T ss_dssp             SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBC-CCEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCce-EEEECCCCCEEEEecCCCCEEEEEEecCCC
Confidence            38999999977777888776 7889888874433   222223345688 999999986 78877 334566766 44 6


Q ss_pred             -eEEE-----cC-CcCCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeC--CCCeEEEeec------
Q 018474          124 -VEAI-----VP-DASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDP--KLKETTVLHE------  187 (355)
Q Consensus       124 -~~~~-----~~-~~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp--~~~~~~~~~~------  187 (355)
                       +...     .. ....|++++++++|+ +|+++..                 .+.+..|+.  .+++++....      
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~-----------------~~~i~~~~~~~~~g~~~~~~~~~~~~~  225 (343)
T 1ri6_A          163 HLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL-----------------NSSVDVWELKDPHGNIECVQTLDMMPE  225 (343)
T ss_dssp             CEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETT-----------------TTEEEEEESSCTTSCCEEEEEEECSCT
T ss_pred             ceeeecccccccCCCCCcceEEECCCCCEEEEEeCC-----------------CCEEEEEEecCCCCcEEEEeeccccCc
Confidence             4322     21 125788999999995 8887643                 345666665  3454432211      


Q ss_pred             c---ccccccEEEeCCCCEEEEEeCCCCeEEEEEeCC--CCCcceeEecccCCCCcCceEECCCCC-EEEEe
Q 018474          188 G---FYFANGIALSKNEDFVVVCESWKFRCRRYWLKG--DRAGILDAFIENLPGGPDNINLAPDGS-FWIGL  253 (355)
Q Consensus       188 ~---~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~  253 (355)
                      +   ...+.+++++||++.+|++....+.|..|+++.  ........+  ...+.|.++.++++|+ ++++.
T Consensus       226 ~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~  295 (343)
T 1ri6_A          226 NFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQ--PTETQPRGFNVDHSGKYLIAAG  295 (343)
T ss_dssp             TCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEE--ECSSSCCCEEECTTSSEEEEEC
T ss_pred             cccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeee--cCCCccceEEECCCCCEEEEec
Confidence            1   123446999999999999988888999999862  222222212  1223488999999998 56555

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.43  E-value=1.3e-10  Score=104.88  Aligned_cols=227  Identities=11%  Similarity=-0.013  Sum_probs=150.4

Q ss_pred             CCceEEEeeCCCeEEEEec-CCEEEEEEcCCCeeEEeeccCC------CcccCeEECCCC-CEEEEe------------C
Q 018474           53 HPEDVSVVVSKGALYTATR-DGWVKYFILHNETLVNWKHIDS------QSLLGLTTTKDG-GVILCD------------N  112 (355)
Q Consensus        53 ~p~~i~~d~~~g~l~~~~~-~g~i~~~~~~~g~~~~~~~~~~------~p~~gl~~d~~g-~L~v~~------------~  112 (355)
                      .|.+++++++++.+|++.. ++.|..+|..+++.........      .|. +++++++| .||++.            .
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~~~~~~~~~  113 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLF-GAALSPDGKTLAIYESPVRLELTHFEVQ  113 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTT-CEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccccccc-ceEECCCCCEEEEEeccccccccccccc
Confidence            5999999976668887765 6899999998887654333222      688 99999998 578875            2


Q ss_pred             CCcEEEEcC-CC--eEEEcCCcCCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecc
Q 018474          113 EKGLLKVTE-EG--VEAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG  188 (355)
Q Consensus       113 ~~gl~~~~~-~g--~~~~~~~~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~  188 (355)
                      .+.+..++. ++  ...+.. ...+.+++++++|+ ||+++                    +.++.||.++++.......
T Consensus       114 ~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~--------------------~~i~~~d~~~~~~~~~~~~  172 (337)
T 1pby_B          114 PTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLG--------------------RDLHVMDPEAGTLVEDKPI  172 (337)
T ss_dssp             CCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEES--------------------SSEEEEETTTTEEEEEECS
T ss_pred             CceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEeC--------------------CeEEEEECCCCcEeeeeec
Confidence            356888884 55  333333 25688999999995 88872                    2588999988876544333


Q ss_pred             ccccccEEEeCCCCEEEEEeCCCC-----------------------eEEEEEeCCCCCcceeEecccCCCCcCceEECC
Q 018474          189 FYFANGIALSKNEDFVVVCESWKF-----------------------RCRRYWLKGDRAGILDAFIENLPGGPDNINLAP  245 (355)
Q Consensus       189 ~~~pngi~~~~dg~~l~v~~~~~~-----------------------~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~  245 (355)
                      ...+..++++||++.+|++....+                       .|+.++++..+.... .+ ......|.++.+++
T Consensus       173 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~-~~-~~~~~~~~~~~~s~  250 (337)
T 1pby_B          173 QSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMR-EV-RIMDVFYFSTAVNP  250 (337)
T ss_dssp             TTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEE-EE-EECSSCEEEEEECT
T ss_pred             cccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEe-ec-CCCCCceeeEEECC
Confidence            332345688999988877665444                       356777654332211 11 12233567789999


Q ss_pred             CCC-EEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEE
Q 018474          246 DGS-FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAA  324 (355)
Q Consensus       246 ~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~  324 (355)
                      +|+ +|++  .                                     +.|..+|.++++....+....     .+..+.
T Consensus       251 dg~~l~~~--~-------------------------------------~~v~~~d~~~~~~~~~~~~~~-----~~~~~~  286 (337)
T 1pby_B          251 AKTRAFGA--Y-------------------------------------NVLESFDLEKNASIKRVPLPH-----SYYSVN  286 (337)
T ss_dssp             TSSEEEEE--E-------------------------------------SEEEEEETTTTEEEEEEECSS-----CCCEEE
T ss_pred             CCCEEEEe--C-------------------------------------CeEEEEECCCCcCcceecCCC-----ceeeEE
Confidence            997 5555  2                                     258889986777777776432     233444


Q ss_pred             Ee--CCEEEEeecCCCeEEEeeCCCC
Q 018474          325 EF--DGNLYLASLQSNFIGILPLDGP  348 (355)
Q Consensus       325 ~~--~g~L~v~~~~~~~i~~~~~~~~  348 (355)
                      ..  +..||+++. .+.|.++++.+-
T Consensus       287 ~s~dg~~l~~~~~-~~~i~v~d~~~~  311 (337)
T 1pby_B          287 VSTDGSTVWLGGA-LGDLAAYDAETL  311 (337)
T ss_dssp             ECTTSCEEEEESB-SSEEEEEETTTC
T ss_pred             ECCCCCEEEEEcC-CCcEEEEECcCC
Confidence            43  356888754 778888887653

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.42  E-value=1.7e-11  Score=107.86  Aligned_cols=198  Identities=11%  Similarity=0.074  Sum_probs=136.6

Q ss_pred             CcccCeEECCCCCEEEEeCC---CcEEEEc-CCC--eEEEcCC-cCCcccEEEccCCcEEEEeCCCCCCCcccccccccc
Q 018474           94 QSLLGLTTTKDGGVILCDNE---KGLLKVT-EEG--VEAIVPD-ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEG  166 (355)
Q Consensus        94 ~p~~gl~~d~~g~L~v~~~~---~gl~~~~-~~g--~~~~~~~-~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~  166 (355)
                      .++ ||+++++|+||+++..   ..+..+| ++|  +..+... ..+..+++++ .++||+++..               
T Consensus        22 f~~-Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~-g~~lyv~t~~---------------   84 (266)
T 2iwa_A           22 FTQ-GLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL-NEKLYQVVWL---------------   84 (266)
T ss_dssp             CEE-EEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEETT---------------
T ss_pred             Ccc-cEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe-CCEEEEEEec---------------
Confidence            478 9999988999999742   4588888 477  4444322 2455667776 3589999765               


Q ss_pred             CCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCC-cceeEecccCC-CCcCceEEC
Q 018474          167 KPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRA-GILDAFIENLP-GGPDNINLA  244 (355)
Q Consensus       167 ~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~-g~p~~i~~d  244 (355)
                        .+.++.||+++.+...-..-. .|.|..+++||+.+|+++ +.+.|+.+|.++.+. ....+-....+ ..|+++.+.
T Consensus        85 --~~~v~viD~~t~~v~~~i~~g-~~~g~glt~Dg~~l~vs~-gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~  160 (266)
T 2iwa_A           85 --KNIGFIYDRRTLSNIKNFTHQ-MKDGWGLATDGKILYGSD-GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI  160 (266)
T ss_dssp             --CSEEEEEETTTTEEEEEEECC-SSSCCEEEECSSSEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE
T ss_pred             --CCEEEEEECCCCcEEEEEECC-CCCeEEEEECCCEEEEEC-CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE
Confidence              568999999888654333222 478888999999999998 688999999865332 11111100111 236677766


Q ss_pred             CCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCC---------C
Q 018474          245 PDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDA---------T  315 (355)
Q Consensus       245 ~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g---------~  315 (355)
                       +|.+|+.....                                    +.|.++|+++|+.+..+..+..         .
T Consensus       161 -dg~lyvn~~~~------------------------------------~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~  203 (266)
T 2iwa_A          161 -NGEVWANIWQT------------------------------------DCIARISAKDGTLLGWILLPNLRKKLIDEGFR  203 (266)
T ss_dssp             -TTEEEEEETTS------------------------------------SEEEEEETTTCCEEEEEECHHHHHHHHHTTCT
T ss_pred             -CCEEEEecCCC------------------------------------CeEEEEECCCCcEEEEEECCCccccccccccc
Confidence             68999887542                                    4799999989999888865310         0


Q ss_pred             cccceeEEEEe--CCEEEEeecCCCeEEEeeCCCCC
Q 018474          316 YISFVTSAAEF--DGNLYLASLQSNFIGILPLDGPE  349 (355)
Q Consensus       316 ~~~~~~~~~~~--~g~L~v~~~~~~~i~~~~~~~~~  349 (355)
                      ......+++.+  +++||+++...+.|.++++....
T Consensus       204 ~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~  239 (266)
T 2iwa_A          204 DIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR  239 (266)
T ss_dssp             TCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred             ccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence            01244566655  47999999999999999987654

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.42  E-value=1.7e-10  Score=104.44  Aligned_cols=239  Identities=13%  Similarity=0.101  Sum_probs=149.4

Q ss_pred             CCCCceEEEeeCCCeEEEEecC-CEEEEEEcC--CCeeEEee--ccCCCcccCeEECCCCC-EEEEeCCCc-EEEEcC-C
Q 018474           51 VNHPEDVSVVVSKGALYTATRD-GWVKYFILH--NETLVNWK--HIDSQSLLGLTTTKDGG-VILCDNEKG-LLKVTE-E  122 (355)
Q Consensus        51 ~~~p~~i~~d~~~g~l~~~~~~-g~i~~~~~~--~g~~~~~~--~~~~~p~~gl~~d~~g~-L~v~~~~~g-l~~~~~-~  122 (355)
                      ...|.++++++++..+|++..+ +.|..++..  +++.+...  .....|. +++++++|+ ||++....+ +..++. +
T Consensus        37 ~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~  115 (343)
T 1ri6_A           37 PGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLT-HISTDHQGQFVFVGSYNAGNVSVTRLED  115 (343)
T ss_dssp             SSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCS-EEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             CCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCc-EEEEcCCCCEEEEEecCCCeEEEEECCC
Confidence            3679999999777779988875 888887765  66654332  2234688 999999997 778776545 555553 3


Q ss_pred             C--eEE--EcCCcCCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCC-CeEEEee------cccc
Q 018474          123 G--VEA--IVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKL-KETTVLH------EGFY  190 (355)
Q Consensus       123 g--~~~--~~~~~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~-~~~~~~~------~~~~  190 (355)
                      +  .+.  .......+++++++++| .+|+++..                 .+.+..||..+ ++.....      ....
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-----------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~  178 (343)
T 1ri6_A          116 GLPVGVVDVVEGLDGCHSANISPDNRTLWVPALK-----------------QDRICLFTVSDDGHLVAQDPAEVTTVEGA  178 (343)
T ss_dssp             TEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGG-----------------GTEEEEEEECTTSCEEEEEEEEEECSTTC
T ss_pred             CccccccccccCCCCceEEEECCCCCEEEEecCC-----------------CCEEEEEEecCCCceeeecccccccCCCC
Confidence            3  121  11222568999999999 48777533                 35688888765 6554221      2234


Q ss_pred             ccccEEEeCCCCEEEEEeCCCCeEEEEEeCCC--CCcceeEecccCC------CCcCceEECCCCC-EEEEeecCCchhh
Q 018474          191 FANGIALSKNEDFVVVCESWKFRCRRYWLKGD--RAGILDAFIENLP------GGPDNINLAPDGS-FWIGLIKMNQTGV  261 (355)
Q Consensus       191 ~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~------g~p~~i~~d~~G~-lwv~~~~~~~~~~  261 (355)
                      .|.+++++||++.+|++....+.|..|+++..  .......+. ..+      ..+..+.++++|+ +|++....     
T Consensus       179 ~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~-----  252 (343)
T 1ri6_A          179 GPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLD-MMPENFSDTRWAADIHITPDGRHLYACDRTA-----  252 (343)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEE-CSCTTCCSCCCEEEEEECTTSSEEEEEETTT-----
T ss_pred             CcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeecc-ccCccccccCCccceEECCCCCEEEEEecCC-----
Confidence            67889999999999999888889999998532  121111111 111      1234588999996 55555331     


Q ss_pred             HhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCC--CCe--EEEEEECCCCCcccceeEEEEe--CCEEEEeec
Q 018474          262 RAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGN--DGK--IIRDFNDPDATYISFVTSAAEF--DGNLYLASL  335 (355)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~g~--~~~~~~~~~g~~~~~~~~~~~~--~g~L~v~~~  335 (355)
                                                     +.|..++.+  .++  .+..+....     .+..+...  +..||+++.
T Consensus       253 -------------------------------~~i~v~d~~~~~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~~~~  296 (343)
T 1ri6_A          253 -------------------------------SLITVFSVSEDGSVLSKEGFQPTET-----QPRGFNVDHSGKYLIAAGQ  296 (343)
T ss_dssp             -------------------------------TEEEEEEECTTSCCEEEEEEEECSS-----SCCCEEECTTSSEEEEECT
T ss_pred             -------------------------------CEEEEEEEcCCCCceEEeeeecCCC-----ccceEEECCCCCEEEEecC
Confidence                                           245555542  222  233333221     13334443  466999887


Q ss_pred             CCCeEEEeeCCCCC
Q 018474          336 QSNFIGILPLDGPE  349 (355)
Q Consensus       336 ~~~~i~~~~~~~~~  349 (355)
                      ..+.|..++++...
T Consensus       297 ~~~~v~v~~~d~~~  310 (343)
T 1ri6_A          297 KSHHISVYEIVGEQ  310 (343)
T ss_dssp             TTCEEEEEEEETTT
T ss_pred             CCCeEEEEEEcCCC
Confidence            78888888665443

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.41  E-value=3.1e-11  Score=111.36  Aligned_cols=215  Identities=16%  Similarity=0.147  Sum_probs=135.3

Q ss_pred             eeEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEcCCC-eEEEc------CCcCCcccEEEccC----CcEEEEeCCC
Q 018474           84 TLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEEG-VEAIV------PDASFTNDVIAASD----GTLYFTVAST  152 (355)
Q Consensus        84 ~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~~g-~~~~~------~~~~~~~~l~~d~d----G~ly~~d~~~  152 (355)
                      +.+.+......|. +|+++++|+|||++..+.|++++ +| .+.+.      .....|++|+++++    |.||+++...
T Consensus        22 ~~~~va~~l~~P~-~ia~~pdG~l~V~e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~   99 (352)
T 2ism_A           22 RVEEVVGGLEVPW-ALAFLPDGGMLIAERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVA   99 (352)
T ss_dssp             CEEEEECCCSCEE-EEEECTTSCEEEEETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEC
T ss_pred             EEEEEECCCCCce-EEEEcCCCeEEEEeCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecC
Confidence            4455555556799 99999999999999877788887 55 43322      12268999999997    7999987531


Q ss_pred             CCCCccccccccccCCCCeEEEEeCCCCe---EEEeec-------cccccccEEEeCCCCEEEEEeC-------------
Q 018474          153 KYTPTDFYKDMAEGKPYGQLRKYDPKLKE---TTVLHE-------GFYFANGIALSKNEDFVVVCES-------------  209 (355)
Q Consensus       153 ~~~~~~~~~~~~~~~~~g~l~~~dp~~~~---~~~~~~-------~~~~pngi~~~~dg~~l~v~~~-------------  209 (355)
                      .            .....+|++++.++++   .+.+..       ....+++++++|||. ||++..             
T Consensus       100 ~------------~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G~~~~~~~~~d~~~  166 (352)
T 2ism_A          100 E------------GGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTTGEVYERELAQDLAS  166 (352)
T ss_dssp             T------------TSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEECCCTTCGGGGGCTTC
T ss_pred             C------------CCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEECCCCCCccccCCCC
Confidence            0            0012478888876442   222222       234688999999996 999863             


Q ss_pred             CCCeEEEEEeCCCCC----------cceeEecccCCCCcCceEECC-CCCEEEEeecCCchhhHhhhcchhHHHHHHhcc
Q 018474          210 WKFRCRRYWLKGDRA----------GILDAFIENLPGGPDNINLAP-DGSFWIGLIKMNQTGVRAIQKCREKWELLDAYP  278 (355)
Q Consensus       210 ~~~~i~~~~~~~~~~----------~~~~~~~~~~~g~p~~i~~d~-~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (355)
                      ..++|+|++.++.-.          ...+.+...+ ..|.++++|+ +|+||++..+....           +.    . 
T Consensus       167 ~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~-----------~~----~-  229 (352)
T 2ism_A          167 LGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGE-----------QG----Y-  229 (352)
T ss_dssp             SSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC----------------------
T ss_pred             CceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCC-----------CC----C-
Confidence            236899999876210          1223333222 2389999998 79999999764210           00    0 


Q ss_pred             chhhcccCCCCCCceEEEEEeCCCCe-----------------EEEEEECCCCCcccceeEEEEeCCEEEEeecCCCeEE
Q 018474          279 GLISLLLPMGSDAGARVVKVDGNDGK-----------------IIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIG  341 (355)
Q Consensus       279 ~~~~~~~~~~~~~~~~v~~~~~~~g~-----------------~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~  341 (355)
                                  +...|.++.+ .+.                 ....+ . .   ...+++++..+|+||+++..+.+|.
T Consensus       230 ------------~~dei~~i~~-G~nyGwp~~~g~~~~~~~~~p~~~~-~-~---~~ap~G~~~~~G~l~v~~~~~~~v~  291 (352)
T 2ism_A          230 ------------GHDEVNLIVP-GGNYGWPRVVGRGNDPRYRDPLYFW-P-Q---GFPPGNLAFFRGDLYVAGLRGQALL  291 (352)
T ss_dssp             ------------CCCEEEEECT-TCBCCTTTCCSCCCCTTSCCCSEEC-T-T---CCCEEEEEEETTEEEEEETTTTEEE
T ss_pred             ------------CCeEEEEecc-CCcCCCCcccCCCCCCCCcCCeEec-C-C---CCCCcceEEECCEEEEEECCCCEEE
Confidence                        0012333333 210                 01111 1 0   1245567778899999999999999


Q ss_pred             EeeCCCC
Q 018474          342 ILPLDGP  348 (355)
Q Consensus       342 ~~~~~~~  348 (355)
                      ++++++.
T Consensus       292 ~v~~~~~  298 (352)
T 2ism_A          292 RLVLEGE  298 (352)
T ss_dssp             EEEEEEE
T ss_pred             EEEECCC
Confidence            9988654

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=99.41  E-value=2.6e-11  Score=111.89  Aligned_cols=161  Identities=13%  Similarity=0.185  Sum_probs=107.5

Q ss_pred             eEecCCCCCCCceEEEeeCCCe-EEEEecCCEEEEEEcCCCeeE-Eee-------ccCCCcccCeEECC----CCCEEEE
Q 018474           44 TKLGEGCVNHPEDVSVVVSKGA-LYTATRDGWVKYFILHNETLV-NWK-------HIDSQSLLGLTTTK----DGGVILC  110 (355)
Q Consensus        44 ~~~~~~~~~~p~~i~~d~~~g~-l~~~~~~g~i~~~~~~~g~~~-~~~-------~~~~~p~~gl~~d~----~g~L~v~  110 (355)
                      +.+..+ +..|.+|+++ .+|. +|++...|+|+++++ +++.. .+.       ...+.+. +|++++    ++.||++
T Consensus        11 ~~va~~-l~~P~~i~~~-pdG~~l~V~e~~G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~-gia~~pdf~~~g~lYv~   86 (353)
T 2g8s_A           11 EVLQDK-LDHPWALAFL-PDNHGMLITLRGGELRHWQA-GKGLSAPLSGVPDVWAHGQGGLL-DVVLAPDFAQSRRIWLS   86 (353)
T ss_dssp             EEEEEE-ESSEEEEEEC-STTCCEEEEETTTEEEEEET-TTEECCCCBSCCCCCCSTTCSEE-EEEECTTHHHHCEEEEE
T ss_pred             EEEECC-CCCcEEEEEc-CCCCEEEEEeCCceEEEEeC-CCceeeEecCCcccccCCCCCce-eEEECCCCCCCCEEEEE
Confidence            445443 7899999999 5667 999998999999987 55432 121       1123467 999998    5899998


Q ss_pred             eCC--------CcEEEEc-C-C-C----eEEEcCC-------cCCcccEEEccCCcEEEEeCCCCCCCccccccccccCC
Q 018474          111 DNE--------KGLLKVT-E-E-G----VEAIVPD-------ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKP  168 (355)
Q Consensus       111 ~~~--------~gl~~~~-~-~-g----~~~~~~~-------~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~  168 (355)
                      ...        ..|.++. . . +    .+.+...       ...+++|++++||.||++......  ......  ....
T Consensus        87 ~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~--~~~~q~--~~~~  162 (353)
T 2g8s_A           87 YSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQ--RPTAQD--LDKL  162 (353)
T ss_dssp             EEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTC--GGGGGC--TTSC
T ss_pred             EeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCC--CCccCC--CCCC
Confidence            643        2477775 2 2 2    2222111       145789999999999999754211  000001  1133


Q ss_pred             CCeEEEEeCCCC-------------eEEEeeccccccccEEEeCCCCEEEEEeCCCC
Q 018474          169 YGQLRKYDPKLK-------------ETTVLHEGFYFANGIALSKNEDFVVVCESWKF  212 (355)
Q Consensus       169 ~g~l~~~dp~~~-------------~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~  212 (355)
                      .|.++|+|+++.             ..+.+..++..|.|++++++...||+++...+
T Consensus       163 ~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~  219 (353)
T 2g8s_A          163 QGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPR  219 (353)
T ss_dssp             TTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSB
T ss_pred             CeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCC
Confidence            578999999754             34456678889999999995446999998643

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=99.40  E-value=4.5e-11  Score=110.37  Aligned_cols=200  Identities=12%  Similarity=0.066  Sum_probs=123.5

Q ss_pred             CCCCceEEEeeC---CCeEEEEecC--------CEEEEEEcCCC--e---eEEe----ecc-CCCcccCeEECCCCCEEE
Q 018474           51 VNHPEDVSVVVS---KGALYTATRD--------GWVKYFILHNE--T---LVNW----KHI-DSQSLLGLTTTKDGGVIL  109 (355)
Q Consensus        51 ~~~p~~i~~d~~---~g~l~~~~~~--------g~i~~~~~~~g--~---~~~~----~~~-~~~p~~gl~~d~~g~L~v  109 (355)
                      ..+|.+|+++++   ++.||++...        ++|.+++...+  +   .+.+    ... ...+. +|+++++|.||+
T Consensus        72 ~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~-~l~~~pDG~Lyv  150 (354)
T 3a9g_A           72 EAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGG-RIRFGPDGMLYI  150 (354)
T ss_dssp             TCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCC-CEEECTTSCEEE
T ss_pred             CCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCc-eEEECCCCcEEE
Confidence            367999999965   6899997653        68999998544  1   2222    111 13477 899999999999


Q ss_pred             EeCC--------------CcEEEEcCCC-e---------EEEcCCcCCcccEEEcc-CCcEEEEeCCCCCCCcccccccc
Q 018474          110 CDNE--------------KGLLKVTEEG-V---------EAIVPDASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMA  164 (355)
Q Consensus       110 ~~~~--------------~gl~~~~~~g-~---------~~~~~~~~~~~~l~~d~-dG~ly~~d~~~~~~~~~~~~~~~  164 (355)
                      +...              +.|+|++++| +         +.++.....|+++++|+ +|+||+++......  +....+.
T Consensus       151 t~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~--dei~~i~  228 (354)
T 3a9g_A          151 TTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGH--DEVNIIL  228 (354)
T ss_dssp             ECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSC--CEEEEEC
T ss_pred             EECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCC--cEEEEec
Confidence            8632              2588988655 2         34444447899999999 78999999763210  0011111


Q ss_pred             ccCCCCeEEEE-e-CCCCeEEEe--e-ccccccccEEEe-------CCCCEEEEEeCCCCeEEEEEeCCC-CCcceeEec
Q 018474          165 EGKPYGQLRKY-D-PKLKETTVL--H-EGFYFANGIALS-------KNEDFVVVCESWKFRCRRYWLKGD-RAGILDAFI  231 (355)
Q Consensus       165 ~~~~~g~l~~~-d-p~~~~~~~~--~-~~~~~pngi~~~-------~dg~~l~v~~~~~~~i~~~~~~~~-~~~~~~~~~  231 (355)
                      .+...|.-++. + ...+....+  . .....|.|+++.       .+| .+|+++...++|+++++++. .....+.+.
T Consensus       229 ~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G-~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~  307 (354)
T 3a9g_A          229 KGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRG-WLLIACLRGSMLAAVNFGDNMEVRKISTFF  307 (354)
T ss_dssp             TTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTT-EEEEEETTTTEEEEEEECGGGCEEEEEEEC
T ss_pred             CCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCC-cEEEEEcCCCEEEEEEECCCCcccceeeec
Confidence            11100000000 0 000000000  0 123458889984       466 59999999999999999753 222233444


Q ss_pred             ccCCCCcCceEECCCCCEEEEee
Q 018474          232 ENLPGGPDNINLAPDGSFWIGLI  254 (355)
Q Consensus       232 ~~~~g~p~~i~~d~~G~lwv~~~  254 (355)
                      ....+.|.++++++||.|||++.
T Consensus       308 ~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          308 KNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             TTTSCCEEEEEECTTSCEEEEEC
T ss_pred             cCCCCCeeEEEECCCCcEEEEEe
Confidence            33345689999999999999986

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.37  E-value=5.1e-11  Score=104.86  Aligned_cols=187  Identities=14%  Similarity=0.069  Sum_probs=128.4

Q ss_pred             ceEecCCCCCCCceEEEeeCCCeEEEEec---CCEEEEEEcCCCeeEEeeccCC--CcccCeEECCCCCEEEEeCCCc-E
Q 018474           43 LTKLGEGCVNHPEDVSVVVSKGALYTATR---DGWVKYFILHNETLVNWKHIDS--QSLLGLTTTKDGGVILCDNEKG-L  116 (355)
Q Consensus        43 ~~~~~~~~~~~p~~i~~d~~~g~l~~~~~---~g~i~~~~~~~g~~~~~~~~~~--~p~~gl~~d~~g~L~v~~~~~g-l  116 (355)
                      ...++.+....|++++++ .++.||+++.   ++.|..+|+++++...-.....  .+. |++++ .++||++++..+ +
T Consensus        12 v~~~p~~~~~f~~Gl~~~-~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fge-Gi~~~-g~~lyv~t~~~~~v   88 (266)
T 2iwa_A           12 LNEFPHDPYAFTQGLVYA-ENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGE-GLTLL-NEKLYQVVWLKNIG   88 (266)
T ss_dssp             EEEEECCTTCCEEEEEEC-STTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEE-EEEEE-TTEEEEEETTCSEE
T ss_pred             EEEEECCCCCCcccEEEe-CCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceE-EEEEe-CCEEEEEEecCCEE
Confidence            456666655568999999 4579999874   4799999999998765443333  445 67776 468999998754 7


Q ss_pred             EEEcC-CC--eEEEcCCcCCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeec-----
Q 018474          117 LKVTE-EG--VEAIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE-----  187 (355)
Q Consensus       117 ~~~~~-~g--~~~~~~~~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~-----  187 (355)
                      +.+|. +.  +..+...  .+.+..+.+|| ++|+++.                  .+.++.+||++.+......     
T Consensus        89 ~viD~~t~~v~~~i~~g--~~~g~glt~Dg~~l~vs~g------------------s~~l~viD~~t~~v~~~I~Vg~~~  148 (266)
T 2iwa_A           89 FIYDRRTLSNIKNFTHQ--MKDGWGLATDGKILYGSDG------------------TSILYEIDPHTFKLIKKHNVKYNG  148 (266)
T ss_dssp             EEEETTTTEEEEEEECC--SSSCCEEEECSSSEEEECS------------------SSEEEEECTTTCCEEEEEECEETT
T ss_pred             EEEECCCCcEEEEEECC--CCCeEEEEECCCEEEEECC------------------CCeEEEEECCCCcEEEEEEECCCC
Confidence            78884 55  5555432  35556666676 7999863                  4589999999876543321     


Q ss_pred             -cccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCC-cceeEeccc--------CC--CCcCceEECCCC-CEEEEee
Q 018474          188 -GFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRA-GILDAFIEN--------LP--GGPDNINLAPDG-SFWIGLI  254 (355)
Q Consensus       188 -~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~-~~~~~~~~~--------~~--g~p~~i~~d~~G-~lwv~~~  254 (355)
                       ....+|++.+. || .+|++....+.|.++|++..+. +... +...        .+  ..|.|+++|++| ++||+..
T Consensus       149 ~p~~~~nele~~-dg-~lyvn~~~~~~V~vID~~tg~V~~~I~-~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk  225 (266)
T 2iwa_A          149 HRVIRLNELEYI-NG-EVWANIWQTDCIARISAKDGTLLGWIL-LPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGK  225 (266)
T ss_dssp             EECCCEEEEEEE-TT-EEEEEETTSSEEEEEETTTCCEEEEEE-CHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEET
T ss_pred             cccccceeEEEE-CC-EEEEecCCCCeEEEEECCCCcEEEEEE-CCCcccccccccccccCceEEEEEcCCCCEEEEECC
Confidence             12368899988 77 5999988889999999865432 1211 1100        01  246899999988 5888774


Q ss_pred             c
Q 018474          255 K  255 (355)
Q Consensus       255 ~  255 (355)
                      .
T Consensus       226 ~  226 (266)
T 2iwa_A          226 L  226 (266)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.36  E-value=4.9e-10  Score=99.71  Aligned_cols=220  Identities=12%  Similarity=0.109  Sum_probs=146.8

Q ss_pred             CCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeE-Eeecc-CCCcccCeEECCCCCEEEEeCC-C-cEEEEcCCC--eE
Q 018474           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLV-NWKHI-DSQSLLGLTTTKDGGVILCDNE-K-GLLKVTEEG--VE  125 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~-~~~~~-~~~p~~gl~~d~~g~L~v~~~~-~-gl~~~~~~g--~~  125 (355)
                      ..+.++++. .+|.+++ +.+++|+.+|+ +|+.. ++... ...+. +....++|++++++.. . .++.++++|  +.
T Consensus        37 ~~~~~~~~~-pdG~ilv-s~~~~V~~~d~-~G~~~W~~~~~~~~~~~-~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~  112 (276)
T 3no2_A           37 WECNSVAAT-KAGEILF-SYSKGAKMITR-DGRELWNIAAPAGCEMQ-TARILPDGNALVAWCGHPSTILEVNMKGEVLS  112 (276)
T ss_dssp             CCCCEEEEC-TTSCEEE-ECBSEEEEECT-TSCEEEEEECCTTCEEE-EEEECTTSCEEEEEESTTEEEEEECTTSCEEE
T ss_pred             CCCcCeEEC-CCCCEEE-eCCCCEEEECC-CCCEEEEEcCCCCcccc-ccEECCCCCEEEEecCCCCEEEEEeCCCCEEE
Confidence            468999999 5667777 55788999999 77643 22221 12455 6778899999998765 3 477788777  44


Q ss_pred             EEcC--C----cCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeC
Q 018474          126 AIVP--D----ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSK  199 (355)
Q Consensus       126 ~~~~--~----~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~  199 (355)
                      .+..  .    ...++.+.++++|++++++..                 .+.++.||++ |+...-......|.+++..+
T Consensus       113 ~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~-----------------~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~  174 (276)
T 3no2_A          113 KTEFETGIERPHAQFRQINKNKKGNYLVPLFA-----------------TSEVREIAPN-GQLLNSVKLSGTPFSSAFLD  174 (276)
T ss_dssp             EEEECCSCSSGGGSCSCCEECTTSCEEEEETT-----------------TTEEEEECTT-SCEEEEEECSSCCCEEEECT
T ss_pred             EEeccCCCCcccccccCceECCCCCEEEEecC-----------------CCEEEEECCC-CCEEEEEECCCCccceeEcC
Confidence            3321  1    145677889999999998765                 5689999998 66544333335688889999


Q ss_pred             CCCEEEEEeCCCCeEEEEEeC-CCCCcceeEecccCC----CCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHH
Q 018474          200 NEDFVVVCESWKFRCRRYWLK-GDRAGILDAFIENLP----GGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELL  274 (355)
Q Consensus       200 dg~~l~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~----g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~  274 (355)
                      +|+ +++++...++|..++.+ |....++.  ....+    ..|.++..+++|+++|+..++...--             
T Consensus       175 ~g~-~~v~~~~~~~v~~~d~~tG~~~w~~~--~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~-------------  238 (276)
T 3no2_A          175 NGD-CLVACGDAHCFVQLNLESNRIVRRVN--ANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREA-------------  238 (276)
T ss_dssp             TSC-EEEECBTTSEEEEECTTTCCEEEEEE--GGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTG-------------
T ss_pred             CCC-EEEEeCCCCeEEEEeCcCCcEEEEec--CCCCCCccccccccceEcCCCCEEEEeccCccccc-------------
Confidence            998 67777777899999986 43222221  11112    23678889999999999975321000             


Q ss_pred             HhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEE
Q 018474          275 DAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAE  325 (355)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~  325 (355)
                                   .......++++++ +|+++=.|.....  +..+++++.
T Consensus       239 -------------~~~~~~~~~~~~~-~g~~~W~~~~~~~--~~~~~~~~~  273 (276)
T 3no2_A          239 -------------GKGKHPQLVEIDS-EGKVVWQLNDKVK--FGMISTICP  273 (276)
T ss_dssp             -------------GGSCCCSEEEECT-TSBEEEEECCTTT--SCCCCEEEE
T ss_pred             -------------cccCCceEEEECC-CCCEEEEecCccc--ccceeeeee
Confidence                         0001246999999 9999888866443  556666553

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.35  E-value=2e-09  Score=99.68  Aligned_cols=219  Identities=13%  Similarity=0.177  Sum_probs=150.2

Q ss_pred             eEEE-EecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCC-CcEEEEc-CCC--eEEEcCCcCCcccEE
Q 018474           65 ALYT-ATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNE-KGLLKVT-EEG--VEAIVPDASFTNDVI  138 (355)
Q Consensus        65 ~l~~-~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~-~gl~~~~-~~g--~~~~~~~~~~~~~l~  138 (355)
                      .+|+ +..++.|..+|..+++..........+. +++++++|+ ||++... +.+..++ .++  ...+... ..+++++
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~-~~v~~~~   80 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVGSNPM-GAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG-SSPQGVA   80 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSSSEE-EEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS-SSEEEEE
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecCCCcc-eEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECC-CCccceE
Confidence            4555 4568999999998887765544455688 999999997 5666544 4466667 466  3444333 4789999


Q ss_pred             EccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEE
Q 018474          139 AASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRY  217 (355)
Q Consensus       139 ~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~  217 (355)
                      ++++|+ ||++...                 .+.++.||.++++..........+.++++++|++.+|++....+.|..+
T Consensus        81 ~spdg~~l~~~~~~-----------------~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~  143 (391)
T 1l0q_A           81 VSPDGKQVYVTNMA-----------------SSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVI  143 (391)
T ss_dssp             ECTTSSEEEEEETT-----------------TTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             ECCCCCEEEEEECC-----------------CCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEE
Confidence            999985 7777543                 4679999999887765555555678999999999999998888999999


Q ss_pred             EeCCCCCcceeEecccCCCCcCceEECCCCC-EEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEE
Q 018474          218 WLKGDRAGILDAFIENLPGGPDNINLAPDGS-FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVV  296 (355)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  296 (355)
                      +++..+.  ...+.  ....+..+.++++|+ +|++....                                    +.|.
T Consensus       144 d~~~~~~--~~~~~--~~~~~~~~~~~~dg~~l~~~~~~~------------------------------------~~v~  183 (391)
T 1l0q_A          144 NTVTKAV--INTVS--VGRSPKGIAVTPDGTKVYVANFDS------------------------------------MSIS  183 (391)
T ss_dssp             ETTTTEE--EEEEE--CCSSEEEEEECTTSSEEEEEETTT------------------------------------TEEE
T ss_pred             ECCCCcE--EEEEe--cCCCcceEEECCCCCEEEEEeCCC------------------------------------CEEE
Confidence            9854321  11221  223467788999996 55665331                                    3578


Q ss_pred             EEeCCCCeEEEEEECCCCCcccceeEEEEe--CCEEEEeec--CCCeEEEeeCCC
Q 018474          297 KVDGNDGKIIRDFNDPDATYISFVTSAAEF--DGNLYLASL--QSNFIGILPLDG  347 (355)
Q Consensus       297 ~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~--~g~L~v~~~--~~~~i~~~~~~~  347 (355)
                      .+|..+++....+....     .+..+...  +..||+++.  ..+.|..+++.+
T Consensus       184 ~~d~~~~~~~~~~~~~~-----~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~  233 (391)
T 1l0q_A          184 VIDTVTNSVIDTVKVEA-----APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT  233 (391)
T ss_dssp             EEETTTTEEEEEEECSS-----EEEEEEECTTSSEEEEEEECSSCCEEEEEETTT
T ss_pred             EEECCCCeEEEEEecCC-----CccceEECCCCCEEEEEecCcCCCcEEEEECCC
Confidence            88875666666664322     23444443  357888775  577888887764

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.35  E-value=1.4e-09  Score=106.05  Aligned_cols=232  Identities=10%  Similarity=-0.024  Sum_probs=156.0

Q ss_pred             EEeeCCCeEEEEec-CCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCCCcEEEEcC---CC--eEEEcCC
Q 018474           58 SVVVSKGALYTATR-DGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEKGLLKVTE---EG--VEAIVPD  130 (355)
Q Consensus        58 ~~d~~~g~l~~~~~-~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~~gl~~~~~---~g--~~~~~~~  130 (355)
                      +++ .++.+|++.. ++.|..+|..+++.......+..++ +++++++|+ ||+++..+.+..++.   ++  +..+...
T Consensus       144 ~~~-p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~-~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g  221 (543)
T 1nir_A          144 DLD-LPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVH-ISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG  221 (543)
T ss_dssp             CCC-GGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTTEE-EEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC
T ss_pred             ccC-CCCEEEEEEcCCCeEEEEECCCceEEEEEecCcccc-eEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecC
Confidence            367 4667887654 7899999998887655444444588 999999986 788886655777774   34  3344332


Q ss_pred             cCCcccEEEcc----CC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecc------------ccccc
Q 018474          131 ASFTNDVIAAS----DG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG------------FYFAN  193 (355)
Q Consensus       131 ~~~~~~l~~d~----dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~------------~~~pn  193 (355)
                       ..|.++++++    || .+|+++..                 .+.+..||..+++.......            ...+.
T Consensus       222 -~~p~~va~sp~~~~dg~~l~v~~~~-----------------~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~  283 (543)
T 1nir_A          222 -IEARSVESSKFKGYEDRYTIAGAYW-----------------PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVA  283 (543)
T ss_dssp             -SEEEEEEECCSTTCTTTEEEEEEEE-----------------SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEE
T ss_pred             -CCcceEEeCCCcCCCCCEEEEEEcc-----------------CCeEEEEeccccccceeecccCcccCccccccCCceE
Confidence             6799999999    98 57777532                 34677888877765433221            11356


Q ss_pred             cEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCE-EEEeecCCchhhHhhhcchhHHH
Q 018474          194 GIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSF-WIGLIKMNQTGVRAIQKCREKWE  272 (355)
Q Consensus       194 gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~l-wv~~~~~~~~~~~~~~~~~~~~~  272 (355)
                      +++++++++.+|++....+.|+.++.+..+.-....+  .....|.++.+|++|++ +++....                
T Consensus       284 ~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i--~~~~~~~~~~~spdg~~l~va~~~~----------------  345 (543)
T 1nir_A          284 AIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI--GAAPFLHDGGWDSSHRYFMTAANNS----------------  345 (543)
T ss_dssp             EEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE--ECCSSCCCEEECTTSCEEEEEEGGG----------------
T ss_pred             EEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe--ccCcCccCceECCCCCEEEEEecCC----------------
Confidence            7999999999999998899999999865332121122  22346889999999985 5554331                


Q ss_pred             HHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEE-eCCEEEEee-cCCCeEEEeeCCC
Q 018474          273 LLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAE-FDGNLYLAS-LQSNFIGILPLDG  347 (355)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~-~~~~~i~~~~~~~  347 (355)
                                          +.|..+|.++|+....+.............+.. +++.+|+++ ...+.|.++++++
T Consensus       346 --------------------~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~  402 (543)
T 1nir_A          346 --------------------NKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDP  402 (543)
T ss_dssp             --------------------TEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             --------------------CeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCC
Confidence                                357779987888888776422111111222222 248899986 4678999999876

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.34  E-value=1.8e-09  Score=101.35  Aligned_cols=251  Identities=15%  Similarity=0.119  Sum_probs=162.3

Q ss_pred             CCceEEEeeCCCeEEE-EecCCEEEEEEcCCCeeEE-eeccCCCcccCeEECCCCC-EEEEeCC-CcEEEEc-CCC--eE
Q 018474           53 HPEDVSVVVSKGALYT-ATRDGWVKYFILHNETLVN-WKHIDSQSLLGLTTTKDGG-VILCDNE-KGLLKVT-EEG--VE  125 (355)
Q Consensus        53 ~p~~i~~d~~~g~l~~-~~~~g~i~~~~~~~g~~~~-~~~~~~~p~~gl~~d~~g~-L~v~~~~-~gl~~~~-~~g--~~  125 (355)
                      ...++++. .++.+|+ +..++.|..+|.++++... +......+. +++++++|+ +|++... +.+..++ .++  +.
T Consensus       171 ~v~~~~~~-~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~  248 (433)
T 3bws_A          171 FVETISIP-EHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSK-ILLYDPIRDLVYCSNWISEDISVIDRKTKLEIR  248 (433)
T ss_dssp             EEEEEEEG-GGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEE-EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             ceeEEEEc-CCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCee-EEEEcCCCCEEEEEecCCCcEEEEECCCCcEEE
Confidence            44568887 4556655 5567999999998776543 333345677 899998886 5566644 4477777 466  33


Q ss_pred             EEcCCcCCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEE
Q 018474          126 AIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFV  204 (355)
Q Consensus       126 ~~~~~~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l  204 (355)
                      .+.. ...+.+++++++| .+|++......        +  ....+.++.||+.+++..........+.+++++|+++.+
T Consensus       249 ~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~--------~--~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l  317 (433)
T 3bws_A          249 KTDK-IGLPRGLLLSKDGKELYIAQFSASN--------Q--ESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKI  317 (433)
T ss_dssp             ECCC-CSEEEEEEECTTSSEEEEEEEESCT--------T--CSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEE
T ss_pred             EecC-CCCceEEEEcCCCCEEEEEECCCCc--------c--ccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEE
Confidence            3332 2568899999999 56666432100        0  012568999999888765444333467889999999999


Q ss_pred             EEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCC-EEEEeecCCchhhHhhhcchhHHHHHHhccchhhc
Q 018474          205 VVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGS-FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISL  283 (355)
Q Consensus       205 ~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (355)
                      |++....+.|..|++++.+.  ...+  .....+..++++++|+ +|++..........+                    
T Consensus       318 ~~~~~~~~~v~v~d~~~~~~--~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~--------------------  373 (433)
T 3bws_A          318 YVSDMCCSKIEVYDLKEKKV--QKSI--PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGY--------------------  373 (433)
T ss_dssp             EEEETTTTEEEEEETTTTEE--EEEE--ECSSSEEEEEECTTSSEEEEEECCCCCTTTCT--------------------
T ss_pred             EEEecCCCEEEEEECCCCcE--EEEe--cCCCCCCeEEEcCCCCEEEEEecCCCcccccc--------------------
Confidence            99988889999999864321  1222  1233477899999997 666664421100000                    


Q ss_pred             ccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEe--CCEEEEeecCCCeEEEeeCCC
Q 018474          284 LLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF--DGNLYLASLQSNFIGILPLDG  347 (355)
Q Consensus       284 ~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~--~g~L~v~~~~~~~i~~~~~~~  347 (355)
                        -+.+...+.|..+|.++++....+....     .+..+...  +..|++++...+.|..+++++
T Consensus       374 --~~~g~~dg~v~~~d~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          374 --LKKGLVLGKVYVIDTTTDTVKEFWEAGN-----QPTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             --TSCCSSCCEEEEEETTTTEEEEEEECSS-----SEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             --ccccccceEEEEEECCCCcEEEEecCCC-----CCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence              0012334679999986888887776522     34555553  457888887788999888764

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.33  E-value=4.5e-10  Score=105.52  Aligned_cols=232  Identities=11%  Similarity=0.089  Sum_probs=157.3

Q ss_pred             CCCceEEEeeCCCeEEEEec-CCEEEEEEcCCCeeEEeecc------CCCcccCeEECCCCCEEEEeCCC-cEEEEc-CC
Q 018474           52 NHPEDVSVVVSKGALYTATR-DGWVKYFILHNETLVNWKHI------DSQSLLGLTTTKDGGVILCDNEK-GLLKVT-EE  122 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~-~g~i~~~~~~~g~~~~~~~~------~~~p~~gl~~d~~g~L~v~~~~~-gl~~~~-~~  122 (355)
                      ..|.++++++ ++.++++.. ++.|..+|..+++.......      ...+. +++++++|++|++.... .+..++ .+
T Consensus       123 ~~~~~~~~s~-~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~s~~~d~~v~~~d~~~  200 (433)
T 3bws_A          123 FQPKSVRFID-NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVE-TISIPEHNELWVSQMQANAVHVFDLKT  200 (433)
T ss_dssp             SCBCCCEESS-SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEE-EEEEGGGTEEEEEEGGGTEEEEEETTT
T ss_pred             CCceEEEEeC-CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCcee-EEEEcCCCEEEEEECCCCEEEEEECCC
Confidence            4577999995 777777654 67799999988876653221      12456 78898899999887664 466667 45


Q ss_pred             C--eEEEcCCcCCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeC
Q 018474          123 G--VEAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSK  199 (355)
Q Consensus       123 g--~~~~~~~~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~  199 (355)
                      +  ...+......+.+++++++|. +|++...                 .+.+..||.++++..........+.+++++|
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~  263 (433)
T 3bws_A          201 LAYKATVDLTGKWSKILLYDPIRDLVYCSNWI-----------------SEDISVIDRKTKLEIRKTDKIGLPRGLLLSK  263 (433)
T ss_dssp             CCEEEEEECSSSSEEEEEEETTTTEEEEEETT-----------------TTEEEEEETTTTEEEEECCCCSEEEEEEECT
T ss_pred             ceEEEEEcCCCCCeeEEEEcCCCCEEEEEecC-----------------CCcEEEEECCCCcEEEEecCCCCceEEEEcC
Confidence            5  444544346789999999985 6666543                 4679999998887655444445688999999


Q ss_pred             CCCEEEEEeC-------CCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCC-EEEEeecCCchhhHhhhcchhHH
Q 018474          200 NEDFVVVCES-------WKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGS-FWIGLIKMNQTGVRAIQKCREKW  271 (355)
Q Consensus       200 dg~~l~v~~~-------~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~  271 (355)
                      |++.++++..       ..+.|..|+++..+.  ...+  ..++.+..+.++++|+ +|++....               
T Consensus       264 ~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~--~~~~--~~~~~~~~~~~~~~g~~l~~~~~~~---------------  324 (433)
T 3bws_A          264 DGKELYIAQFSASNQESGGGRLGIYSMDKEKL--IDTI--GPPGNKRHIVSGNTENKIYVSDMCC---------------  324 (433)
T ss_dssp             TSSEEEEEEEESCTTCSCCEEEEEEETTTTEE--EEEE--EEEECEEEEEECSSTTEEEEEETTT---------------
T ss_pred             CCCEEEEEECCCCccccCCCeEEEEECCCCcE--Eeec--cCCCCcceEEECCCCCEEEEEecCC---------------
Confidence            9998888874       345788999854321  1111  1223467789999996 67765431               


Q ss_pred             HHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEe--CCEEEEeecCCC-----------
Q 018474          272 ELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF--DGNLYLASLQSN-----------  338 (355)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~--~g~L~v~~~~~~-----------  338 (355)
                                           +.|..+|.++++....+....     .+..+...  +..||+++...+           
T Consensus       325 ---------------------~~v~v~d~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~  378 (433)
T 3bws_A          325 ---------------------SKIEVYDLKEKKVQKSIPVFD-----KPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGL  378 (433)
T ss_dssp             ---------------------TEEEEEETTTTEEEEEEECSS-----SEEEEEECTTSSEEEEEECCCCCTTTCTTSCCS
T ss_pred             ---------------------CEEEEEECCCCcEEEEecCCC-----CCCeEEEcCCCCEEEEEecCCCccccccccccc
Confidence                                 468888885677776665322     24445544  356888876543           


Q ss_pred             ---eEEEeeCCC
Q 018474          339 ---FIGILPLDG  347 (355)
Q Consensus       339 ---~i~~~~~~~  347 (355)
                         .|.++++.+
T Consensus       379 ~dg~v~~~d~~~  390 (433)
T 3bws_A          379 VLGKVYVIDTTT  390 (433)
T ss_dssp             SCCEEEEEETTT
T ss_pred             cceEEEEEECCC
Confidence               788887754

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.31  E-value=8.5e-10  Score=107.69  Aligned_cols=238  Identities=13%  Similarity=0.117  Sum_probs=156.8

Q ss_pred             CCceEEEeeCCCeEEEEecCCEEEEEEc--CCCeeEEeeccCCCcccCeEECC----CCC-EEEEeCC-CcEEEEc-CCC
Q 018474           53 HPEDVSVVVSKGALYTATRDGWVKYFIL--HNETLVNWKHIDSQSLLGLTTTK----DGG-VILCDNE-KGLLKVT-EEG  123 (355)
Q Consensus        53 ~p~~i~~d~~~g~l~~~~~~g~i~~~~~--~~g~~~~~~~~~~~p~~gl~~d~----~g~-L~v~~~~-~gl~~~~-~~g  123 (355)
                      .|.+++++++++.+|+++.++.|..+|.  .+++...-...+..|. ++++++    +|+ ||++... +.+..+| .++
T Consensus       180 ~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~-~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~  258 (543)
T 1nir_A          180 AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEAR-SVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL  258 (543)
T ss_dssp             TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEE-EEEECCSTTCTTTEEEEEEEESSEEEEEETTTC
T ss_pred             ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcc-eEEeCCCcCCCCCEEEEEEccCCeEEEEecccc
Confidence            4889999988889999999999999999  7776554444566788 999998    886 7887743 4566667 455


Q ss_pred             --eEEEcCC-----------cCCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeE---EEee
Q 018474          124 --VEAIVPD-----------ASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKET---TVLH  186 (355)
Q Consensus       124 --~~~~~~~-----------~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~---~~~~  186 (355)
                        ++.+...           ...+.++++++++ .+|++...                 .+.+..+|..+.+.   ..+ 
T Consensus       259 ~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~-----------------~g~i~vvd~~~~~~l~~~~i-  320 (543)
T 1nir_A          259 EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE-----------------TGKVLLVNYKDIDNLTVTSI-  320 (543)
T ss_dssp             CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT-----------------TTEEEEEECTTSSSCEEEEE-
T ss_pred             ccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC-----------------CCeEEEEEecCCCcceeEEe-
Confidence              5544321           1256788999877 56666433                 56788888765432   122 


Q ss_pred             ccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEec-ccCCCCc-CceE-ECCC-CCEEEEeecCCchhhH
Q 018474          187 EGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFI-ENLPGGP-DNIN-LAPD-GSFWIGLIKMNQTGVR  262 (355)
Q Consensus       187 ~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~g~p-~~i~-~d~~-G~lwv~~~~~~~~~~~  262 (355)
                      .....|.+++++|||+++|++....+.|..++.+..+.  ...+. ...| .| .+.. .+++ |.+|++...+      
T Consensus       321 ~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l--~~~i~~g~~p-h~g~g~~~~~p~~g~~~~s~~~~------  391 (543)
T 1nir_A          321 GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRL--SALVDVGKTP-HPGRGANFVHPKYGPVWSTSHLG------  391 (543)
T ss_dssp             ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEE--EEEEECSSSB-CCTTCEEEEETTTEEEEEEEBSS------
T ss_pred             ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeE--EEeeccCCCC-CCCCCcccCCCCCccEEEeccCC------
Confidence            23457899999999999999988888999999754322  11111 1111 12 2333 3555 7888876421      


Q ss_pred             hhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCC-------CeEEEEEECCCCCcccceeEEE--EeCCEEEEe
Q 018474          263 AIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGND-------GKIIRDFNDPDATYISFVTSAA--EFDGNLYLA  333 (355)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------g~~~~~~~~~~g~~~~~~~~~~--~~~g~L~v~  333 (355)
                                                   .+.|..++.+.       .+.+..+..+.+.    ...+.  .++.+||++
T Consensus       392 -----------------------------d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~----~~~v~~~pdg~~l~v~  438 (543)
T 1nir_A          392 -----------------------------DGSISLIGTDPKNHPQYAWKKVAELQGQGGG----SLFIKTHPKSSHLYVD  438 (543)
T ss_dssp             -----------------------------SSEEEEEECCTTTCTTTBTSEEEEEECSCSC----CCCEECCTTCCEEEEC
T ss_pred             -----------------------------CceEEEEEeCCCCCchhcCeEEEEEEcCCCC----ceEEEcCCCCCcEEEe
Confidence                                         12465565533       6888888765432    12233  345889998


Q ss_pred             ecC------CCeEEEeeCCCCCCC
Q 018474          334 SLQ------SNFIGILPLDGPEPQ  351 (355)
Q Consensus       334 ~~~------~~~i~~~~~~~~~~~  351 (355)
                      +..      ++.|.++++.+....
T Consensus       439 ~~~~~~~~~~~~v~v~d~~~~~~~  462 (543)
T 1nir_A          439 TTFNPDARISQSVAVFDLKNLDAK  462 (543)
T ss_dssp             CTTCSSHHHHTCEEEEETTCTTSC
T ss_pred             cCCCCCcccCceEEEEECCCCCCC
Confidence            732      459999998866543

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=99.31  E-value=1e-09  Score=95.97  Aligned_cols=188  Identities=10%  Similarity=0.106  Sum_probs=127.3

Q ss_pred             CCCCCCceEEEeeCCCeEEE-EecCCEEEEEEcCCCeeEEeecc--CCCcccCeEECCCCCEEEEeCC-CcEEEEc--CC
Q 018474           49 GCVNHPEDVSVVVSKGALYT-ATRDGWVKYFILHNETLVNWKHI--DSQSLLGLTTTKDGGVILCDNE-KGLLKVT--EE  122 (355)
Q Consensus        49 ~~~~~p~~i~~d~~~g~l~~-~~~~g~i~~~~~~~g~~~~~~~~--~~~p~~gl~~d~~g~L~v~~~~-~gl~~~~--~~  122 (355)
                      |....+.+|+++++++.||+ ...++.|+++|.. |+...-...  ...+. ||+.+.+|++||++-. ++++.+.  .+
T Consensus        24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~E-GIa~~~~g~~~vs~E~~~~l~~~~v~~~  101 (255)
T 3qqz_A           24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLE-TIEYIGDNQFVISDERDYAIYVISLTPN  101 (255)
T ss_dssp             TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEE-EEEECSTTEEEEEETTTTEEEEEEECTT
T ss_pred             CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChH-HeEEeCCCEEEEEECCCCcEEEEEcCCC
Confidence            44567999999987889997 5668899999995 765443322  24688 9999999999888633 4677665  33


Q ss_pred             C-eE---EEcCCc------CCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEe--CCCCeEEEeec--
Q 018474          123 G-VE---AIVPDA------SFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYD--PKLKETTVLHE--  187 (355)
Q Consensus       123 g-~~---~~~~~~------~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~d--p~~~~~~~~~~--  187 (355)
                      + +.   ......      ....+|++|+++ +||++....                ...+|.++  +.+..++....  
T Consensus       102 ~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~----------------p~~i~~~~g~~~~~~l~i~~~~~  165 (255)
T 3qqz_A          102 SEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKN----------------PIEVYKVNGLLSSNELHISKDKA  165 (255)
T ss_dssp             CCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESS----------------SEEEEEEESTTCSSCCEEEECHH
T ss_pred             CeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcC----------------CceEEEEcccccCCceeeecchh
Confidence            3 22   221111      345789999987 899976431                22677777  22223333311  


Q ss_pred             -----cccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCC------CCcCceEECCCCCEEEEeec
Q 018474          188 -----GFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLP------GGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       188 -----~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~------g~p~~i~~d~~G~lwv~~~~  255 (355)
                           ....+.+++++|....+|+.....+.|..++.+|.-. ....+.....      ..|.|+++|++|++||++..
T Consensus       166 ~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~-~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~  243 (255)
T 3qqz_A          166 LQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVI-GEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEP  243 (255)
T ss_dssp             HHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEE-EEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETT
T ss_pred             hccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEE-EEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCC
Confidence                 1345789999999999999998889999999876422 2222221111      25889999999999999754

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.30  E-value=1.3e-09  Score=100.04  Aligned_cols=181  Identities=15%  Similarity=0.141  Sum_probs=116.8

Q ss_pred             CCCceEEEeeCCCeEEEEec-CCEEEEEEcCC-CeeEEe----ecc----------CCCcccCeEECCCCC-EEEEeCCC
Q 018474           52 NHPEDVSVVVSKGALYTATR-DGWVKYFILHN-ETLVNW----KHI----------DSQSLLGLTTTKDGG-VILCDNEK  114 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~-~g~i~~~~~~~-g~~~~~----~~~----------~~~p~~gl~~d~~g~-L~v~~~~~  114 (355)
                      ..|.++++  +++.+|++.. ++.+..++..+ +.....    ...          ...++ +++++++|+ ||+++...
T Consensus       100 ~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~spdg~~l~~~~~~~  176 (361)
T 3scy_A          100 ADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLH-CVRITPDGKYLLADDLGT  176 (361)
T ss_dssp             SCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEE-EEEECTTSSEEEEEETTT
T ss_pred             CCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcce-EEEECCCCCEEEEEeCCC
Confidence            57888888  4778898875 67888888753 332211    111          12346 799999997 88888654


Q ss_pred             c-EEEE--cC-CC------e------EEEc-CCcCCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEe
Q 018474          115 G-LLKV--TE-EG------V------EAIV-PDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYD  176 (355)
Q Consensus       115 g-l~~~--~~-~g------~------~~~~-~~~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~d  176 (355)
                      + +..+  +. .+      +      .... .....|+++++++||+ +|+++..                 .+.+..|+
T Consensus       177 ~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~-----------------~~~v~v~~  239 (361)
T 3scy_A          177 DQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEI-----------------GGTVIAFR  239 (361)
T ss_dssp             TEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT-----------------TCEEEEEE
T ss_pred             CEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCC-----------------CCeEEEEE
Confidence            3 4444  32 21      1      1111 1226789999999995 8887643                 34677777


Q ss_pred             CCCCeEEEeec------cccccccEEEeCCCCEEEEEeCC-CCeEEEEEeCC--CCCcceeEecccCCCCcCceEECCCC
Q 018474          177 PKLKETTVLHE------GFYFANGIALSKNEDFVVVCESW-KFRCRRYWLKG--DRAGILDAFIENLPGGPDNINLAPDG  247 (355)
Q Consensus       177 p~~~~~~~~~~------~~~~pngi~~~~dg~~l~v~~~~-~~~i~~~~~~~--~~~~~~~~~~~~~~g~p~~i~~d~~G  247 (355)
                      .++++++.+..      ....|.+++++|||+++|+++.. .+.|..|+++.  ........+. . ...|.+++++++|
T Consensus       240 ~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~-~-g~~~~~~~~spdg  317 (361)
T 3scy_A          240 YADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQL-T-GIHPRNFIITPNG  317 (361)
T ss_dssp             EETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEE-C-SSCCCEEEECTTS
T ss_pred             ecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEec-C-CCCCceEEECCCC
Confidence            66776654432      12346699999999999999987 78899998852  2221222221 2 3468999999999


Q ss_pred             C-EEEEee
Q 018474          248 S-FWIGLI  254 (355)
Q Consensus       248 ~-lwv~~~  254 (355)
                      + +|++..
T Consensus       318 ~~l~~~~~  325 (361)
T 3scy_A          318 KYLLVACR  325 (361)
T ss_dssp             CEEEEEET
T ss_pred             CEEEEEEC
Confidence            8 666653

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.28  E-value=1.6e-09  Score=97.62  Aligned_cols=213  Identities=15%  Similarity=0.104  Sum_probs=137.0

Q ss_pred             CCceEEEeeCCCeEEEEe------------cCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCCCcEEEE
Q 018474           53 HPEDVSVVVSKGALYTAT------------RDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEKGLLKV  119 (355)
Q Consensus        53 ~p~~i~~d~~~g~l~~~~------------~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~~gl~~~  119 (355)
                      .|.+++++++++.+|++.            .++.|..+|..+++.......+..+. +++++++|+ ||++  .+.++.+
T Consensus        83 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~--~~~i~~~  159 (337)
T 1pby_B           83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQIT-MLAWARDGSKLYGL--GRDLHVM  159 (337)
T ss_dssp             CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCC-CEEECTTSSCEEEE--SSSEEEE
T ss_pred             cccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcc-eeEECCCCCEEEEe--CCeEEEE
Confidence            789999997677899886            46899999998887665444456788 999999987 7777  3468888


Q ss_pred             cC-CC--eEEEcCCcCCcccEEEccCC-cEEEEeCCCCCCCcccccccccc------CCCCeEEEEeCCCCeEEEee--c
Q 018474          120 TE-EG--VEAIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEG------KPYGQLRKYDPKLKETTVLH--E  187 (355)
Q Consensus       120 ~~-~g--~~~~~~~~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~------~~~g~l~~~dp~~~~~~~~~--~  187 (355)
                      +. ++  ...+... ..+..+.++++| .+|++......-...+......+      .....++.+|+++++.....  .
T Consensus       160 d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~  238 (337)
T 1pby_B          160 DPEAGTLVEDKPIQ-SWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI  238 (337)
T ss_dssp             ETTTTEEEEEECST-TTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEE
T ss_pred             ECCCCcEeeeeecc-ccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCC
Confidence            84 56  3333322 223344677877 46665432100000000000000      00126889999888765221  2


Q ss_pred             cccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCC-EEEEeecCCchhhHhhhc
Q 018474          188 GFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGS-FWIGLIKMNQTGVRAIQK  266 (355)
Q Consensus       188 ~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~  266 (355)
                      ....+.+++++||++.+|++   .+.|.+|+++..+.  ...+  ..+..|.++.++++|+ +|++...           
T Consensus       239 ~~~~~~~~~~s~dg~~l~~~---~~~v~~~d~~~~~~--~~~~--~~~~~~~~~~~s~dg~~l~~~~~~-----------  300 (337)
T 1pby_B          239 MDVFYFSTAVNPAKTRAFGA---YNVLESFDLEKNAS--IKRV--PLPHSYYSVNVSTDGSTVWLGGAL-----------  300 (337)
T ss_dssp             CSSCEEEEEECTTSSEEEEE---ESEEEEEETTTTEE--EEEE--ECSSCCCEEEECTTSCEEEEESBS-----------
T ss_pred             CCCceeeEEECCCCCEEEEe---CCeEEEEECCCCcC--ccee--cCCCceeeEEECCCCCEEEEEcCC-----------
Confidence            23457789999999999988   37899999854321  1112  1234578899999997 6665322           


Q ss_pred             chhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCC
Q 018474          267 CREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPD  313 (355)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~  313 (355)
                                                +.|..+|.++++.+..+..+.
T Consensus       301 --------------------------~~i~v~d~~~~~~~~~~~~~~  321 (337)
T 1pby_B          301 --------------------------GDLAAYDAETLEKKGQVDLPG  321 (337)
T ss_dssp             --------------------------SEEEEEETTTCCEEEEEECGG
T ss_pred             --------------------------CcEEEEECcCCcEEEEEEcCC
Confidence                                      468889986788888886654

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.27  E-value=4.8e-09  Score=96.77  Aligned_cols=184  Identities=9%  Similarity=0.051  Sum_probs=107.8

Q ss_pred             eEEEEecC--CEEEE--EEcCCCeeEEeec----cCCCcccCeEECCCCC-EEEEeCCCcEEEEc-C-CC-eEEEcCC--
Q 018474           65 ALYTATRD--GWVKY--FILHNETLVNWKH----IDSQSLLGLTTTKDGG-VILCDNEKGLLKVT-E-EG-VEAIVPD--  130 (355)
Q Consensus        65 ~l~~~~~~--g~i~~--~~~~~g~~~~~~~----~~~~p~~gl~~d~~g~-L~v~~~~~gl~~~~-~-~g-~~~~~~~--  130 (355)
                      .+|+++..  ++|+.  +|+.+|+++.+..    ....|. .++++++|+ ||+++.. .+..++ . +| +..+...  
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~-~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~   81 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPIS-WMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPI   81 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCS-EEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEEC
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCc-EEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeec
Confidence            58888874  46764  5677888765533    123688 899999997 7877765 666666 3 66 4332211  


Q ss_pred             cCCcccEEEccCCc-EEEEeCC-CCCCCccccccccccCCCCeEEEEeCC-CCeEEE-ee----ccccccccEEEeCCCC
Q 018474          131 ASFTNDVIAASDGT-LYFTVAS-TKYTPTDFYKDMAEGKPYGQLRKYDPK-LKETTV-LH----EGFYFANGIALSKNED  202 (355)
Q Consensus       131 ~~~~~~l~~d~dG~-ly~~d~~-~~~~~~~~~~~~~~~~~~g~l~~~dp~-~~~~~~-~~----~~~~~pngi~~~~dg~  202 (355)
                      ...|.++++++||+ +|+.... ..+.  .+....+.  ..+.+..|+.+ +++... +.    .....+.+++++|||+
T Consensus        82 ~g~~~~~~~spdg~~l~~~~~~~~~~~--~~~~~~~~--~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~  157 (365)
T 1jof_A           82 GGHPRANDADTNTRAIFLLAAKQPPYA--VYANPFYK--FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTET  157 (365)
T ss_dssp             CSSGGGGCTTSCCEEEEEEECSSTTCC--EEEEEESS--SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSS
T ss_pred             CCCCccEEECCCCCEEEEEEecCCcce--eccceeec--CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCC
Confidence            13488899999997 3432211 0000  00000000  13344444432 344332 21    1345688999999999


Q ss_pred             EEEEEeCCCCeEEEEEeC-CCCCcceeEec-ccCCCCcCceEECCCCC-EEEEee
Q 018474          203 FVVVCESWKFRCRRYWLK-GDRAGILDAFI-ENLPGGPDNINLAPDGS-FWIGLI  254 (355)
Q Consensus       203 ~l~v~~~~~~~i~~~~~~-~~~~~~~~~~~-~~~~g~p~~i~~d~~G~-lwv~~~  254 (355)
                      .+|+++...+.|+.|+++ ..+......+. ......|.+++++++|+ +|++..
T Consensus       158 ~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~  212 (365)
T 1jof_A          158 YLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALME  212 (365)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEET
T ss_pred             EEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEEC
Confidence            999999878899999986 33221111111 01123588899999996 566653

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.27  E-value=1.3e-09  Score=94.94  Aligned_cols=194  Identities=12%  Similarity=0.085  Sum_probs=129.0

Q ss_pred             ccCeEECCCCCEEEEeCCC---cEEEEc-CCC--eEEEcCCc-CCcccEEEccCCcEEEEeCCCCCCCccccccccccCC
Q 018474           96 LLGLTTTKDGGVILCDNEK---GLLKVT-EEG--VEAIVPDA-SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKP  168 (355)
Q Consensus        96 ~~gl~~d~~g~L~v~~~~~---gl~~~~-~~g--~~~~~~~~-~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~  168 (355)
                      . ||.++ ++.||+++...   .+.++| ++|  ...+.... .+..+++++ .++||+.+..                 
T Consensus        46 q-GL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~-g~~ly~ltw~-----------------  105 (262)
T 3nol_A           46 E-GFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW-KDKIVGLTWK-----------------  105 (262)
T ss_dssp             E-EEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESS-----------------
T ss_pred             c-eEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe-CCEEEEEEee-----------------
Confidence            6 99998 78999998553   478888 477  44443221 344556665 3489998754                 


Q ss_pred             CCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCC-cceeEecccCC-CCcCceEECCC
Q 018474          169 YGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRA-GILDAFIENLP-GGPDNINLAPD  246 (355)
Q Consensus       169 ~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~-g~p~~i~~d~~  246 (355)
                      .+.++.||+++.+...-..-  .+.|..+++|++.||+++ +.+.|+.+|.+..+. +..++-.++.+ ..++.+... +
T Consensus       106 ~~~v~v~D~~t~~~~~ti~~--~~eG~glt~dg~~L~~Sd-Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~  181 (262)
T 3nol_A          106 NGLGFVWNIRNLRQVRSFNY--DGEGWGLTHNDQYLIMSD-GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-D  181 (262)
T ss_dssp             SSEEEEEETTTCCEEEEEEC--SSCCCCEEECSSCEEECC-SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-T
T ss_pred             CCEEEEEECccCcEEEEEEC--CCCceEEecCCCEEEEEC-CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-C
Confidence            56899999988875433222  235666667888899998 478999999865332 22221111111 223345554 6


Q ss_pred             CCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCC--------ccc
Q 018474          247 GSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDAT--------YIS  318 (355)
Q Consensus       247 G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~--------~~~  318 (355)
                      |++|+..+..                                    ..|.++||++|+++..+....-.        ...
T Consensus       182 G~lyan~w~~------------------------------------~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~  225 (262)
T 3nol_A          182 GEIFANVWQT------------------------------------NKIVRIDPETGKVTGIIDLNGILAEAGPLPSPID  225 (262)
T ss_dssp             TEEEEEETTS------------------------------------SEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCC
T ss_pred             CEEEEEEccC------------------------------------CeEEEEECCCCcEEEEEECCcCccccccccCcCC
Confidence            8999988652                                    37999999999999988763211        122


Q ss_pred             ceeEEEEe--CCEEEEeecCCCeEEEeeCCCCC
Q 018474          319 FVTSAAEF--DGNLYLASLQSNFIGILPLDGPE  349 (355)
Q Consensus       319 ~~~~~~~~--~g~L~v~~~~~~~i~~~~~~~~~  349 (355)
                      ...+++.+  .++|||++..=+.+..+++....
T Consensus       226 vlNGIA~dp~~~~lfVTGK~Wp~~~ev~~~~~~  258 (262)
T 3nol_A          226 VLNGIAWDKEHHRLFVTGKLWPKVFEITLTQRV  258 (262)
T ss_dssp             CEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred             ceEEEEEcCCCCEEEEECCCCCceEEEEEecCC
Confidence            44567765  48999999999999999886543

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=99.25  E-value=3.7e-09  Score=96.61  Aligned_cols=208  Identities=12%  Similarity=0.113  Sum_probs=133.0

Q ss_pred             eEEeeccCCCcccCeEECCCCCEEEEeC-CCcEEEEcC-CC-eEEEcC-------CcCCcccEEEcc----CCcEEEEeC
Q 018474           85 LVNWKHIDSQSLLGLTTTKDGGVILCDN-EKGLLKVTE-EG-VEAIVP-------DASFTNDVIAAS----DGTLYFTVA  150 (355)
Q Consensus        85 ~~~~~~~~~~p~~gl~~d~~g~L~v~~~-~~gl~~~~~-~g-~~~~~~-------~~~~~~~l~~d~----dG~ly~~d~  150 (355)
                      .+.++.....|. +|+++++|+|||++. .+.|++++. +| .+.+..       ....+.+|+++|    +|.||++.+
T Consensus        24 ~~~va~gL~~P~-~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt  102 (347)
T 3das_A           24 LRTVATGLNSPW-GLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFT  102 (347)
T ss_dssp             EEEEECCCSSEE-EEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEE
T ss_pred             eEEeecCCCCce-EEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEe
Confidence            344555556799 999999999999997 456888875 45 443321       126789999998    488999753


Q ss_pred             CCCCCCccccccccccCCCCeEEEEeCCCC--------eEEEeec-----cccccccEEEeCCCCEEEEEe---------
Q 018474          151 STKYTPTDFYKDMAEGKPYGQLRKYDPKLK--------ETTVLHE-----GFYFANGIALSKNEDFVVVCE---------  208 (355)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~--------~~~~~~~-----~~~~pngi~~~~dg~~l~v~~---------  208 (355)
                      ..               ..++|.||..+.+        +.+++..     ..+....|+++|||. ||++.         
T Consensus       103 ~~---------------~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~-Lyvt~Gd~~~~~~~  166 (347)
T 3das_A          103 SA---------------SDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM-LYAGTGESGDTGLS  166 (347)
T ss_dssp             CS---------------SSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC-EEEECBCTTCGGGT
T ss_pred             cC---------------CCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC-EEEEECCCCCCccc
Confidence            21               1346777754431        2233322     234567799999997 99984         


Q ss_pred             ----CCCCeEEEEEeCCCC-----CcceeEecccCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccc
Q 018474          209 ----SWKFRCRRYWLKGDR-----AGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPG  279 (355)
Q Consensus       209 ----~~~~~i~~~~~~~~~-----~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (355)
                          ...+.|+|++.++.-     ....+++..++. -|.++++|++|+||++..+...                     
T Consensus       167 qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~g~~~---------------------  224 (347)
T 3das_A          167 QDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASEFGQDT---------------------  224 (347)
T ss_dssp             TCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEECCSSS---------------------
T ss_pred             cCCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCCC-CcceEEECCCCCEEEEecCCCC---------------------
Confidence                235789999987631     112234443332 3889999999999999976421                     


Q ss_pred             hhhcccCCCCCCceEEEEEeCCCCe-----------------EEEEEECCCCCcccceeEEEEeCCEEEEeecCCCeEEE
Q 018474          280 LISLLLPMGSDAGARVVKVDGNDGK-----------------IIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGI  342 (355)
Q Consensus       280 ~~~~~~~~~~~~~~~v~~~~~~~g~-----------------~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~  342 (355)
                                  ...|.++.+ .+.                 .+..|. +.   ...++++...+|.+|++.+.+.+|.+
T Consensus       225 ------------~deln~i~~-G~nyGwP~~~g~~~~~~~~~P~~~~~-~~---~~ap~G~~~~~g~~~~~~l~~~~l~~  287 (347)
T 3das_A          225 ------------WDELNAIKP-GDNYGWPEAEGKGGGSGFHDPVAQWS-TD---EASPSGIAYAEGSVWMAGLRGERLWR  287 (347)
T ss_dssp             ------------CEEEEEECT-TCBCCTTTCCSSCCCTTCCCCSEEEC-TT---TCCEEEEEEETTEEEEEESTTCSEEE
T ss_pred             ------------CceeeEEcC-CCEecCCcccCCCCCccccCCcEecC-CC---CCCCcceEEEcCceeeccccCCEEEE
Confidence                        012222221 110                 011111 11   12456778889999999999999999


Q ss_pred             eeCCCC
Q 018474          343 LPLDGP  348 (355)
Q Consensus       343 ~~~~~~  348 (355)
                      +++...
T Consensus       288 v~~~~~  293 (347)
T 3das_A          288 IPLKGT  293 (347)
T ss_dssp             EEEETT
T ss_pred             EEecCC
Confidence            998754

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.25  E-value=5.2e-09  Score=94.84  Aligned_cols=216  Identities=15%  Similarity=0.097  Sum_probs=132.1

Q ss_pred             CCceEEEeeCCCeEEEEe-cCCEEEEEEcCCCeeEEeeccC-------CCcccCeEECCCCC-EEEEeCC----------
Q 018474           53 HPEDVSVVVSKGALYTAT-RDGWVKYFILHNETLVNWKHID-------SQSLLGLTTTKDGG-VILCDNE----------  113 (355)
Q Consensus        53 ~p~~i~~d~~~g~l~~~~-~~g~i~~~~~~~g~~~~~~~~~-------~~p~~gl~~d~~g~-L~v~~~~----------  113 (355)
                      .|.+++++++++.+|++. .++.|+.+|..+++........       ..+. +++++++|+ ||++...          
T Consensus        44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~-~~~~spdg~~l~~~~~~~~~~~~~~~~  122 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMY-SFAISPDGKEVYATVNPTQRLNDHYVV  122 (349)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSS-CEEECTTSSEEEEEEEEEEECSSCEEE
T ss_pred             CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccccccccccc-ceEECCCCCEEEEEccccccccccccc
Confidence            699999996666788776 4789999999888765433322       2278 999999996 6666532          


Q ss_pred             --CcEEEEc-CCC-----eEEEcCCcCCcccEEEccCCcEEEEeCCC-CCCCccc-cccccc-cC---------------
Q 018474          114 --KGLLKVT-EEG-----VEAIVPDASFTNDVIAASDGTLYFTVAST-KYTPTDF-YKDMAE-GK---------------  167 (355)
Q Consensus       114 --~gl~~~~-~~g-----~~~~~~~~~~~~~l~~d~dG~ly~~d~~~-~~~~~~~-~~~~~~-~~---------------  167 (355)
                        +.++.++ .++     ++..... ..+.+++++++|++|+++..- .+..... ....+. +.               
T Consensus       123 ~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~l~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (349)
T 1jmx_B          123 KPPRLEVFSTADGLEAKPVRTFPMP-RQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFW  201 (349)
T ss_dssp             CCCEEEEEEGGGGGGBCCSEEEECC-SSCCCEEECTTSCEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCC
T ss_pred             CCCeEEEEECCCccccceeeeccCC-CcccceeECCCCcEEEccCcEEEEeCCCCceeccccccccCCccccCccceeee
Confidence              4677777 343     2222222 467888999999988864320 0111000 000000 00               


Q ss_pred             -----------------------------CCCeEEEEeCCCCeEEEee--ccccccccEEEeC-CCCEEEEEeCCCCeEE
Q 018474          168 -----------------------------PYGQLRKYDPKLKETTVLH--EGFYFANGIALSK-NEDFVVVCESWKFRCR  215 (355)
Q Consensus       168 -----------------------------~~g~l~~~dp~~~~~~~~~--~~~~~pngi~~~~-dg~~l~v~~~~~~~i~  215 (355)
                                                   ....++.+|..+++++.+.  .....+.+++++| |++.+|++   .+.|.
T Consensus       202 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~---~~~v~  278 (349)
T 1jmx_B          202 PHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV---LNRLA  278 (349)
T ss_dssp             CCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE---ESEEE
T ss_pred             cCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE---cCeEE
Confidence                                         0001223555555544332  1123567889999 99988888   57899


Q ss_pred             EEEeCCCCCcceeEecccCCCCcCceEECCCCC-EEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceE
Q 018474          216 RYWLKGDRAGILDAFIENLPGGPDNINLAPDGS-FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGAR  294 (355)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (355)
                      +|+++..+.  ...+  ..+..|.+++++++|+ +|++...                                     +.
T Consensus       279 ~~d~~~~~~--~~~~--~~~~~~~~~~~s~dg~~l~~~~~~-------------------------------------~~  317 (349)
T 1jmx_B          279 KYDLKQRKL--IKAA--NLDHTYYCVAFDKKGDKLYLGGTF-------------------------------------ND  317 (349)
T ss_dssp             EEETTTTEE--EEEE--ECSSCCCEEEECSSSSCEEEESBS-------------------------------------SE
T ss_pred             EEECccCeE--EEEE--cCCCCccceEECCCCCEEEEecCC-------------------------------------Ce
Confidence            999854321  1122  1233478899999985 7774322                                     46


Q ss_pred             EEEEeCCCCeEEEEEECCCC
Q 018474          295 VVKVDGNDGKIIRDFNDPDA  314 (355)
Q Consensus       295 v~~~~~~~g~~~~~~~~~~g  314 (355)
                      |..+|.++++.+..+..+.|
T Consensus       318 v~v~d~~~~~~~~~~~~~~~  337 (349)
T 1jmx_B          318 LAVFNPDTLEKVKNIKLPGG  337 (349)
T ss_dssp             EEEEETTTTEEEEEEECSSS
T ss_pred             EEEEeccccceeeeeecCCC
Confidence            88889867888888877643

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=99.21  E-value=1.5e-09  Score=100.10  Aligned_cols=199  Identities=13%  Similarity=0.121  Sum_probs=118.6

Q ss_pred             CCCceEEEeeC---CCeEEEEec--------CCEEEEEEcCCC--e---eEEeec-c------CCCcccCeEECCCCCEE
Q 018474           52 NHPEDVSVVVS---KGALYTATR--------DGWVKYFILHNE--T---LVNWKH-I------DSQSLLGLTTTKDGGVI  108 (355)
Q Consensus        52 ~~p~~i~~d~~---~g~l~~~~~--------~g~i~~~~~~~g--~---~~~~~~-~------~~~p~~gl~~d~~g~L~  108 (355)
                      .+|.+|+++|+   ++.||+...        ..+|.+++...+  +   .+.+.. .      ...+. +|+++++|.||
T Consensus        66 ~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~-~l~~~pdG~Ly  144 (353)
T 2g8s_A           66 GGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGG-RLVFDGKGYLF  144 (353)
T ss_dssp             CSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCC-CEEECSSSEEE
T ss_pred             CCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCc-cEEECCCCcEE
Confidence            56889999964   789998753        247888877433  2   222211 1      12377 89999999999


Q ss_pred             EEeCC--------------CcEEEEcCCC-e--------------EEEcCCcCCcccEEEcc-CCcEEEEeCCCCCCCcc
Q 018474          109 LCDNE--------------KGLLKVTEEG-V--------------EAIVPDASFTNDVIAAS-DGTLYFTVASTKYTPTD  158 (355)
Q Consensus       109 v~~~~--------------~gl~~~~~~g-~--------------~~~~~~~~~~~~l~~d~-dG~ly~~d~~~~~~~~~  158 (355)
                      ++...              +.|+|++++| +              +.++.....|.++++|+ +|+||+++.....  .+
T Consensus       145 v~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~--~d  222 (353)
T 2g8s_A          145 IALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRG--GD  222 (353)
T ss_dssp             EEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBS--CE
T ss_pred             EEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCC--Cc
Confidence            99633              2488998654 2              22333337799999999 7999999865210  01


Q ss_pred             ccccccccCCCCeE-----EEEeC----------CCCeEEE--eeccccccccEEEeC-------CCCEEEEEeCCCCeE
Q 018474          159 FYKDMAEGKPYGQL-----RKYDP----------KLKETTV--LHEGFYFANGIALSK-------NEDFVVVCESWKFRC  214 (355)
Q Consensus       159 ~~~~~~~~~~~g~l-----~~~dp----------~~~~~~~--~~~~~~~pngi~~~~-------dg~~l~v~~~~~~~i  214 (355)
                      ....+..+...|.-     ..|+.          ..+....  .......|.|+++..       +| .+|+++...++|
T Consensus       223 ei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g-~l~v~~~~~~~v  301 (353)
T 2g8s_A          223 EINIPQKGKNYGWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQ-KLFIGALKDKDV  301 (353)
T ss_dssp             EEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTT-EEEEEETTTTEE
T ss_pred             EEeEeccCCcCCCCCccCCCCCCCCccCcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCC-cEEEEEccCCEE
Confidence            11111111000000     00000          0000000  001123578888875       34 599999999999


Q ss_pred             EEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEee
Q 018474          215 RRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLI  254 (355)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~  254 (355)
                      +++++++.+....+.+.....+.|.++++++||.|||++.
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td  341 (353)
T 2g8s_A          302 IVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTD  341 (353)
T ss_dssp             EEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEEC
T ss_pred             EEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEe
Confidence            9999875332222334433345689999999999999864

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.18  E-value=1.1e-08  Score=96.30  Aligned_cols=237  Identities=13%  Similarity=0.015  Sum_probs=139.0

Q ss_pred             CCCeEEEEecC-----CEEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeC----------CCcEEEEcC-CC-
Q 018474           62 SKGALYTATRD-----GWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDN----------EKGLLKVTE-EG-  123 (355)
Q Consensus        62 ~~g~l~~~~~~-----g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~----------~~gl~~~~~-~g-  123 (355)
                      +...+|+.+..     +.|..+|+.+++...-...+..|  +++++++|+ |||++.          .+.+..+|. ++ 
T Consensus        83 ~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~  160 (426)
T 3c75_H           83 DARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL  160 (426)
T ss_dssp             CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred             CCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc
Confidence            46789998763     68999999999876655555566  799999985 999974          234778884 55 


Q ss_pred             -eEEEcCC-------cCCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecc----cc
Q 018474          124 -VEAIVPD-------ASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG----FY  190 (355)
Q Consensus       124 -~~~~~~~-------~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~----~~  190 (355)
                       +..+...       ...|.++++++|| .+|+++...                .+.+..+|.+++++..-..-    ..
T Consensus       161 vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~----------------~~~VsVID~~t~kvv~~I~v~g~~~~  224 (426)
T 3c75_H          161 PIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSP----------------APAVGVVDLEGKTFDRMLDVPDCYHI  224 (426)
T ss_dssp             EEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSS----------------SCEEEEEETTTTEEEEEEECCSEEEE
T ss_pred             EEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCC----------------CCeEEEEECCCCeEEEEEEcCCceee
Confidence             4444321       1579999999999 799987420                12344444444433211100    00


Q ss_pred             ccc-----------------------------------------cEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCc---c
Q 018474          191 FAN-----------------------------------------GIALSKNEDFVVVCESWKFRCRRYWLKGDRAG---I  226 (355)
Q Consensus       191 ~pn-----------------------------------------gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~---~  226 (355)
                      .|.                                         .++++++++.+|+... .+.++.++..+....   .
T Consensus       225 ~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~-~g~V~ViD~~~~~~~v~~~  303 (426)
T 3c75_H          225 FPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY-TGKIFQADLTAEGATFRAP  303 (426)
T ss_dssp             EEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT-TSEEEEEEECSSCEEECCC
T ss_pred             ccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC-CCcEEEEeccCCceEEeee
Confidence            111                                         2234566665555543 456666666432211   1


Q ss_pred             eeEecc---cCCCCcCc---eEECCCC-CEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEe
Q 018474          227 LDAFIE---NLPGGPDN---INLAPDG-SFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVD  299 (355)
Q Consensus       227 ~~~~~~---~~~g~p~~---i~~d~~G-~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  299 (355)
                      .+...+   .....|.+   +.++++| ++||+........                           .....+.|..+|
T Consensus       304 ~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gt---------------------------hk~~s~~VsVID  356 (426)
T 3c75_H          304 IEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWK---------------------------HKAASRFVVVLN  356 (426)
T ss_dssp             EESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTC---------------------------TTSCEEEEEEEE
T ss_pred             eeeccccccccccccCCceeeEEcCCCCEEEEEeccccccc---------------------------ccCCCCEEEEEE
Confidence            100000   00012333   7777776 5888875310000                           001225799999


Q ss_pred             CCCCeEEEEEECCCCCcccceeEEEE--eCC-EEEEeecCCCeEEEeeCCCCC
Q 018474          300 GNDGKIIRDFNDPDATYISFVTSAAE--FDG-NLYLASLQSNFIGILPLDGPE  349 (355)
Q Consensus       300 ~~~g~~~~~~~~~~g~~~~~~~~~~~--~~g-~L~v~~~~~~~i~~~~~~~~~  349 (355)
                      .++++.+..+..+.     .+.++..  ++. .||+++..++.|.++++.+-.
T Consensus       357 ~~T~kvv~~I~vg~-----~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~k  404 (426)
T 3c75_H          357 AETGERINKIELGH-----EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGE  404 (426)
T ss_dssp             TTTCCEEEEEEEEE-----EECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             CCCCeEEEEEECCC-----CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCC
Confidence            97889888886532     2333443  345 788888889999999987654

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.18  E-value=8.2e-08  Score=86.21  Aligned_cols=229  Identities=11%  Similarity=0.045  Sum_probs=146.4

Q ss_pred             CCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeE---EeeccCCCcccCeEECCCCCEEE-EeCCCcEEEEc-CCC--e
Q 018474           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLV---NWKHIDSQSLLGLTTTKDGGVIL-CDNEKGLLKVT-EEG--V  124 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~---~~~~~~~~p~~gl~~d~~g~L~v-~~~~~gl~~~~-~~g--~  124 (355)
                      ....++++.+++..++++..+|.|..++..+++..   .+......+. .+++.+++++++ +...+.+..++ .++  .
T Consensus        98 ~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~  176 (337)
T 1gxr_A           98 NYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACY-ALAISPDSKVCFSCCSDGNIAVWDLHNQTLV  176 (337)
T ss_dssp             SBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEE-EEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred             CcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceE-EEEECCCCCEEEEEeCCCcEEEEeCCCCcee
Confidence            44678889876777888889999999998777532   2222234466 889998887544 54444567777 455  4


Q ss_pred             EEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEE
Q 018474          125 EAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFV  204 (355)
Q Consensus       125 ~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l  204 (355)
                      ..+......+.+++++++|+..++...                 .+.+..||..+++.............++++|+++.+
T Consensus       177 ~~~~~~~~~i~~~~~~~~~~~l~~~~~-----------------dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l  239 (337)
T 1gxr_A          177 RQFQGHTDGASCIDISNDGTKLWTGGL-----------------DNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWL  239 (337)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEET-----------------TSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEE
T ss_pred             eeeecccCceEEEEECCCCCEEEEEec-----------------CCcEEEEECCCCceEeeecCCCceEEEEECCCCCEE
Confidence            555444467889999999976655332                 567999998877655444334446788999999977


Q ss_pred             EEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcc
Q 018474          205 VVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLL  284 (355)
Q Consensus       205 ~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (355)
                      +++. ..+.|..|+++....   ..+. ...+....+.++++|++.++....                            
T Consensus       240 ~~~~-~~~~i~~~~~~~~~~---~~~~-~~~~~v~~~~~~~~~~~l~~~~~d----------------------------  286 (337)
T 1gxr_A          240 AVGM-ESSNVEVLHVNKPDK---YQLH-LHESCVLSLKFAYCGKWFVSTGKD----------------------------  286 (337)
T ss_dssp             EEEE-TTSCEEEEETTSSCE---EEEC-CCSSCEEEEEECTTSSEEEEEETT----------------------------
T ss_pred             EEEc-CCCcEEEEECCCCCe---EEEc-CCccceeEEEECCCCCEEEEecCC----------------------------
Confidence            6665 567899999865322   1222 233345668899999876665432                            


Q ss_pred             cCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEe-CC-EEEEeecCCCeEEEeeC
Q 018474          285 LPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-DG-NLYLASLQSNFIGILPL  345 (355)
Q Consensus       285 ~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g-~L~v~~~~~~~i~~~~~  345 (355)
                              +.|..++.++++....... .+    .+..+... ++ .|..++ ..+.|..+++
T Consensus       287 --------g~i~~~~~~~~~~~~~~~~-~~----~v~~~~~s~~~~~l~~~~-~dg~i~iw~~  335 (337)
T 1gxr_A          287 --------NLLNAWRTPYGASIFQSKE-SS----SVLSCDISVDDKYIVTGS-GDKKATVYEV  335 (337)
T ss_dssp             --------SEEEEEETTTCCEEEEEEC-SS----CEEEEEECTTSCEEEEEE-TTSCEEEEEE
T ss_pred             --------CcEEEEECCCCeEEEEecC-CC----cEEEEEECCCCCEEEEec-CCCeEEEEEE
Confidence                    4677788656666544432 22    35555544 34 444444 4666766653

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.17  E-value=1.6e-07  Score=84.16  Aligned_cols=244  Identities=11%  Similarity=0.138  Sum_probs=152.9

Q ss_pred             CCCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeec-cCCCcccCeEECCCCCEEEEeCCCc-EEEEc-CCC-
Q 018474           48 EGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH-IDSQSLLGLTTTKDGGVILCDNEKG-LLKVT-EEG-  123 (355)
Q Consensus        48 ~~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~-~~~~p~~gl~~d~~g~L~v~~~~~g-l~~~~-~~g-  123 (355)
                      .+.-..-.++++.+++..+.+++.+|.|..++..+++...... ....+. .+++.++|+++++...++ +..++ .++ 
T Consensus        20 ~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~~~d~~i~vwd~~~~~   98 (312)
T 4ery_A           20 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-DVAWSSDSNLLVSASDDKTLKIWDVSSGK   98 (312)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             cccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceE-EEEEcCCCCEEEEECCCCEEEEEECCCCc
Confidence            3445567889999777778888899999999988777654332 233466 889999998766554555 44555 455 


Q ss_pred             -eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecc-ccccccEEEeCCC
Q 018474          124 -VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG-FYFANGIALSKNE  201 (355)
Q Consensus       124 -~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~-~~~pngi~~~~dg  201 (355)
                       +..+......+..+.+++++++.++.+.                 .+.+..||..+++....... ......+++++++
T Consensus        99 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-----------------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  161 (312)
T 4ery_A           99 CLKTLKGHSNYVFCCNFNPQSNLIVSGSF-----------------DESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG  161 (312)
T ss_dssp             EEEEEECCSSCEEEEEECSSSSEEEEEET-----------------TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS
T ss_pred             EEEEEcCCCCCEEEEEEcCCCCEEEEEeC-----------------CCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCC
Confidence             5555444467888999999987766433                 45788899877764333222 2334678999999


Q ss_pred             CEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchh
Q 018474          202 DFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLI  281 (355)
Q Consensus       202 ~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (355)
                      +.++.+ ...+.|..|++....  ....+..........+.++++|++.++....                         
T Consensus       162 ~~l~~~-~~d~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-------------------------  213 (312)
T 4ery_A          162 SLIVSS-SYDGLCRIWDTASGQ--CLKTLIDDDNPPVSFVKFSPNGKYILAATLD-------------------------  213 (312)
T ss_dssp             SEEEEE-ETTSCEEEEETTTCC--EEEEECCSSCCCEEEEEECTTSSEEEEEETT-------------------------
T ss_pred             CEEEEE-eCCCcEEEEECCCCc--eeeEEeccCCCceEEEEECCCCCEEEEEcCC-------------------------
Confidence            965554 456789899875432  1222221111223446788999876665432                         


Q ss_pred             hcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeCCEEEEeecCCCeEEEeeCCCC
Q 018474          282 SLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLDGP  348 (355)
Q Consensus       282 ~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~~~  348 (355)
                                 +.|..+|..+++.+..+..+..............++.+.++....+.|..+++.+.
T Consensus       214 -----------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~  269 (312)
T 4ery_A          214 -----------NTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK  269 (312)
T ss_dssp             -----------TEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTC
T ss_pred             -----------CeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCc
Confidence                       35777787677877777665443222222222234555555555667777776543

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.17  E-value=6.7e-09  Score=90.47  Aligned_cols=146  Identities=21%  Similarity=0.178  Sum_probs=104.6

Q ss_pred             CCCceEEEeeCCCeEEEEec-CCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEcC-CC--eEEE
Q 018474           52 NHPEDVSVVVSKGALYTATR-DGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE-EG--VEAI  127 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~-~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~-~g--~~~~  127 (355)
                      .-.|+++.+  ++.+|+.+. ++.++.+|+++.+...-........ |++.| .++||+++....+..+|+ +.  ...+
T Consensus        87 ~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~-glt~d-g~~L~~SdGs~~i~~iDp~T~~v~~~I  162 (262)
T 3nol_A           87 YFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEGW-GLTHN-DQYLIMSDGTPVLRFLDPESLTPVRTI  162 (262)
T ss_dssp             CCEEEEEEE--TTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCC-CEEEC-SSCEEECCSSSEEEEECTTTCSEEEEE
T ss_pred             cceeEEEEe--CCEEEEEEeeCCEEEEEECccCcEEEEEECCCCce-EEecC-CCEEEEECCCCeEEEEcCCCCeEEEEE
Confidence            345888887  678999875 7899999998887654333344567 88876 468999986566888885 44  3333


Q ss_pred             cC-----CcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecc-------------c
Q 018474          128 VP-----DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG-------------F  189 (355)
Q Consensus       128 ~~-----~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~-------------~  189 (355)
                      ..     ....+|.+... +|.||+....                 .+.|.++||+++++....+-             .
T Consensus       163 ~V~~~g~~~~~lNELe~~-~G~lyan~w~-----------------~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~  224 (262)
T 3nol_A          163 TVTAHGEELPELNELEWV-DGEIFANVWQ-----------------TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPI  224 (262)
T ss_dssp             ECEETTEECCCEEEEEEE-TTEEEEEETT-----------------SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSC
T ss_pred             EeccCCccccccceeEEE-CCEEEEEEcc-----------------CCeEEEEECCCCcEEEEEECCcCccccccccCcC
Confidence            22     12667778765 7899998754                 45899999999987644321             2


Q ss_pred             cccccEEEeCCCCEEEEEeCCCCeEEEEEe
Q 018474          190 YFANGIALSKNEDFVVVCESWKFRCRRYWL  219 (355)
Q Consensus       190 ~~pngi~~~~dg~~l~v~~~~~~~i~~~~~  219 (355)
                      ..+||||++|+++.+|++.-.=..++.+.+
T Consensus       225 ~vlNGIA~dp~~~~lfVTGK~Wp~~~ev~~  254 (262)
T 3nol_A          225 DVLNGIAWDKEHHRLFVTGKLWPKVFEITL  254 (262)
T ss_dssp             CCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred             CceEEEEEcCCCCEEEEECCCCCceEEEEE
Confidence            367999999999999999754445555543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.16  E-value=4e-09  Score=91.88  Aligned_cols=192  Identities=14%  Similarity=0.137  Sum_probs=126.2

Q ss_pred             cccCeEECCCCCEEEEeCCCc-EEEEc-CCC--eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCC
Q 018474           95 SLLGLTTTKDGGVILCDNEKG-LLKVT-EEG--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYG  170 (355)
Q Consensus        95 p~~gl~~d~~g~L~v~~~~~g-l~~~~-~~g--~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g  170 (355)
                      .. ||.++ +++||+++...| |.++| ++|  +..+.....+..+++++. ++||+.+..                 .+
T Consensus        57 tq-GL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~g-~~Ly~ltw~-----------------~~  116 (268)
T 3nok_A           57 TQ-GLVFH-QGHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASDG-ERLYQLTWT-----------------EG  116 (268)
T ss_dssp             EE-EEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEECS-SCEEEEESS-----------------SC
T ss_pred             cc-eEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEeC-CEEEEEEcc-----------------CC
Confidence            35 89987 589999997754 66667 467  444422213445566653 489998754                 56


Q ss_pred             eEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCC-cceeEecccCC-CCcCceEECCCCC
Q 018474          171 QLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRA-GILDAFIENLP-GGPDNINLAPDGS  248 (355)
Q Consensus       171 ~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~-g~p~~i~~d~~G~  248 (355)
                      .++.||+++.+...-..-  .+.|..+++|++.||+++ +.+.|+.+|.+..+. +..++-....+ ..++.+... +|+
T Consensus       117 ~v~V~D~~Tl~~~~ti~~--~~eGwGLt~Dg~~L~vSd-Gs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~  192 (268)
T 3nok_A          117 LLFTWSGMPPQRERTTRY--SGEGWGLCYWNGKLVRSD-GGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGV  192 (268)
T ss_dssp             EEEEEETTTTEEEEEEEC--SSCCCCEEEETTEEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred             EEEEEECCcCcEEEEEeC--CCceeEEecCCCEEEEEC-CCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCE
Confidence            899999998876533322  245566667889999998 588999999765332 22221111111 123445554 789


Q ss_pred             EEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCC---------CCcccc
Q 018474          249 FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPD---------ATYISF  319 (355)
Q Consensus       249 lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~---------g~~~~~  319 (355)
                      +|+..+..                                    ..|.++||++|+++..+.-..         ......
T Consensus       193 lyanvw~s------------------------------------~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~v  236 (268)
T 3nok_A          193 IYANIWHS------------------------------------SDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAV  236 (268)
T ss_dssp             EEEEETTC------------------------------------SEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCC
T ss_pred             EEEEECCC------------------------------------CeEEEEeCCCCcEEEEEECCCCcccccccccCcCCc
Confidence            99988652                                    379999999999988885421         001234


Q ss_pred             eeEEEEe--CCEEEEeecCCCeEEEeeCC
Q 018474          320 VTSAAEF--DGNLYLASLQSNFIGILPLD  346 (355)
Q Consensus       320 ~~~~~~~--~g~L~v~~~~~~~i~~~~~~  346 (355)
                      ..+++.+  +++||+++..=+++..++++
T Consensus       237 lNGIA~dp~~~rlfVTGK~Wp~~~ev~~~  265 (268)
T 3nok_A          237 LNGIAVEPGSGRIFMTGKLWPRLFEVRLD  265 (268)
T ss_dssp             EEEEEECTTTCCEEEEETTCSEEEEEEEE
T ss_pred             eEEEEEcCCCCEEEEeCCCCCceEEEEEE
Confidence            5566655  48899999999999988873

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.16  E-value=5e-09  Score=98.54  Aligned_cols=223  Identities=13%  Similarity=0.086  Sum_probs=138.5

Q ss_pred             eEecCCCCCCCceEEEeeCCCeEEEEec----------CCEEEEEEcCCCeeEEeecc--------CCCcccCeEECCCC
Q 018474           44 TKLGEGCVNHPEDVSVVVSKGALYTATR----------DGWVKYFILHNETLVNWKHI--------DSQSLLGLTTTKDG  105 (355)
Q Consensus        44 ~~~~~~~~~~p~~i~~d~~~g~l~~~~~----------~g~i~~~~~~~g~~~~~~~~--------~~~p~~gl~~d~~g  105 (355)
                      .+++.|  ..| +|+++++++.+|+++.          ++.|..+|..+++.......        +..|. +++++++|
T Consensus       113 ~~I~vG--~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~-~~~~spDG  188 (426)
T 3c75_H          113 GMTDGG--FLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQW-MNALTPDN  188 (426)
T ss_dssp             EEEEEC--SSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGG-GSEECTTS
T ss_pred             EEEECC--CCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcc-eEEEcCCC
Confidence            356666  568 9999988899999873          56799999988876543322        35699 99999998


Q ss_pred             C-EEEEeCC--CcEEEEc-CCC--eEEEcCCc---CCccc----EEEccCCcEE-EEeCCCC--------CCCccc----
Q 018474          106 G-VILCDNE--KGLLKVT-EEG--VEAIVPDA---SFTND----VIAASDGTLY-FTVASTK--------YTPTDF----  159 (355)
Q Consensus       106 ~-L~v~~~~--~gl~~~~-~~g--~~~~~~~~---~~~~~----l~~d~dG~ly-~~d~~~~--------~~~~~~----  159 (355)
                      + |||+...  +.+..+| .++  +..+....   ..|.+    +++.++|++. ++....+        +.....    
T Consensus       189 k~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~  268 (426)
T 3c75_H          189 KNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLIN  268 (426)
T ss_dssp             SEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCS
T ss_pred             CEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceee
Confidence            5 8998753  4588888 455  44443321   12222    5667788544 4432111        110000    


Q ss_pred             -------cccccccCCCCeEEEEeCCCCeEEEeec----------ccccccc---EEEeCCCCEEEEEeCC---------
Q 018474          160 -------YKDMAEGKPYGQLRKYDPKLKETTVLHE----------GFYFANG---IALSKNEDFVVVCESW---------  210 (355)
Q Consensus       160 -------~~~~~~~~~~g~l~~~dp~~~~~~~~~~----------~~~~png---i~~~~dg~~l~v~~~~---------  210 (355)
                             ...++.....+.++.+|..++..+....          ....|.|   +++++|++.+|++...         
T Consensus       269 ~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~  348 (426)
T 3c75_H          269 HPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAA  348 (426)
T ss_dssp             CCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSC
T ss_pred             EeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCC
Confidence                   0011111224567777765554433211          0123555   8999999999998642         


Q ss_pred             CCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCC-EEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCC
Q 018474          211 KFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGS-FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGS  289 (355)
Q Consensus       211 ~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (355)
                      .+.|+++|....+.  ...+  ..+..|.++.+++||+ +|+.++..                                 
T Consensus       349 s~~VsVID~~T~kv--v~~I--~vg~~P~gia~spDg~~~lyv~n~~---------------------------------  391 (426)
T 3c75_H          349 SRFVVVLNAETGER--INKI--ELGHEIDSINVSQDAEPLLYALSAG---------------------------------  391 (426)
T ss_dssp             EEEEEEEETTTCCE--EEEE--EEEEEECEEEECCSSSCEEEEEETT---------------------------------
T ss_pred             CCEEEEEECCCCeE--EEEE--ECCCCcCeEEEccCCCEEEEEEcCC---------------------------------
Confidence            34799999754322  1112  1233599999999998 76666531                                 


Q ss_pred             CCceEEEEEeCCCCeEEEEE
Q 018474          290 DAGARVVKVDGNDGKIIRDF  309 (355)
Q Consensus       290 ~~~~~v~~~~~~~g~~~~~~  309 (355)
                        .+.|..+|.++++.+..+
T Consensus       392 --s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          392 --TQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             --TTEEEEEETTTCCEEEEE
T ss_pred             --CCeEEEEECCCCCEEEEe
Confidence              146999998788988877

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.16  E-value=4.7e-08  Score=95.59  Aligned_cols=227  Identities=9%  Similarity=-0.046  Sum_probs=151.1

Q ss_pred             CCeEEEEec-CCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCCCcEEEEcC---CC--eEEEcCCcCCcc
Q 018474           63 KGALYTATR-DGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEKGLLKVTE---EG--VEAIVPDASFTN  135 (355)
Q Consensus        63 ~g~l~~~~~-~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~~gl~~~~~---~g--~~~~~~~~~~~~  135 (355)
                      ++.+|+... ++.|..+|..+++.......+..|+ +++++++|+ +|++...+.+..+|.   ++  +..+... ..|.
T Consensus       166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~-~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P~  243 (567)
T 1qks_A          166 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVH-ISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEAR  243 (567)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEE-EEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEEE
T ss_pred             CceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCcc-ceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCCc
Confidence            567887765 6899999998887765455566799 999999996 788876566888884   44  3334332 5799


Q ss_pred             cEEEc----cCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeec-cc-----------cccccEEEe
Q 018474          136 DVIAA----SDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE-GF-----------YFANGIALS  198 (355)
Q Consensus       136 ~l~~d----~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~-~~-----------~~pngi~~~  198 (355)
                      +++++    +|| .+|+++..                 .+.+..+|..+.+...... ..           ....++..+
T Consensus       244 ~ia~s~~~~pDGk~l~v~n~~-----------------~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s  306 (567)
T 1qks_A          244 SIETSKMEGWEDKYAIAGAYW-----------------PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILAS  306 (567)
T ss_dssp             EEEECCSTTCTTTEEEEEEEE-----------------TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEEC
T ss_pred             eeEEccccCCCCCEEEEEEcc-----------------CCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEc
Confidence            99999    698 68888643                 4578888887776543221 10           123468888


Q ss_pred             CCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCE-EEEeecCCchhhHhhhcchhHHHHHHhc
Q 018474          199 KNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSF-WIGLIKMNQTGVRAIQKCREKWELLDAY  277 (355)
Q Consensus       199 ~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~l-wv~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (355)
                      +++..++++....+.|+.++....+.-....+  ....++.++.+|++|++ |+++...                     
T Consensus       307 ~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i--~~~~~~~d~~~~pdgr~~~va~~~s---------------------  363 (567)
T 1qks_A          307 HYRPEFIVNVKETGKILLVDYTDLNNLKTTEI--SAERFLHDGGLDGSHRYFITAANAR---------------------  363 (567)
T ss_dssp             SSSSEEEEEETTTTEEEEEETTCSSEEEEEEE--ECCSSEEEEEECTTSCEEEEEEGGG---------------------
T ss_pred             CCCCEEEEEecCCCeEEEEecCCCccceeeee--eccccccCceECCCCCEEEEEeCCC---------------------
Confidence            88887888877788999999754321111111  12335778889999985 5555431                     


Q ss_pred             cchhhcccCCCCCCceEEEEEeCCCCeEEEEEEC-CCCCccc-ceeEEEEe-CCEEEEee-cCCCeEEEeeCCC
Q 018474          278 PGLISLLLPMGSDAGARVVKVDGNDGKIIRDFND-PDATYIS-FVTSAAEF-DGNLYLAS-LQSNFIGILPLDG  347 (355)
Q Consensus       278 ~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~-~~g~~~~-~~~~~~~~-~g~L~v~~-~~~~~i~~~~~~~  347 (355)
                                     +.|..+|.++++....+.. ... ... ....+... .+.+|+.+ ..++.|.+++.++
T Consensus       364 ---------------n~V~ViD~~t~kl~~~i~vgg~~-Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~  421 (567)
T 1qks_A          364 ---------------NKLVVIDTKEGKLVAIEDTGGQT-PHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDP  421 (567)
T ss_dssp             ---------------TEEEEEETTTTEEEEEEECSSSS-BCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             ---------------CeEEEEECCCCcEEEEEeccCcC-CCCccceeeECCCCCcEEEeCCCCCCeEEEecCCC
Confidence                           3588899878887776644 221 111 11122222 47899865 5668999999876

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.15  E-value=3.1e-07  Score=83.07  Aligned_cols=237  Identities=14%  Similarity=0.103  Sum_probs=153.3

Q ss_pred             CCCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEee-ccCCCcccCeEECCCCCEEEEeCCCc-EEEEc-CCC-
Q 018474           48 EGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWK-HIDSQSLLGLTTTKDGGVILCDNEKG-LLKVT-EEG-  123 (355)
Q Consensus        48 ~~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~-~~~~~p~~gl~~d~~g~L~v~~~~~g-l~~~~-~~g-  123 (355)
                      .|.-..-.++.+.+.+..+..++.++.|..+|..+++..... ....... .+++.++|+.+++....| +..++ .++ 
T Consensus        77 ~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~-~~~~spdg~~l~~g~~dg~v~i~~~~~~~  155 (321)
T 3ow8_A           77 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAW-TLAFSPDSQYLATGTHVGKVNIFGVESGK  155 (321)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCC-CEEECTTSSEEEEECTTSEEEEEETTTCS
T ss_pred             ccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEE-EEEECCCCCEEEEEcCCCcEEEEEcCCCc
Confidence            344445567778866667778888999999999888654332 2234566 899999998776655555 45555 344 


Q ss_pred             -eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecc-ccccccEEEeCCC
Q 018474          124 -VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG-FYFANGIALSKNE  201 (355)
Q Consensus       124 -~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~-~~~pngi~~~~dg  201 (355)
                       ...+......+.+++++++|++.++.+.                 .+.+..||..+++......+ ......++++||+
T Consensus       156 ~~~~~~~~~~~v~~~~~spdg~~lasg~~-----------------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~  218 (321)
T 3ow8_A          156 KEYSLDTRGKFILSIAYSPDGKYLASGAI-----------------DGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDS  218 (321)
T ss_dssp             EEEEEECSSSCEEEEEECTTSSEEEEEET-----------------TSCEEEEETTTTEEEEEECCCSSCCCEEEECTTS
T ss_pred             eeEEecCCCceEEEEEECCCCCEEEEEcC-----------------CCeEEEEECCCCcEEEEEcccCCceeEEEEcCCC
Confidence             3334443367888999999987765433                 56788899888865433333 2335789999999


Q ss_pred             CEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchh
Q 018474          202 DFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLI  281 (355)
Q Consensus       202 ~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (355)
                      +.+ ++....+.|..|+++...  ....+. ........+.+.++|++.++....                         
T Consensus       219 ~~l-~s~s~dg~i~iwd~~~~~--~~~~~~-~h~~~v~~~~~sp~~~~l~s~s~D-------------------------  269 (321)
T 3ow8_A          219 QLL-VTASDDGYIKIYDVQHAN--LAGTLS-GHASWVLNVAFCPDDTHFVSSSSD-------------------------  269 (321)
T ss_dssp             CEE-EEECTTSCEEEEETTTCC--EEEEEC-CCSSCEEEEEECTTSSEEEEEETT-------------------------
T ss_pred             CEE-EEEcCCCeEEEEECCCcc--eeEEEc-CCCCceEEEEECCCCCEEEEEeCC-------------------------
Confidence            854 555567789999975432  122222 223334567889999877766542                         


Q ss_pred             hcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeC-CEEEEeecCCCeEEEeeCC
Q 018474          282 SLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFD-GNLYLASLQSNFIGILPLD  346 (355)
Q Consensus       282 ~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~-g~L~v~~~~~~~i~~~~~~  346 (355)
                                 +.|..+|..+++.+..+..+.+    .+..+.... ++..++.-....|...+.+
T Consensus       270 -----------~~v~iwd~~~~~~~~~~~~h~~----~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          270 -----------KSVKVWDVGTRTCVHTFFDHQD----QVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             -----------SCEEEEETTTTEEEEEECCCSS----CEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             -----------CcEEEEeCCCCEEEEEEcCCCC----cEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence                       3477778757887777766544    455566543 4444444446677777653

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.12  E-value=1.9e-08  Score=91.18  Aligned_cols=154  Identities=8%  Similarity=-0.050  Sum_probs=96.2

Q ss_pred             eEEEeeCCCeEEEE-ecCCEEEEEEcCCCeeEEeeccCC--CcccCeEECCCCC-EEEEeCC-CcEEEEcC-CC--eEEE
Q 018474           56 DVSVVVSKGALYTA-TRDGWVKYFILHNETLVNWKHIDS--QSLLGLTTTKDGG-VILCDNE-KGLLKVTE-EG--VEAI  127 (355)
Q Consensus        56 ~i~~d~~~g~l~~~-~~~g~i~~~~~~~g~~~~~~~~~~--~p~~gl~~d~~g~-L~v~~~~-~gl~~~~~-~g--~~~~  127 (355)
                      ++++. .++.+|+. ..++.|+.+|..+++.........  .|. +++++++|+ +|++... +.++.++. ++  ...+
T Consensus         4 g~~~~-~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~-~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~   81 (349)
T 1jmx_B            4 GPALK-AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPG-TAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA   81 (349)
T ss_dssp             CCCCC-TTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSC-EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             ccccc-CCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCc-eeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEE
Confidence            34455 56667764 568999999998887654444344  688 999999997 7888754 34778884 56  3333


Q ss_pred             cCC------cCCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEE---EeeccccccccEEE
Q 018474          128 VPD------ASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT---VLHEGFYFANGIAL  197 (355)
Q Consensus       128 ~~~------~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~---~~~~~~~~pngi~~  197 (355)
                      ...      ...++++++++|| .+|+++.........  +.    ...+.++.||.++++..   ........+.++++
T Consensus        82 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~--~~----~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  155 (349)
T 1jmx_B           82 NLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDH--YV----VKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRA  155 (349)
T ss_dssp             ESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSC--EE----ECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEE
T ss_pred             EcccccccccccccceEECCCCCEEEEEcccccccccc--cc----cCCCeEEEEECCCccccceeeeccCCCcccceeE
Confidence            321      1348999999999 577765220000000  00    01357889998764321   11222335778889


Q ss_pred             eCCCCEEEEEeCCCCeEEEEEeCC
Q 018474          198 SKNEDFVVVCESWKFRCRRYWLKG  221 (355)
Q Consensus       198 ~~dg~~l~v~~~~~~~i~~~~~~~  221 (355)
                      +|||+ +|++.   +.|++++++.
T Consensus       156 s~dg~-l~~~~---~~i~~~d~~~  175 (349)
T 1jmx_B          156 ADDGS-LYVAG---PDIYKMDVKT  175 (349)
T ss_dssp             CTTSC-EEEES---SSEEEECTTT
T ss_pred             CCCCc-EEEcc---CcEEEEeCCC
Confidence            99999 88853   3488888754

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.12  E-value=1.7e-08  Score=87.07  Aligned_cols=152  Identities=16%  Similarity=0.056  Sum_probs=107.2

Q ss_pred             ecCCCCCCCceEEEeeCCCeEEEEec-CCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEcC-CC
Q 018474           46 LGEGCVNHPEDVSVVVSKGALYTATR-DGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE-EG  123 (355)
Q Consensus        46 ~~~~~~~~p~~i~~d~~~g~l~~~~~-~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~-~g  123 (355)
                      +..+.-.-+|+++.+  ++.||+.+. ++.++.+|+++.+...-...++.+. |++.| .++||+++....|..+|+ +.
T Consensus        59 ~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gw-glt~d-g~~L~vSdgs~~l~~iDp~t~  134 (243)
T 3mbr_X           59 AEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEGW-ALTSD-DSHLYMSDGTAVIRKLDPDTL  134 (243)
T ss_dssp             EECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEEEEECSSCCC-EEEEC-SSCEEEECSSSEEEEECTTTC
T ss_pred             EeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCce-EEeeC-CCEEEEECCCCeEEEEeCCCC
Confidence            333333456888887  688998874 7899999998887654333445567 78776 468999997667888885 44


Q ss_pred             --eEEEcCC-----cCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeec---------
Q 018474          124 --VEAIVPD-----ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE---------  187 (355)
Q Consensus       124 --~~~~~~~-----~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~---------  187 (355)
                        ...+...     ..++|.+... +|.||+....                 +..|.++||+++++.....         
T Consensus       135 ~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~-----------------s~~I~vIDp~tG~V~~~idl~~l~~~~~  196 (243)
T 3mbr_X          135 QQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWL-----------------TSRIARIDPASGKVVAWIDLQALVPDAD  196 (243)
T ss_dssp             CEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT-----------------TTEEEEECTTTCBEEEEEECGGGSTTTT
T ss_pred             eEEEEEEEccCCcccccceeeEEe-CCEEEEEECC-----------------CCeEEEEECCCCCEEEEEECCcCccccc
Confidence              3333221     1567777655 7899988754                 4589999999998764432         


Q ss_pred             -----cccccccEEEeCCCCEEEEEeCCCCeEEEEEe
Q 018474          188 -----GFYFANGIALSKNEDFVVVCESWKFRCRRYWL  219 (355)
Q Consensus       188 -----~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~  219 (355)
                           ....+||||++|+++.+|++.-.=..++.+.+
T Consensus       197 ~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~~v~~  233 (243)
T 3mbr_X          197 ALTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLYEIRL  233 (243)
T ss_dssp             SCCCTTSSCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred             cccCCcCCceEEEEEcCCCCEEEEECCCCCcEEEEEE
Confidence                 12367999999999999999754445655554

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=99.11  E-value=1.1e-07  Score=87.51  Aligned_cols=232  Identities=10%  Similarity=-0.010  Sum_probs=151.6

Q ss_pred             ceEecCCCCCCCceEEEeeCCCeEEEEecC---C---EEEEEEcC--------CCee-EEeec--cCC---CcccCeEEC
Q 018474           43 LTKLGEGCVNHPEDVSVVVSKGALYTATRD---G---WVKYFILH--------NETL-VNWKH--IDS---QSLLGLTTT  102 (355)
Q Consensus        43 ~~~~~~~~~~~p~~i~~d~~~g~l~~~~~~---g---~i~~~~~~--------~g~~-~~~~~--~~~---~p~~gl~~d  102 (355)
                      .+.++.  -.-|.++++|..++++|++...   |   .+..++..        ++++ +.|..  .+.   .++ ++.+|
T Consensus        19 g~y~p~--n~~P~gv~vd~~~gRiFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~p~ll~PYP~w~~~~~lvsV~-~v~iD   95 (381)
T 3q6k_A           19 GSYNPD--NMISTAFAYDAEGEKLFLAVPRKLPRVPYTLAEVDTKNSLGVKGKHSPLLNKFSGHKTGKELTSIY-QPVID   95 (381)
T ss_dssp             TSSCGG--GCCCCEEEEETTTTEEEEECCTTSTTCSCSEEEEEHHHHTTCTTCSSCCBEECTTCSSSCSSSCEE-EEEEC
T ss_pred             CCcccC--ccceeeeeeecCCCcEEEEeCCCCCCCCcEEEEEeCCCCcccccCCcccccCCCCCccccceEEee-EEEEc
Confidence            344444  3568899994257889998753   2   45566542        3355 66643  122   367 88999


Q ss_pred             CCCCEEEEeCC-------------C---cEEEEc-C-C--C-eEEEcCC--c----CCcccEEEc-c-------CCcEEE
Q 018474          103 KDGGVILCDNE-------------K---GLLKVT-E-E--G-VEAIVPD--A----SFTNDVIAA-S-------DGTLYF  147 (355)
Q Consensus       103 ~~g~L~v~~~~-------------~---gl~~~~-~-~--g-~~~~~~~--~----~~~~~l~~d-~-------dG~ly~  147 (355)
                      +.|+|||.|.+             .   .|+.+| . +  . ++++.-+  .    .+.+++++| .       ++.+|+
T Consensus        96 ~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYI  175 (381)
T 3q6k_A           96 DCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYI  175 (381)
T ss_dssp             TTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEE
T ss_pred             CCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEE
Confidence            99999999865             1   277888 4 5  5 5554322  1    678999999 2       457999


Q ss_pred             EeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecc-------------------ccccccEEEeCC----CCEE
Q 018474          148 TVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG-------------------FYFANGIALSKN----EDFV  204 (355)
Q Consensus       148 ~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~-------------------~~~pngi~~~~d----g~~l  204 (355)
                      +|+.                 ..+|.+||.++++...+.+.                   ....+||+++|+    ++.|
T Consensus       176 tD~~-----------------~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~L  238 (381)
T 3q6k_A          176 TNFL-----------------RGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPA  238 (381)
T ss_dssp             EETT-----------------TTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEE
T ss_pred             EcCC-----------------CCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEE
Confidence            9976                 45788888777654433311                   014578999998    8999


Q ss_pred             EEEeCCCCeEEEEEe---CCCC-CcceeEecccCCCCcC--ceEEC-CCCCEEEEeecCCchhhHhhhcchhHHHHHHhc
Q 018474          205 VVCESWKFRCRRYWL---KGDR-AGILDAFIENLPGGPD--NINLA-PDGSFWIGLIKMNQTGVRAIQKCREKWELLDAY  277 (355)
Q Consensus       205 ~v~~~~~~~i~~~~~---~~~~-~~~~~~~~~~~~g~p~--~i~~d-~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (355)
                      |++-....+++++..   .... ...++.+.+ .+...+  +++.| ++|++|++....                     
T Consensus       239 Yf~plss~~ly~V~T~~L~~~~~~~~v~~~G~-kg~~s~~~~~~~D~~~G~ly~~~~~~---------------------  296 (381)
T 3q6k_A          239 YYLAGSAIKVYSVNTKELKQKGGKLNPELLGN-RGKYNDAIALAYDPKTKVIFFAEANT---------------------  296 (381)
T ss_dssp             EEEESSCSEEEEEEHHHHSSTTCCCCCEEEEE-CCTTCCEEEEEECTTTCEEEEEESSS---------------------
T ss_pred             EEEECCCCcEEEEEHHHhhCcchhhceEEeee-cCCCCCcceEEEeCCCCeEEEEeccC---------------------
Confidence            999988778988873   2222 233333332 221234  45676 789999998652                     


Q ss_pred             cchhhcccCCCCCCceEEEEEeCCCC------eEEEEEECCCCCcccceeEEEEe-CCEEEEeec
Q 018474          278 PGLISLLLPMGSDAGARVVKVDGNDG------KIIRDFNDPDATYISFVTSAAEF-DGNLYLASL  335 (355)
Q Consensus       278 ~~~~~~~~~~~~~~~~~v~~~~~~~g------~~~~~~~~~~g~~~~~~~~~~~~-~g~L~v~~~  335 (355)
                                     .+|.+.++ ++      .....++++ .  ...+..+..+ +|+||+.+.
T Consensus       297 ---------------~aI~~w~~-~~~~~~~~n~~~l~~d~-~--l~~pd~~~i~~~g~Lwv~sn  342 (381)
T 3q6k_A          297 ---------------KQVSCWNT-QKMPLRMKNTDVVYTSS-R--FVFGTDISVDSKGGLWFMSN  342 (381)
T ss_dssp             ---------------SEEEEEET-TSCSBCGGGEEEEEECT-T--CCSEEEEEECTTSCEEEEEC
T ss_pred             ---------------CeEEEEeC-CCCccccCceEEEEECC-C--ccccCeEEECCCCeEEEEEC
Confidence                           47999999 66      335556676 3  4467777764 699999874

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.11  E-value=1.3e-08  Score=88.77  Aligned_cols=145  Identities=16%  Similarity=0.123  Sum_probs=103.4

Q ss_pred             CCCceEEEeeCCCeEEEEec-CCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEcC-CC--eEEE
Q 018474           52 NHPEDVSVVVSKGALYTATR-DGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE-EG--VEAI  127 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~-~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~-~g--~~~~  127 (355)
                      .-.|+++.+  ++.||+.+. ++.++.+|+++.+...-....+... |++.| .++||+++....+..+|+ +.  ...+
T Consensus        96 ~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGw-GLt~D-g~~L~vSdGs~~l~~iDp~T~~v~~~I  171 (268)
T 3nok_A           96 IFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEGW-GLCYW-NGKLVRSDGGTMLTFHEPDGFALVGAV  171 (268)
T ss_dssp             CCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEEEEECSSCCC-CEEEE-TTEEEEECSSSEEEEECTTTCCEEEEE
T ss_pred             cceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEEEEeCCCcee-EEecC-CCEEEEECCCCEEEEEcCCCCeEEEEE
Confidence            345788886  678998874 6889999998887654333445567 88887 468999986566888885 44  3333


Q ss_pred             cC--C---cCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecc--------------
Q 018474          128 VP--D---ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG--------------  188 (355)
Q Consensus       128 ~~--~---~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~--------------  188 (355)
                      .-  .   ..++|.+... +|.||+....                 ...|.++||+++++.....-              
T Consensus       172 ~V~~~g~~v~~lNeLe~~-dG~lyanvw~-----------------s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~  233 (268)
T 3nok_A          172 QVKLRGQPVELINELECA-NGVIYANIWH-----------------SSDVLEIDPATGTVVGVIDASALTRAVAGQVTNP  233 (268)
T ss_dssp             ECEETTEECCCEEEEEEE-TTEEEEEETT-----------------CSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCT
T ss_pred             EeCCCCcccccccccEEe-CCEEEEEECC-----------------CCeEEEEeCCCCcEEEEEECCCCcccccccccCc
Confidence            22  1   1577888766 8899998754                 45899999999987644321              


Q ss_pred             ccccccEEEeCCCCEEEEEeCCCCeEEEEE
Q 018474          189 FYFANGIALSKNEDFVVVCESWKFRCRRYW  218 (355)
Q Consensus       189 ~~~pngi~~~~dg~~l~v~~~~~~~i~~~~  218 (355)
                      ...+||||++|+++.+|++.-.=..++.+.
T Consensus       234 ~~vlNGIA~dp~~~rlfVTGK~Wp~~~ev~  263 (268)
T 3nok_A          234 EAVLNGIAVEPGSGRIFMTGKLWPRLFEVR  263 (268)
T ss_dssp             TCCEEEEEECTTTCCEEEEETTCSEEEEEE
T ss_pred             CCceEEEEEcCCCCEEEEeCCCCCceEEEE
Confidence            136899999999999999875434455443

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.10  E-value=4.2e-08  Score=95.93  Aligned_cols=245  Identities=15%  Similarity=0.122  Sum_probs=152.5

Q ss_pred             EecCCCCCCCceEEEeeCCCeEEEEecCCEEEEEEcC--CCeeEEeeccCCCcccCeEEC----CCCC-EEEEeCC-CcE
Q 018474           45 KLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILH--NETLVNWKHIDSQSLLGLTTT----KDGG-VILCDNE-KGL  116 (355)
Q Consensus        45 ~~~~~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~--~g~~~~~~~~~~~p~~gl~~d----~~g~-L~v~~~~-~gl  116 (355)
                      ++..|  ..|++++++++++.+|+++.++.|..+|..  +++...-...+..|. +++++    ++|+ +|+++.. +.+
T Consensus       192 ~i~~g--~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~-~ia~s~~~~pDGk~l~v~n~~~~~v  268 (567)
T 1qks_A          192 VLDTG--YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEAR-SIETSKMEGWEDKYAIAGAYWPPQY  268 (567)
T ss_dssp             EEECS--SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEE-EEEECCSTTCTTTEEEEEEEETTEE
T ss_pred             EEeCC--CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCc-eeEEccccCCCCCEEEEEEccCCeE
Confidence            44544  578999999888899999999999999985  555443334566799 99999    5885 8888755 446


Q ss_pred             EEEc-CCC--eEEEcCCc-----------CCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCe
Q 018474          117 LKVT-EEG--VEAIVPDA-----------SFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE  181 (355)
Q Consensus       117 ~~~~-~~g--~~~~~~~~-----------~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~  181 (355)
                      ..+| .+.  ++.+....           ..+.+++.++++. ++++...                 .|.++.+|..+.+
T Consensus       269 ~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~-----------------~g~v~~vd~~~~~  331 (567)
T 1qks_A          269 VIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE-----------------TGKILLVDYTDLN  331 (567)
T ss_dssp             EEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT-----------------TTEEEEEETTCSS
T ss_pred             EEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecC-----------------CCeEEEEecCCCc
Confidence            6667 344  44443211           1345666777664 4443322                 5678888875543


Q ss_pred             EEEe--eccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEec-ccCCCCc-CceE-ECCC-CCEEEEeec
Q 018474          182 TTVL--HEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFI-ENLPGGP-DNIN-LAPD-GSFWIGLIK  255 (355)
Q Consensus       182 ~~~~--~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~g~p-~~i~-~d~~-G~lwv~~~~  255 (355)
                      ....  .....++.++.+++||+++|++....+.|.++|.+..+.... .-. ...| .| .+.. ++++ |.+|++...
T Consensus       332 ~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~-i~vgg~~P-hpg~g~~~~~p~~g~v~~t~~~  409 (567)
T 1qks_A          332 NLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAI-EDTGGQTP-HPGRGANFVHPTFGPVWATSHM  409 (567)
T ss_dssp             EEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEE-EECSSSSB-CCTTCEEEEETTTEEEEEEEBS
T ss_pred             cceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEE-EeccCcCC-CCccceeeECCCCCcEEEeCCC
Confidence            2111  123356788999999999999998899999999864322111 111 1111 12 3543 4665 679987653


Q ss_pred             CCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCC-------CeEEEEEECCCCCcccceeEEEEeCC
Q 018474          256 MNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGND-------GKIIRDFNDPDATYISFVTSAAEFDG  328 (355)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------g~~~~~~~~~~g~~~~~~~~~~~~~g  328 (355)
                      +                                   .+.|..++...       -+.+..+....+.  ........++.
T Consensus       410 g-----------------------------------~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g--~~~i~~~p~~~  452 (567)
T 1qks_A          410 G-----------------------------------DDSVALIGTDPEGHPDNAWKILDSFPALGGG--SLFIKTHPNSQ  452 (567)
T ss_dssp             S-----------------------------------SSEEEEEECCTTTCTTTBTSEEEEEECSCSC--CCCEECCTTCS
T ss_pred             C-----------------------------------CCeEEEecCCCCCCccccCEEEEEEecCCCC--CEEEEeCCCCC
Confidence            2                                   12477776522       3566777653221  11111223457


Q ss_pred             EEEEeecC------CCeEEEeeCCCC
Q 018474          329 NLYLASLQ------SNFIGILPLDGP  348 (355)
Q Consensus       329 ~L~v~~~~------~~~i~~~~~~~~  348 (355)
                      +||+.+..      ++.|+++++.+.
T Consensus       453 ~l~v~~~~~~~~~~~~~v~v~d~~~~  478 (567)
T 1qks_A          453 YLYVDATLNPEAEISGSVAVFDIKAM  478 (567)
T ss_dssp             EEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred             eEEEecCCCCCcccCceEEEEECCcc
Confidence            89998843      359999998765

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.10  E-value=1.2e-07  Score=92.35  Aligned_cols=234  Identities=15%  Similarity=0.188  Sum_probs=147.9

Q ss_pred             CCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEE-cCCC--eE
Q 018474           49 GCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKV-TEEG--VE  125 (355)
Q Consensus        49 ~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~-~~~g--~~  125 (355)
                      +.-....++++.+++..+.++..+|.|..++....+...+......+. ++++.++|+..++....+.+++ +.++  +.
T Consensus       301 ~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~-~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~  379 (577)
T 2ymu_A          301 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVW-GVAFSPDGQTIASASDDKTVKLWNRNGQLLQ  379 (577)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEEETTCCEEE
T ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEE-EEEECCCCCEEEEEeCCCEEEEEcCCCCEEE
Confidence            333455678888667778888889999999986666555443344567 8999999987665545565544 5555  55


Q ss_pred             EEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEE
Q 018474          126 AIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVV  205 (355)
Q Consensus       126 ~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~  205 (355)
                      .+......+.+++++++|+..++.+.                 .+.+..||........+.........++++||++.+.
T Consensus       380 ~~~~~~~~v~~~~~s~dg~~l~~~~~-----------------d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~  442 (577)
T 2ymu_A          380 TLTGHSSSVRGVAFSPDGQTIASASD-----------------DKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIA  442 (577)
T ss_dssp             EEECCSSCEEEEEECTTSSCEEEEET-----------------TSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             EecCCCCCeEEEEECCCCCEEEEEeC-----------------CCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEE
Confidence            55444467889999999976655322                 4567788865544444443334456789999999665


Q ss_pred             EEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhccc
Q 018474          206 VCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLL  285 (355)
Q Consensus       206 v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (355)
                      .+ ...+.|..|+.++.   ....+. ........++++++|++.++....                             
T Consensus       443 ~~-~~d~~v~~w~~~~~---~~~~~~-~~~~~v~~~~~spd~~~las~~~d-----------------------------  488 (577)
T 2ymu_A          443 SA-SDDKTVKLWNRNGQ---LLQTLT-GHSSSVRGVAFSPDGQTIASASDD-----------------------------  488 (577)
T ss_dssp             EE-ETTSEEEEEETTSC---EEEEEE-CCSSCEEEEEECTTSCEEEEEETT-----------------------------
T ss_pred             EE-cCCCEEEEEECCCC---EEEEEc-CCCCCEEEEEEcCCCCEEEEEeCC-----------------------------
Confidence            55 45678888886542   222222 223334567899999887766442                             


Q ss_pred             CCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEe-CCEEEEeecCCCeEEEeeCC
Q 018474          286 PMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-DGNLYLASLQSNFIGILPLD  346 (355)
Q Consensus       286 ~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~~~  346 (355)
                             +.|..++. +|+....+..+.+    .++.+... ++++.++......|..++++
T Consensus       489 -------~~i~iw~~-~~~~~~~~~~h~~----~v~~l~~s~dg~~l~s~~~dg~v~lwd~~  538 (577)
T 2ymu_A          489 -------KTVKLWNR-NGQLLQTLTGHSS----SVRGVAFSPDGQTIASASDDKTVKLWNRN  538 (577)
T ss_dssp             -------SEEEEEET-TSCEEEEEECCSS----CEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred             -------CEEEEEcC-CCCEEEEEeCCCC----CEEEEEEcCCCCEEEEEECcCEEEEEeCC
Confidence                   34666787 8887777766544    34455544 24444433335556666643

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=99.08  E-value=3.8e-09  Score=100.55  Aligned_cols=189  Identities=13%  Similarity=0.185  Sum_probs=113.7

Q ss_pred             eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeec---------ccccccc
Q 018474          124 VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE---------GFYFANG  194 (355)
Q Consensus       124 ~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~---------~~~~png  194 (355)
                      +++++.....|.+|+++++|+|||++..                 .++|+++++.+++.+.+..         +...+.|
T Consensus        19 ~~~~a~~l~~P~~~a~~pdG~l~V~e~~-----------------gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllg   81 (454)
T 1cru_A           19 KKVILSNLNKPHALLWGPDNQIWLTERA-----------------TGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLG   81 (454)
T ss_dssp             EEEEECCCSSEEEEEECTTSCEEEEETT-----------------TCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEE
T ss_pred             EEEEECCCCCceEEEEcCCCcEEEEEcC-----------------CCEEEEEECCCCcEeEEecCCccccccCCCCceeE
Confidence            5666666678999999999999999754                 3479999876666654431         1233459


Q ss_pred             EEEeCC---CCEEEEEeCC------------CCeEEEEEeCCC--CCcceeEecccCC----CCcCceEECCCCCEEEEe
Q 018474          195 IALSKN---EDFVVVCESW------------KFRCRRYWLKGD--RAGILDAFIENLP----GGPDNINLAPDGSFWIGL  253 (355)
Q Consensus       195 i~~~~d---g~~l~v~~~~------------~~~i~~~~~~~~--~~~~~~~~~~~~~----g~p~~i~~d~~G~lwv~~  253 (355)
                      |+++||   +..||++.+.            ..+|.|++.+..  .....+.+.+..+    -.+.+|++++||+|||+.
T Consensus        82 ia~~Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~  161 (454)
T 1cru_A           82 FAFHPDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTI  161 (454)
T ss_dssp             EEECTTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEE
T ss_pred             EEECCCcCcCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEE
Confidence            999997   7789999864            358999998542  2333344443232    136779999999999998


Q ss_pred             ecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCe-----------EEEEEECCCCCcccceeE
Q 018474          254 IKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGK-----------IIRDFNDPDATYISFVTS  322 (355)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~-----------~~~~~~~~~g~~~~~~~~  322 (355)
                      ....+...+.. ..+.-   --+.|.......+-.....+.|+|+++ +|+           ..+.|..  |  +.++..
T Consensus       162 Gd~~~~~~~~~-~~~~~---~~~~p~~~~~~aq~~~~~~G~IlRi~~-dG~ip~~Npf~~~~~~ei~a~--G--~RNp~g  232 (454)
T 1cru_A          162 GDQGRNQLAYL-FLPNQ---AQHTPTQQELNGKDYHTYMGKVLRLNL-DGSIPKDNPSFNGVVSHIYTL--G--HRNPQG  232 (454)
T ss_dssp             CCTTTTSGGGT-TSCCC---TTCCCCHHHHHTTCCTTCSSEEEEECT-TSCCCTTCCEETTEECSEEEB--C--CSEEEE
T ss_pred             CCCCCCCcccc-ccccc---cccccccccccccCCCCCCeeEEEEeC-CCCCCCCCCCCCCCcceEEEE--C--CCCcce
Confidence            65432110000 00000   000000000000000123478999999 887           3455544  3  235666


Q ss_pred             EEEe-CCEEEEeecCCC
Q 018474          323 AAEF-DGNLYLASLQSN  338 (355)
Q Consensus       323 ~~~~-~g~L~v~~~~~~  338 (355)
                      ++.+ .|+||++....+
T Consensus       233 la~dp~G~L~~~d~g~~  249 (454)
T 1cru_A          233 LAFTPNGKLLQSEQGPN  249 (454)
T ss_dssp             EEECTTSCEEEEEECSS
T ss_pred             EEECCCCCEEEEecCCC
Confidence            7766 489999987543

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=99.07  E-value=2.5e-09  Score=101.83  Aligned_cols=166  Identities=9%  Similarity=0.132  Sum_probs=112.2

Q ss_pred             ceEecCCCCCCCceEEEeeCCCeEEEEecCC-EEEEEEcCCCeeEEeecc---------CCCcccCeEECC----CCCEE
Q 018474           43 LTKLGEGCVNHPEDVSVVVSKGALYTATRDG-WVKYFILHNETLVNWKHI---------DSQSLLGLTTTK----DGGVI  108 (355)
Q Consensus        43 ~~~~~~~~~~~p~~i~~d~~~g~l~~~~~~g-~i~~~~~~~g~~~~~~~~---------~~~p~~gl~~d~----~g~L~  108 (355)
                      .+.+..+ +..|.+|+++ .+|.+|++...+ +|+++++.+|+...+...         .+.+. ||++++    ++.||
T Consensus        19 ~~~~a~~-l~~P~~~a~~-pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gll-gia~~Pdf~~~g~lY   95 (454)
T 1cru_A           19 KKVILSN-LNKPHALLWG-PDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLL-GFAFHPDFKNNPYIY   95 (454)
T ss_dssp             EEEEECC-CSSEEEEEEC-TTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEE-EEEECTTTTTSCEEE
T ss_pred             EEEEECC-CCCceEEEEc-CCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCcee-EEEECCCcCcCCEEE
Confidence            3556655 7899999999 677899998875 799998866766544321         23467 899998    78899


Q ss_pred             EEeCC-------------CcEEEEc-C--CC-e---EEEcC----C-cCCcccEEEccCCcEEEEeCCCCCCC-ccccc-
Q 018474          109 LCDNE-------------KGLLKVT-E--EG-V---EAIVP----D-ASFTNDVIAASDGTLYFTVASTKYTP-TDFYK-  161 (355)
Q Consensus       109 v~~~~-------------~gl~~~~-~--~g-~---~~~~~----~-~~~~~~l~~d~dG~ly~~d~~~~~~~-~~~~~-  161 (355)
                      |+...             ..|+++. .  ++ +   +.+..    . ..++++|++++||.||++........ ..... 
T Consensus        96 v~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~  175 (454)
T 1cru_A           96 ISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLP  175 (454)
T ss_dssp             EEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTSC
T ss_pred             EEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCCCCCCccccccc
Confidence            98742             3577776 2  22 2   22221    1 15688999999999999865321100 00000 


Q ss_pred             -------------cccccCCCCeEEEEeCCCC-----------eEEEeeccccccccEEEeCCCCEEEEEeCCCC
Q 018474          162 -------------DMAEGKPYGQLRKYDPKLK-----------ETTVLHEGFYFANGIALSKNEDFVVVCESWKF  212 (355)
Q Consensus       162 -------------~~~~~~~~g~l~~~dp~~~-----------~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~  212 (355)
                                   .--.....|.|+|+++++.           ..+.+..++.+|.|++++++|+ ||+++.+..
T Consensus       176 ~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~RNp~gla~dp~G~-L~~~d~g~~  249 (454)
T 1cru_A          176 NQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGK-LLQSEQGPN  249 (454)
T ss_dssp             CCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECTTSC-EEEEEECSS
T ss_pred             cccccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECCCCcceEEECCCCC-EEEEecCCC
Confidence                         0000123689999999765           4566778899999999999877 999997644

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.07  E-value=9.9e-08  Score=89.72  Aligned_cols=208  Identities=14%  Similarity=0.080  Sum_probs=137.5

Q ss_pred             CCCceEEEeeCCCeEEEEecCC---EEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCC---CcEEEEcC-CC
Q 018474           52 NHPEDVSVVVSKGALYTATRDG---WVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNE---KGLLKVTE-EG  123 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~~g---~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~---~gl~~~~~-~g  123 (355)
                      ....++++.|++..++.++.++   .|+.+|..+++...+........ .+++.++|+ |+++...   ..|+.++. ++
T Consensus       179 ~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~-~~~~spdg~~la~~~~~~g~~~i~~~d~~~~  257 (415)
T 2hqs_A          179 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNG-APAFSPDGSKLAFALSKTGSLNLYVMDLASG  257 (415)
T ss_dssp             SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEE-EEEECTTSSEEEEEECTTSSCEEEEEETTTC
T ss_pred             CcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCccc-CEEEcCCCCEEEEEEecCCCceEEEEECCCC
Confidence            3466788987777777776653   89999998888776654445566 889999998 5544432   23888884 66


Q ss_pred             -eEEEcCCcCCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCC
Q 018474          124 -VEAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNE  201 (355)
Q Consensus       124 -~~~~~~~~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg  201 (355)
                       .+.+......+.+++++|||+ |+++...               .....++.+|.++++.+.+.........++++|||
T Consensus       258 ~~~~l~~~~~~~~~~~~spdg~~l~~~s~~---------------~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG  322 (415)
T 2hqs_A          258 QIRQVTDGRSNNTEPTWFPDSQNLAFTSDQ---------------AGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDG  322 (415)
T ss_dssp             CEEECCCCSSCEEEEEECTTSSEEEEEECT---------------TSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTS
T ss_pred             CEEeCcCCCCcccceEECCCCCEEEEEECC---------------CCCcEEEEEECCCCCEEEEecCCCcccCeEECCCC
Confidence             655554445677889999996 6665432               11237999999888765544333445578999999


Q ss_pred             CEEEEEeCC--CCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccc
Q 018474          202 DFVVVCESW--KFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPG  279 (355)
Q Consensus       202 ~~l~v~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (355)
                      +.++++...  ...|+.+++++..   ...+...  .....+.++++|+..+.....                       
T Consensus       323 ~~l~~~~~~~g~~~i~~~d~~~~~---~~~l~~~--~~~~~~~~spdg~~l~~~s~~-----------------------  374 (415)
T 2hqs_A          323 KFMVMVSSNGGQQHIAKQDLATGG---VQVLSST--FLDETPSLAPNGTMVIYSSSQ-----------------------  374 (415)
T ss_dssp             SEEEEEEECSSCEEEEEEETTTCC---EEECCCS--SSCEEEEECTTSSEEEEEEEE-----------------------
T ss_pred             CEEEEEECcCCceEEEEEECCCCC---EEEecCC--CCcCCeEEcCCCCEEEEEEcC-----------------------
Confidence            988887654  3578889886532   2222211  134567889999854433321                       


Q ss_pred             hhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCC
Q 018474          280 LISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDA  314 (355)
Q Consensus       280 ~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g  314 (355)
                                .....|+.+|. +|+....+..+.|
T Consensus       375 ----------~~~~~l~~~d~-~g~~~~~l~~~~~  398 (415)
T 2hqs_A          375 ----------GMGSVLNLVST-DGRFKARLPATDG  398 (415)
T ss_dssp             ----------TTEEEEEEEET-TSCCEEECCCSSS
T ss_pred             ----------CCccEEEEEEC-CCCcEEEeeCCCC
Confidence                      11236888998 7877777766555

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.06  E-value=7.4e-07  Score=82.60  Aligned_cols=246  Identities=12%  Similarity=0.056  Sum_probs=143.8

Q ss_pred             EecCCCCCCCceEEEeeCCCeEEEEec----------CCEEEEEEcCCCeeEEeecc--------CCCcccCeEECCCCC
Q 018474           45 KLGEGCVNHPEDVSVVVSKGALYTATR----------DGWVKYFILHNETLVNWKHI--------DSQSLLGLTTTKDGG  106 (355)
Q Consensus        45 ~~~~~~~~~p~~i~~d~~~g~l~~~~~----------~g~i~~~~~~~g~~~~~~~~--------~~~p~~gl~~d~~g~  106 (355)
                      .++.|  ..| .+++.|+++.+|++..          ++.|..+|..+.+.......        +..|. +++++++|+
T Consensus        62 ~i~~g--~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~-~~~~spDG~  137 (373)
T 2mad_H           62 HVNGG--FLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSW-MNANTPNNA  137 (373)
T ss_pred             EecCC--CCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCcc-ceEECCCCC
Confidence            45555  568 9999988899999863          46788999977665433222        24588 999999986


Q ss_pred             -EEEEeCC--CcEEEEcCCC--eEE-EcCCcCCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCC
Q 018474          107 -VILCDNE--KGLLKVTEEG--VEA-IVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKL  179 (355)
Q Consensus       107 -L~v~~~~--~gl~~~~~~g--~~~-~~~~~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~  179 (355)
                       ||++...  +.+..+|.++  +.. +.    .+..+.+.++| +.|++...                 .|.+..+|. +
T Consensus       138 ~l~v~n~~~~~~v~viD~t~~~~~~~i~----~~~~~~~~~~~~~~~~~~~~-----------------dg~~~~vd~-~  195 (373)
T 2mad_H          138 DLLFFQFAAGPAVGLVVQGGSSDDQLLS----SPTCYHIHPGAPSTFYLLCA-----------------QGGLAKTDH-A  195 (373)
T ss_pred             EEEEEecCCCCeEEEEECCCCEEeEEcC----CCceEEEEeCCCceEEEEcC-----------------CCCEEEEEC-C
Confidence             8888743  4577888223  333 22    22234444554 56665433                 456777777 5


Q ss_pred             CeEEEeec-----ccccc--ccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEe--cc----cCCCCcCc---eEE
Q 018474          180 KETTVLHE-----GFYFA--NGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAF--IE----NLPGGPDN---INL  243 (355)
Q Consensus       180 ~~~~~~~~-----~~~~p--ngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~--~~----~~~g~p~~---i~~  243 (355)
                      ++......     ....|  ....+.+++..+|+.. ..+.++.++..+........+  ..    .....|.+   +.+
T Consensus       196 g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~  274 (373)
T 2mad_H          196 GGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV-YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAY  274 (373)
T ss_pred             CcEEEEEeccccccCCcceeecceeEecCCEEEEEc-CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEE
Confidence            54431111     00111  1234566666566655 456888888754321111111  00    01113566   678


Q ss_pred             CCCC-CEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeE
Q 018474          244 APDG-SFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTS  322 (355)
Q Consensus       244 d~~G-~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~  322 (355)
                      +++| ++||+........                           .....+.|..+|.++++.+..+....     .+..
T Consensus       275 s~d~~~lyV~~~~~~~~~---------------------------~~~~~~~V~VID~~t~~vv~~i~~g~-----~p~~  322 (373)
T 2mad_H          275 LKSSDGIYLLTSEQSAWK---------------------------LHAAAKEVTSVTGLVGQTSSQISLGH-----DVDA  322 (373)
T ss_pred             CCCCCEEEEEeccCCccc---------------------------ccCCCCeEEEEECCCCEEEEEEECCC-----CcCe
Confidence            8887 5899875310000                           00112469999997788888886533     1233


Q ss_pred             EE--EeCC-EEEEeecCCCeEEEeeCCCCC
Q 018474          323 AA--EFDG-NLYLASLQSNFIGILPLDGPE  349 (355)
Q Consensus       323 ~~--~~~g-~L~v~~~~~~~i~~~~~~~~~  349 (355)
                      +.  .++. .||+++..++.|.++++.+-.
T Consensus       323 i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~  352 (373)
T 2mad_H          323 ISVAQDGGPDLYALSAGTEVLHIYDAGAGD  352 (373)
T ss_pred             EEECCCCCeEEEEEcCCCCeEEEEECCCCC
Confidence            33  3345 577777789999999987644

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.05  E-value=1.9e-07  Score=90.88  Aligned_cols=219  Identities=14%  Similarity=0.150  Sum_probs=141.5

Q ss_pred             CCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCCc-EEEEcCCC--eEEE
Q 018474           51 VNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKG-LLKVTEEG--VEAI  127 (355)
Q Consensus        51 ~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~g-l~~~~~~g--~~~~  127 (355)
                      -....++++.+++..+.++..+|.|..++........+......+. ++++.++|+.+++...++ +..++.++  ++.+
T Consensus       344 ~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~-~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~  422 (577)
T 2ymu_A          344 SSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVR-GVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL  422 (577)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEE-EEEECTTSSCEEEEETTSEEEEECTTCCEEEEE
T ss_pred             CCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeE-EEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEe
Confidence            3455678888777778888889999888863333333333344567 899999998655544445 44555555  5555


Q ss_pred             cCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEE
Q 018474          128 VPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVC  207 (355)
Q Consensus       128 ~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~  207 (355)
                      ......+.++++++|++..++.+.                 .+.+..||..+.....+.........++++||++.+..+
T Consensus       423 ~~~~~~v~~~~~s~d~~~l~~~~~-----------------d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~  485 (577)
T 2ymu_A          423 TGHSSSVWGVAFSPDDQTIASASD-----------------DKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASA  485 (577)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEET-----------------TSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEE
T ss_pred             cCCCCCeEEEEECCCCCEEEEEcC-----------------CCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence            544467888999999977665433                 456888887655555544333445789999999965544


Q ss_pred             eCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCC
Q 018474          208 ESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPM  287 (355)
Q Consensus       208 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (355)
                       ...+.|..|+.++.   ..+.+. ........++++++|++.++....                               
T Consensus       486 -~~d~~i~iw~~~~~---~~~~~~-~h~~~v~~l~~s~dg~~l~s~~~d-------------------------------  529 (577)
T 2ymu_A          486 -SDDKTVKLWNRNGQ---LLQTLT-GHSSSVRGVAFSPDGQTIASASDD-------------------------------  529 (577)
T ss_dssp             -ETTSEEEEEETTSC---EEEEEE-CCSSCEEEEEECTTSSCEEEEETT-------------------------------
T ss_pred             -eCCCEEEEEcCCCC---EEEEEe-CCCCCEEEEEEcCCCCEEEEEECc-------------------------------
Confidence             45677888886542   222222 223334567899999877665431                               


Q ss_pred             CCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEe-CCEEEEe
Q 018474          288 GSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-DGNLYLA  333 (355)
Q Consensus       288 ~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~v~  333 (355)
                           +.|..+|. +|+.+..+..+.+    .++.+... +|+..++
T Consensus       530 -----g~v~lwd~-~~~~~~~~~~h~~----~v~~~~fs~dg~~l~s  566 (577)
T 2ymu_A          530 -----KTVKLWNR-NGQLLQTLTGHSS----SVWGVAFSPDGQTIAS  566 (577)
T ss_dssp             -----SEEEEECT-TSCEEEEEECCSS----CEEEEEECTTSSCEEE
T ss_pred             -----CEEEEEeC-CCCEEEEEcCCCC----CEEEEEEcCCCCEEEE
Confidence                 45777788 8988888877654    45556654 3444443

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.04  E-value=8.8e-08  Score=82.66  Aligned_cols=159  Identities=14%  Similarity=0.060  Sum_probs=111.3

Q ss_pred             CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCC
Q 018474          132 SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK  211 (355)
Q Consensus       132 ~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~  211 (355)
                      .+..+|.+++ ++||+++..               .....|.++|++++++.....-...+.|..++.+++.+|+.....
T Consensus        21 ~ftqGL~~~~-~~LyestG~---------------~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~   84 (243)
T 3mbr_X           21 AFTEGLFYLR-GHLYESTGE---------------TGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRN   84 (243)
T ss_dssp             CCEEEEEEET-TEEEEEECC---------------TTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSS
T ss_pred             cccccEEEEC-CEEEEECCC---------------CCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeC
Confidence            7888999986 899998764               113479999999998765443323333333444567899999889


Q ss_pred             CeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCC
Q 018474          212 FRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDA  291 (355)
Q Consensus       212 ~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (355)
                      +.+++||.+..  .....+.  .++.+-+++.|. +++|+++..                                    
T Consensus        85 ~~v~v~D~~tl--~~~~ti~--~~~~Gwglt~dg-~~L~vSdgs------------------------------------  123 (243)
T 3mbr_X           85 HEGFVYDLATL--TPRARFR--YPGEGWALTSDD-SHLYMSDGT------------------------------------  123 (243)
T ss_dssp             SEEEEEETTTT--EEEEEEE--CSSCCCEEEECS-SCEEEECSS------------------------------------
T ss_pred             CEEEEEECCcC--cEEEEEe--CCCCceEEeeCC-CEEEEECCC------------------------------------
Confidence            99999997542  2222232  234456777663 589999743                                    


Q ss_pred             ceEEEEEeCCCCeEEEEEECC-CCCcccceeEEEEeCCEEEEeecCCCeEEEeeCCCC
Q 018474          292 GARVVKVDGNDGKIIRDFNDP-DATYISFVTSAAEFDGNLYLASLQSNFIGILPLDGP  348 (355)
Q Consensus       292 ~~~v~~~~~~~g~~~~~~~~~-~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~~~  348 (355)
                       +.|..+||++.+....+... +|........+...+|+||+....++.|.+++..+-
T Consensus       124 -~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw~s~~I~vIDp~tG  180 (243)
T 3mbr_X          124 -AVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWLTSRIARIDPASG  180 (243)
T ss_dssp             -SEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTTTEEEEECTTTC
T ss_pred             -CeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEECCCCeEEEEECCCC
Confidence             36999999778888877653 343344455555668999999999999999987653

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.00  E-value=2.8e-07  Score=86.62  Aligned_cols=162  Identities=11%  Similarity=0.072  Sum_probs=104.7

Q ss_pred             CEEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCCC---cEEEEc-CCC-eEEEcCCcCCcccEEEccCCc-E
Q 018474           73 GWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEK---GLLKVT-EEG-VEAIVPDASFTNDVIAASDGT-L  145 (355)
Q Consensus        73 g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~~---gl~~~~-~~g-~~~~~~~~~~~~~l~~d~dG~-l  145 (355)
                      +.|+.+|...+....+........ ++++.++|+ |..+...+   .++.++ .+| .+.+......+.+++++|||+ |
T Consensus       159 ~~i~i~d~~g~~~~~l~~~~~~v~-~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~l  237 (415)
T 2hqs_A          159 YELRVSDYDGYNQFVVHRSPQPLM-SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKL  237 (415)
T ss_dssp             EEEEEEETTSCSCEEEEEESSCEE-EEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEE
T ss_pred             ceEEEEcCCCCCCEEEeCCCCcce-eeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEE
Confidence            688999986555555544445566 889999997 44444332   577777 466 555544335678899999996 6


Q ss_pred             EEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCC--CeEEEEEeCCCC
Q 018474          146 YFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK--FRCRRYWLKGDR  223 (355)
Q Consensus       146 y~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~--~~i~~~~~~~~~  223 (355)
                      +++.+.               .....|+.||.++++...+.........++++|||+.++++....  ..|+.+++++..
T Consensus       238 a~~~~~---------------~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~  302 (415)
T 2hqs_A          238 AFALSK---------------TGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA  302 (415)
T ss_dssp             EEEECT---------------TSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC
T ss_pred             EEEEec---------------CCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC
Confidence            655432               113469999998888766554444456789999999887776432  378888876533


Q ss_pred             CcceeEecccCCCCcCceEECCCCCEEEEee
Q 018474          224 AGILDAFIENLPGGPDNINLAPDGSFWIGLI  254 (355)
Q Consensus       224 ~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~  254 (355)
                      .   +.+. ........+.++++|++.+...
T Consensus       303 ~---~~l~-~~~~~~~~~~~spdG~~l~~~~  329 (415)
T 2hqs_A          303 P---QRIT-WEGSQNQDADVSSDGKFMVMVS  329 (415)
T ss_dssp             C---EECC-CSSSEEEEEEECTTSSEEEEEE
T ss_pred             E---EEEe-cCCCcccCeEECCCCCEEEEEE
Confidence            2   2221 1122334577899998655443

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.99  E-value=3.5e-07  Score=79.84  Aligned_cols=197  Identities=12%  Similarity=0.085  Sum_probs=126.6

Q ss_pred             CCcccCeEECCC-CCEEEEeCC-CcEEEEcCCC--eEEEc-CCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccC
Q 018474           93 SQSLLGLTTTKD-GGVILCDNE-KGLLKVTEEG--VEAIV-PDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGK  167 (355)
Q Consensus        93 ~~p~~gl~~d~~-g~L~v~~~~-~gl~~~~~~g--~~~~~-~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~  167 (355)
                      ..+. ||++|++ ++||++... ..|+.++.+|  .+.+. .....+.+|+++++|.+|+++..                
T Consensus        27 ~~lS-Gla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~----------------   89 (255)
T 3qqz_A           27 NNIS-SLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLDFVKDLETIEYIGDNQFVISDER----------------   89 (255)
T ss_dssp             SCEE-EEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEECSSCSSEEEEEECSTTEEEEEETT----------------
T ss_pred             cCcc-eeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEecCCCCChHHeEEeCCCEEEEEECC----------------
Confidence            4577 9999975 579985544 4599999667  44443 22367889999999999998754                


Q ss_pred             CCCeEEEEe--CCCC--eEEEeeccc-ccc-----ccEEEeCCCCEEEEEeCCCC-eEEEEEeCCCC-CcceeEecc---
Q 018474          168 PYGQLRKYD--PKLK--ETTVLHEGF-YFA-----NGIALSKNEDFVVVCESWKF-RCRRYWLKGDR-AGILDAFIE---  232 (355)
Q Consensus       168 ~~g~l~~~d--p~~~--~~~~~~~~~-~~p-----ngi~~~~dg~~l~v~~~~~~-~i~~~~~~~~~-~~~~~~~~~---  232 (355)
                       .++++.|+  ..+.  ......-.+ ..+     .|+|++++++.||++..... +|+.++  |.. ........+   
T Consensus        90 -~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~--g~~~~~~l~i~~~~~~  166 (255)
T 3qqz_A           90 -DYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN--GLLSSNELHISKDKAL  166 (255)
T ss_dssp             -TTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE--STTCSSCCEEEECHHH
T ss_pred             -CCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc--ccccCCceeeecchhh
Confidence             34565553  3221  111111111 123     79999999988998876544 677776  311 111222110   


Q ss_pred             --cC-CCCcCceEECCC-CCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEE
Q 018474          233 --NL-PGGPDNINLAPD-GSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRD  308 (355)
Q Consensus       233 --~~-~g~p~~i~~d~~-G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~  308 (355)
                        .. ..-+.++++|+. |++|+-....                                    ..++++|. +|+....
T Consensus       167 ~~~~~~~d~S~l~~dp~tg~lliLS~~s------------------------------------~~L~~~d~-~g~~~~~  209 (255)
T 3qqz_A          167 QRQFTLDDVSGAEFNQQKNTLLVLSHES------------------------------------RALQEVTL-VGEVIGE  209 (255)
T ss_dssp             HHTCCSSCCCEEEEETTTTEEEEEETTT------------------------------------TEEEEECT-TCCEEEE
T ss_pred             ccccccCCceeEEEcCCCCeEEEEECCC------------------------------------CeEEEEcC-CCCEEEE
Confidence              01 112577888864 6788877542                                    47999999 9998877


Q ss_pred             EECCCCC-----cccceeEEEEeC-CEEEEeecCCCeEEEeeCCC
Q 018474          309 FNDPDAT-----YISFVTSAAEFD-GNLYLASLQSNFIGILPLDG  347 (355)
Q Consensus       309 ~~~~~g~-----~~~~~~~~~~~~-g~L~v~~~~~~~i~~~~~~~  347 (355)
                      +.-..|.     .+...-+++.+. |+|||.+= .|.++|+.-.+
T Consensus       210 ~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE-~n~~y~f~~~~  253 (255)
T 3qqz_A          210 MSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSE-PNRFYRFTPQS  253 (255)
T ss_dssp             EECSTTGGGCSSCCCSEEEEEECTTCCEEEEET-TTEEEEEEC--
T ss_pred             EEcCCccCCcccccCCCCeeEECCCCCEEEEcC-CceEEEEEecC
Confidence            7766542     245677888764 99999965 78999997543

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.98  E-value=2e-07  Score=86.34  Aligned_cols=245  Identities=16%  Similarity=0.104  Sum_probs=138.5

Q ss_pred             eEecCCCCCCCceEEEeeCCCeEEEEec----------CCEEEEEEcCCCeeEEeecc--------CCCcccCeEECCCC
Q 018474           44 TKLGEGCVNHPEDVSVVVSKGALYTATR----------DGWVKYFILHNETLVNWKHI--------DSQSLLGLTTTKDG  105 (355)
Q Consensus        44 ~~~~~~~~~~p~~i~~d~~~g~l~~~~~----------~g~i~~~~~~~g~~~~~~~~--------~~~p~~gl~~d~~g  105 (355)
                      ..++.|  ..|. ++++|++..+|+++.          ++.|..+|..+++...-...        +..|. ++++++||
T Consensus        73 ~~I~vG--~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~-~~a~spDG  148 (386)
T 3sjl_D           73 GMIDGG--FLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPW-MTSLTPDG  148 (386)
T ss_dssp             EEEEEC--SSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGG-GEEECTTS
T ss_pred             EEEECC--CCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCc-eEEEcCCC
Confidence            345555  5685 999988889999862          46699999988876543222        23699 99999999


Q ss_pred             C-EEEEeC--CCcEEEEc-CCC--eEEEcCCc---CCccc----EEEccCCcEEEEeCCCCCCCccccccccccCCCCeE
Q 018474          106 G-VILCDN--EKGLLKVT-EEG--VEAIVPDA---SFTND----VIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQL  172 (355)
Q Consensus       106 ~-L~v~~~--~~gl~~~~-~~g--~~~~~~~~---~~~~~----l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l  172 (355)
                      + |||++.  .+.+..+| .++  +..+....   ..|.+    +++.+||++.+.+...                .+.+
T Consensus       149 k~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~----------------~g~v  212 (386)
T 3sjl_D          149 KTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGT----------------EGTP  212 (386)
T ss_dssp             SEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCS----------------SSCC
T ss_pred             CEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCC----------------CCeE
Confidence            6 899874  34577888 465  45553221   11222    2445566433332210                0111


Q ss_pred             EEEeCCCCeEEEeecc--ccccccEEEe-CCCCEEEEEeCCCCeEEEEEeCCCCCc---ceeEecc--cCCC-CcCc---
Q 018474          173 RKYDPKLKETTVLHEG--FYFANGIALS-KNEDFVVVCESWKFRCRRYWLKGDRAG---ILDAFIE--NLPG-GPDN---  240 (355)
Q Consensus       173 ~~~dp~~~~~~~~~~~--~~~pngi~~~-~dg~~l~v~~~~~~~i~~~~~~~~~~~---~~~~~~~--~~~g-~p~~---  240 (355)
                      ..-.  +    .....  ....+..+++ +||+.+|++.  .++|+.++..+....   ....+.+  ..++ .|.+   
T Consensus       213 ~~~~--~----~~~~~~~~~~~~~~~~~~~dG~~~~vs~--~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~  284 (386)
T 3sjl_D          213 EITH--T----EVFHPEDEFLINHPAYSQKAGRLVWPTY--TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQ  284 (386)
T ss_dssp             EEEE--C----CCCSCTTSCBCSCCEEETTTTEEEEEBT--TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSC
T ss_pred             EEee--c----ceeccccccccccceeEcCCCcEEEEeC--CCEEEEEECCCCcceeecceeccccccccccccCCCcce
Confidence            0000  0    00100  0111123443 7887566554  578999998654321   1111111  0011 2333   


Q ss_pred             eEECCCC-CEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccc
Q 018474          241 INLAPDG-SFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISF  319 (355)
Q Consensus       241 i~~d~~G-~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~  319 (355)
                      +.+++++ ++||++......    .                       ...+...|..+|.++++.+..+....     .
T Consensus       285 ~a~~~~~~~lyV~~~~~~~~----~-----------------------hk~~~~~V~viD~~t~kv~~~i~vg~-----~  332 (386)
T 3sjl_D          285 VAYHRALDRIYLLVDQRDEW----R-----------------------HKTASRFVVVLDAKTGERLAKFEMGH-----E  332 (386)
T ss_dssp             EEEETTTTEEEEEEEECCTT----C-----------------------TTSCEEEEEEEETTTCCEEEEEEEEE-----E
T ss_pred             eeECCCCCeEEEEecccccc----c-----------------------cCCCCCEEEEEECCCCeEEEEEECCC-----C
Confidence            6777666 699998642100    0                       00223579999998899888886632     2


Q ss_pred             eeEEEE--eCC-EEEEeecCCCeEEEeeCCCC
Q 018474          320 VTSAAE--FDG-NLYLASLQSNFIGILPLDGP  348 (355)
Q Consensus       320 ~~~~~~--~~g-~L~v~~~~~~~i~~~~~~~~  348 (355)
                      +.++..  ++. .||+++..++.|.+++..+-
T Consensus       333 ~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~  364 (386)
T 3sjl_D          333 IDSINVSQDEKPLLYALSTGDKTLYIHDAESG  364 (386)
T ss_dssp             ECEEEECSSSSCEEEEEETTTTEEEEEETTTC
T ss_pred             cceEEECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence            333443  333 68888888999999987653

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.98  E-value=9.2e-07  Score=81.52  Aligned_cols=221  Identities=14%  Similarity=0.116  Sum_probs=127.4

Q ss_pred             eEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeecc----------CCCcccCeEECCCCCEEEEeCCCcEEEEcC-CC-
Q 018474           56 DVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI----------DSQSLLGLTTTKDGGVILCDNEKGLLKVTE-EG-  123 (355)
Q Consensus        56 ~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~----------~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~-~g-  123 (355)
                      ..+++  ++.+|+++.++.|+.+|.++|+..-....          .......... .++++|+++..++++.++. +| 
T Consensus        48 ~p~v~--~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~v~~~~g~l~a~d~~tG~  124 (376)
T 3q7m_A           48 HPALA--DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV-SGGHVYIGSEKAQVYALNTSDGT  124 (376)
T ss_dssp             CCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE-ETTEEEEEETTSEEEEEETTTCC
T ss_pred             ccEEE--CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE-eCCEEEEEcCCCEEEEEECCCCC
Confidence            55665  78999999999999999988875421111          1111102333 4789999987778999994 77 


Q ss_pred             eEE-EcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccc------cccEE
Q 018474          124 VEA-IVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYF------ANGIA  196 (355)
Q Consensus       124 ~~~-~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~------pngi~  196 (355)
                      ... ...........++ .+|.+|+...                  .+.++.+|+++|+..........      ....+
T Consensus       125 ~~W~~~~~~~~~~~p~~-~~~~v~v~~~------------------~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~  185 (376)
T 3q7m_A          125 VAWQTKVAGEALSRPVV-SDGLVLIHTS------------------NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPT  185 (376)
T ss_dssp             EEEEEECSSCCCSCCEE-ETTEEEEECT------------------TSEEEEEETTTCCEEEEEECCC-----CCCCCCE
T ss_pred             EEEEEeCCCceEcCCEE-ECCEEEEEcC------------------CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcE
Confidence            322 2111111111222 3678888642                  45799999988876543322110      12223


Q ss_pred             EeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCC---------CcCceEECCCCCEEEEeecCCchhhHhhhcc
Q 018474          197 LSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPG---------GPDNINLAPDGSFWIGLIKMNQTGVRAIQKC  267 (355)
Q Consensus       197 ~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g---------~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~  267 (355)
                      +. ++ .+|+. +..+.|..++.+..+........ ...+         ....... .+|.+|+++..            
T Consensus       186 ~~-~~-~v~~g-~~~g~l~~~d~~tG~~~w~~~~~-~~~~~~~~~~~~~~~~~p~~-~~~~v~~~~~~------------  248 (376)
T 3q7m_A          186 TA-FG-AAVVG-GDNGRVSAVLMEQGQMIWQQRIS-QATGSTEIDRLSDVDTTPVV-VNGVVFALAYN------------  248 (376)
T ss_dssp             EE-TT-EEEEC-CTTTEEEEEETTTCCEEEEEECC-C-----------CCCCCCEE-ETTEEEEECTT------------
T ss_pred             EE-CC-EEEEE-cCCCEEEEEECCCCcEEEEEecc-cCCCCcccccccccCCCcEE-ECCEEEEEecC------------
Confidence            33 33 46664 45678999997533221111110 0000         0011122 35789998754            


Q ss_pred             hhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeCCEEEEeecCCCeEEEeeCCC
Q 018474          268 REKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLDG  347 (355)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~~  347 (355)
                                               +.+..+|+++|+..-.+..  +    ........+++||+++. .+.|..++..+
T Consensus       249 -------------------------g~l~~~d~~tG~~~w~~~~--~----~~~~~~~~~~~l~~~~~-~g~l~~~d~~t  296 (376)
T 3q7m_A          249 -------------------------GNLTALDLRSGQIMWKREL--G----SVNDFIVDGNRIYLVDQ-NDRVMALTIDG  296 (376)
T ss_dssp             -------------------------SCEEEEETTTCCEEEEECC--C----CEEEEEEETTEEEEEET-TCCEEEEETTT
T ss_pred             -------------------------cEEEEEECCCCcEEeeccC--C----CCCCceEECCEEEEEcC-CCeEEEEECCC
Confidence                                     4699999878887654432  2    13345667899999986 56787777654

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.97  E-value=3.4e-07  Score=85.66  Aligned_cols=193  Identities=8%  Similarity=0.040  Sum_probs=118.4

Q ss_pred             eCCCeEEEEec-CCEEEEEEcCCC----eeEEee-------ccC-CCcccCeEECCCCCEEEEeCC-------CcEEEEc
Q 018474           61 VSKGALYTATR-DGWVKYFILHNE----TLVNWK-------HID-SQSLLGLTTTKDGGVILCDNE-------KGLLKVT  120 (355)
Q Consensus        61 ~~~g~l~~~~~-~g~i~~~~~~~g----~~~~~~-------~~~-~~p~~gl~~d~~g~L~v~~~~-------~gl~~~~  120 (355)
                      .+.+.||+... +++|+.+|.++.    +.....       +.+ .+|+ +++..++| +||+..+       ++++.+|
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph-~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD  170 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLH-TVHCGPDA-IYISALGNEEGEGPGGILMLD  170 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEE-EEEECSSC-EEEEEEEETTSCSCCEEEEEC
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCccc-ceeECCCe-EEEEcCCCcCCCCCCeEEEEE
Confidence            36788998654 688999997644    333332       112 3688 89999999 9996543       3689999


Q ss_pred             C-CC--eEEEcCC---cCCcccEEEccCCcEEEEeC-CCCCC-CccccccccccCCCCeEEEEeCCCCeEEEeecc---c
Q 018474          121 E-EG--VEAIVPD---ASFTNDVIAASDGTLYFTVA-STKYT-PTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG---F  189 (355)
Q Consensus       121 ~-~g--~~~~~~~---~~~~~~l~~d~dG~ly~~d~-~~~~~-~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~---~  189 (355)
                      . ++  +..+...   ..+..++-+.+++++.++.. ...-. ...+....++......|..||.++++......-   .
T Consensus       171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g  250 (462)
T 2ece_A          171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEEN  250 (462)
T ss_dssp             TTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTE
T ss_pred             CCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCC
Confidence            4 55  5554422   15667788899987666542 10000 000111111112356899999987754332221   2


Q ss_pred             cccccEEE--eCCCCEEEEEeC-----CCCeEEEEEeCCCCCcceeEe--c-----ccC----------CCCcCceEECC
Q 018474          190 YFANGIAL--SKNEDFVVVCES-----WKFRCRRYWLKGDRAGILDAF--I-----ENL----------PGGPDNINLAP  245 (355)
Q Consensus       190 ~~pngi~~--~~dg~~l~v~~~-----~~~~i~~~~~~~~~~~~~~~~--~-----~~~----------~g~p~~i~~d~  245 (355)
                      ..|..+.+  +||++++|++..     ..+.|+++..++......+.+  .     ..+          +..|.+|.++.
T Consensus       251 ~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~  330 (462)
T 2ece_A          251 RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISL  330 (462)
T ss_dssp             EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECT
T ss_pred             CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECC
Confidence            46777766  999999999998     888998877654221111111  0     011          24678899999


Q ss_pred             CCC-EEEEeec
Q 018474          246 DGS-FWIGLIK  255 (355)
Q Consensus       246 ~G~-lwv~~~~  255 (355)
                      ||+ +||++..
T Consensus       331 DGrfLYVSnrg  341 (462)
T 2ece_A          331 DDKFLYLSLWG  341 (462)
T ss_dssp             TSCEEEEEETT
T ss_pred             CCCEEEEEeCC
Confidence            997 7887755

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=98.95  E-value=8.1e-07  Score=80.97  Aligned_cols=236  Identities=11%  Similarity=0.033  Sum_probs=143.7

Q ss_pred             CCCceEEEeeCCCeEEEEecCCEEEEEEcCCCe---eEEeeccCCCcccCeEECCCCCEEEEeCCCc-EEEEc-CCC--e
Q 018474           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNET---LVNWKHIDSQSLLGLTTTKDGGVILCDNEKG-LLKVT-EEG--V  124 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~---~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~g-l~~~~-~~g--~  124 (355)
                      ..-.++++.+++..++++..++.|..++..+++   ...+......+. ++++.++|+++++....| +..++ .++  .
T Consensus         9 ~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~   87 (372)
T 1k8k_C            9 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVT-GVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK   87 (372)
T ss_dssp             SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEE-EEEEETTTTEEEEEETTSCEEEEEEETTEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCccc-EEEEeCCCCEEEEEcCCCeEEEEECCCCeee
Confidence            456788999767777788889999999997775   233332334567 899999988666544444 55555 344  2


Q ss_pred             EEE--cCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCe----EEEeecc-ccccccEEE
Q 018474          125 EAI--VPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE----TTVLHEG-FYFANGIAL  197 (355)
Q Consensus       125 ~~~--~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~----~~~~~~~-~~~pngi~~  197 (355)
                      ...  ......+.++.++++|+..++...                 .+.+..||.++++    ...+... ......+++
T Consensus        88 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------------d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~  150 (372)
T 1k8k_C           88 PTLVILRINRAARCVRWAPNEKKFAVGSG-----------------SRVISICYFEQENDWWVCKHIKKPIRSTVLSLDW  150 (372)
T ss_dssp             EEEECCCCSSCEEEEEECTTSSEEEEEET-----------------TSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEE
T ss_pred             eeEEeecCCCceeEEEECCCCCEEEEEeC-----------------CCEEEEEEecCCCcceeeeeeecccCCCeeEEEE
Confidence            222  222267888999999976655332                 3345555544443    2222222 234578999


Q ss_pred             eCCCCEEEEEeCCCCeEEEEEeCCCC---------------CcceeEecccCCCCcCceEECCCCCEEEEeecCCchhhH
Q 018474          198 SKNEDFVVVCESWKFRCRRYWLKGDR---------------AGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVR  262 (355)
Q Consensus       198 ~~dg~~l~v~~~~~~~i~~~~~~~~~---------------~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~  262 (355)
                      +|+++.++.+ ...+.|..|++....               .+..........+....+.++++|++.++....      
T Consensus       151 ~~~~~~l~~~-~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------  223 (372)
T 1k8k_C          151 HPNSVLLAAG-SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHD------  223 (372)
T ss_dssp             CTTSSEEEEE-ETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETT------
T ss_pred             cCCCCEEEEE-cCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCC------
Confidence            9999965555 456788889864210               111111111222334567788888766655431      


Q ss_pred             hhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEe-CCEEEEeecCCCeEE
Q 018474          263 AIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-DGNLYLASLQSNFIG  341 (355)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~v~~~~~~~i~  341 (355)
                                                    +.|..+|..+++.+..+..+.+    .+..+... ++++.+++ ..+.|.
T Consensus       224 ------------------------------~~i~i~d~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~-~d~~i~  268 (372)
T 1k8k_C          224 ------------------------------STVCLADADKKMAVATLASETL----PLLAVTFITESSLVAAG-HDCFPV  268 (372)
T ss_dssp             ------------------------------TEEEEEEGGGTTEEEEEECSSC----CEEEEEEEETTEEEEEE-TTSSCE
T ss_pred             ------------------------------CEEEEEECCCCceeEEEccCCC----CeEEEEEecCCCEEEEE-eCCeEE
Confidence                                          3577788757787778876543    34445543 57766666 678888


Q ss_pred             EeeCCC
Q 018474          342 ILPLDG  347 (355)
Q Consensus       342 ~~~~~~  347 (355)
                      .++++.
T Consensus       269 i~~~~~  274 (372)
T 1k8k_C          269 LFTYDS  274 (372)
T ss_dssp             EEEEET
T ss_pred             EEEccC
Confidence            888765

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.95  E-value=6e-08  Score=88.91  Aligned_cols=138  Identities=14%  Similarity=0.147  Sum_probs=95.9

Q ss_pred             CCCceEEEeeC-CC--eEEEEecCC-----EEEEEEcCCCeeEEeecc----CCCcccCeEECCCCCEEEEeC-------
Q 018474           52 NHPEDVSVVVS-KG--ALYTATRDG-----WVKYFILHNETLVNWKHI----DSQSLLGLTTTKDGGVILCDN-------  112 (355)
Q Consensus        52 ~~p~~i~~d~~-~g--~l~~~~~~g-----~i~~~~~~~g~~~~~~~~----~~~p~~gl~~d~~g~L~v~~~-------  112 (355)
                      ..|.+|.+.++ ++  +||+.....     +|+++++.++....+...    ..+|+ .+++|++|++|+++.       
T Consensus       112 f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pN-D~~v~~~G~fyvt~~~~ftd~~  190 (355)
T 3sre_A          112 FNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVN-DIVAVGPEHFYATNDHYFIDPY  190 (355)
T ss_dssp             CCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEE-EEEEEETTEEEEEESCSCSSHH
T ss_pred             eeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCc-eEEEeCCCCEEecCCcEeCCcc
Confidence            48999998742 33  588876532     478888865654443222    24688 999999999999875       


Q ss_pred             -----------CCcEEEEcCCCeEEEcCCcCCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCC-C
Q 018474          113 -----------EKGLLKVTEEGVEAIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPK-L  179 (355)
Q Consensus       113 -----------~~gl~~~~~~g~~~~~~~~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~-~  179 (355)
                                 .+.++++++..++.+......||++++++|| .+|++++.                 ...+++|+-+ +
T Consensus       191 ~~~~e~~~~~~~g~vyr~d~~~~~~~~~~l~~pNGia~spDg~~lYvadt~-----------------~~~I~~~~~~~~  253 (355)
T 3sre_A          191 LKSWEMHLGLAWSFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIAELL-----------------AHKIHVYEKHAN  253 (355)
T ss_dssp             HHHHHHHTTCCCEEEEEECTTCCEEEEEEESSEEEEEECTTSSEEEEEEGG-----------------GTEEEEEEECTT
T ss_pred             cccchhhccCCccEEEEEECCeEEEeecCCcccCcceECCCCCEEEEEeCC-----------------CCeEEEEEECCC
Confidence                       1348888863356555556899999999998 79999875                 4567777642 3


Q ss_pred             CeEEE--eeccccccccEEEeC-CCCEEEEEe
Q 018474          180 KETTV--LHEGFYFANGIALSK-NEDFVVVCE  208 (355)
Q Consensus       180 ~~~~~--~~~~~~~pngi~~~~-dg~~l~v~~  208 (355)
                      +++..  ...-...|+|+++++ +|+ +|++.
T Consensus       254 g~l~~~~~~~~~g~PDGi~vD~e~G~-lwva~  284 (355)
T 3sre_A          254 WTLTPLRVLSFDTLVDNISVDPVTGD-LWVGC  284 (355)
T ss_dssp             SCEEEEEEEECSSEEEEEEECTTTCC-EEEEE
T ss_pred             CcEecCEEEeCCCCCceEEEeCCCCc-EEEEe
Confidence            43321  123346799999999 598 88854

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.95  E-value=2.2e-07  Score=81.48  Aligned_cols=164  Identities=12%  Similarity=0.096  Sum_probs=104.8

Q ss_pred             cCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEc-CC-C-eEEEcCCc--CCcccEEEccCCcE
Q 018474           71 RDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT-EE-G-VEAIVPDA--SFTNDVIAASDGTL  145 (355)
Q Consensus        71 ~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~-~~-g-~~~~~~~~--~~~~~l~~d~dG~l  145 (355)
                      .++.|+.+|..+++...+......+. ++++.++|+.++....+.++.++ .+ + ...+....  ..+.+++++++|+.
T Consensus        20 ~~~~i~~~d~~~~~~~~~~~~~~~v~-~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~   98 (297)
T 2ojh_A           20 MRSSIEIFNIRTRKMRVVWQTPELFE-APNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGAL   98 (297)
T ss_dssp             CCEEEEEEETTTTEEEEEEEESSCCE-EEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSE
T ss_pred             cceeEEEEeCCCCceeeeccCCcceE-eeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECCCCCE
Confidence            36789999998888776655555677 89999999866655566788888 46 7 55443322  56788999999964


Q ss_pred             EEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCCC--eEEEEEeCCCC
Q 018474          146 YFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKF--RCRRYWLKGDR  223 (355)
Q Consensus       146 y~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~--~i~~~~~~~~~  223 (355)
                      .+.....             ......++.++..+++.+.+... .....++++||++.++++....+  .|+.++.++. 
T Consensus        99 l~~~~~~-------------~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~-  163 (297)
T 2ojh_A           99 YAISDKV-------------EFGKSAIYLLPSTGGTPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG-  163 (297)
T ss_dssp             EEEEECT-------------TTSSCEEEEEETTCCCCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTC-
T ss_pred             EEEEEeC-------------CCCcceEEEEECCCCceEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCC-
Confidence            4432210             01245799999877765554332 23667899999998886654445  4555554332 


Q ss_pred             CcceeEecccCCCCcCceEECCCCCE-EEEe
Q 018474          224 AGILDAFIENLPGGPDNINLAPDGSF-WIGL  253 (355)
Q Consensus       224 ~~~~~~~~~~~~g~p~~i~~d~~G~l-wv~~  253 (355)
                        ....+. ...+....+.++++|+. +++.
T Consensus       164 --~~~~~~-~~~~~~~~~~~s~dg~~l~~~~  191 (297)
T 2ojh_A          164 --VETRLT-HGEGRNDGPDYSPDGRWIYFNS  191 (297)
T ss_dssp             --CEEECC-CSSSCEEEEEECTTSSEEEEEE
T ss_pred             --cceEcc-cCCCccccceECCCCCEEEEEe
Confidence              222222 22334566788899974 4444

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=98.94  E-value=1.7e-06  Score=80.32  Aligned_cols=236  Identities=12%  Similarity=0.080  Sum_probs=144.0

Q ss_pred             ceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeec-cCCCcccCeEECCCCCEEEEeCCCc-EEEEc-CCC--eEEEcC
Q 018474           55 EDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH-IDSQSLLGLTTTKDGGVILCDNEKG-LLKVT-EEG--VEAIVP  129 (355)
Q Consensus        55 ~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~-~~~~p~~gl~~d~~g~L~v~~~~~g-l~~~~-~~g--~~~~~~  129 (355)
                      .++++.+++..|.++..++.|..+|..+++...... ....+. ++++.++|+.+++...++ +..++ .++  ...+..
T Consensus       127 ~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~-~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~  205 (393)
T 1erj_A          127 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIY-SLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI  205 (393)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             EEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEE-EEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEc
Confidence            478888767778888899999999998887654433 234466 899999988666554555 44455 455  333322


Q ss_pred             CcCCcccEEEcc-CCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeec--------cccccccEEEeCC
Q 018474          130 DASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE--------GFYFANGIALSKN  200 (355)
Q Consensus       130 ~~~~~~~l~~d~-dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~--------~~~~pngi~~~~d  200 (355)
                      . ..+..+++.+ +|++.++.+.                 .+.+..||..+++......        .......++++||
T Consensus       206 ~-~~v~~~~~~~~~~~~l~~~s~-----------------d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~  267 (393)
T 1erj_A          206 E-DGVTTVAVSPGDGKYIAAGSL-----------------DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD  267 (393)
T ss_dssp             S-SCEEEEEECSTTCCEEEEEET-----------------TSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTT
T ss_pred             C-CCcEEEEEECCCCCEEEEEcC-----------------CCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCC
Confidence            2 4577888888 7877665433                 4567888887765432221        1123457899999


Q ss_pred             CCEEEEEeCCCCeEEEEEeCCCCC---------cceeEecccCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHH
Q 018474          201 EDFVVVCESWKFRCRRYWLKGDRA---------GILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKW  271 (355)
Q Consensus       201 g~~l~v~~~~~~~i~~~~~~~~~~---------~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~  271 (355)
                      ++.++ +....+.|..|++.....         +...............+.++++|.+.++...                
T Consensus       268 g~~l~-s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~----------------  330 (393)
T 1erj_A          268 GQSVV-SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK----------------  330 (393)
T ss_dssp             SSEEE-EEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEET----------------
T ss_pred             CCEEE-EEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeC----------------
Confidence            99654 445677888888753211         0111111112222334667777776655433                


Q ss_pred             HHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEe-------CCEEEEeecCCCeEEEee
Q 018474          272 ELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-------DGNLYLASLQSNFIGILP  344 (355)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-------~g~L~v~~~~~~~i~~~~  344 (355)
                                          .+.|..+|.++++.+..+..+.+    .+..+...       +++++++......|...+
T Consensus       331 --------------------D~~v~iwd~~~~~~~~~l~~h~~----~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~  386 (393)
T 1erj_A          331 --------------------DRGVLFWDKKSGNPLLMLQGHRN----SVISVAVANGSSLGPEYNVFATGSGDCKARIWK  386 (393)
T ss_dssp             --------------------TSEEEEEETTTCCEEEEEECCSS----CEEEEEECSSCTTCTTCEEEEEEETTSEEEEEE
T ss_pred             --------------------CCeEEEEECCCCeEEEEECCCCC----CEEEEEecCCcCcCCCCCEEEEECCCCcEEECc
Confidence                                14688888867888888876554    34445443       356777666677888777


Q ss_pred             CCCCCC
Q 018474          345 LDGPEP  350 (355)
Q Consensus       345 ~~~~~~  350 (355)
                      +....|
T Consensus       387 ~~~~~p  392 (393)
T 1erj_A          387 YKKIAP  392 (393)
T ss_dssp             EEEC--
T ss_pred             ccccCC
Confidence            765544

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.93  E-value=3.1e-07  Score=84.77  Aligned_cols=215  Identities=14%  Similarity=0.130  Sum_probs=127.2

Q ss_pred             CCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEcC-CC-eEE-EcCCc-----CC
Q 018474           62 SKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE-EG-VEA-IVPDA-----SF  133 (355)
Q Consensus        62 ~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~-~g-~~~-~~~~~-----~~  133 (355)
                      .++.+|+++.++.|+.+|.++|+..--............. .+|++|+++..++++.++. +| ... .....     ..
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~-~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~  180 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV-SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRG  180 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEE-ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEE-ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecC
Confidence            4789999999999999999889754222222222202333 3789999987777999994 77 322 22111     01


Q ss_pred             cccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecccccc-------------ccEEEeCC
Q 018474          134 TNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFA-------------NGIALSKN  200 (355)
Q Consensus       134 ~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~p-------------ngi~~~~d  200 (355)
                      ....+++ +|.+|++..                  .+.++.+|+++++........ .|             ....+  +
T Consensus       181 ~~~~~~~-~~~v~~g~~------------------~g~l~~~d~~tG~~~w~~~~~-~~~~~~~~~~~~~~~~~p~~--~  238 (376)
T 3q7m_A          181 ESAPTTA-FGAAVVGGD------------------NGRVSAVLMEQGQMIWQQRIS-QATGSTEIDRLSDVDTTPVV--V  238 (376)
T ss_dssp             CCCCEEE-TTEEEECCT------------------TTEEEEEETTTCCEEEEEECC-C-----------CCCCCCEE--E
T ss_pred             CCCcEEE-CCEEEEEcC------------------CCEEEEEECCCCcEEEEEecc-cCCCCcccccccccCCCcEE--E
Confidence            1223333 577887532                  467999999888765433211 11             11122  2


Q ss_pred             CCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccch
Q 018474          201 EDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGL  280 (355)
Q Consensus       201 g~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (355)
                      +..+|+.. ..+.+.+++.+..+.. .+ .  .... ...+..+ ++++|+++..                         
T Consensus       239 ~~~v~~~~-~~g~l~~~d~~tG~~~-w~-~--~~~~-~~~~~~~-~~~l~~~~~~-------------------------  286 (376)
T 3q7m_A          239 NGVVFALA-YNGNLTALDLRSGQIM-WK-R--ELGS-VNDFIVD-GNRIYLVDQN-------------------------  286 (376)
T ss_dssp             TTEEEEEC-TTSCEEEEETTTCCEE-EE-E--CCCC-EEEEEEE-TTEEEEEETT-------------------------
T ss_pred             CCEEEEEe-cCcEEEEEECCCCcEE-ee-c--cCCC-CCCceEE-CCEEEEEcCC-------------------------
Confidence            34577765 4678999997533211 11 1  1111 2335554 5789999865                         


Q ss_pred             hhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeCCEEEEeecCCCeEEEeeCCC
Q 018474          281 ISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLDG  347 (355)
Q Consensus       281 ~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~~  347 (355)
                                  +.++++|+++|+..-.+....+.   ..+.....+++||+++. ...|..++..+
T Consensus       287 ------------g~l~~~d~~tG~~~w~~~~~~~~---~~~~~~~~~~~l~v~~~-~g~l~~~d~~t  337 (376)
T 3q7m_A          287 ------------DRVMALTIDGGVTLWTQSDLLHR---LLTSPVLYNGNLVVGDS-EGYLHWINVED  337 (376)
T ss_dssp             ------------CCEEEEETTTCCEEEEECTTTTS---CCCCCEEETTEEEEECT-TSEEEEEETTT
T ss_pred             ------------CeEEEEECCCCcEEEeecccCCC---cccCCEEECCEEEEEeC-CCeEEEEECCC
Confidence                        46999998788876555422221   22333456789999886 55777777544

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.92  E-value=3e-07  Score=80.61  Aligned_cols=180  Identities=12%  Similarity=0.037  Sum_probs=113.4

Q ss_pred             CCCceEEEeeCCCeEEEEecCCEEEEEEcCC-CeeEEeeccC--CCcccCeEECCCCCEEEEeC-----CCcEEEEcC-C
Q 018474           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHN-ETLVNWKHID--SQSLLGLTTTKDGGVILCDN-----EKGLLKVTE-E  122 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~-g~~~~~~~~~--~~p~~gl~~d~~g~L~v~~~-----~~gl~~~~~-~  122 (355)
                      ....++++.|++..++++. ++.|+.++..+ ++........  ..+. .+++.++|+.++...     ...++.++. +
T Consensus        42 ~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~-~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~  119 (297)
T 2ojh_A           42 ELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNN-DHGISPDGALYAISDKVEFGKSAIYLLPSTG  119 (297)
T ss_dssp             SCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCS-CCEECTTSSEEEEEECTTTSSCEEEEEETTC
T ss_pred             cceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEecccccccccc-ceEECCCCCEEEEEEeCCCCcceEEEEECCC
Confidence            4577899996666566554 78999999988 7766554322  3466 899999998554433     235777774 4


Q ss_pred             C-eEEEcCCcCCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCC
Q 018474          123 G-VEAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKN  200 (355)
Q Consensus       123 g-~~~~~~~~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~d  200 (355)
                      + .+.+... ..++.++++++|+ |+++...               ...-.++.++..+++...+.........++++||
T Consensus       120 ~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~---------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~d  183 (297)
T 2ojh_A          120 GTPRLMTKN-LPSYWHGWSPDGKSFTYCGIR---------------DQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPD  183 (297)
T ss_dssp             CCCEECCSS-SSEEEEEECTTSSEEEEEEEE---------------TTEEEEEEEETTTCCEEECCCSSSCEEEEEECTT
T ss_pred             CceEEeecC-CCccceEECCCCCEEEEEECC---------------CCceEEEEEECCCCcceEcccCCCccccceECCC
Confidence            5 5554433 3477788999995 5544322               0122688888877777665554455678999999


Q ss_pred             CCEEEEEeC--CCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEe
Q 018474          201 EDFVVVCES--WKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGL  253 (355)
Q Consensus       201 g~~l~v~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~  253 (355)
                      ++.++++..  ...+|+.++.++..   ...+. ........+.++++|++.+..
T Consensus       184 g~~l~~~~~~~~~~~i~~~~~~~~~---~~~~~-~~~~~~~~~~~s~dg~~l~~~  234 (297)
T 2ojh_A          184 GRWIYFNSSRTGQMQIWRVRVDGSS---VERIT-DSAYGDWFPHPSPSGDKVVFV  234 (297)
T ss_dssp             SSEEEEEECTTSSCEEEEEETTSSC---EEECC-CCSEEEEEEEECTTSSEEEEE
T ss_pred             CCEEEEEecCCCCccEEEECCCCCC---cEEEe-cCCcccCCeEECCCCCEEEEE
Confidence            998887754  34456666654322   22222 112223446788999854433

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.91  E-value=4.2e-07  Score=85.07  Aligned_cols=188  Identities=10%  Similarity=0.086  Sum_probs=114.0

Q ss_pred             CCCCceEEEeeCCCeEEEEec-C------CEEEEEEcCCCeeEEeeccCCC----cccCeEECCCCCEEEEe-C------
Q 018474           51 VNHPEDVSVVVSKGALYTATR-D------GWVKYFILHNETLVNWKHIDSQ----SLLGLTTTKDGGVILCD-N------  112 (355)
Q Consensus        51 ~~~p~~i~~d~~~g~l~~~~~-~------g~i~~~~~~~g~~~~~~~~~~~----p~~gl~~d~~g~L~v~~-~------  112 (355)
                      ...|..+... .+| +|++.. +      |++..+|.++++...-...+..    ++ .+.+.++++.+++. +      
T Consensus       137 ~s~Ph~~~~~-pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Y-d~~~~p~~~~mvsS~wg~p~~~  213 (462)
T 2ece_A          137 YSRLHTVHCG-PDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAY-DFWWNLPNEVLVSSEWAVPNTI  213 (462)
T ss_dssp             EEEEEEEEEC-SSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCC-CEEEETTTTEEEECBCCCHHHH
T ss_pred             CCcccceeEC-CCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccc-eEEECCCCCEEEEccCcCcccc
Confidence            4579999999 456 887543 2      6899999988876543332222    34 45567788755544 2      


Q ss_pred             -------------CCcEEEEc-CCC--eEEEcCC-c-CCcccEEE--ccCC-cEEEEeCCCCCCCccccccccccCCCCe
Q 018474          113 -------------EKGLLKVT-EEG--VEAIVPD-A-SFTNDVIA--ASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQ  171 (355)
Q Consensus       113 -------------~~gl~~~~-~~g--~~~~~~~-~-~~~~~l~~--d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~  171 (355)
                                   .+.|..++ .++  ++++... . ..|.++.+  +++| .+|++...+.-.          ...+-.
T Consensus       214 ~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~----------Lss~V~  283 (462)
T 2ece_A          214 EDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKD----------LSSSIW  283 (462)
T ss_dssp             TTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTT----------CCEEEE
T ss_pred             ccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccC----------CCceEE
Confidence                         35577777 455  4444432 1 46777766  8998 688876400000          011112


Q ss_pred             EEEEeCCCCeEEEee-----c----c------------ccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCC-CcceeE
Q 018474          172 LRKYDPKLKETTVLH-----E----G------------FYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDR-AGILDA  229 (355)
Q Consensus       172 l~~~dp~~~~~~~~~-----~----~------------~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~-~~~~~~  229 (355)
                      ++.||  .++++...     .    .            ...|.+|.+|+||++||+++.+.+.|.+|+++... ......
T Consensus       284 v~~~d--~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~  361 (462)
T 2ece_A          284 LWFYE--DGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGK  361 (462)
T ss_dssp             EEEEE--TTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEE
T ss_pred             EEEec--CCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEE
Confidence            34444  24443221     0    0            14578999999999999999999999999985321 111111


Q ss_pred             e-cc------------cCCCCcCceEECCCCC-EEEEe
Q 018474          230 F-IE------------NLPGGPDNINLAPDGS-FWIGL  253 (355)
Q Consensus       230 ~-~~------------~~~g~p~~i~~d~~G~-lwv~~  253 (355)
                      + ..            ...+.|.++.+++||+ +||+.
T Consensus       362 I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          362 VKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             EECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             EEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            1 11            1123599999999996 66665

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.91  E-value=8e-08  Score=92.90  Aligned_cols=192  Identities=13%  Similarity=0.043  Sum_probs=120.8

Q ss_pred             CCCeEEEEec-CCEEEEEEcCCCeeEEeec--cCCCcccCeEEC--CCC-CEEEEe-----------------CCCc-EE
Q 018474           62 SKGALYTATR-DGWVKYFILHNETLVNWKH--IDSQSLLGLTTT--KDG-GVILCD-----------------NEKG-LL  117 (355)
Q Consensus        62 ~~g~l~~~~~-~g~i~~~~~~~g~~~~~~~--~~~~p~~gl~~d--~~g-~L~v~~-----------------~~~g-l~  117 (355)
                      +++.+|+... +++|.++|.++.+...+..  .+..|+ |+++.  +++ .+|+++                 ...+ +-
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~ph-g~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIH-GLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEE-EEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCc-ceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence            4778999776 6789999999888665433  345699 99984  565 477774                 1122 34


Q ss_pred             EEcC-CC--eEEEcCCcCCcccEEEccCC-cEEEEeCCCCCC---------Cccccc---------ccccc--CCCCeEE
Q 018474          118 KVTE-EG--VEAIVPDASFTNDVIAASDG-TLYFTVASTKYT---------PTDFYK---------DMAEG--KPYGQLR  173 (355)
Q Consensus       118 ~~~~-~g--~~~~~~~~~~~~~l~~d~dG-~ly~~d~~~~~~---------~~~~~~---------~~~~~--~~~g~l~  173 (355)
                      .+|. +.  ..++.-. ..|..+++++|| .+|+++..+.-.         ..++..         .+-.+  ..-+++.
T Consensus       179 vID~~t~~v~~qI~Vg-g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~  257 (595)
T 1fwx_A          179 AVDADKWEVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK  257 (595)
T ss_dssp             EEETTTTEEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred             EEECCCCeEEEEEEeC-CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence            4553 33  3333322 368999999998 688877543111         001000         00001  0014588


Q ss_pred             EEeCCC--CeE-EEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCC------CCcc-eeEecc-cCCCCcCceE
Q 018474          174 KYDPKL--KET-TVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGD------RAGI-LDAFIE-NLPGGPDNIN  242 (355)
Q Consensus       174 ~~dp~~--~~~-~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~------~~~~-~~~~~~-~~~g~p~~i~  242 (355)
                      .+|+++  ++. .........|.|+.++|||+++|+++...+.|.+|+.+..      ++.. ...... .....|..++
T Consensus       258 VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~a  337 (595)
T 1fwx_A          258 VVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTA  337 (595)
T ss_dssp             EEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEE
T ss_pred             EEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEE
Confidence            899887  432 2233344679999999999999999999999999998632      1111 111111 1223589999


Q ss_pred             ECCCCCEEEEeec
Q 018474          243 LAPDGSFWIGLIK  255 (355)
Q Consensus       243 ~d~~G~lwv~~~~  255 (355)
                      +|++|+.|++..-
T Consensus       338 F~~dG~aY~t~~l  350 (595)
T 1fwx_A          338 FDGRGNAYTSLFL  350 (595)
T ss_dssp             ECTTSEEEEEETT
T ss_pred             ECCCCeEEEEEec
Confidence            9999988998865

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.91  E-value=6.9e-07  Score=82.33  Aligned_cols=247  Identities=13%  Similarity=0.068  Sum_probs=138.2

Q ss_pred             eEecCCCCCCCceEEEeeCCCeEEEEec----------CCEEEEEEcCCCeeEEeec-------cCCCcccCeEECCCCC
Q 018474           44 TKLGEGCVNHPEDVSVVVSKGALYTATR----------DGWVKYFILHNETLVNWKH-------IDSQSLLGLTTTKDGG  106 (355)
Q Consensus        44 ~~~~~~~~~~p~~i~~d~~~g~l~~~~~----------~g~i~~~~~~~g~~~~~~~-------~~~~p~~gl~~d~~g~  106 (355)
                      ..+..+  ..| .++++++++.+|+++.          ++.|..+|..+++......       .+..|. +++++++|+
T Consensus        45 ~~i~~g--~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~-~i~~spdg~  120 (361)
T 2oiz_A           45 GMVPTA--FNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDG-LFRQTTDGK  120 (361)
T ss_dssp             EEEECC--EEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGG-GEEECTTSS
T ss_pred             EEecCC--CCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcc-eEEECCCCC
Confidence            345554  568 9999988889999873          4569999988776543322       134688 999999996


Q ss_pred             -EEEEeCC--CcEEEEc-CCC--eEE-EcCCcCCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCC
Q 018474          107 -VILCDNE--KGLLKVT-EEG--VEA-IVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPK  178 (355)
Q Consensus       107 -L~v~~~~--~gl~~~~-~~g--~~~-~~~~~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~  178 (355)
                       ||++...  +.+..++ .++  +.. +...  ....+.+.++| ..|++...                 .|.+..++.+
T Consensus       121 ~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--~~~~v~~~p~~~~~~~~~~~-----------------dg~~~~v~~~  181 (361)
T 2oiz_A          121 FIVLQNASPATSIGIVDVAKGDYVEDVTAAA--GCWSVIPQPNRPRSFMTICG-----------------DGGLLTINLG  181 (361)
T ss_dssp             EEEEEEESSSEEEEEEETTTTEEEEEEGGGT--TEEEEEECTTSSSEEEEEET-----------------TSSEEEEEEC
T ss_pred             EEEEECCCCCCeEEEEECCCCcEEEEEecCC--CcceeEEcCCCCeeEEEECC-----------------CCcEEEEEEC
Confidence             8888743  3477777 455  443 3221  11113334443 33433221                 2222222221


Q ss_pred             -CCeEEE------eeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEec--c----cCCCCcCc---eE
Q 018474          179 -LKETTV------LHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFI--E----NLPGGPDN---IN  242 (355)
Q Consensus       179 -~~~~~~------~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~--~----~~~g~p~~---i~  242 (355)
                       +++...      ..+....|..+..++|++.+++.. ..+.++.++..+........+.  .    .....|.+   ++
T Consensus       182 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a  260 (361)
T 2oiz_A          182 EDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVS-YYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVG  260 (361)
T ss_dssp             TTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEB-TTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEE
T ss_pred             CCCcEeeeccccceEcCCCCceEEEecccCCEEEEEe-CCCeEEEEEecCCCceecccccccCccccccccccCCeeEEE
Confidence             122220      111112344556677887777665 4568988887543221111110  0    01112343   78


Q ss_pred             ECCCC-CEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCccccee
Q 018474          243 LAPDG-SFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVT  321 (355)
Q Consensus       243 ~d~~G-~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~  321 (355)
                      ++++| ++||+....+....                          .......|..+|.++++.+..+....      +.
T Consensus       261 ~~~dg~~lyv~~~~~~~~~~--------------------------~~~~~~~v~viD~~t~~~v~~i~~~~------p~  308 (361)
T 2oiz_A          261 LHRASGRMYVFMHPDGKEGT--------------------------HKFPAAEIWVMDTKTKQRVARIPGRD------AL  308 (361)
T ss_dssp             EETTTTEEEEEEESSCCTTC--------------------------TTCCCSEEEEEETTTTEEEEEEECTT------CC
T ss_pred             EecCCCeEEEEEccCCCccc--------------------------ccCCCceEEEEECCCCcEEEEEecCC------ee
Confidence            88885 68888752110000                          00112469999987888888886532      33


Q ss_pred             EEEE--eCCEEEEeecCCCeEEEeeCCCC
Q 018474          322 SAAE--FDGNLYLASLQSNFIGILPLDGP  348 (355)
Q Consensus       322 ~~~~--~~g~L~v~~~~~~~i~~~~~~~~  348 (355)
                      ++..  ++..||+++.  +.|.++++.+-
T Consensus       309 ~ia~spdg~~l~v~n~--~~v~v~D~~t~  335 (361)
T 2oiz_A          309 SMTIDQQRNLMLTLDG--GNVNVYDISQP  335 (361)
T ss_dssp             EEEEETTTTEEEEECS--SCEEEEECSSS
T ss_pred             EEEECCCCCEEEEeCC--CeEEEEECCCC
Confidence            4444  4578998884  99999987654

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.90  E-value=2.2e-07  Score=85.76  Aligned_cols=223  Identities=8%  Similarity=-0.088  Sum_probs=131.7

Q ss_pred             eEecCCCCCCCceEEEeeCCCeEEEEec----------CCEEEEEEcCCCeeEEeeccC--------CCcccCeEECCCC
Q 018474           44 TKLGEGCVNHPEDVSVVVSKGALYTATR----------DGWVKYFILHNETLVNWKHID--------SQSLLGLTTTKDG  105 (355)
Q Consensus        44 ~~~~~~~~~~p~~i~~d~~~g~l~~~~~----------~g~i~~~~~~~g~~~~~~~~~--------~~p~~gl~~d~~g  105 (355)
                      .+++.|  ..| +++++++++.+|+++.          ++.|..+|+.+++.......+        ..|. ++++++||
T Consensus        60 ~~i~vG--~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~-~ia~SpDG  135 (368)
T 1mda_H           60 GHSLGA--FLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVH-IIGNCASS  135 (368)
T ss_dssp             EEEEEC--TTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTT-SEEECTTS
T ss_pred             EEEeCC--CCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcc-eEEEcCCC
Confidence            456666  468 8999988999999872          578999999988765443332        4699 99999998


Q ss_pred             -CEEEEeCC-Cc-EEE--EcCCCeEEEcCCc---CCccc----EEEccCCcEEEEeCCC------CCC--------Cccc
Q 018474          106 -GVILCDNE-KG-LLK--VTEEGVEAIVPDA---SFTND----VIAASDGTLYFTVAST------KYT--------PTDF  159 (355)
Q Consensus       106 -~L~v~~~~-~g-l~~--~~~~g~~~~~~~~---~~~~~----l~~d~dG~ly~~d~~~------~~~--------~~~~  159 (355)
                       .|||+... .. +..  +|...++.+....   ..|.+    ++..++|++.+.+...      +..        +...
T Consensus       136 k~lyVan~~~~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~  215 (368)
T 1mda_H          136 ACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQ  215 (368)
T ss_dssp             SCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSC
T ss_pred             CEEEEEccCCCCeEEEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCC
Confidence             59999754 23 444  4531133332210   11111    2333455433222211      000        0000


Q ss_pred             ------cccccccCCCCeEEEEeCCCCeEEEeec----------ccccccc---EEEeCCCCEEEEEeC---C-----CC
Q 018474          160 ------YKDMAEGKPYGQLRKYDPKLKETTVLHE----------GFYFANG---IALSKNEDFVVVCES---W-----KF  212 (355)
Q Consensus       160 ------~~~~~~~~~~g~l~~~dp~~~~~~~~~~----------~~~~png---i~~~~dg~~l~v~~~---~-----~~  212 (355)
                            ...++.-+. +.++.+|..+++.+....          ....|.|   +++++|++.+|++..   .     .+
T Consensus       216 P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~  294 (368)
T 1mda_H          216 AAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAE  294 (368)
T ss_dssp             CEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEE
T ss_pred             ccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCC
Confidence                  000011111 567777875443222211          1234556   899999999999754   3     35


Q ss_pred             eEEEEEeCCCCCcceeEecccCCCCcCceEECCCCC-EEEEee-cCCchhhHhhhcchhHHHHHHhccchhhcccCCCCC
Q 018474          213 RCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGS-FWIGLI-KMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSD  290 (355)
Q Consensus       213 ~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (355)
                      ++.++|.+..+.  ...+  ..+..|.++.+++||+ +|+++. ..                                  
T Consensus       295 ~~~ViD~~t~~v--v~~i--~vg~~p~gi~~s~Dg~~l~va~~~~~----------------------------------  336 (368)
T 1mda_H          295 NTSSVTASVGQT--SGPI--SNGHDSDAIIAAQDGASDNYANSAGT----------------------------------  336 (368)
T ss_dssp             EEEEEESSSCCE--EECC--EEEEEECEEEECCSSSCEEEEEETTT----------------------------------
T ss_pred             CEEEEECCCCeE--EEEE--ECCCCcceEEECCCCCEEEEEccCCC----------------------------------
Confidence            778898754321  1111  1223589999999996 899887 32                                  


Q ss_pred             CceEEEEEeCCCCeEEEEEEC
Q 018474          291 AGARVVKVDGNDGKIIRDFND  311 (355)
Q Consensus       291 ~~~~v~~~~~~~g~~~~~~~~  311 (355)
                        +.|..+|.++++.+..+..
T Consensus       337 --~~VsVID~~t~kvv~~I~v  355 (368)
T 1mda_H          337 --EVLDIYDAASDQDQSSVEL  355 (368)
T ss_dssp             --TEEEEEESSSCEEEEECCC
T ss_pred             --CeEEEEECCCCcEEEEEEC
Confidence              4689999878888888764

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.89  E-value=1.2e-06  Score=87.72  Aligned_cols=252  Identities=15%  Similarity=0.133  Sum_probs=146.9

Q ss_pred             CCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEc-CC-----C-e
Q 018474           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT-EE-----G-V  124 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~-~~-----g-~  124 (355)
                      ..+.++++.++ +.+.++ .++.|+.+|..+++...+......+. .+++.++|+..+....+.|+.++ .+     + .
T Consensus        82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~~l~~~~~~~~-~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~  158 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKVTYLFDTNEETA-SLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRA  158 (706)
T ss_dssp             CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEEEEEECCTTCCT-TCEECTTSSEEEEEETTEEEEEECBCTTSCCCCC
T ss_pred             cCceeEEECCC-CeEEEE-ECCEEEEEECCCCceEEccCCccccc-CCcCCCCCCEEEEEECCeEEEEecCcccccCCCc
Confidence            45788999965 666655 46899999998888776655445677 89999999754444455688887 46     7 4


Q ss_pred             EEEcCCc-C--------------CcccEEEccCCc-EEEEeCCCCCCCcccc---------------ccc-cccCCCCeE
Q 018474          125 EAIVPDA-S--------------FTNDVIAASDGT-LYFTVASTKYTPTDFY---------------KDM-AEGKPYGQL  172 (355)
Q Consensus       125 ~~~~~~~-~--------------~~~~l~~d~dG~-ly~~d~~~~~~~~~~~---------------~~~-~~~~~~g~l  172 (355)
                      ..+.... .              .+.++.++|||+ |.++.... -.+....               +.. -.......+
T Consensus       159 ~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~-~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l  237 (706)
T 2z3z_A          159 IAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQ-SMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTV  237 (706)
T ss_dssp             EESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEEC-TTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEE
T ss_pred             EEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECC-CCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEE
Confidence            4433221 1              158899999995 55543110 0000000               000 001123579


Q ss_pred             EEEeCCCCeEEEeecc---ccccccEEEeCCCCEEEEEeCCC----CeEEEEEeCCCCCcceeEec-ccCCC---CcCce
Q 018474          173 RKYDPKLKETTVLHEG---FYFANGIALSKNEDFVVVCESWK----FRCRRYWLKGDRAGILDAFI-ENLPG---GPDNI  241 (355)
Q Consensus       173 ~~~dp~~~~~~~~~~~---~~~pngi~~~~dg~~l~v~~~~~----~~i~~~~~~~~~~~~~~~~~-~~~~g---~p~~i  241 (355)
                      +.||.++++...+...   ......++++|||+.++++....    ..|+.+++++..  ..+.+. +....   ....+
T Consensus       238 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~--~~~~~~~~~~~~~~~~~~~~  315 (706)
T 2z3z_A          238 GIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGR--FVRTLFVETDKHYVEPLHPL  315 (706)
T ss_dssp             EEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCC--EEEEEEEEECSSCCCCCSCC
T ss_pred             EEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCc--eeeEEEEccCCCeECccCCc
Confidence            9999988887655422   12345789999999888865433    378888875431  222222 11111   12457


Q ss_pred             EECC--CCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccc
Q 018474          242 NLAP--DGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISF  319 (355)
Q Consensus       242 ~~d~--~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~  319 (355)
                      .+++  +|++.++....                                  ....|+.++. +++....++....    .
T Consensus       316 ~~sp~~dg~~l~~~~~~----------------------------------g~~~l~~~~~-~~~~~~~l~~~~~----~  356 (706)
T 2z3z_A          316 TFLPGSNNQFIWQSRRD----------------------------------GWNHLYLYDT-TGRLIRQVTKGEW----E  356 (706)
T ss_dssp             EECTTCSSEEEEEECTT----------------------------------SSCEEEEEET-TSCEEEECCCSSS----C
T ss_pred             eeecCCCCEEEEEEccC----------------------------------CccEEEEEEC-CCCEEEecCCCCe----E
Confidence            8888  88755444321                                  1235888887 7766666644322    1


Q ss_pred             eeE-EEE--eCCEEEEeecCCC----eEEEeeCCCC
Q 018474          320 VTS-AAE--FDGNLYLASLQSN----FIGILPLDGP  348 (355)
Q Consensus       320 ~~~-~~~--~~g~L~v~~~~~~----~i~~~~~~~~  348 (355)
                      +.. +..  +++.||+++...+    .|.++++.+.
T Consensus       357 v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~  392 (706)
T 2z3z_A          357 VTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGG  392 (706)
T ss_dssp             EEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCC
T ss_pred             EEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCC
Confidence            222 232  3456777766544    6777766543

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.88  E-value=4e-07  Score=84.26  Aligned_cols=136  Identities=11%  Similarity=0.002  Sum_probs=92.7

Q ss_pred             eCCCeEEEEec-----CCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeC----------CCcEEEEcC-CC
Q 018474           61 VSKGALYTATR-----DGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDN----------EKGLLKVTE-EG  123 (355)
Q Consensus        61 ~~~g~l~~~~~-----~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~----------~~gl~~~~~-~g  123 (355)
                      |+++.+|+.+.     ++.|..+|..+++.......+..|  +++++++|+ |||++.          .+.+..+|. ++
T Consensus        42 pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~  119 (386)
T 3sjl_D           42 PDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL  119 (386)
T ss_dssp             CCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC
Confidence            46788999876     578999999998876555555666  499999986 899873          123777784 55


Q ss_pred             --eEEEcCC-------cCCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecc----c
Q 018474          124 --VEAIVPD-------ASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG----F  189 (355)
Q Consensus       124 --~~~~~~~-------~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~----~  189 (355)
                        +..+...       ...|..+++++|| .+|+++..                ..+.+..+|.+++++..-..-    .
T Consensus       120 ~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~----------------~~~~VsVID~~t~~vv~tI~v~g~~~  183 (386)
T 3sjl_D          120 LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS----------------PAPAVGVVDLEGKAFKRMLDVPDCYH  183 (386)
T ss_dssp             CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS----------------SSCEEEEEETTTTEEEEEEECCSEEE
T ss_pred             eEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcC----------------CCCeEEEEECCCCcEEEEEECCCcce
Confidence              4444221       1479999999999 69998642                135788999988876433221    1


Q ss_pred             ccccc----EEEeCCCCEEEEEeCCCCeE
Q 018474          190 YFANG----IALSKNEDFVVVCESWKFRC  214 (355)
Q Consensus       190 ~~png----i~~~~dg~~l~v~~~~~~~i  214 (355)
                      ..|.|    +++++||+.+|+.....+.+
T Consensus       184 ~~P~g~~~~~~~~~DG~~~~v~~~~~g~v  212 (386)
T 3sjl_D          184 IFPTAPDTFFMHCRDGSLAKVAFGTEGTP  212 (386)
T ss_dssp             EEEEETTEEEEEETTSCEEEEECCSSSCC
T ss_pred             eecCCCceeEEECCCCCEEEEECCCCCeE
Confidence            23444    47888888666654333444

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=98.88  E-value=2.9e-06  Score=77.08  Aligned_cols=227  Identities=13%  Similarity=0.072  Sum_probs=140.2

Q ss_pred             CceEEEeeCCCeEEEEecCCEEEEEEcCCCe----e-EEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEc-CCC--eE
Q 018474           54 PEDVSVVVSKGALYTATRDGWVKYFILHNET----L-VNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT-EEG--VE  125 (355)
Q Consensus        54 p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~----~-~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~-~~g--~~  125 (355)
                      ..++++.+++..+.++..++.+..++..+++    . ..+....+... .+.+.+++.+..+...+.+..++ .++  ..
T Consensus       100 v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~  178 (340)
T 1got_B          100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLS-CCRFLDDNQIVTSSGDTTCALWDIETGQQTT  178 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEE-EEEEEETTEEEEEETTSCEEEEETTTTEEEE
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEE-EEEECCCCcEEEEECCCcEEEEECCCCcEEE
Confidence            4567788777778888889999999976542    1 12222223455 67777777777776555566666 456  45


Q ss_pred             EEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeec-cccccccEEEeCCCCEE
Q 018474          126 AIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE-GFYFANGIALSKNEDFV  204 (355)
Q Consensus       126 ~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~-~~~~pngi~~~~dg~~l  204 (355)
                      .+......+.++++.++|+++++.+.                 .+.+..||..+++...... .....+.++++|+++.+
T Consensus       179 ~~~~h~~~v~~~~~~~~~~~l~sg~~-----------------d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l  241 (340)
T 1got_B          179 TFTGHTGDVMSLSLAPDTRLFVSGAC-----------------DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF  241 (340)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEET-----------------TSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             EEcCCCCceEEEEECCCCCEEEEEeC-----------------CCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEE
Confidence            55444467889999999988776543                 5678888887775433322 23346789999999955


Q ss_pred             EEEeCCCCeEEEEEeCCCCCcceeEecc-cCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhc
Q 018474          205 VVCESWKFRCRRYWLKGDRAGILDAFIE-NLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISL  283 (355)
Q Consensus       205 ~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (355)
                      .. ....+.|..|++....  ....+.. ........+.++++|++.++....                           
T Consensus       242 ~s-~s~d~~v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d---------------------------  291 (340)
T 1got_B          242 AT-GSDDATCRLFDLRADQ--ELMTYSHDNIICGITSVSFSKSGRLLLAGYDD---------------------------  291 (340)
T ss_dssp             EE-EETTSCEEEEETTTTE--EEEEECCTTCCSCEEEEEECTTSSEEEEEETT---------------------------
T ss_pred             EE-EcCCCcEEEEECCCCc--EEEEEccCCcccceEEEEECCCCCEEEEECCC---------------------------
Confidence            44 4566789889875421  1112210 111113446789999877766542                           


Q ss_pred             ccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeC-CEEEEeecCCCeEE
Q 018474          284 LLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFD-GNLYLASLQSNFIG  341 (355)
Q Consensus       284 ~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~-g~L~v~~~~~~~i~  341 (355)
                               +.|..+|..+++....+..+.+    .+..+.... +++.++......|.
T Consensus       292 ---------~~i~vwd~~~~~~~~~~~~h~~----~v~~~~~s~dg~~l~s~s~D~~i~  337 (340)
T 1got_B          292 ---------FNCNVWDALKADRAGVLAGHDN----RVSCLGVTDDGMAVATGSWDSFLK  337 (340)
T ss_dssp             ---------SEEEEEETTTCCEEEEEECCSS----CEEEEEECTTSSCEEEEETTSCEE
T ss_pred             ---------CeEEEEEcccCcEeeEeecCCC----cEEEEEEcCCCCEEEEEcCCccEE
Confidence                     4577788657777777776554    355555543 44333333344443

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=98.87  E-value=2.2e-06  Score=79.73  Aligned_cols=230  Identities=10%  Similarity=0.060  Sum_probs=143.2

Q ss_pred             EEeeCCCeEEEEecCCEEEEEEcCCCeeEEeec-cCCCcccCeEECCCCCEEEEeCCCc-EEEEc-CCC--eEEEcCCcC
Q 018474           58 SVVVSKGALYTATRDGWVKYFILHNETLVNWKH-IDSQSLLGLTTTKDGGVILCDNEKG-LLKVT-EEG--VEAIVPDAS  132 (355)
Q Consensus        58 ~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~-~~~~p~~gl~~d~~g~L~v~~~~~g-l~~~~-~~g--~~~~~~~~~  132 (355)
                      ++.+++..|.+++.+|.|..++..+++...... ....+. ++++.++|+++++...++ +..++ .++  +..+.....
T Consensus       104 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~  182 (420)
T 3vl1_A          104 TAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEIT-KLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRA  182 (420)
T ss_dssp             EECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEE-EEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSS
T ss_pred             EEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccE-EEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCC
Confidence            345456677788889999999988777655432 234567 899999998655544444 55666 455  555554446


Q ss_pred             CcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecc------------------------
Q 018474          133 FTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG------------------------  188 (355)
Q Consensus       133 ~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~------------------------  188 (355)
                      .+.+++++++|+..++.+.                 .+.+..||..+++.......                        
T Consensus       183 ~v~~~~~~~~~~~l~s~~~-----------------d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  245 (420)
T 3vl1_A          183 TVTDIAIIDRGRNVLSASL-----------------DGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEI  245 (420)
T ss_dssp             CEEEEEEETTTTEEEEEET-----------------TSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGG
T ss_pred             cEEEEEEcCCCCEEEEEcC-----------------CCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeec
Confidence            7889999999976665433                 45677777766654332221                        


Q ss_pred             -ccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCC-EEEEeecCCchhhHhhhc
Q 018474          189 -FYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGS-FWIGLIKMNQTGVRAIQK  266 (355)
Q Consensus       189 -~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~  266 (355)
                       ......++++|+++.++.+ ...+.|..|++....  ....+..........+.++++|. +.++....          
T Consensus       246 ~~~~v~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~d----------  312 (420)
T 3vl1_A          246 STSKKNNLEFGTYGKYVIAG-HVSGVITVHNVFSKE--QTIQLPSKFTCSCNSLTVDGNNANYIYAGYEN----------  312 (420)
T ss_dssp             CCCCCCTTCSSCTTEEEEEE-ETTSCEEEEETTTCC--EEEEECCTTSSCEEEEEECSSCTTEEEEEETT----------
T ss_pred             ccCcccceEEcCCCCEEEEE-cCCCeEEEEECCCCc--eeEEcccccCCCceeEEEeCCCCCEEEEEeCC----------
Confidence             1223456788999866554 456789999985432  12222222223345678888887 55544331          


Q ss_pred             chhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCe-EEEEEECCCCCcccceeEEEEeCCEEEEeecCCCeEEEeeC
Q 018474          267 CREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGK-IIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPL  345 (355)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~-~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~  345 (355)
                                                +.|..+|..+++ .+..+....+.   .++.+...+++++++......|...++
T Consensus       313 --------------------------g~i~vwd~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~l~s~~~d~~v~iw~~  363 (420)
T 3vl1_A          313 --------------------------GMLAQWDLRSPECPVGEFLINEGT---PINNVYFAAGALFVSSGFDTSIKLDII  363 (420)
T ss_dssp             --------------------------SEEEEEETTCTTSCSEEEEESTTS---CEEEEEEETTEEEEEETTTEEEEEEEE
T ss_pred             --------------------------CeEEEEEcCCCcCchhhhhccCCC---CceEEEeCCCCEEEEecCCccEEEEec
Confidence                                      457777864443 24555443322   455555667777777766788888887


Q ss_pred             CC
Q 018474          346 DG  347 (355)
Q Consensus       346 ~~  347 (355)
                      ..
T Consensus       364 ~~  365 (420)
T 3vl1_A          364 SD  365 (420)
T ss_dssp             CC
T ss_pred             cC
Confidence            66

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=98.87  E-value=1.6e-06  Score=79.31  Aligned_cols=232  Identities=11%  Similarity=0.075  Sum_probs=144.0

Q ss_pred             CceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEe---ec--cCCCcccCeEECCCCCEEEEeCCCc-EEEEc-CCC--e
Q 018474           54 PEDVSVVVSKGALYTATRDGWVKYFILHNETLVNW---KH--IDSQSLLGLTTTKDGGVILCDNEKG-LLKVT-EEG--V  124 (355)
Q Consensus        54 p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~---~~--~~~~p~~gl~~d~~g~L~v~~~~~g-l~~~~-~~g--~  124 (355)
                      -.++++. .++.+.+++.+|.|..+|..+++....   ..  ..+.+. ++++.++|+++++...++ +..++ .++  +
T Consensus        85 v~~~~~s-~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~-~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~  162 (344)
T 4gqb_B           85 VADLTWV-GERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVS-TVSVLSSGTQAVSGSKDICIKVWDLAQQVVL  162 (344)
T ss_dssp             EEEEEEE-TTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEE-EEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred             EEEEEEe-CCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEE-EEEECCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence            3568888 567888999999999999877753221   11  123467 899999998766655555 44555 466  5


Q ss_pred             EEEcCCcCCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEE-eec--cccccccEEEeCC
Q 018474          125 EAIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV-LHE--GFYFANGIALSKN  200 (355)
Q Consensus       125 ~~~~~~~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~-~~~--~~~~pngi~~~~d  200 (355)
                      ..+......++.+++.+++ +++++.+.                 .+.+..||..+++... +..  .......++++|+
T Consensus       163 ~~~~~h~~~V~~~~~~~~~~~~l~s~s~-----------------D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~  225 (344)
T 4gqb_B          163 SSYRAHAAQVTCVAASPHKDSVFLSCSE-----------------DNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQ  225 (344)
T ss_dssp             EEECCCSSCEEEEEECSSCTTEEEEEET-----------------TSCEEEEETTSSSCEEECC----CCCEEEEEECSS
T ss_pred             EEEcCcCCceEEEEecCCCCCceeeecc-----------------ccccccccccccceeeeeecceeeccceeeeecCC
Confidence            5555444678899999987 57766433                 4568888887765432 211  1223567889987


Q ss_pred             CCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCC-EEEEeecCCchhhHhhhcchhHHHHHHhccc
Q 018474          201 EDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGS-FWIGLIKMNQTGVRAIQKCREKWELLDAYPG  279 (355)
Q Consensus       201 g~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (355)
                      +..++++....+.|..|+++..+.  ...+. ........+++.++|. +.++....                       
T Consensus       226 ~~~~l~sg~~dg~v~~wd~~~~~~--~~~~~-~h~~~v~~v~fsp~g~~~lasgs~D-----------------------  279 (344)
T 4gqb_B          226 QSEVFVFGDENGTVSLVDTKSTSC--VLSSA-VHSQCVTGLVFSPHSVPFLASLSED-----------------------  279 (344)
T ss_dssp             CTTEEEEEETTSEEEEEESCC--C--CEEEE-CCSSCEEEEEECSSSSCCEEEEETT-----------------------
T ss_pred             CCcceEEeccCCcEEEEECCCCcE--EEEEc-CCCCCEEEEEEccCCCeEEEEEeCC-----------------------
Confidence            665777766778899999854321  22222 2222345577888884 44443321                       


Q ss_pred             hhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEe--CCEEEEeecCCCeEEEeeCCCC
Q 018474          280 LISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF--DGNLYLASLQSNFIGILPLDGP  348 (355)
Q Consensus       280 ~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~--~g~L~v~~~~~~~i~~~~~~~~  348 (355)
                                   +.|..+|.+.++.+ .+..+.+    .+..+...  +.+|..+.-....|....+++.
T Consensus       280 -------------~~i~vwd~~~~~~~-~~~~H~~----~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~  332 (344)
T 4gqb_B          280 -------------CSLAVLDSSLSELF-RSQAHRD----FVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE  332 (344)
T ss_dssp             -------------SCEEEECTTCCEEE-EECCCSS----CEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred             -------------CeEEEEECCCCcEE-EEcCCCC----CEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence                         34777787455543 3434333    56667764  3456665555778888777654

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=98.86  E-value=7.8e-07  Score=82.35  Aligned_cols=182  Identities=9%  Similarity=0.017  Sum_probs=118.0

Q ss_pred             CCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccC-CC---------------cccCeEECCCCCEEEEeCCC
Q 018474           51 VNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHID-SQ---------------SLLGLTTTKDGGVILCDNEK  114 (355)
Q Consensus        51 ~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~-~~---------------p~~gl~~d~~g~L~v~~~~~  114 (355)
                      -....++++.+++..++++..+|.|..++..+++........ ..               +. .+.+.+++.++++...+
T Consensus       149 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g  227 (425)
T 1r5m_A          149 RAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGV-DVEWVDDDKFVIPGPKG  227 (425)
T ss_dssp             CSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBS-CCEEEETTEEEEECGGG
T ss_pred             CccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceee-EEEEcCCCEEEEEcCCC
Confidence            355678899877777888889999999999887654332221 11               56 88888888887777665


Q ss_pred             cEEEEc-CCC--eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee-cccc
Q 018474          115 GLLKVT-EEG--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFY  190 (355)
Q Consensus       115 gl~~~~-~~g--~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~-~~~~  190 (355)
                      .+..++ .++  ...+......+..++++++|+++++...                 .+.+..||..+++..... ....
T Consensus       228 ~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----------------d~~i~i~d~~~~~~~~~~~~~~~  290 (425)
T 1r5m_A          228 AIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASD-----------------DGTLRIWHGGNGNSQNCFYGHSQ  290 (425)
T ss_dssp             CEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEET-----------------TSCEEEECSSSBSCSEEECCCSS
T ss_pred             eEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcC-----------------CCEEEEEECCCCccceEecCCCc
Confidence            677777 444  5555444467888999999976665432                 456888887665432222 2233


Q ss_pred             ccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474          191 FANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       191 ~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      ....+++++++  .+++....+.|..|+++...  ....+. ........+.++++|++.++...
T Consensus       291 ~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~--~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~  350 (425)
T 1r5m_A          291 SIVSASWVGDD--KVISCSMDGSVRLWSLKQNT--LLALSI-VDGVPIFAGRISQDGQKYAVAFM  350 (425)
T ss_dssp             CEEEEEEETTT--EEEEEETTSEEEEEETTTTE--EEEEEE-CTTCCEEEEEECTTSSEEEEEET
T ss_pred             cEEEEEECCCC--EEEEEeCCCcEEEEECCCCc--EeEecc-cCCccEEEEEEcCCCCEEEEEEC
Confidence            45678999998  44445567889999975422  112221 22233556788888986666544

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=98.86  E-value=9.6e-06  Score=73.15  Aligned_cols=185  Identities=11%  Similarity=0.095  Sum_probs=115.4

Q ss_pred             CCCCCCceEEEeeC----CCeEEEEecCCEEEEEEcCCCeeEE-eecc--CCCcccCeEECCCCCEEEEeCCCcEE-EEc
Q 018474           49 GCVNHPEDVSVVVS----KGALYTATRDGWVKYFILHNETLVN-WKHI--DSQSLLGLTTTKDGGVILCDNEKGLL-KVT  120 (355)
Q Consensus        49 ~~~~~p~~i~~d~~----~g~l~~~~~~g~i~~~~~~~g~~~~-~~~~--~~~p~~gl~~d~~g~L~v~~~~~gl~-~~~  120 (355)
                      +.-..-.++++.++    +..|..++.|+.|..++..+++... +...  ..... ++.+.+++.+.++...++.+ .++
T Consensus        30 ~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~-~~~~~~~~~~l~s~s~D~~i~lWd  108 (321)
T 3ow8_A           30 AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVV-SVDISHTLPIAASSSLDAHIRLWD  108 (321)
T ss_dssp             SSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEE-EEEECSSSSEEEEEETTSEEEEEE
T ss_pred             cCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEE-EEEECCCCCEEEEEeCCCcEEEEE
Confidence            33344567777532    4567888899999888876665432 2211  22355 77888888877765555544 445


Q ss_pred             -CCC--eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEe-eccccccccEE
Q 018474          121 -EEG--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL-HEGFYFANGIA  196 (355)
Q Consensus       121 -~~g--~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~-~~~~~~pngi~  196 (355)
                       .++  ++.+......+..++++|+|+..++...                 .+.+..||.++++.... .........++
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~-----------------dg~v~i~~~~~~~~~~~~~~~~~~v~~~~  171 (321)
T 3ow8_A          109 LENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTH-----------------VGKVNIFGVESGKKEYSLDTRGKFILSIA  171 (321)
T ss_dssp             TTTTEEEEEEECCTTCCCCEEECTTSSEEEEECT-----------------TSEEEEEETTTCSEEEEEECSSSCEEEEE
T ss_pred             CCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcC-----------------CCcEEEEEcCCCceeEEecCCCceEEEEE
Confidence             455  5555444456778999999987776443                 56788888876654432 22233456789


Q ss_pred             EeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474          197 LSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       197 ~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      ++||++.+..+ ...+.|..|++...+  ....+. ........+.++++|++.++...
T Consensus       172 ~spdg~~lasg-~~dg~i~iwd~~~~~--~~~~~~-~h~~~v~~l~~spd~~~l~s~s~  226 (321)
T 3ow8_A          172 YSPDGKYLASG-AIDGIINIFDIATGK--LLHTLE-GHAMPIRSLTFSPDSQLLVTASD  226 (321)
T ss_dssp             ECTTSSEEEEE-ETTSCEEEEETTTTE--EEEEEC-CCSSCCCEEEECTTSCEEEEECT
T ss_pred             ECCCCCEEEEE-cCCCeEEEEECCCCc--EEEEEc-ccCCceeEEEEcCCCCEEEEEcC
Confidence            99999966555 456789899875432  122222 22233466889999987776544

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=98.86  E-value=3e-06  Score=79.24  Aligned_cols=152  Identities=6%  Similarity=0.005  Sum_probs=102.9

Q ss_pred             CCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeec-cCCCcccCeEECCCCCEEEEeCCCc-EEEEcC-CC--eE
Q 018474           51 VNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH-IDSQSLLGLTTTKDGGVILCDNEKG-LLKVTE-EG--VE  125 (355)
Q Consensus        51 ~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~-~~~~p~~gl~~d~~g~L~v~~~~~g-l~~~~~-~g--~~  125 (355)
                      -....++++.|.+..+..++.+|.|..+|..+++...... ....+. +++++++|++.++...++ +..++. ++  +.
T Consensus       108 ~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~-~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~  186 (410)
T 1vyh_C          108 RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQ-DISFDHSGKLLASCSADMTIKLWDFQGFECIR  186 (410)
T ss_dssp             SSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEE-EEEECTTSSEEEEEETTSCCCEEETTSSCEEE
T ss_pred             CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEE-EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE
Confidence            3455688899777778888999999999998886544332 234466 899999998766554545 444453 44  44


Q ss_pred             EEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEE-EeeccccccccEEEeCCCCEE
Q 018474          126 AIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT-VLHEGFYFANGIALSKNEDFV  204 (355)
Q Consensus       126 ~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~-~~~~~~~~pngi~~~~dg~~l  204 (355)
                      .+......+.++++.++|...++.+.                 .+.+..||..+++.. .+.........+++++|++.+
T Consensus       187 ~~~~h~~~V~~v~~~p~~~~l~s~s~-----------------D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l  249 (410)
T 1vyh_C          187 TMHGHDHNVSSVSIMPNGDHIVSASR-----------------DKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLI  249 (410)
T ss_dssp             CCCCCSSCEEEEEECSSSSEEEEEET-----------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEE
T ss_pred             EEcCCCCCEEEEEEeCCCCEEEEEeC-----------------CCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEE
Confidence            44433467889999999987666433                 567888898777543 333223334678899999854


Q ss_pred             EEEeCCCCeEEEEEeCC
Q 018474          205 VVCESWKFRCRRYWLKG  221 (355)
Q Consensus       205 ~v~~~~~~~i~~~~~~~  221 (355)
                       ++....+.|..|++..
T Consensus       250 -~s~s~D~~v~vwd~~~  265 (410)
T 1vyh_C          250 -ASCSNDQTVRVWVVAT  265 (410)
T ss_dssp             -EEEETTSCEEEEETTT
T ss_pred             -EEEcCCCeEEEEECCC
Confidence             4445567888888754

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=98.86  E-value=3.4e-06  Score=75.36  Aligned_cols=236  Identities=8%  Similarity=0.055  Sum_probs=140.3

Q ss_pred             CCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeec-cCCCcccCeEECCCCCEEEEeCCCc-EEEEc-CCC--eE
Q 018474           51 VNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH-IDSQSLLGLTTTKDGGVILCDNEKG-LLKVT-EEG--VE  125 (355)
Q Consensus        51 ~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~-~~~~p~~gl~~d~~g~L~v~~~~~g-l~~~~-~~g--~~  125 (355)
                      -..-.++++.|++..+..+..+|.|..+|..+++...... ...... .+++.++++++++...++ +..++ .++  +.
T Consensus        13 ~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~   91 (304)
T 2ynn_A           13 SDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVR-AGKFIARKNWIIVGSDDFRIRVFNYNTGEKVV   91 (304)
T ss_dssp             CSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE-EEEEEGGGTEEEEEETTSEEEEEETTTCCEEE
T ss_pred             CCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEE-EEEEeCCCCEEEEECCCCEEEEEECCCCcEEE
Confidence            3556789999877788889999999999998876543322 233455 788888888666554555 44455 455  55


Q ss_pred             EEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCC-eEEEeec-cccccccEEEeC-CCC
Q 018474          126 AIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLK-ETTVLHE-GFYFANGIALSK-NED  202 (355)
Q Consensus       126 ~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~-~~~~~~~-~~~~pngi~~~~-dg~  202 (355)
                      .+......++++++.|++.+.++.+.                 .+.+..||.+++ ....... .......++++| +++
T Consensus        92 ~~~~h~~~v~~~~~~~~~~~l~sgs~-----------------D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~  154 (304)
T 2ynn_A           92 DFEAHPDYIRSIAVHPTKPYVLSGSD-----------------DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS  154 (304)
T ss_dssp             EEECCSSCEEEEEECSSSSEEEEEET-----------------TSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTT
T ss_pred             EEeCCCCcEEEEEEcCCCCEEEEECC-----------------CCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCC
Confidence            55544467899999999987776443                 456777876555 3322222 223356789998 556


Q ss_pred             EEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEE--CCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccch
Q 018474          203 FVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINL--APDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGL  280 (355)
Q Consensus       203 ~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~--d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (355)
                       ++++....+.|..|++..... ... +..........+.+  .+++.+.++....                        
T Consensus       155 -~l~sgs~D~~v~iwd~~~~~~-~~~-~~~~~~~~v~~~~~~~~~~~~~l~s~s~D------------------------  207 (304)
T 2ynn_A          155 -TFASGCLDRTVKVWSLGQSTP-NFT-LTTGQERGVNYVDYYPLPDKPYMITASDD------------------------  207 (304)
T ss_dssp             -EEEEEETTSEEEEEETTCSSC-SEE-EECCCTTCEEEEEECCSTTCCEEEEEETT------------------------
T ss_pred             -EEEEEeCCCeEEEEECCCCCc-cce-eccCCcCcEEEEEEEEcCCCCEEEEEcCC------------------------
Confidence             555556678899998743221 111 11111111112233  3466666655432                        


Q ss_pred             hhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeC-CEEEEeecCCCeEEEeeCCC
Q 018474          281 ISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFD-GNLYLASLQSNFIGILPLDG  347 (355)
Q Consensus       281 ~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~-g~L~v~~~~~~~i~~~~~~~  347 (355)
                                  +.|..+|.++++.+..+..+.+    .++.+.... +.+.++......|...++.+
T Consensus       208 ------------~~i~iWd~~~~~~~~~~~~h~~----~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~  259 (304)
T 2ynn_A          208 ------------LTIKIWDYQTKSCVATLEGHMS----NVSFAVFHPTLPIIISGSEDGTLKIWNSST  259 (304)
T ss_dssp             ------------SEEEEEETTTTEEEEEEECCSS----CEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred             ------------CeEEEEeCCCCccceeeCCCCC----CEEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence                        3566667656777777765543    344444443 44444444456666666544

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.86  E-value=1.5e-07  Score=84.66  Aligned_cols=161  Identities=13%  Similarity=0.132  Sum_probs=105.3

Q ss_pred             CCcccEEEcc-CCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEe-eccc-------cccccEEE---eC
Q 018474          132 SFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL-HEGF-------YFANGIAL---SK  199 (355)
Q Consensus       132 ~~~~~l~~d~-dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~-~~~~-------~~pngi~~---~~  199 (355)
                      .+|.+...|+ +|.+|+++..                 .+.|+++||.++..+.+ ..++       ..+.|+.+   ++
T Consensus        13 ~yPE~~~wd~~~g~~~vs~l~-----------------~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~   75 (334)
T 2p9w_A           13 LTPEDTIYDRTRQVFYQSNLY-----------------KGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN   75 (334)
T ss_dssp             CCCSCEEEETTTTEEEEEETT-----------------TTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS
T ss_pred             cCCcCccCcCCCCEEEEEecc-----------------CCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC
Confidence            6899999986 6899999865                 67899999986654443 2322       24689999   79


Q ss_pred             CCCEEEE-EeC------------CCCeEEEEEeCCCCCcceeEecc------c-------CCCCcCceEECCCCCEEEEe
Q 018474          200 NEDFVVV-CES------------WKFRCRRYWLKGDRAGILDAFIE------N-------LPGGPDNINLAPDGSFWIGL  253 (355)
Q Consensus       200 dg~~l~v-~~~------------~~~~i~~~~~~~~~~~~~~~~~~------~-------~~g~p~~i~~d~~G~lwv~~  253 (355)
                      +++ ||+ ++.            ....|.+|++++...++....++      .       ..+.++++++|++|+.||+.
T Consensus        76 ~gr-L~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~  154 (334)
T 2p9w_A           76 SKR-LFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAF  154 (334)
T ss_dssp             CCE-EEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEE
T ss_pred             CCc-EEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeC
Confidence            865 666 542            35789999987211111111111      1       22347889999999999976


Q ss_pred             ecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEE-C-CCCCcccceeEEEEe-CC-E
Q 018474          254 IKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFN-D-PDATYISFVTSAAEF-DG-N  329 (355)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~-~-~~g~~~~~~~~~~~~-~g-~  329 (355)
                      ..+                                   .+.|++++| +|+....+. . +........++++.. +| .
T Consensus       155 s~~-----------------------------------~~~I~rV~p-dG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~  198 (334)
T 2p9w_A          155 ALG-----------------------------------MPAIARVSA-DGKTVSTFAWESGNGGQRPGYSGITFDPHSNK  198 (334)
T ss_dssp             EES-----------------------------------SCEEEEECT-TSCCEEEEEECCCCSSSCCSCSEEEEETTTTE
T ss_pred             CCC-----------------------------------CCeEEEEeC-CCCEEeeeeecCCCcccccCcceEEEeCCCCE
Confidence            541                                   036999999 998555442 2 222222345566665 34 5


Q ss_pred             EEEeecCCCeEEEeeCCC
Q 018474          330 LYLASLQSNFIGILPLDG  347 (355)
Q Consensus       330 L~v~~~~~~~i~~~~~~~  347 (355)
                      |++... ..+|.++++..
T Consensus       199 Liv~~~-~g~L~~fD~~~  215 (334)
T 2p9w_A          199 LIAFGG-PRALTAFDVSK  215 (334)
T ss_dssp             EEEESS-SSSEEEEECSS
T ss_pred             EEEEcC-CCeEEEEcCCC
Confidence            666665 99999999873

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=98.85  E-value=4.2e-06  Score=74.88  Aligned_cols=181  Identities=14%  Similarity=0.127  Sum_probs=113.5

Q ss_pred             CCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCee----EEee--ccCCCcccCeEECCCCCEEE-EeCCCcEEEEc-CC
Q 018474           51 VNHPEDVSVVVSKGALYTATRDGWVKYFILHNETL----VNWK--HIDSQSLLGLTTTKDGGVIL-CDNEKGLLKVT-EE  122 (355)
Q Consensus        51 ~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~----~~~~--~~~~~p~~gl~~d~~g~L~v-~~~~~gl~~~~-~~  122 (355)
                      -....++++.+++..++++. +|.|..++..+++.    ..+.  .....+. .+++.+++++++ +...+.+..++ .+
T Consensus        51 ~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~~~d~~~  128 (337)
T 1gxr_A           51 GEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIR-SCKLLPDGCTLIVGGEASTLSIWDLAA  128 (337)
T ss_dssp             SSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEE-EEEECTTSSEEEEEESSSEEEEEECCC
T ss_pred             CCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEE-EEEEcCCCCEEEEEcCCCcEEEEECCC
Confidence            45678899996666666666 99999999866532    2221  2234466 899999987554 44344466666 33


Q ss_pred             C-e---EEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeec-cccccccEEE
Q 018474          123 G-V---EAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE-GFYFANGIAL  197 (355)
Q Consensus       123 g-~---~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~-~~~~pngi~~  197 (355)
                      + .   ..+......+.+++++++|+..++...                 .+.+..||..+++...... .......+++
T Consensus       129 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----------------dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~  191 (337)
T 1gxr_A          129 PTPRIKAELTSSAPACYALAISPDSKVCFSCCS-----------------DGNIAVWDLHNQTLVRQFQGHTDGASCIDI  191 (337)
T ss_dssp             C--EEEEEEECSSSCEEEEEECTTSSEEEEEET-----------------TSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred             CCcceeeecccCCCceEEEEECCCCCEEEEEeC-----------------CCcEEEEeCCCCceeeeeecccCceEEEEE
Confidence            3 1   222233356788999999876555332                 4578889987776543333 2344678899


Q ss_pred             eCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474          198 SKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       198 ~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      +|+++.++.+. ..+.|..|+++..+.  ...+  ...+....+.++++|++.+....
T Consensus       192 ~~~~~~l~~~~-~dg~i~~~d~~~~~~--~~~~--~~~~~v~~~~~s~~~~~l~~~~~  244 (337)
T 1gxr_A          192 SNDGTKLWTGG-LDNTVRSWDLREGRQ--LQQH--DFTSQIFSLGYCPTGEWLAVGME  244 (337)
T ss_dssp             CTTSSEEEEEE-TTSEEEEEETTTTEE--EEEE--ECSSCEEEEEECTTSSEEEEEET
T ss_pred             CCCCCEEEEEe-cCCcEEEEECCCCce--Eeee--cCCCceEEEEECCCCCEEEEEcC
Confidence            99999666654 567899999854321  1111  22333566788888886665543

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=98.83  E-value=2.9e-06  Score=78.18  Aligned_cols=238  Identities=10%  Similarity=0.012  Sum_probs=146.8

Q ss_pred             CCCceEEEeeC----C---CeEEEEecCCEEEEEEcCCCe------eEEeecc-----CCCcccCeEEC----CCCCE-E
Q 018474           52 NHPEDVSVVVS----K---GALYTATRDGWVKYFILHNET------LVNWKHI-----DSQSLLGLTTT----KDGGV-I  108 (355)
Q Consensus        52 ~~p~~i~~d~~----~---g~l~~~~~~g~i~~~~~~~g~------~~~~~~~-----~~~p~~gl~~d----~~g~L-~  108 (355)
                      ....++++.++    +   ..|+++..+|.|..++..+++      ...+...     ...+. ++++.    ++++. +
T Consensus        63 ~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~l  141 (397)
T 1sq9_A           63 SGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFW-ALKWGASNDRLLSHRL  141 (397)
T ss_dssp             TCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEE-EEEEECCC----CEEE
T ss_pred             CcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEE-EEEEeeccCCCCceEE
Confidence            45578889865    5   677788889999999886665      4444322     24566 88998    88875 5


Q ss_pred             EE-eCCCcEEEEc-CC------C--eE-----EEcC-------CcCCcccEEEccCCcEEEEeCCCCCCCcccccccccc
Q 018474          109 LC-DNEKGLLKVT-EE------G--VE-----AIVP-------DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEG  166 (355)
Q Consensus       109 v~-~~~~gl~~~~-~~------g--~~-----~~~~-------~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~  166 (355)
                      ++ ...+.+..++ .+      +  +.     .+..       ....+.+++++++| ++++...               
T Consensus       142 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~---------------  205 (397)
T 1sq9_A          142 VATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFN---------------  205 (397)
T ss_dssp             EEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECT---------------
T ss_pred             EEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeC---------------
Confidence            54 4444455555 34      4  33     4421       22678899999999 5555433               


Q ss_pred             CCCCeEEEEeCCCCeEEEeecc-------ccccccEEEeCCCCEEEEEeCCC---CeEEEEEeCCCCCcceeEeccc---
Q 018474          167 KPYGQLRKYDPKLKETTVLHEG-------FYFANGIALSKNEDFVVVCESWK---FRCRRYWLKGDRAGILDAFIEN---  233 (355)
Q Consensus       167 ~~~g~l~~~dp~~~~~~~~~~~-------~~~pngi~~~~dg~~l~v~~~~~---~~i~~~~~~~~~~~~~~~~~~~---  233 (355)
                        .+.+..||..+++.......       ......++++|+++.++.+. ..   +.|..|++...+  ....+...   
T Consensus       206 --dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~-~d~~~g~i~i~d~~~~~--~~~~~~~~~~~  280 (397)
T 1sq9_A          206 --NGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAH-DSNSFGCITLYETEFGE--RIGSLSVPTHS  280 (397)
T ss_dssp             --TSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEE-EETTEEEEEEEETTTCC--EEEEECBC---
T ss_pred             --CCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEe-cCCCCceEEEEECCCCc--ccceeccCccc
Confidence              56788999877765443333       34467899999999666554 44   688889875432  12222210   


Q ss_pred             ---------CCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCe
Q 018474          234 ---------LPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGK  304 (355)
Q Consensus       234 ---------~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~  304 (355)
                               .......+.++++|++.++....                                    +.|..+|..+++
T Consensus       281 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------------------------------------g~i~iwd~~~~~  324 (397)
T 1sq9_A          281 SQASLGEFAHSSWVMSLSFNDSGETLCSAGWD------------------------------------GKLRFWDVKTKE  324 (397)
T ss_dssp             -----CCBSBSSCEEEEEECSSSSEEEEEETT------------------------------------SEEEEEETTTTE
T ss_pred             ccccccccccCCcEEEEEECCCCCEEEEEeCC------------------------------------CeEEEEEcCCCc
Confidence                     22334557788889876665431                                    467788876788


Q ss_pred             EEEEEE------CC-----CCC------cccceeEEEEeC-C----------EEEEeecCCCeEEEeeCCC
Q 018474          305 IIRDFN------DP-----DAT------YISFVTSAAEFD-G----------NLYLASLQSNFIGILPLDG  347 (355)
Q Consensus       305 ~~~~~~------~~-----~g~------~~~~~~~~~~~~-g----------~L~v~~~~~~~i~~~~~~~  347 (355)
                      .+..+.      ..     .|.      ....+..+.... +          +++++......|..+++++
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  395 (397)
T 1sq9_A          325 RITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG  395 (397)
T ss_dssp             EEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred             eeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCC
Confidence            888887      32     000      023466666554 3          5555555578888887654

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=98.82  E-value=3.5e-06  Score=77.87  Aligned_cols=230  Identities=11%  Similarity=0.026  Sum_probs=140.6

Q ss_pred             CCceEEEeeCCCeEEEEecCCEEEEEEcCCCe-eEEeeccCCCcccCeEECCCCCEE-EEeCCCcEEEEc-CCC--eEEE
Q 018474           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNET-LVNWKHIDSQSLLGLTTTKDGGVI-LCDNEKGLLKVT-EEG--VEAI  127 (355)
Q Consensus        53 ~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~-~~~~~~~~~~p~~gl~~d~~g~L~-v~~~~~gl~~~~-~~g--~~~~  127 (355)
                      ...++++.+++..|+++..+|.|..++. +++ ...+......+. ++++.++++.+ .+...+.+..++ .++  ...+
T Consensus       110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~~-~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  187 (425)
T 1r5m_A          110 QVTCLAWSHDGNSIVTGVENGELRLWNK-TGALLNVLNFHRAPIV-SVKWNKDGTHIISMDVENVTILWNVISGTVMQHF  187 (425)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCCSCEE-EEEECTTSSEEEEEETTCCEEEEETTTTEEEEEE
T ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEeC-CCCeeeeccCCCccEE-EEEECCCCCEEEEEecCCeEEEEECCCCcEEEEe
Confidence            5678889977777888889999999995 554 344333344567 89999988754 454444566666 455  4444


Q ss_pred             cCCcCC---------------cccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee-ccccc
Q 018474          128 VPDASF---------------TNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFYF  191 (355)
Q Consensus       128 ~~~~~~---------------~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~-~~~~~  191 (355)
                      ......               +.++.+.+++.++++..                  .+.+..||..+++..... .....
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~g~i~~~d~~~~~~~~~~~~~~~~  249 (425)
T 1r5m_A          188 ELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGP------------------KGAIFVYQITEKTPTGKLIGHHGP  249 (425)
T ss_dssp             CCC---------------CCCBSCCEEEETTEEEEECG------------------GGCEEEEETTCSSCSEEECCCSSC
T ss_pred             eccccCccceeeccccCCcceeeEEEEcCCCEEEEEcC------------------CCeEEEEEcCCCceeeeeccCCCc
Confidence            332222               77788888777655422                  457888888766443222 22233


Q ss_pred             cccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHH
Q 018474          192 ANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKW  271 (355)
Q Consensus       192 pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~  271 (355)
                      ...++++++++.++.+. ..+.|..|+++....  ...+. ........+.+.++| ++++....               
T Consensus       250 i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~--~~~~~-~~~~~i~~~~~~~~~-~l~~~~~d---------------  309 (425)
T 1r5m_A          250 ISVLEFNDTNKLLLSAS-DDGTLRIWHGGNGNS--QNCFY-GHSQSIVSASWVGDD-KVISCSMD---------------  309 (425)
T ss_dssp             EEEEEEETTTTEEEEEE-TTSCEEEECSSSBSC--SEEEC-CCSSCEEEEEEETTT-EEEEEETT---------------
T ss_pred             eEEEEECCCCCEEEEEc-CCCEEEEEECCCCcc--ceEec-CCCccEEEEEECCCC-EEEEEeCC---------------
Confidence            46789999999665554 567888888754221  22222 223334567788888 44443321               


Q ss_pred             HHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEe-CCEEEEeecCCCeEEEeeCCC
Q 018474          272 ELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-DGNLYLASLQSNFIGILPLDG  347 (355)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~~~~  347 (355)
                                           +.|..+|..+++....+..+.+    .+..+... ++++++.....+.|..+++..
T Consensus       310 ---------------------~~i~i~d~~~~~~~~~~~~~~~----~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~  361 (425)
T 1r5m_A          310 ---------------------GSVRLWSLKQNTLLALSIVDGV----PIFAGRISQDGQKYAVAFMDGQVNVYDLKK  361 (425)
T ss_dssp             ---------------------SEEEEEETTTTEEEEEEECTTC----CEEEEEECTTSSEEEEEETTSCEEEEECHH
T ss_pred             ---------------------CcEEEEECCCCcEeEecccCCc----cEEEEEEcCCCCEEEEEECCCeEEEEECCC
Confidence                                 4688888757787777766443    34455544 344444333467788877654

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=98.82  E-value=4e-06  Score=75.96  Aligned_cols=248  Identities=11%  Similarity=0.021  Sum_probs=148.6

Q ss_pred             CCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCC------cEEEEc-C-C
Q 018474           51 VNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEK------GLLKVT-E-E  122 (355)
Q Consensus        51 ~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~------gl~~~~-~-~  122 (355)
                      -....++++.+++..+++++.+|.|..+|..+++..........+. .+++.++|+.+++....      .+..++ . .
T Consensus        74 ~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~  152 (369)
T 3zwl_B           74 TGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVK-RVEFSPCGNYFLAILDNVMKNPGSINIYEIERD  152 (369)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEE-EEEECTTSSEEEEEECCBTTBCCEEEEEEEEEC
T ss_pred             CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeE-EEEEccCCCEEEEecCCccCCCCEEEEEEecCC
Confidence            3456788898767778888899999999998886654444455677 89999999866654333      354554 2 2


Q ss_pred             C----eEEEcCCc----------CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCC-CeEEE-ee
Q 018474          123 G----VEAIVPDA----------SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKL-KETTV-LH  186 (355)
Q Consensus       123 g----~~~~~~~~----------~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~-~~~~~-~~  186 (355)
                      .    ........          ..+..++++++|+..++...                 .+.+..||..+ ++... +.
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------dg~i~i~d~~~~~~~~~~~~  215 (369)
T 3zwl_B          153 SATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHK-----------------DGKISKYDVSNNYEYVDSID  215 (369)
T ss_dssp             TTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEET-----------------TSEEEEEETTTTTEEEEEEE
T ss_pred             ccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcC-----------------CCEEEEEECCCCcEeEEEEe
Confidence            1    11111111          26778889998876555322                 56789999876 44332 22


Q ss_pred             ccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeecCCchhhHhhhc
Q 018474          187 EGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQK  266 (355)
Q Consensus       187 ~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~  266 (355)
                      ........++++|+++.++.+. ..+.|..|+++...  ....+.  .......+.++++|++.+.............. 
T Consensus       216 ~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~--~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-  289 (369)
T 3zwl_B          216 LHEKSISDMQFSPDLTYFITSS-RDTNSFLVDVSTLQ--VLKKYE--TDCPLNTAVITPLKEFIILGGGQEAKDVTTTS-  289 (369)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTCC--EEEEEE--CSSCEEEEEECSSSSEEEEEECCC---------
T ss_pred             cCCCceeEEEECCCCCEEEEec-CCceEEEEECCCCc--eeeeec--CCCCceeEEecCCCceEEEeecCCCceEEEEe-
Confidence            2234457899999999666554 56789999985432  122221  22234567788888765555442211100000 


Q ss_pred             chhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEe-CCEEEEeecCCCeEEEeeC
Q 018474          267 CREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-DGNLYLASLQSNFIGILPL  345 (355)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~~  345 (355)
                                           .......+..+|...++.+..+..+.+    .++.+... +++++++....+.|..+++
T Consensus       290 ---------------------~~~~~~~i~~~d~~~~~~~~~~~~~~~----~v~~~~~s~~~~~l~s~~~dg~v~iw~~  344 (369)
T 3zwl_B          290 ---------------------ANEGKFEARFYHKIFEEEIGRVQGHFG----PLNTVAISPQGTSYASGGEDGFIRLHHF  344 (369)
T ss_dssp             --------------------------CEEEEEETTTCCEEEEEECCSS----CEEEEEECTTSSEEEEEETTSEEEEEEE
T ss_pred             ---------------------cCCCcceeEEEecCCCcchhheecccC----cEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence                                 001112467778767788888876554    45556654 3555555545778888776


Q ss_pred             CC
Q 018474          346 DG  347 (355)
Q Consensus       346 ~~  347 (355)
                      ..
T Consensus       345 ~~  346 (369)
T 3zwl_B          345 EK  346 (369)
T ss_dssp             CH
T ss_pred             cc
Confidence            54

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=98.82  E-value=1.7e-05  Score=70.63  Aligned_cols=154  Identities=12%  Similarity=0.097  Sum_probs=103.9

Q ss_pred             CCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeec-cCCCcccCeEECCCCCEEEEeCCCc-EEEEc-CCC--
Q 018474           49 GCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH-IDSQSLLGLTTTKDGGVILCDNEKG-LLKVT-EEG--  123 (355)
Q Consensus        49 ~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~-~~~~p~~gl~~d~~g~L~v~~~~~g-l~~~~-~~g--  123 (355)
                      +.-....++++.+++..++++..+|.|..+|..+++...... ...... .+.+.++++++++...++ +..++ .++  
T Consensus        63 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  141 (312)
T 4ery_A           63 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF-CCNFNPQSNLIVSGSFDESVRIWDVKTGKC  141 (312)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE-EEEECSSSSEEEEEETTSCEEEEETTTCCE
T ss_pred             cCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEE-EEEEcCCCCEEEEEeCCCcEEEEECCCCEE
Confidence            333456788999777778888899999999998776543322 234466 788999988766544444 55666 455  


Q ss_pred             eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEE-eecc-ccccccEEEeCCC
Q 018474          124 VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV-LHEG-FYFANGIALSKNE  201 (355)
Q Consensus       124 ~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~-~~~~-~~~pngi~~~~dg  201 (355)
                      ...+......+..++++++|.+.++.+.                 .+.+..||..+++... +... ......++++|++
T Consensus       142 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (312)
T 4ery_A          142 LKTLPAHSDPVSAVHFNRDGSLIVSSSY-----------------DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG  204 (312)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEET-----------------TSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTS
T ss_pred             EEEecCCCCcEEEEEEcCCCCEEEEEeC-----------------CCcEEEEECCCCceeeEEeccCCCceEEEEECCCC
Confidence            5555444456888999999977665433                 4578888887765432 2221 2233568999999


Q ss_pred             CEEEEEeCCCCeEEEEEeCC
Q 018474          202 DFVVVCESWKFRCRRYWLKG  221 (355)
Q Consensus       202 ~~l~v~~~~~~~i~~~~~~~  221 (355)
                      +.++.+ ...+.|..|++..
T Consensus       205 ~~l~~~-~~d~~i~iwd~~~  223 (312)
T 4ery_A          205 KYILAA-TLDNTLKLWDYSK  223 (312)
T ss_dssp             SEEEEE-ETTTEEEEEETTT
T ss_pred             CEEEEE-cCCCeEEEEECCC
Confidence            966555 4567899999754

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=98.82  E-value=1.6e-06  Score=80.40  Aligned_cols=241  Identities=9%  Similarity=0.066  Sum_probs=149.4

Q ss_pred             CCCceEEEeeCCCeEEEEecCCEEEEEEcCC----C-eeEEeeccCCCcccCeEECCC-CCEEEEeCCCc-EEEEcC-CC
Q 018474           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHN----E-TLVNWKHIDSQSLLGLTTTKD-GGVILCDNEKG-LLKVTE-EG  123 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~----g-~~~~~~~~~~~p~~gl~~d~~-g~L~v~~~~~g-l~~~~~-~g  123 (355)
                      ....++++.+++..|+++..+|.|..++..+    . ....+......+. .+++.++ ++++++...++ +..++. ++
T Consensus        68 ~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~l~s~~~dg~v~iwd~~~~  146 (416)
T 2pm9_A           68 SKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVK-TVKFNAKQDNVLASGGNNGEIFIWDMNKC  146 (416)
T ss_dssp             SCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCC-EEEECSSSTTBEEEECSSSCEEBCBTTTT
T ss_pred             CceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceE-EEEEcCCCCCEEEEEcCCCeEEEEECCCC
Confidence            4466888987777788888999999999865    2 2333322334566 8999887 66655544445 445552 22


Q ss_pred             e------EEEc-----CCcCCcccEEEccC-CcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecc---
Q 018474          124 V------EAIV-----PDASFTNDVIAASD-GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG---  188 (355)
Q Consensus       124 ~------~~~~-----~~~~~~~~l~~d~d-G~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~---  188 (355)
                      .      ..+.     .....+.+++++++ +.++++...                 .+.+..||..+++.......   
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----------------dg~v~iwd~~~~~~~~~~~~~~~  209 (416)
T 2pm9_A          147 TESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGS-----------------SNFASIWDLKAKKEVIHLSYTSP  209 (416)
T ss_dssp             SSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESS-----------------SSCEEEEETTTTEEEEEECCCCC
T ss_pred             ccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcC-----------------CCCEEEEECCCCCcceEEecccc
Confidence            1      2211     11257888999998 577766433                 56788899877765433322   


Q ss_pred             ----ccccccEEEeCCCCEEEEEeCCCC---eEEEEEeCCCCCcceeEecccCCCCcCceEECC-CCCEEEEeecCCchh
Q 018474          189 ----FYFANGIALSKNEDFVVVCESWKF---RCRRYWLKGDRAGILDAFIENLPGGPDNINLAP-DGSFWIGLIKMNQTG  260 (355)
Q Consensus       189 ----~~~pngi~~~~dg~~l~v~~~~~~---~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~-~G~lwv~~~~~~~~~  260 (355)
                          ......++++|++..++++....+   .|..|+++.... ....+..........+.+++ +|++.++....    
T Consensus       210 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d----  284 (416)
T 2pm9_A          210 NSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT-PLQTLNQGHQKGILSLDWCHQDEHLLLSSGRD----  284 (416)
T ss_dssp             SSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS-CSBCCCSCCSSCEEEEEECSSCSSCEEEEESS----
T ss_pred             ccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC-CcEEeecCccCceeEEEeCCCCCCeEEEEeCC----
Confidence                234578999999854555555555   888999864311 11111101223345677877 77766655431    


Q ss_pred             hHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeC-C-EEEEeecCCC
Q 018474          261 VRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFD-G-NLYLASLQSN  338 (355)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~-g-~L~v~~~~~~  338 (355)
                                                      +.|..+|.++++.+..+..+.+    .+..+.... + ++++.....+
T Consensus       285 --------------------------------g~v~~wd~~~~~~~~~~~~~~~----~v~~~~~s~~~~~~l~s~~~d~  328 (416)
T 2pm9_A          285 --------------------------------NTVLLWNPESAEQLSQFPARGN----WCFKTKFAPEAPDLFACASFDN  328 (416)
T ss_dssp             --------------------------------SEEEEECSSSCCEEEEEECSSS----CCCCEEECTTCTTEEEECCSSS
T ss_pred             --------------------------------CCEEEeeCCCCccceeecCCCC----ceEEEEECCCCCCEEEEEecCC
Confidence                                            4577888767888888876554    344455543 4 5666666688


Q ss_pred             eEEEeeCCCCCCC
Q 018474          339 FIGILPLDGPEPQ  351 (355)
Q Consensus       339 ~i~~~~~~~~~~~  351 (355)
                      .|..+++......
T Consensus       329 ~i~iw~~~~~~~~  341 (416)
T 2pm9_A          329 KIEVQTLQNLTNT  341 (416)
T ss_dssp             EEEEEESCCCCCS
T ss_pred             cEEEEEccCCCCC
Confidence            8999998776543

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.81  E-value=1e-06  Score=81.18  Aligned_cols=76  Identities=12%  Similarity=0.176  Sum_probs=54.7

Q ss_pred             CCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCC
Q 018474          169 YGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGS  248 (355)
Q Consensus       169 ~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~  248 (355)
                      .+.++.||.++++......... |.+++++|||+.+|+++.  +.|..||.+..++.....+. .....|.+++++++|+
T Consensus       285 ~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~--~~v~v~D~~t~~l~~~~~i~-~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          285 AAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG--GNVNVYDISQPEPKLLRTIE-GAAEASLQVQFHPVGG  360 (361)
T ss_dssp             CSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS--SCEEEEECSSSSCEEEEEET-TSCSSEEEEEECCCSC
T ss_pred             CceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC--CeEEEEECCCCcceeeEEec-cCCCCcEEEEecCCCC
Confidence            3579999999887654443344 999999999999999874  89999997543222222221 3344689999999985

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.81  E-value=9.4e-07  Score=88.88  Aligned_cols=138  Identities=10%  Similarity=-0.008  Sum_probs=93.2

Q ss_pred             CCCceEEEeeCCCeEEEEec-CC-----EEEEEEcCCCeeEEeeccC-C------------------------CcccCeE
Q 018474           52 NHPEDVSVVVSKGALYTATR-DG-----WVKYFILHNETLVNWKHID-S------------------------QSLLGLT  100 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~-~g-----~i~~~~~~~g~~~~~~~~~-~------------------------~p~~gl~  100 (355)
                      ..+.++++.+++..|+.+.. ++     .|+.+|..+++........ .                        .+. .++
T Consensus        37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~  115 (741)
T 2ecf_A           37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIV-DYQ  115 (741)
T ss_dssp             CCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESC-CCE
T ss_pred             CCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcc-eeE
Confidence            56788999977777888776 77     8999999888766554321 1                        146 889


Q ss_pred             ECCCCCEEEEeCCCcEEEEcC-CC----eEEEcCCcCCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEE
Q 018474          101 TTKDGGVILCDNEKGLLKVTE-EG----VEAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRK  174 (355)
Q Consensus       101 ~d~~g~L~v~~~~~gl~~~~~-~g----~~~~~~~~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~  174 (355)
                      +.+||+..+....+.++.++. ++    .+.+......+.+++++|||+ |.++.                   .+.|+.
T Consensus       116 ~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-------------------~~~i~~  176 (741)
T 2ecf_A          116 WSPDAQRLLFPLGGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-------------------GRNLWV  176 (741)
T ss_dssp             ECTTSSEEEEEETTEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-------------------TTEEEE
T ss_pred             ECCCCCEEEEEeCCcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-------------------CCcEEE
Confidence            999998544433456777773 22    222222225678899999996 54442                   236899


Q ss_pred             EeCCCCeEEEeeccccc-----------------cccEEEeCCCCEEEEEeC
Q 018474          175 YDPKLKETTVLHEGFYF-----------------ANGIALSKNEDFVVVCES  209 (355)
Q Consensus       175 ~dp~~~~~~~~~~~~~~-----------------pngi~~~~dg~~l~v~~~  209 (355)
                      +|.++++...+......                 +.+++++|||+.|+++..
T Consensus       177 ~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~  228 (741)
T 2ecf_A          177 IDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARI  228 (741)
T ss_dssp             EETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEE
T ss_pred             EecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEE
Confidence            99888876655432211                 467999999998888753

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=98.81  E-value=7e-06  Score=76.24  Aligned_cols=238  Identities=8%  Similarity=0.004  Sum_probs=145.5

Q ss_pred             CCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEee-ccCCCcccCeEECCCCCEEEEeCCCcEEEEc-C-CC--eEE
Q 018474           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWK-HIDSQSLLGLTTTKDGGVILCDNEKGLLKVT-E-EG--VEA  126 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~-~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~-~-~g--~~~  126 (355)
                      ....++++.+++..|++++.+|.|..++..+++..... .....+. .+.+++ ..|+.+...+.+..++ . .+  ...
T Consensus       135 ~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~  212 (401)
T 4aez_A          135 TYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVG-CLSWNR-HVLSSGSRSGAIHHHDVRIANHQIGT  212 (401)
T ss_dssp             CCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE-EEEEET-TEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred             CCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceE-EEEECC-CEEEEEcCCCCEEEEecccCcceeeE
Confidence            34568889876777888889999999998777644332 2234456 777742 3445555444455666 3 23  444


Q ss_pred             EcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee-ccccccccEEEeCCCCEEE
Q 018474          127 IVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFYFANGIALSKNEDFVV  205 (355)
Q Consensus       127 ~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~-~~~~~pngi~~~~dg~~l~  205 (355)
                      +......+.+++++++|++.++.+.                 .+.+..||..+++..... ........++++|++..++
T Consensus       213 ~~~~~~~v~~~~~~~~~~~l~s~~~-----------------d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll  275 (401)
T 4aez_A          213 LQGHSSEVCGLAWRSDGLQLASGGN-----------------DNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLL  275 (401)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEET-----------------TSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEE
T ss_pred             EcCCCCCeeEEEEcCCCCEEEEEeC-----------------CCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEE
Confidence            4444467889999999977665433                 457888998776544332 3334467899999887777


Q ss_pred             EEeC--CCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhc
Q 018474          206 VCES--WKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISL  283 (355)
Q Consensus       206 v~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (355)
                      ++..  ..+.|..|++....  ....+  ........+.++++|++.+++.+                            
T Consensus       276 ~~~~gs~d~~i~i~d~~~~~--~~~~~--~~~~~v~~~~~s~~~~~l~~~~g----------------------------  323 (401)
T 4aez_A          276 ATGGGTMDKQIHFWNAATGA--RVNTV--DAGSQVTSLIWSPHSKEIMSTHG----------------------------  323 (401)
T ss_dssp             EEECCTTTCEEEEEETTTCC--EEEEE--ECSSCEEEEEECSSSSEEEEEEC----------------------------
T ss_pred             EEecCCCCCEEEEEECCCCC--EEEEE--eCCCcEEEEEECCCCCeEEEEee----------------------------
Confidence            7754  57889999985432  12222  12233566788999988777643                            


Q ss_pred             ccCCCCCCceEEEEEeCCCCeEEEE--EECCCCCcccceeEEEEe-CCEEEEeecCCCeEEEeeCCCCCC
Q 018474          284 LLPMGSDAGARVVKVDGNDGKIIRD--FNDPDATYISFVTSAAEF-DGNLYLASLQSNFIGILPLDGPEP  350 (355)
Q Consensus       284 ~~~~~~~~~~~v~~~~~~~g~~~~~--~~~~~g~~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~~~~~~~  350 (355)
                            ...+.|..++..+++....  +..+.+    .+..+... ++++.+.......|..+++.+...
T Consensus       324 ------~~dg~i~v~~~~~~~~~~~~~~~~h~~----~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~  383 (401)
T 4aez_A          324 ------FPDNNLSIWSYSSSGLTKQVDIPAHDT----RVLYSALSPDGRILSTAASDENLKFWRVYDGDH  383 (401)
T ss_dssp             ------TTTCEEEEEEEETTEEEEEEEEECCSS----CCCEEEECTTSSEEEEECTTSEEEEEECCC---
T ss_pred             ------cCCCcEEEEecCCccceeEEEecCCCC----CEEEEEECCCCCEEEEEeCCCcEEEEECCCCcc
Confidence                  1124566666534444443  334333    34455554 344444444477888888766543

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=98.80  E-value=1.2e-05  Score=72.69  Aligned_cols=190  Identities=11%  Similarity=0.109  Sum_probs=116.1

Q ss_pred             CCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeec-cCCCcccCeEECCCCCEEEEeCCCc-EEEEc-CCC--
Q 018474           49 GCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH-IDSQSLLGLTTTKDGGVILCDNEKG-LLKVT-EEG--  123 (355)
Q Consensus        49 ~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~-~~~~p~~gl~~d~~g~L~v~~~~~g-l~~~~-~~g--  123 (355)
                      +.-..-.++++.+++..|++++.+|.|..++..+++...... ....+. ++++.++++++++...+| +..++ .++  
T Consensus        30 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  108 (369)
T 3zwl_B           30 GHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIW-SIDVDCFTKYCVTGSADYSIKLWDVSNGQC  108 (369)
T ss_dssp             CCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEE-EEEECTTSSEEEEEETTTEEEEEETTTCCE
T ss_pred             EeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEE-EEEEcCCCCEEEEEeCCCeEEEEECCCCcE
Confidence            445667889999777778888889999999987776544332 334567 899999888666544445 55666 455  


Q ss_pred             eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCe----E--------EEee--ccc
Q 018474          124 VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE----T--------TVLH--EGF  189 (355)
Q Consensus       124 ~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~----~--------~~~~--~~~  189 (355)
                      ...+. ....+..+.++++|...++....            .....+.+..||..+++    +        ..+.  ...
T Consensus       109 ~~~~~-~~~~v~~~~~~~~~~~l~~~~~~------------~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (369)
T 3zwl_B          109 VATWK-SPVPVKRVEFSPCGNYFLAILDN------------VMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGL  175 (369)
T ss_dssp             EEEEE-CSSCEEEEEECTTSSEEEEEECC------------BTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTC
T ss_pred             EEEee-cCCCeEEEEEccCCCEEEEecCC------------ccCCCCEEEEEEecCCccceeecccccceeeeccCCcCc
Confidence            44443 33678889999999766553320            00112455555543221    1        1111  111


Q ss_pred             cccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474          190 YFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       190 ~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      .....++++++++.++.+. ..+.|..|++.... .....+. ...+....+.++++|++.++...
T Consensus       176 ~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~-~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~  238 (369)
T 3zwl_B          176 DAATVAGWSTKGKYIIAGH-KDGKISKYDVSNNY-EYVDSID-LHEKSISDMQFSPDLTYFITSSR  238 (369)
T ss_dssp             CCEEEEEECGGGCEEEEEE-TTSEEEEEETTTTT-EEEEEEE-CCSSCEEEEEECTTSSEEEEEET
T ss_pred             cceeEEEEcCCCCEEEEEc-CCCEEEEEECCCCc-EeEEEEe-cCCCceeEEEECCCCCEEEEecC
Confidence            1456788999999666654 56789999985421 1122221 22333566788899986665543

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=98.80  E-value=5.3e-07  Score=85.76  Aligned_cols=164  Identities=14%  Similarity=0.198  Sum_probs=100.9

Q ss_pred             eEecCCCCCCCceEEEeeCCC-eEEEEecCCEEEEEEcCCCe-eEEee-------cc-----CCCcccCeEECCC----C
Q 018474           44 TKLGEGCVNHPEDVSVVVSKG-ALYTATRDGWVKYFILHNET-LVNWK-------HI-----DSQSLLGLTTTKD----G  105 (355)
Q Consensus        44 ~~~~~~~~~~p~~i~~d~~~g-~l~~~~~~g~i~~~~~~~g~-~~~~~-------~~-----~~~p~~gl~~d~~----g  105 (355)
                      +.+..+ +..|.+|++.+++. ++|++...|+|+++++.... ...+.       ..     .+... +|+++++    +
T Consensus         7 ~~va~g-L~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gll-gia~~P~f~~n~   84 (463)
T 2wg3_C            7 QEVVSG-LRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLL-SLAFHPNYKKNG   84 (463)
T ss_dssp             EEEEEE-ESSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEE-EEEECTTHHHHC
T ss_pred             EEeccC-CCCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcce-eeEeCCCCcCCC
Confidence            455554 78999999995542 69999999999999763221 11111       11     13356 8999875    8


Q ss_pred             CEEEEeCC-------------CcEEEEc-CC--------C-eEEEcC---C--cCCcccEEEccCCcEEEEeCCCCCCCc
Q 018474          106 GVILCDNE-------------KGLLKVT-EE--------G-VEAIVP---D--ASFTNDVIAASDGTLYFTVASTKYTPT  157 (355)
Q Consensus       106 ~L~v~~~~-------------~gl~~~~-~~--------g-~~~~~~---~--~~~~~~l~~d~dG~ly~~d~~~~~~~~  157 (355)
                      .|||+-..             ..|.++. ..        . .+++..   .  ..+...|++++||.||++.........
T Consensus        85 ~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~  164 (463)
T 2wg3_C           85 KLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLD  164 (463)
T ss_dssp             EEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHH
T ss_pred             EEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCC
Confidence            89997431             1455554 11        1 122211   1  145667999999999998754211000


Q ss_pred             cccccccccCCCCeEEEEeCCCC--------------------eEEEeeccccccccEEEeCC-----CC-EEEEEeC
Q 018474          158 DFYKDMAEGKPYGQLRKYDPKLK--------------------ETTVLHEGFYFANGIALSKN-----ED-FVVVCES  209 (355)
Q Consensus       158 ~~~~~~~~~~~~g~l~~~dp~~~--------------------~~~~~~~~~~~pngi~~~~d-----g~-~l~v~~~  209 (355)
                      .....--.....|.|+|+|+++.                    ..+.++.++.+|.|++++++     |+ ++|.+|.
T Consensus       165 ~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~tg~~~G~l~~~~~D~  242 (463)
T 2wg3_C          165 DMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTDININLTILCSDS  242 (463)
T ss_dssp             HHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESSCSSTTCSEEEEEECC
T ss_pred             ccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCCCCCcccceEEEeccc
Confidence            00000001234689999999863                    23567788999999999997     34 5677775

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=98.79  E-value=3.6e-05  Score=69.75  Aligned_cols=185  Identities=11%  Similarity=0.109  Sum_probs=117.0

Q ss_pred             CCCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEe-eccCCCcccCeEECCCCCEEEEeCCCcEE-EEc-CC--
Q 018474           48 EGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNW-KHIDSQSLLGLTTTKDGGVILCDNEKGLL-KVT-EE--  122 (355)
Q Consensus        48 ~~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~-~~~~~~p~~gl~~d~~g~L~v~~~~~gl~-~~~-~~--  122 (355)
                      .+....-.++++.+++..|..++.+|.|..+|..+++.... ........ .+++.++|++.++...++.+ .++ .+  
T Consensus        52 ~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~s~~~d~~v~iw~~~~~~  130 (340)
T 1got_B           52 RGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVM-TCAYAPSGNYVACGGLDNICSIYNLKTRE  130 (340)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEE-EEEECTTSSEEEEEETTCEEEEEETTTCS
T ss_pred             cCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEE-EEEECCCCCEEEEEeCCCeEEEEECccCC
Confidence            45556677889987777788889999999999877754433 22234466 88899999876655455544 444 22  


Q ss_pred             C-eE---EEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecc-ccccccEEE
Q 018474          123 G-VE---AIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG-FYFANGIAL  197 (355)
Q Consensus       123 g-~~---~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~-~~~pngi~~  197 (355)
                      + .+   .+......+..+.+.+++.+..+..                  .+.+..||..+++......+ ......+++
T Consensus       131 ~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~------------------d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~  192 (340)
T 1got_B          131 GNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG------------------DTTCALWDIETGQQTTTFTGHTGDVMSLSL  192 (340)
T ss_dssp             BSCEEEEEEECCSSCEEEEEEEETTEEEEEET------------------TSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred             CcceeEEEecCCCccEEEEEECCCCcEEEEEC------------------CCcEEEEECCCCcEEEEEcCCCCceEEEEE
Confidence            2 22   2333335667777777777554422                  45688889887765433322 234567899


Q ss_pred             eCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474          198 SKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       198 ~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      +|+++ ++++....+.|..|++....  ....+. ........+.+.++|+++++...
T Consensus       193 ~~~~~-~l~sg~~d~~v~~wd~~~~~--~~~~~~-~h~~~v~~v~~~p~~~~l~s~s~  246 (340)
T 1got_B          193 APDTR-LFVSGACDASAKLWDVREGM--CRQTFT-GHESDINAICFFPNGNAFATGSD  246 (340)
T ss_dssp             CTTSS-EEEEEETTSCEEEEETTTCS--EEEEEC-CCSSCEEEEEECTTSSEEEEEET
T ss_pred             CCCCC-EEEEEeCCCcEEEEECCCCe--eEEEEc-CCcCCEEEEEEcCCCCEEEEEcC
Confidence            99998 45555567889999875432  122222 22333456788999987776654

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.78  E-value=8.6e-06  Score=75.37  Aligned_cols=137  Identities=4%  Similarity=-0.133  Sum_probs=92.5

Q ss_pred             CCCeEEEEec--CC---EEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeC----------CCcEEEEcC-CC-
Q 018474           62 SKGALYTATR--DG---WVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDN----------EKGLLKVTE-EG-  123 (355)
Q Consensus        62 ~~g~l~~~~~--~g---~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~----------~~gl~~~~~-~g-  123 (355)
                      ++..+|+...  .+   .|..+|+.+++...-...+..|  ++++++||+ |||++.          .+.+..+|. +. 
T Consensus        31 ~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~  108 (373)
T 2mad_H           31 DGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFL  108 (373)
T ss_pred             CCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCc
Confidence            4567887764  22   7899999888866444444444  899999986 899863          233678884 44 


Q ss_pred             -eEEEcCC-------cCCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecccccccc
Q 018474          124 -VEAIVPD-------ASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANG  194 (355)
Q Consensus       124 -~~~~~~~-------~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~png  194 (355)
                       +..+...       ...|.+++++||| .||+++..                ..+.+..+| ++++....  -+..|.+
T Consensus       109 ~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~----------------~~~~v~viD-~t~~~~~~--~i~~~~~  169 (373)
T 2mad_H          109 PIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFA----------------AGPAVGLVV-QGGSSDDQ--LLSSPTC  169 (373)
T ss_pred             EEEEEECCCccccccCCCccceEECCCCCEEEEEecC----------------CCCeEEEEE-CCCCEEeE--EcCCCce
Confidence             3433322       1468899999999 69988642                134688899 88876432  0233445


Q ss_pred             EEEeCCCCEEEEEeCCCCeEEEEEe
Q 018474          195 IALSKNEDFVVVCESWKFRCRRYWL  219 (355)
Q Consensus       195 i~~~~dg~~l~v~~~~~~~i~~~~~  219 (355)
                      +.+.++++..|++....+.+..++.
T Consensus       170 ~~~~~~~~~~~~~~~~dg~~~~vd~  194 (373)
T 2mad_H          170 YHIHPGAPSTFYLLCAQGGLAKTDH  194 (373)
T ss_pred             EEEEeCCCceEEEEcCCCCEEEEEC
Confidence            6677888778888777778888876

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.78  E-value=1e-06  Score=88.62  Aligned_cols=195  Identities=13%  Similarity=0.088  Sum_probs=114.6

Q ss_pred             CceEEEeeCCCeEEEEecCCEEEEEEcCCC---eeEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEcC-CC-eEEEc
Q 018474           54 PEDVSVVVSKGALYTATRDGWVKYFILHNE---TLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE-EG-VEAIV  128 (355)
Q Consensus        54 p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g---~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~-~g-~~~~~  128 (355)
                      ..++++.|++..|+++.. +.|+.++..++   +...+......+. .+++.+||+..+....+.|+.++. ++ ...+.
T Consensus       111 v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~-~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~  188 (741)
T 2ecf_A          111 IVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFAT-DAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLT  188 (741)
T ss_dssp             SCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEE-EEEECTTSSEEEEEETTEEEEEETTTTEEEECC
T ss_pred             cceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccc-cccCCCCCCEEEEEeCCcEEEEecCCCCEEEec
Confidence            468899976676777665 88999999877   6655544445567 889999998444433457888884 56 54443


Q ss_pred             CCcC-----------------CcccEEEccCCc-EEEEeCCC-CCCC-------------ccccccccccC--CCCeEEE
Q 018474          129 PDAS-----------------FTNDVIAASDGT-LYFTVAST-KYTP-------------TDFYKDMAEGK--PYGQLRK  174 (355)
Q Consensus       129 ~~~~-----------------~~~~l~~d~dG~-ly~~d~~~-~~~~-------------~~~~~~~~~~~--~~g~l~~  174 (355)
                      ....                 .+.+++++|||+ |+++.... ....             ....+. ..+.  ....++.
T Consensus       189 ~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~-~~g~~~~~~~l~~  267 (741)
T 2ecf_A          189 ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYP-AAGDANVQVKLGV  267 (741)
T ss_dssp             CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECC-BTTSCCCEEEEEE
T ss_pred             cCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecC-CCCCCCCeeEEEE
Confidence            2211                 157899999994 66653210 0000             000000 0011  1226888


Q ss_pred             EeCCC-CeEEEeec---cccccccEEEeCCCCEEEEEeC----CCCeEEEEEeCCCCCcceeEecccCCC---CcCceEE
Q 018474          175 YDPKL-KETTVLHE---GFYFANGIALSKNEDFVVVCES----WKFRCRRYWLKGDRAGILDAFIENLPG---GPDNINL  243 (355)
Q Consensus       175 ~dp~~-~~~~~~~~---~~~~pngi~~~~dg~~l~v~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~g---~p~~i~~  243 (355)
                      +|.++ ++...+..   .......+++ |||+.++++..    ....|+.+++++...  ...+.....+   ....+.+
T Consensus       268 ~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~--~~~~~~~~~~~~~~~~~~~~  344 (741)
T 2ecf_A          268 ISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQ--RVLAHETSPTWVPLHNSLRF  344 (741)
T ss_dssp             ECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCE--EEEEEEECSSCCCCCSCCEE
T ss_pred             EECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCce--EEEEEcCCCCcCCcCCceEE
Confidence            99888 76654432   1234567899 99998887653    234688888754322  1112111111   1246788


Q ss_pred             CCCCCEEEEee
Q 018474          244 APDGSFWIGLI  254 (355)
Q Consensus       244 d~~G~lwv~~~  254 (355)
                      ++||++++...
T Consensus       345 spdg~~~~~~~  355 (741)
T 2ecf_A          345 LDDGSILWSSE  355 (741)
T ss_dssp             CTTSCEEEEEC
T ss_pred             CCCCeEEEEec
Confidence            99998655543

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=98.77  E-value=6.9e-06  Score=76.76  Aligned_cols=232  Identities=14%  Similarity=0.133  Sum_probs=144.0

Q ss_pred             CCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeec-cCCCcccCeEECCCCCEEEEeCCCc-EEEEc-CCC--eEE
Q 018474           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH-IDSQSLLGLTTTKDGGVILCDNEKG-LLKVT-EEG--VEA  126 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~-~~~~p~~gl~~d~~g~L~v~~~~~g-l~~~~-~~g--~~~  126 (355)
                      ..-.++++.+++..|.+++.++.|..+|..+++...... ....+. ++++.++|+.+++...++ +..++ .++  ++.
T Consensus       151 ~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~-~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~  229 (410)
T 1vyh_C          151 DSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVS-SVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKT  229 (410)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEE-EEEECSSSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEE-EEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence            445678888667778888899999999987765443222 223466 889999988666554555 44555 456  555


Q ss_pred             EcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee-ccccccccEEEeCC-----
Q 018474          127 IVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFYFANGIALSKN-----  200 (355)
Q Consensus       127 ~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~-~~~~~pngi~~~~d-----  200 (355)
                      +......++.+.++++|.+.++.+.                 .+.+..||..+++..... ......+.++++|+     
T Consensus       230 ~~~h~~~v~~~~~~~~g~~l~s~s~-----------------D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  292 (410)
T 1vyh_C          230 FTGHREWVRMVRPNQDGTLIASCSN-----------------DQTVRVWVVATKECKAELREHRHVVECISWAPESSYSS  292 (410)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEET-----------------TSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGG
T ss_pred             EeCCCccEEEEEECCCCCEEEEEcC-----------------CCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccc
Confidence            5554467888999999987776443                 456777887766543322 22233456777775     


Q ss_pred             ---------------CCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeecCCchhhHhhh
Q 018474          201 ---------------EDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQ  265 (355)
Q Consensus       201 ---------------g~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~  265 (355)
                                     +. ++++....+.|..|++....  ....+. ........+.++++|++.++....         
T Consensus       293 ~~~~~~~~~~~~~~~g~-~l~sgs~D~~i~iwd~~~~~--~~~~~~-~h~~~v~~v~~~~~g~~l~s~s~D---------  359 (410)
T 1vyh_C          293 ISEATGSETKKSGKPGP-FLLSGSRDKTIKMWDVSTGM--CLMTLV-GHDNWVRGVLFHSGGKFILSCADD---------  359 (410)
T ss_dssp             GGGCCSCC-------CC-EEEEEETTSEEEEEETTTTE--EEEEEE-CCSSCEEEEEECSSSSCEEEEETT---------
T ss_pred             hhhhccccccccCCCCC-EEEEEeCCCeEEEEECCCCc--eEEEEE-CCCCcEEEEEEcCCCCEEEEEeCC---------
Confidence                           44 45555667889999975321  122222 233334567889999876665432         


Q ss_pred             cchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeC-CEEEEeecCCCeEEEee
Q 018474          266 KCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFD-GNLYLASLQSNFIGILP  344 (355)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~-g~L~v~~~~~~~i~~~~  344 (355)
                                                 +.|..+|.++++....+..+.+    .++.+.... +.+.++......|...+
T Consensus       360 ---------------------------~~i~vwd~~~~~~~~~~~~h~~----~v~~l~~~~~~~~l~sgs~D~~i~vW~  408 (410)
T 1vyh_C          360 ---------------------------KTLRVWDYKNKRCMKTLNAHEH----FVTSLDFHKTAPYVVTGSVDQTVKVWE  408 (410)
T ss_dssp             ---------------------------TEEEEECCTTSCCCEEEECCSS----CEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             ---------------------------CeEEEEECCCCceEEEEcCCCC----cEEEEEEcCCCCEEEEEeCCCcEEEEe
Confidence                                       3566777656666667765443    466666654 44444444456666654


Q ss_pred             C
Q 018474          345 L  345 (355)
Q Consensus       345 ~  345 (355)
                      +
T Consensus       409 ~  409 (410)
T 1vyh_C          409 C  409 (410)
T ss_dssp             -
T ss_pred             C
Confidence            3

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=98.75  E-value=1.9e-05  Score=76.97  Aligned_cols=235  Identities=12%  Similarity=0.109  Sum_probs=147.0

Q ss_pred             CceEEEee--CCCeEEEEecCCEEEEEEcCCC--------eeE-EeeccCCCcccCeEECCCCCEEEEeCCC----cEEE
Q 018474           54 PEDVSVVV--SKGALYTATRDGWVKYFILHNE--------TLV-NWKHIDSQSLLGLTTTKDGGVILCDNEK----GLLK  118 (355)
Q Consensus        54 p~~i~~d~--~~g~l~~~~~~g~i~~~~~~~g--------~~~-~~~~~~~~p~~gl~~d~~g~L~v~~~~~----gl~~  118 (355)
                      ..++++.+  ++..|+++..+|.|..++..++        +.. .+......+. .+++.++|+.+++....    +.+.
T Consensus        67 v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~~~~~~~~v~  145 (615)
T 1pgu_A           67 VTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPIS-DISWDFEGRRLCVVGEGRDNFGVFI  145 (615)
T ss_dssp             EEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEE-EEEECTTSSEEEEEECCSSCSEEEE
T ss_pred             EEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEE-EEEEeCCCCEEEEeccCCCCccEEE
Confidence            67899997  7777888889999999988544        222 2222234566 89999999865544332    3333


Q ss_pred             EcCCC--eEEEcCCcCCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccc-c---c
Q 018474          119 VTEEG--VEAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGF-Y---F  191 (355)
Q Consensus       119 ~~~~g--~~~~~~~~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~-~---~  191 (355)
                      +-..+  ...+......+..++++++|. +.++.+.                 .+.+..||..+++........ .   .
T Consensus       146 ~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----------------d~~v~vwd~~~~~~~~~~~~~~~~~~~  208 (615)
T 1pgu_A          146 SWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGD-----------------DGSVVFYQGPPFKFSASDRTHHKQGSF  208 (615)
T ss_dssp             ETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEET-----------------TTEEEEEETTTBEEEEEECSSSCTTCC
T ss_pred             EEECCCcceeeecCCccEEEEEECCCCCcEEEEEeC-----------------CCcEEEEeCCCcceeeeecccCCCCce
Confidence            33333  555544446788999999986 5555332                 567888998777654433322 2   3


Q ss_pred             cccEEEeCC-CCEEEEEeCCCCeEEEEEeCCCCCcceeEecc---cCCCCcCceEECCCCCEEEEeecCCchhhHhhhcc
Q 018474          192 ANGIALSKN-EDFVVVCESWKFRCRRYWLKGDRAGILDAFIE---NLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKC  267 (355)
Q Consensus       192 pngi~~~~d-g~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~  267 (355)
                      ...++++|+ ++.++.+. ..+.|..|++...+  ....+..   ...+....+.+. +|++.++....           
T Consensus       209 v~~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d-----------  273 (615)
T 1pgu_A          209 VRDVEFSPDSGEFVITVG-SDRKISCFDGKSGE--FLKYIEDDQEPVQGGIFALSWL-DSQKFATVGAD-----------  273 (615)
T ss_dssp             EEEEEECSTTCCEEEEEE-TTCCEEEEETTTCC--EEEECCBTTBCCCSCEEEEEES-SSSEEEEEETT-----------
T ss_pred             EEEEEECCCCCCEEEEEe-CCCeEEEEECCCCC--EeEEecccccccCCceEEEEEc-CCCEEEEEcCC-----------
Confidence            567899999 88665554 56789999975432  1222211   222334557787 88776666441           


Q ss_pred             hhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEE-eCCEEEEeecCCCeEEEeeCC
Q 018474          268 REKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAE-FDGNLYLASLQSNFIGILPLD  346 (355)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~  346 (355)
                                               +.|..+|..+++....+..+.......+..+.. .++.+..++. .+.|..+++.
T Consensus       274 -------------------------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~i~~~d~~  327 (615)
T 1pgu_A          274 -------------------------ATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSL-DGTLNFYELG  327 (615)
T ss_dssp             -------------------------SEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEET-TSCEEEEETT
T ss_pred             -------------------------CcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEEC-CCCEEEEECC
Confidence                                     457788875688888887653332334444443 4566666665 6777777765


Q ss_pred             C
Q 018474          347 G  347 (355)
Q Consensus       347 ~  347 (355)
                      .
T Consensus       328 ~  328 (615)
T 1pgu_A          328 H  328 (615)
T ss_dssp             E
T ss_pred             C
Confidence            4

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=98.75  E-value=9.8e-06  Score=82.08  Aligned_cols=238  Identities=8%  Similarity=0.035  Sum_probs=146.2

Q ss_pred             CCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEE-eeccCCCcccCeEECCCCCEEEEeCCCc-EEEEc-CCC--
Q 018474           49 GCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVN-WKHIDSQSLLGLTTTKDGGVILCDNEKG-LLKVT-EEG--  123 (355)
Q Consensus        49 ~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~-~~~~~~~p~~gl~~d~~g~L~v~~~~~g-l~~~~-~~g--  123 (355)
                      +.-....++++.|++..+.++..+|.|..++..+++... +......+. ++++.++|+.+++....| +..++ .++  
T Consensus        11 ~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~   89 (814)
T 3mkq_A           11 NRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVR-AGKFIARKNWIIVGSDDFRIRVFNYNTGEK   89 (814)
T ss_dssp             EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE-EEEEEGGGTEEEEEETTSEEEEEETTTCCE
T ss_pred             cCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEE-EEEEeCCCCEEEEEeCCCeEEEEECCCCcE
Confidence            334567899999877888888899999999987876543 332344566 899999988555443444 55556 455  


Q ss_pred             eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCC-eEEEe-eccccccccEEEeC-C
Q 018474          124 VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLK-ETTVL-HEGFYFANGIALSK-N  200 (355)
Q Consensus       124 ~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~-~~~~~-~~~~~~pngi~~~~-d  200 (355)
                      +..+......+.+++++++|...++.+.                 .+.+..||..++ ..... .........++++| +
T Consensus        90 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----------------dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~  152 (814)
T 3mkq_A           90 VVDFEAHPDYIRSIAVHPTKPYVLSGSD-----------------DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD  152 (814)
T ss_dssp             EEEEECCSSCEEEEEECSSSSEEEEEET-----------------TSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTE
T ss_pred             EEEEecCCCCEEEEEEeCCCCEEEEEcC-----------------CCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCC
Confidence            5555444467889999999975554322                 457788887655 33222 22233456789999 6


Q ss_pred             CCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECC--CCCEEEEeecCCchhhHhhhcchhHHHHHHhcc
Q 018474          201 EDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAP--DGSFWIGLIKMNQTGVRAIQKCREKWELLDAYP  278 (355)
Q Consensus       201 g~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~--~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (355)
                      ++. +++....+.|..|++.....  ...+..........+.+.+  +|++.++....                      
T Consensus       153 ~~~-l~~~~~dg~v~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d----------------------  207 (814)
T 3mkq_A          153 PST-FASGCLDRTVKVWSLGQSTP--NFTLTTGQERGVNYVDYYPLPDKPYMITASDD----------------------  207 (814)
T ss_dssp             EEE-EEEEETTSEEEEEETTCSSC--SEEEECCCTTCCCEEEECCSTTCCEEEEECTT----------------------
T ss_pred             CCE-EEEEeCCCeEEEEECCCCcc--eeEEecCCCCCEEEEEEEECCCCCEEEEEeCC----------------------
Confidence            664 44445668899999854322  1112212212245566666  77766655431                      


Q ss_pred             chhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeC-CEEEEeecCCCeEEEeeCCC
Q 018474          279 GLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFD-GNLYLASLQSNFIGILPLDG  347 (355)
Q Consensus       279 ~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~-g~L~v~~~~~~~i~~~~~~~  347 (355)
                                    +.|..+|..+++....+..+.+    .++.+.... +.+.+.....+.|..+++.+
T Consensus       208 --------------g~i~~~d~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~  259 (814)
T 3mkq_A          208 --------------LTIKIWDYQTKSCVATLEGHMS----NVSFAVFHPTLPIIISGSEDGTLKIWNSST  259 (814)
T ss_dssp             --------------SEEEEEETTTTEEEEEEECCSS----CEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred             --------------CEEEEEECCCCcEEEEEcCCCC----CEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence                          4577778657777777765443    344455432 33333333356677776654

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=98.75  E-value=1.9e-06  Score=79.39  Aligned_cols=186  Identities=13%  Similarity=0.058  Sum_probs=118.2

Q ss_pred             CceEEEeeCCCeEEEEe--cCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEc-CCC--eEEEc
Q 018474           54 PEDVSVVVSKGALYTAT--RDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT-EEG--VEAIV  128 (355)
Q Consensus        54 p~~i~~d~~~g~l~~~~--~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~-~~g--~~~~~  128 (355)
                      ..++++.|++..+.+++  .++.|..+|.++++..........+. ++++.++|+++++...+++.+++ .++  .....
T Consensus       136 ~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~-~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~  214 (365)
T 4h5i_A          136 TKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVK-DLHFSTDGKVVAYITGSSLEVISTVTGSCIARKT  214 (365)
T ss_dssp             EEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCC-EEEECTTSSEEEEECSSCEEEEETTTCCEEEEEC
T ss_pred             EEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceE-EEEEccCCceEEeccceeEEEEEeccCcceeeee
Confidence            44688997677777765  47889999998887654444445678 99999999988877677788887 455  32222


Q ss_pred             C--CcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEe-----eccccccccEEEeCCC
Q 018474          129 P--DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL-----HEGFYFANGIALSKNE  201 (355)
Q Consensus       129 ~--~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~-----~~~~~~pngi~~~~dg  201 (355)
                      .  ....++.+++.++|+..++.+..             +.....+..++.........     .......+.++++|||
T Consensus       215 ~~~~~~~v~~v~fspdg~~l~~~s~d-------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg  281 (365)
T 4h5i_A          215 DFDKNWSLSKINFIADDTVLIAASLK-------------KGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKG  281 (365)
T ss_dssp             CCCTTEEEEEEEEEETTEEEEEEEES-------------SSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTS
T ss_pred             cCCCCCCEEEEEEcCCCCEEEEEecC-------------CcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCC
Confidence            2  22567889999999766653320             01112355566544433221     1222334678999999


Q ss_pred             CEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeecC
Q 018474          202 DFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKM  256 (355)
Q Consensus       202 ~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~  256 (355)
                      +.|.. ....+.|..|+++..+  ....+.....+....+++++||++.++....
T Consensus       282 ~~las-gs~D~~V~iwd~~~~~--~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D  333 (365)
T 4h5i_A          282 ELAVL-ASNDNSIALVKLKDLS--MSKIFKQAHSFAITEVTISPDSTYVASVSAA  333 (365)
T ss_dssp             CEEEE-EETTSCEEEEETTTTE--EEEEETTSSSSCEEEEEECTTSCEEEEEETT
T ss_pred             CceEE-EcCCCEEEEEECCCCc--EEEEecCcccCCEEEEEECCCCCEEEEEeCC
Confidence            95544 4556789899875321  2222333333445678899999988877653

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=98.73  E-value=3e-06  Score=77.99  Aligned_cols=188  Identities=8%  Similarity=0.004  Sum_probs=121.2

Q ss_pred             CCCCCCceEEEeeCC-CeEEEEecCCEEEEEEcCCCeeEEeec---cCCCcccCeEECC-CCCEEEEeCCCc-EEEEcC-
Q 018474           49 GCVNHPEDVSVVVSK-GALYTATRDGWVKYFILHNETLVNWKH---IDSQSLLGLTTTK-DGGVILCDNEKG-LLKVTE-  121 (355)
Q Consensus        49 ~~~~~p~~i~~d~~~-g~l~~~~~~g~i~~~~~~~g~~~~~~~---~~~~p~~gl~~d~-~g~L~v~~~~~g-l~~~~~-  121 (355)
                      +.-..-.++++.+++ ..+++++.+|.|..++..+++......   ....+. ++++.+ +++++++...++ +..++. 
T Consensus        71 ~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~l~s~~~d~~i~iwd~~  149 (383)
T 3ei3_B           71 PFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAIT-GMKFNQFNTNQLFVSSIRGATTLRDFS  149 (383)
T ss_dssp             CCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEE-EEEEETTEEEEEEEEETTTEEEEEETT
T ss_pred             CCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCcee-EEEeCCCCCCEEEEEeCCCEEEEEECC
Confidence            434567789999665 678888999999999997776554432   234566 888987 555554443444 555553 


Q ss_pred             CC-eEEEcCCc---CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEE
Q 018474          122 EG-VEAIVPDA---SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIAL  197 (355)
Q Consensus       122 ~g-~~~~~~~~---~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~  197 (355)
                      ++ ...+....   ..+.+++++++|++.++...                 .+.+..||.+......+.........+++
T Consensus       150 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------------d~~i~i~d~~~~~~~~~~~h~~~v~~~~~  212 (383)
T 3ei3_B          150 GSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDS-----------------TGRLLLLGLDGHEIFKEKLHKAKVTHAEF  212 (383)
T ss_dssp             SCEEEEEECCCCSSCCEEEEEEETTTTEEEEEET-----------------TSEEEEEETTSCEEEEEECSSSCEEEEEE
T ss_pred             CCceEEEeccCCCCCCeEEEEECCCCCEEEEECC-----------------CCCEEEEECCCCEEEEeccCCCcEEEEEE
Confidence            34 55443322   56888999999976665433                 56788899865555555444455678999


Q ss_pred             eCCCCEEEEEeCCCCeEEEEEeCCCCC-cceeEecccCCCCcCceEECC-CCCEEEEeec
Q 018474          198 SKNEDFVVVCESWKFRCRRYWLKGDRA-GILDAFIENLPGGPDNINLAP-DGSFWIGLIK  255 (355)
Q Consensus       198 ~~dg~~l~v~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~g~p~~i~~d~-~G~lwv~~~~  255 (355)
                      +|+++.++++....+.|..|++..... ....... ...+....+.+++ +|++.++...
T Consensus       213 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~  271 (383)
T 3ei3_B          213 NPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQ  271 (383)
T ss_dssp             CSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEES
T ss_pred             CCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcC
Confidence            999984455555678899999864221 2221111 2333456678888 8987666544

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=98.72  E-value=1.4e-06  Score=79.95  Aligned_cols=236  Identities=14%  Similarity=0.116  Sum_probs=136.9

Q ss_pred             CceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEe---ec--cCCCcccCeEECCCCCEEEEeCCCc-EEEEc-CCC--e
Q 018474           54 PEDVSVVVSKGALYTATRDGWVKYFILHNETLVNW---KH--IDSQSLLGLTTTKDGGVILCDNEKG-LLKVT-EEG--V  124 (355)
Q Consensus        54 p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~---~~--~~~~p~~gl~~d~~g~L~v~~~~~g-l~~~~-~~g--~  124 (355)
                      -.++++. +++.++++..+|.|..+|..+++....   ..  ....+. ++++.++|+.+++....+ +..++ .++  +
T Consensus        97 V~~~~~s-~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~-~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~  174 (357)
T 4g56_B           97 VTDVAWV-SEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVK-TLSVFSDGTQAVSGGKDFSVKVWDLSQKAVL  174 (357)
T ss_dssp             EEEEEEE-TTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEE-EEEECSSSSEEEEEETTSCEEEEETTTTEEE
T ss_pred             EEEEEEc-CCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEE-EEEECCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence            4678888 567888888899999988876653221   11  123466 899999998766544445 55556 455  4


Q ss_pred             EEEcCCcCCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeec---cccccccEEEeCC
Q 018474          125 EAIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE---GFYFANGIALSKN  200 (355)
Q Consensus       125 ~~~~~~~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~---~~~~pngi~~~~d  200 (355)
                      ..+......++++++.+++ .++++...                 .+.+..||..+++......   ....+..++++|+
T Consensus       175 ~~~~~h~~~v~~v~~s~~~~~~~~s~~~-----------------dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~  237 (357)
T 4g56_B          175 KSYNAHSSEVNCVAACPGKDTIFLSCGE-----------------DGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPE  237 (357)
T ss_dssp             EEECCCSSCEEEEEECTTCSSCEEEEET-----------------TSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTT
T ss_pred             EEEcCCCCCEEEEEEccCCCceeeeecc-----------------CCceEEEECCCCceeeeeeeccccccccchhhhhc
Confidence            5554444678889998877 45555332                 4567788876665322211   1233567899998


Q ss_pred             CCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCC-EEEEeecCCchhhHhhhcchhHHHHHHhccc
Q 018474          201 EDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGS-FWIGLIKMNQTGVRAIQKCREKWELLDAYPG  279 (355)
Q Consensus       201 g~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (355)
                      +..++++....+.|..|++...+  ....+. ........+++.++|. +.++....                       
T Consensus       238 ~~~~la~g~~d~~i~~wd~~~~~--~~~~~~-~~~~~v~~l~~sp~~~~~lasgs~D-----------------------  291 (357)
T 4g56_B          238 KDDTFACGDETGNVSLVNIKNPD--SAQTSA-VHSQNITGLAYSYHSSPFLASISED-----------------------  291 (357)
T ss_dssp             STTEEEEEESSSCEEEEESSCGG--GCEEEC-CCSSCEEEEEECSSSSCCEEEEETT-----------------------
T ss_pred             ccceEEEeecccceeEEECCCCc--EeEEEe-ccceeEEEEEEcCCCCCEEEEEeCC-----------------------
Confidence            76566666667889999985432  122222 2222234577888774 44433321                       


Q ss_pred             hhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEe--CCEEEEeecCCCeEEEeeCCCCCCCc
Q 018474          280 LISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF--DGNLYLASLQSNFIGILPLDGPEPQL  352 (355)
Q Consensus       280 ~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~--~g~L~v~~~~~~~i~~~~~~~~~~~~  352 (355)
                                   +.|..+|.+.++.+..+ .+.    ..++.+...  +++++++.-....|...++++...+.
T Consensus       292 -------------~~i~iwd~~~~~~~~~~-~H~----~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~~  348 (357)
T 4g56_B          292 -------------CTVAVLDADFSEVFRDL-SHR----DFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRTE  348 (357)
T ss_dssp             -------------SCEEEECTTSCEEEEEC-CCS----SCEEEEEECSSSTTEEEEEETTSCEEEEECC------
T ss_pred             -------------CEEEEEECCCCcEeEEC-CCC----CCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCccc
Confidence                         34777787567665544 323    356777764  45555555557889999987765544

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=98.71  E-value=5.7e-06  Score=76.04  Aligned_cols=248  Identities=10%  Similarity=0.028  Sum_probs=143.8

Q ss_pred             CCCCceEEEee-CCCeEEEEecCCEEEEEEcCCCeeEEeeccC---CCcccCeEECCCCCEEEEeCCCc-EEEEcCCC--
Q 018474           51 VNHPEDVSVVV-SKGALYTATRDGWVKYFILHNETLVNWKHID---SQSLLGLTTTKDGGVILCDNEKG-LLKVTEEG--  123 (355)
Q Consensus        51 ~~~p~~i~~d~-~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~---~~p~~gl~~d~~g~L~v~~~~~g-l~~~~~~g--  123 (355)
                      -....++++.+ ++..+++++.++.|..+|..++....+....   ..+. ++++.++++++++...++ +..++.++  
T Consensus       118 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  196 (383)
T 3ei3_B          118 GDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYC-CVDVSVSRQMLATGDSTGRLLLLGLDGHE  196 (383)
T ss_dssp             TCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEE-EEEEETTTTEEEEEETTSEEEEEETTSCE
T ss_pred             CCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeE-EEEECCCCCEEEEECCCCCEEEEECCCCE
Confidence            34556888885 3466777888999999999766555544322   3466 888988888655544444 55555444  


Q ss_pred             eEEEcCCcCCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCC----CeEEEeeccccccccEEEe
Q 018474          124 VEAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKL----KETTVLHEGFYFANGIALS  198 (355)
Q Consensus       124 ~~~~~~~~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~----~~~~~~~~~~~~pngi~~~  198 (355)
                      +..+......+.++++++++. ++++.+.                 .+.+..||..+    ++.............++++
T Consensus       197 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-----------------d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s  259 (383)
T 3ei3_B          197 IFKEKLHKAKVTHAEFNPRCDWLMATSSV-----------------DATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFN  259 (383)
T ss_dssp             EEEEECSSSCEEEEEECSSCTTEEEEEET-----------------TSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEEC
T ss_pred             EEEeccCCCcEEEEEECCCCCCEEEEEeC-----------------CCEEEEEeCCCCCcccceEEEecCCCceEEEEEc
Confidence            555554446789999999997 6666433                 45677887765    3333222333446789999


Q ss_pred             C-CCCEEEEEeCCCCeEEEEEeCCCCC-cceeEecccCC--CCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHH
Q 018474          199 K-NEDFVVVCESWKFRCRRYWLKGDRA-GILDAFIENLP--GGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELL  274 (355)
Q Consensus       199 ~-dg~~l~v~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~--g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~  274 (355)
                      | +++.++.+. ..+.|..|+++.... ...........  ..+-.....+++.+...........              
T Consensus       260 ~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--------------  324 (383)
T 3ei3_B          260 PTDSTKLLTTD-QRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--------------  324 (383)
T ss_dssp             TTTSCEEEEEE-SSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--------------
T ss_pred             CCCCCEEEEEc-CCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--------------
Confidence            9 998666554 568999999864322 11111000000  0111234455555444333211100              


Q ss_pred             HhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEe-CCEEEEeecCCCeEEEeeCCC
Q 018474          275 DAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-DGNLYLASLQSNFIGILPLDG  347 (355)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~~~~  347 (355)
                                   .++..+.|..+|.++++.+..+..+..  ...+..+... ++++.++.. .+.|..+++++
T Consensus       325 -------------s~s~d~~i~iwd~~~~~~~~~l~~~~~--~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          325 -------------LLNDKRTIDIYDANSGGLVHQLRDPNA--AGIISLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             -------------CTTCCCCEEEEETTTCCEEEEECBTTB--CSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             -------------ccCCCCeEEEEecCCCceeeeecCCCC--CceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence                         012335688888767888888865321  1234443443 344444443 67888888764

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=98.70  E-value=3.3e-06  Score=76.03  Aligned_cols=182  Identities=11%  Similarity=0.052  Sum_probs=111.4

Q ss_pred             CCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCe----eEEeeccCCCcccCeEECCCCC--EEEEeCCCcEEEEcC-CC
Q 018474           51 VNHPEDVSVVVSKGALYTATRDGWVKYFILHNET----LVNWKHIDSQSLLGLTTTKDGG--VILCDNEKGLLKVTE-EG  123 (355)
Q Consensus        51 ~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~----~~~~~~~~~~p~~gl~~d~~g~--L~v~~~~~gl~~~~~-~g  123 (355)
                      -....++++.+++..|++++.+|.|..++..+++    ..........+. .+++.++++  |+.+...+.+..++. ..
T Consensus        11 ~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~dg~i~~wd~~~~   89 (342)
T 1yfq_A           11 KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLL-CCNFIDNTDLQIYVGTVQGEILKVDLIGS   89 (342)
T ss_dssp             SSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEE-EEEEEESSSEEEEEEETTSCEEEECSSSS
T ss_pred             CCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceE-EEEECCCCCcEEEEEcCCCeEEEEEeccC
Confidence            3456788899777788889999999999886665    333333344567 889988888  455554445666664 43


Q ss_pred             --eEEEcC--CcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCC---------CeEEEeecccc
Q 018474          124 --VEAIVP--DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKL---------KETTVLHEGFY  190 (355)
Q Consensus       124 --~~~~~~--~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~---------~~~~~~~~~~~  190 (355)
                        ...+..  ....+.++++++ +.+.++.+.                 .+.+..||..+         ++.........
T Consensus        90 ~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~-----------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  151 (342)
T 1yfq_A           90 PSFQALTNNEANLGICRICKYG-DDKLIAASW-----------------DGLIEVIDPRNYGDGVIAVKNLNSNNTKVKN  151 (342)
T ss_dssp             SSEEECBSCCCCSCEEEEEEET-TTEEEEEET-----------------TSEEEEECHHHHTTBCEEEEESCSSSSSSCC
T ss_pred             CceEeccccCCCCceEEEEeCC-CCEEEEEcC-----------------CCeEEEEcccccccccccccCCeeeEEeeCC
Confidence              555544  446788899988 766655332                 45677777543         22111111223


Q ss_pred             ccccEEEeCCCCEEEEEeCCCCeEEEEEeCC-CCCcceeEecccCCCCcCceEECC-CCCEEEEeec
Q 018474          191 FANGIALSKNEDFVVVCESWKFRCRRYWLKG-DRAGILDAFIENLPGGPDNINLAP-DGSFWIGLIK  255 (355)
Q Consensus       191 ~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~g~p~~i~~d~-~G~lwv~~~~  255 (355)
                      ....+++++++  ++++ ...+.|..|+++. ..... .............+.+.+ +|+++++...
T Consensus       152 ~v~~~~~~~~~--l~~~-~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~i~~i~~~~~~~~~l~~~~~  214 (342)
T 1yfq_A          152 KIFTMDTNSSR--LIVG-MNNSQVQWFRLPLCEDDNG-TIEESGLKYQIRDVALLPKEQEGYACSSI  214 (342)
T ss_dssp             CEEEEEECSSE--EEEE-ESTTEEEEEESSCCTTCCC-EEEECSCSSCEEEEEECSGGGCEEEEEET
T ss_pred             ceEEEEecCCc--EEEE-eCCCeEEEEECCccccccc-eeeecCCCCceeEEEECCCCCCEEEEEec
Confidence            35678888876  4444 4567899999865 32211 111112233356677888 8876665544

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=98.70  E-value=3.5e-05  Score=69.19  Aligned_cols=187  Identities=16%  Similarity=0.163  Sum_probs=112.8

Q ss_pred             CCCCCCCceEEEeeCC-CeEEEEecCCEEEEEEcCCC--e----eEEeeccCCCcccCeEECCCCCEEEEeCCCcEEE-E
Q 018474           48 EGCVNHPEDVSVVVSK-GALYTATRDGWVKYFILHNE--T----LVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLK-V  119 (355)
Q Consensus        48 ~~~~~~p~~i~~d~~~-g~l~~~~~~g~i~~~~~~~g--~----~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~-~  119 (355)
                      .|.-..-.++++.+.+ ..|..++.|+.|..++..+.  +    ...+........ .+++.++|++.++...++.++ +
T Consensus        14 ~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~-~~~~s~dg~~l~s~s~D~~v~~w   92 (319)
T 3frx_A           14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQ-DCTLTADGAYALSASWDKTLRLW   92 (319)
T ss_dssp             CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEE-EEEECTTSSEEEEEETTSEEEEE
T ss_pred             ccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEE-EEEECCCCCEEEEEeCCCEEEEE
Confidence            3544556778887544 56778889999988876322  1    112222223456 788999998776655556454 4


Q ss_pred             c-CCC--eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEE
Q 018474          120 T-EEG--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIA  196 (355)
Q Consensus       120 ~-~~g--~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~  196 (355)
                      + .++  ++.+......+.++++++++.+.++.+.                 .+.+..||.++.....+.........++
T Consensus        93 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-----------------D~~i~vwd~~~~~~~~~~~h~~~v~~~~  155 (319)
T 3frx_A           93 DVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR-----------------DKTIKVWTIKGQCLATLLGHNDWVSQVR  155 (319)
T ss_dssp             ETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEET-----------------TSCEEEEETTSCEEEEECCCSSCEEEEE
T ss_pred             ECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeC-----------------CCeEEEEECCCCeEEEEeccCCcEEEEE
Confidence            5 466  5555544467889999999987776443                 4567778876655544433323344566


Q ss_pred             EeCCCC-----EEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474          197 LSKNED-----FVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       197 ~~~dg~-----~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      +.|.++     ..+++....+.|..++++...  ....+. ........+.++++|++.++...
T Consensus       156 ~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~-~h~~~v~~~~~sp~g~~l~s~~~  216 (319)
T 3frx_A          156 VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ--IEADFI-GHNSNINTLTASPDGTLIASAGK  216 (319)
T ss_dssp             ECCC------CCEEEEEETTSCEEEEETTTTE--EEEEEC-CCCSCEEEEEECTTSSEEEEEET
T ss_pred             EccCCCCCCCccEEEEEeCCCEEEEEECCcch--hheeec-CCCCcEEEEEEcCCCCEEEEEeC
Confidence            766432     145555567788888875321  111222 22233455778999987776644

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=98.69  E-value=3.8e-06  Score=78.06  Aligned_cols=236  Identities=11%  Similarity=0.009  Sum_probs=139.4

Q ss_pred             CCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCCc-EEEEc-CCC-eEE-Ec
Q 018474           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKG-LLKVT-EEG-VEA-IV  128 (355)
Q Consensus        53 ~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~g-l~~~~-~~g-~~~-~~  128 (355)
                      ...++++++++..++++..+|.|+.++..+++............ ...+.++|+++++....| +..++ .++ ... +.
T Consensus        58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  136 (420)
T 3vl1_A           58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTA-VDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQ  136 (420)
T ss_dssp             CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSCCEEE-EEEECSSSCEEEEEETTSCEEEECTTSCEEEEETT
T ss_pred             cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecCCceE-EEEEecCCCEEEEEECCCCEEEEeCCCcceeeecc
Confidence            35588999888889999999999999986655432222111122 335667887655444444 65666 355 333 33


Q ss_pred             CCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeE-EEeeccccccccEEEeCCCCEEEEE
Q 018474          129 PDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKET-TVLHEGFYFANGIALSKNEDFVVVC  207 (355)
Q Consensus       129 ~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~-~~~~~~~~~pngi~~~~dg~~l~v~  207 (355)
                      .....+.+++++++|++.++.+.                 .+.+..||..+++. ..+.........++++||++.++.+
T Consensus       137 ~h~~~v~~~~~~~~~~~l~s~s~-----------------d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~  199 (420)
T 3vl1_A          137 AHVSEITKLKFFPSGEALISSSQ-----------------DMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSA  199 (420)
T ss_dssp             SSSSCEEEEEECTTSSEEEEEET-----------------TSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEE
T ss_pred             cccCccEEEEECCCCCEEEEEeC-----------------CCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEE
Confidence            34477899999999976665433                 56788898876643 3333233445789999999966554


Q ss_pred             eCCCCeEEEEEeCCCCCcceeEeccc-----------------------CCCCcCceEECCCCCEEEEeecCCchhhHhh
Q 018474          208 ESWKFRCRRYWLKGDRAGILDAFIEN-----------------------LPGGPDNINLAPDGSFWIGLIKMNQTGVRAI  264 (355)
Q Consensus       208 ~~~~~~i~~~~~~~~~~~~~~~~~~~-----------------------~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~  264 (355)
                       ...+.|..|+++..+  ....+...                       .......+.++++|++.++....        
T Consensus       200 -~~d~~v~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------  268 (420)
T 3vl1_A          200 -SLDGTIRLWECGTGT--TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVS--------  268 (420)
T ss_dssp             -ETTSCEEEEETTTTE--EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETT--------
T ss_pred             -cCCCcEEEeECCCCc--eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCC--------
Confidence             456788889875421  11111100                       00112335567778655544331        


Q ss_pred             hcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeC-CE-EEEeecCCCeEEE
Q 018474          265 QKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFD-GN-LYLASLQSNFIGI  342 (355)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~-g~-L~v~~~~~~~i~~  342 (355)
                                                  +.|..+|..+++....+....   ...++.+.... +. +.+.......|..
T Consensus       269 ----------------------------g~i~i~d~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~~g~~dg~i~v  317 (420)
T 3vl1_A          269 ----------------------------GVITVHNVFSKEQTIQLPSKF---TCSCNSLTVDGNNANYIYAGYENGMLAQ  317 (420)
T ss_dssp             ----------------------------SCEEEEETTTCCEEEEECCTT---SSCEEEEEECSSCTTEEEEEETTSEEEE
T ss_pred             ----------------------------CeEEEEECCCCceeEEccccc---CCCceeEEEeCCCCCEEEEEeCCCeEEE
Confidence                                        347777765666555553321   22455566543 33 4444444778888


Q ss_pred             eeCCCC
Q 018474          343 LPLDGP  348 (355)
Q Consensus       343 ~~~~~~  348 (355)
                      ++++..
T Consensus       318 wd~~~~  323 (420)
T 3vl1_A          318 WDLRSP  323 (420)
T ss_dssp             EETTCT
T ss_pred             EEcCCC
Confidence            888764

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.68  E-value=2e-06  Score=79.41  Aligned_cols=244  Identities=8%  Similarity=-0.092  Sum_probs=139.8

Q ss_pred             CCeEEEEecC-C----EEEEEEcCCCeeEEeeccCCCcccCeEECCCC-CEEEEeC----------CCcEEEEcC-CC--
Q 018474           63 KGALYTATRD-G----WVKYFILHNETLVNWKHIDSQSLLGLTTTKDG-GVILCDN----------EKGLLKVTE-EG--  123 (355)
Q Consensus        63 ~g~l~~~~~~-g----~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g-~L~v~~~----------~~gl~~~~~-~g--  123 (355)
                      ...+|+.... +    .|..+|..+++...-...+..|  +++++++| .+||++.          .+-+..+|. ++  
T Consensus        31 ~~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v  108 (368)
T 1mda_H           31 SRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP  108 (368)
T ss_dssp             TTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE
T ss_pred             CCeEEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE
Confidence            3467777653 3    7889999998876555556666  79999988 5999973          123778884 55  


Q ss_pred             eEEEcCC-------cCCcccEEEccCC-cEEEEeCCC-C------CCCccccccc----------------cccCCCCeE
Q 018474          124 VEAIVPD-------ASFTNDVIAASDG-TLYFTVAST-K------YTPTDFYKDM----------------AEGKPYGQL  172 (355)
Q Consensus       124 ~~~~~~~-------~~~~~~l~~d~dG-~ly~~d~~~-~------~~~~~~~~~~----------------~~~~~~g~l  172 (355)
                      +..+...       ...|..+++++|| .+|+++... .      ..... ...+                ......+.+
T Consensus       109 v~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t-v~~i~v~~~~~~~p~g~~~~~~~~~dg~~  187 (368)
T 1mda_H          109 IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD-DQLTKSASCFHIHPGAAATHYLGSCPASL  187 (368)
T ss_dssp             EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE-EEEEECSSCCCCEEEETTEEECCCCTTSC
T ss_pred             EEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh-ceEEECCCceEEccCCCeEEEEEcCCCCE
Confidence            4544321       1479999999999 799987431 1      11111 0000                011123344


Q ss_pred             EEEeCCC-----CeEEE----eeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEe--cc----cCCCC
Q 018474          173 RKYDPKL-----KETTV----LHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAF--IE----NLPGG  237 (355)
Q Consensus       173 ~~~dp~~-----~~~~~----~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~--~~----~~~g~  237 (355)
                      ..+|.++     +++..    ...-...|.  + +++++.+|+...  +.++.++..+........+  ..    .....
T Consensus       188 ~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~--~-~~~~~~~~~vs~--~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~  262 (368)
T 1mda_H          188 AASDLAAAPAAAGIVGAQCTGAQNCSSQAA--Q-ANYPGMLVWAVA--SSILQGDIPAAGATMKAAIDGNESGRKADNFR  262 (368)
T ss_dssp             EEEECCSSCCCCEECCCCSCTTSCBCSCCE--E-ETTTTEEEECBS--SCCEEEECCSSCCEEECCCCSSCTHHHHTTEE
T ss_pred             EEEECccccccCCeEEEEeeeeeeCCCCcc--c-cccCCEEEEEcC--CEEEEEECCCCcceEEEEEEeccccccccccc
Confidence            4455443     22110    000112343  3 667776777665  7899999754221111111  00    00113


Q ss_pred             cCc---eEECCCC-CEEEEeecC-CchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECC
Q 018474          238 PDN---INLAPDG-SFWIGLIKM-NQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDP  312 (355)
Q Consensus       238 p~~---i~~d~~G-~lwv~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~  312 (355)
                      |.+   +.++++| ++||++... +..+                            .. ..++..+|.++++.+..+...
T Consensus       263 p~g~~~v~~s~dg~~lyV~~~~~~~~~~----------------------------~~-~~~~~ViD~~t~~vv~~i~vg  313 (368)
T 1mda_H          263 SAGFQMVAKLKNTDGIMILTVEHSRSCL----------------------------AA-AENTSSVTASVGQTSGPISNG  313 (368)
T ss_dssp             ECSSSCEEEETTTTEEEEEEEECSSCTT----------------------------SC-EEEEEEEESSSCCEEECCEEE
T ss_pred             cCcceeeEEcCCCCEEEEEeccccCccc----------------------------cc-CCCEEEEECCCCeEEEEEECC
Confidence            444   7788887 599987621 1000                            00 135668998778877776542


Q ss_pred             CCCcccceeEEEEe--CCEEEEeec-CCCeEEEeeCCCC
Q 018474          313 DATYISFVTSAAEF--DGNLYLASL-QSNFIGILPLDGP  348 (355)
Q Consensus       313 ~g~~~~~~~~~~~~--~g~L~v~~~-~~~~i~~~~~~~~  348 (355)
                      .     .+.++...  +.++|+++. .++.|.++++.+.
T Consensus       314 ~-----~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~  347 (368)
T 1mda_H          314 H-----DSDAIIAAQDGASDNYANSAGTEVLDIYDAASD  347 (368)
T ss_dssp             E-----EECEEEECCSSSCEEEEEETTTTEEEEEESSSC
T ss_pred             C-----CcceEEECCCCCEEEEEccCCCCeEEEEECCCC
Confidence            2     24445543  356999988 6999999998764

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=98.68  E-value=6.6e-06  Score=73.81  Aligned_cols=217  Identities=10%  Similarity=0.075  Sum_probs=135.2

Q ss_pred             CceEEEeeCCCeEEEEec--------------CCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEe---CC-Cc
Q 018474           54 PEDVSVVVSKGALYTATR--------------DGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCD---NE-KG  115 (355)
Q Consensus        54 p~~i~~d~~~g~l~~~~~--------------~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~---~~-~g  115 (355)
                      +..|..  .++.+|....              ...|++++...++.+.+....  .. .+..+ ++.||+++   .. ..
T Consensus        57 ~~~i~~--~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~~--~~-~~s~~-g~~Iy~~~~~~~~~~~  130 (302)
T 3s25_A           57 AMYINA--DKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPDP--CI-YASLI-GNYIYYLHYDTQTATS  130 (302)
T ss_dssp             EEEEEE--CSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECSC--EE-EEEEE-TTEEEEEEESSSSCEE
T ss_pred             eeeEEE--cCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecCC--cc-EEEEe-CCEEEEEeecCCCCce
Confidence            345544  4777776543              247899998665545443221  11 23332 45788887   22 35


Q ss_pred             EEEEcCCC--eEEEcCCcCCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecccccc
Q 018474          116 LLKVTEEG--VEAIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFA  192 (355)
Q Consensus       116 l~~~~~~g--~~~~~~~~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~p  192 (355)
                      |++++.+|  .+.+.....    ..++++| .||+++..                 ...|++.+.+++..+.+..+   +
T Consensus       131 Iy~~~~dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g-----------------~~~Iy~~~l~g~~~~~l~~~---~  186 (302)
T 3s25_A          131 LYRIRIDGEEKKKIKNHYL----FTCNTSDRYFYYNNPK-----------------NGQLYRYDTASQSEALFYDC---N  186 (302)
T ss_dssp             EEEEETTSCCCEEEESSCC----CCSEEETTEEEEECTT-----------------TCCEEEEETTTTEEEEEECS---C
T ss_pred             EEEEECCCCCeEEEeCCCc----eEeeEECCEEEEEeCC-----------------CceEEEEECCCCCEEEEeCC---C
Confidence            88888655  565555322    3346665 89998753                 34799999887776666543   2


Q ss_pred             ccEEEeCCCCEEEEEeCCC-CeEEEEEeCCCCCcceeEecccCCCCcCceEECCCC-CEEEEeecCCchhhHhhhcchhH
Q 018474          193 NGIALSKNEDFVVVCESWK-FRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDG-SFWIGLIKMNQTGVRAIQKCREK  270 (355)
Q Consensus       193 ngi~~~~dg~~l~v~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G-~lwv~~~~~~~~~~~~~~~~~~~  270 (355)
                      ...+++|+++.+||++... ..|.+.+++|..   .+.+.+.  ..|   .++.+| .||.+....              
T Consensus       187 ~~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~---~~~Lt~~--~~~---~~~~~g~~Iy~~~~~~--------------  244 (302)
T 3s25_A          187 CYKPVVLDDTNVYYMDVNRDNAIVHVNINNPN---PVVLTEA--NIE---HYNVYGSLIFYQRGGD--------------  244 (302)
T ss_dssp             EEEEEEEETTEEEEEEGGGTTEEEEECSSSCC---CEECSCS--CEE---EEEEETTEEEEEECSS--------------
T ss_pred             ccceeeecCCEEEEEEcCCCcEEEEEECCCCC---eEEEeCC--Ccc---eEEECCCEEEEEECCC--------------
Confidence            2345779999999998653 589999987743   2333321  112   244445 455543321              


Q ss_pred             HHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeCCEEEEeecCCCeEEEeeCCCCCC
Q 018474          271 WELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLDGPEP  350 (355)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~~~~~  350 (355)
                                           ...|.+++. +|...+.+....      ...+...+++||........|.+++++++..
T Consensus       245 ---------------------~~~i~~~~~-DG~~r~~l~~~~------~~~i~i~~d~Iy~td~~~~~i~~~~~dGs~~  296 (302)
T 3s25_A          245 ---------------------NPALCVVKN-DGTGFKELAKGE------FCNINVTSQYVYFTDFVSNKEYCTSTQNPDT  296 (302)
T ss_dssp             ---------------------SCEEEEEET-TSCCCEEEEESC------EEEEEECSSEEEEEETTTCCEEEEESSSCCS
T ss_pred             ---------------------CcEEEEEEC-CCCccEEeeCCc------cceEEEeCCEEEEEECCCCeEEEEECCCCCc
Confidence                                 146888998 886544443322      2356778999999999888999999887653

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=98.67  E-value=4.7e-05  Score=70.56  Aligned_cols=227  Identities=8%  Similarity=-0.024  Sum_probs=134.5

Q ss_pred             eEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeecc--CCCcccCeEECCCCCEEEE-eCCCcEEEEc-CCC--eEEEcC
Q 018474           56 DVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI--DSQSLLGLTTTKDGGVILC-DNEKGLLKVT-EEG--VEAIVP  129 (355)
Q Consensus        56 ~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~--~~~p~~gl~~d~~g~L~v~-~~~~gl~~~~-~~g--~~~~~~  129 (355)
                      ++.++  ++.++++..+|.|+.++..+++.......  ...+. ++++.++|+++++ ...+.+..++ .++  +..+..
T Consensus        98 ~~~~s--~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~-~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  174 (401)
T 4aez_A           98 LLDWS--NLNVVAVALERNVYVWNADSGSVSALAETDESTYVA-SVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAG  174 (401)
T ss_dssp             CEEEC--TTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEE-EEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred             EEeec--CCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEE-EEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecC
Confidence            45555  56688888899999999988876654433  34566 8999999875554 4344455666 345  555544


Q ss_pred             CcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCC-Ce-EEEeeccccccccEEEeCCCCEEEEE
Q 018474          130 DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKL-KE-TTVLHEGFYFANGIALSKNEDFVVVC  207 (355)
Q Consensus       130 ~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~-~~-~~~~~~~~~~pngi~~~~dg~~l~v~  207 (355)
                      ....+.++.++  +++.++.+.                 .+.+..||... +. ...+........+++++|+++.++.+
T Consensus       175 ~~~~v~~~~~~--~~~l~~~~~-----------------dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~  235 (401)
T 4aez_A          175 HQARVGCLSWN--RHVLSSGSR-----------------SGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASG  235 (401)
T ss_dssp             CSSCEEEEEEE--TTEEEEEET-----------------TSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             CCCceEEEEEC--CCEEEEEcC-----------------CCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEE
Confidence            44566777773  444444322                 56788888763 22 33333333456789999999966555


Q ss_pred             eCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCC-EEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccC
Q 018474          208 ESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGS-FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLP  286 (355)
Q Consensus       208 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (355)
                      . ..+.|..|++....  ....+. ........+.+.++|. ++++..+                               
T Consensus       236 ~-~d~~v~iwd~~~~~--~~~~~~-~~~~~v~~~~~~p~~~~ll~~~~g-------------------------------  280 (401)
T 4aez_A          236 G-NDNVVQIWDARSSI--PKFTKT-NHNAAVKAVAWCPWQSNLLATGGG-------------------------------  280 (401)
T ss_dssp             E-TTSCEEEEETTCSS--EEEEEC-CCSSCCCEEEECTTSTTEEEEECC-------------------------------
T ss_pred             e-CCCeEEEccCCCCC--ccEEec-CCcceEEEEEECCCCCCEEEEecC-------------------------------
Confidence            4 56789999985421  122222 2333456788888775 5544321                               


Q ss_pred             CCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEe-C-CEEEEe-ecCCCeEEEeeCCC
Q 018474          287 MGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-D-GNLYLA-SLQSNFIGILPLDG  347 (355)
Q Consensus       287 ~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~-g~L~v~-~~~~~~i~~~~~~~  347 (355)
                         ...+.|..+|..+++....+....     .++.+... + ..|+.+ +...+.|..++++.
T Consensus       281 ---s~d~~i~i~d~~~~~~~~~~~~~~-----~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~  336 (401)
T 4aez_A          281 ---TMDKQIHFWNAATGARVNTVDAGS-----QVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSS  336 (401)
T ss_dssp             ---TTTCEEEEEETTTCCEEEEEECSS-----CEEEEEECSSSSEEEEEECTTTCEEEEEEEET
T ss_pred             ---CCCCEEEEEECCCCCEEEEEeCCC-----cEEEEEECCCCCeEEEEeecCCCcEEEEecCC
Confidence               122467777865677766664322     34444443 2 334442 33466666666554

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=98.67  E-value=1.7e-05  Score=77.20  Aligned_cols=238  Identities=12%  Similarity=0.051  Sum_probs=142.0

Q ss_pred             CCCCceEEEeeCCCeEEEEecCCEEEEEEcCCC----ee-EEeeccCCC-cccCeEECC--CCCEEEEeCCCc-EEEEcC
Q 018474           51 VNHPEDVSVVVSKGALYTATRDGWVKYFILHNE----TL-VNWKHIDSQ-SLLGLTTTK--DGGVILCDNEKG-LLKVTE  121 (355)
Q Consensus        51 ~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g----~~-~~~~~~~~~-p~~gl~~d~--~g~L~v~~~~~g-l~~~~~  121 (355)
                      ...+.++++.+++..+.++. ++.|..++..++    +. ..+...... +. ++++.+  +|+++++...+| +..++.
T Consensus        18 ~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~-~~~~sp~~~~~~l~s~~~dg~v~vw~~   95 (615)
T 1pgu_A           18 RNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVT-TVKFSPIKGSQYLCSGDESGKVIVWGW   95 (615)
T ss_dssp             TTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEE-EEEECSSTTCCEEEEEETTSEEEEEEE
T ss_pred             cCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEE-EEEECcCCCCCEEEEecCCCEEEEEeC
Confidence            45678899997666666666 788999998777    43 333333345 67 899999  998666544445 444442


Q ss_pred             ---------CC--eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecccc
Q 018474          122 ---------EG--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFY  190 (355)
Q Consensus       122 ---------~g--~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~  190 (355)
                               ..  ...+......+.+++++++|+..++....             ....+.++.||. ......+.....
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~-------------~~~~~~v~~~d~-~~~~~~~~~~~~  161 (615)
T 1pgu_A           96 TFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEG-------------RDNFGVFISWDS-GNSLGEVSGHSQ  161 (615)
T ss_dssp             EEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECC-------------SSCSEEEEETTT-CCEEEECCSCSS
T ss_pred             CCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccC-------------CCCccEEEEEEC-CCcceeeecCCc
Confidence                     12  23333333678899999999765543320             011356777773 333444333334


Q ss_pred             ccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCC---CcCceEECCC-CCEEEEeecCCchhhHhhhc
Q 018474          191 FANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPG---GPDNINLAPD-GSFWIGLIKMNQTGVRAIQK  266 (355)
Q Consensus       191 ~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g---~p~~i~~d~~-G~lwv~~~~~~~~~~~~~~~  266 (355)
                      ....++++|+++.++++....+.|..|++...+  ....+. ....   ....+.++++ |++.++....          
T Consensus       162 ~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~--~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~d----------  228 (615)
T 1pgu_A          162 RINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK--FSASDR-THHKQGSFVRDVEFSPDSGEFVITVGSD----------  228 (615)
T ss_dssp             CEEEEEECSSSSCEEEEEETTTEEEEEETTTBE--EEEEEC-SSSCTTCCEEEEEECSTTCCEEEEEETT----------
T ss_pred             cEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcc--eeeeec-ccCCCCceEEEEEECCCCCCEEEEEeCC----------
Confidence            567899999998555666667889999864321  122222 2222   2445778888 8866655431          


Q ss_pred             chhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEE-E---CCCCCcccceeEEEEeCCEEEEeecCCCeEEE
Q 018474          267 CREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDF-N---DPDATYISFVTSAAEFDGNLYLASLQSNFIGI  342 (355)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~-~---~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~  342 (355)
                                                +.|..+|..+++.+..+ .   .+.+    .+..+...++++++.......|..
T Consensus       229 --------------------------g~i~vwd~~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~l~~~~~d~~i~~  278 (615)
T 1pgu_A          229 --------------------------RKISCFDGKSGEFLKYIEDDQEPVQG----GIFALSWLDSQKFATVGADATIRV  278 (615)
T ss_dssp             --------------------------CCEEEEETTTCCEEEECCBTTBCCCS----CEEEEEESSSSEEEEEETTSEEEE
T ss_pred             --------------------------CeEEEEECCCCCEeEEecccccccCC----ceEEEEEcCCCEEEEEcCCCcEEE
Confidence                                      35777886578877777 3   3222    344444434443343334677777


Q ss_pred             eeCCC
Q 018474          343 LPLDG  347 (355)
Q Consensus       343 ~~~~~  347 (355)
                      +++++
T Consensus       279 wd~~~  283 (615)
T 1pgu_A          279 WDVTT  283 (615)
T ss_dssp             EETTT
T ss_pred             EECCC
Confidence            77764

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=98.66  E-value=8.7e-06  Score=75.51  Aligned_cols=184  Identities=10%  Similarity=0.013  Sum_probs=116.2

Q ss_pred             CCCCceEEEee-CCCeEEEEecCCEEEEEEcCCCe--------eEEeeccCCCcccCeEECCCC-CEEEEeCCCc-EEEE
Q 018474           51 VNHPEDVSVVV-SKGALYTATRDGWVKYFILHNET--------LVNWKHIDSQSLLGLTTTKDG-GVILCDNEKG-LLKV  119 (355)
Q Consensus        51 ~~~p~~i~~d~-~~g~l~~~~~~g~i~~~~~~~g~--------~~~~~~~~~~p~~gl~~d~~g-~L~v~~~~~g-l~~~  119 (355)
                      -....++++.+ ++..|++++.+|.|..++..++.        ...+......+. ++++.++| +++++...++ +..+
T Consensus        81 ~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~p~~~~~l~s~~~dg~i~iw  159 (402)
T 2aq5_A           81 TAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVG-IVAWHPTAQNVLLSAGCDNVILVW  159 (402)
T ss_dssp             SSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEE-EEEECSSBTTEEEEEETTSCEEEE
T ss_pred             CCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEE-EEEECcCCCCEEEEEcCCCEEEEE
Confidence            34567889986 56778888899999999987663        223322334566 89999887 5555443444 6666


Q ss_pred             c-CCC--eEEE--cCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee-ccc--cc
Q 018474          120 T-EEG--VEAI--VPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGF--YF  191 (355)
Q Consensus       120 ~-~~g--~~~~--~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~-~~~--~~  191 (355)
                      + .++  ...+  ......+.+++++++|+++++...                 .+.+..||..+++..... ...  ..
T Consensus       160 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------------d~~i~iwd~~~~~~~~~~~~~~~~~~  222 (402)
T 2aq5_A          160 DVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR-----------------DKRVRVIEPRKGTVVAEKDRPHEGTR  222 (402)
T ss_dssp             ETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEET-----------------TSEEEEEETTTTEEEEEEECSSCSSS
T ss_pred             ECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEec-----------------CCcEEEEeCCCCceeeeeccCCCCCc
Confidence            6 455  5555  333367889999999976655332                 567999999887654333 222  23


Q ss_pred             cccEEEeCCCCEEEEEe--CCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEe
Q 018474          192 ANGIALSKNEDFVVVCE--SWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGL  253 (355)
Q Consensus       192 pngi~~~~dg~~l~v~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~  253 (355)
                      +..+++++|++.++.+.  ...+.|..|+++........... ........+.++++|++.+.+
T Consensus       223 ~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~  285 (402)
T 2aq5_A          223 PVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL-DTSSGVLLPFFDPDTNIVYLC  285 (402)
T ss_dssp             CCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC-CCCSSCEEEEEETTTTEEEEE
T ss_pred             ceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec-cCCCceeEEEEcCCCCEEEEE
Confidence            57899999998554442  45678888988643221111111 122234567788999866544

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=98.66  E-value=1.9e-05  Score=69.76  Aligned_cols=231  Identities=14%  Similarity=0.102  Sum_probs=140.3

Q ss_pred             CCCceEEEeeCCCeEEEEecCCEEEEEEcCCC---e-eEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEcCCC-eEE
Q 018474           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNE---T-LVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEEG-VEA  126 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g---~-~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~~g-~~~  126 (355)
                      ....++++.+++..++++..+|.|..++..+.   + ...+........ .+.++ .+.|+.+...+.+..++... ...
T Consensus        60 ~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~  137 (313)
T 3odt_A           60 GFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVC-SLSFQ-DGVVISGSWDKTAKVWKEGSLVYN  137 (313)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEE-EEEEE-TTEEEEEETTSEEEEEETTEEEEE
T ss_pred             ccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEE-EEEec-CCEEEEEeCCCCEEEEcCCcEEEe
Confidence            55678899977788888999999988886443   2 222222233455 77773 33455555444455555322 444


Q ss_pred             EcCCcCCcccEEEcc-CCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeec-cccccccEEEeCCCCEE
Q 018474          127 IVPDASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE-GFYFANGIALSKNEDFV  204 (355)
Q Consensus       127 ~~~~~~~~~~l~~d~-dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~-~~~~pngi~~~~dg~~l  204 (355)
                      +......+.++.+.+ +++..++...                 .+.+..||.. .....+.. .......++++++++ +
T Consensus       138 ~~~~~~~v~~~~~~~~~~~~l~~~~~-----------------d~~i~i~d~~-~~~~~~~~~~~~~i~~~~~~~~~~-~  198 (313)
T 3odt_A          138 LQAHNASVWDAKVVSFSENKFLTASA-----------------DKTIKLWQND-KVIKTFSGIHNDVVRHLAVVDDGH-F  198 (313)
T ss_dssp             EECCSSCEEEEEEEETTTTEEEEEET-----------------TSCEEEEETT-EEEEEECSSCSSCEEEEEEEETTE-E
T ss_pred             cccCCCceeEEEEccCCCCEEEEEEC-----------------CCCEEEEecC-ceEEEEeccCcccEEEEEEcCCCe-E
Confidence            444335677777776 6665554332                 4568888832 22333322 334457789999987 4


Q ss_pred             EEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcc
Q 018474          205 VVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLL  284 (355)
Q Consensus       205 ~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (355)
                      + +....+.|..|+++...  ....+. ...+....+.++++|.+..+...                             
T Consensus       199 ~-~~~~dg~i~i~d~~~~~--~~~~~~-~~~~~i~~~~~~~~~~l~~~~~d-----------------------------  245 (313)
T 3odt_A          199 I-SCSNDGLIKLVDMHTGD--VLRTYE-GHESFVYCIKLLPNGDIVSCGED-----------------------------  245 (313)
T ss_dssp             E-EEETTSEEEEEETTTCC--EEEEEE-CCSSCEEEEEECTTSCEEEEETT-----------------------------
T ss_pred             E-EccCCCeEEEEECCchh--hhhhhh-cCCceEEEEEEecCCCEEEEecC-----------------------------
Confidence            4 44567889999985432  122222 23334566788888876665543                             


Q ss_pred             cCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEe-CCEEEEeecCCCeEEEeeCCCCC
Q 018474          285 LPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-DGNLYLASLQSNFIGILPLDGPE  349 (355)
Q Consensus       285 ~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~~~~~~  349 (355)
                              +.|..+|..+++....+..+.+    .+..+... ++++..++ ..+.|..+++....
T Consensus       246 --------g~v~iwd~~~~~~~~~~~~~~~----~i~~~~~~~~~~~~~~~-~dg~i~iw~~~~~~  298 (313)
T 3odt_A          246 --------RTVRIWSKENGSLKQVITLPAI----SIWSVDCMSNGDIIVGS-SDNLVRIFSQEKSR  298 (313)
T ss_dssp             --------SEEEEECTTTCCEEEEEECSSS----CEEEEEECTTSCEEEEE-TTSCEEEEESCGGG
T ss_pred             --------CEEEEEECCCCceeEEEeccCc----eEEEEEEccCCCEEEEe-CCCcEEEEeCCCCc
Confidence                    4688888768888888876654    35556554 46655544 47889888877643

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=98.65  E-value=4.4e-05  Score=68.55  Aligned_cols=184  Identities=8%  Similarity=0.111  Sum_probs=114.7

Q ss_pred             CCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEE-eeccCCCcccCeEECCCCCEEEEeCCCcEE-EEcCCC--e
Q 018474           49 GCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVN-WKHIDSQSLLGLTTTKDGGVILCDNEKGLL-KVTEEG--V  124 (355)
Q Consensus        49 ~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~-~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~-~~~~~g--~  124 (355)
                      +.-..-.++++.+++..+..++.++.|..+|..+++... +......+. ++++++++.++++...++.+ .++..+  +
T Consensus        63 ~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~  141 (319)
T 3frx_A           63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVM-SVDIDKKASMIISGSRDKTIKVWTIKGQCL  141 (319)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE-EEEECTTSCEEEEEETTSCEEEEETTSCEE
T ss_pred             CCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEE-EEEEcCCCCEEEEEeCCCeEEEEECCCCeE
Confidence            333445677888667778888999999999998887543 332334566 88999999877665555544 445444  5


Q ss_pred             EEEcCCcCCcccEEEccC------CcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecc-ccccccEEE
Q 018474          125 EAIVPDASFTNDVIAASD------GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG-FYFANGIAL  197 (355)
Q Consensus       125 ~~~~~~~~~~~~l~~d~d------G~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~-~~~pngi~~  197 (355)
                      ..+......+..+.+.+.      +.+.++.+                 ..+.+..||..+.+......+ ....+.+++
T Consensus       142 ~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~-----------------~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~  204 (319)
T 3frx_A          142 ATLLGHNDWVSQVRVVPNEKADDDSVTIISAG-----------------NDKMVKAWNLNQFQIEADFIGHNSNINTLTA  204 (319)
T ss_dssp             EEECCCSSCEEEEEECCC------CCEEEEEE-----------------TTSCEEEEETTTTEEEEEECCCCSCEEEEEE
T ss_pred             EEEeccCCcEEEEEEccCCCCCCCccEEEEEe-----------------CCCEEEEEECCcchhheeecCCCCcEEEEEE
Confidence            554444355667777663      33444322                 256788888877765433322 234578999


Q ss_pred             eCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474          198 SKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       198 ~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      +||++.+. +....+.|..|++...+  ....+.  .......+.++++|.+.++...
T Consensus       205 sp~g~~l~-s~~~dg~i~iwd~~~~~--~~~~~~--~~~~v~~~~~sp~~~~la~~~~  257 (319)
T 3frx_A          205 SPDGTLIA-SAGKDGEIMLWNLAAKK--AMYTLS--AQDEVFSLAFSPNRYWLAAATA  257 (319)
T ss_dssp             CTTSSEEE-EEETTCEEEEEETTTTE--EEEEEE--CCSCEEEEEECSSSSEEEEEET
T ss_pred             cCCCCEEE-EEeCCCeEEEEECCCCc--EEEEec--CCCcEEEEEEcCCCCEEEEEcC
Confidence            99999554 44456789889875432  112221  1222456788999977665543

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=98.64  E-value=1.4e-07  Score=90.39  Aligned_cols=73  Identities=18%  Similarity=0.149  Sum_probs=55.7

Q ss_pred             cCCcccEEEccCCcEEE-EeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecc--ccccccEEEeCCCCEEEEE
Q 018474          131 ASFTNDVIAASDGTLYF-TVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG--FYFANGIALSKNEDFVVVC  207 (355)
Q Consensus       131 ~~~~~~l~~d~dG~ly~-~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~--~~~pngi~~~~dg~~l~v~  207 (355)
                      ++.|++|++|++|+||| +|...  +..    ..+++.....+|+++|.+++++.+...  ...|||++++||++.||++
T Consensus       475 fnsPDnL~fd~~G~LWf~TD~~~--~~~----g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~  548 (592)
T 4a9v_A          475 FNSPDGLGFDKAGRLWILTDGDS--SNA----GDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             CCCEEEEEECTTCCEEEEECCCC--CCS----GGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred             cCCCCceEECCCCCEEEEeCCCc--Ccc----ccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence            38899999999999999 77542  111    112233355899999999999888754  3568999999999999997


Q ss_pred             eC
Q 018474          208 ES  209 (355)
Q Consensus       208 ~~  209 (355)
                      -.
T Consensus       549 vQ  550 (592)
T 4a9v_A          549 IQ  550 (592)
T ss_dssp             EE
T ss_pred             Ee
Confidence            53

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=98.64  E-value=2e-06  Score=78.97  Aligned_cols=181  Identities=11%  Similarity=0.034  Sum_probs=104.9

Q ss_pred             CCceEEEeeCCCeEEEEec------CCEEEEEEcCCCeeEE-----eeccCCCcccCeEECCCCCEEEEeCCCcEEEEc-
Q 018474           53 HPEDVSVVVSKGALYTATR------DGWVKYFILHNETLVN-----WKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT-  120 (355)
Q Consensus        53 ~p~~i~~d~~~g~l~~~~~------~g~i~~~~~~~g~~~~-----~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~-  120 (355)
                      .-.++++.|++..|..++.      ++.|..++..++....     .......+. .+++.++++++++...+.+..++ 
T Consensus        44 ~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~-~~~~s~d~~~l~~s~dg~v~lWd~  122 (357)
T 4g56_B           44 QIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVT-DVAWVSEKGILVASDSGAVELWEI  122 (357)
T ss_dssp             EEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEE-EEEEETTTEEEEEETTSCEEEC--
T ss_pred             CEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEE-EEEEcCCCCEEEEECCCEEEEeec
Confidence            3568899976666666665      5677777765553211     111123366 88999999988887554444444 


Q ss_pred             CCC--eE--E--EcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecc-ccccc
Q 018474          121 EEG--VE--A--IVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG-FYFAN  193 (355)
Q Consensus       121 ~~g--~~--~--~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~-~~~pn  193 (355)
                      .++  ..  .  .......++++++.++|+..++.+.                 .+.+..||.++++....... ....+
T Consensus       123 ~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~-----------------dg~v~iwd~~~~~~~~~~~~h~~~v~  185 (357)
T 4g56_B          123 LEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGK-----------------DFSVKVWDLSQKAVLKSYNAHSSEVN  185 (357)
T ss_dssp             ------CCCCEEECCCSSCEEEEEECSSSSEEEEEET-----------------TSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred             cccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeC-----------------CCeEEEEECCCCcEEEEEcCCCCCEE
Confidence            333  11  1  1112256889999999987776433                 45788899888865443332 33456


Q ss_pred             cEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCC-CEEEE
Q 018474          194 GIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDG-SFWIG  252 (355)
Q Consensus       194 gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G-~lwv~  252 (355)
                      .++++++++.++++....+.|..|+++..+......+. .....+..+.+.+++ +++++
T Consensus       186 ~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~-~~~~~v~~v~~sp~~~~~la~  244 (357)
T 4g56_B          186 CVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFC-ASDTIPTSVTWHPEKDDTFAC  244 (357)
T ss_dssp             EEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCT-TCCSCEEEEEECTTSTTEEEE
T ss_pred             EEEEccCCCceeeeeccCCceEEEECCCCceeeeeeec-cccccccchhhhhcccceEEE
Confidence            78999998766666666778888887543211111111 112234556677664 45543

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=98.62  E-value=2.7e-06  Score=80.12  Aligned_cols=184  Identities=10%  Similarity=0.068  Sum_probs=114.1

Q ss_pred             CCceEEEeeCC-CeEEEEecCCEEEEEEcCCCeeEEeec---cCCCcccCeEECC-CCCEEEEeCCCcEEEE-cC-CC-e
Q 018474           53 HPEDVSVVVSK-GALYTATRDGWVKYFILHNETLVNWKH---IDSQSLLGLTTTK-DGGVILCDNEKGLLKV-TE-EG-V  124 (355)
Q Consensus        53 ~p~~i~~d~~~-g~l~~~~~~g~i~~~~~~~g~~~~~~~---~~~~p~~gl~~d~-~g~L~v~~~~~gl~~~-~~-~g-~  124 (355)
                      .-.+|++.|.+ ..|.+|+.+|.|..+|..+++......   ..+.+. ++++.+ +++++++...+|.+++ +- .+ .
T Consensus       121 ~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~-~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~  199 (435)
T 4e54_B          121 RATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSIT-GLKFNPLNTNQFYASSMEGTTRLQDFKGNIL  199 (435)
T ss_dssp             CEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCC-EEEECSSCTTEEEEECSSSCEEEEETTSCEE
T ss_pred             CEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEE-EEEEeCCCCCEEEEEeCCCEEEEeeccCCce
Confidence            35689998744 457788999999999986665433322   234567 899985 6776666555564544 53 44 4


Q ss_pred             EEEcCCc---CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCC
Q 018474          125 EAIVPDA---SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNE  201 (355)
Q Consensus       125 ~~~~~~~---~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg  201 (355)
                      +.+....   ..+..+.++++|.+.++...                 .+.+..||.+++.+..+.......+.++++|++
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~-----------------dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~  262 (435)
T 4e54_B          200 RVFASSDTINIWFCSLDVSASSRMVVTGDN-----------------VGNVILLNMDGKELWNLRMHKKKVTHVALNPCC  262 (435)
T ss_dssp             EEEECCSSCSCCCCCEEEETTTTEEEEECS-----------------SSBEEEEESSSCBCCCSBCCSSCEEEEEECTTC
T ss_pred             eEEeccCCCCccEEEEEECCCCCEEEEEeC-----------------CCcEeeeccCcceeEEEecccceEEeeeecCCC
Confidence            4443321   45677899999987776433                 567888888665543333222335678999998


Q ss_pred             CEEEEEeCCCCeEEEEEeCCCCC-cceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474          202 DFVVVCESWKFRCRRYWLKGDRA-GILDAFIENLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       202 ~~l~v~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      +.++++....+.|..|++..... ....... ........+.++++|++.++...
T Consensus       263 ~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~spdg~~l~s~~~  316 (435)
T 4e54_B          263 DWFLATASVDQTVKIWDLRQVRGKASFLYSL-PHRHPVNAACFSPDGARLLTTDQ  316 (435)
T ss_dssp             SSEEEEEETTSBCCEEETTTCCSSSCCSBCC-BCSSCEEECCBCTTSSEEEEEES
T ss_pred             ceEEEEecCcceeeEEecccccccceEEEee-eccccccceeECCCCCeeEEEcC
Confidence            86777766677888888754321 1111000 11122344667888887666544

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=98.62  E-value=7.5e-05  Score=68.49  Aligned_cols=240  Identities=9%  Similarity=-0.006  Sum_probs=138.4

Q ss_pred             CCCCceEEEee-CCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECC---CCCE-EEEeCCCcEEEEc-CCC-
Q 018474           51 VNHPEDVSVVV-SKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTK---DGGV-ILCDNEKGLLKVT-EEG-  123 (355)
Q Consensus        51 ~~~p~~i~~d~-~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~---~g~L-~v~~~~~gl~~~~-~~g-  123 (355)
                      -....++++.+ .+..+++++.+|.|..++..+++............ .+.+.+   ++.+ +++...+.+..++ .++ 
T Consensus        99 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~  177 (408)
T 4a11_B           99 RYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVY-SHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS  177 (408)
T ss_dssp             SSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEE-EEEECSSCSSCCEEEEEESSSSEEEEESSSSC
T ss_pred             CCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCcee-eeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc
Confidence            35567888886 34567778889999999998887655444344455 666654   3444 4455444566777 445 


Q ss_pred             -eEEEcCCcCCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCe--EEEe--------------
Q 018474          124 -VEAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE--TTVL--------------  185 (355)
Q Consensus       124 -~~~~~~~~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~--~~~~--------------  185 (355)
                       ...+......+.++++++++. ++++...                 .+.+..||..+++  ...+              
T Consensus       178 ~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~-----------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  240 (408)
T 4a11_B          178 CSHILQGHRQEILAVSWSPRYDYILATASA-----------------DSRVKLWDVRRASGCLITLDQHNGKKSQAVESA  240 (408)
T ss_dssp             CCEEECCCCSCEEEEEECSSCTTEEEEEET-----------------TSCEEEEETTCSSCCSEECCTTTTCSCCCTTTS
T ss_pred             eeeeecCCCCcEEEEEECCCCCcEEEEEcC-----------------CCcEEEEECCCCCcccccccccccccceeeccc
Confidence             555554446788899999985 5555332                 4557777765442  1111              


Q ss_pred             -eccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcce-eEec-c-cCCCCcCceEECCCCCEEEEeecCCchhh
Q 018474          186 -HEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGIL-DAFI-E-NLPGGPDNINLAPDGSFWIGLIKMNQTGV  261 (355)
Q Consensus       186 -~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~-~~~~-~-~~~g~p~~i~~d~~G~lwv~~~~~~~~~~  261 (355)
                       .........++++|+++.++.+. ..+.|..|++........ .... . ......-....+..+.+.++...      
T Consensus       241 ~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  313 (408)
T 4a11_B          241 NTAHNGKVNGLCFTSDGLHLLTVG-TDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYG------  313 (408)
T ss_dssp             SCSCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEET------
T ss_pred             cccccCceeEEEEcCCCCEEEEec-CCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecC------
Confidence             01112346789999999666655 567899999864321110 0000 0 00011111223334455555443      


Q ss_pred             HhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeC-CEEEEeecCCCeE
Q 018474          262 RAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFD-GNLYLASLQSNFI  340 (355)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~-g~L~v~~~~~~~i  340 (355)
                                                     +.|..+|..+++.+..+..+.+    .++.+.... +++.++......|
T Consensus       314 -------------------------------~~i~v~d~~~~~~~~~~~~~~~----~v~~~~~s~~~~~l~s~~~dg~i  358 (408)
T 4a11_B          314 -------------------------------STIAVYTVYSGEQITMLKGHYK----TVDCCVFQSNFQELYSGSRDCNI  358 (408)
T ss_dssp             -------------------------------TEEEEEETTTCCEEEEECCCSS----CEEEEEEETTTTEEEEEETTSCE
T ss_pred             -------------------------------CEEEEEECcCCcceeeeccCCC----eEEEEEEcCCCCEEEEECCCCeE
Confidence                                           3688888767888888865544    455565543 4444444447788


Q ss_pred             EEeeCCCCCC
Q 018474          341 GILPLDGPEP  350 (355)
Q Consensus       341 ~~~~~~~~~~  350 (355)
                      ...++....+
T Consensus       359 ~iw~~~~~~~  368 (408)
T 4a11_B          359 LAWVPSLYEP  368 (408)
T ss_dssp             EEEEECC---
T ss_pred             EEEeCCCCCc
Confidence            8888776543

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=98.61  E-value=3.7e-05  Score=72.53  Aligned_cols=193  Identities=13%  Similarity=0.092  Sum_probs=112.4

Q ss_pred             cccCeEECCCCCEE-EEeCCCc-EEEEc-C--CC--eEEEcC--CcCCcccEEEccCCcEEEEeCCCCCCCccccccccc
Q 018474           95 SLLGLTTTKDGGVI-LCDNEKG-LLKVT-E--EG--VEAIVP--DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAE  165 (355)
Q Consensus        95 p~~gl~~d~~g~L~-v~~~~~g-l~~~~-~--~g--~~~~~~--~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~  165 (355)
                      +. ++++.++|+.+ ++....| +..++ .  ++  .+.+..  ....+.+++++++|...++...              
T Consensus       105 v~-~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~--------------  169 (450)
T 2vdu_B          105 IR-NLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADK--------------  169 (450)
T ss_dssp             EE-EEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEET--------------
T ss_pred             eE-EEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeC--------------
Confidence            56 78899999864 5443444 44444 3  45  444432  2256889999999965544322              


Q ss_pred             cCCCCeEEEEeCCCCeEE-----EeeccccccccEEEeCC---CCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCC
Q 018474          166 GKPYGQLRKYDPKLKETT-----VLHEGFYFANGIALSKN---EDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGG  237 (355)
Q Consensus       166 ~~~~g~l~~~dp~~~~~~-----~~~~~~~~pngi~~~~d---g~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~  237 (355)
                         .+.++.|+..+++..     .+.........++++||   ++.++.+ ...+.|..|++....  ....+.....+.
T Consensus       170 ---~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~-~~d~~i~vwd~~~~~--~~~~~~~~h~~~  243 (450)
T 2vdu_B          170 ---FGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITS-DRDEHIKISHYPQCF--IVDKWLFGHKHF  243 (450)
T ss_dssp             ---TSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEE-ETTSCEEEEEESCTT--CEEEECCCCSSC
T ss_pred             ---CCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEE-cCCCcEEEEECCCCc--eeeeeecCCCCc
Confidence               456788876554432     11222234567899999   7755554 456789999985432  122223233344


Q ss_pred             cCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCC----
Q 018474          238 PDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPD----  313 (355)
Q Consensus       238 p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~----  313 (355)
                      ...+.+. +|++.++....                                    +.|..+|..+|+.+..+....    
T Consensus       244 v~~~~~s-d~~~l~s~~~d------------------------------------~~v~vwd~~~~~~~~~~~~~~~~~~  286 (450)
T 2vdu_B          244 VSSICCG-KDYLLLSAGGD------------------------------------DKIFAWDWKTGKNLSTFDYNSLIKP  286 (450)
T ss_dssp             EEEEEEC-STTEEEEEESS------------------------------------SEEEEEETTTCCEEEEEECHHHHGG
T ss_pred             eEEEEEC-CCCEEEEEeCC------------------------------------CeEEEEECCCCcEeeeecchhhhhh
Confidence            5667888 88877766442                                    356667765677666664210    


Q ss_pred             ----------------C-CcccceeEEEEe--CCEEEEeecCCCeEEEeeC
Q 018474          314 ----------------A-TYISFVTSAAEF--DGNLYLASLQSNFIGILPL  345 (355)
Q Consensus       314 ----------------g-~~~~~~~~~~~~--~g~L~v~~~~~~~i~~~~~  345 (355)
                                      + .....+..+...  +..|++++-..+.|..+++
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          287 YLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             GCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred             hhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence                            0 001123444433  4567777756778888877

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=98.61  E-value=4.5e-05  Score=67.34  Aligned_cols=231  Identities=11%  Similarity=0.095  Sum_probs=136.5

Q ss_pred             CCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeec-cCCCcccCeEECCCCCEEEEeCCCc-EEEEc--C--C
Q 018474           49 GCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH-IDSQSLLGLTTTKDGGVILCDNEKG-LLKVT--E--E  122 (355)
Q Consensus        49 ~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~-~~~~p~~gl~~d~~g~L~v~~~~~g-l~~~~--~--~  122 (355)
                      +.-..-.++++ ++++.+++++.+|.|..++..+++...... ....+. .+++.++++++++....| +..++  .  .
T Consensus        16 ~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~   93 (313)
T 3odt_A           16 GHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLN-SVCYDSEKELLLFGGKDTMINGVPLFATSG   93 (313)
T ss_dssp             CCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEE-EEEEETTTTEEEEEETTSCEEEEETTCCTT
T ss_pred             CCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEE-EEEECCCCCEEEEecCCCeEEEEEeeecCC
Confidence            44456677888 588899999999999999997776544332 244566 899999988665544545 44343  2  1


Q ss_pred             C--eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeC-
Q 018474          123 G--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSK-  199 (355)
Q Consensus       123 g--~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~-  199 (355)
                      +  ...+......+.++.+  ++++.++.+.                 .+.+..||. ......+.........+++.+ 
T Consensus        94 ~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~-----------------d~~i~~~d~-~~~~~~~~~~~~~v~~~~~~~~  153 (313)
T 3odt_A           94 EDPLYTLIGHQGNVCSLSF--QDGVVISGSW-----------------DKTAKVWKE-GSLVYNLQAHNASVWDAKVVSF  153 (313)
T ss_dssp             SCC-CEECCCSSCEEEEEE--ETTEEEEEET-----------------TSEEEEEET-TEEEEEEECCSSCEEEEEEEET
T ss_pred             CCcccchhhcccCEEEEEe--cCCEEEEEeC-----------------CCCEEEEcC-CcEEEecccCCCceeEEEEccC
Confidence            2  3333333355666766  3444444322                 467888882 223333333333345677777 


Q ss_pred             CCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccc
Q 018474          200 NEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPG  279 (355)
Q Consensus       200 dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (355)
                      +++.++.+ ...+.|..|+..    .....+..........+.+.++|.+.++...                        
T Consensus       154 ~~~~l~~~-~~d~~i~i~d~~----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d------------------------  204 (313)
T 3odt_A          154 SENKFLTA-SADKTIKLWQND----KVIKTFSGIHNDVVRHLAVVDDGHFISCSND------------------------  204 (313)
T ss_dssp             TTTEEEEE-ETTSCEEEEETT----EEEEEECSSCSSCEEEEEEEETTEEEEEETT------------------------
T ss_pred             CCCEEEEE-ECCCCEEEEecC----ceEEEEeccCcccEEEEEEcCCCeEEEccCC------------------------
Confidence            77755555 456788888731    1222222113333455777788875555433                        


Q ss_pred             hhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeC-CEEEEeecCCCeEEEeeCCCC
Q 018474          280 LISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFD-GNLYLASLQSNFIGILPLDGP  348 (355)
Q Consensus       280 ~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~-g~L~v~~~~~~~i~~~~~~~~  348 (355)
                                   +.|..+|..+++.+..+..+.+    .++.+.... ++|+.++. .+.|..+++.+.
T Consensus       205 -------------g~i~i~d~~~~~~~~~~~~~~~----~i~~~~~~~~~~l~~~~~-dg~v~iwd~~~~  256 (313)
T 3odt_A          205 -------------GLIKLVDMHTGDVLRTYEGHES----FVYCIKLLPNGDIVSCGE-DRTVRIWSKENG  256 (313)
T ss_dssp             -------------SEEEEEETTTCCEEEEEECCSS----CEEEEEECTTSCEEEEET-TSEEEEECTTTC
T ss_pred             -------------CeEEEEECCchhhhhhhhcCCc----eEEEEEEecCCCEEEEec-CCEEEEEECCCC
Confidence                         4577788756787777766554    355555543 55555544 667777776554

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.61  E-value=3.7e-05  Score=70.55  Aligned_cols=193  Identities=17%  Similarity=0.169  Sum_probs=111.9

Q ss_pred             EEEeeCCCeEEEEec-CC--EEEEEEcCCCeeEEeeccCC-CcccCeEECCCCC-EEEEeCCCcEEEEcC-CC-eEEEcC
Q 018474           57 VSVVVSKGALYTATR-DG--WVKYFILHNETLVNWKHIDS-QSLLGLTTTKDGG-VILCDNEKGLLKVTE-EG-VEAIVP  129 (355)
Q Consensus        57 i~~d~~~g~l~~~~~-~g--~i~~~~~~~g~~~~~~~~~~-~p~~gl~~d~~g~-L~v~~~~~gl~~~~~-~g-~~~~~~  129 (355)
                      .++.|++..|+.... +|  .|+.++..+++...+..... ... +.++.++|+ |+++.....++.++. ++ .+.+..
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~-~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~  119 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTF-GGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQ  119 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSS-SCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCcc-ceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeee
Confidence            457766766666655 55  59999998888777654332 234 678999996 666665557888884 55 443322


Q ss_pred             C-cCCcc--cEEEccCCcEEEEeCC--CCCC-Cccc--cccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeC-C
Q 018474          130 D-ASFTN--DVIAASDGTLYFTVAS--TKYT-PTDF--YKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSK-N  200 (355)
Q Consensus       130 ~-~~~~~--~l~~d~dG~ly~~d~~--~~~~-~~~~--~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~-d  200 (355)
                      . .....  ....+++|++.++...  ..+. ...+  ....+.......|+.+|.++++.+.+.........++++| |
T Consensus       120 ~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~d  199 (388)
T 3pe7_A          120 VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYD  199 (388)
T ss_dssp             CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTE
T ss_pred             chhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCC
Confidence            1 12221  2345788876654211  0000 0000  0111223334689999999998877765544567889999 9


Q ss_pred             CCEEEEEeCC-----CCeEEEEEeCCCCCcceeEecccCCC-CcCceEECCCCC-EEEEe
Q 018474          201 EDFVVVCESW-----KFRCRRYWLKGDRAGILDAFIENLPG-GPDNINLAPDGS-FWIGL  253 (355)
Q Consensus       201 g~~l~v~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~g-~p~~i~~d~~G~-lwv~~  253 (355)
                      |+.+.++...     ..+|+.++.++...   +.+.....+ ......+++||+ |....
T Consensus       200 g~~l~~~~~~~~~~~~~~l~~~d~~~~~~---~~l~~~~~~~~~~~~~~spdg~~l~~~~  256 (388)
T 3pe7_A          200 DSTVAFCHEGPHDLVDARMWLINEDGTNM---RKVKTHAEGESCTHEFWVPDGSALVYVS  256 (388)
T ss_dssp             EEEEEEEECSCTTTSSCSEEEEETTSCCC---EESCCCCTTEEEEEEEECTTSSCEEEEE
T ss_pred             CCEEEEEEecCCCCCcceEEEEeCCCCce---EEeeeCCCCcccccceECCCCCEEEEEe
Confidence            9877666543     34899998765322   222211111 122356888996 53333

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=98.59  E-value=3.4e-05  Score=72.79  Aligned_cols=150  Identities=11%  Similarity=0.084  Sum_probs=96.5

Q ss_pred             CCceEEEeeCCCeE-EEEecCCEEEEEEcC--CCeeEEee---ccCCCcccCeEECCCCCE-EEEeCCCcEEEEc-CCC-
Q 018474           53 HPEDVSVVVSKGAL-YTATRDGWVKYFILH--NETLVNWK---HIDSQSLLGLTTTKDGGV-ILCDNEKGLLKVT-EEG-  123 (355)
Q Consensus        53 ~p~~i~~d~~~g~l-~~~~~~g~i~~~~~~--~g~~~~~~---~~~~~p~~gl~~d~~g~L-~v~~~~~gl~~~~-~~g-  123 (355)
                      ...++++.+++..| +++..+|.|..++..  +++.....   .....+. +++++++|+. ++++..+.++.++ .++ 
T Consensus       104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~-~~~~sp~~~~l~~~~~~g~v~~~~~~~~~  182 (450)
T 2vdu_B          104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPN-AISIAEDDTTVIIADKFGDVYSIDINSIP  182 (450)
T ss_dssp             CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEE-EEEECTTSSEEEEEETTSEEEEEETTSCC
T ss_pred             ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCce-EEEEcCCCCEEEEEeCCCcEEEEecCCcc
Confidence            46789999766665 556678999999987  66543332   2235577 8999999874 5555444566676 344 


Q ss_pred             -eE----EEcCCcCCcccEEEccC---CcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeE-EEee-ccccccc
Q 018474          124 -VE----AIVPDASFTNDVIAASD---GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKET-TVLH-EGFYFAN  193 (355)
Q Consensus       124 -~~----~~~~~~~~~~~l~~d~d---G~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~-~~~~-~~~~~pn  193 (355)
                       ..    .+......+.+++++++   |++.++.+.                 .+.+..||..+++. ..+. .......
T Consensus       183 ~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~-----------------d~~i~vwd~~~~~~~~~~~~~h~~~v~  245 (450)
T 2vdu_B          183 EEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDR-----------------DEHIKISHYPQCFIVDKWLFGHKHFVS  245 (450)
T ss_dssp             CSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEET-----------------TSCEEEEEESCTTCEEEECCCCSSCEE
T ss_pred             cccccceeeecccCceEEEEEcCCCCCCcEEEEEcC-----------------CCcEEEEECCCCceeeeeecCCCCceE
Confidence             22    22222257888999999   866665433                 45677777766643 2322 2223457


Q ss_pred             cEEEeCCCCEEEEEeCCCCeEEEEEeCCC
Q 018474          194 GIALSKNEDFVVVCESWKFRCRRYWLKGD  222 (355)
Q Consensus       194 gi~~~~dg~~l~v~~~~~~~i~~~~~~~~  222 (355)
                      .++++ |++.++.+. ..+.|..|++...
T Consensus       246 ~~~~s-d~~~l~s~~-~d~~v~vwd~~~~  272 (450)
T 2vdu_B          246 SICCG-KDYLLLSAG-GDDKIFAWDWKTG  272 (450)
T ss_dssp             EEEEC-STTEEEEEE-SSSEEEEEETTTC
T ss_pred             EEEEC-CCCEEEEEe-CCCeEEEEECCCC
Confidence            88999 999666554 6678999998643

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.59  E-value=9.9e-05  Score=69.52  Aligned_cols=176  Identities=9%  Similarity=-0.008  Sum_probs=103.0

Q ss_pred             ceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeec-cCCCcccCeEECCCCCEEEEeCCCcEEEEc-CCC--eEEEcCC
Q 018474           55 EDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH-IDSQSLLGLTTTKDGGVILCDNEKGLLKVT-EEG--VEAIVPD  130 (355)
Q Consensus        55 ~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~-~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~-~~g--~~~~~~~  130 (355)
                      .++..+  ++.+++++.+|.|..+|..+++...... ..+.+. .+++.+++.|..+...+.+..++ .++  ...+...
T Consensus       126 ~~~~~~--~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~-~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h  202 (464)
T 3v7d_B          126 TCLQFE--DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVW-ALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGH  202 (464)
T ss_dssp             EEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEECSTTEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             EEEEEC--CCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEE-EEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEECCC
Confidence            355554  6788899999999999998887554332 234566 88888888666666555566666 456  4555444


Q ss_pred             cCCcccEEEc--cCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEE-----------------------Ee
Q 018474          131 ASFTNDVIAA--SDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT-----------------------VL  185 (355)
Q Consensus       131 ~~~~~~l~~d--~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~-----------------------~~  185 (355)
                      ...+..+.+.  +++.+.++.+.                 .+.+..||..+++..                       ..
T Consensus       203 ~~~v~~l~~~~~~~~~~l~s~s~-----------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (464)
T 3v7d_B          203 NSTVRCLDIVEYKNIKYIVTGSR-----------------DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV  265 (464)
T ss_dssp             SSCEEEEEEEESSSCEEEEEEET-----------------TSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEE
T ss_pred             CCccEEEEEecCCCCCEEEEEcC-----------------CCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEE
Confidence            4567777776  45655554332                 345556665443311                       00


Q ss_pred             eccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474          186 HEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       186 ~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      .. .....-.+++++++.++.+. ..+.|..|++...+  ....+. ........+.++++|++.++...
T Consensus       266 ~~-~~~~~v~~~~~~~~~l~~~~-~d~~i~vwd~~~~~--~~~~~~-~~~~~v~~~~~~~~~~~l~sg~~  330 (464)
T 3v7d_B          266 LR-GHMASVRTVSGHGNIVVSGS-YDNTLIVWDVAQMK--CLYILS-GHTDRIYSTIYDHERKRCISASM  330 (464)
T ss_dssp             EC-CCSSCEEEEEEETTEEEEEE-TTSCEEEEETTTTE--EEEEEC-CCSSCEEEEEEETTTTEEEEEET
T ss_pred             cc-CccceEEEEcCCCCEEEEEe-CCCeEEEEECCCCc--EEEEec-CCCCCEEEEEEcCCCCEEEEEeC
Confidence            11 11122345678888665554 56789999975321  122222 22233455678888886665544

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=98.59  E-value=1.4e-05  Score=71.65  Aligned_cols=214  Identities=10%  Similarity=0.162  Sum_probs=132.3

Q ss_pred             CCCeEEEEec--CCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCC--------------CcEEEEcCCC--
Q 018474           62 SKGALYTATR--DGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNE--------------KGLLKVTEEG--  123 (355)
Q Consensus        62 ~~g~l~~~~~--~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~--------------~gl~~~~~~g--  123 (355)
                      +++.+|....  +++|++++......+++...  .+. .|..+ ++.||.+...              ..|++++.+|  
T Consensus        24 ~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~~--~~~-~i~~~-g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~   99 (302)
T 3s25_A           24 SDGEVFFSNTNDNGRLYAMNIDGSNIHKLSND--TAM-YINAD-KNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHG   99 (302)
T ss_dssp             ETTEEEEEEGGGTTEEEEEETTSCSCEEEEEE--EEE-EEEEC-SSEEEEEEECC------CCSSCCSEEEEEEETTSCC
T ss_pred             eCCEEEEEeCCCCceEEEEcCCCCCCEEccCC--cee-eEEEc-CCEEEEEECCCCcccccceeccCCCeEEEEeCCCCc
Confidence            4888998764  68899999844455554331  233 45554 4467766432              2488888655  


Q ss_pred             eEEEcCCcCCcccEEEccCC-cEEEEe-CCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCC
Q 018474          124 VEAIVPDASFTNDVIAASDG-TLYFTV-ASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNE  201 (355)
Q Consensus       124 ~~~~~~~~~~~~~l~~d~dG-~ly~~d-~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg  201 (355)
                      .+.+....    +..+.++| .||+++ +.               .....|++.+.++.+.+.+.....    .++++++
T Consensus       100 ~~~l~~~~----~~~~s~~g~~Iy~~~~~~---------------~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g  156 (302)
T 3s25_A          100 STVLDPDP----CIYASLIGNYIYYLHYDT---------------QTATSLYRIRIDGEEKKKIKNHYL----FTCNTSD  156 (302)
T ss_dssp             CEEEECSC----EEEEEEETTEEEEEEESS---------------SSCEEEEEEETTSCCCEEEESSCC----CCSEEET
T ss_pred             ceEeecCC----ccEEEEeCCEEEEEeecC---------------CCCceEEEEECCCCCeEEEeCCCc----eEeeEEC
Confidence            55554432    12444444 899987 11               114579999988766666554422    4578999


Q ss_pred             CEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCC-CEEEEeecCCchhhHhhhcchhHHHHHHhccch
Q 018474          202 DFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDG-SFWIGLIKMNQTGVRAIQKCREKWELLDAYPGL  280 (355)
Q Consensus       202 ~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G-~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (355)
                      +.|||++.+...|++.+++|..   .+.+.+.    +....++++| .|+......                        
T Consensus       157 ~~iy~t~~g~~~Iy~~~l~g~~---~~~l~~~----~~~~~~~P~g~~iy~t~~~~------------------------  205 (302)
T 3s25_A          157 RYFYYNNPKNGQLYRYDTASQS---EALFYDC----NCYKPVVLDDTNVYYMDVNR------------------------  205 (302)
T ss_dssp             TEEEEECTTTCCEEEEETTTTE---EEEEECS----CEEEEEEEETTEEEEEEGGG------------------------
T ss_pred             CEEEEEeCCCceEEEEECCCCC---EEEEeCC----CccceeeecCCEEEEEEcCC------------------------
Confidence            9999999878899999987642   2223221    1223344444 455554331                        


Q ss_pred             hhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeCCEEEEe-ecCCCeEEEeeCCCCCCC
Q 018474          281 ISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLA-SLQSNFIGILPLDGPEPQ  351 (355)
Q Consensus       281 ~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~-~~~~~~i~~~~~~~~~~~  351 (355)
                                . ..|.+.+. +|...+.+.+..      ...+...+++||.. ....+.|.++.+++...+
T Consensus       206 ----------~-~~I~~~~l-dG~~~~~Lt~~~------~~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~r~  259 (302)
T 3s25_A          206 ----------D-NAIVHVNI-NNPNPVVLTEAN------IEHYNVYGSLIFYQRGGDNPALCVVKNDGTGFK  259 (302)
T ss_dssp             ----------T-TEEEEECS-SSCCCEECSCSC------EEEEEEETTEEEEEECSSSCEEEEEETTSCCCE
T ss_pred             ----------C-cEEEEEEC-CCCCeEEEeCCC------cceEEECCCEEEEEECCCCcEEEEEECCCCccE
Confidence                      0 35888888 776666664421      12356678888886 445688999999887643

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=98.58  E-value=8.2e-05  Score=66.24  Aligned_cols=232  Identities=10%  Similarity=0.025  Sum_probs=138.8

Q ss_pred             CceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEE-eeccCCCcccCeEECCCCCEEEEeCCCc-EEEEc-CCC---eEEE
Q 018474           54 PEDVSVVVSKGALYTATRDGWVKYFILHNETLVN-WKHIDSQSLLGLTTTKDGGVILCDNEKG-LLKVT-EEG---VEAI  127 (355)
Q Consensus        54 p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~-~~~~~~~p~~gl~~d~~g~L~v~~~~~g-l~~~~-~~g---~~~~  127 (355)
                      -.++.+.+++..+.+++.++.|..+|..+++... +......+. ++++.+++.++++...++ +..++ .++   .+.+
T Consensus        58 v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~  136 (304)
T 2ynn_A           58 VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIR-SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF  136 (304)
T ss_dssp             EEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE-EEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEE
T ss_pred             EEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEE-EEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhh
Confidence            4567788777888889999999999998876543 332334567 899999998766555555 44445 344   3334


Q ss_pred             cCCcCCcccEEEcc-CCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEE-Eeecc-ccccccEEEeC--CCC
Q 018474          128 VPDASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT-VLHEG-FYFANGIALSK--NED  202 (355)
Q Consensus       128 ~~~~~~~~~l~~d~-dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~-~~~~~-~~~pngi~~~~--dg~  202 (355)
                      ......+..++++| ++.+.++.+.                 .+.+..||..+++.. .+..+ ....+.+++++  +++
T Consensus       137 ~~h~~~v~~v~~~p~~~~~l~sgs~-----------------D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  199 (304)
T 2ynn_A          137 EGHEHFVMCVAFNPKDPSTFASGCL-----------------DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKP  199 (304)
T ss_dssp             CCCCSCEEEEEECTTCTTEEEEEET-----------------TSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCC
T ss_pred             cccCCcEEEEEECCCCCCEEEEEeC-----------------CCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCC
Confidence            44446788999998 5666665433                 456777886544321 11111 12234456665  666


Q ss_pred             EEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhh
Q 018474          203 FVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLIS  282 (355)
Q Consensus       203 ~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (355)
                       ++++....+.|..|+++...  ....+. ........+.+.+++.+.++....                          
T Consensus       200 -~l~s~s~D~~i~iWd~~~~~--~~~~~~-~h~~~v~~~~~~p~~~~l~s~s~D--------------------------  249 (304)
T 2ynn_A          200 -YMITASDDLTIKIWDYQTKS--CVATLE-GHMSNVSFAVFHPTLPIIISGSED--------------------------  249 (304)
T ss_dssp             -EEEEEETTSEEEEEETTTTE--EEEEEE-CCSSCEEEEEECSSSSEEEEEETT--------------------------
T ss_pred             -EEEEEcCCCeEEEEeCCCCc--cceeeC-CCCCCEEEEEECCCCCEEEEEcCC--------------------------
Confidence             44555567889899875421  112221 222223446788888877665442                          


Q ss_pred             cccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEe--CCEEEEeecCCCeEEEeeCCC
Q 018474          283 LLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF--DGNLYLASLQSNFIGILPLDG  347 (355)
Q Consensus       283 ~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~--~g~L~v~~~~~~~i~~~~~~~  347 (355)
                                +.|..+|.++++....+....+    .+..+...  ++..|+.+-..+.+..+.+..
T Consensus       250 ----------g~i~iWd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~asg~~~g~~~~~~~~  302 (304)
T 2ynn_A          250 ----------GTLKIWNSSTYKVEKTLNVGLE----RSWCIATHPTGRKNYIASGFDNGFTVLSLGN  302 (304)
T ss_dssp             ----------SCEEEEETTTCCEEEEECCSSS----SEEEEEECTTCGGGCEEEEETTEEEEEECC-
T ss_pred             ----------CeEEEEECCCCceeeeccCCCc----cEEEEEECCCCCceEEEEecCCceEEEEecc
Confidence                      3477778767787777755333    33344433  334444444577777776654

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=98.58  E-value=0.0001  Score=68.19  Aligned_cols=182  Identities=11%  Similarity=0.014  Sum_probs=111.4

Q ss_pred             CCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccC-------------------CCcccCeEECCCCCEEEEeC
Q 018474           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHID-------------------SQSLLGLTTTKDGGVILCDN  112 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~-------------------~~p~~gl~~d~~g~L~v~~~  112 (355)
                      ..-.++++.+++..|.++. ++.+..++..+++........                   ..+. ++++.++|+++++..
T Consensus        65 ~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~-~v~~s~dg~~l~s~~  142 (393)
T 1erj_A           65 SVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIR-SVCFSPDGKFLATGA  142 (393)
T ss_dssp             SCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEE-EEEECTTSSEEEEEE
T ss_pred             CEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEE-EEEECCCCCEEEEEc
Confidence            3456888986555555544 677888888777654322110                   0145 788999998766554


Q ss_pred             CCc-EEEEc-CCC--eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecc
Q 018474          113 EKG-LLKVT-EEG--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG  188 (355)
Q Consensus       113 ~~g-l~~~~-~~g--~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~  188 (355)
                      .++ +..++ .++  +..+......+.++++.++|...++.+.                 .+.+..||..+++.......
T Consensus       143 ~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~-----------------d~~v~iwd~~~~~~~~~~~~  205 (393)
T 1erj_A          143 EDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG-----------------DRTVRIWDLRTGQCSLTLSI  205 (393)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET-----------------TSEEEEEETTTTEEEEEEEC
T ss_pred             CCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecC-----------------CCcEEEEECCCCeeEEEEEc
Confidence            555 44556 355  4445444467889999999976665433                 56788899888775443333


Q ss_pred             ccccccEEEeC-CCCEEEEEeCCCCeEEEEEeCCCCCcceeEec------ccCCCCcCceEECCCCCEEEEeec
Q 018474          189 FYFANGIALSK-NEDFVVVCESWKFRCRRYWLKGDRAGILDAFI------ENLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       189 ~~~pngi~~~~-dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~------~~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      ......++++| |++.+ ++....+.|..|+++....  ...+.      .........+.++++|++.++...
T Consensus       206 ~~~v~~~~~~~~~~~~l-~~~s~d~~v~iwd~~~~~~--~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~  276 (393)
T 1erj_A          206 EDGVTTVAVSPGDGKYI-AAGSLDRAVRVWDSETGFL--VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL  276 (393)
T ss_dssp             SSCEEEEEECSTTCCEE-EEEETTSCEEEEETTTCCE--EEEEC------CCCSSCEEEEEECTTSSEEEEEET
T ss_pred             CCCcEEEEEECCCCCEE-EEEcCCCcEEEEECCCCcE--EEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC
Confidence            33456788998 77744 4445667888888754321  11111      011122345778889987766554

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=98.58  E-value=8e-05  Score=67.62  Aligned_cols=182  Identities=9%  Similarity=0.020  Sum_probs=110.8

Q ss_pred             CceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEE--ee-c-cCCCcccCeEECCCCCEEEEeCCCc-EEEEc-CCC----
Q 018474           54 PEDVSVVVSKGALYTATRDGWVKYFILHNETLVN--WK-H-IDSQSLLGLTTTKDGGVILCDNEKG-LLKVT-EEG----  123 (355)
Q Consensus        54 p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~--~~-~-~~~~p~~gl~~d~~g~L~v~~~~~g-l~~~~-~~g----  123 (355)
                      -.++++.|++..|.++..++.|..++..+++...  .. . ...... ++++.++|+++++...++ +..++ ..+    
T Consensus        19 v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~-~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~   97 (345)
T 3fm0_A           19 CWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVR-KVAWSPCGNYLASASFDATTCIWKKNQDDFEC   97 (345)
T ss_dssp             EEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEE-EEEECTTSSEEEEEETTSCEEEEEECCC-EEE
T ss_pred             EEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEE-EEEECCCCCEEEEEECCCcEEEEEccCCCeEE
Confidence            3478899777778888899999999987765331  11 1 123466 899999998666554444 43444 233    


Q ss_pred             eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCe-EE---EeeccccccccEEEeC
Q 018474          124 VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE-TT---VLHEGFYFANGIALSK  199 (355)
Q Consensus       124 ~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~-~~---~~~~~~~~pngi~~~~  199 (355)
                      +..+......+++++++|+|++.++.+.                 .+.+..||..+++ ..   .+.........++++|
T Consensus        98 ~~~~~~h~~~v~~v~~sp~~~~l~s~s~-----------------D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p  160 (345)
T 3fm0_A           98 VTTLEGHENEVKSVAWAPSGNLLATCSR-----------------DKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP  160 (345)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEET-----------------TSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS
T ss_pred             EEEccCCCCCceEEEEeCCCCEEEEEEC-----------------CCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC
Confidence            2334333467899999999987776443                 4456667654442 21   2222223346789999


Q ss_pred             CCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474          200 NEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       200 dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      +++.+.. ....+.|..|+.+.........+. ...+....+.++++|++.++...
T Consensus       161 ~~~~l~s-~s~d~~i~~w~~~~~~~~~~~~~~-~h~~~v~~l~~sp~g~~l~s~s~  214 (345)
T 3fm0_A          161 SQELLAS-ASYDDTVKLYREEEDDWVCCATLE-GHESTVWSLAFDPSGQRLASCSD  214 (345)
T ss_dssp             SSSCEEE-EETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECTTSSEEEEEET
T ss_pred             CCCEEEE-EeCCCcEEEEEecCCCEEEEEEec-CCCCceEEEEECCCCCEEEEEeC
Confidence            9985544 445677888887432111111121 22233456788999987776654

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.57  E-value=2.4e-05  Score=78.11  Aligned_cols=179  Identities=12%  Similarity=0.113  Sum_probs=110.7

Q ss_pred             CceEEEeeCCCeEEEEe---------------------------------cCCEEEEEEcCCCeeEEeecc---CCCccc
Q 018474           54 PEDVSVVVSKGALYTAT---------------------------------RDGWVKYFILHNETLVNWKHI---DSQSLL   97 (355)
Q Consensus        54 p~~i~~d~~~g~l~~~~---------------------------------~~g~i~~~~~~~g~~~~~~~~---~~~p~~   97 (355)
                      +.++.+.|++..|+++.                                 .+..|+.+|..+++.......   ...+. 
T Consensus       183 ~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~-  261 (706)
T 2z3z_A          183 EKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLT-  261 (706)
T ss_dssp             CCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEE-
T ss_pred             CceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEe-
Confidence            57899997777777765                                 335788999988876654322   12355 


Q ss_pred             CeEECCCCC-EEEEeCCC-----cEEEEc-CCC--eEEEcCC--c---CCcccEEEcc--CCcEEEEeCCCCCCCccccc
Q 018474           98 GLTTTKDGG-VILCDNEK-----GLLKVT-EEG--VEAIVPD--A---SFTNDVIAAS--DGTLYFTVASTKYTPTDFYK  161 (355)
Q Consensus        98 gl~~d~~g~-L~v~~~~~-----gl~~~~-~~g--~~~~~~~--~---~~~~~l~~d~--dG~ly~~d~~~~~~~~~~~~  161 (355)
                      .+++.++|+ |+++....     .++.++ .+|  .+.+...  .   ..++++++++  ||+++++...          
T Consensus       262 ~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~----------  331 (706)
T 2z3z_A          262 NLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRR----------  331 (706)
T ss_dssp             EEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECT----------
T ss_pred             eEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEcc----------
Confidence            788999997 66644332     467777 355  3333211  1   2246789999  9975554322          


Q ss_pred             cccccCCCCeEEEEeCCCCeEEEeecccccccc-EEEeCCCCEEEEEeCCCC----eEEEEEeCCCCCcceeEecccCCC
Q 018474          162 DMAEGKPYGQLRKYDPKLKETTVLHEGFYFANG-IALSKNEDFVVVCESWKF----RCRRYWLKGDRAGILDAFIENLPG  236 (355)
Q Consensus       162 ~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~png-i~~~~dg~~l~v~~~~~~----~i~~~~~~~~~~~~~~~~~~~~~g  236 (355)
                           .....++.++.+++..+.+..+...... ++++||++.++++....+    .|++++.++..   .+.+. . ..
T Consensus       332 -----~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~---~~~l~-~-~~  401 (706)
T 2z3z_A          332 -----DGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK---TKDLT-P-ES  401 (706)
T ss_dssp             -----TSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC---CEESC-C-SS
T ss_pred             -----CCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC---ceecc-C-CC
Confidence                 1134789999766666655443222233 789999999998877654    78888875432   22221 1 11


Q ss_pred             CcCceEECCCCCEEEEe
Q 018474          237 GPDNINLAPDGSFWIGL  253 (355)
Q Consensus       237 ~p~~i~~d~~G~lwv~~  253 (355)
                      ....+.++++|+.++..
T Consensus       402 ~~~~~~~spdg~~l~~~  418 (706)
T 2z3z_A          402 GMHRTQLSPDGSAIIDI  418 (706)
T ss_dssp             SEEEEEECTTSSEEEEE
T ss_pred             ceEEEEECCCCCEEEEE
Confidence            23456788888765544

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=98.57  E-value=2.7e-05  Score=73.09  Aligned_cols=185  Identities=12%  Similarity=0.093  Sum_probs=114.0

Q ss_pred             CCCCceEEEeeCC-CeEEEEecCCEEEEEEcCC----------Ce-eEEeeccCCCcccCeEECCCCC-EEEEeCCCc-E
Q 018474           51 VNHPEDVSVVVSK-GALYTATRDGWVKYFILHN----------ET-LVNWKHIDSQSLLGLTTTKDGG-VILCDNEKG-L  116 (355)
Q Consensus        51 ~~~p~~i~~d~~~-g~l~~~~~~g~i~~~~~~~----------g~-~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~~g-l  116 (355)
                      ...+.++++.+.+ ..+++++.+|.|..++..+          .+ ...+......+. ++++++++. ++++....| +
T Consensus       128 ~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~~~~~~~~l~s~~~dg~i  206 (430)
T 2xyi_A          128 EGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGY-GLSWNPNLNGYLLSASDDHTI  206 (430)
T ss_dssp             SSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCC-CEEECTTSTTEEEEECTTSCE
T ss_pred             CCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeE-EEEeCCCCCCeEEEEeCCCeE
Confidence            3568899999643 4566677789999999754          11 222222334577 999998876 555544444 5


Q ss_pred             EEEc-CCC-----e----EEEcCCcCCcccEEEcc-CCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCe----
Q 018474          117 LKVT-EEG-----V----EAIVPDASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE----  181 (355)
Q Consensus       117 ~~~~-~~g-----~----~~~~~~~~~~~~l~~d~-dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~----  181 (355)
                      ..++ ..+     .    ..+......++++++++ ++.++++...                 .+.+..||..++.    
T Consensus       207 ~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~-----------------dg~i~i~d~~~~~~~~~  269 (430)
T 2xyi_A          207 CLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVAD-----------------DQKLMIWDTRNNNTSKP  269 (430)
T ss_dssp             EEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEET-----------------TSEEEEEETTCSCSSSC
T ss_pred             EEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeC-----------------CCeEEEEECCCCCCCcc
Confidence            5555 231     1    11222225688899998 5577776543                 5678888886552    


Q ss_pred             EEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCC-EEEEeec
Q 018474          182 TTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGS-FWIGLIK  255 (355)
Q Consensus       182 ~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~~  255 (355)
                      ...+......++.++++|+++.++++....+.|..|+++.... ....+. ...+....+.+.++|. ++++...
T Consensus       270 ~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~-~~~~~~-~h~~~v~~i~~sp~~~~~l~s~~~  342 (430)
T 2xyi_A          270 SHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL-KLHSFE-SHKDEIFQVQWSPHNETILASSGT  342 (430)
T ss_dssp             SEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS-CSEEEE-CCSSCEEEEEECSSCTTEEEEEET
T ss_pred             eeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC-CeEEee-cCCCCEEEEEECCCCCCEEEEEeC
Confidence            2222223345678999999987777777788999999864221 122222 2233345678888885 5555543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.56  E-value=3.8e-06  Score=81.23  Aligned_cols=185  Identities=9%  Similarity=-0.028  Sum_probs=119.0

Q ss_pred             CCCCceEEEe--eCCCeEEEEe------------------cCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEE
Q 018474           51 VNHPEDVSVV--VSKGALYTAT------------------RDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VIL  109 (355)
Q Consensus        51 ~~~p~~i~~d--~~~g~l~~~~------------------~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v  109 (355)
                      ..+|+++++.  |+++.+|+++                  .++.+..+|.++.+...-...+++|. +++++++|+ +|+
T Consensus       133 g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~pd-~~~~spdGk~~~v  211 (595)
T 1fwx_A          133 AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLD-NCDADYEGKWAFS  211 (595)
T ss_dssp             CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSCCC-CEEECSSSSEEEE
T ss_pred             CCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCCcc-ceEECCCCCEEEE
Confidence            4789999984  6799999985                  23567888988776554444455899 999999886 666


Q ss_pred             EeCCC--------------------------------------cEEEEc-CC--C-e-E-EEcCCcCCcccEEEccCC-c
Q 018474          110 CDNEK--------------------------------------GLLKVT-EE--G-V-E-AIVPDASFTNDVIAASDG-T  144 (355)
Q Consensus       110 ~~~~~--------------------------------------gl~~~~-~~--g-~-~-~~~~~~~~~~~l~~d~dG-~  144 (355)
                      +....                                      ++-.+| .+  + . . .+.. ...|.++.++||| .
T Consensus       212 t~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~  290 (595)
T 1fwx_A          212 TSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKH  290 (595)
T ss_dssp             EESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSE
T ss_pred             EecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCE
Confidence            65332                                      234444 22  2 1 1 1211 1689999999999 5


Q ss_pred             EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCe------------EEEeeccccccccEEEeCCCCEEEEEeCCCC
Q 018474          145 LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE------------TTVLHEGFYFANGIALSKNEDFVVVCESWKF  212 (355)
Q Consensus       145 ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~------------~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~  212 (355)
                      +|+++..                 ...+..||.++.+            +.........|.+++|++|| .+|++....+
T Consensus       291 v~V~~~~-----------------s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~lds  352 (595)
T 1fwx_A          291 LCVAGKL-----------------SPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDS  352 (595)
T ss_dssp             EEEECTT-----------------SSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTS-EEEEEETTTT
T ss_pred             EEEeCCC-----------------CCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCC-eEEEEEecCC
Confidence            8887654                 4467777765431            22222334579999999999 7999999999


Q ss_pred             eEEEEEeCC-------CCCcc-eeEeccc-CCC---CcCceEECCCCCEEEEeec
Q 018474          213 RCRRYWLKG-------DRAGI-LDAFIEN-LPG---GPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       213 ~i~~~~~~~-------~~~~~-~~~~~~~-~~g---~p~~i~~d~~G~lwv~~~~  255 (355)
                      .|.+|+++.       .+..+ ...+... .||   .+-++..++||++.++.+.
T Consensus       353 qV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk  407 (595)
T 1fwx_A          353 QVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK  407 (595)
T ss_dssp             EEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred             cEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence            999999854       11111 1111111 111   1134567888987666655

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.56  E-value=3.6e-06  Score=77.38  Aligned_cols=155  Identities=8%  Similarity=-0.085  Sum_probs=96.5

Q ss_pred             eEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCC-cc-cCeEECCCCCEEEEe----------------------
Q 018474           56 DVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQ-SL-LGLTTTKDGGVILCD----------------------  111 (355)
Q Consensus        56 ~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~-p~-~gl~~d~~g~L~v~~----------------------  111 (355)
                      ++++.|++..|+....++.|+.+|..+++...+...... .. .....+++|+++++.                      
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~  164 (388)
T 3pe7_A           85 GGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFT  164 (388)
T ss_dssp             SCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGG
T ss_pred             ceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhcc
Confidence            568887777888888888999999988876654432211 11 012347888877642                      


Q ss_pred             -CCCcEEEEc-CCC-eEEEcCCcCCcccEEEcc-CCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee
Q 018474          112 -NEKGLLKVT-EEG-VEAIVPDASFTNDVIAAS-DGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH  186 (355)
Q Consensus       112 -~~~gl~~~~-~~g-~~~~~~~~~~~~~l~~d~-dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~  186 (355)
                       ....|+.++ .+| .+.+......+.++.++| ||+ |.++.....            ......|+.+|.++++.+.+.
T Consensus       165 ~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~------------~~~~~~l~~~d~~~~~~~~l~  232 (388)
T 3pe7_A          165 KPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPH------------DLVDARMWLINEDGTNMRKVK  232 (388)
T ss_dssp             CCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCT------------TTSSCSEEEEETTSCCCEESC
T ss_pred             CCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCC------------CCCcceEEEEeCCCCceEEee
Confidence             113588888 466 665554435678899999 884 544432200            011347899998777666554


Q ss_pred             ccc--cccccEEEeCCCCEEEE-EeCCCC---eEEEEEeCCC
Q 018474          187 EGF--YFANGIALSKNEDFVVV-CESWKF---RCRRYWLKGD  222 (355)
Q Consensus       187 ~~~--~~pngi~~~~dg~~l~v-~~~~~~---~i~~~~~~~~  222 (355)
                      ...  ......+++|||+.+++ +.....   .|+++++++.
T Consensus       233 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g  274 (388)
T 3pe7_A          233 THAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETL  274 (388)
T ss_dssp             CCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTC
T ss_pred             eCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCC
Confidence            332  12335689999996644 443222   3888988654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.56  E-value=1.5e-05  Score=78.90  Aligned_cols=179  Identities=11%  Similarity=-0.007  Sum_probs=104.5

Q ss_pred             eCCCe-EEEEe-cCCEEEEEEcC--C-CeeEEeecc-----CCCcccCeEECCCCC-EEEEeCC----------CcEEEE
Q 018474           61 VSKGA-LYTAT-RDGWVKYFILH--N-ETLVNWKHI-----DSQSLLGLTTTKDGG-VILCDNE----------KGLLKV  119 (355)
Q Consensus        61 ~~~g~-l~~~~-~~g~i~~~~~~--~-g~~~~~~~~-----~~~p~~gl~~d~~g~-L~v~~~~----------~gl~~~  119 (355)
                      |+++. ++.+. .+..|+.++..  + ++...+...     ..... ++++.+||+ |+++...          ..|+.+
T Consensus        88 PDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~-~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~  166 (662)
T 3azo_A           88 PAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWA-DPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAV  166 (662)
T ss_dssp             SSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEE-EEEEETTTTEEEEEEEEECSSSTTCEEEEEEEE
T ss_pred             cCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCcccc-CcEECCCCCEEEEEEecccCCCCCCceeEEEEE
Confidence            55666 55544 36789999875  3 665555431     23455 788899997 4444322          247888


Q ss_pred             c-CC------C-eEEEc-CCcCCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCC-CC---eEEEe
Q 018474          120 T-EE------G-VEAIV-PDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPK-LK---ETTVL  185 (355)
Q Consensus       120 ~-~~------g-~~~~~-~~~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~-~~---~~~~~  185 (355)
                      + .+      + .+.+. .......+++++|||+ |+++.....       ...+   ....|+.+|.+ ++   +.+.+
T Consensus       167 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~-------~~~~---~~~~i~~~d~~~~g~~~~~~~l  236 (662)
T 3azo_A          167 PLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHP-------RMPW---EGTELKTARVTEDGRFADTRTL  236 (662)
T ss_dssp             ETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTT-------CCTT---TCEEEEEEEECTTSCEEEEEEE
T ss_pred             ECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCC-------CCCC---CCcEEEEEEECCCCcccccEEe
Confidence            8 46      7 66665 4445677889999995 655542210       0000   12468888887 46   55555


Q ss_pred             ecc-ccccccEEEeCCCCEEEEEeCCCC--eEEEEEeCCCCCcceeEecccCCC------C--cCceEECCCCCEEEEee
Q 018474          186 HEG-FYFANGIALSKNEDFVVVCESWKF--RCRRYWLKGDRAGILDAFIENLPG------G--PDNINLAPDGSFWIGLI  254 (355)
Q Consensus       186 ~~~-~~~pngi~~~~dg~~l~v~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~g------~--p~~i~~d~~G~lwv~~~  254 (355)
                      ..+ ......++++|||+ +|++....+  .|+++++++..   .+.+......      .  ...+.+.++|++++...
T Consensus       237 ~~~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~---~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~  312 (662)
T 3azo_A          237 LGGPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPATGA---ATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHG  312 (662)
T ss_dssp             EEETTBCEEEEEECTTSC-EEEEECTTSSCEEEEECTTTCC---EEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEB
T ss_pred             CCCCCceEcceEECCCCe-EEEEECCCCCeEEEEEECCCCc---eeecccccccccCccccccCceEeEeCCCEEEEEEE
Confidence            443 34456789999999 555554444  78888864432   2222111100      0  23466767788776654

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=98.56  E-value=5.2e-05  Score=69.61  Aligned_cols=245  Identities=12%  Similarity=0.012  Sum_probs=139.4

Q ss_pred             ecCCCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCe-------eEEeeccCCCcccCeEECCC----C---CEEEE-
Q 018474           46 LGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNET-------LVNWKHIDSQSLLGLTTTKD----G---GVILC-  110 (355)
Q Consensus        46 ~~~~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~-------~~~~~~~~~~p~~gl~~d~~----g---~L~v~-  110 (355)
                      ...+.-..-.++++++  +.|++++.+|.|..++..+++       ...+......+. .+++.++    |   +++++ 
T Consensus        11 ~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~g~~~~~l~s~   87 (397)
T 1sq9_A           11 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLH-HVDVLQAIERDAFELCLVATT   87 (397)
T ss_dssp             ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEE-EEEEEEEEETTTEEEEEEEEE
T ss_pred             hhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEE-EEEEecccccCCccccEEEEE
Confidence            3344445667888883  788889999999999987765       444433334466 8888887    7   65554 


Q ss_pred             eCCCcEEEEc-CCC-------eEEEcCC-----cCCcccEEEc----cCCcE-EEEeCCCCCCCccccccccccCCCCeE
Q 018474          111 DNEKGLLKVT-EEG-------VEAIVPD-----ASFTNDVIAA----SDGTL-YFTVASTKYTPTDFYKDMAEGKPYGQL  172 (355)
Q Consensus       111 ~~~~gl~~~~-~~g-------~~~~~~~-----~~~~~~l~~d----~dG~l-y~~d~~~~~~~~~~~~~~~~~~~~g~l  172 (355)
                      ...+.+..++ .++       ...+...     ...+.++++.    ++|.. +++.+.                 .+.+
T Consensus        88 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~-----------------dg~i  150 (397)
T 1sq9_A           88 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDV-----------------KGTT  150 (397)
T ss_dssp             ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEET-----------------TSCE
T ss_pred             cCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeC-----------------CCcE
Confidence            4334455555 222       2223322     2567889999    88876 554322                 3456


Q ss_pred             EEEeCCC------C-eEE-----Eee-------ccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEeccc
Q 018474          173 RKYDPKL------K-ETT-----VLH-------EGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIEN  233 (355)
Q Consensus       173 ~~~dp~~------~-~~~-----~~~-------~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~  233 (355)
                      ..||..+      + ...     .+.       ........+++++++  ++++....+.|..|+++...  ....+. .
T Consensus       151 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~--~~~~~~-~  225 (397)
T 1sq9_A          151 YIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLR--PLYNFE-S  225 (397)
T ss_dssp             EEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTE--EEEEEE-C
T ss_pred             EEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCc--eeEEEe-c
Confidence            6666544      2 111     221       123346789999999  44555567889999985421  122222 2


Q ss_pred             ---C---CCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEE
Q 018474          234 ---L---PGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIR  307 (355)
Q Consensus       234 ---~---~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~  307 (355)
                         .   ......+.++++|+++++....                                 ...+.|..+|..+++.+.
T Consensus       226 ~~~h~~~~~~i~~i~~~~~~~~l~~~~~d---------------------------------~~~g~i~i~d~~~~~~~~  272 (397)
T 1sq9_A          226 QHSMINNSNSIRSVKFSPQGSLLAIAHDS---------------------------------NSFGCITLYETEFGERIG  272 (397)
T ss_dssp             CC---CCCCCEEEEEECSSTTEEEEEEEE---------------------------------TTEEEEEEEETTTCCEEE
T ss_pred             cccccccCCccceEEECCCCCEEEEEecC---------------------------------CCCceEEEEECCCCcccc
Confidence               2   3334567888889876655431                                 111467778865777777


Q ss_pred             EEECCCC---------CcccceeEEEEe-CCEEEEeecCCCeEEEeeCCCC
Q 018474          308 DFNDPDA---------TYISFVTSAAEF-DGNLYLASLQSNFIGILPLDGP  348 (355)
Q Consensus       308 ~~~~~~g---------~~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~~~~~  348 (355)
                      .+..+.-         .....+..+... ++++++.....+.|..+++.+.
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  323 (397)
T 1sq9_A          273 SLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK  323 (397)
T ss_dssp             EECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred             eeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            7755100         012245555554 3444444344777888877653

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=98.56  E-value=9.4e-05  Score=73.85  Aligned_cols=184  Identities=10%  Similarity=0.080  Sum_probs=114.7

Q ss_pred             CCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEE-eeccCCCcccCeEECCCCCEEEEeCCCcEE-EEcCCC--e
Q 018474           49 GCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVN-WKHIDSQSLLGLTTTKDGGVILCDNEKGLL-KVTEEG--V  124 (355)
Q Consensus        49 ~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~-~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~-~~~~~g--~  124 (355)
                      +.-..-.++++.+++..|.+++.+|.|..+|..+++... +......+. ++++.++|+.+++...++.+ .++..+  .
T Consensus       428 ~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~-~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~  506 (694)
T 3dm0_A          428 GHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVL-SVAFSLDNRQIVSASRDRTIKLWNTLGECK  506 (694)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE-EEEECTTSSCEEEEETTSCEEEECTTSCEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEE-EEEEeCCCCEEEEEeCCCEEEEEECCCCcc
Confidence            334456688888777778888899999999998886543 322334567 89999998766554455544 445433  3


Q ss_pred             EEEcCC----cCCcccEEEccCC--cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecc-ccccccEEE
Q 018474          125 EAIVPD----ASFTNDVIAASDG--TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG-FYFANGIAL  197 (355)
Q Consensus       125 ~~~~~~----~~~~~~l~~d~dG--~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~-~~~pngi~~  197 (355)
                      ..+...    ...+.++++++++  .+.++.+.                 .+.+..||..+++......+ ......+++
T Consensus       507 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-----------------d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~  569 (694)
T 3dm0_A          507 YTISEGGEGHRDWVSCVRFSPNTLQPTIVSASW-----------------DKTVKVWNLSNCKLRSTLAGHTGYVSTVAV  569 (694)
T ss_dssp             EEECSSTTSCSSCEEEEEECSCSSSCEEEEEET-----------------TSCEEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred             eeeccCCCCCCCcEEEEEEeCCCCcceEEEEeC-----------------CCeEEEEECCCCcEEEEEcCCCCCEEEEEE
Confidence            333221    1557888888876  34444322                 45788888877765433332 234567999


Q ss_pred             eCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474          198 SKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       198 ~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      +||++.+ ++....+.|..|++...+  ....+  ........+.++++|.+.++...
T Consensus       570 spdg~~l-~sg~~Dg~i~iwd~~~~~--~~~~~--~~~~~v~~~~~sp~~~~l~~~~~  622 (694)
T 3dm0_A          570 SPDGSLC-ASGGKDGVVLLWDLAEGK--KLYSL--EANSVIHALCFSPNRYWLCAATE  622 (694)
T ss_dssp             CTTSSEE-EEEETTSBCEEEETTTTE--EEECC--BCSSCEEEEEECSSSSEEEEEET
T ss_pred             eCCCCEE-EEEeCCCeEEEEECCCCc--eEEEe--cCCCcEEEEEEcCCCcEEEEEcC
Confidence            9999954 455567788889875321  11111  11223455778888877766544

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=98.56  E-value=0.00032  Score=63.93  Aligned_cols=186  Identities=11%  Similarity=0.089  Sum_probs=116.2

Q ss_pred             CCCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEe-eccCCCcccCeEECCCCCEEEEeCCCcEEEEc--C-C-
Q 018474           48 EGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNW-KHIDSQSLLGLTTTKDGGVILCDNEKGLLKVT--E-E-  122 (355)
Q Consensus        48 ~~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~-~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~--~-~-  122 (355)
                      .|.-..-.++++.+++..|..++.||.|..+|..+++.... ........ .+++.++|.++++...++.+++.  . . 
T Consensus        61 ~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~-~~~~sp~g~~lasg~~d~~i~v~~~~~~~  139 (354)
T 2pbi_B           61 KGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVM-ACAYAPSGCAIACGGLDNKCSVYPLTFDK  139 (354)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCC-EEEECTTSSEEEEESTTSEEEEEECCCCT
T ss_pred             cCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEE-EEEECCCCCEEEEeeCCCCEEEEEEeccc
Confidence            35555677899997777888899999999999877654433 22234566 88999999987776665544432  1 1 


Q ss_pred             --C----eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecc-ccccccE
Q 018474          123 --G----VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG-FYFANGI  195 (355)
Q Consensus       123 --g----~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~-~~~pngi  195 (355)
                        +    ...+......+..+.+.+++...++.+.                 .+.+..||.++++......+ ......+
T Consensus       140 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~-----------------D~~v~lwd~~~~~~~~~~~~h~~~v~~~  202 (354)
T 2pbi_B          140 NENMAAKKKSVAMHTNYLSACSFTNSDMQILTASG-----------------DGTCALWDVESGQLLQSFHGHGADVLCL  202 (354)
T ss_dssp             TCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEET-----------------TSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             cccccccceeeeccCCcEEEEEEeCCCCEEEEEeC-----------------CCcEEEEeCCCCeEEEEEcCCCCCeEEE
Confidence              1    2222222356778888888865555433                 56788899887765433222 2233456


Q ss_pred             EEeC--CCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474          196 ALSK--NEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       196 ~~~~--dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      ++++  +++. +++....+.|..|+++...  ....+. ........+.+.++|++.++...
T Consensus       203 ~~~~~~~g~~-l~sgs~Dg~v~~wd~~~~~--~~~~~~-~h~~~v~~v~~~p~~~~l~s~s~  260 (354)
T 2pbi_B          203 DLAPSETGNT-FVSGGCDKKAMVWDMRSGQ--CVQAFE-THESDVNSVRYYPSGDAFASGSD  260 (354)
T ss_dssp             EECCCSSCCE-EEEEETTSCEEEEETTTCC--EEEEEC-CCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEeCCCCCE-EEEEeCCCeEEEEECCCCc--EEEEec-CCCCCeEEEEEeCCCCEEEEEeC
Confidence            6766  4564 4555567789999985432  122222 22333456778888987766654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=98.55  E-value=2.9e-05  Score=78.59  Aligned_cols=182  Identities=8%  Similarity=0.032  Sum_probs=115.3

Q ss_pred             CCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEE-eeccCCCcccCeEECCCCCEEEEeCCCc-EEEEc-CCC---eE
Q 018474           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVN-WKHIDSQSLLGLTTTKDGGVILCDNEKG-LLKVT-EEG---VE  125 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~-~~~~~~~p~~gl~~d~~g~L~v~~~~~g-l~~~~-~~g---~~  125 (355)
                      ....++++.+++..|.+++.+|.|..++..+++... +......+. .+++.++|..+++...+| +..++ .++   ..
T Consensus        56 ~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~  134 (814)
T 3mkq_A           56 TPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIR-SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQ  134 (814)
T ss_dssp             SCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE-EEEECSSSSEEEEEETTSEEEEEEGGGTSEEEE
T ss_pred             CcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEE-EEEEeCCCCEEEEEcCCCEEEEEECCCCceEEE
Confidence            456789999878888899999999999988776543 332334567 899999997554433444 55555 333   34


Q ss_pred             EEcCCcCCcccEEEcc-CCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEE-eecc-ccccccEEEeC--C
Q 018474          126 AIVPDASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV-LHEG-FYFANGIALSK--N  200 (355)
Q Consensus       126 ~~~~~~~~~~~l~~d~-dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~-~~~~-~~~pngi~~~~--d  200 (355)
                      .+......+.+++++| +|++.++.+.                 .+.+..||..+++... +... ....+.++++|  +
T Consensus       135 ~~~~~~~~v~~~~~~p~~~~~l~~~~~-----------------dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  197 (814)
T 3mkq_A          135 TFEGHEHFVMCVAFNPKDPSTFASGCL-----------------DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPD  197 (814)
T ss_dssp             EEECCSSCEEEEEEETTEEEEEEEEET-----------------TSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTT
T ss_pred             EEcCCCCcEEEEEEEcCCCCEEEEEeC-----------------CCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCC
Confidence            4444336688899998 7766655332                 4678888876554322 2222 24467789998  8


Q ss_pred             CCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474          201 EDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       201 g~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      ++.++.+ ...+.|..|++....  ....+. ...+....+.+.++|++.++...
T Consensus       198 ~~~l~~~-~~dg~i~~~d~~~~~--~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~  248 (814)
T 3mkq_A          198 KPYMITA-SDDLTIKIWDYQTKS--CVATLE-GHMSNVSFAVFHPTLPIIISGSE  248 (814)
T ss_dssp             CCEEEEE-CTTSEEEEEETTTTE--EEEEEE-CCSSCEEEEEECSSSSEEEEEET
T ss_pred             CCEEEEE-eCCCEEEEEECCCCc--EEEEEc-CCCCCEEEEEEcCCCCEEEEEeC
Confidence            8855554 566789999875422  122221 22233455778888886665543

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=98.55  E-value=0.00049  Score=63.05  Aligned_cols=238  Identities=13%  Similarity=0.138  Sum_probs=136.9

Q ss_pred             CCCceEEEeeCCCeEEEEe-----------cCCEEEEE--EcCCCeeEEeecc--------CCCcccCeEECCCCCE-EE
Q 018474           52 NHPEDVSVVVSKGALYTAT-----------RDGWVKYF--ILHNETLVNWKHI--------DSQSLLGLTTTKDGGV-IL  109 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~-----------~~g~i~~~--~~~~g~~~~~~~~--------~~~p~~gl~~d~~g~L-~v  109 (355)
                      ..+.++..+  ++.++++.           .++.+..+  +..+++.......        ..... .+++.+||++ .+
T Consensus        74 ~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~fSpDg~~la~  150 (365)
T 4h5i_A           74 DSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTK-LVYISREGTVAAI  150 (365)
T ss_dssp             CCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEE-EEEECTTSSCEEE
T ss_pred             CceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEE-EEEEcCCCCEEEE
Confidence            456677665  55666654           23444444  4434444332211        11245 6889999985 45


Q ss_pred             EeCC-CcEEEE-c-CCC--eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEE
Q 018474          110 CDNE-KGLLKV-T-EEG--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV  184 (355)
Q Consensus       110 ~~~~-~gl~~~-~-~~g--~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~  184 (355)
                      +... .+.+++ + +++  +..+.. ...+.+++++|||++.++.+.                  +.+.+++..+++...
T Consensus       151 as~~~d~~i~iwd~~~~~~~~~~~~-~~~V~~v~fspdg~~l~s~s~------------------~~~~~~~~~~~~~~~  211 (365)
T 4h5i_A          151 ASSKVPAIMRIIDPSDLTEKFEIET-RGEVKDLHFSTDGKVVAYITG------------------SSLEVISTVTGSCIA  211 (365)
T ss_dssp             EESCSSCEEEEEETTTTEEEEEEEC-SSCCCEEEECTTSSEEEEECS------------------SCEEEEETTTCCEEE
T ss_pred             EECCCCCEEEEeECCCCcEEEEeCC-CCceEEEEEccCCceEEeccc------------------eeEEEEEeccCccee
Confidence            6543 465555 4 355  333332 256899999999987766432                  245666655554332


Q ss_pred             eec---cccccccEEEeCCCCEEEEEeCCCC---eEEEEEeCCCCCcce--eEecccCCCCcCceEECCCCCEEEEeecC
Q 018474          185 LHE---GFYFANGIALSKNEDFVVVCESWKF---RCRRYWLKGDRAGIL--DAFIENLPGGPDNINLAPDGSFWIGLIKM  256 (355)
Q Consensus       185 ~~~---~~~~pngi~~~~dg~~l~v~~~~~~---~i~~~~~~~~~~~~~--~~~~~~~~g~p~~i~~d~~G~lwv~~~~~  256 (355)
                      ...   .......++++||++.+..+.....   .++.+++........  ..+. ........++++++|++.++....
T Consensus       212 ~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~V~~~~~Spdg~~lasgs~D  290 (365)
T 4h5i_A          212 RKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVT-NRFKGITSMDVDMKGELAVLASND  290 (365)
T ss_dssp             EECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEE-SSCSCEEEEEECTTSCEEEEEETT
T ss_pred             eeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeec-CCCCCeEeEEECCCCCceEEEcCC
Confidence            211   1223467899999986666543322   455666533211111  1111 222223457789999877665432


Q ss_pred             CchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEE-CCCCCcccceeEEEEe-CCEEEEee
Q 018474          257 NQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFN-DPDATYISFVTSAAEF-DGNLYLAS  334 (355)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~-~~~g~~~~~~~~~~~~-~g~L~v~~  334 (355)
                                                          +.|..+|.++++.+..+. .+.+    .++.+.+. +|++.++.
T Consensus       291 ------------------------------------~~V~iwd~~~~~~~~~~~~gH~~----~V~~v~fSpdg~~laS~  330 (365)
T 4h5i_A          291 ------------------------------------NSIALVKLKDLSMSKIFKQAHSF----AITEVTISPDSTYVASV  330 (365)
T ss_dssp             ------------------------------------SCEEEEETTTTEEEEEETTSSSS----CEEEEEECTTSCEEEEE
T ss_pred             ------------------------------------CEEEEEECCCCcEEEEecCcccC----CEEEEEECCCCCEEEEE
Confidence                                                347778876788777663 3333    57778776 47777777


Q ss_pred             cCCCeEEEeeCCCCCCCc
Q 018474          335 LQSNFIGILPLDGPEPQL  352 (355)
Q Consensus       335 ~~~~~i~~~~~~~~~~~~  352 (355)
                      ...+.|.+.+++..-++.
T Consensus       331 S~D~tvrvw~ip~~~~~~  348 (365)
T 4h5i_A          331 SAANTIHIIKLPLNYANY  348 (365)
T ss_dssp             ETTSEEEEEECCTTTTC-
T ss_pred             eCCCeEEEEEcCCCCcCc
Confidence            778999999997655443

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=98.54  E-value=0.00015  Score=65.63  Aligned_cols=183  Identities=10%  Similarity=0.047  Sum_probs=109.3

Q ss_pred             CCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEE-eeccCCCcccCeEECCCCCEEEEeCCCc-EEEEcCCC--e
Q 018474           49 GCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVN-WKHIDSQSLLGLTTTKDGGVILCDNEKG-LLKVTEEG--V  124 (355)
Q Consensus        49 ~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~-~~~~~~~p~~gl~~d~~g~L~v~~~~~g-l~~~~~~g--~  124 (355)
                      +.-..-.++++.+++..+..++.++.|..+|..+++... +......+. ++++.++|+.+++...++ +..++..+  .
T Consensus        74 ~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~-~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~  152 (343)
T 2xzm_R           74 GHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVY-SVAFSPDNRQILSAGAEREIKLWNILGECK  152 (343)
T ss_dssp             CCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEE-EEEECSSTTEEEEEETTSCEEEEESSSCEE
T ss_pred             cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEE-EEEECCCCCEEEEEcCCCEEEEEeccCCce
Confidence            333445678888667777888899999999998876543 332334567 899999998666544444 44555333  2


Q ss_pred             EEEcC---CcCCcccEEEccCC----------cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccc
Q 018474          125 EAIVP---DASFTNDVIAASDG----------TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYF  191 (355)
Q Consensus       125 ~~~~~---~~~~~~~l~~d~dG----------~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~  191 (355)
                      .....   ....+..+.+++++          .++++                 +...+.+..||........+......
T Consensus       153 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s-----------------~~~d~~i~iwd~~~~~~~~~~~h~~~  215 (343)
T 2xzm_R          153 FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFAS-----------------VGWDGRLKVWNTNFQIRYTFKAHESN  215 (343)
T ss_dssp             EECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEE-----------------EETTSEEEEEETTTEEEEEEECCSSC
T ss_pred             eeeecccCCCceeeeeeeccccccccccCCCCCEEEE-----------------EcCCCEEEEEcCCCceeEEEcCcccc
Confidence            22221   11456777777765          23332                 22356788888543333333322334


Q ss_pred             cccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEe
Q 018474          192 ANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGL  253 (355)
Q Consensus       192 pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~  253 (355)
                      .+.++++||++.+. +....+.|..|++..... ....+.  .......++++++|.+..+.
T Consensus       216 v~~~~~s~~g~~l~-sgs~dg~v~iwd~~~~~~-~~~~~~--~~~~v~~v~~sp~~~~la~~  273 (343)
T 2xzm_R          216 VNHLSISPNGKYIA-TGGKDKKLLIWDILNLTY-PQREFD--AGSTINQIAFNPKLQWVAVG  273 (343)
T ss_dssp             EEEEEECTTSSEEE-EEETTCEEEEEESSCCSS-CSEEEE--CSSCEEEEEECSSSCEEEEE
T ss_pred             ceEEEECCCCCEEE-EEcCCCeEEEEECCCCcc-cceeec--CCCcEEEEEECCCCCEEEEE
Confidence            57789999999554 445677898898743211 111121  11224567888888765544

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=98.53  E-value=0.00055  Score=62.91  Aligned_cols=260  Identities=10%  Similarity=0.076  Sum_probs=141.7

Q ss_pred             CCCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeec-cCCCcccCeEECCCCCEEEEeCCCc-EEEEc-CC--
Q 018474           48 EGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH-IDSQSLLGLTTTKDGGVILCDNEKG-LLKVT-EE--  122 (355)
Q Consensus        48 ~~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~-~~~~p~~gl~~d~~g~L~v~~~~~g-l~~~~-~~--  122 (355)
                      .|.-..-.++++.|++..|..++.||.|..+|..+++...... ...... .+++.++|++.++...++ +..++ ..  
T Consensus        63 ~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~-~~~~s~~g~~las~~~d~~v~iw~~~~~~  141 (380)
T 3iz6_a           63 QGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVM-ECAFAPNGQSVACGGLDSACSIFNLSSQA  141 (380)
T ss_dssp             CCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCC-CCEECTTSSEEEECCSSSCCEEEECCCCS
T ss_pred             cccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEE-EEEECCCCCEEEEeeCCCcEEEEECCCCc
Confidence            4555566789999777788889999999999998876543322 234466 888999998776654444 33333 11  


Q ss_pred             ---C----eEEEcCCcCCcccEE-----------EccCCcEEEEeCCCC-----CC----Ccc------------ccccc
Q 018474          123 ---G----VEAIVPDASFTNDVI-----------AASDGTLYFTVASTK-----YT----PTD------------FYKDM  163 (355)
Q Consensus       123 ---g----~~~~~~~~~~~~~l~-----------~d~dG~ly~~d~~~~-----~~----~~~------------~~~~~  163 (355)
                         +    .+.+......+..+.           .+.||.+.+=|....     +.    ..+            ....+
T Consensus       142 ~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l  221 (380)
T 3iz6_a          142 DRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMF  221 (380)
T ss_dssp             SCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEE
T ss_pred             cccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEE
Confidence               1    111111111222222           223444333221100     00    000            00112


Q ss_pred             cccCCCCeEEEEeCCCC--eEEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEeccc------CC
Q 018474          164 AEGKPYGQLRKYDPKLK--ETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIEN------LP  235 (355)
Q Consensus       164 ~~~~~~g~l~~~dp~~~--~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~------~~  235 (355)
                      ..+...+.+..||....  ....+.......+.++++||++. +++....+.|..|++....  ....+...      ..
T Consensus       222 ~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-l~s~s~D~~i~lwd~~~~~--~~~~~~~~~~~~~~~~  298 (380)
T 3iz6_a          222 ISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQR-FGTGSDDGTCRLFDMRTGH--QLQVYNREPDRNDNEL  298 (380)
T ss_dssp             EEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSE-EEEECSSSCEEEEETTTTE--EEEEECCCCSSSCCSS
T ss_pred             EEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCe-EEEEcCCCeEEEEECCCCc--EEEEeccccccccccc
Confidence            23344567788887522  22333322344678999999984 5556667889999975421  11222110      01


Q ss_pred             CCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCC
Q 018474          236 GGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDAT  315 (355)
Q Consensus       236 g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~  315 (355)
                      .....++++++|++.++....                                    +.|..+|...++....+......
T Consensus       299 ~~v~~~~~s~~g~~l~~g~~d------------------------------------g~i~vwd~~~~~~~~~~~~~~~~  342 (380)
T 3iz6_a          299 PIVTSVAFSISGRLLFAGYSN------------------------------------GDCYVWDTLLAEMVLNLGTLQNS  342 (380)
T ss_dssp             CSCSEEEECSSSSEEEEECTT------------------------------------SCEEEEETTTCCEEEEECCSCSS
T ss_pred             CceEEEEECCCCCEEEEEECC------------------------------------CCEEEEECCCCceEEEEecccCC
Confidence            123557889999877765432                                    45777887567776666321111


Q ss_pred             cccceeEEEEe-CCEEEEeecCCCeEEEeeCCC
Q 018474          316 YISFVTSAAEF-DGNLYLASLQSNFIGILPLDG  347 (355)
Q Consensus       316 ~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~~~~  347 (355)
                      ....++.+... +|++.++......|...++.+
T Consensus       343 h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~  375 (380)
T 3iz6_a          343 HEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG  375 (380)
T ss_dssp             CCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred             CCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence            13346666654 355555555577788777764

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=98.52  E-value=1.2e-05  Score=73.32  Aligned_cols=140  Identities=13%  Similarity=0.051  Sum_probs=85.3

Q ss_pred             cccCeEECCCCCEEEEeCCCcEEEEc-CCC--eEEEc----CCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccC
Q 018474           95 SLLGLTTTKDGGVILCDNEKGLLKVT-EEG--VEAIV----PDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGK  167 (355)
Q Consensus        95 p~~gl~~d~~g~L~v~~~~~gl~~~~-~~g--~~~~~----~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~  167 (355)
                      .. .+++.++++|..+...+.+..++ .++  .....    .....+++++++++|+..++.+.                
T Consensus        85 v~-~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~----------------  147 (344)
T 4gqb_B           85 VA-DLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSK----------------  147 (344)
T ss_dssp             EE-EEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEET----------------
T ss_pred             EE-EEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeC----------------
Confidence            55 78888888888777554344445 344  32221    22257899999999987776433                


Q ss_pred             CCCeEEEEeCCCCeEEEeecc-ccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCC-CCcCceEECC
Q 018474          168 PYGQLRKYDPKLKETTVLHEG-FYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLP-GGPDNINLAP  245 (355)
Q Consensus       168 ~~g~l~~~dp~~~~~~~~~~~-~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-g~p~~i~~d~  245 (355)
                       .+.+..||.++++......+ ....+.+++++++..++++....+.|..|+++..+.  ...+..... .....+.+.+
T Consensus       148 -d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~p  224 (344)
T 4gqb_B          148 -DICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKP--ASQIGCSAPGYLPTSLAWHP  224 (344)
T ss_dssp             -TSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSC--EEECC----CCCEEEEEECS
T ss_pred             -CCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccce--eeeeecceeeccceeeeecC
Confidence             45788899888865443333 233467899999976777777778899999854321  111111111 1234466666


Q ss_pred             C-CCEEEEee
Q 018474          246 D-GSFWIGLI  254 (355)
Q Consensus       246 ~-G~lwv~~~  254 (355)
                      + ++++++..
T Consensus       225 ~~~~~l~sg~  234 (344)
T 4gqb_B          225 QQSEVFVFGD  234 (344)
T ss_dssp             SCTTEEEEEE
T ss_pred             CCCcceEEec
Confidence            4 45665443

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=98.50  E-value=0.00013  Score=66.66  Aligned_cols=230  Identities=13%  Similarity=0.067  Sum_probs=135.1

Q ss_pred             CCCceEEEeeCCCeEEEEecCCEEEEEEcCCCe-------eEEeeccCCCcccCeEECCCCCEEEEeCCCc-EEEEc-CC
Q 018474           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNET-------LVNWKHIDSQSLLGLTTTKDGGVILCDNEKG-LLKVT-EE  122 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~-------~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~g-l~~~~-~~  122 (355)
                      ....++++.|++..+.++..++.+..++...+.       ...+....+... .+.+.+++..+++...++ +..++ .+
T Consensus       107 ~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~t~s~D~~v~lwd~~~  185 (354)
T 2pbi_B          107 TWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLS-ACSFTNSDMQILTASGDGTCALWDVES  185 (354)
T ss_dssp             SCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEE-EEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred             CCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEE-EEEEeCCCCEEEEEeCCCcEEEEeCCC
Confidence            345678888777777788889988888764321       122222233456 788888886555444445 44455 45


Q ss_pred             C--eEEEcCCcCCcccEEEcc--CCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeec-cccccccEEE
Q 018474          123 G--VEAIVPDASFTNDVIAAS--DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE-GFYFANGIAL  197 (355)
Q Consensus       123 g--~~~~~~~~~~~~~l~~d~--dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~-~~~~pngi~~  197 (355)
                      +  ++.+......+..+.+.+  +|++.++.+.                 .+.+..||..+++...... .....+.+++
T Consensus       186 ~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~-----------------Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~  248 (354)
T 2pbi_B          186 GQLLQSFHGHGADVLCLDLAPSETGNTFVSGGC-----------------DKKAMVWDMRSGQCVQAFETHESDVNSVRY  248 (354)
T ss_dssp             CCEEEEEECCSSCEEEEEECCCSSCCEEEEEET-----------------TSCEEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred             CeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeC-----------------CCeEEEEECCCCcEEEEecCCCCCeEEEEE
Confidence            5  555544435566777765  5666655332                 5678899987776543332 2334578999


Q ss_pred             eCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEeccc-CCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHh
Q 018474          198 SKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIEN-LPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDA  276 (355)
Q Consensus       198 ~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~  276 (355)
                      +|+++.++ +....+.|..|++....  ....+... .......+.++++|++.++....                    
T Consensus       249 ~p~~~~l~-s~s~D~~v~lwd~~~~~--~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d--------------------  305 (354)
T 2pbi_B          249 YPSGDAFA-SGSDDATCRLYDLRADR--EVAIYSKESIIFGASSVDFSLSGRLLFAGYND--------------------  305 (354)
T ss_dssp             CTTSSEEE-EEETTSCEEEEETTTTE--EEEEECCTTCCSCEEEEEECTTSSEEEEEETT--------------------
T ss_pred             eCCCCEEE-EEeCCCeEEEEECCCCc--EEEEEcCCCcccceeEEEEeCCCCEEEEEECC--------------------
Confidence            99998554 44567788889875421  12222111 11112456788899877665442                    


Q ss_pred             ccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeC-CEEEEeecCCCeEEE
Q 018474          277 YPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFD-GNLYLASLQSNFIGI  342 (355)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~-g~L~v~~~~~~~i~~  342 (355)
                                      +.|..+|..+++.+..+..+.+    .++.+.... |++.++......|..
T Consensus       306 ----------------~~i~vwd~~~~~~~~~l~~h~~----~v~~l~~spdg~~l~sgs~D~~v~v  352 (354)
T 2pbi_B          306 ----------------YTINVWDVLKGSRVSILFGHEN----RVSTLRVSPDGTAFCSGSWDHTLRV  352 (354)
T ss_dssp             ----------------SCEEEEETTTCSEEEEECCCSS----CEEEEEECTTSSCEEEEETTSEEEE
T ss_pred             ----------------CcEEEEECCCCceEEEEECCCC----cEEEEEECCCCCEEEEEcCCCCEEe
Confidence                            3477778657777777755443    455566543 444443333444443

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=98.50  E-value=1.1e-05  Score=80.85  Aligned_cols=135  Identities=10%  Similarity=0.037  Sum_probs=86.9

Q ss_pred             CCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCC----CcccCeEECCCCCEE-EEeCC---------CcEEE
Q 018474           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDS----QSLLGLTTTKDGGVI-LCDNE---------KGLLK  118 (355)
Q Consensus        53 ~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~----~p~~gl~~d~~g~L~-v~~~~---------~gl~~  118 (355)
                      .+.++++.+++..++ .+.+|.|+.+|..+++.........    .+. .+++.+||+.. ++...         ..++.
T Consensus        18 ~~~~~~~spdg~~~~-~~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~-~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~   95 (723)
T 1xfd_A           18 HDPEAKWISDTEFIY-REQKGTVRLWNVETNTSTVLIEGKKIESLRAI-RYEISPDREYALFSYNVEPIYQHSYTGYYVL   95 (723)
T ss_dssp             CCCCCCBSSSSCBCC-CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCS-EEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred             cccccEEcCCCcEEE-EeCCCCEEEEECCCCcEEEEeccccccccccc-eEEECCCCCEEEEEecCccceeecceeeEEE
Confidence            467788885555444 3568899999998887665543322    266 78999999844 44321         34667


Q ss_pred             Ec-CCC-eEEEcCCc---CCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecccc--
Q 018474          119 VT-EEG-VEAIVPDA---SFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFY--  190 (355)
Q Consensus       119 ~~-~~g-~~~~~~~~---~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~--  190 (355)
                      ++ .++ .+.+....   ..+..++++|||+ |.++.                   .+.++.+|..+++...+.....  
T Consensus        96 ~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~-------------------~~~i~~~~~~~g~~~~~~~~~~~~  156 (723)
T 1xfd_A           96 SKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-------------------ENNIYYCAHVGKQAIRVVSTGKEG  156 (723)
T ss_dssp             EESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-------------------TTEEEEESSSSSCCEEEECCCBTT
T ss_pred             EECCCCceEeccCCccccccccccEECCCCCEEEEEE-------------------CCeEEEEECCCCceEEEecCCCCC
Confidence            77 455 55444322   2377889999994 55542                   1368888887776554433211  


Q ss_pred             -----------------ccccEEEeCCCCEEEEEe
Q 018474          191 -----------------FANGIALSKNEDFVVVCE  208 (355)
Q Consensus       191 -----------------~pngi~~~~dg~~l~v~~  208 (355)
                                       ...+++++|||+.|+++.
T Consensus       157 ~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~  191 (723)
T 1xfd_A          157 VIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA  191 (723)
T ss_dssp             TEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred             ceECcccceeEEEEeccCcceEEECCCCCEEEEEE
Confidence                             125799999999887765

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=98.50  E-value=5.1e-05  Score=74.69  Aligned_cols=241  Identities=14%  Similarity=0.079  Sum_probs=139.4

Q ss_pred             CCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEE-eeccCCCcccCeEECCCCCEEEEeCCCcEEEE-cC-CC----
Q 018474           51 VNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVN-WKHIDSQSLLGLTTTKDGGVILCDNEKGLLKV-TE-EG----  123 (355)
Q Consensus        51 ~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~-~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~-~~-~g----  123 (355)
                      ...|.+++++|+++.+..+. ++.|..++..+++... +........ .+++.++|++.++...++.+++ +. ++    
T Consensus        18 ~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~-~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~   95 (611)
T 1nr0_A           18 RGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTT-VAKTSPSGYYCASGDVHGNVRIWDTTQTTHIL   95 (611)
T ss_dssp             TTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEEESSSTTCCE
T ss_pred             cCceeEEeeCCCCCEEEeCC-CCEEEEecCCCcccCeEecCCCCceE-EEEECCCCcEEEEEeCCCCEEEeECCCCccee
Confidence            45788899997666666665 5688889987665433 322234466 8999999997776555565554 42 33    


Q ss_pred             eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCE
Q 018474          124 VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDF  203 (355)
Q Consensus       124 ~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~  203 (355)
                      ...+......+++++++++|+..++.....             ...+.++.||.. .....+.......+.++++|++..
T Consensus        96 ~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~-------------~~~~~v~~wd~~-~~~~~l~gh~~~v~~v~f~p~~~~  161 (611)
T 1nr0_A           96 KTTIPVFSGPVKDISWDSESKRIAAVGEGR-------------ERFGHVFLFDTG-TSNGNLTGQARAMNSVDFKPSRPF  161 (611)
T ss_dssp             EEEEECSSSCEEEEEECTTSCEEEEEECCS-------------SCSEEEEETTTC-CBCBCCCCCSSCEEEEEECSSSSC
T ss_pred             eEeecccCCceEEEEECCCCCEEEEEECCC-------------CceeEEEEeeCC-CCcceecCCCCCceEEEECCCCCe
Confidence            223333336789999999997665533210             112456666632 111122222234567899999876


Q ss_pred             EEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhc
Q 018474          204 VVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISL  283 (355)
Q Consensus       204 l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (355)
                      .+++....+.|..|+....  .....+. ........+.+.++|++.++....                           
T Consensus       162 ~l~s~s~D~~v~lwd~~~~--~~~~~l~-~H~~~V~~v~fspdg~~las~s~D---------------------------  211 (611)
T 1nr0_A          162 RIISGSDDNTVAIFEGPPF--KFKSTFG-EHTKFVHSVRYNPDGSLFASTGGD---------------------------  211 (611)
T ss_dssp             EEEEEETTSCEEEEETTTB--EEEEEEC-CCSSCEEEEEECTTSSEEEEEETT---------------------------
T ss_pred             EEEEEeCCCeEEEEECCCC--eEeeeec-cccCceEEEEECCCCCEEEEEECC---------------------------
Confidence            5666667778888885321  1112222 233334567889999987766542                           


Q ss_pred             ccCCCCCCceEEEEEeCCCCeEEEEEECCC----CCcccceeEEEEe-CCEEEEeecCCCeEEEeeCCC
Q 018474          284 LLPMGSDAGARVVKVDGNDGKIIRDFNDPD----ATYISFVTSAAEF-DGNLYLASLQSNFIGILPLDG  347 (355)
Q Consensus       284 ~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~----g~~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~~~~  347 (355)
                               +.|..+|..+|+....+....    + ....+..+... ++++.++......|...++.+
T Consensus       212 ---------~~i~lwd~~~g~~~~~~~~~~~~~~~-h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~  270 (611)
T 1nr0_A          212 ---------GTIVLYNGVDGTKTGVFEDDSLKNVA-HSGSVFGLTWSPDGTKIASASADKTIKIWNVAT  270 (611)
T ss_dssp             ---------SCEEEEETTTCCEEEECBCTTSSSCS-SSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             ---------CcEEEEECCCCcEeeeeccccccccc-cCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCC
Confidence                     246666754666665553210    1 12245555554 344444444456666666653

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=98.49  E-value=8.7e-05  Score=78.96  Aligned_cols=240  Identities=13%  Similarity=0.074  Sum_probs=144.2

Q ss_pred             CCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeec-cCCCcccCeEECCCCCEEEEeCCCc-EEEEc-CCC--
Q 018474           49 GCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH-IDSQSLLGLTTTKDGGVILCDNEKG-LLKVT-EEG--  123 (355)
Q Consensus        49 ~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~-~~~~p~~gl~~d~~g~L~v~~~~~g-l~~~~-~~g--  123 (355)
                      +....-.++++.+++..+.+++.+|.|..++..+++...... ....+. ++++.++|++.++...++ +..++ .++  
T Consensus       613 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~-~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~  691 (1249)
T 3sfz_A          613 PHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVL-CCAFSSDDSYIATCSADKKVKIWDSATGKL  691 (1249)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred             cccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEE-EEEEecCCCEEEEEeCCCeEEEEECCCCce
Confidence            444556788999777778888889999999998876543322 234567 899999998666554545 55556 456  


Q ss_pred             eEEEcCCcCCcccEEEccCC--cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee-ccccccccEEEeCC
Q 018474          124 VEAIVPDASFTNDVIAASDG--TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFYFANGIALSKN  200 (355)
Q Consensus       124 ~~~~~~~~~~~~~l~~d~dG--~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~-~~~~~pngi~~~~d  200 (355)
                      +..+......+..+++.+++  .+.++.+.                 .+.+..||..+++..... ........++++|+
T Consensus       692 ~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~-----------------d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~  754 (1249)
T 3sfz_A          692 VHTYDEHSEQVNCCHFTNKSNHLLLATGSN-----------------DFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPD  754 (1249)
T ss_dssp             EEEEECCSSCEEEEEECSSSSCCEEEEEET-----------------TSCEEEEETTSSSEEEEECCCSSCEEEEEECSS
T ss_pred             EEEEcCCCCcEEEEEEecCCCceEEEEEeC-----------------CCeEEEEECCCcchhheecCCCCCEEEEEEecC
Confidence            55555444678888888853  45444322                 567888898777654332 22334567899999


Q ss_pred             CCEEEEEeCCCCeEEEEEeCCCCCc-ceeE---ec------ccCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhH
Q 018474          201 EDFVVVCESWKFRCRRYWLKGDRAG-ILDA---FI------ENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREK  270 (355)
Q Consensus       201 g~~l~v~~~~~~~i~~~~~~~~~~~-~~~~---~~------~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~  270 (355)
                      ++.++.+ +..+.|..|++...... ....   +.      .........+.++++|+..++...               
T Consensus       755 ~~~l~s~-s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~---------------  818 (1249)
T 3sfz_A          755 DELLASC-SADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAK---------------  818 (1249)
T ss_dssp             TTEEEEE-ESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEET---------------
T ss_pred             CCEEEEE-ECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcC---------------
Confidence            9955554 45678999987543211 0000   00      001112345678889987776654               


Q ss_pred             HHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEe-CCEEEEeecCCCeEEEeeCCC
Q 018474          271 WELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-DGNLYLASLQSNFIGILPLDG  347 (355)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~~~~  347 (355)
                                            +.+..++..+++....+....   ...++.+... ++++.+.+.....|..+++.+
T Consensus       819 ----------------------~~v~~~d~~~~~~~~~~~~~~---~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~  871 (1249)
T 3sfz_A          819 ----------------------NKVLLFDIHTSGLLAEIHTGH---HSTIQYCDFSPYDHLAVIALSQYCVELWNIDS  871 (1249)
T ss_dssp             ----------------------TEEEEEETTTCCEEEEEECSS---SSCCCEEEECSSTTEEEEECSSSCEEEEETTT
T ss_pred             ----------------------CcEEEEEecCCCceeEEcCCC---CCceEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Confidence                                  357777765666666554322   1133444433 244444444455666666543

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.48  E-value=1.1e-05  Score=78.78  Aligned_cols=175  Identities=15%  Similarity=0.099  Sum_probs=100.8

Q ss_pred             CceEEEeeCCCeEEEEec-CCEEEEEEcCCCeeEEeeccC-CCcccCeEECCCCCEEEEeC--C-C--cEEEEcC--CC-
Q 018474           54 PEDVSVVVSKGALYTATR-DGWVKYFILHNETLVNWKHID-SQSLLGLTTTKDGGVILCDN--E-K--GLLKVTE--EG-  123 (355)
Q Consensus        54 p~~i~~d~~~g~l~~~~~-~g~i~~~~~~~g~~~~~~~~~-~~p~~gl~~d~~g~L~v~~~--~-~--gl~~~~~--~g-  123 (355)
                      -.++++.+++..|..++. +|.+..++..+++.+++.... .... .+++.++..+|.++.  + .  .++.++.  +| 
T Consensus        24 ~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~-~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~~g~  102 (582)
T 3o4h_A           24 KYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVL-DPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGE  102 (582)
T ss_dssp             EEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEEC-EECTTCSEEEEEEECSTTSCCEEEEEEETTSTTC
T ss_pred             hheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccc-cccCCCCeEEEEeccCCCCcceEEEEEeccCCCc
Confidence            346677767777766554 787766666677776654433 2345 666777733455553  1 1  3666665  56 


Q ss_pred             eEEEcCCcCCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCC
Q 018474          124 VEAIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNED  202 (355)
Q Consensus       124 ~~~~~~~~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~  202 (355)
                      ...+... ......++++|| .++++...                 .+.+..||.++++.+.+.....  ..++++|||+
T Consensus       103 ~~~l~~~-~~~~~~~~s~dg~~~~~~s~~-----------------~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~  162 (582)
T 3o4h_A          103 EQRLEAV-KPMRILSGVDTGEAVVFTGAT-----------------EDRVALYALDGGGLRELARLPG--FGFVSDIRGD  162 (582)
T ss_dssp             CEECTTS-CSBEEEEEEECSSCEEEEEEC-----------------SSCEEEEEEETTEEEEEEEESS--CEEEEEEETT
T ss_pred             cccccCC-CCceeeeeCCCCCeEEEEecC-----------------CCCceEEEccCCcEEEeecCCC--ceEEECCCCC
Confidence            4443332 233345666666 34443322                 2234466777887766654332  7889999999


Q ss_pred             EEEEEeCC---CCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEe
Q 018474          203 FVVVCESW---KFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGL  253 (355)
Q Consensus       203 ~l~v~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~  253 (355)
                      .++.+...   ...|+++++++...   +.+. ...+.....++++||+..++.
T Consensus       163 ~la~~~~~~~~~~~i~~~d~~~g~~---~~l~-~~~~~~~~~~~SpDG~~l~~~  212 (582)
T 3o4h_A          163 LIAGLGFFGGGRVSLFTSNLSSGGL---RVFD-SGEGSFSSASISPGMKVTAGL  212 (582)
T ss_dssp             EEEEEEEEETTEEEEEEEETTTCCC---EEEC-CSSCEEEEEEECTTSCEEEEE
T ss_pred             EEEEEEEcCCCCeEEEEEcCCCCCc---eEee-cCCCccccceECCCCCEEEEc
Confidence            88755432   14588888765332   2332 223334567788899755533

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=98.48  E-value=3.2e-05  Score=69.38  Aligned_cols=222  Identities=13%  Similarity=0.057  Sum_probs=133.7

Q ss_pred             CCCCceEEEeeCCC-eEEEEecCCEEEEEEc-CCCeeEEeec--cCCCcccCeEECCCCCEEEEeCCCc-EEEEc-CC--
Q 018474           51 VNHPEDVSVVVSKG-ALYTATRDGWVKYFIL-HNETLVNWKH--IDSQSLLGLTTTKDGGVILCDNEKG-LLKVT-EE--  122 (355)
Q Consensus        51 ~~~p~~i~~d~~~g-~l~~~~~~g~i~~~~~-~~g~~~~~~~--~~~~p~~gl~~d~~g~L~v~~~~~g-l~~~~-~~--  122 (355)
                      -....++++.+++. .+++++.+|.|..++. .+++...+..  ....+. ++++.+ ++++++...++ +..++ .+  
T Consensus        56 ~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~-~l~~~~-~~~l~s~~~d~~i~iwd~~~~~  133 (342)
T 1yfq_A           56 KHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGIC-RICKYG-DDKLIAASWDGLIEVIDPRNYG  133 (342)
T ss_dssp             SSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEE-EEEEET-TTEEEEEETTSEEEEECHHHHT
T ss_pred             CCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceE-EEEeCC-CCEEEEEcCCCeEEEEcccccc
Confidence            35677899997777 7889999999999998 8887766654  445566 888888 66555443444 55555 23  


Q ss_pred             -------C--eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCC-Ce--EEEee-ccc
Q 018474          123 -------G--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKL-KE--TTVLH-EGF  189 (355)
Q Consensus       123 -------g--~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~-~~--~~~~~-~~~  189 (355)
                             +  +..+. ....+.++++++++ ++++..                  .+.+..||..+ ++  ..... ...
T Consensus       134 ~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~-l~~~~~------------------d~~i~i~d~~~~~~~~~~~~~~~~~  193 (342)
T 1yfq_A          134 DGVIAVKNLNSNNTK-VKNKIFTMDTNSSR-LIVGMN------------------NSQVQWFRLPLCEDDNGTIEESGLK  193 (342)
T ss_dssp             TBCEEEEESCSSSSS-SCCCEEEEEECSSE-EEEEES------------------TTEEEEEESSCCTTCCCEEEECSCS
T ss_pred             cccccccCCeeeEEe-eCCceEEEEecCCc-EEEEeC------------------CCeEEEEECCccccccceeeecCCC
Confidence                   2  11111 12567778888777 554422                  45788888766 32  22222 222


Q ss_pred             cccccEEEeC-CCCEEEEEeCCCCeEEEEEeCCC--C--CcceeEecccC--------CCCcCceEECCCCCEEEEeecC
Q 018474          190 YFANGIALSK-NEDFVVVCESWKFRCRRYWLKGD--R--AGILDAFIENL--------PGGPDNINLAPDGSFWIGLIKM  256 (355)
Q Consensus       190 ~~pngi~~~~-dg~~l~v~~~~~~~i~~~~~~~~--~--~~~~~~~~~~~--------~g~p~~i~~d~~G~lwv~~~~~  256 (355)
                      .....++++| +++.++.+. ..+.|..++++..  .  ......+....        .+....+.++++|++.++....
T Consensus       194 ~~i~~i~~~~~~~~~l~~~~-~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  272 (342)
T 1yfq_A          194 YQIRDVALLPKEQEGYACSS-IDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSD  272 (342)
T ss_dssp             SCEEEEEECSGGGCEEEEEE-TTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETT
T ss_pred             CceeEEEECCCCCCEEEEEe-cCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCC
Confidence            3457889999 998665554 5678888777543  1  11122222111        1123456788888755544331


Q ss_pred             CchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECC-CCCcccceeEEEEeCCEEEEeec
Q 018474          257 NQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDP-DATYISFVTSAAEFDGNLYLASL  335 (355)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~-~g~~~~~~~~~~~~~g~L~v~~~  335 (355)
                                                          +.|..+|..+++.+..+... .+    .+..+..++..|..++.
T Consensus       273 ------------------------------------g~i~vwd~~~~~~~~~~~~~h~~----~v~~~~~~~~~l~s~s~  312 (342)
T 1yfq_A          273 ------------------------------------GIISCWNLQTRKKIKNFAKFNED----SVVKIACSDNILCLATS  312 (342)
T ss_dssp             ------------------------------------SCEEEEETTTTEEEEECCCCSSS----EEEEEEECSSEEEEEEE
T ss_pred             ------------------------------------ceEEEEcCccHhHhhhhhcccCC----CceEecCCCCeEEEEec
Confidence                                                35778887578877777654 43    34555533455555554

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=98.47  E-value=6.4e-05  Score=70.17  Aligned_cols=184  Identities=13%  Similarity=0.081  Sum_probs=107.7

Q ss_pred             CCCceEEEeeCCCeEEEEecCCEEEEEEcCCCe------------eEEeeccC------------CCcccCeEECCCC--
Q 018474           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNET------------LVNWKHID------------SQSLLGLTTTKDG--  105 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~------------~~~~~~~~------------~~p~~gl~~d~~g--  105 (355)
                      ..-.++++.+++..|.+++.+|.|..++..+++            ...+....            ..+. .+++.+++  
T Consensus        29 ~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~-~l~~~~~~~~  107 (447)
T 3dw8_B           29 DIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKIN-KIRWLPQKNA  107 (447)
T ss_dssp             GSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCC-EEEECCCCSS
T ss_pred             CcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceE-EEEEcCCCCc
Confidence            445688899777778888999999999986654            22222112            3466 88998887  


Q ss_pred             CEEEEeCCCc-EEEEc-CCC-eE----------------------------------------EE-cCCcCCcccEEEcc
Q 018474          106 GVILCDNEKG-LLKVT-EEG-VE----------------------------------------AI-VPDASFTNDVIAAS  141 (355)
Q Consensus       106 ~L~v~~~~~g-l~~~~-~~g-~~----------------------------------------~~-~~~~~~~~~l~~d~  141 (355)
                      .++++...++ +..++ .++ ..                                        .+ ......+.++++++
T Consensus       108 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  187 (447)
T 3dw8_B          108 AQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINS  187 (447)
T ss_dssp             SEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECT
T ss_pred             ceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcC
Confidence            4444443444 44444 232 11                                        11 11225678889999


Q ss_pred             CCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCe-EEEee--------ccccccccEEEeCCC-CEEEEEeCCC
Q 018474          142 DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE-TTVLH--------EGFYFANGIALSKNE-DFVVVCESWK  211 (355)
Q Consensus       142 dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~-~~~~~--------~~~~~pngi~~~~dg-~~l~v~~~~~  211 (355)
                      +|+++++. .                 .+.+..||..+.. .....        ........++++|++ + ++++....
T Consensus       188 ~~~~l~s~-~-----------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~s~~~d  248 (447)
T 3dw8_B          188 DYETYLSA-D-----------------DLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCN-TFVYSSSK  248 (447)
T ss_dssp             TSSEEEEE-C-----------------SSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTT-EEEEEETT
T ss_pred             CCCEEEEe-C-----------------CCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCc-EEEEEeCC
Confidence            98877764 2                 5678888876322 21111        112235678999998 6 44555567


Q ss_pred             CeEEEEEeCCCCCc--ceeEecccCC-----------CCcCceEECCCCCEEEEeec
Q 018474          212 FRCRRYWLKGDRAG--ILDAFIENLP-----------GGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       212 ~~i~~~~~~~~~~~--~~~~~~~~~~-----------g~p~~i~~d~~G~lwv~~~~  255 (355)
                      +.|..|++......  ....+.....           +....+.++++|++.++...
T Consensus       249 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  305 (447)
T 3dw8_B          249 GTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY  305 (447)
T ss_dssp             SCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES
T ss_pred             CeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC
Confidence            78999998653321  1222321110           12455788999988776543

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=98.47  E-value=0.00012  Score=77.99  Aligned_cols=234  Identities=12%  Similarity=0.056  Sum_probs=144.5

Q ss_pred             CCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEee-ccCCCcccCeEECCC--CCEEEEeCCCc-EEEEc-CCC--
Q 018474           51 VNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWK-HIDSQSLLGLTTTKD--GGVILCDNEKG-LLKVT-EEG--  123 (355)
Q Consensus        51 ~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~-~~~~~p~~gl~~d~~--g~L~v~~~~~g-l~~~~-~~g--  123 (355)
                      -....++++.+++..+.+++.+|.|..+|..+++..... ....... .+++.++  +.+.++...++ +..++ .++  
T Consensus       657 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~  735 (1249)
T 3sfz_A          657 EDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVN-CCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC  735 (1249)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE-EEEECSSSSCCEEEEEETTSCEEEEETTSSSE
T ss_pred             CCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEE-EEEEecCCCceEEEEEeCCCeEEEEECCCcch
Confidence            345678899977777888888999999999888654332 2234456 7888764  44554443444 55566 455  


Q ss_pred             eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecc--------------c
Q 018474          124 VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG--------------F  189 (355)
Q Consensus       124 ~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~--------------~  189 (355)
                      ...+......+++++++++|...++.+.                 .+.+..||..+++.......              .
T Consensus       736 ~~~~~~h~~~v~~~~~sp~~~~l~s~s~-----------------dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  798 (1249)
T 3sfz_A          736 RNTMFGHTNSVNHCRFSPDDELLASCSA-----------------DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVE  798 (1249)
T ss_dssp             EEEECCCSSCEEEEEECSSTTEEEEEES-----------------SSEEEEEEGGGTEEEEEEECCCCC--------CCC
T ss_pred             hheecCCCCCEEEEEEecCCCEEEEEEC-----------------CCeEEEEeCCCCcccceecccccccccCCcccccc
Confidence            5555544467889999999987666433                 45677777765543222110              1


Q ss_pred             cccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchh
Q 018474          190 YFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCRE  269 (355)
Q Consensus       190 ~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~  269 (355)
                      .....+++++|++.+.++.  .+.+..|++....  ....+.....+....+.++++|++.++....             
T Consensus       799 ~~v~~~~~s~dg~~l~~~~--~~~v~~~d~~~~~--~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-------------  861 (1249)
T 3sfz_A          799 VIVKCCSWSADGDKIIVAA--KNKVLLFDIHTSG--LLAEIHTGHHSTIQYCDFSPYDHLAVIALSQ-------------  861 (1249)
T ss_dssp             CCBCCCCBCTTSSEEEEEE--TTEEEEEETTTCC--EEEEEECSSSSCCCEEEECSSTTEEEEECSS-------------
T ss_pred             ceEEEEEECCCCCEEEEEc--CCcEEEEEecCCC--ceeEEcCCCCCceEEEEEcCCCCEEEEEeCC-------------
Confidence            1345688999999777765  4789999875432  1222221233345667889999877766442             


Q ss_pred             HHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEe-CCEEEEeecCCCeEEEeeCC
Q 018474          270 KWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-DGNLYLASLQSNFIGILPLD  346 (355)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~~~  346 (355)
                                             +.|..++..+++....+..+.+    .++.+... +++..++......|...++.
T Consensus       862 -----------------------g~v~vwd~~~~~~~~~~~~h~~----~v~~v~~spdg~~l~s~s~dg~v~vw~~~  912 (1249)
T 3sfz_A          862 -----------------------YCVELWNIDSRLKVADCRGHLS----WVHGVMFSPDGSSFLTASDDQTIRVWETK  912 (1249)
T ss_dssp             -----------------------SCEEEEETTTTEEEEEECCCSS----CEEEEEECTTSSEEEEEETTSCEEEEEHH
T ss_pred             -----------------------CeEEEEEcCCCceeeecCCCcc----ceEEEEECCCCCEEEEEeCCCeEEEEEcc
Confidence                                   3466677656676666655443    45555554 34434443345666666543

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=98.47  E-value=8.2e-05  Score=67.13  Aligned_cols=149  Identities=9%  Similarity=-0.032  Sum_probs=93.4

Q ss_pred             CCCceEEEeeC----CCeEEEEecCCEEEEEEcCCCeeEEeec-cCCCcccCeEECC-CCCEEEEeCCC-cEEEEc-CCC
Q 018474           52 NHPEDVSVVVS----KGALYTATRDGWVKYFILHNETLVNWKH-IDSQSLLGLTTTK-DGGVILCDNEK-GLLKVT-EEG  123 (355)
Q Consensus        52 ~~p~~i~~d~~----~g~l~~~~~~g~i~~~~~~~g~~~~~~~-~~~~p~~gl~~d~-~g~L~v~~~~~-gl~~~~-~~g  123 (355)
                      ....++++.++    +..++++..+|.|..++..+++...... ....+. ++++.+ +++++++...+ .+..++ .++
T Consensus        70 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  148 (366)
T 3k26_A           70 ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAIN-ELKFHPRDPNLLLSVSKDHALRLWNIQTD  148 (366)
T ss_dssp             CCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEE-EEEECSSCTTEEEEEETTSCEEEEETTTT
T ss_pred             CcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEE-EEEECCCCCCEEEEEeCCCeEEEEEeecC
Confidence            34567888865    3467788899999999987776543332 344567 899988 77765554444 466666 455


Q ss_pred             --eEEE---cCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEe-------------
Q 018474          124 --VEAI---VPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL-------------  185 (355)
Q Consensus       124 --~~~~---~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~-------------  185 (355)
                        ...+   ......+.+++++++|...++...                 .+.+..||..+++....             
T Consensus       149 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  211 (366)
T 3k26_A          149 TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGM-----------------DHSLKLWRINSKRMMNAIKESYDYNPNKTN  211 (366)
T ss_dssp             EEEEEECSTTSCSSCEEEEEECTTSSEEEEEET-----------------TSCEEEEESCSHHHHHHHHHHHTCCGGGCS
T ss_pred             eEEEEecccccccCceeEEEECCCCCEEEEecC-----------------CCCEEEEECCCCccccccceeEEecCCCCc
Confidence              4444   223367889999999976665432                 34566777654432100             


Q ss_pred             ----------------eccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCC
Q 018474          186 ----------------HEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKG  221 (355)
Q Consensus       186 ----------------~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~  221 (355)
                                      .........++++  ++ ++++....+.|..|++..
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~~~~~d~~i~~wd~~~  260 (366)
T 3k26_A          212 RPFISQKIHFPDFSTRDIHRNYVDCVRWL--GD-LILSKSCENAIVCWKPGK  260 (366)
T ss_dssp             SCCCCEEECCCSEEECSSCSSCCCEEEEE--TT-EEEEECSSSEEEEEEESS
T ss_pred             ccccceeeccCccccccCCcceEEEEEEc--CC-EEEEEecCCEEEEEeCCC
Confidence                            0011223456776  55 455556678899999854

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=98.46  E-value=2.6e-06  Score=78.00  Aligned_cols=149  Identities=5%  Similarity=-0.092  Sum_probs=89.6

Q ss_pred             CCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEee---ccCCCcccCeEECCCCCEEEEeCCCc-EEEEc-CCC----
Q 018474           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWK---HIDSQSLLGLTTTKDGGVILCDNEKG-LLKVT-EEG----  123 (355)
Q Consensus        53 ~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~---~~~~~p~~gl~~d~~g~L~v~~~~~g-l~~~~-~~g----  123 (355)
                      .-.++++.+++..|.+++.+|.|..++..++.++...   .....+. ++++.++|+++++...++ +..++ .++    
T Consensus        13 ~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~-~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~   91 (377)
T 3dwl_C           13 PSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVT-CVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWK   91 (377)
T ss_dssp             CCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEE-EEEECTTTCCEEEEETTSSEEEC------CCC
T ss_pred             cEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEE-EEEEeCCCCEEEEEeCCCeEEEEEcCCCCcee
Confidence            4568889976666777778999999998777433222   1233466 889998887555444444 44444 222    


Q ss_pred             -eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCe----EEEeec-cccccccEEE
Q 018474          124 -VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE----TTVLHE-GFYFANGIAL  197 (355)
Q Consensus       124 -~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~----~~~~~~-~~~~pngi~~  197 (355)
                       ...+......+.+++++++|++.++.+.                 .+.+..||.++++    ...+.. .......+++
T Consensus        92 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------------d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~  154 (377)
T 3dwl_C           92 QTLVLLRLNRAATFVRWSPNEDKFAVGSG-----------------ARVISVCYFEQENDWWVSKHLKRPLRSTILSLDW  154 (377)
T ss_dssp             CEEECCCCSSCEEEEECCTTSSCCEEEES-----------------SSCEEECCC-----CCCCEEECSSCCSCEEEEEE
T ss_pred             eeeEecccCCceEEEEECCCCCEEEEEec-----------------CCeEEEEEECCcccceeeeEeecccCCCeEEEEE
Confidence             1222222367888999998865554322                 3457777766554    233332 2334578999


Q ss_pred             eCCCCEEEEEeCCCCeEEEEEeC
Q 018474          198 SKNEDFVVVCESWKFRCRRYWLK  220 (355)
Q Consensus       198 ~~dg~~l~v~~~~~~~i~~~~~~  220 (355)
                      +|+++.++.+. ..+.|..|+++
T Consensus       155 ~~~~~~l~~~~-~d~~i~iwd~~  176 (377)
T 3dwl_C          155 HPNNVLLAAGC-ADRKAYVLSAY  176 (377)
T ss_dssp             CTTSSEEEEEE-SSSCEEEEEEC
T ss_pred             cCCCCEEEEEe-CCCEEEEEEEE
Confidence            99998665554 56788888874

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=98.46  E-value=0.00035  Score=68.72  Aligned_cols=186  Identities=10%  Similarity=0.023  Sum_probs=113.3

Q ss_pred             CCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCe--eE-EeeccCCCcccCeEECCCCCEEEEeCCC----cEEEEcC
Q 018474           49 GCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNET--LV-NWKHIDSQSLLGLTTTKDGGVILCDNEK----GLLKVTE  121 (355)
Q Consensus        49 ~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~--~~-~~~~~~~~p~~gl~~d~~g~L~v~~~~~----gl~~~~~  121 (355)
                      +.-..-.++++.|++..|..++.+|.|..+|..+++  .. .+....+... .++++++|+..++...+    +.+++-.
T Consensus        57 ~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~-~v~fs~dg~~l~~~~~~~~~~~~v~~wd  135 (611)
T 1nr0_A           57 EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVK-DISWDSESKRIAAVGEGRERFGHVFLFD  135 (611)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEE-EEEECTTSCEEEEEECCSSCSEEEEETT
T ss_pred             CCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceE-EEEECCCCCEEEEEECCCCceeEEEEee
Confidence            333445678899777778888899999999985442  22 2222234567 89999999866654321    2333333


Q ss_pred             CC--eEEEcCCcCCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecc-ccccccEEE
Q 018474          122 EG--VEAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG-FYFANGIAL  197 (355)
Q Consensus       122 ~g--~~~~~~~~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~-~~~pngi~~  197 (355)
                      .+  ...+......++++++.|++. ..++.+.                 .+.+..||..+++......+ ....+.+++
T Consensus       136 ~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~-----------------D~~v~lwd~~~~~~~~~l~~H~~~V~~v~f  198 (611)
T 1nr0_A          136 TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSD-----------------DNTVAIFEGPPFKFKSTFGEHTKFVHSVRY  198 (611)
T ss_dssp             TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEET-----------------TSCEEEEETTTBEEEEEECCCSSCEEEEEE
T ss_pred             CCCCcceecCCCCCceEEEECCCCCeEEEEEeC-----------------CCeEEEEECCCCeEeeeeccccCceEEEEE
Confidence            33  333333336788999999985 3444332                 45677788766654332222 234578999


Q ss_pred             eCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecc------cCCCCcCceEECCCCCEEEEeec
Q 018474          198 SKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIE------NLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       198 ~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~------~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      +||++. +++....+.|..+++....  ....+..      ...+....+.++++|++.++...
T Consensus       199 spdg~~-las~s~D~~i~lwd~~~g~--~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~  259 (611)
T 1nr0_A          199 NPDGSL-FASTGGDGTIVLYNGVDGT--KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA  259 (611)
T ss_dssp             CTTSSE-EEEEETTSCEEEEETTTCC--EEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEET
T ss_pred             CCCCCE-EEEEECCCcEEEEECCCCc--EeeeeccccccccccCCCEEEEEECCCCCEEEEEeC
Confidence            999994 4555567788888864321  1111211      12233455788999987776654

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=98.46  E-value=6.6e-05  Score=75.00  Aligned_cols=186  Identities=15%  Similarity=0.172  Sum_probs=114.7

Q ss_pred             CCCCCCceEEEeeCC-CeEEEEecCCEEEEEEcCCCe-----e-EEeeccCCCcccCeEECCCCCEEEEeCCCcEEE-Ec
Q 018474           49 GCVNHPEDVSVVVSK-GALYTATRDGWVKYFILHNET-----L-VNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLK-VT  120 (355)
Q Consensus        49 ~~~~~p~~i~~d~~~-g~l~~~~~~g~i~~~~~~~g~-----~-~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~-~~  120 (355)
                      +.-..-.++++.+++ ..|..++.|+.|..++..++.     . ..+......+. ++++.++|++.++...++.++ ++
T Consensus       380 ~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~-~v~~s~~g~~l~sgs~Dg~v~vwd  458 (694)
T 3dm0_A          380 AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVE-DVVLSSDGQFALSGSWDGELRLWD  458 (694)
T ss_dssp             CCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEE-EEEECTTSSEEEEEETTSEEEEEE
T ss_pred             cCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEE-EEEECCCCCEEEEEeCCCcEEEEE
Confidence            444455677776544 456678889999999875431     1 12222234466 889999998776655556444 45


Q ss_pred             -CCC--eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecc----ccccc
Q 018474          121 -EEG--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG----FYFAN  193 (355)
Q Consensus       121 -~~g--~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~----~~~pn  193 (355)
                       .++  .+.+......+.+++++++|+..++.+.                 .+.+..||..+.....+...    .....
T Consensus       459 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~-----------------D~~i~iwd~~~~~~~~~~~~~~~h~~~v~  521 (694)
T 3dm0_A          459 LAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASR-----------------DRTIKLWNTLGECKYTISEGGEGHRDWVS  521 (694)
T ss_dssp             TTTTEEEEEEECCSSCEEEEEECTTSSCEEEEET-----------------TSCEEEECTTSCEEEEECSSTTSCSSCEE
T ss_pred             CCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeC-----------------CCEEEEEECCCCcceeeccCCCCCCCcEE
Confidence             355  4555444467889999999976665433                 45677777655443333221    12245


Q ss_pred             cEEEeCCCC-EEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474          194 GIALSKNED-FVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       194 gi~~~~dg~-~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      .++++|++. ..+++....+.|..|+++..+.  ...+. ...+....+.++++|++.++...
T Consensus       522 ~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~--~~~~~-~h~~~v~~v~~spdg~~l~sg~~  581 (694)
T 3dm0_A          522 CVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL--RSTLA-GHTGYVSTVAVSPDGSLCASGGK  581 (694)
T ss_dssp             EEEECSCSSSCEEEEEETTSCEEEEETTTCCE--EEEEC-CCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEEeCCCCcceEEEEeCCCeEEEEECCCCcE--EEEEc-CCCCCEEEEEEeCCCCEEEEEeC
Confidence            788999873 3556666678899999854321  22222 33344566788999988776654

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=98.45  E-value=3.1e-05  Score=71.78  Aligned_cols=185  Identities=14%  Similarity=0.109  Sum_probs=118.2

Q ss_pred             CCCCCceEEEeeCC-CeEEEEecCCEEEEEEcCCCeeEEee--c-cCCCcccCeEECCCCCEEEEeCCCc-EEEEc-CCC
Q 018474           50 CVNHPEDVSVVVSK-GALYTATRDGWVKYFILHNETLVNWK--H-IDSQSLLGLTTTKDGGVILCDNEKG-LLKVT-EEG  123 (355)
Q Consensus        50 ~~~~p~~i~~d~~~-g~l~~~~~~g~i~~~~~~~g~~~~~~--~-~~~~p~~gl~~d~~g~L~v~~~~~g-l~~~~-~~g  123 (355)
                      .-....++++.+.+ ..+++++.+|.|..+|..+++.....  . ....+. ++++.++|+++++...++ +..++ .++
T Consensus       130 h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~  208 (402)
T 2aq5_A          130 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIY-SVDWSRDGALICTSCRDKRVRVIEPRKG  208 (402)
T ss_dssp             CSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEE-EEEECTTSSCEEEEETTSEEEEEETTTT
T ss_pred             CCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceE-EEEECCCCCEEEEEecCCcEEEEeCCCC
Confidence            34556788998665 46778888999999999888765433  2 234566 899999887555444444 55666 455


Q ss_pred             --eEEE-cCCc-CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeE--EEe-eccccccccEE
Q 018474          124 --VEAI-VPDA-SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKET--TVL-HEGFYFANGIA  196 (355)
Q Consensus       124 --~~~~-~~~~-~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~--~~~-~~~~~~pngi~  196 (355)
                        +..+ .... ..+..++++++|.++++...              ....+.+..||..+++.  ... .........++
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~--------------~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~  274 (402)
T 2aq5_A          209 TVVAEKDRPHEGTRPVHAVFVSEGKILTTGFS--------------RMSERQVALWDTKHLEEPLSLQELDTSSGVLLPF  274 (402)
T ss_dssp             EEEEEEECSSCSSSCCEEEECSTTEEEEEEEC--------------TTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEE
T ss_pred             ceeeeeccCCCCCcceEEEEcCCCcEEEEecc--------------CCCCceEEEEcCccccCCceEEeccCCCceeEEE
Confidence              4444 2222 34788999999987766411              01256788888866532  111 12233466789


Q ss_pred             EeCCCCEEEEEeCCCCeEEEEEeCCCC--CcceeEecccCCCCcCceEECCCCCEEE
Q 018474          197 LSKNEDFVVVCESWKFRCRRYWLKGDR--AGILDAFIENLPGGPDNINLAPDGSFWI  251 (355)
Q Consensus       197 ~~~dg~~l~v~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~g~p~~i~~d~~G~lwv  251 (355)
                      +++|++.++++....+.|..|+++...  ......+  ...+...++.+.++|.+.+
T Consensus       275 ~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~--~~~~~v~~~~~sp~~~~~~  329 (402)
T 2aq5_A          275 FDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMF--SSKESQRGMGYMPKRGLEV  329 (402)
T ss_dssp             EETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEE--CCSSCCSEEEECCGGGSCG
T ss_pred             EcCCCCEEEEEEcCCCeEEEEEecCCCcceEeeccc--ccCCcccceEEecccccce
Confidence            999999998888778899999986543  1122211  1223456778888776544

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=98.45  E-value=2.7e-05  Score=70.70  Aligned_cols=181  Identities=9%  Similarity=-0.029  Sum_probs=111.3

Q ss_pred             CCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEee---ccCCCcccCeEECCCCCEEEE-eCCCcEEEEc-CCC--
Q 018474           51 VNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWK---HIDSQSLLGLTTTKDGGVILC-DNEKGLLKVT-EEG--  123 (355)
Q Consensus        51 ~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~---~~~~~p~~gl~~d~~g~L~v~-~~~~gl~~~~-~~g--  123 (355)
                      -....++++.+++..+++++.+|.|..++..+++.....   .....+. .+++.++++.+++ ...+.+..++ ..+  
T Consensus        52 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~  130 (372)
T 1k8k_C           52 NGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAAR-CVRWAPNEKKFAVGSGSRVISICYFEQEND  130 (372)
T ss_dssp             SSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEE-EEEECTTSSEEEEEETTSSEEEEEEETTTT
T ss_pred             CCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCcee-EEEECCCCCEEEEEeCCCEEEEEEecCCCc
Confidence            345678999977777888888999999998777644322   2234566 8899988875554 4333454444 222  


Q ss_pred             ---eEEEcCC-cCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCC------------------CCe
Q 018474          124 ---VEAIVPD-ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPK------------------LKE  181 (355)
Q Consensus       124 ---~~~~~~~-~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~------------------~~~  181 (355)
                         ...+... ...+.+++++++|+++++...                 .+.+..||..                  +++
T Consensus       131 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----------------dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~  193 (372)
T 1k8k_C          131 WWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC-----------------DFKCRIFSAYIKEVEERPAPTPWGSKMPFGE  193 (372)
T ss_dssp             EEEEEEECTTCCSCEEEEEECTTSSEEEEEET-----------------TSCEEEEECCCTTTSCCCCCBTTBSCCCTTC
T ss_pred             ceeeeeeecccCCCeeEEEEcCCCCEEEEEcC-----------------CCCEEEEEcccccccccccccccccccchhh
Confidence               1222222 267888999999976665432                 4456677732                  333


Q ss_pred             E-EEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEe
Q 018474          182 T-TVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGL  253 (355)
Q Consensus       182 ~-~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~  253 (355)
                      . ..+.........++++|+++.++.+. ..+.|..|+++..+  ....+. ........+.++++|++.++.
T Consensus       194 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~--~~~~~~-~~~~~v~~~~~~~~~~~l~~~  262 (372)
T 1k8k_C          194 LMFESSSSCGWVHGVCFSANGSRVAWVS-HDSTVCLADADKKM--AVATLA-SETLPLLAVTFITESSLVAAG  262 (372)
T ss_dssp             EEEECCCCSSCEEEEEECSSSSEEEEEE-TTTEEEEEEGGGTT--EEEEEE-CSSCCEEEEEEEETTEEEEEE
T ss_pred             heEecCCCCCeEEEEEECCCCCEEEEEe-CCCEEEEEECCCCc--eeEEEc-cCCCCeEEEEEecCCCEEEEE
Confidence            2 22222233457899999999666554 56789999985432  122222 222224557788888766655

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=98.44  E-value=0.00018  Score=65.25  Aligned_cols=186  Identities=15%  Similarity=0.131  Sum_probs=108.7

Q ss_pred             CCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEE---eeccCCCcccCeEECCC--CCEEEEeCCCc-EEEEc-CCC
Q 018474           51 VNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVN---WKHIDSQSLLGLTTTKD--GGVILCDNEKG-LLKVT-EEG  123 (355)
Q Consensus        51 ~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~---~~~~~~~p~~gl~~d~~--g~L~v~~~~~g-l~~~~-~~g  123 (355)
                      -..-.++++.+++..|.++..+|.|..++..++....   +......+. ++++.++  ++++++...+| +..++ .++
T Consensus        11 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~   89 (379)
T 3jrp_A           11 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVW-RVDWAHPKFGTILASCSYDGKVLIWKEENG   89 (379)
T ss_dssp             CCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEE-EEEECCGGGCSEEEEEETTSCEEEEEEETT
T ss_pred             cccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEE-EEEeCCCCCCCEEEEeccCCEEEEEEcCCC
Confidence            3456788899777778888889999999886443322   221233456 7888755  76555444444 55555 344


Q ss_pred             -e---EEEcCCcCCcccEEEccC--CcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCe---EEEeecccccccc
Q 018474          124 -V---EAIVPDASFTNDVIAASD--GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE---TTVLHEGFYFANG  194 (355)
Q Consensus       124 -~---~~~~~~~~~~~~l~~d~d--G~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~---~~~~~~~~~~png  194 (355)
                       .   ..+......+.+++++++  |.+.++...                 .+.+..||..+++   ...+.........
T Consensus        90 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-----------------d~~i~v~d~~~~~~~~~~~~~~~~~~v~~  152 (379)
T 3jrp_A           90 RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS-----------------DGKVSVVEFKENGTTSPIIIDAHAIGVNS  152 (379)
T ss_dssp             EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET-----------------TSEEEEEECCTTSCCCEEEEECCTTCEEE
T ss_pred             ceeEeeeecCCCcceEEEEeCCCCCCCEEEEecC-----------------CCcEEEEecCCCCceeeEEecCCCCceEE
Confidence             2   222223367888999998  766655433                 4577788776552   1222222333567


Q ss_pred             EEEeC-------------CCCEEEEEeCCCCeEEEEEeCCCCCc-ceeEecccCCCCcCceEECCC---CCEEEEeec
Q 018474          195 IALSK-------------NEDFVVVCESWKFRCRRYWLKGDRAG-ILDAFIENLPGGPDNINLAPD---GSFWIGLIK  255 (355)
Q Consensus       195 i~~~~-------------dg~~l~v~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~g~p~~i~~d~~---G~lwv~~~~  255 (355)
                      ++++|             |++.++.+ ...+.|..|++...... ..........+....+.++++   |++.++...
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~  229 (379)
T 3jrp_A          153 ASWAPATIEEDGEHNGTKESRKFVTG-GADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ  229 (379)
T ss_dssp             EEECCCC----------CTTCEEEEE-ETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET
T ss_pred             EEEcCccccccccccCCCCCCEEEEE-eCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeC
Confidence            88888             67755554 45678999988643211 111111122233456778888   666665544

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.40  E-value=5.3e-05  Score=68.64  Aligned_cols=187  Identities=18%  Similarity=0.216  Sum_probs=113.4

Q ss_pred             CCCEEEEeCC-CcEEEEcCCC--eEEEcCCcCCcccEEEccC----C----cEEEEeCCCCCCCccccccccccCCCCeE
Q 018474          104 DGGVILCDNE-KGLLKVTEEG--VEAIVPDASFTNDVIAASD----G----TLYFTVASTKYTPTDFYKDMAEGKPYGQL  172 (355)
Q Consensus       104 ~g~L~v~~~~-~gl~~~~~~g--~~~~~~~~~~~~~l~~d~d----G----~ly~~d~~~~~~~~~~~~~~~~~~~~g~l  172 (355)
                      ...+++++.. +||+.|+.+|  ++.+..  ..+|.+.+-++    |    .+++++..             ++...-.+
T Consensus        39 ~~s~ii~t~k~~gL~Vydl~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~-------------~~~n~l~v  103 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSLDGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRS-------------EGKNTIEI  103 (355)
T ss_dssp             GGCEEEEEETTTEEEEEETTSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECS-------------TTCCEEEE
T ss_pred             CccEEEEEcCCCCEEEEcCCCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCC-------------CCCCeEEE
Confidence            4455665433 5788888766  555543  34666655441    2    23455432             00112356


Q ss_pred             EEEeCCCCeEEEee-------ccccccccEEE--eCC-CC-EEEEEeCCCCeEEEEEeCCC---CC--cceeEecccCCC
Q 018474          173 RKYDPKLKETTVLH-------EGFYFANGIAL--SKN-ED-FVVVCESWKFRCRRYWLKGD---RA--GILDAFIENLPG  236 (355)
Q Consensus       173 ~~~dp~~~~~~~~~-------~~~~~pngi~~--~~d-g~-~l~v~~~~~~~i~~~~~~~~---~~--~~~~~~~~~~~g  236 (355)
                      |.+||++++++.+.       ..+..|.|+|+  +++ ++ ++|+++. .+++.+|.+...   +.  ...+.|  .+++
T Consensus       104 f~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k-~G~~~q~~l~~~~~g~~~~~lVR~f--~lgs  180 (355)
T 3amr_A          104 YAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGK-EGEFEQYELKADKNGYISGKKVRAF--KMNS  180 (355)
T ss_dssp             EEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECS-SSEEEEEEEEECTTSCEEEEEEEEE--ECSS
T ss_pred             EEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECC-CCeEEEEEEEeCCCCcccceEEEEe--cCCC
Confidence            67799888887662       33477999999  664 44 5777765 478999887321   11  112223  3566


Q ss_pred             CcCceEECC-CCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEe--CCC---CeEEEEEE
Q 018474          237 GPDNINLAP-DGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVD--GND---GKIIRDFN  310 (355)
Q Consensus       237 ~p~~i~~d~-~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~---g~~~~~~~  310 (355)
                      .|.+++.|+ .|.|||+...                                     .+|++|+  |+.   ++.+..+.
T Consensus       181 q~EgcvvDd~~g~Lyv~eEd-------------------------------------~GIw~~da~p~~~~~~~~v~~~~  223 (355)
T 3amr_A          181 QTEGMAADDEYGRLYIAEED-------------------------------------EAIWKFSAEPDGGSNGTVIDRAD  223 (355)
T ss_dssp             CEEEEEEETTTTEEEEEETT-------------------------------------TEEEEEECSTTSCSCCEEEEEBS
T ss_pred             CcceEEEcCCCCeEEEeccc-------------------------------------ceEEEEeCCcCCCCCceEEEEec
Confidence            789999985 5789999865                                     3699999  421   34444442


Q ss_pred             CCCCCcccceeEEEE--eC---CEEEEeecCCCeEEEeeCCC
Q 018474          311 DPDATYISFVTSAAE--FD---GNLYLASLQSNFIGILPLDG  347 (355)
Q Consensus       311 ~~~g~~~~~~~~~~~--~~---g~L~v~~~~~~~i~~~~~~~  347 (355)
                      .  +.....+.++..  ..   |+|++++-.++.+.+|+...
T Consensus       224 ~--g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~  263 (355)
T 3amr_A          224 G--RHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQG  263 (355)
T ss_dssp             S--SSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred             C--CccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCC
Confidence            2  222224555543  22   58999999999999998863

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=98.40  E-value=2.2e-05  Score=72.98  Aligned_cols=138  Identities=9%  Similarity=-0.032  Sum_probs=85.2

Q ss_pred             EeeCCCeEEEEecCCEEEEEEcCC--CeeEEee--ccCCCcccCeEECC--CCCEEEEeCCC----cEEEEcCCC--eEE
Q 018474           59 VVVSKGALYTATRDGWVKYFILHN--ETLVNWK--HIDSQSLLGLTTTK--DGGVILCDNEK----GLLKVTEEG--VEA  126 (355)
Q Consensus        59 ~d~~~g~l~~~~~~g~i~~~~~~~--g~~~~~~--~~~~~p~~gl~~d~--~g~L~v~~~~~----gl~~~~~~g--~~~  126 (355)
                      .| +.+.||+++..| +++++..+  .+++.+.  ....... +|++|+  +++||++...+    +|++.+..|  .+.
T Consensus        19 ~d-~~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~-~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~   95 (394)
T 3b7f_A           19 ES-GPVMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIH-HIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTE   95 (394)
T ss_dssp             CC-SCCEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEE-EEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEE
T ss_pred             CC-CCCEEEEEecCc-eEEEECCCCCCCceECCccCCCCceE-EEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceE
Confidence            44 578999999766 78887644  3566542  2234577 899998  78999998665    688876544  454


Q ss_pred             EcCCc--------------CCcccEEEcc---CCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccc
Q 018474          127 IVPDA--------------SFTNDVIAAS---DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGF  189 (355)
Q Consensus       127 ~~~~~--------------~~~~~l~~d~---dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~  189 (355)
                      +....              ..+.++++++   .+++|+...                  .++|++.+..+..++.+....
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~------------------~ggl~~S~DgG~tW~~~~~~~  157 (394)
T 3b7f_A           96 ATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTS------------------PQGLFRSTDHGASWEPVAGFN  157 (394)
T ss_dssp             CSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEE------------------TTEEEEESSTTSBCEECHHHH
T ss_pred             CCccccCCCcccccccccccceeEEEeCCCCCCCEEEEEec------------------CCcEEEEcCCCCCeEECcCcc
Confidence            43211              1244577885   578998632                  357888876666666553210


Q ss_pred             c-------------------ccccEEEeCC-CCEEEEEeCCCCeEEEEE
Q 018474          190 Y-------------------FANGIALSKN-EDFVVVCESWKFRCRRYW  218 (355)
Q Consensus       190 ~-------------------~pngi~~~~d-g~~l~v~~~~~~~i~~~~  218 (355)
                      .                   .-..|+++|. .+.+|++.. .++|++.+
T Consensus       158 ~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~-~ggl~~s~  205 (394)
T 3b7f_A          158 DHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMS-SGGVFEST  205 (394)
T ss_dssp             TCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEE-TBEEEEES
T ss_pred             CCccccccccccccCCCCCCceeEEEECCCCCCEEEEEEC-CCCEEEEC
Confidence            0                   1125777763 345777743 35677664

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=98.40  E-value=0.00026  Score=66.01  Aligned_cols=236  Identities=11%  Similarity=0.016  Sum_probs=139.5

Q ss_pred             CceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeecc-CCCcccCeEECCCCCEEEEeCCCc-EEEEc-CCC---eEEE
Q 018474           54 PEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI-DSQSLLGLTTTKDGGVILCDNEKG-LLKVT-EEG---VEAI  127 (355)
Q Consensus        54 p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~-~~~p~~gl~~d~~g~L~v~~~~~g-l~~~~-~~g---~~~~  127 (355)
                      -.++++.+++..|.+++.+|.|..++..+++....... ..... .+..  ++++.++....+ +...+ ...   +..+
T Consensus       150 V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~-~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~~  226 (420)
T 4gga_A          150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVG-SLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATL  226 (420)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceE-EEee--CCCEEEEEeCCCceeEeeecccceeeEEe
Confidence            46899997777888899999999999988875543322 22333 4544  455555444444 44444 222   4444


Q ss_pred             cCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeE-----EEeeccccccccEEEeCCCC
Q 018474          128 VPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKET-----TVLHEGFYFANGIALSKNED  202 (355)
Q Consensus       128 ~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~-----~~~~~~~~~pngi~~~~dg~  202 (355)
                      ......+..+...++|+..++...                 .+.+..++..+++.     ............++++|++.
T Consensus       227 ~~h~~~~~~~~~~~~g~~l~s~~~-----------------D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~  289 (420)
T 4gga_A          227 SGHSQEVCGLRWAPDGRHLASGGN-----------------DNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQS  289 (420)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEET-----------------TSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCT
T ss_pred             cccccceeeeeecCCCCeeeeeec-----------------cccceEEeeccccccceeeeeecccCCceeeeeeCCCcc
Confidence            444466777888888876665432                 34566666544431     11111122235678888776


Q ss_pred             EEEEEe--CCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccch
Q 018474          203 FVVVCE--SWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGL  280 (355)
Q Consensus       203 ~l~v~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (355)
                      .++.+.  +..+.|..|++.....  ...+.  .......+.+.++++..++..+                         
T Consensus       290 ~~la~~~gs~D~~I~iwd~~t~~~--~~~~~--~~~~v~~~~~~~~~~~lv~~sg-------------------------  340 (420)
T 4gga_A          290 NVLATGGGTSDRHIRIWNVCSGAC--LSAVD--AHSQVCSILWSPHYKELISGHG-------------------------  340 (420)
T ss_dssp             TEEEEEECTTTCEEEEEETTTTEE--EEEEE--CSSCEEEEEEETTTTEEEEEEC-------------------------
T ss_pred             cEEEEEeecCCCEEEEEeCCcccc--ceeec--cccceeeeeecCCCCeEEEEEe-------------------------
Confidence            555543  3456788888754221  11121  1223455667788876666543                         


Q ss_pred             hhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEe-CCEEEEeecCCCeEEEeeCCCCCCC
Q 018474          281 ISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-DGNLYLASLQSNFIGILPLDGPEPQ  351 (355)
Q Consensus       281 ~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~~~~~~~~  351 (355)
                               ...+.|..+|..+++.+..+..+.+    .++.+... +|++.++......|...++....|.
T Consensus       341 ---------~~d~~I~iwd~~~~~~v~~l~gH~~----~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~  399 (420)
T 4gga_A          341 ---------FAQNQLVIWKYPTMAKVAELKGHTS----RVLSLTMSPDGATVASAAADETLRLWRCFELDPA  399 (420)
T ss_dssp             ---------TTTCCEEEEETTTCCEEEEECCCSS----CEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC
T ss_pred             ---------cCCCEEEEEECCCCcEEEEEcCCCC----CEEEEEEcCCCCEEEEEecCCeEEEEECCCCCcc
Confidence                     1124577788658888888876654    46666665 3555555555677888787665543

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=98.39  E-value=8.7e-05  Score=66.80  Aligned_cols=183  Identities=8%  Similarity=0.018  Sum_probs=107.2

Q ss_pred             CCCceEEEeeC---CCeEEEEecCCEEEEEEcCCCe--eEEeeccCCCcccCe------EECCCCCEEEEeCCCc-EEEE
Q 018474           52 NHPEDVSVVVS---KGALYTATRDGWVKYFILHNET--LVNWKHIDSQSLLGL------TTTKDGGVILCDNEKG-LLKV  119 (355)
Q Consensus        52 ~~p~~i~~d~~---~g~l~~~~~~g~i~~~~~~~g~--~~~~~~~~~~p~~gl------~~d~~g~L~v~~~~~g-l~~~  119 (355)
                      ....++++.+.   +..++++..+|.|..++..+++  ...+........ ++      ++.++++++++....| +..+
T Consensus        66 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~s~~~~~l~~~~~d~~i~vw  144 (357)
T 3i2n_A           66 KPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIIN-AIDGIGGLGIGEGAPEIVTGSRDGTVKVW  144 (357)
T ss_dssp             SCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEE-EEEEESGGGCC-CCCEEEEEETTSCEEEE
T ss_pred             CcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceE-EEeeccccccCCCccEEEEEeCCCeEEEE
Confidence            34567778755   4778888999999999987665  233322223344 55      3456777655544444 5556


Q ss_pred             c-CCC---eEEEcCCc----CCcccEE----EccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeec
Q 018474          120 T-EEG---VEAIVPDA----SFTNDVI----AASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE  187 (355)
Q Consensus       120 ~-~~g---~~~~~~~~----~~~~~l~----~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~  187 (355)
                      + .++   +..+....    ..+.+++    +++++++.++...                 .+.+..||..+++......
T Consensus       145 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~-----------------d~~i~i~d~~~~~~~~~~~  207 (357)
T 3i2n_A          145 DPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYD-----------------NGDIKLFDLRNMALRWETN  207 (357)
T ss_dssp             CTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEET-----------------TSEEEEEETTTTEEEEEEE
T ss_pred             eCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEcc-----------------CCeEEEEECccCceeeecC
Confidence            6 332   44443221    3555666    5678876665432                 5689999998887654443


Q ss_pred             cccccccEEEeC---CCCEEEEEeCCCCeEEEEEeCCCC-CcceeEe-cccCCCCcCceEECCCCC-EEEEe
Q 018474          188 GFYFANGIALSK---NEDFVVVCESWKFRCRRYWLKGDR-AGILDAF-IENLPGGPDNINLAPDGS-FWIGL  253 (355)
Q Consensus       188 ~~~~pngi~~~~---dg~~l~v~~~~~~~i~~~~~~~~~-~~~~~~~-~~~~~g~p~~i~~d~~G~-lwv~~  253 (355)
                      .......++++|   +++.++.+ ...+.|..|+++... ....... ..........+.+.++|+ +.++.
T Consensus       208 ~~~~v~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  278 (357)
T 3i2n_A          208 IKNGVCSLEFDRKDISMNKLVAT-SLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTA  278 (357)
T ss_dssp             CSSCEEEEEESCSSSSCCEEEEE-ESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEE
T ss_pred             CCCceEEEEcCCCCCCCCEEEEE-CCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEE
Confidence            344567889999   88866665 456789999885422 1111110 012223345577888887 44444

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=98.39  E-value=0.00017  Score=64.99  Aligned_cols=158  Identities=11%  Similarity=0.098  Sum_probs=102.6

Q ss_pred             EecCCCCCCCceEEEeeC----CCeEEEEecCCEEEEEEcCCCeeE-Eee---c--cCCCcccCeEECCC----CCEEEE
Q 018474           45 KLGEGCVNHPEDVSVVVS----KGALYTATRDGWVKYFILHNETLV-NWK---H--IDSQSLLGLTTTKD----GGVILC  110 (355)
Q Consensus        45 ~~~~~~~~~p~~i~~d~~----~g~l~~~~~~g~i~~~~~~~g~~~-~~~---~--~~~~p~~gl~~d~~----g~L~v~  110 (355)
                      .+..+.-....++++.|.    +..++++..++.|..++..+++.. .+.   .  ....+. .+++.++    |+++++
T Consensus        12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~l~~   90 (366)
T 3k26_A           12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFY-TCAWTYDSNTSHPLLAV   90 (366)
T ss_dssp             EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEE-EEEEEECTTTCCEEEEE
T ss_pred             EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEE-EEEeccCCCCCCCEEEE
Confidence            455555566778889852    455777777889999998765432 221   1  123456 7778766    555444


Q ss_pred             eCCCc-EEEEc-CCC--eEEEcCCcCCcccEEEcc-CCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEe
Q 018474          111 DNEKG-LLKVT-EEG--VEAIVPDASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL  185 (355)
Q Consensus       111 ~~~~g-l~~~~-~~g--~~~~~~~~~~~~~l~~d~-dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~  185 (355)
                      ...+| +..++ .++  +..+......+.++.+.+ ++++.++.+.                 .+.+..||..+++....
T Consensus        91 ~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~-----------------dg~i~iwd~~~~~~~~~  153 (366)
T 3k26_A           91 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSK-----------------DHALRLWNIQTDTLVAI  153 (366)
T ss_dssp             EETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEET-----------------TSCEEEEETTTTEEEEE
T ss_pred             ecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeC-----------------CCeEEEEEeecCeEEEE
Confidence            33444 55666 355  555544446789999999 7877666433                 56788899887765544


Q ss_pred             e----ccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCC
Q 018474          186 H----EGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKG  221 (355)
Q Consensus       186 ~----~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~  221 (355)
                      .    ........++++|+++.++.+. ..+.|..|+++.
T Consensus       154 ~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~  192 (366)
T 3k26_A          154 FGGVEGHRDEVLSADYDLLGEKIMSCG-MDHSLKLWRINS  192 (366)
T ss_dssp             ECSTTSCSSCEEEEEECTTSSEEEEEE-TTSCEEEEESCS
T ss_pred             ecccccccCceeEEEECCCCCEEEEec-CCCCEEEEECCC
Confidence            3    2233457789999999665554 567899999754

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=98.38  E-value=0.00078  Score=60.03  Aligned_cols=187  Identities=14%  Similarity=0.169  Sum_probs=106.0

Q ss_pred             CCCCCCCceEEEeeCC-CeEEEEecCCEEEEEEcCCCee-----E-EeeccCCCcccCeEECCCCCEEEEeCCCcEEE-E
Q 018474           48 EGCVNHPEDVSVVVSK-GALYTATRDGWVKYFILHNETL-----V-NWKHIDSQSLLGLTTTKDGGVILCDNEKGLLK-V  119 (355)
Q Consensus        48 ~~~~~~p~~i~~d~~~-g~l~~~~~~g~i~~~~~~~g~~-----~-~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~-~  119 (355)
                      .|.-..-.+|++.|++ ..|..++.||.|..+|..+++.     . .+......+. .+++.++|++.++...++.++ .
T Consensus        35 ~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~-~~~~s~dg~~l~s~~~d~~i~~~  113 (340)
T 4aow_A           35 KGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVS-DVVISSDGQFALSGSWDGTLRLW  113 (340)
T ss_dssp             CCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEE
T ss_pred             CCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEE-EEEECCCCCEEEEEcccccceEE
Confidence            4555667889998664 4677788899999998755431     1 1111134466 889999998766554555444 4


Q ss_pred             cC-CC--eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecc--cccccc
Q 018474          120 TE-EG--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG--FYFANG  194 (355)
Q Consensus       120 ~~-~g--~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~--~~~png  194 (355)
                      +. .+  .................+++...++.+.                 .+.+..||............  ......
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~-----------------d~~~~~~d~~~~~~~~~~~~~~~~~v~~  176 (340)
T 4aow_A          114 DLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR-----------------DKTIKLWNTLGVCKYTVQDESHSEWVSC  176 (340)
T ss_dssp             ETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEET-----------------TSCEEEECTTSCEEEEECSSSCSSCEEE
T ss_pred             eecccceeeeecCCCCceeEEEEeecCccceeecC-----------------CCeEEEEEeCCCceEEEEeccccCcccc
Confidence            43 33  2222222245555666777755554322                 34566777654433322211  122345


Q ss_pred             EEEeCCCC-EEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474          195 IALSKNED-FVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       195 i~~~~dg~-~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      +++++++. .++++....+.|..+++....  ....+. ...+....+.++++|++.++...
T Consensus       177 ~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~--~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~  235 (340)
T 4aow_A          177 VRFSPNSSNPIIVSCGWDKLVKVWNLANCK--LKTNHI-GHTGYLNTVTVSPDGSLCASGGK  235 (340)
T ss_dssp             EEECSCSSSCEEEEEETTSCEEEEETTTTE--EEEEEC-CCSSCEEEEEECTTSSEEEEEET
T ss_pred             eEEccCCCCcEEEEEcCCCEEEEEECCCCc--eeeEec-CCCCcEEEEEECCCCCEEEEEeC
Confidence            67777654 345555556778888875422  112222 22333455788999987776544

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=98.37  E-value=0.0011  Score=58.94  Aligned_cols=239  Identities=11%  Similarity=0.080  Sum_probs=133.5

Q ss_pred             CCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeecc-CCCcccCeEECCCCCEEEEeCCCc-EEEEcCCC--e
Q 018474           49 GCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI-DSQSLLGLTTTKDGGVILCDNEKG-LLKVTEEG--V  124 (355)
Q Consensus        49 ~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~-~~~p~~gl~~d~~g~L~v~~~~~g-l~~~~~~g--~  124 (355)
                      +.-....++++.+++..++++..++.|..++...+........ ..... .....++++.+++...++ +..++..+  .
T Consensus        84 ~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~  162 (340)
T 4aow_A           84 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVL-SVAFSSDNRQIVSGSRDKTIKLWNTLGVCK  162 (340)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE-EEEECTTSSCEEEEETTSCEEEECTTSCEE
T ss_pred             CCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCcee-EEEEeecCccceeecCCCeEEEEEeCCCce
Confidence            3345567888987777788889999999999876655433322 23344 556666776554433444 44445333  2


Q ss_pred             EEEcCC--cCCcccEEEccCC--cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecc-ccccccEEEeC
Q 018474          125 EAIVPD--ASFTNDVIAASDG--TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG-FYFANGIALSK  199 (355)
Q Consensus       125 ~~~~~~--~~~~~~l~~d~dG--~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~-~~~pngi~~~~  199 (355)
                      ......  ...+..+.+.+++  .+.++.+.                 .+.+..||..+++......+ ....+.++++|
T Consensus       163 ~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~-----------------d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~  225 (340)
T 4aow_A          163 YTVQDESHSEWVSCVRFSPNSSNPIIVSCGW-----------------DKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP  225 (340)
T ss_dssp             EEECSSSCSSCEEEEEECSCSSSCEEEEEET-----------------TSCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred             EEEEeccccCcccceEEccCCCCcEEEEEcC-----------------CCEEEEEECCCCceeeEecCCCCcEEEEEECC
Confidence            222211  2456667776654  34444322                 45678888877765444332 23346789999


Q ss_pred             CCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccc
Q 018474          200 NEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPG  279 (355)
Q Consensus       200 dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (355)
                      |++.++. ....+.|..|++....  ....+.  .......+.+.+++.+..+...                        
T Consensus       226 ~~~~l~s-~s~Dg~i~iwd~~~~~--~~~~~~--~~~~v~~~~~~~~~~~~~~~~d------------------------  276 (340)
T 4aow_A          226 DGSLCAS-GGKDGQAMLWDLNEGK--HLYTLD--GGDIINALCFSPNRYWLCAATG------------------------  276 (340)
T ss_dssp             TSSEEEE-EETTCEEEEEETTTTE--EEEEEE--CSSCEEEEEECSSSSEEEEEET------------------------
T ss_pred             CCCEEEE-EeCCCeEEEEEeccCc--eeeeec--CCceEEeeecCCCCceeeccCC------------------------
Confidence            9995554 4456789889875421  122121  1122344667777777666544                        


Q ss_pred             hhhcccCCCCCCceEEEEEeCCCCeEEEEEECCC-----CCcccceeEEEEeC-CEEEEeecCCCeEEEeeCCC
Q 018474          280 LISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPD-----ATYISFVTSAAEFD-GNLYLASLQSNFIGILPLDG  347 (355)
Q Consensus       280 ~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~-----g~~~~~~~~~~~~~-g~L~v~~~~~~~i~~~~~~~  347 (355)
                                   +.|..+|.+.+.....+..+.     ......++.+.... +++.++......|...++.+
T Consensus       277 -------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~t  337 (340)
T 4aow_A          277 -------------PSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTI  337 (340)
T ss_dssp             -------------TEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred             -------------CEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC
Confidence                         346666763444444443211     01123456666543 44444444466777777643

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.37  E-value=5.2e-05  Score=75.05  Aligned_cols=153  Identities=14%  Similarity=0.122  Sum_probs=98.9

Q ss_pred             CCceEEEeeCCCeEEEEecC----------CEEEEEEcCC------CeeEEee-ccCCCcccCeEECCCCC-EEEEeCC-
Q 018474           53 HPEDVSVVVSKGALYTATRD----------GWVKYFILHN------ETLVNWK-HIDSQSLLGLTTTKDGG-VILCDNE-  113 (355)
Q Consensus        53 ~p~~i~~d~~~g~l~~~~~~----------g~i~~~~~~~------g~~~~~~-~~~~~p~~gl~~d~~g~-L~v~~~~-  113 (355)
                      ...++++.|++..|+.+..+          ..|++++..+      ++.+.+. ....... ++++.+||+ |+++... 
T Consensus       131 ~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~SpDG~~la~~~~~~  209 (662)
T 3azo_A          131 RWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVT-GPRLSPDGRQAVWLAWDH  209 (662)
T ss_dssp             EEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEEC-CCEECTTSSEEEEEEECT
T ss_pred             cccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCccc-CceECCCCCEEEEEECCC
Confidence            35678888777778776654          5789999977      6666654 3334556 788999997 5444422 


Q ss_pred             -------CcEEEEc-C-CC----eEEEcCC-cCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCC
Q 018474          114 -------KGLLKVT-E-EG----VEAIVPD-ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKL  179 (355)
Q Consensus       114 -------~gl~~~~-~-~g----~~~~~~~-~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~  179 (355)
                             ..|+.++ . +|    .+.+... ...+.++.+++||++|++...               .....|+++|+++
T Consensus       210 ~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~---------------~~~~~l~~~~~~~  274 (662)
T 3azo_A          210 PRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDR---------------TGWWNLHRVDPAT  274 (662)
T ss_dssp             TCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECT---------------TSSCEEEEECTTT
T ss_pred             CCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECC---------------CCCeEEEEEECCC
Confidence                   2477777 4 34    2233322 256778899999998876543               1123799999888


Q ss_pred             CeEEEeecccc-c--------cccEEEeCCCCEEEEEeCCCCeEEEEEeCC
Q 018474          180 KETTVLHEGFY-F--------ANGIALSKNEDFVVVCESWKFRCRRYWLKG  221 (355)
Q Consensus       180 ~~~~~~~~~~~-~--------pngi~~~~dg~~l~v~~~~~~~i~~~~~~~  221 (355)
                      ++.+.+..... .        ...++++++++.++.+.....+|++++.++
T Consensus       275 ~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~  325 (662)
T 3azo_A          275 GAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPES  325 (662)
T ss_dssp             CCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTT
T ss_pred             CceeecccccccccCccccccCceEeEeCCCEEEEEEEcCccEEEEEECCC
Confidence            87766543211 1        246888899986555544445677777654

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.36  E-value=0.00016  Score=75.79  Aligned_cols=145  Identities=10%  Similarity=0.124  Sum_probs=92.9

Q ss_pred             ceEEEeeCCCeEEEEecCCEEE-EEEcCCCeeEEeeccCCCcccCeEECCCCCE-EEEeCCCcEEEEc-CCC-eEEEc-C
Q 018474           55 EDVSVVVSKGALYTATRDGWVK-YFILHNETLVNWKHIDSQSLLGLTTTKDGGV-ILCDNEKGLLKVT-EEG-VEAIV-P  129 (355)
Q Consensus        55 ~~i~~d~~~g~l~~~~~~g~i~-~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L-~v~~~~~gl~~~~-~~g-~~~~~-~  129 (355)
                      .++++. ++..++.++.++.++ .++..+++...+......+. .+++.++|+. +++...+.++.++ .+| .+.+. .
T Consensus       341 ~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~-~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~  418 (1045)
T 1k32_A          341 VRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVF-AMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS  418 (1045)
T ss_dssp             EEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEE-EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             EeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCcccee-eeEECCCCCEEEEECCCCeEEEEECCCCceEEeccC
Confidence            345555 455666666677888 88887777666543234567 8899999974 4455445688888 466 54443 3


Q ss_pred             CcCCcccEEEccCCcEE-EEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEe
Q 018474          130 DASFTNDVIAASDGTLY-FTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCE  208 (355)
Q Consensus       130 ~~~~~~~l~~d~dG~ly-~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~  208 (355)
                      ....+.+++++|||+.. ++.....+     ..   .......++.||.++++...+.........++++|||+.+++..
T Consensus       419 ~~~~v~~~~~SpDG~~la~~~~~~~~-----~~---~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s  490 (1045)
T 1k32_A          419 REAMITDFTISDNSRFIAYGFPLKHG-----ET---DGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLS  490 (1045)
T ss_dssp             SSSCCCCEEECTTSCEEEEEEEECSS-----TT---CSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEE
T ss_pred             CCCCccceEECCCCCeEEEEecCccc-----cc---cCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEe
Confidence            33556889999999643 33221000     00   00113479999998888665554444566789999999888876


Q ss_pred             C
Q 018474          209 S  209 (355)
Q Consensus       209 ~  209 (355)
                      .
T Consensus       491 ~  491 (1045)
T 1k32_A          491 Y  491 (1045)
T ss_dssp             S
T ss_pred             c
Confidence            4

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=98.35  E-value=0.00027  Score=62.75  Aligned_cols=189  Identities=16%  Similarity=0.120  Sum_probs=104.7

Q ss_pred             ecCCCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCe----e-EEeeccCCCcccCeEECC--CCCEEEEeCCCc-EE
Q 018474           46 LGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNET----L-VNWKHIDSQSLLGLTTTK--DGGVILCDNEKG-LL  117 (355)
Q Consensus        46 ~~~~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~----~-~~~~~~~~~p~~gl~~d~--~g~L~v~~~~~g-l~  117 (355)
                      +..+.-..-.++++.+++..|++++.+|.|..++..++.    . ..+......+. ++++.+  +++++++...+| +.
T Consensus         6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~d~~~l~s~~~dg~v~   84 (351)
T 3f3f_A            6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIV-AIDWASPEYGRIIASASYDKTVK   84 (351)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEE-EEEECCGGGCSEEEEEETTSCEE
T ss_pred             cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEE-EEEEcCCCCCCEEEEEcCCCeEE
Confidence            334555667889999777778888999999999986552    2 12222234566 888887  477655544444 44


Q ss_pred             EEc-CCC-----------eEEEcCCcCCcccEEEccC--CcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEE
Q 018474          118 KVT-EEG-----------VEAIVPDASFTNDVIAASD--GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT  183 (355)
Q Consensus       118 ~~~-~~g-----------~~~~~~~~~~~~~l~~d~d--G~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~  183 (355)
                      .++ .++           ...+......+.+++++++  +.+.++...                 .+.+..||..+++..
T Consensus        85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-----------------dg~v~iwd~~~~~~~  147 (351)
T 3f3f_A           85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGN-----------------DGILRLYDALEPSDL  147 (351)
T ss_dssp             EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET-----------------TCEEEEEECSSTTCT
T ss_pred             EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecC-----------------CCcEEEecCCChHHh
Confidence            455 232           2223223367888999998  876655332                 456777776554311


Q ss_pred             ----E--ee--------ccccccccEEEeCC---CCEEEEEeCCCCeEEEEEe-CCCCCcceeEecccCCCCcCceEECC
Q 018474          184 ----V--LH--------EGFYFANGIALSKN---EDFVVVCESWKFRCRRYWL-KGDRAGILDAFIENLPGGPDNINLAP  245 (355)
Q Consensus       184 ----~--~~--------~~~~~pngi~~~~d---g~~l~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~g~p~~i~~d~  245 (355)
                          .  ..        ........++++|+   ++.+.++. ..+.+ .++. ..........+. ...+....+.+.+
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~~~-~~~~~~~~~~~~~~~~~-~h~~~i~~~~~~p  224 (351)
T 3f3f_A          148 RSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSA-LEQAI-IYQRGKDGKLHVAAKLP-GHKSLIRSISWAP  224 (351)
T ss_dssp             TCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEE-TTEEE-EEEECTTSCEEEEEECC-CCCSCEEEEEECC
T ss_pred             ccccccccccccccccCCcccceeEEEeccCCCCCcEEEEec-CCCcE-EEEccCCCceeeeeecC-CCCcceeEEEECC
Confidence                0  00        11223457888887   77555554 34445 4443 222111111111 2222344567777


Q ss_pred             CC----CEEEEeec
Q 018474          246 DG----SFWIGLIK  255 (355)
Q Consensus       246 ~G----~lwv~~~~  255 (355)
                      +|    ++.++...
T Consensus       225 ~~~~~~~~l~s~~~  238 (351)
T 3f3f_A          225 SIGRWYQLIATGCK  238 (351)
T ss_dssp             CSSCSSEEEEEEET
T ss_pred             CCCCcceEEEEEcC
Confidence            76    45554443

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=98.35  E-value=0.00065  Score=59.91  Aligned_cols=236  Identities=11%  Similarity=0.008  Sum_probs=133.1

Q ss_pred             CceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEE-c-CCC---eEEEc
Q 018474           54 PEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKV-T-EEG---VEAIV  128 (355)
Q Consensus        54 p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~-~-~~g---~~~~~  128 (355)
                      -.++++.+++..+.+++.+|.|..++..+++....... .... ...+..++.+.++....+..++ + ..+   +..+.
T Consensus        70 V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~-h~~~-~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~  147 (318)
T 4ggc_A           70 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTS-HSAR-VGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLS  147 (318)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-CSSC-EEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecC-ccce-EEEeecCCCEEEEEecCCceEeeecCCCceeEEEEc
Confidence            45788997777788899999999999988876543322 1111 2233344555554444454444 3 233   34444


Q ss_pred             CCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEE-----EeeccccccccEEEeCCCCE
Q 018474          129 PDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT-----VLHEGFYFANGIALSKNEDF  203 (355)
Q Consensus       129 ~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~-----~~~~~~~~pngi~~~~dg~~  203 (355)
                      .....+..+...++|+..++...                 .+.+..||..+++..     ...........+++++++..
T Consensus       148 ~~~~~~~~~~~~~~~~~l~s~~~-----------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  210 (318)
T 4ggc_A          148 GHSQEVCGLRWAPDGRHLASGGN-----------------DNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSN  210 (318)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEET-----------------TSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTT
T ss_pred             CccCceEEEEEcCCCCEEEEEec-----------------CcceeEEECCCCcccccceeeecccCCceEEEEecCCCCc
Confidence            33356777888888876665433                 456777776654311     11111122345667776654


Q ss_pred             EEEE--eCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchh
Q 018474          204 VVVC--ESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLI  281 (355)
Q Consensus       204 l~v~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (355)
                      ++..  ....+.|..++......  ....  ........+.+.++++..+...+                          
T Consensus       211 ~~~~~~~~~~~~i~lwd~~~~~~--~~~~--~~~~~v~~~~~~~~~~~~~~~sg--------------------------  260 (318)
T 4ggc_A          211 VLATGGGTSDRHIRIWNVCSGAC--LSAV--DAHSQVCSILWSPHYKELISGHG--------------------------  260 (318)
T ss_dssp             EEEEEECTTTCEEEEEETTTCCE--EEEE--ECSSCEEEEEEETTTTEEEEEEC--------------------------
T ss_pred             EEEEEecCCCCEEEEEecccccc--cccc--cceeeeeeeeecccccceEEEEE--------------------------
Confidence            4432  33345566666543211  1111  11112334556677765554432                          


Q ss_pred             hcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEe-CCEEEEeecCCCeEEEeeCCCCCC
Q 018474          282 SLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-DGNLYLASLQSNFIGILPLDGPEP  350 (355)
Q Consensus       282 ~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~~~~~~~  350 (355)
                              ...+.|..+|..+++.+..+..+.+    .++.+... ++++.++......|...++....|
T Consensus       261 --------~~d~~i~iwd~~~~~~~~~l~gH~~----~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~dP  318 (318)
T 4ggc_A          261 --------FAQNQLVIWKYPTMAKVAELKGHTS----RVLSLTMSPDGATVASAAADETLRLWRCFELDP  318 (318)
T ss_dssp             --------TTTCCEEEEETTTCCEEEEECCCSS----CEEEEEECTTSSCEEEEETTTEEEEECCSCCCC
T ss_pred             --------cCCCEEEEEECCCCcEEEEEcCCCC----CEEEEEEcCCCCEEEEEecCCeEEEEECCCCCC
Confidence                    1124577788768888888876554    46667665 355555555577888888876554

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.34  E-value=1.1e-05  Score=78.83  Aligned_cols=174  Identities=12%  Similarity=0.070  Sum_probs=107.4

Q ss_pred             CCceEEEeeCCC-eEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEe-CC----CcEEEEc-CCC-e
Q 018474           53 HPEDVSVVVSKG-ALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCD-NE----KGLLKVT-EEG-V  124 (355)
Q Consensus        53 ~p~~i~~d~~~g-~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~-~~----~gl~~~~-~~g-~  124 (355)
                      +....++.++++ .+|++..++.+..+|.++++.+.+.....  . .+++++||+.++.. ..    ..|+.++ .+| .
T Consensus       111 ~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~-~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~  187 (582)
T 3o4h_A          111 PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--F-GFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL  187 (582)
T ss_dssp             SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--C-EEEEEEETTEEEEEEEEETTEEEEEEEETTTCCC
T ss_pred             CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--c-eEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCc
Confidence            344556665554 45665555666788888888776654322  5 78899999876632 22    2478888 466 7


Q ss_pred             EEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecc-ccccccEE-------
Q 018474          125 EAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG-FYFANGIA-------  196 (355)
Q Consensus       125 ~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~-~~~pngi~-------  196 (355)
                      +.+.......++++++|||+..++...               .....|+++|.++++.+ ...+ ......++       
T Consensus       188 ~~l~~~~~~~~~~~~SpDG~~l~~~~~---------------~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~  251 (582)
T 3o4h_A          188 RVFDSGEGSFSSASISPGMKVTAGLET---------------AREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWL  251 (582)
T ss_dssp             EEECCSSCEEEEEEECTTSCEEEEEEC---------------SSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEE
T ss_pred             eEeecCCCccccceECCCCCEEEEccC---------------CCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccce
Confidence            666655456788999999964443222               11237999999988877 4332 22234455       


Q ss_pred             -EeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474          197 -LSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       197 -~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                       ++|||+ ++++....+.+..|.+ |.    ...   ...+....+.++ +|++++....
T Consensus       252 ~~spdg~-~~~~~~~~g~~~l~~~-g~----~~~---~~~~~v~~~~~s-dg~~l~~~s~  301 (582)
T 3o4h_A          252 GYLPDGR-LAVVARREGRSAVFID-GE----RVE---APQGNHGRVVLW-RGKLVTSHTS  301 (582)
T ss_dssp             EECTTSC-EEEEEEETTEEEEEET-TE----EEC---CCSSEEEEEEEE-TTEEEEEEEE
T ss_pred             eEcCCCc-EEEEEEcCCcEEEEEE-CC----eec---cCCCceEEEEec-CCEEEEEEcC
Confidence             999995 7777666777777776 31    111   111223456677 7876655443

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=98.33  E-value=0.00013  Score=65.86  Aligned_cols=100  Identities=9%  Similarity=0.021  Sum_probs=64.1

Q ss_pred             CCCCCCCceEEEeeCC---CeEEEEecCCEEEEEEcCC-CeeE--EeeccCCCcccCeEECCCCCEEEEeCCCc-EEEEc
Q 018474           48 EGCVNHPEDVSVVVSK---GALYTATRDGWVKYFILHN-ETLV--NWKHIDSQSLLGLTTTKDGGVILCDNEKG-LLKVT  120 (355)
Q Consensus        48 ~~~~~~p~~i~~d~~~---g~l~~~~~~g~i~~~~~~~-g~~~--~~~~~~~~p~~gl~~d~~g~L~v~~~~~g-l~~~~  120 (355)
                      .+.-..-.++++.+++   ..|++++.+|.|..++..+ +...  .+......+. .+++.++++++++...+| +..++
T Consensus        36 ~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~~~dg~v~iwd  114 (368)
T 3mmy_A           36 SSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVL-DVCWSDDGSKVFTASCDKTAKMWD  114 (368)
T ss_dssp             SCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEE-EEEECTTSSEEEEEETTSEEEEEE
T ss_pred             cCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEE-EEEECcCCCEEEEEcCCCcEEEEE
Confidence            3445667889999663   6677888899999999876 4332  2322345577 899999987655544445 55556


Q ss_pred             -CCC-eEEEcCCcCCcccEEE--ccCCcEEEE
Q 018474          121 -EEG-VEAIVPDASFTNDVIA--ASDGTLYFT  148 (355)
Q Consensus       121 -~~g-~~~~~~~~~~~~~l~~--d~dG~ly~~  148 (355)
                       .++ ...+......+.++.+  +++|++.++
T Consensus       115 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~  146 (368)
T 3mmy_A          115 LSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMT  146 (368)
T ss_dssp             TTTTEEEEEEECSSCEEEEEEEECSSCEEEEE
T ss_pred             cCCCCceeeccccCceEEEEEEeCCCCCEEEE
Confidence             355 3333333356777877  777765544

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=98.33  E-value=0.0012  Score=59.57  Aligned_cols=184  Identities=13%  Similarity=0.105  Sum_probs=108.4

Q ss_pred             CCCCCCceEEE-----ee-CCCeEEEEecCCEEEEEEcCCCe-------eE-EeeccCCCcccCeEECCCCCEEEEeCCC
Q 018474           49 GCVNHPEDVSV-----VV-SKGALYTATRDGWVKYFILHNET-------LV-NWKHIDSQSLLGLTTTKDGGVILCDNEK  114 (355)
Q Consensus        49 ~~~~~p~~i~~-----d~-~~g~l~~~~~~g~i~~~~~~~g~-------~~-~~~~~~~~p~~gl~~d~~g~L~v~~~~~  114 (355)
                      |.-..-.++++     .+ ++..|..++.|+.|..++..+++       .. .+......+. .+++.+++.+.++...+
T Consensus        19 gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~-~~~~~~~~~~l~s~s~D   97 (343)
T 2xzm_R           19 GHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVS-DLALSQENCFAISSSWD   97 (343)
T ss_dssp             CCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEE-EEEECSSTTEEEEEETT
T ss_pred             cchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceE-EEEECCCCCEEEEEcCC
Confidence            43344466776     43 45667788889999999875432       11 1111123456 78999999877665555


Q ss_pred             cEEEE-c-CCC--eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeec---
Q 018474          115 GLLKV-T-EEG--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE---  187 (355)
Q Consensus       115 gl~~~-~-~~g--~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~---  187 (355)
                      +.+++ + .++  +..+......+.+++++++|+..++.+.                 .+.+..||..+........   
T Consensus        98 ~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~-----------------d~~i~~wd~~~~~~~~~~~~~~  160 (343)
T 2xzm_R           98 KTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGA-----------------EREIKLWNILGECKFSSAEKEN  160 (343)
T ss_dssp             SEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEET-----------------TSCEEEEESSSCEEEECCTTTS
T ss_pred             CcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcC-----------------CCEEEEEeccCCceeeeecccC
Confidence            65544 5 455  5555544467889999999976665433                 4567777765433322221   


Q ss_pred             cccccccEEEeCCC----------CEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474          188 GFYFANGIALSKNE----------DFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       188 ~~~~pngi~~~~dg----------~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      .......++++|++          . .+++....+.|..|+.+.   .....+. ...+....+.++++|++.++...
T Consensus       161 ~~~~v~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~---~~~~~~~-~h~~~v~~~~~s~~g~~l~sgs~  233 (343)
T 2xzm_R          161 HSDWVSCVRYSPIMKSANKVQPFAP-YFASVGWDGRLKVWNTNF---QIRYTFK-AHESNVNHLSISPNGKYIATGGK  233 (343)
T ss_dssp             CSSCEEEEEECCCCCSCSCCCSSCC-EEEEEETTSEEEEEETTT---EEEEEEE-CCSSCEEEEEECTTSSEEEEEET
T ss_pred             CCceeeeeeeccccccccccCCCCC-EEEEEcCCCEEEEEcCCC---ceeEEEc-CccccceEEEECCCCCEEEEEcC
Confidence            11223457777776          4 445555677888888422   1112222 22333456788999987766544

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=98.33  E-value=0.00011  Score=67.37  Aligned_cols=157  Identities=9%  Similarity=-0.005  Sum_probs=96.5

Q ss_pred             ecCCCCCCCceEEEee-CCCeEEEEecCCEEEEEEcCCCeeEEeec--------------cCCCcccCeEECC-CCCEEE
Q 018474           46 LGEGCVNHPEDVSVVV-SKGALYTATRDGWVKYFILHNETLVNWKH--------------IDSQSLLGLTTTK-DGGVIL  109 (355)
Q Consensus        46 ~~~~~~~~p~~i~~d~-~~g~l~~~~~~g~i~~~~~~~g~~~~~~~--------------~~~~p~~gl~~d~-~g~L~v  109 (355)
                      +..+.-..-.++++.+ ++..|++++.+|.|..++..+++......              ....+. .+++.+ ++++++
T Consensus        38 ~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~  116 (408)
T 4a11_B           38 VERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVE-TVQWYPHDTGMFT  116 (408)
T ss_dssp             ECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEE-EEEECTTCTTCEE
T ss_pred             eeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEE-EEEEccCCCcEEE
Confidence            3344445668899997 67778888899999999987664321111              223456 788887 555554


Q ss_pred             EeCCCc-EEEEc-CCC--eEEEcCCcCCcccEEEcc---CCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeE
Q 018474          110 CDNEKG-LLKVT-EEG--VEAIVPDASFTNDVIAAS---DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKET  182 (355)
Q Consensus       110 ~~~~~g-l~~~~-~~g--~~~~~~~~~~~~~l~~d~---dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~  182 (355)
                      +....| +..++ .++  ...+.. ...+..+.+.+   ++.+.++...                 .+.+..||..+++.
T Consensus       117 s~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~v~~~d~~~~~~  178 (408)
T 4a11_B          117 SSSFDKTLKVWDTNTLQTADVFNF-EETVYSHHMSPVSTKHCLVAVGTR-----------------GPKVQLCDLKSGSC  178 (408)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEEC-SSCEEEEEECSSCSSCCEEEEEES-----------------SSSEEEEESSSSCC
T ss_pred             EEeCCCeEEEeeCCCCccceeccC-CCceeeeEeecCCCCCcEEEEEcC-----------------CCeEEEEeCCCcce
Confidence            443444 55556 355  333322 24556666665   3335444322                 45788888776653


Q ss_pred             EEeec-cccccccEEEeCCCCEEEEEeCCCCeEEEEEeCC
Q 018474          183 TVLHE-GFYFANGIALSKNEDFVVVCESWKFRCRRYWLKG  221 (355)
Q Consensus       183 ~~~~~-~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~  221 (355)
                      ..... .......++++|+++.++++....+.|..|+++.
T Consensus       179 ~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~  218 (408)
T 4a11_B          179 SHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRR  218 (408)
T ss_dssp             CEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTC
T ss_pred             eeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCC
Confidence            32222 2334567899999986666666678899999854

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=98.33  E-value=0.00044  Score=64.49  Aligned_cols=246  Identities=10%  Similarity=0.105  Sum_probs=140.0

Q ss_pred             EecCCCCCCCceEEEee-CCCeEEEEecCCEEEEEEcCC---Ce----eEEeeccCCCcccCeEECCCCCEEEEeCCCc-
Q 018474           45 KLGEGCVNHPEDVSVVV-SKGALYTATRDGWVKYFILHN---ET----LVNWKHIDSQSLLGLTTTKDGGVILCDNEKG-  115 (355)
Q Consensus        45 ~~~~~~~~~p~~i~~d~-~~g~l~~~~~~g~i~~~~~~~---g~----~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~g-  115 (355)
                      .+..+.-..-.++++.+ ++..|.+++.+|.|..++..+   +.    ...+ .....+. ++++.++++++++...+| 
T Consensus        57 ~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~-~~~~~~~~~~l~s~s~dg~  134 (437)
T 3gre_A           57 TLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVT-QITMIPNFDAFAVSSKDGQ  134 (437)
T ss_dssp             EECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEE-EEEECTTSSEEEEEETTSE
T ss_pred             eeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEE-EEEEeCCCCEEEEEeCCCE
Confidence            34344446678999997 567788888999999999754   32    1122 2234567 899998887655544445 


Q ss_pred             EEEEcC----CC--eEEEcCC------------cCCcccEE--EccCCcEEEEeCCCCCCCccccccccccCCCCeEEEE
Q 018474          116 LLKVTE----EG--VEAIVPD------------ASFTNDVI--AASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKY  175 (355)
Q Consensus       116 l~~~~~----~g--~~~~~~~------------~~~~~~l~--~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~  175 (355)
                      +..++.    ++  .+.....            ...+..+.  ..+++.+.++.                 ...+.+..|
T Consensus       135 i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------------~~d~~i~iw  197 (437)
T 3gre_A          135 IIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVAL-----------------TNLSRVIIF  197 (437)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEE-----------------ETTSEEEEE
T ss_pred             EEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEE-----------------eCCCeEEEE
Confidence            333331    33  2211111            01122222  33455544443                 225789999


Q ss_pred             eCCCCeEEEeecc---ccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCce----EECCCCC
Q 018474          176 DPKLKETTVLHEG---FYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNI----NLAPDGS  248 (355)
Q Consensus       176 dp~~~~~~~~~~~---~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i----~~d~~G~  248 (355)
                      |..+++.......   ......++++|+++.++.+ ...+.|..|+++...  ....+.-........+    .++++|.
T Consensus       198 d~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~-~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~s~~~~  274 (437)
T 3gre_A          198 DIRTLERLQIIENSPRHGAVSSICIDEECCVLILG-TTRGIIDIWDIRFNV--LIRSWSFGDHAPITHVEVCQFYGKNSV  274 (437)
T ss_dssp             ETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEE-ETTSCEEEEETTTTE--EEEEEBCTTCEEEEEEEECTTTCTTEE
T ss_pred             eCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEE-cCCCeEEEEEcCCcc--EEEEEecCCCCceEEEEeccccCCCcc
Confidence            9877765433322   3456789999999865555 456789999975421  1111110111112234    2335565


Q ss_pred             EEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCC-------------
Q 018474          249 FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDAT-------------  315 (355)
Q Consensus       249 lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~-------------  315 (355)
                      +.++...                                    .+.|..+|..+++....+....+.             
T Consensus       275 ~l~s~~~------------------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  318 (437)
T 3gre_A          275 IVVGGSS------------------------------------KTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGL  318 (437)
T ss_dssp             EEEEEST------------------------------------TEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSG
T ss_pred             EEEEEcC------------------------------------CCcEEEEEcCCCcEEEEEEcCCCCCccceeccccccc
Confidence            5554432                                    245777787568877777654321             


Q ss_pred             ---------cccceeEEEEeCCEEEEeecCCCeEEEeeCCCC
Q 018474          316 ---------YISFVTSAAEFDGNLYLASLQSNFIGILPLDGP  348 (355)
Q Consensus       316 ---------~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~~~  348 (355)
                               ....++.+...++++.++.-....|...++...
T Consensus       319 ~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~  360 (437)
T 3gre_A          319 EELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNEL  360 (437)
T ss_dssp             GGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCG
T ss_pred             ccceecccccCCceEEEEECCceEEEecCCCCeEEEEECCCc
Confidence                     122355566667776676666888998887654

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=98.31  E-value=2.4e-05  Score=72.26  Aligned_cols=184  Identities=11%  Similarity=0.025  Sum_probs=107.4

Q ss_pred             CCCceEEEeeCCC-eEEEE----------ecCCEEEEEEcCCCeeE---EeeccCCCcccCeEECCCCCEEEE-eCCCcE
Q 018474           52 NHPEDVSVVVSKG-ALYTA----------TRDGWVKYFILHNETLV---NWKHIDSQSLLGLTTTKDGGVILC-DNEKGL  116 (355)
Q Consensus        52 ~~p~~i~~d~~~g-~l~~~----------~~~g~i~~~~~~~g~~~---~~~~~~~~p~~gl~~d~~g~L~v~-~~~~gl  116 (355)
                      ....++++.|++. .++++          ..++.|..++..+++..   ........+. .+++.++|+++++ ...+.+
T Consensus        13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~v   91 (416)
T 2pm9_A           13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFN-DLDWSHNNKIIAGALDNGSL   91 (416)
T ss_dssp             EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEE-EEEECSSSSCEEEEESSSCE
T ss_pred             hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceE-EEEECCCCCeEEEEccCCeE
Confidence            3455677875554 56666          56788999998766421   1112234566 8999988875554 433445


Q ss_pred             EEEc-CC---C---eEEEcCCcCCcccEEEccC-CcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCe------E
Q 018474          117 LKVT-EE---G---VEAIVPDASFTNDVIAASD-GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE------T  182 (355)
Q Consensus       117 ~~~~-~~---g---~~~~~~~~~~~~~l~~d~d-G~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~------~  182 (355)
                      ..++ .+   +   ...+......+.+++++++ ++++++.+.                 .+.+..||..+++      .
T Consensus        92 ~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-----------------dg~v~iwd~~~~~~~~~~~~  154 (416)
T 2pm9_A           92 ELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGN-----------------NGEIFIWDMNKCTESPSNYT  154 (416)
T ss_dssp             EEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECS-----------------SSCEEBCBTTTTSSCTTTCC
T ss_pred             EEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcC-----------------CCeEEEEECCCCcccccccc
Confidence            5555 33   2   3333333367889999998 676666433                 4567777776654      1


Q ss_pred             EEe----eccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccC-----CCCcCceEECCCC-CEEEE
Q 018474          183 TVL----HEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENL-----PGGPDNINLAPDG-SFWIG  252 (355)
Q Consensus       183 ~~~----~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~-----~g~p~~i~~d~~G-~lwv~  252 (355)
                      ...    .........+++++++..++++....+.|..|+++..+  ....+....     ......+.++++| +++++
T Consensus       155 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  232 (416)
T 2pm9_A          155 PLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKK--EVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVAT  232 (416)
T ss_dssp             CBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTE--EEEEECCCCCSSCCCCCEEEEEECSSCTTEEEE
T ss_pred             ccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCC--cceEEeccccccccCCceEEEEECCCCCCEEEE
Confidence            111    11223456899999944366666667889999985432  111221110     2234557788887 45555


Q ss_pred             eec
Q 018474          253 LIK  255 (355)
Q Consensus       253 ~~~  255 (355)
                      ...
T Consensus       233 ~~~  235 (416)
T 2pm9_A          233 ATG  235 (416)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            443

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=98.28  E-value=0.00077  Score=67.49  Aligned_cols=186  Identities=8%  Similarity=0.024  Sum_probs=104.7

Q ss_pred             ceEEEeeCCCeEEEEec-CC----EEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCCCc-------------
Q 018474           55 EDVSVVVSKGALYTATR-DG----WVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEKG-------------  115 (355)
Q Consensus        55 ~~i~~d~~~g~l~~~~~-~g----~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~~g-------------  115 (355)
                      .++++.|++..|..+.. +|    .|+.+|..+|+............ ++++.+||+ |+++.....             
T Consensus       128 ~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~-~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~  206 (710)
T 2xdw_A          128 RGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFS-CMAWTHDGKGMFYNAYPQQDGKSDGTETSTNL  206 (710)
T ss_dssp             EEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSC-CEEECTTSSEEEEEECCCCSSCCSSSCCCCCC
T ss_pred             EEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccc-eEEEEeCCCEEEEEEECCccccccccccccCC
Confidence            46778866666655443 33    79999998888765322222345 789998986 666554333             


Q ss_pred             ---EEEEcC-CC-e--EEEcCC---cCCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCC-----
Q 018474          116 ---LLKVTE-EG-V--EAIVPD---ASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKL-----  179 (355)
Q Consensus       116 ---l~~~~~-~g-~--~~~~~~---~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~-----  179 (355)
                         +++++. ++ .  ..+...   ..+..++.+++||+ |.++....             ......++.+|.++     
T Consensus       207 ~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~-------------~~~~~~l~~~d~~~~~~~~  273 (710)
T 2xdw_A          207 HQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREG-------------CDPVNRLWYCDLQQESNGI  273 (710)
T ss_dssp             CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECS-------------SSSCCEEEEEEGGGSSSSS
T ss_pred             CCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEcc-------------CCCccEEEEEECccccccc
Confidence               777763 43 1  233222   13456788999995 55543210             01134688888765     


Q ss_pred             -C--eEEEeeccccccccEEEeCCCCEEEEEeCC---CCeEEEEEeCCCCCcceeEecccCC-CCcCceEECCCCCEEEE
Q 018474          180 -K--ETTVLHEGFYFANGIALSKNEDFVVVCESW---KFRCRRYWLKGDRAGILDAFIENLP-GGPDNINLAPDGSFWIG  252 (355)
Q Consensus       180 -~--~~~~~~~~~~~pngi~~~~dg~~l~v~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~-g~p~~i~~d~~G~lwv~  252 (355)
                       +  +.+.+..... ...-.+++||+.+|+....   ..+|+++++++......+.+..... ....++...+++.++++
T Consensus       274 ~~~~~~~~l~~~~~-~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~  352 (710)
T 2xdw_A          274 TGILKWVKLIDNFE-GEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLC  352 (710)
T ss_dssp             CSSCCCEEEECSSS-SCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEE
T ss_pred             CCccceEEeeCCCC-cEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEE
Confidence             4  3444443322 2223588999988887643   3479999986543222333432222 12334555545666665


Q ss_pred             eec
Q 018474          253 LIK  255 (355)
Q Consensus       253 ~~~  255 (355)
                      ...
T Consensus       353 ~~~  355 (710)
T 2xdw_A          353 YLH  355 (710)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=98.28  E-value=0.00024  Score=65.29  Aligned_cols=186  Identities=9%  Similarity=0.040  Sum_probs=116.6

Q ss_pred             CCCCCceEEEeeCCCeEEEEecC----------------CEEEEEEcCCC--eeE-Eeecc------CCCcccCeEEC-C
Q 018474           50 CVNHPEDVSVVVSKGALYTATRD----------------GWVKYFILHNE--TLV-NWKHI------DSQSLLGLTTT-K  103 (355)
Q Consensus        50 ~~~~p~~i~~d~~~g~l~~~~~~----------------g~i~~~~~~~g--~~~-~~~~~------~~~p~~gl~~d-~  103 (355)
                      .+...-.+.+| ..++||+-...                -+|+.+|.+++  +.. ++...      ..... .+++| .
T Consensus        85 ~lvsV~~v~iD-~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~-di~VD~~  162 (381)
T 3q6k_A           85 ELTSIYQPVID-DCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFG-GFAVDVA  162 (381)
T ss_dssp             SSSCEEEEEEC-TTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEE-EEEEEES
T ss_pred             ceEEeeEEEEc-CCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccc-eEEEecc
Confidence            36778889999 68889974321                26889999988  654 33211      12244 67888 2


Q ss_pred             -------CCCEEEEeCC-CcEEEEc-CCC--eEEEcCC----c--------------CCcccEEEccC----C-cEEEEe
Q 018474          104 -------DGGVILCDNE-KGLLKVT-EEG--VEAIVPD----A--------------SFTNDVIAASD----G-TLYFTV  149 (355)
Q Consensus       104 -------~g~L~v~~~~-~gl~~~~-~~g--~~~~~~~----~--------------~~~~~l~~d~d----G-~ly~~d  149 (355)
                             ++.+|++|.. .||+.++ .+|  .+.....    .              ..+++|+.+++    + .||+.-
T Consensus       163 ~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~p  242 (381)
T 3q6k_A          163 NPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLA  242 (381)
T ss_dssp             CTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEE
T ss_pred             cCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEE
Confidence                   4568999975 5799999 566  3333111    0              36677888876    4 688876


Q ss_pred             CCCCCCCccccccccccCCCCeEEEEe------CC-CCeEEEeeccccccc--cEEEe-CCCCEEEEEeCCCCeEEEEEe
Q 018474          150 ASTKYTPTDFYKDMAEGKPYGQLRKYD------PK-LKETTVLHEGFYFAN--GIALS-KNEDFVVVCESWKFRCRRYWL  219 (355)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~g~l~~~d------p~-~~~~~~~~~~~~~pn--gi~~~-~dg~~l~v~~~~~~~i~~~~~  219 (355)
                      .++                 ..+|+..      +. ..+++.+.+......  +++++ .+| .+|+++...+.|.+++.
T Consensus       243 lss-----------------~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G-~ly~~~~~~~aI~~w~~  304 (381)
T 3q6k_A          243 GSA-----------------IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTK-VIFFAEANTKQVSCWNT  304 (381)
T ss_dssp             SSC-----------------SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTC-EEEEEESSSSEEEEEET
T ss_pred             CCC-----------------CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCC-eEEEEeccCCeEEEEeC
Confidence            542                 1344332      10 123333333221233  45675 555 59999999999999998


Q ss_pred             CC-CC-CcceeEecccC-CCCcCceEECCCCCEEEEeec
Q 018474          220 KG-DR-AGILDAFIENL-PGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       220 ~~-~~-~~~~~~~~~~~-~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      ++ .- ....+.+.... --+|+++.+|.+|.+|+.+++
T Consensus       305 ~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn~  343 (381)
T 3q6k_A          305 QKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSNG  343 (381)
T ss_dssp             TSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEECS
T ss_pred             CCCccccCceEEEEECCCccccCeEEECCCCeEEEEECc
Confidence            65 21 23444444322 236999999999999999876

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=98.28  E-value=0.00043  Score=62.61  Aligned_cols=185  Identities=12%  Similarity=0.056  Sum_probs=107.1

Q ss_pred             CCCceEEEeeC--CCeEEEEecCCEEEEEEcCCCeeEEe---eccCCCcccCeEECCC--CCEEEEeCCCc-EEEEc-CC
Q 018474           52 NHPEDVSVVVS--KGALYTATRDGWVKYFILHNETLVNW---KHIDSQSLLGLTTTKD--GGVILCDNEKG-LLKVT-EE  122 (355)
Q Consensus        52 ~~p~~i~~d~~--~g~l~~~~~~g~i~~~~~~~g~~~~~---~~~~~~p~~gl~~d~~--g~L~v~~~~~g-l~~~~-~~  122 (355)
                      ..-.++++.++  +..|++++.+|.|..++..+++....   ......+. .+++.++  ++++++....+ +..++ .+
T Consensus        56 ~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~l~~~~~d~~i~v~d~~~  134 (379)
T 3jrp_A           56 GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVN-SVQWAPHEYGPLLLVASSDGKVSVVEFKE  134 (379)
T ss_dssp             SCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEE-EEEECCGGGCSEEEEEETTSEEEEEECCT
T ss_pred             CcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceE-EEEeCCCCCCCEEEEecCCCcEEEEecCC
Confidence            44567888644  67788889999999999988863322   22234566 8889887  76555444444 55555 33


Q ss_pred             C----eEEEcCCcCCcccEEEcc-------------CCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCe--EE
Q 018474          123 G----VEAIVPDASFTNDVIAAS-------------DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE--TT  183 (355)
Q Consensus       123 g----~~~~~~~~~~~~~l~~d~-------------dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~--~~  183 (355)
                      +    ...+......+..+++++             ++.+.++...                 .+.+..||..+++  ..
T Consensus       135 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------dg~i~i~d~~~~~~~~~  197 (379)
T 3jrp_A          135 NGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA-----------------DNLVKIWKYNSDAQTYV  197 (379)
T ss_dssp             TSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEET-----------------TSCEEEEEEETTTTEEE
T ss_pred             CCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeC-----------------CCeEEEEEecCCCccee
Confidence            2    222323335678888888             5665555332                 4567777654432  11


Q ss_pred             Ee---eccccccccEEEeCC---CCEEEEEeCCCCeEEEEEeCCCCCcceeEeccc--CCCCcCceEECCCCCEEEEeec
Q 018474          184 VL---HEGFYFANGIALSKN---EDFVVVCESWKFRCRRYWLKGDRAGILDAFIEN--LPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       184 ~~---~~~~~~pngi~~~~d---g~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      ..   .........++++|+   ++. +++....+.|..|+++.............  .......+.++++|++.++...
T Consensus       198 ~~~~~~~h~~~v~~~~~sp~~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  276 (379)
T 3jrp_A          198 LESTLEGHSDWVRDVAWSPTVLLRSY-LASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG  276 (379)
T ss_dssp             EEEEECCCSSCEEEEEECCCCSSSEE-EEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEES
T ss_pred             eEEEEecccCcEeEEEECCCCCCCCe-EEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecC
Confidence            11   112233567899999   664 44455667899999865321111122211  2233445678888875554433

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.27  E-value=0.00011  Score=67.32  Aligned_cols=193  Identities=17%  Similarity=0.125  Sum_probs=102.0

Q ss_pred             CceEEEeeCCCeEEEEec---CCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCCCcEEEEcC-CC-eEEE
Q 018474           54 PEDVSVVVSKGALYTATR---DGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEKGLLKVTE-EG-VEAI  127 (355)
Q Consensus        54 p~~i~~d~~~g~l~~~~~---~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~~gl~~~~~-~g-~~~~  127 (355)
                      ..++++.|++..++....   +..|+.++..+++...+.........+..+.++|+ |+++.....++.++. ++ .+.+
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~  117 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVI  117 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEE
Confidence            556778866666554433   24789999988887766443333330377889987 545554556888884 55 4443


Q ss_pred             cCCcCCcccEEEccCCc-EEEEeCC---------CCCCCcccccccc---ccCCCCeEEEEeCCCCeEEEeecccccccc
Q 018474          128 VPDASFTNDVIAASDGT-LYFTVAS---------TKYTPTDFYKDMA---EGKPYGQLRKYDPKLKETTVLHEGFYFANG  194 (355)
Q Consensus       128 ~~~~~~~~~l~~d~dG~-ly~~d~~---------~~~~~~~~~~~~~---~~~~~g~l~~~dp~~~~~~~~~~~~~~png  194 (355)
                      ....   .+  ..++|+ |.++...         ..+..........   .......++.+|.++++.+.+.........
T Consensus       118 ~~~~---~~--~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~  192 (396)
T 3c5m_A          118 YTVD---EE--WKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGH  192 (396)
T ss_dssp             EECC---TT--EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEE
T ss_pred             Eecc---cc--cCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCccccc
Confidence            3211   11  112221 1111000         0000000000000   012345799999988887766544444567


Q ss_pred             EEEeC-CCCEEEEEeCCC-----CeEEEEEeCCCCCcceeEecccCCC-CcCceEECCCCC-EEEEee
Q 018474          195 IALSK-NEDFVVVCESWK-----FRCRRYWLKGDRAGILDAFIENLPG-GPDNINLAPDGS-FWIGLI  254 (355)
Q Consensus       195 i~~~~-dg~~l~v~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~g-~p~~i~~d~~G~-lwv~~~  254 (355)
                      ++++| |++.++++....     .+|+.+++++...   +.+....+. .+..+.++++|+ |+++..
T Consensus       193 ~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~---~~l~~~~~~~~~~~~~~spdg~~l~~~~~  257 (396)
T 3c5m_A          193 PIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV---RKIKEHAEGESCTHEFWIPDGSAMAYVSY  257 (396)
T ss_dssp             EEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC---EESSCCCTTEEEEEEEECTTSSCEEEEEE
T ss_pred             ceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce---eEeeccCCCccccceEECCCCCEEEEEec
Confidence            88999 787666554332     4799998865322   222211111 234467888996 555443

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=98.26  E-value=0.00019  Score=64.45  Aligned_cols=188  Identities=12%  Similarity=0.036  Sum_probs=105.2

Q ss_pred             EecCCCCCCCceEEEeeCCCeEEE-Eec---CCEEEEEEcCCCeeEEee--ccCCCcccCeEECCC---CC-EEEEeCCC
Q 018474           45 KLGEGCVNHPEDVSVVVSKGALYT-ATR---DGWVKYFILHNETLVNWK--HIDSQSLLGLTTTKD---GG-VILCDNEK  114 (355)
Q Consensus        45 ~~~~~~~~~p~~i~~d~~~g~l~~-~~~---~g~i~~~~~~~g~~~~~~--~~~~~p~~gl~~d~~---g~-L~v~~~~~  114 (355)
                      .+..+.-....++++.+++..+.+ ++.   +|.|..++..+++.....  .....+. .+++.++   |+ |+.+...+
T Consensus        12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~l~~~~~dg   90 (357)
T 3i2n_A           12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIK-CGTFGATSLQQRYLATGDFGG   90 (357)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEE-EEECTTCCTTTCCEEEEETTS
T ss_pred             hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEE-EEEEcCCCCCCceEEEecCCC
Confidence            333344466788999965555554 443   789999999877654332  2234466 8888877   45 55555444


Q ss_pred             cEEEEc-CCC---eEEEcCCcCCcccE------EEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCe--E
Q 018474          115 GLLKVT-EEG---VEAIVPDASFTNDV------IAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE--T  182 (355)
Q Consensus       115 gl~~~~-~~g---~~~~~~~~~~~~~l------~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~--~  182 (355)
                      .+..++ .++   ...+......+.++      +++++++..++.+.                 .+.+..||..+++  .
T Consensus        91 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~-----------------d~~i~vwd~~~~~~~~  153 (357)
T 3i2n_A           91 NLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSR-----------------DGTVKVWDPRQKDDPV  153 (357)
T ss_dssp             CEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEET-----------------TSCEEEECTTSCSSCS
T ss_pred             eEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeC-----------------CCeEEEEeCCCCCCcc
Confidence            466666 332   44444333455555      44677866665432                 4567788876654  2


Q ss_pred             EEeecccc----ccccEE----EeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECC---CCCEEE
Q 018474          183 TVLHEGFY----FANGIA----LSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAP---DGSFWI  251 (355)
Q Consensus       183 ~~~~~~~~----~pngi~----~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~---~G~lwv  251 (355)
                      ..+.....    ....++    ++++++.++.+ ...+.|..|+++....   .... ........+.+++   +|++.+
T Consensus       154 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~---~~~~-~~~~~v~~~~~~~~~~~~~~l~  228 (357)
T 3i2n_A          154 ANMEPVQGENKRDCWTVAFGNAYNQEERVVCAG-YDNGDIKLFDLRNMAL---RWET-NIKNGVCSLEFDRKDISMNKLV  228 (357)
T ss_dssp             EEECCCTTSCCCCEEEEEEECCCC-CCCEEEEE-ETTSEEEEEETTTTEE---EEEE-ECSSCEEEEEESCSSSSCCEEE
T ss_pred             eeccccCCCCCCceEEEEEEeccCCCCCEEEEE-ccCCeEEEEECccCce---eeec-CCCCceEEEEcCCCCCCCCEEE
Confidence            22211111    123344    67899866555 4567899999864322   1111 2333356677887   777655


Q ss_pred             Eeec
Q 018474          252 GLIK  255 (355)
Q Consensus       252 ~~~~  255 (355)
                      +...
T Consensus       229 ~~~~  232 (357)
T 3i2n_A          229 ATSL  232 (357)
T ss_dssp             EEES
T ss_pred             EECC
Confidence            5443

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=98.26  E-value=0.0003  Score=70.82  Aligned_cols=253  Identities=11%  Similarity=0.014  Sum_probs=135.8

Q ss_pred             ceEEEeeCCCeEEEEecC---------CEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEcC-CC-
Q 018474           55 EDVSVVVSKGALYTATRD---------GWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE-EG-  123 (355)
Q Consensus        55 ~~i~~d~~~g~l~~~~~~---------g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~-~g-  123 (355)
                      .++.+.|++..+.+++.+         +.++.+|..+++.+.+........ ..++.+||+..+....+.|+..+. +| 
T Consensus        65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~-~~~~SPdG~~la~~~~~~i~~~~~~~~~  143 (740)
T 4a5s_A           65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQ-WVTWSPVGHKLAYVWNNDIYVKIEPNLP  143 (740)
T ss_dssp             CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEE-EEEECSSTTCEEEEETTEEEEESSTTSC
T ss_pred             cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccCCCcce-eeEECCCCCEEEEEECCeEEEEECCCCc
Confidence            347888777777766543         567789998888766543334455 677889997333333456888874 55 


Q ss_pred             eEEEcCCc-------------------CCcccEEEccCCc-EEEEeCCCCCCCccccc--------------c---cccc
Q 018474          124 VEAIVPDA-------------------SFTNDVIAASDGT-LYFTVASTKYTPTDFYK--------------D---MAEG  166 (355)
Q Consensus       124 ~~~~~~~~-------------------~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~--------------~---~~~~  166 (355)
                      .+.+....                   .....+.++|||+ |.+..... -.++.+..              .   ...+
T Consensus       144 ~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~-~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G  222 (740)
T 4a5s_A          144 SYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFND-TEVPLIEYSFYSDESLQYPKTVRVPYPKAG  222 (740)
T ss_dssp             CEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEEC-TTCCEEEEEECCSTTCSSCEEEEEECCBTT
T ss_pred             eEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcc-cCCceEEEEeecCCCCCCCcceeecCCCCc
Confidence            55543221                   1123478999995 55442110 00110000              0   0111


Q ss_pred             --CCCCeEEEEeCCC---C---eEEEeec------cccccccEEEeCCCCEEEE-EeCCC--CeEEEEEeCCCC----Cc
Q 018474          167 --KPYGQLRKYDPKL---K---ETTVLHE------GFYFANGIALSKNEDFVVV-CESWK--FRCRRYWLKGDR----AG  225 (355)
Q Consensus       167 --~~~g~l~~~dp~~---~---~~~~~~~------~~~~pngi~~~~dg~~l~v-~~~~~--~~i~~~~~~~~~----~~  225 (355)
                        .....++.+|.++   +   +...+..      .......++++|||+.++. .....  ..|+.+++++..    ..
T Consensus       223 ~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~  302 (740)
T 4a5s_A          223 AVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCL  302 (740)
T ss_dssp             SCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEEC
T ss_pred             CcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCcccccee
Confidence              1223688999988   6   4444432      1222345789999984333 33222  258888876543    11


Q ss_pred             ceeEe-cccCCCC-----cCceEECCCCCEEE--EeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEE
Q 018474          226 ILDAF-IENLPGG-----PDNINLAPDGSFWI--GLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVK  297 (355)
Q Consensus       226 ~~~~~-~~~~~g~-----p~~i~~d~~G~lwv--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  297 (355)
                      ....+ .+...+.     +....+.+||+.++  ....                                  .....|+.
T Consensus       303 ~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~----------------------------------~G~~~l~~  348 (740)
T 4a5s_A          303 VARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNE----------------------------------EGYRHICY  348 (740)
T ss_dssp             GGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECT----------------------------------TSCEEEEE
T ss_pred             EEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcC----------------------------------CCceEEEE
Confidence            11111 1112221     33577889997322  2222                                  22357999


Q ss_pred             EeCCCCeEEEEEECCCCCcccceeEEEEeCCEEEEeecC------CCeEEEeeCCC
Q 018474          298 VDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQ------SNFIGILPLDG  347 (355)
Q Consensus       298 ~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~------~~~i~~~~~~~  347 (355)
                      ++. +|.....++..+   .........+++.||+.+..      ...|.++++++
T Consensus       349 ~~~-~~~~~~~lT~g~---~~v~~~~~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g  400 (740)
T 4a5s_A          349 FQI-DKKDCTFITKGT---WEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLID  400 (740)
T ss_dssp             EET-TCSSCEESCCSS---SCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEETTE
T ss_pred             EEC-CCCceEecccCC---EEEEEEEEEeCCEEEEEEecCCCCCceeEEEEEECCC
Confidence            998 666555555422   21222222457888887654      24677777654

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=98.25  E-value=0.00054  Score=61.64  Aligned_cols=151  Identities=13%  Similarity=0.046  Sum_probs=90.0

Q ss_pred             CCCceEEEeeCCCeEEEEecCCEEEEEEcCCC-------eeE-EeeccCCCcccCeEECCCCCEEEEeCCCc-EEEEcC-
Q 018474           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNE-------TLV-NWKHIDSQSLLGLTTTKDGGVILCDNEKG-LLKVTE-  121 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g-------~~~-~~~~~~~~p~~gl~~d~~g~L~v~~~~~g-l~~~~~-  121 (355)
                      ..-.++++.|++..|.+++.++.|..++..+.       +.. .+......+. ++++.++|+++++...++ +..++. 
T Consensus        59 ~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~-~v~~sp~g~~las~s~D~~v~iwd~~  137 (330)
T 2hes_X           59 KAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVK-GVAWSNDGYYLATCSRDKSVWIWETD  137 (330)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEE-EEEECTTSCEEEEEETTSCEEEEECC
T ss_pred             CCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEE-EEEECCCCCEEEEEeCCCEEEEEecc
Confidence            44568899977777888889999998887432       111 1111223466 899999998766554445 444442 


Q ss_pred             -CC-----eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEE---Eeecccccc
Q 018474          122 -EG-----VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT---VLHEGFYFA  192 (355)
Q Consensus       122 -~g-----~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~---~~~~~~~~p  192 (355)
                       .+     +..+......+++++++|+|.+.++.+.                 .+.+..||..++..+   .+.......
T Consensus       138 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~-----------------D~~i~iW~~~~~~~~~~~~~~~h~~~v  200 (330)
T 2hes_X          138 ESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSY-----------------DDTVRIWKDYDDDWECVAVLNGHEGTV  200 (330)
T ss_dssp             TTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEET-----------------TSCEEEEEEETTEEEEEEEECCCSSCE
T ss_pred             CCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcC-----------------CCeEEEEECCCCCeeEEEEccCCCCcE
Confidence             22     2233333367889999999987776443                 345666665444322   222222334


Q ss_pred             ccEEEeCC--CCEEEEEeCCCCeEEEEEeCC
Q 018474          193 NGIALSKN--EDFVVVCESWKFRCRRYWLKG  221 (355)
Q Consensus       193 ngi~~~~d--g~~l~v~~~~~~~i~~~~~~~  221 (355)
                      ..++++|+  +. .+++....+.|..|++.+
T Consensus       201 ~~~~~~~~~~~~-~l~s~s~D~~v~iw~~~~  230 (330)
T 2hes_X          201 WSSDFDKTEGVF-RLCSGSDDSTVRVWKYMG  230 (330)
T ss_dssp             EEEEECCSSSSC-EEEEEETTSCEEEEEEEE
T ss_pred             EEEEecCCCCee-EEEEEeCCCeEEEEEecC
Confidence            57889998  44 445555567788887743

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=98.24  E-value=0.00031  Score=63.53  Aligned_cols=172  Identities=10%  Similarity=0.019  Sum_probs=102.1

Q ss_pred             CCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeE-------ECCCCCEEEEeCCCcEEEEc-CCC--eEEEc-CCc
Q 018474           63 KGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLT-------TTKDGGVILCDNEKGLLKVT-EEG--VEAIV-PDA  131 (355)
Q Consensus        63 ~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~-------~d~~g~L~v~~~~~gl~~~~-~~g--~~~~~-~~~  131 (355)
                      +..++++..+|.|..+|..+++...... ...+. .+.       ...|+.+.+-+....+..++ .++  ++.+. ...
T Consensus        48 ~~~l~sg~~Dg~v~iwd~~~~~~~~~~~-~~~v~-~~~~~~~~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~  125 (343)
T 3lrv_A           48 KWVCMCRCEDGALHFTQLKDSKTITTIT-TPNPR-TGGEHPAIISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSA  125 (343)
T ss_dssp             EEEEEEEEETTEEEEEEESSSSCEEEEE-EECCC-TTCCCCSEEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCS
T ss_pred             CCEEEEECCCCcEEEEECCCCcEEEEEe-cCCce-eeeeCCceEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCC
Confidence            5668888899999999998776432221 11222 322       23455555544444444444 233  33322 111


Q ss_pred             CCcccEEEcc--CCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecc--ccccccEEEeCCCCEEEEE
Q 018474          132 SFTNDVIAAS--DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG--FYFANGIALSKNEDFVVVC  207 (355)
Q Consensus       132 ~~~~~l~~d~--dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~--~~~pngi~~~~dg~~l~v~  207 (355)
                      ..+.++++++  +|+++++.+.                 .+.+..||..+++.......  ......++++||++ ++++
T Consensus       126 ~~v~~~~~~~~~~~~~l~s~s~-----------------dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~-~las  187 (343)
T 3lrv_A          126 NEIIYMYGHNEVNTEYFIWADN-----------------RGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSL-LLAL  187 (343)
T ss_dssp             SCEEEEECCC---CCEEEEEET-----------------TCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSC-EEEE
T ss_pred             CCEEEEEcCCCCCCCEEEEEeC-----------------CCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCC-EEEE
Confidence            4578889999  8887776433                 56788888877766433322  22367899999998 4555


Q ss_pred             eCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474          208 ESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       208 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      ....+.|..|+++...... ..+.....+....+.++++|++.++...
T Consensus       188 g~~dg~i~iwd~~~~~~~~-~~~~~~h~~~v~~l~fs~~g~~l~s~~~  234 (343)
T 3lrv_A          188 YSPDGILDVYNLSSPDQAS-SRFPVDEEAKIKEVKFADNGYWMVVECD  234 (343)
T ss_dssp             ECTTSCEEEEESSCTTSCC-EECCCCTTSCEEEEEECTTSSEEEEEES
T ss_pred             EcCCCEEEEEECCCCCCCc-cEEeccCCCCEEEEEEeCCCCEEEEEeC
Confidence            5567889999986533210 1222113334566788999987776654

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=98.23  E-value=0.0028  Score=57.30  Aligned_cols=153  Identities=10%  Similarity=0.061  Sum_probs=95.9

Q ss_pred             CCCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEe---eccCCCcccCeEECCCCCEEEEeCCCc-EEEEc-CC
Q 018474           48 EGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNW---KHIDSQSLLGLTTTKDGGVILCDNEKG-LLKVT-EE  122 (355)
Q Consensus        48 ~~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~---~~~~~~p~~gl~~d~~g~L~v~~~~~g-l~~~~-~~  122 (355)
                      .+.-..-.++++.|++..|.+++.++.+..++..++..+..   ......+. ++++.++|+++++...++ +..++ .+
T Consensus        58 ~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~-~v~~sp~~~~l~s~s~D~~v~iwd~~~  136 (345)
T 3fm0_A           58 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVK-SVAWAPSGNLLATCSRDKSVWVWEVDE  136 (345)
T ss_dssp             SSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEE-EEEECTTSSEEEEEETTSCEEEEEECT
T ss_pred             cccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCce-EEEEeCCCCEEEEEECCCeEEEEECCC
Confidence            34444567899997777788889999999998866654322   22234466 899999998766554444 44445 33


Q ss_pred             C--e---EEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEE---eecccccccc
Q 018474          123 G--V---EAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV---LHEGFYFANG  194 (355)
Q Consensus       123 g--~---~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~---~~~~~~~png  194 (355)
                      +  .   ..+......+..++++|+|.+.++.+.                 .+.+..||..+++...   +.........
T Consensus       137 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~-----------------d~~i~~w~~~~~~~~~~~~~~~h~~~v~~  199 (345)
T 3fm0_A          137 EDEYECVSVLNSHTQDVKHVVWHPSQELLASASY-----------------DDTVKLYREEEDDWVCCATLEGHESTVWS  199 (345)
T ss_dssp             TSCEEEEEEECCCCSCEEEEEECSSSSCEEEEET-----------------TSCEEEEEEETTEEEEEEEECCCSSCEEE
T ss_pred             CCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeC-----------------CCcEEEEEecCCCEEEEEEecCCCCceEE
Confidence            2  2   233333366888999999976665432                 3456666665554332   2222234567


Q ss_pred             EEEeCCCCEEEEEeCCCCeEEEEEe
Q 018474          195 IALSKNEDFVVVCESWKFRCRRYWL  219 (355)
Q Consensus       195 i~~~~dg~~l~v~~~~~~~i~~~~~  219 (355)
                      ++++||++.|..+ ...+.|..++.
T Consensus       200 l~~sp~g~~l~s~-s~D~~v~iW~~  223 (345)
T 3fm0_A          200 LAFDPSGQRLASC-SDDRTVRIWRQ  223 (345)
T ss_dssp             EEECTTSSEEEEE-ETTSCEEEEEE
T ss_pred             EEECCCCCEEEEE-eCCCeEEEecc
Confidence            9999999965544 45667777765

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=98.20  E-value=0.0003  Score=64.66  Aligned_cols=181  Identities=13%  Similarity=0.071  Sum_probs=112.6

Q ss_pred             CceEEEeeC-CCeEEEEecCCEEEEEEcCCCeeEEeec------cCCCcccCeEECC-CCCEEEEeCCCc-EEEEc-C-C
Q 018474           54 PEDVSVVVS-KGALYTATRDGWVKYFILHNETLVNWKH------IDSQSLLGLTTTK-DGGVILCDNEKG-LLKVT-E-E  122 (355)
Q Consensus        54 p~~i~~d~~-~g~l~~~~~~g~i~~~~~~~g~~~~~~~------~~~~p~~gl~~d~-~g~L~v~~~~~g-l~~~~-~-~  122 (355)
                      ..++.+.+. +..++.++.++.|..+|..+++......      ...... .+.+.+ +++++++...++ +..++ . .
T Consensus       160 v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~l~sgs~D~~v~~wd~~~~  238 (380)
T 3iz6_a          160 ASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVL-SLSINSLNANMFISGSCDTTVRLWDLRIT  238 (380)
T ss_dssp             CCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEE-EEEECSSSCCEEEEEETTSCEEEEETTTT
T ss_pred             eEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeE-EEEeecCCCCEEEEEECCCeEEEEECCCC
Confidence            445555543 3458888899999999998876543221      112344 667764 677766655555 44455 3 3


Q ss_pred             C--eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecc--------cccc
Q 018474          123 G--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG--------FYFA  192 (355)
Q Consensus       123 g--~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~--------~~~p  192 (355)
                      +  +..+......+++++++|+|...++.+.                 .+.+..||..+++.......        ....
T Consensus       239 ~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~-----------------D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v  301 (380)
T 3iz6_a          239 SRAVRTYHGHEGDINSVKFFPDGQRFGTGSD-----------------DGTCRLFDMRTGHQLQVYNREPDRNDNELPIV  301 (380)
T ss_dssp             CCCCEEECCCSSCCCEEEECTTSSEEEEECS-----------------SSCEEEEETTTTEEEEEECCCCSSSCCSSCSC
T ss_pred             CcceEEECCcCCCeEEEEEecCCCeEEEEcC-----------------CCeEEEEECCCCcEEEEecccccccccccCce
Confidence            3  5555554467999999999988777544                 56788888877754332211        1124


Q ss_pred             ccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEec---ccCCCCcCceEECCCCCEEEEeec
Q 018474          193 NGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFI---ENLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       193 ngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      ..++++|+|+.++ +....+.|..|+.....  ....+.   ....+....+.++++|++.++...
T Consensus       302 ~~~~~s~~g~~l~-~g~~dg~i~vwd~~~~~--~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~  364 (380)
T 3iz6_a          302 TSVAFSISGRLLF-AGYSNGDCYVWDTLLAE--MVLNLGTLQNSHEGRISCLGLSSDGSALCTGSW  364 (380)
T ss_dssp             SEEEECSSSSEEE-EECTTSCEEEEETTTCC--EEEEECCSCSSCCCCCCEEEECSSSSEEEEECT
T ss_pred             EEEEECCCCCEEE-EEECCCCEEEEECCCCc--eEEEEecccCCCCCceEEEEECCCCCEEEEeeC
Confidence            6799999999554 45567889999874321  111111   122233456788999987776544

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=98.20  E-value=3.2e-05  Score=65.19  Aligned_cols=105  Identities=16%  Similarity=0.068  Sum_probs=73.9

Q ss_pred             cCceEecCCCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeecc-------C-CCcccCeEECCCCCEEEEeC
Q 018474           41 KGLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI-------D-SQSLLGLTTTKDGGVILCDN  112 (355)
Q Consensus        41 ~~~~~~~~~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~-------~-~~p~~gl~~d~~g~L~v~~~  112 (355)
                      ..+.++..+.......++++| +|.||.. .+|.++++++.+++...|...       + +.=. .+.+|++|.||+.+ 
T Consensus        30 ~~a~~iG~~gw~~~~~laf~P-~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~-a~~fD~~G~LYav~-  105 (236)
T 1tl2_A           30 ARATLIGKGGWSNFKFLFLSP-GGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQ-FLFFDPNGYLYAVS-  105 (236)
T ss_dssp             HHSEEEESSSCTTCSEEEECT-TSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCS-EEEECTTSCEEEEE-
T ss_pred             hhccccCccccccceeEEECC-CccEEEE-eCCeEEEECCCCCCcccccccccEecccccccce-EEEECCCCCEEEeC-
Confidence            356778775578889999995 8899988 789999999866433322111       1 0113 68899999999995 


Q ss_pred             CCcEEEEcC--CC-e------EEEcCC-cCCcccEEEccCCcEEEEe
Q 018474          113 EKGLLKVTE--EG-V------EAIVPD-ASFTNDVIAASDGTLYFTV  149 (355)
Q Consensus       113 ~~gl~~~~~--~g-~------~~~~~~-~~~~~~l~~d~dG~ly~~d  149 (355)
                      .+.|+++++  ++ -      ..+... -.....|.++|+|.||..+
T Consensus       106 dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~  152 (236)
T 1tl2_A          106 KDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH  152 (236)
T ss_dssp             TTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE
T ss_pred             CCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe
Confidence            457999983  33 2      222221 1456889999999999876

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.19  E-value=0.0019  Score=63.26  Aligned_cols=42  Identities=17%  Similarity=0.269  Sum_probs=29.9

Q ss_pred             ceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeCCEEEEeec
Q 018474          292 GARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASL  335 (355)
Q Consensus       292 ~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~  335 (355)
                      .+.+..||.++|+.+-.+..+.+.....+  +.+.+|++||...
T Consensus       493 dg~l~A~D~~tG~~lW~~~l~~g~~~~P~--~y~~~G~qyv~~~  534 (599)
T 1w6s_A          493 DGYLKARDSDTGDLLWKFKIPSGAIGYPM--TYTHKGTQYVAIY  534 (599)
T ss_dssp             TSEEEEEETTTCCEEEEEECSSCCCSCCE--EEEETTEEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEeeCCCCcEeccE--EEEeCCEEEEEEE
Confidence            35799999879999888887776433222  3367899988643

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.19  E-value=0.0017  Score=63.34  Aligned_cols=43  Identities=26%  Similarity=0.405  Sum_probs=30.1

Q ss_pred             eEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeCCEEEEeecCC
Q 018474          293 ARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQS  337 (355)
Q Consensus       293 ~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~  337 (355)
                      +.+..+|.++|+.+-.+..+.+.....  .+...+|++|++...+
T Consensus       485 g~l~a~D~~tG~~lw~~~~~~~~~~~p--~~~~~~G~~yv~~~~G  527 (571)
T 2ad6_A          485 GYLKALDNKDGKELWNFKMPSGGIGSP--MTYSFKGKQYIGSMYG  527 (571)
T ss_dssp             SEEEEEETTTCCEEEEEECSSCCCSCC--EEEEETTEEEEEEEEC
T ss_pred             CeEEEEECCCCCEEEEEeCCCCcEeee--EEEEECCEEEEEEECC
Confidence            579999987999988888765532222  2335789999986533

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.18  E-value=0.0027  Score=63.33  Aligned_cols=53  Identities=13%  Similarity=0.181  Sum_probs=37.9

Q ss_pred             eEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeCCEEEEeecC-----------------CCeEEEeeCCC
Q 018474          293 ARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQ-----------------SNFIGILPLDG  347 (355)
Q Consensus       293 ~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~-----------------~~~i~~~~~~~  347 (355)
                      +.+..+|.++|+.+-.+..+.+.....+  ..+.+|++|+....                 ++++..+.|+.
T Consensus       498 g~l~a~D~~tG~~lw~~~~~~~~~~~p~--~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~  567 (677)
T 1kb0_A          498 GRLVAYHAATGEKLWEAPTGTGVVAAPS--TYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG  567 (677)
T ss_dssp             SEEEEEETTTCCEEEEEECSSCCCSCCE--EEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred             CcEEEEECCCCceeeeeeCCCCcccCCE--EEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence            5799999878999999987766432222  23578888886432                 47889998883

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=98.17  E-value=0.00053  Score=68.40  Aligned_cols=196  Identities=9%  Similarity=-0.010  Sum_probs=107.7

Q ss_pred             CCceEEEeeCCCeEEEEecC---------CEEEEEEcCCCeeEEeeccCC---CcccCeEECCCCCEEEEeCCCcEEEEc
Q 018474           53 HPEDVSVVVSKGALYTATRD---------GWVKYFILHNETLVNWKHIDS---QSLLGLTTTKDGGVILCDNEKGLLKVT  120 (355)
Q Consensus        53 ~p~~i~~d~~~g~l~~~~~~---------g~i~~~~~~~g~~~~~~~~~~---~p~~gl~~d~~g~L~v~~~~~gl~~~~  120 (355)
                      ...++++.|++..|..+..+         +.|+.+|..+++.+.+.....   .+. .+++.+||+..+....+.++.++
T Consensus        62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~-~~~~SPdG~~la~~~~~~i~~~~  140 (723)
T 1xfd_A           62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQ-YAGWGPKGQQLIFIFENNIYYCA  140 (723)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCS-BCCBCSSTTCEEEEETTEEEEES
T ss_pred             ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCcccccccc-ccEECCCCCEEEEEECCeEEEEE
Confidence            37889999777767766542         778899998887655543222   255 78889999644333345788888


Q ss_pred             C-CC-eEEEcCC-cC------------------CcccEEEccCCc-EEEEeCCCCCCCcccc------------ccc-c-
Q 018474          121 E-EG-VEAIVPD-AS------------------FTNDVIAASDGT-LYFTVASTKYTPTDFY------------KDM-A-  164 (355)
Q Consensus       121 ~-~g-~~~~~~~-~~------------------~~~~l~~d~dG~-ly~~d~~~~~~~~~~~------------~~~-~-  164 (355)
                      . +| ...+... ..                  .+.+++++|||+ |.++..... .+..+.            ..+ + 
T Consensus       141 ~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  219 (723)
T 1xfd_A          141 HVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDS-RVPIMELPTYTGSIYPTVKPYHYP  219 (723)
T ss_dssp             SSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECT-TSCEEEECCCSSSSSCCCEEEECC
T ss_pred             CCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCC-ccceEEeeccCCcCCCcceeccCC
Confidence            4 55 4443322 11                  226799999995 555432100 000000            000 0 


Q ss_pred             -cc--CCCCeEEEEeCCCCeE-EEeecc------ccccccEEEeCCCCEEEEE-eCC--CCeEEEEEeCCCCCcceeEec
Q 018474          165 -EG--KPYGQLRKYDPKLKET-TVLHEG------FYFANGIALSKNEDFVVVC-ESW--KFRCRRYWLKGDRAGILDAFI  231 (355)
Q Consensus       165 -~~--~~~g~l~~~dp~~~~~-~~~~~~------~~~pngi~~~~dg~~l~v~-~~~--~~~i~~~~~~~~~~~~~~~~~  231 (355)
                       .+  .....++.||.++++. ..+...      ......++++|||+.++.. +..  ...|+.+++++...  ...+.
T Consensus       220 ~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~--~~~~~  297 (723)
T 1xfd_A          220 KAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVC--TKKHE  297 (723)
T ss_dssp             BTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCE--EEEEE
T ss_pred             CCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcc--eEEEE
Confidence             01  1123788999887763 333221      1223458999999966444 221  24577788754322  11111


Q ss_pred             ccCCCC----cCceEECCCCC-EEEE
Q 018474          232 ENLPGG----PDNINLAPDGS-FWIG  252 (355)
Q Consensus       232 ~~~~g~----p~~i~~d~~G~-lwv~  252 (355)
                      ....+.    +..+.+++||+ |++.
T Consensus       298 ~~~~~~~~~~~~~~~~spdg~~l~~~  323 (723)
T 1xfd_A          298 DESEAWLHRQNEEPVFSKDGRKFFFI  323 (723)
T ss_dssp             EECSSCCCCCCCCCEECTTSCSEEEE
T ss_pred             eccCCEEeccCCCceEcCCCCeEEEE
Confidence            111222    23678889997 4443

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=98.17  E-value=0.0048  Score=57.60  Aligned_cols=138  Identities=13%  Similarity=0.096  Sum_probs=73.5

Q ss_pred             CCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecc--cCCCCcCceEECCC
Q 018474          169 YGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIE--NLPGGPDNINLAPD  246 (355)
Q Consensus       169 ~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~g~p~~i~~d~~  246 (355)
                      .+.+..||..+++........ ...-.+++.+++.++. ....+.|..|+++...  ....+..  ...+....+.++  
T Consensus       298 d~~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~l~~-~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~v~~~~~~--  371 (445)
T 2ovr_B          298 DTSIRVWDVETGNCIHTLTGH-QSLTSGMELKDNILVS-GNADSTVKIWDIKTGQ--CLQTLQGPNKHQSAVTCLQFN--  371 (445)
T ss_dssp             TSCEEEEETTTCCEEEEECCC-CSCEEEEEEETTEEEE-EETTSCEEEEETTTCC--EEEEECSTTSCSSCEEEEEEC--
T ss_pred             CCeEEEEECCCCCEEEEEcCC-cccEEEEEEeCCEEEE-EeCCCeEEEEECCCCc--EEEEEccCCCCCCCEEEEEEC--
Confidence            567888888777654332221 1222345556664544 4466789999975322  1222221  011222335554  


Q ss_pred             CCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEEC-CCCCcccceeEEEE
Q 018474          247 GSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFND-PDATYISFVTSAAE  325 (355)
Q Consensus       247 G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~-~~g~~~~~~~~~~~  325 (355)
                      +++.++....                                    +.|..+|.++|+.+..+.. ..+.....+..+..
T Consensus       372 ~~~l~s~~~d------------------------------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~  415 (445)
T 2ovr_B          372 KNFVITSSDD------------------------------------GTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRA  415 (445)
T ss_dssp             SSEEEEEETT------------------------------------SEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEE
T ss_pred             CCEEEEEeCC------------------------------------CeEEEEECCCCceeeeeeccccCCCCceEEEEEe
Confidence            5555554431                                    4688888767888777742 22222345666776


Q ss_pred             eCCEEE--EeecCCC---eEEEeeCCCC
Q 018474          326 FDGNLY--LASLQSN---FIGILPLDGP  348 (355)
Q Consensus       326 ~~g~L~--v~~~~~~---~i~~~~~~~~  348 (355)
                      ..+..+  +++..+.   +|.+++++..
T Consensus       416 s~~~~~la~~~~dg~~~~~l~v~df~~~  443 (445)
T 2ovr_B          416 SNTKLVCAVGSRNGTEETKLLVLDFDVD  443 (445)
T ss_dssp             CSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred             cCCEEEEEEcccCCCCccEEEEEECCCC
Confidence            654433  3443332   5888887764

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=98.16  E-value=0.0038  Score=56.16  Aligned_cols=171  Identities=10%  Similarity=0.036  Sum_probs=96.7

Q ss_pred             CCeEEEEecCCEEEEEEcCCCe-eEEeecc-CCCcccCeEECC--CCCEEEEeCCCc-EEEEc-CCC-e-EEEcCC-cCC
Q 018474           63 KGALYTATRDGWVKYFILHNET-LVNWKHI-DSQSLLGLTTTK--DGGVILCDNEKG-LLKVT-EEG-V-EAIVPD-ASF  133 (355)
Q Consensus        63 ~g~l~~~~~~g~i~~~~~~~g~-~~~~~~~-~~~p~~gl~~d~--~g~L~v~~~~~g-l~~~~-~~g-~-~~~~~~-~~~  133 (355)
                      ++.+.+-..++.+..++..+++ ...+... ...+. .+++.+  +|+++++...+| +..++ .++ . ...... ...
T Consensus        94 D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~  172 (343)
T 3lrv_A           94 CNRLLLLYPGNQITILDSKTNKVLREIEVDSANEII-YMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVE  172 (343)
T ss_dssp             TTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEE-EEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCC
T ss_pred             CCeEEEEEccCceEEeecCCcceeEEeecCCCCCEE-EEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCc
Confidence            3333333334444444554554 2222211 13466 888888  888777544444 55566 455 3 333222 246


Q ss_pred             cccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEE--Eeec-cccccccEEEeCCCCEEEEEeCC
Q 018474          134 TNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT--VLHE-GFYFANGIALSKNEDFVVVCESW  210 (355)
Q Consensus       134 ~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~--~~~~-~~~~pngi~~~~dg~~l~v~~~~  210 (355)
                      +..++++++|.+.++.+.                 .+.+..||..+++..  .+.. .......++++|+++.+..+.  
T Consensus       173 i~~~~~~pdg~~lasg~~-----------------dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~--  233 (343)
T 3lrv_A          173 YSSGVLHKDSLLLALYSP-----------------DGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC--  233 (343)
T ss_dssp             CCEEEECTTSCEEEEECT-----------------TSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE--
T ss_pred             eEEEEECCCCCEEEEEcC-----------------CCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe--
Confidence            889999999988776433                 567888888777533  3322 234457899999999776666  


Q ss_pred             CCeEEEEEeCCCCC-cceeEecccCCCCcC---ceEECCCCCEEEEeec
Q 018474          211 KFRCRRYWLKGDRA-GILDAFIENLPGGPD---NINLAPDGSFWIGLIK  255 (355)
Q Consensus       211 ~~~i~~~~~~~~~~-~~~~~~~~~~~g~p~---~i~~d~~G~lwv~~~~  255 (355)
                      .+.|..|+++.... ...+.+..  ...+-   .+.++++|++.++...
T Consensus       234 ~~~v~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~l~~~s~  280 (343)
T 3lrv_A          234 DQTVVCFDLRKDVGTLAYPTYTI--PEFKTGTVTYDIDDSGKNMIAYSN  280 (343)
T ss_dssp             SSBEEEEETTSSTTCBSSCCCBC-------CCEEEEECTTSSEEEEEET
T ss_pred             CCeEEEEEcCCCCcceeeccccc--ccccccceEEEECCCCCEEEEecC
Confidence            34899999864321 11111110  11222   3889999987777543

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=98.16  E-value=0.00014  Score=66.27  Aligned_cols=185  Identities=5%  Similarity=-0.084  Sum_probs=103.3

Q ss_pred             CCCceEEEeeCCCeEEEEecCCEEEEEEcCCCe----eEEeeccCCCcccCeEECCCCCEEE-EeCCCcEEEEc-CCC--
Q 018474           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNET----LVNWKHIDSQSLLGLTTTKDGGVIL-CDNEKGLLKVT-EEG--  123 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~----~~~~~~~~~~p~~gl~~d~~g~L~v-~~~~~gl~~~~-~~g--  123 (355)
                      ..-.++++.+++..|.+++.+|.|..++..+++    ...+......+. .+++.++|++++ +...+.+..++ .++  
T Consensus        56 ~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  134 (377)
T 3dwl_C           56 KIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAAT-FVRWSPNEDKFAVGSGARVISVCYFEQEND  134 (377)
T ss_dssp             SCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEE-EEECCTTSSCCEEEESSSCEEECCC-----
T ss_pred             ceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceE-EEEECCCCCEEEEEecCCeEEEEEECCccc
Confidence            445788898767778888899999999987765    222222334566 888888887544 44333344445 222  


Q ss_pred             ---eEEEcC-CcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCC------------------e
Q 018474          124 ---VEAIVP-DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLK------------------E  181 (355)
Q Consensus       124 ---~~~~~~-~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~------------------~  181 (355)
                         .+.+.. ....+.+++++++|++.++.+.                 .+.+..||..++                  +
T Consensus       135 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~-----------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  197 (377)
T 3dwl_C          135 WWVSKHLKRPLRSTILSLDWHPNNVLLAAGCA-----------------DRKAYVLSAYVRDVDAKPEASVWGSRLPFNT  197 (377)
T ss_dssp             CCCCEEECSSCCSCEEEEEECTTSSEEEEEES-----------------SSCEEEEEECCSSCC-CCCSCSSCSCCCEEE
T ss_pred             ceeeeEeecccCCCeEEEEEcCCCCEEEEEeC-----------------CCEEEEEEEEecccCCCccccccccccchhh
Confidence               234443 3367889999999976665432                 345666664321                  1


Q ss_pred             EEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcc--eeEecccCCCCcCceEECCCCCEEEEeecC
Q 018474          182 TTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGI--LDAFIENLPGGPDNINLAPDGSFWIGLIKM  256 (355)
Q Consensus       182 ~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~  256 (355)
                      .............++++||++.++.+ ...+.|..|+++......  ...+. ........+.+.++|++.++....
T Consensus       198 ~~~~~~~~~~v~~~~~sp~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~  272 (377)
T 3dwl_C          198 VCAEYPSGGWVHAVGFSPSGNALAYA-GHDSSVTIAYPSAPEQPPRALITVK-LSQLPLRSLLWANESAIVAAGYNY  272 (377)
T ss_dssp             EEECCCCSSSEEEEEECTTSSCEEEE-ETTTEEC-CEECSTTSCEEECCCEE-CSSSCEEEEEEEETTEEEEEESSS
T ss_pred             hhhcccCCceEEEEEECCCCCEEEEE-eCCCcEEEEECCCCCCcceeeEeec-CCCCceEEEEEcCCCCEEEEEcCC
Confidence            11111112235678999999955554 456789999986543210  11111 222234557788888777666443

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=98.15  E-value=0.002  Score=59.86  Aligned_cols=149  Identities=9%  Similarity=0.099  Sum_probs=95.4

Q ss_pred             CCCceEEEeeCC--CeEEEEecCCEEEEEEcCCCeeE----------------------------------------Eee
Q 018474           52 NHPEDVSVVVSK--GALYTATRDGWVKYFILHNETLV----------------------------------------NWK   89 (355)
Q Consensus        52 ~~p~~i~~d~~~--g~l~~~~~~g~i~~~~~~~g~~~----------------------------------------~~~   89 (355)
                      ..-.++++.+.+  ..+.+++.+|.|..++..+++..                                        .+.
T Consensus        94 ~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (447)
T 3dw8_B           94 EKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFA  173 (447)
T ss_dssp             CCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEEC
T ss_pred             CceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEec
Confidence            346788999655  57888888999988887543321                                        111


Q ss_pred             c-cCCCcccCeEECCCCCEEEEeCCCc-EEEEcCC--C--eEEEc-------CCcCCcccEEEccCC-cEEEEeCCCCCC
Q 018474           90 H-IDSQSLLGLTTTKDGGVILCDNEKG-LLKVTEE--G--VEAIV-------PDASFTNDVIAASDG-TLYFTVASTKYT  155 (355)
Q Consensus        90 ~-~~~~p~~gl~~d~~g~L~v~~~~~g-l~~~~~~--g--~~~~~-------~~~~~~~~l~~d~dG-~ly~~d~~~~~~  155 (355)
                      . ....+. ++++.++|+++++. .++ +..++..  +  .+.+.       .....+++++++++| ++.++.+.    
T Consensus       174 ~~h~~~v~-~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~----  247 (447)
T 3dw8_B          174 NAHTYHIN-SISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS----  247 (447)
T ss_dssp             SCCSSCCC-EEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEET----
T ss_pred             cCCCcceE-EEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeC----
Confidence            1 123466 88999999887776 445 4455533  3  33221       112568889999998 77766433    


Q ss_pred             CccccccccccCCCCeEEEEeCCCCeE-----EEeecccc------------ccccEEEeCCCCEEEEEeCCCCeEEEEE
Q 018474          156 PTDFYKDMAEGKPYGQLRKYDPKLKET-----TVLHEGFY------------FANGIALSKNEDFVVVCESWKFRCRRYW  218 (355)
Q Consensus       156 ~~~~~~~~~~~~~~g~l~~~dp~~~~~-----~~~~~~~~------------~pngi~~~~dg~~l~v~~~~~~~i~~~~  218 (355)
                                   .+.+..||..+++.     ..+.....            ....++++|+++.+..+. . +.|..|+
T Consensus       248 -------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~-~~v~iwd  312 (447)
T 3dw8_B          248 -------------KGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD-Y-LSVKVWD  312 (447)
T ss_dssp             -------------TSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE-S-SEEEEEE
T ss_pred             -------------CCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee-C-CeEEEEe
Confidence                         45688888776653     33322211            456799999999666554 4 8899999


Q ss_pred             eCC
Q 018474          219 LKG  221 (355)
Q Consensus       219 ~~~  221 (355)
                      +..
T Consensus       313 ~~~  315 (447)
T 3dw8_B          313 LNM  315 (447)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            853

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.14  E-value=0.0031  Score=61.49  Aligned_cols=65  Identities=6%  Similarity=-0.008  Sum_probs=42.3

Q ss_pred             eEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCC-----CcccCeEECCCCCEEEEeC------CCcEEEEcC-CC
Q 018474           56 DVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDS-----QSLLGLTTTKDGGVILCDN------EKGLLKVTE-EG  123 (355)
Q Consensus        56 ~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~-----~p~~gl~~d~~g~L~v~~~------~~gl~~~~~-~g  123 (355)
                      +++++  ++.+|+++.++.|+.+|.++|+..--.....     .....-.+. +|.+|++..      .+.++.+|. +|
T Consensus       110 ~~~~~--~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g~v~vg~~~~~~~~~g~v~a~D~~tG  186 (571)
T 2ad6_A          110 GLAYG--AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KDTVLMGCSGAELGVRGAVNAFDLKTG  186 (571)
T ss_dssp             CCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEEECBCGGGTCCCEEEEEETTTC
T ss_pred             ccEEE--CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CCEEEEEecCCccCCCCEEEEEECCCC
Confidence            35565  7789999999999999999997542212111     111012232 678999875      345889994 77

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=98.14  E-value=0.00038  Score=65.17  Aligned_cols=187  Identities=7%  Similarity=-0.051  Sum_probs=117.2

Q ss_pred             CCCCceEEEeeCCC-eEEEEecCCEEEEEEcCCCee--------EEeeccCCCcccCeEECC-CCCEEEEeCCCc-EEEE
Q 018474           51 VNHPEDVSVVVSKG-ALYTATRDGWVKYFILHNETL--------VNWKHIDSQSLLGLTTTK-DGGVILCDNEKG-LLKV  119 (355)
Q Consensus        51 ~~~p~~i~~d~~~g-~l~~~~~~g~i~~~~~~~g~~--------~~~~~~~~~p~~gl~~d~-~g~L~v~~~~~g-l~~~  119 (355)
                      -....++++.+.+. .|.++..+|.|..++..++..        ..+......+. .+++.+ ++.++++....| +..+
T Consensus       181 ~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~-~v~~~p~~~~~l~s~~~dg~i~i~  259 (430)
T 2xyi_A          181 QKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVE-DVAWHLLHESLFGSVADDQKLMIW  259 (430)
T ss_dssp             SSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEE-EEEECSSCTTEEEEEETTSEEEEE
T ss_pred             CCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEe-eeEEeCCCCCEEEEEeCCCeEEEE
Confidence            35678899996655 677888899999999866321        12222234466 888987 566766554444 5555


Q ss_pred             c-CC----C-eEEEcCCcCCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCC-e-EEEeecccc
Q 018474          120 T-EE----G-VEAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLK-E-TTVLHEGFY  190 (355)
Q Consensus       120 ~-~~----g-~~~~~~~~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~-~-~~~~~~~~~  190 (355)
                      + .+    . ...+......++++++.+++. ++++.+.                 .+.+..||..+. + +..+.....
T Consensus       260 d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~-----------------dg~v~vwd~~~~~~~~~~~~~h~~  322 (430)
T 2xyi_A          260 DTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSA-----------------DKTVALWDLRNLKLKLHSFESHKD  322 (430)
T ss_dssp             ETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEET-----------------TSEEEEEETTCTTSCSEEEECCSS
T ss_pred             ECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeC-----------------CCeEEEEeCCCCCCCeEEeecCCC
Confidence            5 32    2 333433336789999999884 6766433                 567888887652 2 333332334


Q ss_pred             ccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCc-----------ceeEecccCCCCcCceEECCCCC-EEEEeec
Q 018474          191 FANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAG-----------ILDAFIENLPGGPDNINLAPDGS-FWIGLIK  255 (355)
Q Consensus       191 ~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~-----------~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~~  255 (355)
                      ....++++|+++.++++....+.|..|+++.....           ............+..+.++++|. +.++...
T Consensus       323 ~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~  399 (430)
T 2xyi_A          323 EIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSE  399 (430)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEET
T ss_pred             CEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEEC
Confidence            45688999999877887777889999998542110           11111112233467788999998 6666544

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=98.12  E-value=0.0027  Score=57.02  Aligned_cols=147  Identities=12%  Similarity=0.060  Sum_probs=87.8

Q ss_pred             CCceEEEeeCCCeEEEEecCCEEEEEEcCCCee--EEee-c--cCCCcccCeEECCCCCEEEEeCCCcEE-EEcC-C---
Q 018474           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETL--VNWK-H--IDSQSLLGLTTTKDGGVILCDNEKGLL-KVTE-E---  122 (355)
Q Consensus        53 ~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~--~~~~-~--~~~~p~~gl~~d~~g~L~v~~~~~gl~-~~~~-~---  122 (355)
                      .-.++.+. .+ .|.+++.++.|..++..++..  .... .  ....+. ++++.++|+++++...++.+ .++. .   
T Consensus        16 ~v~~~~~s-~~-~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~-~v~~sp~~~~las~s~D~~v~iw~~~~~~~   92 (330)
T 2hes_X           16 KIWSFDFS-QG-ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIR-SVAWRPHTSLLAAGSFDSTVSIWAKEESAD   92 (330)
T ss_dssp             CEEEEEEE-TT-EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEE-EEEECTTSSEEEEEETTSCEEEEEC-----
T ss_pred             ceeeeccC-CC-EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEE-EEEECCCCCEEEEEeCCCcEEEEEcccCcC
Confidence            34567776 33 777888899999999876532  2222 1  123466 88999999876655454534 3332 1   


Q ss_pred             ----C--eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCC-CC---e-EEEeeccccc
Q 018474          123 ----G--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPK-LK---E-TTVLHEGFYF  191 (355)
Q Consensus       123 ----g--~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~-~~---~-~~~~~~~~~~  191 (355)
                          .  ...+......+.+++++++|++.++.+.                 .+.+..||.. .+   + ...+......
T Consensus        93 ~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~-----------------D~~v~iwd~~~~~~~~~~~~~~~~h~~~  155 (330)
T 2hes_X           93 RTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSR-----------------DKSVWIWETDESGEEYECISVLQEHSQD  155 (330)
T ss_dssp             --CCCEEEEEEC----CEEEEEECTTSCEEEEEET-----------------TSCEEEEECCTTCCCCEEEEEECCCSSC
T ss_pred             ccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeC-----------------CCEEEEEeccCCCCCeEEEEEeccCCCc
Confidence                1  2223333367889999999987776433                 4567777763 22   1 1222222234


Q ss_pred             cccEEEeCCCCEEEEEeCCCCeEEEEEeC
Q 018474          192 ANGIALSKNEDFVVVCESWKFRCRRYWLK  220 (355)
Q Consensus       192 pngi~~~~dg~~l~v~~~~~~~i~~~~~~  220 (355)
                      .+.++++|+++.+ ++....+.|..++..
T Consensus       156 v~~v~~~p~~~~l-~s~s~D~~i~iW~~~  183 (330)
T 2hes_X          156 VKHVIWHPSEALL-ASSSYDDTVRIWKDY  183 (330)
T ss_dssp             EEEEEECSSSSEE-EEEETTSCEEEEEEE
T ss_pred             eEEEEECCCCCEE-EEEcCCCeEEEEECC
Confidence            5678999999854 555556778777764

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.11  E-value=0.0033  Score=58.93  Aligned_cols=223  Identities=12%  Similarity=0.044  Sum_probs=127.6

Q ss_pred             CCCceEEEee--CCCeEEEEecCCEEEEEEcCCCeeEEe---------------------eccCCCcccCeEECCCCCE-
Q 018474           52 NHPEDVSVVV--SKGALYTATRDGWVKYFILHNETLVNW---------------------KHIDSQSLLGLTTTKDGGV-  107 (355)
Q Consensus        52 ~~p~~i~~d~--~~g~l~~~~~~g~i~~~~~~~g~~~~~---------------------~~~~~~p~~gl~~d~~g~L-  107 (355)
                      ..-.++.+.+  ++..+++++.+|.|..++..+++....                     ....+....-..+.+++++ 
T Consensus       204 ~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l  283 (464)
T 3v7d_B          204 STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIV  283 (464)
T ss_dssp             SCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEE
T ss_pred             CccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEE
Confidence            3445666663  345677788899999999866542110                     0000111001223445554 


Q ss_pred             EEEeCCCcEEEEc-CCC--eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEE
Q 018474          108 ILCDNEKGLLKVT-EEG--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV  184 (355)
Q Consensus       108 ~v~~~~~gl~~~~-~~g--~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~  184 (355)
                      +++...+.+..++ .++  +..+......+.+++++++|+..++.+.                 .+.+..||..+++...
T Consensus       284 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~-----------------dg~i~vwd~~~~~~~~  346 (464)
T 3v7d_B          284 VSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASM-----------------DTTIRIWDLENGELMY  346 (464)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEET-----------------TSCEEEEETTTTEEEE
T ss_pred             EEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeC-----------------CCcEEEEECCCCcEEE
Confidence            4454444466666 455  5555444467889999999976665433                 5678889987776543


Q ss_pred             eecc-ccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeecCCchhhHh
Q 018474          185 LHEG-FYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRA  263 (355)
Q Consensus       185 ~~~~-~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~  263 (355)
                      ...+ ......++++  ++.+ ++....+.|..|+++...  ..  +..........+.+.++|++.++...        
T Consensus       347 ~~~~h~~~v~~~~~~--~~~l-~s~s~dg~v~vwd~~~~~--~~--~~~~~~~~~~~~~~~~~~~~l~~~~d--------  411 (464)
T 3v7d_B          347 TLQGHTALVGLLRLS--DKFL-VSAAADGSIRGWDANDYS--RK--FSYHHTNLSAITTFYVSDNILVSGSE--------  411 (464)
T ss_dssp             EECCCSSCEEEEEEC--SSEE-EEEETTSEEEEEETTTCC--EE--EEEECTTCCCEEEEEECSSEEEEEET--------
T ss_pred             EEeCCCCcEEEEEEc--CCEE-EEEeCCCcEEEEECCCCc--ee--eeecCCCCccEEEEEeCCCEEEEecC--------
Confidence            3322 2223455665  4544 444567889999985422  11  11112222344567778887776543        


Q ss_pred             hhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeCCEEEEeecCCC
Q 018474          264 IQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSN  338 (355)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~  338 (355)
                                                   +.|..+|.++|+.+..+....   ...+..+..+++.+.++....+
T Consensus       412 -----------------------------g~i~iwd~~~g~~~~~~~~~~---~~~v~~v~~~~~~l~~~~~~~g  454 (464)
T 3v7d_B          412 -----------------------------NQFNIYNLRSGKLVHANILKD---ADQIWSVNFKGKTLVAAVEKDG  454 (464)
T ss_dssp             -----------------------------TEEEEEETTTCCEEESCTTTT---CSEEEEEEEETTEEEEEEEETT
T ss_pred             -----------------------------CeEEEEECCCCcEEehhhccC---CCcEEEEEecCCEEEEEEEeCC
Confidence                                         468888876788766533322   2356677777888877765443

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=98.10  E-value=0.00089  Score=69.07  Aligned_cols=184  Identities=13%  Similarity=0.073  Sum_probs=114.2

Q ss_pred             CCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCCCcEEEEc-CCC--e
Q 018474           49 GCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEKGLLKVT-EEG--V  124 (355)
Q Consensus        49 ~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~~gl~~~~-~~g--~  124 (355)
                      |.-....+++++|++..|.+++.+|.|..++..+++..........+. .+++.+ |+ |..+...+.+..++ .++  +
T Consensus        15 gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~-~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~   92 (902)
T 2oaj_A           15 GMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIK-EMRFVK-GIYLVVINAKDTVYVLSLYSQKVL   92 (902)
T ss_dssp             ECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEE-EEEEET-TTEEEEEETTCEEEEEETTTCSEE
T ss_pred             CCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEE-EEEEcC-CCEEEEEECcCeEEEEECCCCcEE
Confidence            334567899999877788889999999999886665443322234466 899988 77 44454444455556 355  4


Q ss_pred             EEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeec------------ccccc
Q 018474          125 EAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE------------GFYFA  192 (355)
Q Consensus       125 ~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~------------~~~~p  192 (355)
                      ..+... ..+..++++++|+..++...                 .|.+..||.++++...+..            .....
T Consensus        93 ~~~~~~-~~V~~v~~sp~g~~l~sgs~-----------------dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V  154 (902)
T 2oaj_A           93 TTVFVP-GKITSIDTDASLDWMLIGLQ-----------------NGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPI  154 (902)
T ss_dssp             EEEECS-SCEEEEECCTTCSEEEEEET-----------------TSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCC
T ss_pred             EEEcCC-CCEEEEEECCCCCEEEEEcC-----------------CCcEEEEECCCCccccceeccccccccccccCCCCe
Confidence            444322 56888999999965554322                 5678888887776532210            11235


Q ss_pred             ccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccC-----------------CCCcCceEECCCCCEEEEeec
Q 018474          193 NGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENL-----------------PGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       193 ngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~-----------------~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      ..++++|++...+++....+.| .|+++...  ....+....                 ......+.+.++|++.++...
T Consensus       155 ~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~  231 (902)
T 2oaj_A          155 VSIQWNPRDIGTVLISYEYVTL-TYSLVENE--IKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHE  231 (902)
T ss_dssp             CEEEEETTEEEEEEEECSSCEE-EEETTTTE--EEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEET
T ss_pred             EEEEEccCCCCEEEEEeCCCcE-EEECCCCc--eEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEEC
Confidence            6799999754455556667778 88875432  112221110                 012344678888987776654

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.09  E-value=8.1e-05  Score=78.02  Aligned_cols=178  Identities=10%  Similarity=0.016  Sum_probs=113.9

Q ss_pred             CCceEEEe-eCCCeEEEEecCCEEEEEEcCCCeeEEeeccCC-CcccCeEECCCCC-EEEEeCCCcEE-EEcC-CC-eEE
Q 018474           53 HPEDVSVV-VSKGALYTATRDGWVKYFILHNETLVNWKHIDS-QSLLGLTTTKDGG-VILCDNEKGLL-KVTE-EG-VEA  126 (355)
Q Consensus        53 ~p~~i~~d-~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~-~p~~gl~~d~~g~-L~v~~~~~gl~-~~~~-~g-~~~  126 (355)
                      ...++++. |++..+.++. ++.|+.++..+++...+..... .+. .+++. +|+ |+++.....++ .++. .+ .+.
T Consensus       297 ~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~  373 (1045)
T 1k32_A          297 SKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYV-RRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK  373 (1045)
T ss_dssp             GGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEE-EECSS-SEEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred             ccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEE-eeeEc-CCCeEEEEECCCceEEEEECCCCCceE
Confidence            46789998 8777777665 7889999987777665433333 455 66677 775 55554444677 6774 45 555


Q ss_pred             EcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccc-cccccEEEeCCCCEEE
Q 018474          127 IVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGF-YFANGIALSKNEDFVV  205 (355)
Q Consensus       127 ~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~-~~pngi~~~~dg~~l~  205 (355)
                      +......+..++++|||+..+....                 .+.++.||.++++...+.... .....++++|||+.+.
T Consensus       374 l~~~~~~~~~~~~SpDG~~la~~~~-----------------~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la  436 (1045)
T 1k32_A          374 FEENLGNVFAMGVDRNGKFAVVAND-----------------RFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIA  436 (1045)
T ss_dssp             CCCCCCSEEEEEECTTSSEEEEEET-----------------TSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEE
T ss_pred             ecCCccceeeeEECCCCCEEEEECC-----------------CCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEE
Confidence            5433356788999999964433222                 347999999888877665333 3347899999999887


Q ss_pred             EEeCCC---------CeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCC-EEEEee
Q 018474          206 VCESWK---------FRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGS-FWIGLI  254 (355)
Q Consensus       206 v~~~~~---------~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~  254 (355)
                      ++....         ..|+.+++++..   ...+. ........+.++++|+ +++++.
T Consensus       437 ~~~~~~~~~~~~~~~~~i~l~d~~~g~---~~~l~-~~~~~~~~~~~spdG~~l~~~s~  491 (1045)
T 1k32_A          437 YGFPLKHGETDGYVMQAIHVYDMEGRK---IFAAT-TENSHDYAPAFDADSKNLYYLSY  491 (1045)
T ss_dssp             EEEEECSSTTCSCCEEEEEEEETTTTE---EEECS-CSSSBEEEEEECTTSCEEEEEES
T ss_pred             EEecCccccccCCCCCeEEEEECCCCc---EEEee-CCCcccCCceEcCCCCEEEEEec
Confidence            765422         478888876432   22222 1112234467888886 555543

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=98.09  E-value=0.00041  Score=70.03  Aligned_cols=188  Identities=15%  Similarity=0.126  Sum_probs=109.5

Q ss_pred             CCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEe---eccCCCcccCeEECCC--CCEEEEeCCCc-EEEEc-C
Q 018474           49 GCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNW---KHIDSQSLLGLTTTKD--GGVILCDNEKG-LLKVT-E  121 (355)
Q Consensus        49 ~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~---~~~~~~p~~gl~~d~~--g~L~v~~~~~g-l~~~~-~  121 (355)
                      +.-..-.++++.+++..+.+++.+|.|..++..++.....   ......+. ++++.++  |+++++...+| +..++ .
T Consensus         7 gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~-~l~~s~~~~~~~l~s~s~Dg~I~vwd~~   85 (753)
T 3jro_A            7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVW-RVDWAHPKFGTILASCSYDGKVLIWKEE   85 (753)
T ss_dssp             -CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEE-EEEECCTTSCSEEEEEETTSCEEEEEEE
T ss_pred             cCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceE-EEEecCCCCCCEEEEEeCCCeEEEEECC
Confidence            3344556778887777788888999999998864433322   11233466 8888765  77655544445 55555 3


Q ss_pred             CC-e---EEEcCCcCCcccEEEccC--CcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCe---EEEeecccccc
Q 018474          122 EG-V---EAIVPDASFTNDVIAASD--GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE---TTVLHEGFYFA  192 (355)
Q Consensus       122 ~g-~---~~~~~~~~~~~~l~~d~d--G~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~---~~~~~~~~~~p  192 (355)
                      ++ .   ..+......+.+++++++  |++.++.+.                 .+.+..||..++.   ...+.......
T Consensus        86 ~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~-----------------dg~I~vwdl~~~~~~~~~~~~~~~~~v  148 (753)
T 3jro_A           86 NGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS-----------------DGKVSVVEFKENGTTSPIIIDAHAIGV  148 (753)
T ss_dssp             TTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET-----------------TSEEEEEECCSSSCCCCEEEECCSSCE
T ss_pred             CCcccccccccCCCCCeEEEEECCCCCCCEEEEEeC-----------------CCcEEEEEeecCCCcceeEeecCCCce
Confidence            44 2   222223367888999998  876665433                 5678888876552   11222222334


Q ss_pred             ccEEEeC-------------CCCEEEEEeCCCCeEEEEEeCCCCCc-ceeEecccCCCCcCceEECCC---CCEEEEeec
Q 018474          193 NGIALSK-------------NEDFVVVCESWKFRCRRYWLKGDRAG-ILDAFIENLPGGPDNINLAPD---GSFWIGLIK  255 (355)
Q Consensus       193 ngi~~~~-------------dg~~l~v~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~g~p~~i~~d~~---G~lwv~~~~  255 (355)
                      ..++++|             |++.++.+ ...+.|..|++...... ..........+....+.+.++   |++.++...
T Consensus       149 ~~l~~~p~~~~~~~~~~~~~d~~~l~sg-s~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~  227 (753)
T 3jro_A          149 NSASWAPATIEEDGEHNGTKESRKFVTG-GADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ  227 (753)
T ss_dssp             EEEEECCCC---------CGGGCCEEEE-ETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEES
T ss_pred             EEEEecCcccccccccccCCCCCEEEEE-ECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEec
Confidence            6678888             57745444 45678999988543211 111111122333456778888   766665544

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=98.09  E-value=0.0068  Score=56.56  Aligned_cols=134  Identities=12%  Similarity=0.083  Sum_probs=73.6

Q ss_pred             CCeEEEEeCCCCeEEEeeccc-cccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCC
Q 018474          169 YGQLRKYDPKLKETTVLHEGF-YFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDG  247 (355)
Q Consensus       169 ~g~l~~~dp~~~~~~~~~~~~-~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G  247 (355)
                      .+.+..||..+++........ .....+++  +++.++.+. ..+.|..|+++...  ....+. ........+..+  |
T Consensus       258 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~-~d~~i~i~d~~~~~--~~~~~~-~~~~~v~~~~~~--~  329 (445)
T 2ovr_B          258 DFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGS-LDTSIRVWDVETGN--CIHTLT-GHQSLTSGMELK--D  329 (445)
T ss_dssp             TSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEE-TTSCEEEEETTTCC--EEEEEC-CCCSCEEEEEEE--T
T ss_pred             CCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEe-CCCeEEEEECCCCC--EEEEEc-CCcccEEEEEEe--C
Confidence            567888888776543332221 12233444  777665554 56789999975432  112221 222222334443  5


Q ss_pred             CEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeC
Q 018474          248 SFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFD  327 (355)
Q Consensus       248 ~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~  327 (355)
                      ++.++....                                    +.|..+|..+++.+..+..+.+. ...++.+..++
T Consensus       330 ~~l~~~~~d------------------------------------g~i~vwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~  372 (445)
T 2ovr_B          330 NILVSGNAD------------------------------------STVKIWDIKTGQCLQTLQGPNKH-QSAVTCLQFNK  372 (445)
T ss_dssp             TEEEEEETT------------------------------------SCEEEEETTTCCEEEEECSTTSC-SSCEEEEEECS
T ss_pred             CEEEEEeCC------------------------------------CeEEEEECCCCcEEEEEccCCCC-CCCEEEEEECC
Confidence            555544331                                    35777887678888888654322 23455666655


Q ss_pred             CEEEEeecCCCeEEEeeCCCC
Q 018474          328 GNLYLASLQSNFIGILPLDGP  348 (355)
Q Consensus       328 g~L~v~~~~~~~i~~~~~~~~  348 (355)
                      +.|..++. .+.|..+++.+.
T Consensus       373 ~~l~s~~~-dg~v~iwd~~~~  392 (445)
T 2ovr_B          373 NFVITSSD-DGTVKLWDLKTG  392 (445)
T ss_dssp             SEEEEEET-TSEEEEEETTTC
T ss_pred             CEEEEEeC-CCeEEEEECCCC
Confidence            55555554 677888877654

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=98.08  E-value=0.00084  Score=60.35  Aligned_cols=178  Identities=7%  Similarity=-0.012  Sum_probs=102.9

Q ss_pred             CCceEEEeeCCCeEEEEecC---C--EEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeC--------------
Q 018474           53 HPEDVSVVVSKGALYTATRD---G--WVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDN--------------  112 (355)
Q Consensus        53 ~p~~i~~d~~~g~l~~~~~~---g--~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~--------------  112 (355)
                      ...++.+.|++..|+....+   +  .|+.++..+++...+..... .. ++++.++|+ |+++..              
T Consensus        60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~-~~~wspdg~~l~~~~~~~~~~~~~~~~~~~  137 (347)
T 2gop_A           60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IR-SLEWNEDSRKLLIVGFKRREDEDFIFEDDV  137 (347)
T ss_dssp             SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EE-EEEECTTSSEEEEEEECCCC---------C
T ss_pred             cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-cc-ceeECCCCCEEEEEEccCCCcCCcEEEccc
Confidence            45568888766666655432   2  48899988887766554333 66 888988886 555431              


Q ss_pred             -------------CCcEEEEcC-CC-e-EEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEe
Q 018474          113 -------------EKGLLKVTE-EG-V-EAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYD  176 (355)
Q Consensus       113 -------------~~gl~~~~~-~g-~-~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~d  176 (355)
                                   ...++.++. +| . +.+.. . .+.++++++|| ++++.....    .   .. .......++.+|
T Consensus       138 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~----~---~~-~~~~~~~l~~~d  206 (347)
T 2gop_A          138 PAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHRE----I---IP-QYFKFWDIYIWE  206 (347)
T ss_dssp             CCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCC----S---SC-CSSCCEEEEEEE
T ss_pred             ceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEeccc----c---cc-cccccccEEEeC
Confidence                         134777774 56 5 66554 3 67788999999 666542210    0   00 000034788898


Q ss_pred             CCCCeEEEeeccccccccEEEeCCCCEEEEEeCC-------CCeEEEEEeCCCCCcceeEecccCCCCcCc-eEECCCCC
Q 018474          177 PKLKETTVLHEGFYFANGIALSKNEDFVVVCESW-------KFRCRRYWLKGDRAGILDAFIENLPGGPDN-INLAPDGS  248 (355)
Q Consensus       177 p~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~-------~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~-i~~d~~G~  248 (355)
                        +++.+.+... . .. ..++|||+.+++....       ...|+.++ .+    +...+.........+ +.++ +| 
T Consensus       207 --~~~~~~l~~~-~-~~-~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d-~~----~~~~l~~~~~~~~~~~~~~s-dg-  274 (347)
T 2gop_A          207 --DGKEEKMFEK-V-SF-YAVDSDGERILLYGKPEKKYMSEHNKLYIYD-GK----EVMGILDEVDRGVGQAKIKD-GK-  274 (347)
T ss_dssp             --TTEEEEEEEE-E-SE-EEEEECSSCEEEEECCSSSCCCSSCEEEEEC-SS----CEEESSTTCCSEEEEEEEET-TE-
T ss_pred             --CCceEEeccC-c-ce-eeECCCCCEEEEEEccccCCccccceEEEEC-CC----ceEeccccCCcccCCccEEc-Cc-
Confidence              6776665543 2 22 2349999977766533       24788877 32    222222222222233 5667 77 


Q ss_pred             EEEEeec
Q 018474          249 FWIGLIK  255 (355)
Q Consensus       249 lwv~~~~  255 (355)
                      +++....
T Consensus       275 ~~~~~~~  281 (347)
T 2gop_A          275 VYFTLFE  281 (347)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEec
Confidence            6665543

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=98.05  E-value=0.00011  Score=73.64  Aligned_cols=132  Identities=8%  Similarity=-0.023  Sum_probs=84.5

Q ss_pred             CceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCC----CcccCeEECCCCCEE-EEeC---------CCcEEEE
Q 018474           54 PEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDS----QSLLGLTTTKDGGVI-LCDN---------EKGLLKV  119 (355)
Q Consensus        54 p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~----~p~~gl~~d~~g~L~-v~~~---------~~gl~~~  119 (355)
                      +.++.+.+ ++.++....++.|+.++..+++.+.+.....    ... .+++.+||+.. ++..         ...++.+
T Consensus        18 ~~~~~~s~-dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~   95 (719)
T 1z68_A           18 TFFPNWIS-GQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNAS-NYGLSPDRQFVYLESDYSKLWRYSYTATYYIY   95 (719)
T ss_dssp             CCCCEESS-SSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCS-EEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             CCccEECC-CCeEEEEcCCCCEEEEEcCCCcEEEEEcccccccccee-eEEECCCCCeEEEEecCceeEEeecceEEEEE
Confidence            44777884 4466556678899999998888766543221    256 78899999843 3432         1346666


Q ss_pred             cC-CC-e---EEEcCCcCCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccc----
Q 018474          120 TE-EG-V---EAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGF----  189 (355)
Q Consensus       120 ~~-~g-~---~~~~~~~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~----  189 (355)
                      +. +| .   +.+.   ..+.+++++|||+ |.++.                   .+.|+.+|..+++...+....    
T Consensus        96 d~~~g~~~~~~~l~---~~~~~~~~SPDG~~la~~~-------------------~~~i~~~~~~~g~~~~l~~~~~~~~  153 (719)
T 1z68_A           96 DLSNGEFVRGNELP---RPIQYLCWSPVGSKLAYVY-------------------QNNIYLKQRPGDPPFQITFNGRENK  153 (719)
T ss_dssp             ETTTTEECCSSCCC---SSBCCEEECSSTTCEEEEE-------------------TTEEEEESSTTSCCEECCCCCBTTT
T ss_pred             ECCCCccccceecC---cccccceECCCCCEEEEEE-------------------CCeEEEEeCCCCCcEEEecCCCcCC
Confidence            64 55 4   3332   3578899999994 55542                   236888888777654443211    


Q ss_pred             ---------------cccccEEEeCCCCEEEEEeC
Q 018474          190 ---------------YFANGIALSKNEDFVVVCES  209 (355)
Q Consensus       190 ---------------~~pngi~~~~dg~~l~v~~~  209 (355)
                                     ....+++++|||+.|+++..
T Consensus       154 v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~  188 (719)
T 1z68_A          154 IFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEF  188 (719)
T ss_dssp             EEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEE
T ss_pred             eEcccccceeeeecccCcccEEECCCCCEEEEEEE
Confidence                           11247999999998877653

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.03  E-value=0.0046  Score=61.62  Aligned_cols=163  Identities=10%  Similarity=0.010  Sum_probs=85.9

Q ss_pred             eEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccC-C-----CcccCeEECCCCCEEEEeCC------CcEEEEc-CC
Q 018474           56 DVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHID-S-----QSLLGLTTTKDGGVILCDNE------KGLLKVT-EE  122 (355)
Q Consensus        56 ~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~-~-----~p~~gl~~d~~g~L~v~~~~------~gl~~~~-~~  122 (355)
                      +++.+  ++.+|+++.++.|+.+|.++|+..--.... .     .......++ ++.+|++...      +.++.+| .+
T Consensus       123 ~~a~~--~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~-~~~v~v~~~~~~~~~~g~v~a~D~~t  199 (677)
T 1kb0_A          123 GVALW--KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVF-KGKVIIGNGGAEYGVRGYITAYDAET  199 (677)
T ss_dssp             CCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTT
T ss_pred             CceEE--CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEE-CCEEEEEecccccCCCCEEEEEECCC
Confidence            45555  778999999999999999999754222221 1     111012232 6789987652      4588888 47


Q ss_pred             C-eE-EEcC-Cc-------------------------------CCcccEEEccC-CcEEEEeCCCC-CCCcccccccccc
Q 018474          123 G-VE-AIVP-DA-------------------------------SFTNDVIAASD-GTLYFTVASTK-YTPTDFYKDMAEG  166 (355)
Q Consensus       123 g-~~-~~~~-~~-------------------------------~~~~~l~~d~d-G~ly~~d~~~~-~~~~~~~~~~~~~  166 (355)
                      | .. .+.. ..                               .....+++|++ +.||++..... +.........-..
T Consensus       200 G~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~  279 (677)
T 1kb0_A          200 GERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDN  279 (677)
T ss_dssp             CCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCC
T ss_pred             CcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCC
Confidence            7 32 2211 10                               01134678876 47888765411 1000000000000


Q ss_pred             CCCCeEEEEeCCCCeEEEeecc----------ccccccEEEeCCCC--EEEEEeCCCCeEEEEEeCC
Q 018474          167 KPYGQLRKYDPKLKETTVLHEG----------FYFANGIALSKNED--FVVVCESWKFRCRRYWLKG  221 (355)
Q Consensus       167 ~~~g~l~~~dp~~~~~~~~~~~----------~~~pngi~~~~dg~--~l~v~~~~~~~i~~~~~~~  221 (355)
                      ...+.|+.+|+++|+.....+.          ...|.-+....||+  .+++..+..+.|+.+|.+.
T Consensus       280 ~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~t  346 (677)
T 1kb0_A          280 LYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTN  346 (677)
T ss_dssp             TTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTT
T ss_pred             eeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCC
Confidence            1124699999999987654321          11222222333662  2444445566777777643

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.01  E-value=0.00061  Score=62.23  Aligned_cols=179  Identities=12%  Similarity=0.027  Sum_probs=99.9

Q ss_pred             EEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCC--cccC------------------eEECCCCC-EEEE-----
Q 018474           57 VSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQ--SLLG------------------LTTTKDGG-VILC-----  110 (355)
Q Consensus        57 i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~--p~~g------------------l~~d~~g~-L~v~-----  110 (355)
                      +.+.|++..|+....++.|+.++..+++.+.+......  +. |                  ..+.++|+ +.++     
T Consensus        86 ~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~-g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~  164 (396)
T 3c5m_A           86 GFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGY-GTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHT  164 (396)
T ss_dssp             CEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEE-EEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHT
T ss_pred             ceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCC-CCEEEeccCCccccccccccccCCCCcceeeeeeccC
Confidence            67887777787777777899999988776554332110  11 1                  12233443 1111     


Q ss_pred             eCCCcEEEEc-CCC-eEEEcCCcCCcccEEEcc-CCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee
Q 018474          111 DNEKGLLKVT-EEG-VEAIVPDASFTNDVIAAS-DGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH  186 (355)
Q Consensus       111 ~~~~gl~~~~-~~g-~~~~~~~~~~~~~l~~d~-dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~  186 (355)
                      .....++.++ .++ .+.+......+.++.+++ +|. |++..... .           ......|+.+|.++++.+.+.
T Consensus       165 ~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~-~-----------~~~~~~l~~~d~~~~~~~~l~  232 (396)
T 3c5m_A          165 NPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGP-H-----------DLVDARMWLVNEDGSNVRKIK  232 (396)
T ss_dssp             CCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSC-S-----------SSCSCCCEEEETTSCCCEESS
T ss_pred             CCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCC-C-----------CCCCceEEEEECCCCceeEee
Confidence            1223477777 355 544443335577788988 674 66653220 0           001246888998777655554


Q ss_pred             cc--ccccccEEEeCCCCEEEEEeC--CCCe--EEEEEeCCCCCcceeEecccCCCCcCceEECC-CCCEEEEee
Q 018474          187 EG--FYFANGIALSKNEDFVVVCES--WKFR--CRRYWLKGDRAGILDAFIENLPGGPDNINLAP-DGSFWIGLI  254 (355)
Q Consensus       187 ~~--~~~pngi~~~~dg~~l~v~~~--~~~~--i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~-~G~lwv~~~  254 (355)
                      ..  ......++++|||+.+++...  ....  |+++++++..   .+.+. ..++. . ..+.+ +|++++...
T Consensus       233 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~---~~~l~-~~~~~-~-~~~s~~dg~~l~~~~  301 (396)
T 3c5m_A          233 EHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLE---NEEVM-VMPPC-S-HLMSNFDGSLMVGDG  301 (396)
T ss_dssp             CCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCC---EEEEE-ECCSE-E-EEEECSSSSEEEEEE
T ss_pred             ccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCC---eEEee-eCCCC-C-CCccCCCCceEEEec
Confidence            32  123456799999997666532  2233  8888875432   22222 22222 2 66777 898666543

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=98.00  E-value=0.00074  Score=63.21  Aligned_cols=247  Identities=12%  Similarity=0.071  Sum_probs=133.7

Q ss_pred             CCCceEEEeeC-CCeEEEEecCCEEEEEEcCCCeeEEeeccC---CCcccCeEECCCCCEEEEeCCCc-EEEEcCCC--e
Q 018474           52 NHPEDVSVVVS-KGALYTATRDGWVKYFILHNETLVNWKHID---SQSLLGLTTTKDGGVILCDNEKG-LLKVTEEG--V  124 (355)
Q Consensus        52 ~~p~~i~~d~~-~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~---~~p~~gl~~d~~g~L~v~~~~~g-l~~~~~~g--~  124 (355)
                      ..-.+|++.|. +..|+.++.||.|..+|.+++....+....   .... .++++++|+++++....| +..++.++  +
T Consensus       165 ~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~  243 (435)
T 4e54_B          165 GSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFC-SLDVSASSRMVVTGDNVGNVILLNMDGKEL  243 (435)
T ss_dssp             CCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCC-CEEEETTTTEEEEECSSSBEEEEESSSCBC
T ss_pred             CCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEE-EEEECCCCCEEEEEeCCCcEeeeccCccee
Confidence            44578899863 557888888999999999776665543321   2345 788889998776655545 55555444  4


Q ss_pred             EEEcCCcCCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEE-Eee---ccccccccEEEeC
Q 018474          125 EAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT-VLH---EGFYFANGIALSK  199 (355)
Q Consensus       125 ~~~~~~~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~-~~~---~~~~~pngi~~~~  199 (355)
                      ..+......++++++++++. +.++.+.                 .+.+..||..+.+.. .+.   ......+.++++|
T Consensus       244 ~~~~~h~~~v~~v~~~p~~~~~~~s~s~-----------------d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~sp  306 (435)
T 4e54_B          244 WNLRMHKKKVTHVALNPCCDWFLATASV-----------------DQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSP  306 (435)
T ss_dssp             CCSBCCSSCEEEEEECTTCSSEEEEEET-----------------TSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCT
T ss_pred             EEEecccceEEeeeecCCCceEEEEecC-----------------cceeeEEecccccccceEEEeeeccccccceeECC
Confidence            33333336788899999874 5554322                 344556665443211 111   0112235678999


Q ss_pred             CCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCC-----CCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHH
Q 018474          200 NEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLP-----GGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELL  274 (355)
Q Consensus       200 dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-----g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~  274 (355)
                      ||+.|+.+ ...+.|..|++.....  ...+.....     ..+-.....+++.+.+..........             
T Consensus       307 dg~~l~s~-~~D~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------------  370 (435)
T 4e54_B          307 DGARLLTT-DQKSEIRVYSASQWDC--PLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFK-------------  370 (435)
T ss_dssp             TSSEEEEE-ESSSCEEEEESSSSSS--EEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSC-------------
T ss_pred             CCCeeEEE-cCCCEEEEEECCCCcc--ceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeE-------------
Confidence            99966554 4567898898754221  111111100     01222345566655444332110000             


Q ss_pred             HhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEE-EEe-CCEEEEeecCCCeEEEeeCCC
Q 018474          275 DAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSA-AEF-DGNLYLASLQSNFIGILPLDG  347 (355)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~-~~~-~g~L~v~~~~~~~i~~~~~~~  347 (355)
                                 .........|..+|..+|+.+..+..+...   .+..+ ... +|++.+++. .+.|..-++..
T Consensus       371 -----------~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~---~v~s~~~fspdg~~lasg~-d~~i~iW~~~~  430 (435)
T 4e54_B          371 -----------SCTPYELRTIDVFDGNSGKMMCQLYDPESS---GISSLNEFNPMGDTLASAM-GYHILIWSQQE  430 (435)
T ss_dssp             -----------CSSTTCCCCEEEECSSSCCEEEEECCSSCC---CCCCEEEECTTSSCEEEEC-SSEEEECCCC-
T ss_pred             -----------EEEecCCCEEEEEECCCCcEEEEEeCCCCC---cEEEEEEECCCCCEEEEEc-CCcEEEEECCc
Confidence                       000122234777787678877776543321   23333 233 466656554 56777666544

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=97.97  E-value=0.00066  Score=60.99  Aligned_cols=200  Identities=12%  Similarity=0.011  Sum_probs=112.2

Q ss_pred             CCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEE--CCCCCEEEEeCCCc-EEEEc-CCC--e
Q 018474           51 VNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTT--TKDGGVILCDNEKG-LLKVT-EEG--V  124 (355)
Q Consensus        51 ~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~--d~~g~L~v~~~~~g-l~~~~-~~g--~  124 (355)
                      -....++++.+++..|++++.+|.|..+|..+++..........+. ++++  +++++++++...+| +..++ .++  +
T Consensus        86 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~  164 (368)
T 3mmy_A           86 TGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVK-TIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPM  164 (368)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEE-EEEEEECSSCEEEEEEETTSEEEEECSSCSSCS
T ss_pred             cCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceE-EEEEEeCCCCCEEEEccCCCcEEEEECCCCcEE
Confidence            3456788898767778889999999999998887766544445567 8888  88887555444444 55566 344  4


Q ss_pred             EEEcCCc-------CCcccEEEccCCcEEEEeCCCCC------------CCcc---------ccccccccCCCCeEEEEe
Q 018474          125 EAIVPDA-------SFTNDVIAASDGTLYFTVASTKY------------TPTD---------FYKDMAEGKPYGQLRKYD  176 (355)
Q Consensus       125 ~~~~~~~-------~~~~~l~~d~dG~ly~~d~~~~~------------~~~~---------~~~~~~~~~~~g~l~~~d  176 (355)
                      ..+....       ....-++...++.+.+-+.....            ....         ....+..+...+.+..||
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~  244 (368)
T 3mmy_A          165 MVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHY  244 (368)
T ss_dssp             EEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEE
T ss_pred             EEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEe
Confidence            4433221       11122233334444433221100            0000         000133445566777777


Q ss_pred             CCCCeE----EEeecccc------------ccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCc
Q 018474          177 PKLKET----TVLHEGFY------------FANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDN  240 (355)
Q Consensus       177 p~~~~~----~~~~~~~~------------~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~  240 (355)
                      .+....    ..+.....            ....++++||++.++.+. ..+.|..|+++...  ....+. ...+....
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~-~dg~i~iwd~~~~~--~~~~~~-~~~~~v~~  320 (368)
T 3mmy_A          245 INPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVG-SDGRFSFWDKDART--KLKTSE-QLDQPISA  320 (368)
T ss_dssp             SSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEE-TTSCEEEEETTTTE--EEEECC-CCSSCEEE
T ss_pred             cCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEc-cCCeEEEEECCCCc--EEEEec-CCCCCceE
Confidence            655421    11111111            356789999998665554 56789999985321  122221 22334566


Q ss_pred             eEECCCCCEEEEeec
Q 018474          241 INLAPDGSFWIGLIK  255 (355)
Q Consensus       241 i~~d~~G~lwv~~~~  255 (355)
                      +.++++|++.++...
T Consensus       321 ~~~s~~g~~l~~~s~  335 (368)
T 3mmy_A          321 CCFNHNGNIFAYASS  335 (368)
T ss_dssp             EEECTTSSCEEEEEC
T ss_pred             EEECCCCCeEEEEec
Confidence            889999986666544

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=97.97  E-value=0.005  Score=54.22  Aligned_cols=185  Identities=13%  Similarity=0.026  Sum_probs=101.0

Q ss_pred             CCceEEEeeC--CCeEEEEecCCEEEEEEcCCCeeEE---eeccCCCcccCeEECCC--CCEEEEeCCCc-EEEEc-CCC
Q 018474           53 HPEDVSVVVS--KGALYTATRDGWVKYFILHNETLVN---WKHIDSQSLLGLTTTKD--GGVILCDNEKG-LLKVT-EEG  123 (355)
Q Consensus        53 ~p~~i~~d~~--~g~l~~~~~~g~i~~~~~~~g~~~~---~~~~~~~p~~gl~~d~~--g~L~v~~~~~g-l~~~~-~~g  123 (355)
                      .-.++++.++  +..|..++.||.|..+|..+++...   +......+. .+++.++  |.++++...++ +..++ .++
T Consensus        55 ~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~-~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~  133 (297)
T 2pm7_B           55 PVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVN-SVQWAPHEYGPMLLVASSDGKVSVVEFKEN  133 (297)
T ss_dssp             CEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEE-EEEECCGGGCSEEEEEETTSEEEEEEBCSS
T ss_pred             CeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCcee-EEEeCcCCCCcEEEEEECCCcEEEEEecCC
Confidence            3456777532  5667788899999999997774322   211223456 7888775  66555444445 44444 222


Q ss_pred             ----eEEEcCCcCCcccEEEccCC-------------cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCe--EE-
Q 018474          124 ----VEAIVPDASFTNDVIAASDG-------------TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE--TT-  183 (355)
Q Consensus       124 ----~~~~~~~~~~~~~l~~d~dG-------------~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~--~~-  183 (355)
                          ...+......++.+.+++++             +++++.+                 ..+.+..||..+++  .. 
T Consensus       134 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs-----------------~D~~v~lwd~~~~~~~~~~  196 (297)
T 2pm7_B          134 GTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG-----------------ADNLVKIWKYNSDAQTYVL  196 (297)
T ss_dssp             SCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEE-----------------TTSCEEEEEEETTTTEEEE
T ss_pred             CceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEc-----------------CCCcEEEEEEcCCCceEEE
Confidence                22232223567777887763             3343322                 24456566544432  11 


Q ss_pred             --EeeccccccccEEEeCCC--CEEEEEeCCCCeEEEEEeCCCCCc-ceeEec-ccCCCCcCceEECCCCCEEEEeec
Q 018474          184 --VLHEGFYFANGIALSKNE--DFVVVCESWKFRCRRYWLKGDRAG-ILDAFI-ENLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       184 --~~~~~~~~pngi~~~~dg--~~l~v~~~~~~~i~~~~~~~~~~~-~~~~~~-~~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                        .+.......+.++++|++  ..++++....+.|..++++..... ....+. ...+.....+.++++|++.++...
T Consensus       197 ~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~  274 (297)
T 2pm7_B          197 ESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG  274 (297)
T ss_dssp             EEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEET
T ss_pred             EEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcC
Confidence              222122335789999986  346666667788888888643211 111111 112222334678888887666544

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=97.97  E-value=0.00041  Score=65.81  Aligned_cols=192  Identities=11%  Similarity=0.020  Sum_probs=101.5

Q ss_pred             CCCceEEEeeC---CCeEEEEec---C----------CEEEEEEcCCC--------eeEEeec----c-CCCcccCeEEC
Q 018474           52 NHPEDVSVVVS---KGALYTATR---D----------GWVKYFILHNE--------TLVNWKH----I-DSQSLLGLTTT  102 (355)
Q Consensus        52 ~~p~~i~~d~~---~g~l~~~~~---~----------g~i~~~~~~~g--------~~~~~~~----~-~~~p~~gl~~d  102 (355)
                      .++-+|+++|+   ++.||+...   +          .+|.|+....+        +.+.+..    . ..... .|+++
T Consensus        69 ~Gllgia~~P~f~~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~-~l~fg  147 (463)
T 2wg3_C           69 RGLLSLAFHPNYKKNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGG-QLLFG  147 (463)
T ss_dssp             CSEEEEEECTTHHHHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEE-EEEEC
T ss_pred             CcceeeEeCCCCcCCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCC-cEeEC
Confidence            46778999953   578998632   1          27878776421        1122211    1 12244 68999


Q ss_pred             CCCCEEEEeCC------------------CcEEEEcCCC-e---------------------EEEcCCcCCcccEEEccC
Q 018474          103 KDGGVILCDNE------------------KGLLKVTEEG-V---------------------EAIVPDASFTNDVIAASD  142 (355)
Q Consensus       103 ~~g~L~v~~~~------------------~gl~~~~~~g-~---------------------~~~~~~~~~~~~l~~d~d  142 (355)
                      +||.|||+...                  +.|+|++++| -                     ++++.....|.++++|+.
T Consensus       148 pDG~LYv~~Gd~~~~~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~  227 (463)
T 2wg3_C          148 PDGFLYIILGDGMITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRH  227 (463)
T ss_dssp             TTSCEEEEECCTTCCHHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESS
T ss_pred             CCCcEEEEeCCCCCCCCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCC
Confidence            99999998532                  1288888543 1                     223333378999999986


Q ss_pred             -----C--cEEEEeCCCCCCCccccccccccCCCC---eEEEEeCCCCeEEEeeccccccccEEEeC-------CCCEEE
Q 018474          143 -----G--TLYFTVASTKYTPTDFYKDMAEGKPYG---QLRKYDPKLKETTVLHEGFYFANGIALSK-------NEDFVV  205 (355)
Q Consensus       143 -----G--~ly~~d~~~~~~~~~~~~~~~~~~~~g---~l~~~dp~~~~~~~~~~~~~~pngi~~~~-------dg~~l~  205 (355)
                           |  .+|.+|........+....+.++...|   -++.|.+..         ...|.|+++..       .|+ ++
T Consensus       228 tg~~~G~l~~~~~D~~G~~~~~~ei~~i~~G~~yG~~~P~~~~~~~~---------g~Ap~G~~~Y~G~~fP~~~g~-~f  297 (463)
T 2wg3_C          228 PTDININLTILCSDSNGKNRSSARILQIIKGKDYESEPSLLEFKPFS---------NGPLVGGFVYRGCQSERLYGS-YV  297 (463)
T ss_dssp             CSSTTCSEEEEEECC------CEEEEEEC----CCSCCCCEECCC-------------CEEEEEECCCSSCTTTTTC-EE
T ss_pred             CCCcccceEEEecccCCCCCCCCeEeeeccCCCCCCCCCeEEeeCCC---------CccccceEEEeCCCChhhcce-EE
Confidence                 5  456677421100011112222221111   133333210         02345555543       233 67


Q ss_pred             EEeCCCCeEEEEEeCCCC-CcceeEec-c-------cCCCCcCceEECCCCCEEEEeec
Q 018474          206 VCESWKFRCRRYWLKGDR-AGILDAFI-E-------NLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       206 v~~~~~~~i~~~~~~~~~-~~~~~~~~-~-------~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      +++.. ++|+++.++... ....+.+. .       ...+.|.++.+++||.|||++..
T Consensus       298 ~~~~~-g~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~~v~~~pdG~Lyv~~~~  355 (463)
T 2wg3_C          298 FGDRN-GNFLTLQQSPVTKQWQEKPLCLGTSGSCRGYFSGHILGFGEDELGEVYILSSS  355 (463)
T ss_dssp             EEETT-SCEEEEEC-----CCEEEEECEEETTSSCSCCCSEEEEEEECTTCCEEEEEES
T ss_pred             EecCC-CcEEEEEeCCCCceeeEEEeecCCcccccccccCcceEEEECCCCCEEEEecc
Confidence            77765 789999875432 22222221 1       12345788999999999999964

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=97.95  E-value=0.00025  Score=70.86  Aligned_cols=160  Identities=8%  Similarity=0.012  Sum_probs=89.2

Q ss_pred             CceEEEeeCCCeEEEEec---------CCEEEEEEcCCCee---EEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEcC
Q 018474           54 PEDVSVVVSKGALYTATR---------DGWVKYFILHNETL---VNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE  121 (355)
Q Consensus        54 p~~i~~d~~~g~l~~~~~---------~g~i~~~~~~~g~~---~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~  121 (355)
                      ..++++.|++..|.++..         ++.|+.+|..+++.   ..+   ..... .+++.+||+..+....+.|+.++.
T Consensus        62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~-~~~~SPDG~~la~~~~~~i~~~~~  137 (719)
T 1z68_A           62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQ-YLCWSPVGSKLAYVYQNNIYLKQR  137 (719)
T ss_dssp             CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBC-CEEECSSTTCEEEEETTEEEEESS
T ss_pred             eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---Ccccc-cceECCCCCEEEEEECCeEEEEeC
Confidence            568899977777766654         57899999988876   433   23466 889999997444333556778774


Q ss_pred             -CC-eEEEcCCc-------------------CCcccEEEccCCc-EEEEeCCCCCCCccccc------------c---cc
Q 018474          122 -EG-VEAIVPDA-------------------SFTNDVIAASDGT-LYFTVASTKYTPTDFYK------------D---MA  164 (355)
Q Consensus       122 -~g-~~~~~~~~-------------------~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~------------~---~~  164 (355)
                       +| ...+....                   ....+++++|||+ |.++.... -.+..+..            .   ..
T Consensus       138 ~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~-~~~~~~~~~~~~~~~~~~~~~~~yp~  216 (719)
T 1z68_A          138 PGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFND-TDIPVIAYSYYGDEQYPRTINIPYPK  216 (719)
T ss_dssp             TTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEEC-TTSCEEEEEECCSSSSCEEEEEECCB
T ss_pred             CCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECC-CCCceEEeeccCCCCCccceeecCCC
Confidence             55 44443211                   1125799999995 54432110 00000000            0   00


Q ss_pred             cc--CCCCeEEEEeCCCCeEE---Eee------ccccccccEEEeCCCCEEEEE-eCCC--CeEEEEE
Q 018474          165 EG--KPYGQLRKYDPKLKETT---VLH------EGFYFANGIALSKNEDFVVVC-ESWK--FRCRRYW  218 (355)
Q Consensus       165 ~~--~~~g~l~~~dp~~~~~~---~~~------~~~~~pngi~~~~dg~~l~v~-~~~~--~~i~~~~  218 (355)
                      .+  .....++.+|.++++..   .+.      ........++++||++.++.. +...  ..|+.++
T Consensus       217 ~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d  284 (719)
T 1z68_A          217 AGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICD  284 (719)
T ss_dssp             TTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEE
T ss_pred             CCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEc
Confidence            01  12236888888776531   111      111223568899997644432 2221  3488888

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=97.94  E-value=4.3e-05  Score=70.44  Aligned_cols=141  Identities=16%  Similarity=0.128  Sum_probs=61.4

Q ss_pred             eEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEe-CCCcEEEEcC-CC--eEEEcCCc
Q 018474           56 DVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCD-NEKGLLKVTE-EG--VEAIVPDA  131 (355)
Q Consensus        56 ~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~-~~~gl~~~~~-~g--~~~~~~~~  131 (355)
                      +.+++  ++.+|+++.+|.|+.+|.++|+..--... +... +..+-.+|++|++. ..+.++.++. +|  +..+....
T Consensus         4 sP~v~--~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~-s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~   79 (369)
T 2hz6_A            4 TVTLP--ETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVL-QVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTI   79 (369)
T ss_dssp             ----C--TTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSC-CCC-----CCEEECTTTCCEEEC-----CCSEECSCCH
T ss_pred             CCeee--CCEEEEEcCCCEEEEEECCCCCEEEEecC-CCce-ecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccC
Confidence            34454  88999999999999999989976522222 3333 33333467777764 4456888884 66  33322211


Q ss_pred             -CCc-ccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeC
Q 018474          132 -SFT-NDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCES  209 (355)
Q Consensus       132 -~~~-~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~  209 (355)
                       ... ...++..++.+|++.                  ..+.++.+|+++|+.......   +.....+|+++.+|++. 
T Consensus        80 ~~~~~~sp~~~~~~~v~~g~------------------~dg~v~a~D~~tG~~~w~~~~---~~~~~~~p~~~~v~~~~-  137 (369)
T 2hz6_A           80 PELVQASPCRSSDGILYMGK------------------KQDIWYVIDLLTGEKQQTLSS---AFADSLSPSTSLLYLGR-  137 (369)
T ss_dssp             HHHHTTCSCC-----CCCCE------------------EEEEEEEECCC-------------------------EEEEE-
T ss_pred             ccccccCceEecCCEEEEEe------------------CCCEEEEEECCCCcEEEEecC---CCcccccccCCEEEEEe-
Confidence             000 111222345555432                  245799999998876433221   11234556777777764 


Q ss_pred             CCCeEEEEEeCCC
Q 018474          210 WKFRCRRYWLKGD  222 (355)
Q Consensus       210 ~~~~i~~~~~~~~  222 (355)
                      ..+.|..++.+..
T Consensus       138 ~dg~v~a~d~~tG  150 (369)
T 2hz6_A          138 TEYTITMYDTKTR  150 (369)
T ss_dssp             EEEEEECCCSSSS
T ss_pred             cCCEEEEEECCCC
Confidence            3467888887543

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=97.91  E-value=0.0012  Score=61.53  Aligned_cols=151  Identities=9%  Similarity=0.118  Sum_probs=90.2

Q ss_pred             CCCceEEEeeCCCeEEEEecCCEEEEEEcC---CCeeEEeec-------------cCCCcccCeE--ECCCCCEEEEeCC
Q 018474           52 NHPEDVSVVVSKGALYTATRDGWVKYFILH---NETLVNWKH-------------IDSQSLLGLT--TTKDGGVILCDNE  113 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~---~g~~~~~~~-------------~~~~p~~gl~--~d~~g~L~v~~~~  113 (355)
                      ....++++.+++..|++++.+|.|..++..   +++......             ...... .+.  ..+++.++++...
T Consensus       112 ~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~  190 (437)
T 3gre_A          112 STVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAV-RMRAFVNEEKSLLVALTN  190 (437)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEE-EEEEEECSSCEEEEEEET
T ss_pred             CCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCce-EEEEEEcCCCCEEEEEeC
Confidence            456788998667778889999999888773   343222111             111222 333  3456765554434


Q ss_pred             -CcEEEEc-CCC--eEEEcC--CcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee-
Q 018474          114 -KGLLKVT-EEG--VEAIVP--DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-  186 (355)
Q Consensus       114 -~gl~~~~-~~g--~~~~~~--~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~-  186 (355)
                       +.+..++ .++  +..+..  ....+.+++++++|.+.++.+.                 .+.+..||..+++..... 
T Consensus       191 d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-----------------dg~i~iwd~~~~~~~~~~~  253 (437)
T 3gre_A          191 LSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTT-----------------RGIIDIWDIRFNVLIRSWS  253 (437)
T ss_dssp             TSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEET-----------------TSCEEEEETTTTEEEEEEB
T ss_pred             CCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcC-----------------CCeEEEEEcCCccEEEEEe
Confidence             4455666 455  555544  2367899999999977665433                 456888888776653322 


Q ss_pred             -ccccccccEEEe----CCCCEEEEEeCCCCeEEEEEeCC
Q 018474          187 -EGFYFANGIALS----KNEDFVVVCESWKFRCRRYWLKG  221 (355)
Q Consensus       187 -~~~~~pngi~~~----~dg~~l~v~~~~~~~i~~~~~~~  221 (355)
                       ........++++    +|++ ++++....+.|..|+++.
T Consensus       254 ~~~~~~v~~~~~~~~~s~~~~-~l~s~~~dg~i~iwd~~~  292 (437)
T 3gre_A          254 FGDHAPITHVEVCQFYGKNSV-IVVGGSSKTFLTIWNFVK  292 (437)
T ss_dssp             CTTCEEEEEEEECTTTCTTEE-EEEEESTTEEEEEEETTT
T ss_pred             cCCCCceEEEEeccccCCCcc-EEEEEcCCCcEEEEEcCC
Confidence             222223456444    5565 555555667788888753

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=97.89  E-value=0.00077  Score=62.45  Aligned_cols=179  Identities=12%  Similarity=0.083  Sum_probs=106.4

Q ss_pred             CCCceEEEee-CCCeEEEEecCC----EEEEEEcCCCeeEEeeccC--------------CCcccCeEECC---CCCEEE
Q 018474           52 NHPEDVSVVV-SKGALYTATRDG----WVKYFILHNETLVNWKHID--------------SQSLLGLTTTK---DGGVIL  109 (355)
Q Consensus        52 ~~p~~i~~d~-~~g~l~~~~~~g----~i~~~~~~~g~~~~~~~~~--------------~~p~~gl~~d~---~g~L~v  109 (355)
                      ....+|++|+ +.+.+|+++..|    .|++.+.....++.+....              .+.. ++++|+   .++||+
T Consensus        55 ~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~-~l~~~~~~~~~~l~~  133 (394)
T 3b7f_A           55 HTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVF-WLTPGHASEPGTWYA  133 (394)
T ss_dssp             SEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEE-EEEECCTTSTTCEEE
T ss_pred             CceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCccccCCCccccccccccccee-EEEeCCCCCCCEEEE
Confidence            4567899995 367899998877    7888765344566543210              1234 577884   688999


Q ss_pred             EeCCCcEEEEcCCC--eEEEcCC-------------------cCCcccEEEcc--CCcEEEEeCCCCCCCcccccccccc
Q 018474          110 CDNEKGLLKVTEEG--VEAIVPD-------------------ASFTNDVIAAS--DGTLYFTVASTKYTPTDFYKDMAEG  166 (355)
Q Consensus       110 ~~~~~gl~~~~~~g--~~~~~~~-------------------~~~~~~l~~d~--dG~ly~~d~~~~~~~~~~~~~~~~~  166 (355)
                      +...++|++.+..|  .+.+...                   ...+.+|++|+  .++||++..                
T Consensus       134 g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~----------------  197 (394)
T 3b7f_A          134 GTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMS----------------  197 (394)
T ss_dssp             EEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEE----------------
T ss_pred             EecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEEC----------------
Confidence            88777899887554  4444210                   02345788886  357998743                


Q ss_pred             CCCCeEEEEeCCCCeEEEeecccc-------------ccccEEEeCC-CCEEEEEeCCCCeEEEEEeCCCCCcceeEecc
Q 018474          167 KPYGQLRKYDPKLKETTVLHEGFY-------------FANGIALSKN-EDFVVVCESWKFRCRRYWLKGDRAGILDAFIE  232 (355)
Q Consensus       167 ~~~g~l~~~dp~~~~~~~~~~~~~-------------~pngi~~~~d-g~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~  232 (355)
                        .+++++.+..+..++.+.....             ....|+++++ ...+|+..  .++|++.+-.+.   +.+.+..
T Consensus       198 --~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~--~~gl~~s~D~G~---tW~~~~~  270 (394)
T 3b7f_A          198 --SGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN--HCGIYRMDRREG---VWKRIGD  270 (394)
T ss_dssp             --TBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEE--TTEEEEEETTTT---EEECGGG
T ss_pred             --CCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEc--CCeEEEeCCCCC---cceECCC
Confidence              2468877665566665543211             1245778875 35688765  367887764332   2222221


Q ss_pred             cCCC----CcCceEEC--CCCCEEEEee
Q 018474          233 NLPG----GPDNINLA--PDGSFWIGLI  254 (355)
Q Consensus       233 ~~~g----~p~~i~~d--~~G~lwv~~~  254 (355)
                      .++.    +...+.+|  ..+.+|+++.
T Consensus       271 ~l~~~~~~~~~~i~~~p~~~~~l~~~t~  298 (394)
T 3b7f_A          271 AMPREVGDIGFPIVVHQRDPRTVWVFPM  298 (394)
T ss_dssp             GSCTTTCSCEEEEEECSSCTTCEEEEEC
T ss_pred             CCCCCCccceEEEEECCCCCCEEEEEec
Confidence            2221    11235666  4578999874

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=97.88  E-value=0.011  Score=51.86  Aligned_cols=183  Identities=13%  Similarity=0.116  Sum_probs=101.7

Q ss_pred             CCCceEEEeeCCCeEEEEecCCEEEEEEcCCC--ee-EEeeccCCCcccCeEECC--CCCEEEEeCCCcEEEE-c-CCC-
Q 018474           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNE--TL-VNWKHIDSQSLLGLTTTK--DGGVILCDNEKGLLKV-T-EEG-  123 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g--~~-~~~~~~~~~p~~gl~~d~--~g~L~v~~~~~gl~~~-~-~~g-  123 (355)
                      ..-.++++++++..|.+++.++.|..++..++  +. ..+....+.+. ++++.+  +|+++++...++.+++ + .++ 
T Consensus        10 ~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~-~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~   88 (297)
T 2pm7_B           10 EMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVW-RVDWAHPKFGTILASCSYDGKVMIWKEENGR   88 (297)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEE-EEEECCGGGCSEEEEEETTTEEEEEEBSSSC
T ss_pred             CceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeE-EEEecCCCcCCEEEEEcCCCEEEEEEcCCCc
Confidence            34467889877778888899999999998543  22 22222233456 788854  4776665545554444 4 343 


Q ss_pred             ---eEEEcCCcCCcccEEEccC--CcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCe---EEEeeccccccccE
Q 018474          124 ---VEAIVPDASFTNDVIAASD--GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE---TTVLHEGFYFANGI  195 (355)
Q Consensus       124 ---~~~~~~~~~~~~~l~~d~d--G~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~---~~~~~~~~~~pngi  195 (355)
                         ...+......++++++.|+  |.+.++.+.                 .+.+..||..++.   ...+.......+.+
T Consensus        89 ~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~-----------------d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~  151 (297)
T 2pm7_B           89 WSQIAVHAVHSASVNSVQWAPHEYGPMLLVASS-----------------DGKVSVVEFKENGTTSPIIIDAHAIGVNSA  151 (297)
T ss_dssp             BCCCEEECCCSSCEEEEEECCGGGCSEEEEEET-----------------TSEEEEEEBCSSSCBCCEEEECCSSCEEEE
T ss_pred             eEEEEEeecCCCceeEEEeCcCCCCcEEEEEEC-----------------CCcEEEEEecCCCceeeeeeecccCccceE
Confidence               2333333356888999886  666555332                 4566667654432   11122122234567


Q ss_pred             EEeCC-------------CCEEEEEeCCCCeEEEEEeCCCCCc--ceeEecccCCCCcCceEECCCC---CEEEEee
Q 018474          196 ALSKN-------------EDFVVVCESWKFRCRRYWLKGDRAG--ILDAFIENLPGGPDNINLAPDG---SFWIGLI  254 (355)
Q Consensus       196 ~~~~d-------------g~~l~v~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~g~p~~i~~d~~G---~lwv~~~  254 (355)
                      +++|+             ++ .+++....+.|..|+++.....  ....+. ........+.+++++   ++.++..
T Consensus       152 ~~~p~~~~~~~~~~~~~~~~-~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~-~H~~~V~~v~~sp~~~~~~~las~s  226 (297)
T 2pm7_B          152 SWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQTYVLESTLE-GHSDWVRDVAWSPTVLLRSYMASVS  226 (297)
T ss_dssp             EECCCC------------CC-EEEEEETTSCEEEEEEETTTTEEEEEEEEC-CCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred             eecCCcccccccCCCCCCcc-eEEEEcCCCcEEEEEEcCCCceEEEEEEec-CCCCceEEEEECCCCCCceEEEEEE
Confidence            77776             34 4555556678888887543211  111121 222334557788875   4554443

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.86  E-value=0.012  Score=54.66  Aligned_cols=219  Identities=10%  Similarity=0.055  Sum_probs=121.6

Q ss_pred             eEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeecc-CCCcccCeEECCCCC-EEEEeCCCcEEEEc-CCC--eEEEcCC
Q 018474           56 DVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI-DSQSLLGLTTTKDGG-VILCDNEKGLLKVT-EEG--VEAIVPD  130 (355)
Q Consensus        56 ~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~-~~~p~~gl~~d~~g~-L~v~~~~~gl~~~~-~~g--~~~~~~~  130 (355)
                      ++..  +++.+.+++.+|.|..+|..+++....... ...+. ++.+  +++ |+.+...+.+..++ .++  +..+...
T Consensus       138 ~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~-~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h  212 (435)
T 1p22_A          138 CLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVL-CLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHH  212 (435)
T ss_dssp             EEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEE-EEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCC
T ss_pred             EEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEE-EEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCC
Confidence            4444  477888899999999999988765543332 23455 6666  455 44455444466666 455  5555443


Q ss_pred             cCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEE---Eeecc-ccccccEEEeCCCCEEEE
Q 018474          131 ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT---VLHEG-FYFANGIALSKNEDFVVV  206 (355)
Q Consensus       131 ~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~---~~~~~-~~~pngi~~~~dg~~l~v  206 (355)
                      ...+.++.+++  ...++.+.                 .+.+..||..+++..   ....+ ......+++  +++.++.
T Consensus       213 ~~~v~~l~~~~--~~l~s~s~-----------------dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s  271 (435)
T 1p22_A          213 CEAVLHLRFNN--GMMVTCSK-----------------DRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVS  271 (435)
T ss_dssp             CSCEEEEECCT--TEEEEEET-----------------TSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEE
T ss_pred             CCcEEEEEEcC--CEEEEeeC-----------------CCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEE
Confidence            35566666653  23333222                 456778887655422   11111 122233444  6775555


Q ss_pred             EeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccC
Q 018474          207 CESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLP  286 (355)
Q Consensus       207 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (355)
                      + ...+.|..|+++...  ....+. ........+..  +|++.++....                              
T Consensus       272 ~-~~dg~i~vwd~~~~~--~~~~~~-~~~~~v~~~~~--~~~~l~~g~~d------------------------------  315 (435)
T 1p22_A          272 A-SGDRTIKVWNTSTCE--FVRTLN-GHKRGIACLQY--RDRLVVSGSSD------------------------------  315 (435)
T ss_dssp             E-ETTSEEEEEETTTCC--EEEEEE-CCSSCEEEEEE--ETTEEEEEETT------------------------------
T ss_pred             E-eCCCeEEEEECCcCc--EEEEEc-CCCCcEEEEEe--CCCEEEEEeCC------------------------------
Confidence            5 456789999975432  122221 22221223444  35555444331                              


Q ss_pred             CCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeCCEEEEeecCCCeEEEeeCCC
Q 018474          287 MGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLDG  347 (355)
Q Consensus       287 ~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~~  347 (355)
                            +.|..+|..+++.+..+..+.+    .+..+..++..|..|+. .+.|..+++..
T Consensus       316 ------g~i~iwd~~~~~~~~~~~~h~~----~v~~~~~~~~~l~sg~~-dg~i~vwd~~~  365 (435)
T 1p22_A          316 ------NTIRLWDIECGACLRVLEGHEE----LVRCIRFDNKRIVSGAY-DGKIKVWDLVA  365 (435)
T ss_dssp             ------SCEEEEETTTCCEEEEECCCSS----CEEEEECCSSEEEEEET-TSCEEEEEHHH
T ss_pred             ------CeEEEEECCCCCEEEEEeCCcC----cEEEEEecCCEEEEEeC-CCcEEEEECCC
Confidence                  3577788757888877765443    35555555566666664 67788777643

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=97.85  E-value=0.0018  Score=57.26  Aligned_cols=153  Identities=10%  Similarity=-0.015  Sum_probs=90.0

Q ss_pred             CCCCceEEEeeC--CCeEEEEecCCEEEEEEcCCCe----------eEEeeccCCCcccCeEECCC--CCEEEEeCCCc-
Q 018474           51 VNHPEDVSVVVS--KGALYTATRDGWVKYFILHNET----------LVNWKHIDSQSLLGLTTTKD--GGVILCDNEKG-  115 (355)
Q Consensus        51 ~~~p~~i~~d~~--~g~l~~~~~~g~i~~~~~~~g~----------~~~~~~~~~~p~~gl~~d~~--g~L~v~~~~~g-  115 (355)
                      -....++++.+.  +..|++++.+|.|..+|..+++          ...+......+. ++++.++  ++++++...+| 
T Consensus        57 ~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~l~~~~~dg~  135 (351)
T 3f3f_A           57 DSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLY-SVKFAPAHLGLKLACLGNDGI  135 (351)
T ss_dssp             SSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEE-EEEECCGGGCSEEEEEETTCE
T ss_pred             CCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCcee-EEEEcCCCCCcEEEEecCCCc
Confidence            355678888852  6778888899999999987652          222222234566 8899887  87555443444 


Q ss_pred             EEEEc-CCC--eEEEc-------------CCcCCcccEEEccC---CcEEEEeCCCCCCCccccccccccCCCCeEEEEe
Q 018474          116 LLKVT-EEG--VEAIV-------------PDASFTNDVIAASD---GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYD  176 (355)
Q Consensus       116 l~~~~-~~g--~~~~~-------------~~~~~~~~l~~d~d---G~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~d  176 (355)
                      +..++ .++  +..+.             .....+..+.+.++   +.++++...                 .+.+..++
T Consensus       136 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~-----------------~~~~~~~~  198 (351)
T 3f3f_A          136 LRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSAL-----------------EQAIIYQR  198 (351)
T ss_dssp             EEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEET-----------------TEEEEEEE
T ss_pred             EEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecC-----------------CCcEEEEc
Confidence            55556 333  11110             01145667778775   555544322                 34455555


Q ss_pred             CCCCeEEEee---ccccccccEEEeCCCC---EEEEEeCCCCeEEEEEeCC
Q 018474          177 PKLKETTVLH---EGFYFANGIALSKNED---FVVVCESWKFRCRRYWLKG  221 (355)
Q Consensus       177 p~~~~~~~~~---~~~~~pngi~~~~dg~---~l~v~~~~~~~i~~~~~~~  221 (355)
                      ...++.....   ........++++|++.   .++++....+.|..|+++.
T Consensus       199 ~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~  249 (351)
T 3f3f_A          199 GKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITE  249 (351)
T ss_dssp             CTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEE
T ss_pred             cCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCC
Confidence            5555543222   1223346789999982   3555555677888888753

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=97.84  E-value=0.0019  Score=64.90  Aligned_cols=133  Identities=9%  Similarity=-0.046  Sum_probs=79.4

Q ss_pred             ceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCC-Ccc----cCeEECCCCCE-EEEeCC---------CcEEEE
Q 018474           55 EDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDS-QSL----LGLTTTKDGGV-ILCDNE---------KGLLKV  119 (355)
Q Consensus        55 ~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~-~p~----~gl~~d~~g~L-~v~~~~---------~gl~~~  119 (355)
                      .++.+.+ ++.++... +|.|+.++..+|+...+..... ...    ..+.+.+||+. .++...         ..++.+
T Consensus        20 ~~~~w~~-dg~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~   97 (740)
T 4a5s_A           20 YSLRWIS-DHEYLYKQ-ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY   97 (740)
T ss_dssp             CCEEECS-SSEEEEEE-TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             cccEECC-CCcEEEEc-CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEE
Confidence            3677884 44444444 8999999998887665533211 111    02677899974 443321         235567


Q ss_pred             c-CCC-eEEEcCCcCCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccc-------
Q 018474          120 T-EEG-VEAIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGF-------  189 (355)
Q Consensus       120 ~-~~g-~~~~~~~~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~-------  189 (355)
                      + .+| .+.+..........+++||| .|.++.                   .+.|+.+|..+++.+.+....       
T Consensus        98 d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~-------------------~~~i~~~~~~~~~~~~lt~~g~~~~~~~  158 (740)
T 4a5s_A           98 DLNKRQLITEERIPNNTQWVTWSPVGHKLAYVW-------------------NNDIYVKIEPNLPSYRITWTGKEDIIYN  158 (740)
T ss_dssp             ETTTTEECCSSCCCTTEEEEEECSSTTCEEEEE-------------------TTEEEEESSTTSCCEECCSCCBTTTEEE
T ss_pred             ECCCCcEEEcccCCCcceeeEECCCCCEEEEEE-------------------CCeEEEEECCCCceEEEcCCCCccceec
Confidence            7 456 55444433456778899999 455542                   235777877666654442211       


Q ss_pred             ------------cccccEEEeCCCCEEEEEe
Q 018474          190 ------------YFANGIALSKNEDFVVVCE  208 (355)
Q Consensus       190 ------------~~pngi~~~~dg~~l~v~~  208 (355)
                                  ....++++||||+.|.+..
T Consensus       159 g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~  189 (740)
T 4a5s_A          159 GITDWVYEEEVFSAYSALWWSPNGTFLAYAQ  189 (740)
T ss_dssp             SBCCHHHHHHTSSSSBCEEECTTSSEEEEEE
T ss_pred             CcccccccchhcCCCcceEECCCCCEEEEEE
Confidence                        1123588999999777653

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.83  E-value=0.015  Score=56.90  Aligned_cols=53  Identities=19%  Similarity=0.226  Sum_probs=38.3

Q ss_pred             eEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeCCEEEEeecC----------------------CCeEEEeeCCC
Q 018474          293 ARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQ----------------------SNFIGILPLDG  347 (355)
Q Consensus       293 ~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~----------------------~~~i~~~~~~~  347 (355)
                      +.+..||.++|+.+-.+..+.+.....+  ..+.+|++||+...                      +++|..|.|+.
T Consensus       507 g~l~A~D~~tG~~lW~~~~~~g~~a~P~--~y~~~G~qYv~~~~G~gg~~~~~~~~~~~~~~~~~~g~~~~~f~l~~  581 (582)
T 1flg_A          507 GYFKAFDAKSGKELWKFQTGSGIVSPPI--TWEQDGEQYLGVTVGYGGAVPLWGGDMADLTRPVAQGGSFWVFKLPS  581 (582)
T ss_dssp             SEEEEEETTTCCEEEEEECSSCCCSCCE--EEEETTEEEEEEEECCCSHHHHHCTHHHHHHTTCCCCCEEEEEECCC
T ss_pred             CcEEEEECCCCCEEEEecCCCCcccCce--EEEECCEEEEEEEccCCCcccccccccccccccCCCCCEEEEEeCCC
Confidence            5799999879999999988776432222  33578999997543                      36788888765

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=97.82  E-value=0.0071  Score=53.82  Aligned_cols=150  Identities=13%  Similarity=0.066  Sum_probs=86.8

Q ss_pred             CCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeE---EeeccCCCcccCeEECC--CCCEEEEeCCCc-EEEEc-CCC-
Q 018474           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLV---NWKHIDSQSLLGLTTTK--DGGVILCDNEKG-LLKVT-EEG-  123 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~---~~~~~~~~p~~gl~~d~--~g~L~v~~~~~g-l~~~~-~~g-  123 (355)
                      ..-.++++++++..|..++.|+.|..+|..+++..   .+....+.+. .+++.+  +|+++++...++ +..++ .++ 
T Consensus        14 ~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~-~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~   92 (316)
T 3bg1_A           14 DMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVW-QVAWAHPMYGNILASCSYDRKVIIWREENGT   92 (316)
T ss_dssp             CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEE-EEEECCGGGSSCEEEEETTSCEEEECCSSSC
T ss_pred             CeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEE-EEEeCCCCCCCEEEEEECCCEEEEEECCCCc
Confidence            34567888877777888899999999998766432   2222234466 788864  366555443444 55555 344 


Q ss_pred             ---eEEEcCCcCCcccEEEccC--CcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCC-eEEEee--cc-cccccc
Q 018474          124 ---VEAIVPDASFTNDVIAASD--GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLK-ETTVLH--EG-FYFANG  194 (355)
Q Consensus       124 ---~~~~~~~~~~~~~l~~d~d--G~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~-~~~~~~--~~-~~~png  194 (355)
                         ...+......+++++++|+  |.+.++.+.                 .+.+..||..++ ......  .. ...-+.
T Consensus        93 ~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~-----------------D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~  155 (316)
T 3bg1_A           93 WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSS-----------------DGAISLLTYTGEGQWEVKKINNAHTIGCNA  155 (316)
T ss_dssp             CCEEEEECCCSSCCCEEEECCTTTCSCEEEECS-----------------SSCEEEEEECSSSCEEECCBTTSSSSCBCC
T ss_pred             ceEEEEccCCCCceEEEEECCCCCCcEEEEEcC-----------------CCCEEEEecCCCCCcceeeeeccccCCcce
Confidence               2223333367889999987  666555433                 345666665443 222111  11 112345


Q ss_pred             EEEeCCC-----------------CEEEEEeCCCCeEEEEEeC
Q 018474          195 IALSKNE-----------------DFVVVCESWKFRCRRYWLK  220 (355)
Q Consensus       195 i~~~~dg-----------------~~l~v~~~~~~~i~~~~~~  220 (355)
                      ++++|+.                 + .+++....+.|..++++
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sgs~D~~v~lWd~~  197 (316)
T 3bg1_A          156 VSWAPAVVPGSLIDHPSGQKPNYIK-RFASGGCDNLIKLWKEE  197 (316)
T ss_dssp             CEECCCCCC------CCSCCCCCCC-BEECCBTTSBCCEEEEC
T ss_pred             EEEccccCCccccccccccCccccc-eEEEecCCCeEEEEEeC
Confidence            6777762                 3 45555556777778774

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=97.78  E-value=0.009  Score=57.76  Aligned_cols=136  Identities=4%  Similarity=-0.086  Sum_probs=80.0

Q ss_pred             cccCeEECCCCCEEEEeCCCc-EEEEcCCC-eEEEcCCc-----CCcccEEEccCCcEEEEeCCCCCCCccccccccccC
Q 018474           95 SLLGLTTTKDGGVILCDNEKG-LLKVTEEG-VEAIVPDA-----SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGK  167 (355)
Q Consensus        95 p~~gl~~d~~g~L~v~~~~~g-l~~~~~~g-~~~~~~~~-----~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~  167 (355)
                      +. ++++.++|...++....| +..++.++ +..+. ..     ..+++++++|||++.++.+.                
T Consensus        88 V~-~vawSPdG~~LAs~s~dg~V~iwd~~~~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~----------------  149 (588)
T 2j04_A           88 PR-VCKPSPIDDWMAVLSNNGNVSVFKDNKMLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNE----------------  149 (588)
T ss_dssp             EE-EEEECSSSSCEEEEETTSCEEEEETTEEEEECC-CSSCSTTTCEEEEEECSSSSCEEEEET----------------
T ss_pred             EE-EEEECCCCCEEEEEeCCCcEEEEeCCceeeecc-CCCccccccEEEEEEcCCCCEEEEEcC----------------
Confidence            55 788999998555444444 55555555 55444 21     35889999999965554322                


Q ss_pred             CCCeEEEEeCCCCe--------EEEeecc----ccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcc-eeEecccC
Q 018474          168 PYGQLRKYDPKLKE--------TTVLHEG----FYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGI-LDAFIENL  234 (355)
Q Consensus       168 ~~g~l~~~dp~~~~--------~~~~~~~----~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~-~~~~~~~~  234 (355)
                       .|.+-.||.++++        +..+...    ...-..++++|||  + ++....+.+..+++++....+ ...+....
T Consensus       150 -DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--L-aass~D~tVrlWd~~~~~~~~~~~tL~~~h  225 (588)
T 2j04_A          150 -DGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--L-VAALSNNSVFSMTVSASSHQPVSRMIQNAS  225 (588)
T ss_dssp             -TSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--E-EEEETTCCEEEECCCSSSSCCCEEEEECCC
T ss_pred             -CCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--E-EEEeCCCeEEEEECCCCccccceeeecccc
Confidence             5678888887764        2333211    1245678999998  3 444557889999887654321 12221112


Q ss_pred             CCCcCceEECCCCCEEEEee
Q 018474          235 PGGPDNINLAPDGSFWIGLI  254 (355)
Q Consensus       235 ~g~p~~i~~d~~G~lwv~~~  254 (355)
                      ......+++.  |+..+++.
T Consensus       226 ~~~V~svaFs--g~~LASa~  243 (588)
T 2j04_A          226 RRKITDLKIV--DYKVVLTC  243 (588)
T ss_dssp             SSCCCCEEEE--TTEEEEEC
T ss_pred             cCcEEEEEEE--CCEEEEEe
Confidence            2234556675  45555553

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.75  E-value=0.0098  Score=55.37  Aligned_cols=143  Identities=13%  Similarity=0.114  Sum_probs=83.3

Q ss_pred             CCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeecc-CCCcccCeEECCCCCEEEEeCCCcEEEEc-CCC--e---E
Q 018474           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI-DSQSLLGLTTTKDGGVILCDNEKGLLKVT-EEG--V---E  125 (355)
Q Consensus        53 ~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~-~~~p~~gl~~d~~g~L~v~~~~~gl~~~~-~~g--~---~  125 (355)
                      ...++.+  ++..+++++.+|.|..+|..+++....... ...+. +++++ ++.++.+...+.+..++ .++  .   .
T Consensus       175 ~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~-~l~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~  250 (435)
T 1p22_A          175 SVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVL-HLRFN-NGMMVTCSKDRSIAVWDMASPTDITLRR  250 (435)
T ss_dssp             CEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEE-EEECC-TTEEEEEETTSCEEEEECSSSSCCEEEE
T ss_pred             cEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEE-EEEEc-CCEEEEeeCCCcEEEEeCCCCCCceeee
Confidence            3445555  467888899999999999988865443322 23355 66665 34566666555566666 333  3   3


Q ss_pred             EEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecc-ccccccEEEeCCCCEE
Q 018474          126 AIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG-FYFANGIALSKNEDFV  204 (355)
Q Consensus       126 ~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~-~~~pngi~~~~dg~~l  204 (355)
                      .+......+..+.+  +|+..++.+.                 .+.+..||..+++....... ......+++  +++.+
T Consensus       251 ~~~~~~~~v~~~~~--~~~~l~s~~~-----------------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l  309 (435)
T 1p22_A          251 VLVGHRAAVNVVDF--DDKYIVSASG-----------------DRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLV  309 (435)
T ss_dssp             EECCCSSCEEEEEE--ETTEEEEEET-----------------TSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEE
T ss_pred             EecCCCCcEEEEEe--CCCEEEEEeC-----------------CCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEE
Confidence            33333345666666  4544444322                 56788899877765433322 122233444  56644


Q ss_pred             EEEeCCCCeEEEEEeCC
Q 018474          205 VVCESWKFRCRRYWLKG  221 (355)
Q Consensus       205 ~v~~~~~~~i~~~~~~~  221 (355)
                       ++....+.|..|+++.
T Consensus       310 -~~g~~dg~i~iwd~~~  325 (435)
T 1p22_A          310 -VSGSSDNTIRLWDIEC  325 (435)
T ss_dssp             -EEEETTSCEEEEETTT
T ss_pred             -EEEeCCCeEEEEECCC
Confidence             4445667899999854

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=97.74  E-value=0.0011  Score=64.06  Aligned_cols=149  Identities=14%  Similarity=0.038  Sum_probs=94.7

Q ss_pred             CCceEEEeeCCCeEEEEecCCEEEEEEcCCCee--EEeeccCCCcccCe--EECCCC-CEEEEeCCCcEEEE-c-CCC--
Q 018474           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETL--VNWKHIDSQSLLGL--TTTKDG-GVILCDNEKGLLKV-T-EEG--  123 (355)
Q Consensus        53 ~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~--~~~~~~~~~p~~gl--~~d~~g-~L~v~~~~~gl~~~-~-~~g--  123 (355)
                      ...++++. .++.|.+++.||.|..+|..++..  ..+......+. ++  ++.++| +++++...++.+++ + .++  
T Consensus       268 ~v~sv~~s-~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~-sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~  345 (524)
T 2j04_B          268 LITTFDFL-SPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYIL-SVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIAT  345 (524)
T ss_dssp             CEEEEEES-SSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEE-EEEEECCTTSCCEEEEEETTSEEEEECGGGHHH
T ss_pred             CEEEEEec-CCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEE-EEEEEcCCCCCeEEEEeccCCeEEEEECCCCCc
Confidence            45678887 467888999999999999876532  12222223455 67  456777 77776656665555 4 344  


Q ss_pred             eEEEcCCc--CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeE-EEeeccccccccEEEeCC
Q 018474          124 VEAIVPDA--SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKET-TVLHEGFYFANGIALSKN  200 (355)
Q Consensus       124 ~~~~~~~~--~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~-~~~~~~~~~pngi~~~~d  200 (355)
                      ...+....  ..+..++++|+|..+++.+.                 .+.+..||..++.. ..+.......+.++++|+
T Consensus       346 ~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~-----------------d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~  408 (524)
T 2j04_B          346 TKTTVSRFRGSNLVPVVYCPQIYSYIYSDG-----------------ASSLRAVPSRAAFAVHPLVSRETTITAIGVSRL  408 (524)
T ss_dssp             HCEEEEECSCCSCCCEEEETTTTEEEEECS-----------------SSEEEEEETTCTTCCEEEEECSSCEEEEECCSS
T ss_pred             ccccccccccCcccceEeCCCcCeEEEeCC-----------------CCcEEEEECcccccceeeecCCCceEEEEeCCC
Confidence            33332211  24678999999987776543                 34677788766542 333333344578999999


Q ss_pred             CCEEEEEeCCCCeEEEEEeCC
Q 018474          201 EDFVVVCESWKFRCRRYWLKG  221 (355)
Q Consensus       201 g~~l~v~~~~~~~i~~~~~~~  221 (355)
                      ++.+ ++....+.|..+++..
T Consensus       409 g~~l-~Sgs~Dgtv~lwd~~~  428 (524)
T 2j04_B          409 HPMV-LAGSADGSLIITNAAR  428 (524)
T ss_dssp             CCBC-EEEETTTEEECCBSCS
T ss_pred             CCeE-EEEECCCEEEEEechH
Confidence            9854 5555677888887643

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=97.74  E-value=0.028  Score=52.02  Aligned_cols=233  Identities=10%  Similarity=0.053  Sum_probs=129.1

Q ss_pred             CCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeecc---CCCcccCeEECCCCCEEEEeCCCc-EEEEc-CCC--eE
Q 018474           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI---DSQSLLGLTTTKDGGVILCDNEKG-LLKVT-EEG--VE  125 (355)
Q Consensus        53 ~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~---~~~p~~gl~~d~~g~L~v~~~~~g-l~~~~-~~g--~~  125 (355)
                      ....|.+. .++.|-++. ++.|+.+|..+|+.......   ...+. ++++.++|+++++...+| +..++ .++  +.
T Consensus       107 y~~~l~wS-~~n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~-sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~  183 (420)
T 4gga_A          107 YLNLVDWS-SGNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYIS-SVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR  183 (420)
T ss_dssp             TCBCEEEC-TTSEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEE-EEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred             cceeEEEC-CCCEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEE-EEEECCCCCEEEEEECCCeEEEEEcCCCcEEE
Confidence            35567887 566666665 89999999999987654332   23467 899999998665444444 55555 455  44


Q ss_pred             EEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCe--EEEeeccccccccEEEeCCCCE
Q 018474          126 AIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE--TTVLHEGFYFANGIALSKNEDF  203 (355)
Q Consensus       126 ~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~--~~~~~~~~~~pngi~~~~dg~~  203 (355)
                      .+......+..+  +.++.+.++.+.                 .+.+..+|.....  ...+........++.++++++.
T Consensus       184 ~~~~h~~~v~~~--s~~~~~l~sgs~-----------------d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~  244 (420)
T 4gga_A          184 NMTSHSARVGSL--SWNSYILSSGSR-----------------SGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRH  244 (420)
T ss_dssp             EECCCSSCEEEE--EEETTEEEEEET-----------------TSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSE
T ss_pred             EEeCCCCceEEE--eeCCCEEEEEeC-----------------CCceeEeeecccceeeEEecccccceeeeeecCCCCe
Confidence            444332334333  344555554322                 4456666654432  2233333344567889999996


Q ss_pred             EEEEeCCCCeEEEEEeCCCCCc--ceeEecccCCCCcCceEECCCC-CEEEEeecCCchhhHhhhcchhHHHHHHhccch
Q 018474          204 VVVCESWKFRCRRYWLKGDRAG--ILDAFIENLPGGPDNINLAPDG-SFWIGLIKMNQTGVRAIQKCREKWELLDAYPGL  280 (355)
Q Consensus       204 l~v~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~g~p~~i~~d~~G-~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (355)
                      +... ...+.+..++.......  ...... ...+....+.+.+.+ ++.+...+                         
T Consensus       245 l~s~-~~D~~v~i~~~~~~~~~~~~~~~~~-~~~~~V~~~~~~p~~~~~la~~~g-------------------------  297 (420)
T 4gga_A          245 LASG-GNDNLVNVWPSAPGEGGWVPLQTFT-QHQGAVKAVAWCPWQSNVLATGGG-------------------------  297 (420)
T ss_dssp             EEEE-ETTSCEEEEESSCCSSCSCCSEEEC-CCSSCEEEEEECTTCTTEEEEEEC-------------------------
T ss_pred             eeee-eccccceEEeeccccccceeeeeec-ccCCceeeeeeCCCcccEEEEEee-------------------------
Confidence            5554 45677888887543211  111111 122222345555554 44433322                         


Q ss_pred             hhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEE--eCCEEEEee-cCCCeEEEeeCCCC
Q 018474          281 ISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAE--FDGNLYLAS-LQSNFIGILPLDGP  348 (355)
Q Consensus       281 ~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~--~~g~L~v~~-~~~~~i~~~~~~~~  348 (355)
                               +..+.|..+|..+|+....+....     .+..+..  .++.|..++ ...+.|..+++++-
T Consensus       298 ---------s~D~~I~iwd~~t~~~~~~~~~~~-----~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~  354 (420)
T 4gga_A          298 ---------TSDRHIRIWNVCSGACLSAVDAHS-----QVCSILWSPHYKELISGHGFAQNQLVIWKYPTM  354 (420)
T ss_dssp             ---------TTTCEEEEEETTTTEEEEEEECSS-----CEEEEEEETTTTEEEEEECTTTCCEEEEETTTC
T ss_pred             ---------cCCCEEEEEeCCccccceeecccc-----ceeeeeecCCCCeEEEEEecCCCEEEEEECCCC
Confidence                     222456667776777777665533     2333333  236666654 34566777776543

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.72  E-value=0.035  Score=55.11  Aligned_cols=54  Identities=17%  Similarity=0.343  Sum_probs=37.9

Q ss_pred             eEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeCCEEEEeecC---------------------CCeEEEeeCCCC
Q 018474          293 ARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQ---------------------SNFIGILPLDGP  348 (355)
Q Consensus       293 ~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~---------------------~~~i~~~~~~~~  348 (355)
                      +.+..+|.++|+.+-.+..+.+.....+  ....+|++|++...                     .++|..+.+...
T Consensus       479 g~l~a~d~~tG~~l~~~~~~~~~~~~p~--~~~~~G~~yva~~~G~g~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~  553 (668)
T 1kv9_A          479 GQMHAYSADKGEALWQFEAQSGIVAAPM--TFELAGRQYVAIMAGWGGVATLTGGESMNLPGMKNRSRLLVFALDGK  553 (668)
T ss_dssp             SEEEEEETTTCCEEEEEECSSCCCSCCE--EEEETTEEEEEEEECCCSHHHHHCCGGGGSTTCCCCCEEEEEEETCC
T ss_pred             ccchhhhhhcChhheEecCCCCcccCce--EEEECCEEEEEEEecCCCccccccccccccccCCCCCeEEEEEcCcc
Confidence            5799999878999999988765422222  23678999986544                     357888877654

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=97.72  E-value=0.0084  Score=60.24  Aligned_cols=183  Identities=11%  Similarity=0.046  Sum_probs=97.0

Q ss_pred             eEEEeeCCCeEEEEe-cCC----EEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCC--------------cE
Q 018474           56 DVSVVVSKGALYTAT-RDG----WVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEK--------------GL  116 (355)
Q Consensus        56 ~i~~d~~~g~l~~~~-~~g----~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~--------------gl  116 (355)
                      ++.+.|++..+..+. .+|    .|+.+|..+|+............ ++++.+|..|+++....              .+
T Consensus       167 ~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~-~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v  245 (741)
T 1yr2_A          167 AWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFS-GLAWLGNDALLYSRFAEPKEGQAFQALNYNQTV  245 (741)
T ss_dssp             EEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESC-CCEESTTSEEEEEECCCC--------CCCCCEE
T ss_pred             eEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceec-cEEEECCCEEEEEEecCcccccccccCCCCCEE
Confidence            456775565554443 333    58889998887654321111224 78887774466665332              26


Q ss_pred             EEEcC-CC-e--EEEcCCc---CCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCC--e-EEEe
Q 018474          117 LKVTE-EG-V--EAIVPDA---SFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLK--E-TTVL  185 (355)
Q Consensus       117 ~~~~~-~g-~--~~~~~~~---~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~--~-~~~~  185 (355)
                      ++.+. ++ .  +.+....   .+..++.+++||+ |.++....             ......++.+|.+++  + .+.+
T Consensus       246 ~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~-------------~~~~~~l~~~d~~~~~~~~~~~l  312 (741)
T 1yr2_A          246 WLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEG-------------TDPVNTVHVARVTNGKIGPVTAL  312 (741)
T ss_dssp             EEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECT-------------TCSCCEEEEEEEETTEECCCEEE
T ss_pred             EEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEcc-------------CCCcceEEEEECCCCCCcccEEe
Confidence            66663 33 1  2222221   2466788999995 55543220             011346888887666  4 5555


Q ss_pred             eccccccccEEEeCCCCEEEEEeCC---CCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474          186 HEGFYFANGIALSKNEDFVVVCESW---KFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       186 ~~~~~~pngi~~~~dg~~l~v~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      ......... .+++||+.+|+....   ..+|+++++++.. +..+.+.........++..+ ++.+++....
T Consensus       313 ~~~~~~~~~-~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~-~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~  382 (741)
T 1yr2_A          313 IPDLKAQWD-FVDGVGDQLWFVSGDGAPLKKIVRVDLSGST-PRFDTVVPESKDNLESVGIA-GNRLFASYIH  382 (741)
T ss_dssp             ECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEECSSSS-CEEEEEECCCSSEEEEEEEE-BTEEEEEEEE
T ss_pred             cCCCCceEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCc-cccEEEecCCCCeEEEEEEE-CCEEEEEEEE
Confidence            433221222 246889988887542   4569999986532 23333332222222344454 3455555433

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=97.71  E-value=0.0019  Score=65.19  Aligned_cols=185  Identities=12%  Similarity=0.057  Sum_probs=106.1

Q ss_pred             CCCceEEEeeC--CCeEEEEecCCEEEEEEcCCCeeEEee---ccCCCcccCeEECCC--CCEEEEeCCCc-EEEEc-CC
Q 018474           52 NHPEDVSVVVS--KGALYTATRDGWVKYFILHNETLVNWK---HIDSQSLLGLTTTKD--GGVILCDNEKG-LLKVT-EE  122 (355)
Q Consensus        52 ~~p~~i~~d~~--~g~l~~~~~~g~i~~~~~~~g~~~~~~---~~~~~p~~gl~~d~~--g~L~v~~~~~g-l~~~~-~~  122 (355)
                      ..-.++.+.++  +..+.+++.+|.|..++..+++.....   .....+. ++++.++  |+++++...+| +..++ .+
T Consensus        54 ~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~-~v~~sp~~~~~~l~sgs~dg~I~vwdl~~  132 (753)
T 3jro_A           54 GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVN-SVQWAPHEYGPLLLVASSDGKVSVVEFKE  132 (753)
T ss_dssp             SCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEE-EEEECCGGGCSEEEEEETTSEEEEEECCS
T ss_pred             CceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeE-EEEECCCCCCCEEEEEeCCCcEEEEEeec
Confidence            44567888755  677888899999999998887633222   2234566 8889887  77655544445 55555 22


Q ss_pred             C----eEEEcCCcCCcccEEEcc-------------CCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCe--EE
Q 018474          123 G----VEAIVPDASFTNDVIAAS-------------DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE--TT  183 (355)
Q Consensus       123 g----~~~~~~~~~~~~~l~~d~-------------dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~--~~  183 (355)
                      +    ...+......+.++.+++             +|.+.++.+.                 .|.+..||..++.  ..
T Consensus       133 ~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~-----------------dg~I~iwd~~~~~~~~~  195 (753)
T 3jro_A          133 NGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA-----------------DNLVKIWKYNSDAQTYV  195 (753)
T ss_dssp             SSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEET-----------------TSCEEEEEEETTTTEEE
T ss_pred             CCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEEC-----------------CCeEEEEeccCCcccce
Confidence            2    222323335677888887             3544443322                 4567777654442  11


Q ss_pred             E---eeccccccccEEEeCC---CCEEEEEeCCCCeEEEEEeCCCCCcceeEecc--cCCCCcCceEECCCCCEEEEeec
Q 018474          184 V---LHEGFYFANGIALSKN---EDFVVVCESWKFRCRRYWLKGDRAGILDAFIE--NLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       184 ~---~~~~~~~pngi~~~~d---g~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      .   +.........++++|+   ++ .+++....+.|..|++.............  ...+....+.++++|++.++...
T Consensus       196 ~~~~~~~h~~~V~~l~~sp~~~~~~-~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~  274 (753)
T 3jro_A          196 LESTLEGHSDWVRDVAWSPTVLLRS-YLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG  274 (753)
T ss_dssp             EEEEECCCSSCEEEEEECCCCSSSE-EEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECS
T ss_pred             eeeeecCCCCcEEEEEeccCCCCCC-EEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcC
Confidence            1   1112234567899999   66 44555567789999986532111111111  12233456788888875555433

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.69  E-value=0.054  Score=53.99  Aligned_cols=55  Identities=18%  Similarity=0.283  Sum_probs=39.2

Q ss_pred             eEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeCCEEEEeecCC---------------------CeEEEeeCCCCC
Q 018474          293 ARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQS---------------------NFIGILPLDGPE  349 (355)
Q Consensus       293 ~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~---------------------~~i~~~~~~~~~  349 (355)
                      +.+..||.++|+.+-.+..+.+.....++  ...+|+.||+...+                     +.+..|.|++..
T Consensus       496 g~l~a~D~~tG~~lw~~~~~~~~~~~p~t--y~~~G~qyv~~~~G~gg~~~~~~~~~~~~~~~~~g~~~~~f~l~~~~  571 (689)
T 1yiq_A          496 GRVIAYAADTGEKLWEQPAASGVMAAPVT--YSVDGEQYVTFMAGWGGAFSTFAGALSLRAGVQPYAQVLTYKLGGTA  571 (689)
T ss_dssp             SEEEEEETTTCCEEEEEECSSCCCSCCEE--EEETTEEEEEEEECCCTTHHHHTHHHHGGGCCCCCCEEEEEEETCCC
T ss_pred             CcEEEEECCCCccceeeeCCCCcccCceE--EEECCEEEEEEEecCCccccccccccccccccCCCceEEEeecCCcc
Confidence            57999998789999899887664333332  36789999875533                     477888887543

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=97.67  E-value=0.0058  Score=54.70  Aligned_cols=138  Identities=9%  Similarity=-0.031  Sum_probs=79.5

Q ss_pred             CCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCCC-----cEEEEcC-CC-eEEEcCCcCCcccEEEccCC
Q 018474           72 DGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEK-----GLLKVTE-EG-VEAIVPDASFTNDVIAASDG  143 (355)
Q Consensus        72 ~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~~-----gl~~~~~-~g-~~~~~~~~~~~~~l~~d~dG  143 (355)
                      ++.|+.++..+++...+    .... .+++.++|+ |.++....     .|+.++. +| .+.+..... +.++.++|||
T Consensus        42 ~~~l~~~d~~~~~~~~l----~~~~-~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg  115 (347)
T 2gop_A           42 ENTIVIENLKNNARRFI----ENAT-MPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDS  115 (347)
T ss_dssp             EEEEEEEETTTCCEEEE----ESCE-EEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTS
T ss_pred             cceEEEEeCCCCceEEc----ccCC-CeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECCCC
Confidence            45788889877776655    3355 688999996 44433221     3777774 55 444433223 7888999999


Q ss_pred             c-EEEEeCCCCC----C-Ccccccc----ccccCCCCeEEEEeCCCCeE-EEeeccccccccEEEeCCCCEEEEEeCC--
Q 018474          144 T-LYFTVASTKY----T-PTDFYKD----MAEGKPYGQLRKYDPKLKET-TVLHEGFYFANGIALSKNEDFVVVCESW--  210 (355)
Q Consensus       144 ~-ly~~d~~~~~----~-~~~~~~~----~~~~~~~g~l~~~dp~~~~~-~~~~~~~~~pngi~~~~dg~~l~v~~~~--  210 (355)
                      + |+++.....-    . .....+.    -+.......++.+|..+++. +.+.. . ....++++||| .++.+...  
T Consensus       116 ~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~  192 (347)
T 2gop_A          116 RKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREI  192 (347)
T ss_dssp             SEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCS
T ss_pred             CEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccc
Confidence            4 6665321000    0 0000000    00001134699999988887 55544 2 56678999999 66666432  


Q ss_pred             ------CCeEEEEE
Q 018474          211 ------KFRCRRYW  218 (355)
Q Consensus       211 ------~~~i~~~~  218 (355)
                            ...|+.++
T Consensus       193 ~~~~~~~~~l~~~d  206 (347)
T 2gop_A          193 IPQYFKFWDIYIWE  206 (347)
T ss_dssp             SCCSSCCEEEEEEE
T ss_pred             cccccccccEEEeC
Confidence                  23677776

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.67  E-value=0.051  Score=53.17  Aligned_cols=162  Identities=10%  Similarity=-0.052  Sum_probs=85.2

Q ss_pred             eEEEeeCCCe----EEEEecCCEEEEEEcCCCeeEEeeccCC-----CcccCeEECCCCCEEEEeC------CCcEEEEc
Q 018474           56 DVSVVVSKGA----LYTATRDGWVKYFILHNETLVNWKHIDS-----QSLLGLTTTKDGGVILCDN------EKGLLKVT  120 (355)
Q Consensus        56 ~i~~d~~~g~----l~~~~~~g~i~~~~~~~g~~~~~~~~~~-----~p~~gl~~d~~g~L~v~~~------~~gl~~~~  120 (355)
                      ++++.+.++.    +|+++.++.|+.+|.++|+..--.....     .....-.+ .+|.+|++..      .+.++.+|
T Consensus       110 g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g~V~vg~~g~e~g~~g~v~A~D  188 (599)
T 1w6s_A          110 GLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKDKVIIGSSGAELGVRGYLTAYD  188 (599)
T ss_dssp             CCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETTEEEECCBCGGGTCCCEEEEEE
T ss_pred             ceEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-ECCEEEEEecccccCCCCeEEEEE
Confidence            4566223556    9999999999999999997542211111     11101122 2678888764      34588998


Q ss_pred             -CCC-eEE-Ec-CCcC-------------------------------------CcccEEEcc-CCcEEEEeCCC-CCCCc
Q 018474          121 -EEG-VEA-IV-PDAS-------------------------------------FTNDVIAAS-DGTLYFTVAST-KYTPT  157 (355)
Q Consensus       121 -~~g-~~~-~~-~~~~-------------------------------------~~~~l~~d~-dG~ly~~d~~~-~~~~~  157 (355)
                       .+| ..- +. ....                                     .-...++|+ .|.+|++.... .+...
T Consensus       189 ~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~  268 (599)
T 1w6s_A          189 VKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNET  268 (599)
T ss_dssp             TTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGG
T ss_pred             CCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCc
Confidence             477 321 11 1100                                     001356775 46899886542 11110


Q ss_pred             cccccccccCCCCeEEEEeCCCCeEEEeecccc-------cccc-EEEe---CCCC--EEEEEeCCCCeEEEEEeCC
Q 018474          158 DFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFY-------FANG-IALS---KNED--FVVVCESWKFRCRRYWLKG  221 (355)
Q Consensus       158 ~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~-------~png-i~~~---~dg~--~l~v~~~~~~~i~~~~~~~  221 (355)
                      .-   .-+......++.+|++||+.....+...       .++. +.++   .||+  .+++..+..+.++.++.+.
T Consensus       269 ~r---~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~t  342 (599)
T 1w6s_A          269 MR---PGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTD  342 (599)
T ss_dssp             GS---CSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTT
T ss_pred             cc---CCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCC
Confidence            00   0011123579999999998765432211       1111 2222   4563  3445445566777777643

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=97.66  E-value=0.01  Score=52.68  Aligned_cols=198  Identities=12%  Similarity=0.019  Sum_probs=100.3

Q ss_pred             CCCceEEEeeC--CCeEEEEecCCEEEEEEcCCCeeEE---eeccCCCcccCeEECCC--CCEEEEeCCCc-EEEEc-CC
Q 018474           52 NHPEDVSVVVS--KGALYTATRDGWVKYFILHNETLVN---WKHIDSQSLLGLTTTKD--GGVILCDNEKG-LLKVT-EE  122 (355)
Q Consensus        52 ~~p~~i~~d~~--~g~l~~~~~~g~i~~~~~~~g~~~~---~~~~~~~p~~gl~~d~~--g~L~v~~~~~g-l~~~~-~~  122 (355)
                      ..-.++++.++  +..|..++.|+.|..+|..+++...   +......+. ++++.++  |.++++...++ +..++ ..
T Consensus        58 ~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~-~v~~~p~~~g~~lasgs~D~~i~lwd~~~  136 (316)
T 3bg1_A           58 GPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVN-SVCWAPHDYGLILACGSSDGAISLLTYTG  136 (316)
T ss_dssp             SCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCC-EEEECCTTTCSCEEEECSSSCEEEEEECS
T ss_pred             ccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceE-EEEECCCCCCcEEEEEcCCCCEEEEecCC
Confidence            34456777532  5678888899999999987764322   221233466 8888876  66555544445 44444 22


Q ss_pred             C--eEEEc---CCcCCcccEEEccCC---cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCC-eEEEe---ecccc
Q 018474          123 G--VEAIV---PDASFTNDVIAASDG---TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLK-ETTVL---HEGFY  190 (355)
Q Consensus       123 g--~~~~~---~~~~~~~~l~~d~dG---~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~-~~~~~---~~~~~  190 (355)
                      +  .....   .....++.+.+++++   .+... ....  .......+..+...+.+..||..++ +.+..   .....
T Consensus       137 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~  213 (316)
T 3bg1_A          137 EGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDH-PSGQ--KPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSD  213 (316)
T ss_dssp             SSCEEECCBTTSSSSCBCCCEECCCCCC-------CCSC--CCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSS
T ss_pred             CCCcceeeeeccccCCcceEEEccccCCcccccc-cccc--CccccceEEEecCCCeEEEEEeCCCCccceeeecccCCC
Confidence            2  22211   111456677777763   11100 0000  0000011222333455666665433 22222   11122


Q ss_pred             ccccEEEeCCC----CEEEEEeCCCCeEEEEEeCCCCCc--ceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474          191 FANGIALSKNE----DFVVVCESWKFRCRRYWLKGDRAG--ILDAFIENLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       191 ~pngi~~~~dg----~~l~v~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      ..+.++++|++    + ++++....+.|..++++.....  ..+.+ ....+....+.+.++|++.++...
T Consensus       214 ~V~~v~~sp~~~~~~~-~las~s~D~~v~iw~~~~~~~~~~~~~~~-~~~~~~v~~v~~sp~g~~las~~~  282 (316)
T 3bg1_A          214 WVRDVAWAPSIGLPTS-TIASCSQDGRVFIWTCDDASSNTWSPKLL-HKFNDVVWHVSWSITANILAVSGG  282 (316)
T ss_dssp             CEEEEECCCCSSCSCC-EEEEEETTCEEEEEECSSTTCCCCBCCEE-EECSSCEEEEEECTTTCCEEEEES
T ss_pred             ceEEEEecCCCCCCCc-eEEEEcCCCeEEEEEccCccccchhhhhh-hcCCCcEEEEEEcCCCCEEEEEcC
Confidence            34678999986    4 5566666788888887542111  11112 122233445778888887665544

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.65  E-value=0.027  Score=50.57  Aligned_cols=226  Identities=6%  Similarity=-0.029  Sum_probs=119.8

Q ss_pred             ceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeecc---CCCcccCeEECCCCCEEEEeCCCcEEEEcCCC--eEEEcC
Q 018474           55 EDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI---DSQSLLGLTTTKDGGVILCDNEKGLLKVTEEG--VEAIVP  129 (355)
Q Consensus        55 ~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~---~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~~g--~~~~~~  129 (355)
                      .+|+++ . +.+|+....|.|++-.-....++.....   .+.+. .++...++++|++...+++++-...|  .+.+..
T Consensus        83 ~~i~~~-~-~~~~~~g~~g~i~~S~DgG~tW~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~g~v~~S~DgG~tW~~~~~  159 (327)
T 2xbg_A           83 NSVSFQ-G-NEGWIVGEPPIMLHTTDGGQSWSQIPLDPKLPGSPR-LIKALGNGSAEMITNVGAIYRTKDSGKNWQALVQ  159 (327)
T ss_dssp             EEEEEE-T-TEEEEEEETTEEEEESSTTSSCEECCCCTTCSSCEE-EEEEEETTEEEEEETTCCEEEESSTTSSEEEEEC
T ss_pred             EEEEec-C-CeEEEEECCCeEEEECCCCCCceECccccCCCCCeE-EEEEECCCCEEEEeCCccEEEEcCCCCCCEEeec
Confidence            467776 3 6788777778777643212245554321   13456 67776778899887655677665444  444433


Q ss_pred             C-cCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCC-CCeEEEeecc-ccccccEEEeCCCCEEEE
Q 018474          130 D-ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPK-LKETTVLHEG-FYFANGIALSKNEDFVVV  206 (355)
Q Consensus       130 ~-~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~-~~~~~~~~~~-~~~pngi~~~~dg~~l~v  206 (355)
                      . ...+.+++++++|++|+...                  .|.+++-+.. ...++.+... ......++++++++ +|+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~g~------------------~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~-~~~  220 (327)
T 2xbg_A          160 EAIGVMRNLNRSPSGEYVAVSS------------------RGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGR-LWM  220 (327)
T ss_dssp             SCCCCEEEEEECTTSCEEEEET------------------TSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSC-EEE
T ss_pred             CCCcceEEEEEcCCCcEEEEEC------------------CCcEEEEeCCCCCceeECCCCCCCccceeEECCCCC-EEE
Confidence            2 24567788888888887542                  2356655322 2344443221 12234677888887 666


Q ss_pred             EeCCCCeEEEEEeCCCCCcceeEeccc-CCC-C-cCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhc
Q 018474          207 CESWKFRCRRYWLKGDRAGILDAFIEN-LPG-G-PDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISL  283 (355)
Q Consensus       207 ~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~g-~-p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (355)
                      ... .+.+++.+.++..  +.+..... ++. . ...+..++++.+|++...                            
T Consensus       221 ~~~-~G~~~~s~~D~G~--tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~----------------------------  269 (327)
T 2xbg_A          221 IVN-GGKIAFSDPDNSE--NWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGA----------------------------  269 (327)
T ss_dssp             EET-TTEEEEEETTEEE--EECCCBCTTSSCCSCEEEEEESSSSCEEEEEST----------------------------
T ss_pred             EeC-CceEEEecCCCCC--eeEeccCCcccCCcceEEEEecCCCEEEEEeCC----------------------------
Confidence            543 3455554323211  11111101 111 0 123456777889998654                            


Q ss_pred             ccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEE-EeCCEEEEeecCCCeEEEeeC
Q 018474          284 LLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAA-EFDGNLYLASLQSNFIGILPL  345 (355)
Q Consensus       284 ~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~-~~~g~L~v~~~~~~~i~~~~~  345 (355)
                               +.+++ +...|+.........+. ...+..+. ..++++|+.+. ...|.++.-
T Consensus       270 ---------g~i~~-S~DgG~tW~~~~~~~~~-~~~~~~v~~~~~~~~~~~G~-~G~i~~~~~  320 (327)
T 2xbg_A          270 ---------GALLC-SQDGGQTWQQDVDVKKV-PSNFYKILFFSPDQGFILGQ-KGILLRYVT  320 (327)
T ss_dssp             ---------TCEEE-ESSTTSSCEECGGGTTS-SSCCCEEEEEETTEEEEECS-TTEEEEECC
T ss_pred             ---------CeEEE-eCCCCcccEEcCccCCC-CCCeEEEEEECCCceEEEcC-CceEEEEcC
Confidence                     23543 33256655555432211 11233343 35788888876 457777764

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.62  E-value=0.024  Score=51.27  Aligned_cols=171  Identities=11%  Similarity=0.145  Sum_probs=93.3

Q ss_pred             CCeEEEEe-cCCEEEEEEcCCCeeEEeeccCCCcccCeEECC----CC----CEEEEeCC--C-c--EEEEcC-CC-eEE
Q 018474           63 KGALYTAT-RDGWVKYFILHNETLVNWKHIDSQSLLGLTTTK----DG----GVILCDNE--K-G--LLKVTE-EG-VEA  126 (355)
Q Consensus        63 ~g~l~~~~-~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~----~g----~L~v~~~~--~-g--l~~~~~-~g-~~~  126 (355)
                      ...+++++ ..++|+.+|. +|+....... ++++ ++.+-+    .|    .+++++..  . .  +|.+++ ++ ++.
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~-g~~n-nVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~  115 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT-GKLN-NVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC-SCEE-EEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC-CCcc-cEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence            33456654 4678999999 7776655433 4454 443321    12    23555543  2 2  455564 55 666


Q ss_pred             EcC-------CcCCcccEEE--ccC-Cc--EEEEeCCCCCCCccccccccccCCCCeEEEEeC---CCCeE--EEe--ec
Q 018474          127 IVP-------DASFTNDVIA--ASD-GT--LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDP---KLKET--TVL--HE  187 (355)
Q Consensus       127 ~~~-------~~~~~~~l~~--d~d-G~--ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp---~~~~~--~~~--~~  187 (355)
                      +..       ....|.++|.  +++ |.  +|+++.                  .|.+..|..   ..++.  +.+  ..
T Consensus       116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k------------------~G~~~q~~l~~~~~g~~~~~lVR~f~  177 (355)
T 3amr_A          116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGK------------------EGEFEQYELKADKNGYISGKKVRAFK  177 (355)
T ss_dssp             CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECS------------------SSEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred             ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECC------------------CCeEEEEEEEeCCCCcccceEEEEec
Confidence            632       1267899998  774 55  445432                  234433321   22222  111  22


Q ss_pred             cccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEe--cc--cCCCCcCceEE--CCCCC-EEEEeec
Q 018474          188 GFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAF--IE--NLPGGPDNINL--APDGS-FWIGLIK  255 (355)
Q Consensus       188 ~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~--~~--~~~g~p~~i~~--d~~G~-lwv~~~~  255 (355)
                      ....|.|++++++...||+++.. .+||+|+.+.....+.+.+  ..  .+..-+.||++  .++|+ +++++.+
T Consensus       178 lgsq~EgcvvDd~~g~Lyv~eEd-~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQ  251 (355)
T 3amr_A          178 MNSQTEGMAADDEYGRLYIAEED-EAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQ  251 (355)
T ss_dssp             CSSCEEEEEEETTTTEEEEEETT-TEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEG
T ss_pred             CCCCcceEEEcCCCCeEEEeccc-ceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcC
Confidence            23568899999988899999987 5799999643221111111  11  12123567776  45555 5555555

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=97.59  E-value=0.0071  Score=60.28  Aligned_cols=184  Identities=9%  Similarity=-0.018  Sum_probs=98.5

Q ss_pred             CceEEEeeCCCeEEEE-ecC----CEEEEEEcCCCeeEEeeccCC-CcccCeEECCCCC-EEEEeCCCc-----------
Q 018474           54 PEDVSVVVSKGALYTA-TRD----GWVKYFILHNETLVNWKHIDS-QSLLGLTTTKDGG-VILCDNEKG-----------  115 (355)
Q Consensus        54 p~~i~~d~~~g~l~~~-~~~----g~i~~~~~~~g~~~~~~~~~~-~p~~gl~~d~~g~-L~v~~~~~g-----------  115 (355)
                      -.++.+.|++..|..+ ..+    ..|+.+|..+|+......... ... ++++.+||+ |+.+.....           
T Consensus       123 ~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~-~~~wspDg~~l~~~~~d~~~~~~~~~~~~~  201 (695)
T 2bkl_A          123 LGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYA-TPKWTPDSKGFYYEWLPTDPSIKVDERPGY  201 (695)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTC-CCEECTTSSEEEEEECCCCTTSCGGGGGGG
T ss_pred             EEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCccccc-ceEEecCCCEEEEEEecCCCCCccccCCCC
Confidence            3456777666655433 323    479999998887541111111 125 789999997 444443222           


Q ss_pred             --EEEEcC-CC-e--EEEcCCc---CCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEe
Q 018474          116 --LLKVTE-EG-V--EAIVPDA---SFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL  185 (355)
Q Consensus       116 --l~~~~~-~g-~--~~~~~~~---~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~  185 (355)
                        +++++. ++ .  +.+....   ....++.+++||+ |.++....              .....++.++..+++.+.+
T Consensus       202 ~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~--------------~~~~~l~~~~~~~~~~~~l  267 (695)
T 2bkl_A          202 TTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRG--------------WSENDVYWKRPGEKDFRLL  267 (695)
T ss_dssp             CEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEET--------------TTEEEEEEECTTCSSCEEE
T ss_pred             CEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCC--------------CCceEEEEEcCCCCceEEe
Confidence              777773 44 1  2332221   3566788999994 55543220              0123677777766666655


Q ss_pred             eccccccccEEEeCCCCEEEEEeC---CCCeEEEEEeCCCCCcceeEecccCC-CCcCceEECCCCCEEEEeec
Q 018474          186 HEGFYFANGIALSKNEDFVVVCES---WKFRCRRYWLKGDRAGILDAFIENLP-GGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       186 ~~~~~~pngi~~~~dg~~l~v~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~-g~p~~i~~d~~G~lwv~~~~  255 (355)
                      ........... .+||+ +|+...   ...+|+++++++......+.+....+ ....++.++ ++.++++...
T Consensus       268 ~~~~~~~~~~~-~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~  338 (695)
T 2bkl_A          268 VKGVGAKYEVH-AWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLK  338 (695)
T ss_dssp             EECSSCCEEEE-EETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEE
T ss_pred             ecCCCceEEEE-ecCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEE
Confidence            54332222333 36777 777654   25789999886543222233332221 112345555 4556665543

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.46  E-value=0.056  Score=48.45  Aligned_cols=179  Identities=13%  Similarity=0.111  Sum_probs=97.1

Q ss_pred             CCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeecc----CCCcccCeEECCCCCEEEEeCCCcEEEEcCCC--eE
Q 018474           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI----DSQSLLGLTTTKDGGVILCDNEKGLLKVTEEG--VE  125 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~----~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~~g--~~  125 (355)
                      ....+|.+. +.+.+|+....|.|++-.-....++.....    ..... ++++++ +++|++...+++++-...|  -+
T Consensus        36 ~~~~~v~~~-~~~~~~~~G~~g~i~~s~DgG~tW~~~~~~~~~~~~~~~-~i~~~~-~~~~~~g~~g~i~~S~DgG~tW~  112 (327)
T 2xbg_A           36 ATILDMSFI-DRHHGWLVGVNATLMETRDGGQTWEPRTLVLDHSDYRFN-SVSFQG-NEGWIVGEPPIMLHTTDGGQSWS  112 (327)
T ss_dssp             SCEEEEEES-SSSCEEEEETTTEEEEESSTTSSCEECCCCCSCCCCEEE-EEEEET-TEEEEEEETTEEEEESSTTSSCE
T ss_pred             CcEEEEEEC-CCCcEEEEcCCCeEEEeCCCCCCCeECCCCCCCCCccEE-EEEecC-CeEEEEECCCeEEEECCCCCCce
Confidence            345667776 566677766678776653212245554321    11345 778875 7888876444566543444  44


Q ss_pred             EEcCC---cCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccc-cccccEEEeCCC
Q 018474          126 AIVPD---ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGF-YFANGIALSKNE  201 (355)
Q Consensus       126 ~~~~~---~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~-~~pngi~~~~dg  201 (355)
                      .+...   ...+.++++.+++++|+...                  .+.+++-.-....++...... ....++++++++
T Consensus       113 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~------------------~g~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~  174 (327)
T 2xbg_A          113 QIPLDPKLPGSPRLIKALGNGSAEMITN------------------VGAIYRTKDSGKNWQALVQEAIGVMRNLNRSPSG  174 (327)
T ss_dssp             ECCCCTTCSSCEEEEEEEETTEEEEEET------------------TCCEEEESSTTSSEEEEECSCCCCEEEEEECTTS
T ss_pred             ECccccCCCCCeEEEEEECCCCEEEEeC------------------CccEEEEcCCCCCCEEeecCCCcceEEEEEcCCC
Confidence            43322   13456777777788887642                  235666543344566554322 123467788888


Q ss_pred             CEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474          202 DFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       202 ~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      + +|+.. ..+.+++-+-.+...  .+......+.....+.++++|++|++...
T Consensus       175 ~-~~~~g-~~G~~~~S~d~gG~t--W~~~~~~~~~~~~~~~~~~~g~~~~~~~~  224 (327)
T 2xbg_A          175 E-YVAVS-SRGSFYSTWEPGQTA--WEPHNRTTSRRLHNMGFTPDGRLWMIVNG  224 (327)
T ss_dssp             C-EEEEE-TTSSEEEEECTTCSS--CEEEECCSSSCEEEEEECTTSCEEEEETT
T ss_pred             c-EEEEE-CCCcEEEEeCCCCCc--eeECCCCCCCccceeEECCCCCEEEEeCC
Confidence            7 44443 345676655321221  22221111222345677888999988754

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.45  E-value=0.0049  Score=51.91  Aligned_cols=135  Identities=12%  Similarity=0.003  Sum_probs=80.5

Q ss_pred             CcccCeEECCCCCEEEEeCCCcEEEEcC-C-------C-eEEEcCC-cCCcccEEEccCCcEEEEeCCCCCCCccccccc
Q 018474           94 QSLLGLTTTKDGGVILCDNEKGLLKVTE-E-------G-VEAIVPD-ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDM  163 (355)
Q Consensus        94 ~p~~gl~~d~~g~L~v~~~~~gl~~~~~-~-------g-~~~~~~~-~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~  163 (355)
                      ... .++++++|+||.. ..+.|+++++ +       + .+.+... ...-..+.+|++|.||+..              
T Consensus        42 ~~~-~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav~--------------  105 (236)
T 1tl2_A           42 NFK-FLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAVS--------------  105 (236)
T ss_dssp             TCS-EEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEEE--------------
T ss_pred             cce-eEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEeC--------------
Confidence            455 7999999999999 4557999984 5       2 2333321 1345678999999999872              


Q ss_pred             cccCCCCeEEEEeCCCC-eE------EEeec-cccccccEEEeCCCCEEEEEeCCCCeEEEEEe-CCCC---CcceeEec
Q 018474          164 AEGKPYGQLRKYDPKLK-ET------TVLHE-GFYFANGIALSKNEDFVVVCESWKFRCRRYWL-KGDR---AGILDAFI  231 (355)
Q Consensus       164 ~~~~~~g~l~~~dp~~~-~~------~~~~~-~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~-~~~~---~~~~~~~~  231 (355)
                           .|.|||.+|-+. .-      +.+.+ +-..-.-|.++|+|. ||...  .+++++-.. .+..   ......+.
T Consensus       106 -----dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~-Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g  177 (236)
T 1tl2_A          106 -----KDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGY-LYAVH--GQQFYKALPPVSNQDNWLARATKIG  177 (236)
T ss_dssp             -----TTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSC-EEEEE--TTEEEEECCCSSTTCCHHHHCEEEE
T ss_pred             -----CCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCce-EEEEe--CCcEEecCCCCCCCcccccccceec
Confidence                 468999987332 11      11111 112235688999997 88777  466766332 1111   11111111


Q ss_pred             -ccCCCCcCceEECCCCCEEEEe
Q 018474          232 -ENLPGGPDNINLAPDGSFWIGL  253 (355)
Q Consensus       232 -~~~~g~p~~i~~d~~G~lwv~~  253 (355)
                       +... .-.-+.++++|+||.+.
T Consensus       178 ~~g~~-~yr~l~f~~~G~l~~v~  199 (236)
T 1tl2_A          178 QGGWD-TFKFLFFSSVGTLFGVQ  199 (236)
T ss_dssp             SSSGG-GEEEEEECTTSCEEEEE
T ss_pred             cCCcc-eEEEEEECCCCcEEEEe
Confidence             0000 11225688999999888

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=97.42  E-value=0.0098  Score=57.33  Aligned_cols=183  Identities=12%  Similarity=-0.008  Sum_probs=106.4

Q ss_pred             CCceEEEeeC------CCeEEEEecCCEEEEEEcCCCeeE------------EeeccCCCcccCeEECCCCCEEEEeCCC
Q 018474           53 HPEDVSVVVS------KGALYTATRDGWVKYFILHNETLV------------NWKHIDSQSLLGLTTTKDGGVILCDNEK  114 (355)
Q Consensus        53 ~p~~i~~d~~------~g~l~~~~~~g~i~~~~~~~g~~~------------~~~~~~~~p~~gl~~d~~g~L~v~~~~~  114 (355)
                      ...++++.|.      ++.|..++.+|.|..++..+++..            .+........ ++++.+++.|..+...+
T Consensus       209 ~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~-sv~~s~~~~lasgs~Dg  287 (524)
T 2j04_B          209 EVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLIT-TFDFLSPTTVVCGFKNG  287 (524)
T ss_dssp             SEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEE-EEEESSSSEEEEEETTS
T ss_pred             cEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEE-EEEecCCCeEEEEeCCC
Confidence            3567888754      356777888999999998655311            1111123455 78887766666666444


Q ss_pred             cEEEEc-CCC---eEEEcCCcCCcccE--EEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEE-Eee
Q 018474          115 GLLKVT-EEG---VEAIVPDASFTNDV--IAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT-VLH  186 (355)
Q Consensus       115 gl~~~~-~~g---~~~~~~~~~~~~~l--~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~-~~~  186 (355)
                      .+..++ .++   ...+......++++  +..++| ++.++.+.                 .+.+..||..+++.. .+.
T Consensus       288 tV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~-----------------D~tvklWD~~~~~~~~~~~  350 (524)
T 2j04_B          288 FVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAV-----------------DGYFYIFNPKDIATTKTTV  350 (524)
T ss_dssp             EEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEET-----------------TSEEEEECGGGHHHHCEEE
T ss_pred             EEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEecc-----------------CCeEEEEECCCCCcccccc
Confidence            455555 333   33343333568888  456777 77776543                 567778887554321 111


Q ss_pred             ccc--cccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeecCC
Q 018474          187 EGF--YFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMN  257 (355)
Q Consensus       187 ~~~--~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~  257 (355)
                      ...  .....++++|+++. +++....+.|..+++.....  ...+. ...+....+++.++|++.++....+
T Consensus       351 ~~~~~~~v~~v~fsp~~~~-l~s~~~d~tv~lwd~~~~~~--~~~l~-gH~~~V~sva~Sp~g~~l~Sgs~Dg  419 (524)
T 2j04_B          351 SRFRGSNLVPVVYCPQIYS-YIYSDGASSLRAVPSRAAFA--VHPLV-SRETTITAIGVSRLHPMVLAGSADG  419 (524)
T ss_dssp             EECSCCSCCCEEEETTTTE-EEEECSSSEEEEEETTCTTC--CEEEE-ECSSCEEEEECCSSCCBCEEEETTT
T ss_pred             cccccCcccceEeCCCcCe-EEEeCCCCcEEEEECccccc--ceeee-cCCCceEEEEeCCCCCeEEEEECCC
Confidence            111  12357999999985 55555667788888754221  12232 2333345677888887666554433

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=97.42  E-value=0.00069  Score=65.90  Aligned_cols=71  Identities=17%  Similarity=0.151  Sum_probs=50.7

Q ss_pred             CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccc--cccccEEEeCCCCEEEEE
Q 018474          132 SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGF--YFANGIALSKNEDFVVVC  207 (355)
Q Consensus       132 ~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~--~~pngi~~~~dg~~l~v~  207 (355)
                      ..|..|++|++|+||++.....-...     .+.......++.++|.+++++.+....  ....|++++||++.||+.
T Consensus       476 ~~PDNL~fd~~G~LwI~eDg~~~~~~-----~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn  548 (592)
T 3zwu_A          476 NSPDGLGFDKAGRLWILTDGDSSNAG-----DFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             CCEEEEEECTTCCEEEEECCCCCCSG-----GGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred             cCCcceEECCCCCEEEEecCCCcccc-----cccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence            67899999999999998654211111     111223457889999999988876543  345689999999988875

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=97.33  E-value=0.0076  Score=62.12  Aligned_cols=148  Identities=7%  Similarity=-0.068  Sum_probs=94.1

Q ss_pred             CCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCE-EEEeCCCcEEEEc-CCC-eEEEc-
Q 018474           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGV-ILCDNEKGLLKVT-EEG-VEAIV-  128 (355)
Q Consensus        53 ~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L-~v~~~~~gl~~~~-~~g-~~~~~-  128 (355)
                      .-.++++.+ +..|..++.++.|..+|..+++..........+. .++++++|+. +++...+.+..++ .++ ...+. 
T Consensus        60 ~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~-~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i  137 (902)
T 2oaj_A           60 AIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVFVPGKIT-SIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKL  137 (902)
T ss_dssp             CEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEECSSCEE-EEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEE
T ss_pred             CEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEcCCCCEE-EEEECCCCCEEEEEcCCCcEEEEECCCCcccccee
Confidence            346888885 6668888899999999998776443222334567 8899999875 4555444455666 344 32211 


Q ss_pred             -----------CCcCCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccc-------
Q 018474          129 -----------PDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGF-------  189 (355)
Q Consensus       129 -----------~~~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~-------  189 (355)
                                 .....+.+++++|++ .+.++...                 .+.+ .||.++++........       
T Consensus       138 ~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~-----------------dg~v-lWd~~~~~~~~~~~~~~~~g~~~  199 (902)
T 2oaj_A          138 DNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYE-----------------YVTL-TYSLVENEIKQSFIYELPPFAPG  199 (902)
T ss_dssp             CCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECS-----------------SCEE-EEETTTTEEEEEECCCBCTTCCC
T ss_pred             ccccccccccccCCCCeEEEEEccCCCCEEEEEeC-----------------CCcE-EEECCCCceEEEEecccCCcCCC
Confidence                       112568889999864 44444322                 4567 8888777643322211       


Q ss_pred             ------------cccccEEEeCCCCEEEEEeCCCCeEEEEEeCC
Q 018474          190 ------------YFANGIALSKNEDFVVVCESWKFRCRRYWLKG  221 (355)
Q Consensus       190 ------------~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~  221 (355)
                                  ...+.++++|||+.+ ++....+.|..|+++.
T Consensus       200 ~~~~~~~~~~h~~~V~~v~fspdg~~l-asgs~Dg~i~lWd~~~  242 (902)
T 2oaj_A          200 GDFSEKTNEKRTPKVIQSLYHPNSLHI-ITIHEDNSLVFWDANS  242 (902)
T ss_dssp             STTCCCTTSCBCCCEEEEEECTTSSEE-EEEETTCCEEEEETTT
T ss_pred             cccccccccccCCCeEEEEEcCCCCEE-EEEECCCeEEEEECCC
Confidence                        235678999999855 4445567888888754

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=97.30  E-value=0.1  Score=51.91  Aligned_cols=161  Identities=7%  Similarity=-0.014  Sum_probs=86.4

Q ss_pred             CceEEEeeCCCeEE-EEecC----CEEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCCC-------------
Q 018474           54 PEDVSVVVSKGALY-TATRD----GWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEK-------------  114 (355)
Q Consensus        54 p~~i~~d~~~g~l~-~~~~~----g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~~-------------  114 (355)
                      -.++.+.|++..+. ..+..    ..|+.+|..+|+............ ++++. ||+ |+++....             
T Consensus       131 l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~-~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~  208 (693)
T 3iuj_A          131 LDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFS-GISWL-GNEGFFYSSYDKPDGSELSARTDQH  208 (693)
T ss_dssp             EEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESC-CCEEE-TTTEEEEEESSCCC-------CCCC
T ss_pred             EEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceec-cEEEe-CCCEEEEEEecCcccccccccCCCc
Confidence            34557775555444 33333    357888988887554321111123 67777 665 66665432             


Q ss_pred             cEEEEc-CCC---eEEEcCCc----CCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCC--eEE
Q 018474          115 GLLKVT-EEG---VEAIVPDA----SFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLK--ETT  183 (355)
Q Consensus       115 gl~~~~-~~g---~~~~~~~~----~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~--~~~  183 (355)
                      .+++.+ .++   -+.+....    .+..++.+++||+ |+++....              .....++.+|.+++  +++
T Consensus       209 ~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~--------------~~~~~i~~~d~~~~~~~~~  274 (693)
T 3iuj_A          209 KVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANS--------------TSGNRLYVKDLSQENAPLL  274 (693)
T ss_dssp             EEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESS--------------SSCCEEEEEETTSTTCCCE
T ss_pred             EEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccC--------------CCCcEEEEEECCCCCCceE
Confidence            266665 232   22332221    2345678899995 55553321              11246888886555  455


Q ss_pred             EeeccccccccEEEeCCCCEEEEEeCC---CCeEEEEEeCCCCCcceeEec
Q 018474          184 VLHEGFYFANGIALSKNEDFVVVCESW---KFRCRRYWLKGDRAGILDAFI  231 (355)
Q Consensus       184 ~~~~~~~~pngi~~~~dg~~l~v~~~~---~~~i~~~~~~~~~~~~~~~~~  231 (355)
                      .+...... .--.++++|+.+|+....   ..+|+++++++......+.+.
T Consensus       275 ~l~~~~~~-~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~  324 (693)
T 3iuj_A          275 TVQGDLDA-DVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI  324 (693)
T ss_dssp             EEECSSSS-CEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE
T ss_pred             EEeCCCCc-eEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEe
Confidence            54433221 111267788877776543   368999998765433344444

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=97.23  E-value=0.063  Score=53.46  Aligned_cols=186  Identities=11%  Similarity=-0.003  Sum_probs=101.0

Q ss_pred             EEEEcC-CC-eEEEcCCc-------CCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEe
Q 018474          116 LLKVTE-EG-VEAIVPDA-------SFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL  185 (355)
Q Consensus       116 l~~~~~-~g-~~~~~~~~-------~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~  185 (355)
                      +++.+. .+ .+++.+..       ....++.++|||+ |.++...             .+.....|+.+|.++++....
T Consensus       100 l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~-------------~G~~~~~i~v~d~~tg~~~~~  166 (710)
T 2xdw_A          100 LYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSA-------------SGSDWVTIKFMKVDGAKELPD  166 (710)
T ss_dssp             EEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEE-------------TTCSCEEEEEEETTTTEEEEE
T ss_pred             EEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcC-------------CCCceEEEEEEECCCCCCCcc
Confidence            567663 44 55443221       2356788999995 4444221             011123689999998886543


Q ss_pred             eccccccccEEEeCCCCEEEEEeCCC---------------CeEEEEEeCCCCCcceeEeccc-CCCCcCceEECCCCCE
Q 018474          186 HEGFYFANGIALSKNEDFVVVCESWK---------------FRCRRYWLKGDRAGILDAFIEN-LPGGPDNINLAPDGSF  249 (355)
Q Consensus       186 ~~~~~~pngi~~~~dg~~l~v~~~~~---------------~~i~~~~~~~~~~~~~~~~~~~-~~g~p~~i~~d~~G~l  249 (355)
                      ........+++++|||+.++++....               ..|+++++.+........+... .+....++.+++||+.
T Consensus       167 ~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~  246 (710)
T 2xdw_A          167 VLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRY  246 (710)
T ss_dssp             EEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE
T ss_pred             cccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCE
Confidence            22112245799999999888876432               2488888754322112222211 1222346778999974


Q ss_pred             EEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCC------Ce-EEEEEECCCCCcccceeE
Q 018474          250 WIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGND------GK-IIRDFNDPDATYISFVTS  322 (355)
Q Consensus       250 wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------g~-~~~~~~~~~g~~~~~~~~  322 (355)
                      .+......                               ......|+.+|.++      ++ ....+..+...   ....
T Consensus       247 l~~~~~~~-------------------------------~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~---~~~~  292 (710)
T 2xdw_A          247 VLLSIREG-------------------------------CDPVNRLWYCDLQQESNGITGILKWVKLIDNFEG---EYDY  292 (710)
T ss_dssp             EEEEEECS-------------------------------SSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSS---CEEE
T ss_pred             EEEEEEcc-------------------------------CCCccEEEEEECcccccccCCccceEEeeCCCCc---EEEE
Confidence            44332210                               01124577777623      32 24455443332   1223


Q ss_pred             EEEeCCEEEEeecCC---CeEEEeeCCCC
Q 018474          323 AAEFDGNLYLASLQS---NFIGILPLDGP  348 (355)
Q Consensus       323 ~~~~~g~L~v~~~~~---~~i~~~~~~~~  348 (355)
                      +..++++||+.+...   ..|.++++.+.
T Consensus       293 ~s~dg~~l~~~s~~~~~~~~l~~~d~~~~  321 (710)
T 2xdw_A          293 VTNEGTVFTFKTNRHSPNYRLINIDFTDP  321 (710)
T ss_dssp             EEEETTEEEEEECTTCTTCEEEEEETTSC
T ss_pred             EeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence            445678888876533   36888887654

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.23  E-value=0.14  Score=49.81  Aligned_cols=108  Identities=14%  Similarity=0.111  Sum_probs=63.1

Q ss_pred             CCeEEEEecCCEEEEEEcCCCeeEEeeccCCC----------cccCeEECCCCCEEEEeCCCcEEEEc-CCC-eEE---E
Q 018474           63 KGALYTATRDGWVKYFILHNETLVNWKHIDSQ----------SLLGLTTTKDGGVILCDNEKGLLKVT-EEG-VEA---I  127 (355)
Q Consensus        63 ~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~----------p~~gl~~d~~g~L~v~~~~~gl~~~~-~~g-~~~---~  127 (355)
                      ++.+|+++..++|+.+|.++|+..--......          .. +++++ ++++|+++..+.|+.+| ++| ..-   +
T Consensus        68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~-g~a~~-~~~v~~~t~dg~l~AlD~~TG~~~W~~~~  145 (582)
T 1flg_A           68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNR-GAAIY-GDKVFFGTLDASVVALNKNTGKVVWKKKF  145 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCC-CCEEE-TTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred             CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCC-ccEEE-CCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence            78899998866699999999975311111111          13 55664 78999998777899999 478 321   1


Q ss_pred             cCCc---CCcccEEEcc---CC--cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEE
Q 018474          128 VPDA---SFTNDVIAAS---DG--TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV  184 (355)
Q Consensus       128 ~~~~---~~~~~l~~d~---dG--~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~  184 (355)
                      ....   .....-++..   +|  .+|+.....            +....+.++.+|+++|+...
T Consensus       146 ~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~------------e~~~~g~v~alD~~tG~~~W  198 (582)
T 1flg_A          146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGD------------EFGVVGRLFARDPDTGEEIW  198 (582)
T ss_dssp             SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCG------------GGCCBCEEEEECTTTCCEEE
T ss_pred             CCCCcCcccccCCEEeCCCcCCcEEEEEecccc------------ccCCCCEEEEEECCCCCEEe
Confidence            1110   0111112221   23  577654321            01125689999998887654

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=97.22  E-value=0.012  Score=56.86  Aligned_cols=134  Identities=11%  Similarity=0.087  Sum_probs=90.7

Q ss_pred             CCceEEEeeCCCeEEEEecCCEEEEEEcCCCee--------EEeec----cCCCcccCeEECCCCCEEEEeCCCcEEEEc
Q 018474           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETL--------VNWKH----IDSQSLLGLTTTKDGGVILCDNEKGLLKVT  120 (355)
Q Consensus        53 ~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~--------~~~~~----~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~  120 (355)
                      .-.++++.|++..|++++.+|.|..++..++..        ..+..    ...... ++++.++| +..+...+.+..++
T Consensus       131 sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~-sVawSPdg-Laass~D~tVrlWd  208 (588)
T 2j04_A          131 TYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVT-HIVWYEDV-LVAALSNNSVFSMT  208 (588)
T ss_dssp             CEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEE-EEEEETTE-EEEEETTCCEEEEC
T ss_pred             cEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEE-EEEEcCCc-EEEEeCCCeEEEEE
Confidence            356899999899999999999999999977742        22211    113567 88999999 76666656677777


Q ss_pred             C-CC-e----EEEc-CCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee-cccccc
Q 018474          121 E-EG-V----EAIV-PDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFYFA  192 (355)
Q Consensus       121 ~-~g-~----~~~~-~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~-~~~~~p  192 (355)
                      . ++ .    +.+. .....+.++++.  |+..++..                  .+.+..||..+++...+. .....-
T Consensus       209 ~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~------------------~~tIkLWd~~~~~~~~~~~gh~~~V  268 (588)
T 2j04_A          209 VSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC------------------PGYVHKIDLKNYSISSLKTGSLENF  268 (588)
T ss_dssp             CCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC------------------SSEEEEEETTTTEEEEEECSCCSCC
T ss_pred             CCCCccccceeeecccccCcEEEEEEE--CCEEEEEe------------------CCeEEEEECCCCeEEEEEcCCCceE
Confidence            4 33 2    2342 222578888887  44444321                  357999999888875554 333445


Q ss_pred             ccEEE--eCCCCEEEEEe
Q 018474          193 NGIAL--SKNEDFVVVCE  208 (355)
Q Consensus       193 ngi~~--~~dg~~l~v~~  208 (355)
                      .++++  +||+..+.++.
T Consensus       269 ~~va~~~s~d~~~La~a~  286 (588)
T 2j04_A          269 HIIPLNHEKESTILLMSN  286 (588)
T ss_dssp             CEEEETTCSSCEEEEECS
T ss_pred             EEEEeeeCCCCCEEEEEc
Confidence            78999  99997655554

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=97.18  E-value=0.044  Score=51.28  Aligned_cols=148  Identities=9%  Similarity=0.021  Sum_probs=88.9

Q ss_pred             CCceEEEeeCCCeEEEEecCCEEEEEEcCC-----------CeeEEe-----eccCCCcccCeEECCCCCEEE----EeC
Q 018474           53 HPEDVSVVVSKGALYTATRDGWVKYFILHN-----------ETLVNW-----KHIDSQSLLGLTTTKDGGVIL----CDN  112 (355)
Q Consensus        53 ~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~-----------g~~~~~-----~~~~~~p~~gl~~d~~g~L~v----~~~  112 (355)
                      .-..+++.+.++.++++..++ +..++..+           ......     ......+. +++++++|++.+    +..
T Consensus        38 ~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~l~~spdg~~lav~~~sgs  115 (434)
T 2oit_A           38 RSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIH-HLALSCDNLTLSACMMSSE  115 (434)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEE-EEEECTTSCEEEEEEEETT
T ss_pred             CccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCccc-EEEEcCCCCEEEEEEeccC
Confidence            456788887788888887776 65544310           011111     11123467 899999998665    333


Q ss_pred             CCc-EEEEc-CC---------C-eEEEcC---CcCCcccEEEccC-CcEEEEeCCCCCCCccccccccccCCCCeEEEEe
Q 018474          113 EKG-LLKVT-EE---------G-VEAIVP---DASFTNDVIAASD-GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYD  176 (355)
Q Consensus       113 ~~g-l~~~~-~~---------g-~~~~~~---~~~~~~~l~~d~d-G~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~d  176 (355)
                      .++ +..++ .+         . +..+..   ....+.++++.|+ ++++++.+.                 .+.+..||
T Consensus       116 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~-----------------Dg~v~iwD  178 (434)
T 2oit_A          116 YGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLA-----------------DGSIAVLQ  178 (434)
T ss_dssp             TEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEET-----------------TSCEEEEE
T ss_pred             CCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEEC-----------------CCeEEEEE
Confidence            344 33444 11         1 111111   1256888999997 677776433                 56788888


Q ss_pred             CCCCeEEEeecc-ccccccEEEeCCCCEEEEEeCCCCeEEEEEeC
Q 018474          177 PKLKETTVLHEG-FYFANGIALSKNEDFVVVCESWKFRCRRYWLK  220 (355)
Q Consensus       177 p~~~~~~~~~~~-~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~  220 (355)
                      .++++......+ ......++++|||+.++.+. ..+.|..|+++
T Consensus       179 ~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs-~dg~v~iwd~~  222 (434)
T 2oit_A          179 VTETVKVCATLPSTVAVTSVCWSPKGKQLAVGK-QNGTVVQYLPT  222 (434)
T ss_dssp             ESSSEEEEEEECGGGCEEEEEECTTSSCEEEEE-TTSCEEEECTT
T ss_pred             cCCCcceeeccCCCCceeEEEEcCCCCEEEEEc-CCCcEEEEccC
Confidence            876643322212 23467899999999776665 56788888875

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=97.18  E-value=0.017  Score=52.33  Aligned_cols=133  Identities=15%  Similarity=0.097  Sum_probs=78.4

Q ss_pred             EecCCEEEEEEcCCCe-----------------eEEeeccCCCcccCeEECCCCCEEEEeCCCc--EEEEc-CCC--eEE
Q 018474           69 ATRDGWVKYFILHNET-----------------LVNWKHIDSQSLLGLTTTKDGGVILCDNEKG--LLKVT-EEG--VEA  126 (355)
Q Consensus        69 ~~~~g~i~~~~~~~g~-----------------~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~g--l~~~~-~~g--~~~  126 (355)
                      +..+|.|..+|..+++                 ...+......+. ++++.++|++.++...++  +..++ .++  +..
T Consensus       155 g~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~-~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~  233 (355)
T 3vu4_A          155 EFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIK-MVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVRE  233 (355)
T ss_dssp             SSCTTCEEEEECCC------------------CCEEECCCSSCEE-EEEECTTSSEEEEEETTCSEEEEEETTTCCEEEE
T ss_pred             CCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceE-EEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence            3567888888886654                 233322234567 899999999777665556  44445 456  555


Q ss_pred             EcC--CcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeE---EEe----------------
Q 018474          127 IVP--DASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKET---TVL----------------  185 (355)
Q Consensus       127 ~~~--~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~---~~~----------------  185 (355)
                      +..  ....+++++++++|++.++.+.                 .+.+..||...+..   ..+                
T Consensus       234 ~~~g~h~~~v~~~~~s~~~~~l~s~s~-----------------d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (355)
T 3vu4_A          234 FRRGLDRADVVDMKWSTDGSKLAVVSD-----------------KWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLC  296 (355)
T ss_dssp             EECTTCCSCEEEEEECTTSCEEEEEET-----------------TCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSE
T ss_pred             EEcCCCCCcEEEEEECCCCCEEEEEEC-----------------CCEEEEEEccCCCCcccccccceeecccccccccee
Confidence            542  3367899999999987776443                 34455555433211   100                


Q ss_pred             ----ecc-ccccccEEEeCCCCEEEEEeCCCCeEEEEEeC
Q 018474          186 ----HEG-FYFANGIALSKNEDFVVVCESWKFRCRRYWLK  220 (355)
Q Consensus       186 ----~~~-~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~  220 (355)
                          ... ......+++++|++.+++. ...+.+..|++.
T Consensus       297 ~~~~~~~~~~~~~~~a~~~d~~~l~~~-~~dg~~~~~~~~  335 (355)
T 3vu4_A          297 NFKLSVDKHVRGCKIAWISESSLVVVW-PHTRMIETFKVV  335 (355)
T ss_dssp             EEECCCCTTCCCCEEEESSSSEEEEEE-TTTTEEEEEEEE
T ss_pred             EEEeccCCCCCceEEEEeCCCCEEEEE-eCCCeEEEEEEE
Confidence                000 0001457899999855554 456778777764

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.17  E-value=0.034  Score=55.23  Aligned_cols=84  Identities=13%  Similarity=0.059  Sum_probs=49.1

Q ss_pred             CCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCC-CcceeEecccCCCCcCceEECCCC
Q 018474          169 YGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDR-AGILDAFIENLPGGPDNINLAPDG  247 (355)
Q Consensus       169 ~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~g~p~~i~~d~~G  247 (355)
                      .|.|+.+|+++++............+..+...+..+|+. +..+.|+.++.+..+ +...+  . .......-+....+|
T Consensus       437 ~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g-~~dg~l~a~d~~tG~~l~~~~--~-~~~~~~~p~~~~~~G  512 (668)
T 1kv9_A          437 SGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQG-TAAGQMHAYSADKGEALWQFE--A-QSGIVAAPMTFELAG  512 (668)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEE-CTTSEEEEEETTTCCEEEEEE--C-SSCCCSCCEEEEETT
T ss_pred             cceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEE-CCcccchhhhhhcChhheEec--C-CCCcccCceEEEECC
Confidence            378999999999876544332223455555566667776 567899999975332 21211  1 111111223434578


Q ss_pred             CEEEEeecC
Q 018474          248 SFWIGLIKM  256 (355)
Q Consensus       248 ~lwv~~~~~  256 (355)
                      ++||+...+
T Consensus       513 ~~yva~~~G  521 (668)
T 1kv9_A          513 RQYVAIMAG  521 (668)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEec
Confidence            888887654

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=97.09  E-value=0.27  Score=49.17  Aligned_cols=157  Identities=7%  Similarity=-0.046  Sum_probs=81.7

Q ss_pred             eCCCeEEEEec-----CCEEEEEEcC---CCeeEEeeccC-----C--CcccCeEECCCCCEEE--EeCCC----cEEEE
Q 018474           61 VSKGALYTATR-----DGWVKYFILH---NETLVNWKHID-----S--QSLLGLTTTKDGGVIL--CDNEK----GLLKV  119 (355)
Q Consensus        61 ~~~g~l~~~~~-----~g~i~~~~~~---~g~~~~~~~~~-----~--~p~~gl~~d~~g~L~v--~~~~~----gl~~~  119 (355)
                      ++++.+|....     ...|++.+..   +++.+.+....     +  ... ++++.+||+..+  .+..+    .|+.+
T Consensus       116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~-~~~~SPDG~~la~~~~~~G~e~~~i~v~  194 (741)
T 1yr2_A          116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALD-AWAASDDGRLLAYSVQDGGSDWRTVKFV  194 (741)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEE-EEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred             EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEE-eEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence            35777665433     2467888865   55555542211     1  234 678889997433  33222    26677


Q ss_pred             c-CCC-eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeE--EEeecccc---cc
Q 018474          120 T-EEG-VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKET--TVLHEGFY---FA  192 (355)
Q Consensus       120 ~-~~g-~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~--~~~~~~~~---~p  192 (355)
                      + .+| ............++++++|..|+++....... .   ...........|++++..+++.  +.+.....   ..
T Consensus       195 dl~tg~~~~~~~~~~~~~~~~wspD~~l~~~~~~~~~~-~---~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~  270 (741)
T 1yr2_A          195 GVADGKPLADELKWVKFSGLAWLGNDALLYSRFAEPKE-G---QAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRG  270 (741)
T ss_dssp             ETTTCCEEEEEEEEEESCCCEESTTSEEEEEECCCC------------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCE
T ss_pred             ECCCCCCCCccCCCceeccEEEECCCEEEEEEecCccc-c---cccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEE
Confidence            7 455 33221111123577888885576664321100 0   0000001123588888766541  22222211   23


Q ss_pred             ccEEEeCCCCEEEEEeCC----CCeEEEEEeCCC
Q 018474          193 NGIALSKNEDFVVVCESW----KFRCRRYWLKGD  222 (355)
Q Consensus       193 ngi~~~~dg~~l~v~~~~----~~~i~~~~~~~~  222 (355)
                      .++.++|||+.++++...    ...|+.+++++.
T Consensus       271 ~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~  304 (741)
T 1yr2_A          271 HGASVSSDGRWVVITSSEGTDPVNTVHVARVTNG  304 (741)
T ss_dssp             EEEEECTTSCEEEEEEECTTCSCCEEEEEEEETT
T ss_pred             EEEEECCCCCEEEEEEEccCCCcceEEEEECCCC
Confidence            478899999987776532    458999988653

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.08  E-value=0.045  Score=54.52  Aligned_cols=84  Identities=17%  Similarity=0.078  Sum_probs=49.7

Q ss_pred             CCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCC-CcceeEecccCCCCcCceEECCCC
Q 018474          169 YGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDR-AGILDAFIENLPGGPDNINLAPDG  247 (355)
Q Consensus       169 ~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~g~p~~i~~d~~G  247 (355)
                      .|.|..+|++|++...........++-.++..+..+|+. +..+.|+.||.+..+ +.+.+  . .......-+....+|
T Consensus       454 ~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g-t~dg~l~a~D~~tG~~lw~~~--~-~~~~~~~p~ty~~~G  529 (689)
T 1yiq_A          454 SGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEG-SADGRVIAYAADTGEKLWEQP--A-ASGVMAAPVTYSVDG  529 (689)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEE-CTTSEEEEEETTTCCEEEEEE--C-SSCCCSCCEEEEETT
T ss_pred             ceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEE-CCCCcEEEEECCCCccceeee--C-CCCcccCceEEEECC
Confidence            378999999999876543322222344566666656665 667899999975432 22221  1 111112225555679


Q ss_pred             CEEEEeecC
Q 018474          248 SFWIGLIKM  256 (355)
Q Consensus       248 ~lwv~~~~~  256 (355)
                      +.||+...+
T Consensus       530 ~qyv~~~~G  538 (689)
T 1yiq_A          530 EQYVTFMAG  538 (689)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEec
Confidence            999887654

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=97.07  E-value=0.16  Score=45.76  Aligned_cols=226  Identities=10%  Similarity=0.003  Sum_probs=124.0

Q ss_pred             CCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEE-EEeCCCc-EEEEc-CCC--eEE
Q 018474           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVI-LCDNEKG-LLKVT-EEG--VEA  126 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~-v~~~~~g-l~~~~-~~g--~~~  126 (355)
                      ..-.++++.+++..|.+++.+ ++..++..+++........ ... .+.+..++++. ++....+ +..++ .++  +..
T Consensus        20 ~~V~~v~fs~dg~~la~g~~~-~~~iw~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~   96 (355)
T 3vu4_A           20 NPVTDYEFNQDQSCLILSTLK-SFEIYNVHPVAHIMSQEMR-HLS-KVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSR   96 (355)
T ss_dssp             CCCCEEEECTTSSEEEEECSS-EEEEEEETTEEEEEEEECS-CCC-EEEECTTSSEEEEECSSTTEEEEEETTTTEEEEE
T ss_pred             CceEEEEECCCCCEEEEEcCC-EEEEEecCCcceeeeeecC-CeE-EEEEcCCCCEEEEEECCccEEEEEECCCCcEEEE
Confidence            456789999555555555544 5777887665543322211 233 45566555544 4433434 44555 456  443


Q ss_pred             EcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCC-eE-EEeecccccccc-EEEeCCCCE
Q 018474          127 IVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLK-ET-TVLHEGFYFANG-IALSKNEDF  203 (355)
Q Consensus       127 ~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~-~~-~~~~~~~~~png-i~~~~dg~~  203 (355)
                      +... ..+.++.+++++.+...                    .+.+..||..++ +. ..+..    +.+ .++++  +.
T Consensus        97 ~~~~-~~v~~v~~~~~~~~~~~--------------------~~~i~i~d~~~~~~~~~~~~~----~~~~~~~s~--~~  149 (355)
T 3vu4_A           97 IKVD-APVKDLFLSREFIVVSY--------------------GDVISVFKFGNPWKRITDDIR----FGGVCEFSN--GL  149 (355)
T ss_dssp             EECS-SCEEEEEECSSEEEEEE--------------------TTEEEEEESSTTCCBSSCCEE----EEEEEEEET--TE
T ss_pred             EECC-CceEEEEEcCCEEEEEE--------------------cCEEEEEECCCCceeeEEecc----CCceEEEEc--cE
Confidence            3322 45667777665433222                    235777776554 21 11111    333 34555  44


Q ss_pred             EEEE-eCCCCeEEEEEeCCCCC-------------cc-eeEecccCCCCcCceEECCCCCEEEEeecCCchhhHhhhcch
Q 018474          204 VVVC-ESWKFRCRRYWLKGDRA-------------GI-LDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCR  268 (355)
Q Consensus       204 l~v~-~~~~~~i~~~~~~~~~~-------------~~-~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~  268 (355)
                      +.++ ....+.|..|+++....             .. ...+. ...+....+.++++|++.++....            
T Consensus       150 la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~-~h~~~v~~~~~s~~g~~l~s~s~d------------  216 (355)
T 3vu4_A          150 LVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIK-AHTNPIKMVRLNRKSDMVATCSQD------------  216 (355)
T ss_dssp             EEEEESSCTTCEEEEECCC------------------CCEEEC-CCSSCEEEEEECTTSSEEEEEETT------------
T ss_pred             EEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEE-ccCCceEEEEECCCCCEEEEEeCC------------
Confidence            5555 56677888888854220             00 12222 223334567889999877776542            


Q ss_pred             hHHHHHHhccchhhcccCCCCCCceE-EEEEeCCCCeEEEEEEC--CCCCcccceeEEEEeC-CEEEEeecCCCeEEEee
Q 018474          269 EKWELLDAYPGLISLLLPMGSDAGAR-VVKVDGNDGKIIRDFND--PDATYISFVTSAAEFD-GNLYLASLQSNFIGILP  344 (355)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~g~~~~~~~~--~~g~~~~~~~~~~~~~-g~L~v~~~~~~~i~~~~  344 (355)
                                              +. |..+|..+++.+..+..  ..    ..+..+.... +++.+.......|...+
T Consensus       217 ------------------------~~~v~iwd~~~~~~~~~~~~g~h~----~~v~~~~~s~~~~~l~s~s~d~~v~iw~  268 (355)
T 3vu4_A          217 ------------------------GTIIRVFKTEDGVLVREFRRGLDR----ADVVDMKWSTDGSKLAVVSDKWTLHVFE  268 (355)
T ss_dssp             ------------------------CSEEEEEETTTCCEEEEEECTTCC----SCEEEEEECTTSCEEEEEETTCEEEEEE
T ss_pred             ------------------------CCEEEEEECCCCcEEEEEEcCCCC----CcEEEEEECCCCCEEEEEECCCEEEEEE
Confidence                                    33 66678767888888863  23    2466666653 55555555578888888


Q ss_pred             CCCC
Q 018474          345 LDGP  348 (355)
Q Consensus       345 ~~~~  348 (355)
                      ++..
T Consensus       269 ~~~~  272 (355)
T 3vu4_A          269 IFND  272 (355)
T ss_dssp             SSCC
T ss_pred             ccCC
Confidence            8654

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=97.04  E-value=0.14  Score=44.55  Aligned_cols=144  Identities=9%  Similarity=0.059  Sum_probs=83.3

Q ss_pred             ceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeecc---CCCcccCeEECCCCCEEEEeCCCcEEEE-c-CCC--eEEE
Q 018474           55 EDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI---DSQSLLGLTTTKDGGVILCDNEKGLLKV-T-EEG--VEAI  127 (355)
Q Consensus        55 ~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~---~~~p~~gl~~d~~g~L~v~~~~~gl~~~-~-~~g--~~~~  127 (355)
                      ..|++. .++.|-++ .++.|+.+|..+|+.......   ...+. ++++.++|+.+++...+|.+++ + .++  +..+
T Consensus        29 ~~l~WS-~~~~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~-~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~  105 (318)
T 4ggc_A           29 NLVDWS-SGNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYIS-SVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM  105 (318)
T ss_dssp             BCEEEC-TTSEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEE-EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             eEEEEC-CCCEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEE-EEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence            568888 56655555 489999999999876654332   23466 8999999987665555564444 5 355  4444


Q ss_pred             cCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCe--EEEeeccccccccEEEeCCCCEEE
Q 018474          128 VPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE--TTVLHEGFYFANGIALSKNEDFVV  205 (355)
Q Consensus       128 ~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~--~~~~~~~~~~pngi~~~~dg~~l~  205 (355)
                      .......  ..+..++.+.++.+.                 .+.+..++..++.  ...+.........++++++++.++
T Consensus       106 ~~h~~~~--~~~~~~~~~l~s~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  166 (318)
T 4ggc_A          106 TSHSARV--GSLSWNSYILSSGSR-----------------SGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLA  166 (318)
T ss_dssp             ECCSSCE--EEEEEETTEEEEEET-----------------TSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             cCccceE--EEeecCCCEEEEEec-----------------CCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEE
Confidence            3322222  233444544444322                 3344444443332  222222334456678889998555


Q ss_pred             EEeCCCCeEEEEEeCC
Q 018474          206 VCESWKFRCRRYWLKG  221 (355)
Q Consensus       206 v~~~~~~~i~~~~~~~  221 (355)
                      . ....+.|..+++..
T Consensus       167 s-~~~d~~i~iwd~~~  181 (318)
T 4ggc_A          167 S-GGNDNLVNVWPSAP  181 (318)
T ss_dssp             E-EETTSCEEEEESSC
T ss_pred             E-EecCcceeEEECCC
Confidence            4 44567888888754

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=96.92  E-value=0.019  Score=53.77  Aligned_cols=151  Identities=13%  Similarity=0.084  Sum_probs=86.5

Q ss_pred             CCceEEEeeCCCeEEE----EecCCEEEEEEcCCC-----ee----EEeec---cCCCcccCeEECCC-CCEEEEeCCCc
Q 018474           53 HPEDVSVVVSKGALYT----ATRDGWVKYFILHNE-----TL----VNWKH---IDSQSLLGLTTTKD-GGVILCDNEKG  115 (355)
Q Consensus        53 ~p~~i~~d~~~g~l~~----~~~~g~i~~~~~~~g-----~~----~~~~~---~~~~p~~gl~~d~~-g~L~v~~~~~g  115 (355)
                      ...++++.+++..|++    ++.++.|..+|..++     +.    ..+..   ....+. ++++.++ ++++++...+|
T Consensus        94 ~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~v~~~p~~~~~las~s~Dg  172 (434)
T 2oit_A           94 PIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVI-DMKWNPTVPSMVAVCLADG  172 (434)
T ss_dssp             CEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEE-EEEECSSCTTEEEEEETTS
T ss_pred             cccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceE-EEEECCCCCCEEEEEECCC
Confidence            4788999976666774    445788888887443     11    11111   134567 8999887 67666443444


Q ss_pred             -EEEEc-CCC--eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccc--
Q 018474          116 -LLKVT-EEG--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGF--  189 (355)
Q Consensus       116 -l~~~~-~~g--~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~--  189 (355)
                       +..++ .++  ..........+.+++++++|+..++.+.                 .+.+..||.+......+....  
T Consensus       173 ~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~-----------------dg~v~iwd~~~~~~~~~~~~~~~  235 (434)
T 2oit_A          173 SIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQ-----------------NGTVVQYLPTLQEKKVIPCPPFY  235 (434)
T ss_dssp             CEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEET-----------------TSCEEEECTTCCEEEEECCCTTC
T ss_pred             eEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcC-----------------CCcEEEEccCCcccccccCCccc
Confidence             55556 455  2222222257889999999965544322                 467888988733333222111  


Q ss_pred             -----cccccEEEeCCCCEEEEEeCCC------CeEEEEEeCC
Q 018474          190 -----YFANGIALSKNEDFVVVCESWK------FRCRRYWLKG  221 (355)
Q Consensus       190 -----~~pngi~~~~dg~~l~v~~~~~------~~i~~~~~~~  221 (355)
                           .....+++++++.++.......      ..+..+++..
T Consensus       236 ~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~  278 (434)
T 2oit_A          236 ESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPK  278 (434)
T ss_dssp             CTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCC
T ss_pred             CCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEecc
Confidence                 1234677888776554444333      2366777753

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=96.80  E-value=0.19  Score=49.94  Aligned_cols=180  Identities=13%  Similarity=0.049  Sum_probs=94.6

Q ss_pred             ceEEEeeCCCeEEEEecCCE-------------EEEEEcCCCee--EEeeccC---CCcccCeEECCCCC-EEEEeCCC-
Q 018474           55 EDVSVVVSKGALYTATRDGW-------------VKYFILHNETL--VNWKHID---SQSLLGLTTTKDGG-VILCDNEK-  114 (355)
Q Consensus        55 ~~i~~d~~~g~l~~~~~~g~-------------i~~~~~~~g~~--~~~~~~~---~~p~~gl~~d~~g~-L~v~~~~~-  114 (355)
                      .++++.+++..|+.+..+..             |++++..+++.  ..+....   .... ++.++++|+ |.++...+ 
T Consensus       171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~-~~~~SpDG~~l~~~~~~~~  249 (695)
T 2bkl_A          171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFL-QSDLSRDGKYLFVYILRGW  249 (695)
T ss_dssp             CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEE-EEEECTTSCCEEEEEEETT
T ss_pred             cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEE-EEEECCCCCEEEEEEeCCC
Confidence            57889876777777765443             99999876652  2222211   2345 678889986 44443233 


Q ss_pred             ---cEEEEcC-CC-eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCe---EEEee
Q 018474          115 ---GLLKVTE-EG-VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE---TTVLH  186 (355)
Q Consensus       115 ---gl~~~~~-~g-~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~---~~~~~  186 (355)
                         .++.++. ++ .+.+..........+. ++|.+|+....              ....+.|+++|.++++   ++.+.
T Consensus       250 ~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~l~~~s~~--------------~~~~~~l~~~d~~~~~~~~~~~l~  314 (695)
T 2bkl_A          250 SENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDRFYVLTDE--------------GAPRQRVFEVDPAKPARASWKEIV  314 (695)
T ss_dssp             TEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTEEEEEECT--------------TCTTCEEEEEBTTBCSGGGCEEEE
T ss_pred             CceEEEEEcCCCCceEEeecCCCceEEEEe-cCCcEEEEECC--------------CCCCCEEEEEeCCCCCccCCeEEe
Confidence               4777763 55 5555443322333333 55557776432              1225689999987665   24343


Q ss_pred             cc--ccccccEEEeCCCCEEEEEeCCC--CeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCC-EEEEeec
Q 018474          187 EG--FYFANGIALSKNEDFVVVCESWK--FRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGS-FWIGLIK  255 (355)
Q Consensus       187 ~~--~~~pngi~~~~dg~~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~~  255 (355)
                      ..  .....+++++ ++ .++++....  .+|+.+++++.   ..+.+.....+...++..+++|. ++++...
T Consensus       315 ~~~~~~~l~~~~~~-~~-~lv~~~~~dg~~~l~~~~~~g~---~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss  383 (695)
T 2bkl_A          315 PEDSSASLLSVSIV-GG-HLSLEYLKDATSEVRVATLKGK---PVRTVQLPGVGAASNLMGLEDLDDAYYVFTS  383 (695)
T ss_dssp             CCCSSCEEEEEEEE-TT-EEEEEEEETTEEEEEEEETTCC---EEEECCCSSSSEECCCBSCTTCSEEEEEEEE
T ss_pred             cCCCCCeEEEEEEE-CC-EEEEEEEECCEEEEEEEeCCCC---eeEEecCCCCeEEEEeecCCCCCEEEEEEcC
Confidence            22  1223456777 44 466665433  35666665432   11211101112223455566674 5555443

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=96.58  E-value=0.028  Score=53.99  Aligned_cols=117  Identities=17%  Similarity=0.150  Sum_probs=73.5

Q ss_pred             ccccEEEeCCCCEEEEEeCC---------------------CCeEEEEEeCCCC----CcceeEecc-cC----------
Q 018474          191 FANGIALSKNEDFVVVCESW---------------------KFRCRRYWLKGDR----AGILDAFIE-NL----------  234 (355)
Q Consensus       191 ~pngi~~~~dg~~l~v~~~~---------------------~~~i~~~~~~~~~----~~~~~~~~~-~~----------  234 (355)
                      .|.+++++|....+|++-+.                     .+.|+++..++..    ..+.++++. ..          
T Consensus       385 RpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~~~~~~  464 (592)
T 4a9v_A          385 RPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGTPKG  464 (592)
T ss_dssp             CEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTSGGG
T ss_pred             CccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCccccccccc
Confidence            47789999865569998664                     1679999875421    112343321 00          


Q ss_pred             ----------CCCcCceEECCCCCEEEEeecCCc--hhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCC
Q 018474          235 ----------PGGPDNINLAPDGSFWIGLIKMNQ--TGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGND  302 (355)
Q Consensus       235 ----------~g~p~~i~~d~~G~lwv~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  302 (355)
                                -..||++++|++|+||+++-..-.  ...                          -......+++++|.+
T Consensus       465 g~~~~~~~~~fnsPDnL~fd~~G~LWf~TD~~~~~~g~~--------------------------~~~gnn~v~~~dp~t  518 (592)
T 4a9v_A          465 GSSNITPQNMFNSPDGLGFDKAGRLWILTDGDSSNAGDF--------------------------AGMGNNQMLCADPAT  518 (592)
T ss_dssp             CCTTCCTTTCCCCEEEEEECTTCCEEEEECCCCCCSGGG--------------------------TTCCSCEEEEECTTT
T ss_pred             CccCccccCccCCCCceEECCCCCEEEEeCCCcCccccc--------------------------cccCCceEEEEeCCC
Confidence                      124899999999999996644210  000                          012234799999967


Q ss_pred             CeEEEEEECCCCCcccceeEEEEe--CCEEEEeecC
Q 018474          303 GKIIRDFNDPDATYISFVTSAAEF--DGNLYLASLQ  336 (355)
Q Consensus       303 g~~~~~~~~~~g~~~~~~~~~~~~--~g~L~v~~~~  336 (355)
                      |++...+..|.+.   .+++++..  +..|||.-.+
T Consensus       519 Gel~~fl~~P~~a---EpnGiafSPD~ktLfV~vQH  551 (592)
T 4a9v_A          519 GEIRRFMVGPIGC---EVTGISFSPDQKTLFVGIQH  551 (592)
T ss_dssp             CCEEEEEECCTTC---EEEEEEECTTSSEEEEEEES
T ss_pred             CeEEEEEeCCCCc---cccCCEECCCCCEEEEEEeC
Confidence            8877767666653   56677765  4689997643

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=96.53  E-value=0.048  Score=53.03  Aligned_cols=119  Identities=17%  Similarity=0.129  Sum_probs=75.3

Q ss_pred             cccccEEEeCCCCEEEEEeCC---------------------CCeEEEEEeCCCCC----cceeEecc-c----------
Q 018474          190 YFANGIALSKNEDFVVVCESW---------------------KFRCRRYWLKGDRA----GILDAFIE-N----------  233 (355)
Q Consensus       190 ~~pngi~~~~dg~~l~v~~~~---------------------~~~i~~~~~~~~~~----~~~~~~~~-~----------  233 (355)
                      ..|.++.++|....+|++-+.                     .+.|++|..++...    ...+.++. .          
T Consensus       384 ~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~~~~~  463 (592)
T 3zwu_A          384 DRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGTPK  463 (592)
T ss_dssp             ECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTSGG
T ss_pred             eccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCccccccccc
Confidence            357789999754459998764                     25799998754221    11222221 0          


Q ss_pred             ----------CCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCC
Q 018474          234 ----------LPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDG  303 (355)
Q Consensus       234 ----------~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g  303 (355)
                                .-..||||.+|++|+|||++-......-.+.                        ...+..++.+++.+|
T Consensus       464 ~~~~~~~~~~~f~~PDNL~fd~~G~LwI~eDg~~~~~~~~~------------------------~~gnn~~~~~~~~~g  519 (592)
T 3zwu_A          464 GGSSNITPQNMFNSPDGLGFDKAGRLWILTDGDSSNAGDFA------------------------GMGNNQMLCADPATG  519 (592)
T ss_dssp             GCCTTCCTTTCCCCEEEEEECTTCCEEEEECCCCCCSGGGT------------------------TTCSCEEEEECTTTC
T ss_pred             ccccccCCCCCccCCcceEECCCCCEEEEecCCCccccccc------------------------ccccceEEEEeCCCC
Confidence                      0124899999999999999976432111100                        122346788888678


Q ss_pred             eEEEEEECCCCCcccceeEEEEeC--CEEEEeec
Q 018474          304 KIIRDFNDPDATYISFVTSAAEFD--GNLYLASL  335 (355)
Q Consensus       304 ~~~~~~~~~~g~~~~~~~~~~~~~--g~L~v~~~  335 (355)
                      +....+..|.|.   .++++++..  ..||+.-.
T Consensus       520 ~~~rf~~~P~ga---E~TG~~fspDg~tlfvniQ  550 (592)
T 3zwu_A          520 EIRRFMVGPIGC---EVTGISFSPDQKTLFVGIQ  550 (592)
T ss_dssp             CEEEEEECCTTC---EEEEEEECTTSSEEEEEEE
T ss_pred             eEEEEEeCCCCc---cCcCeeECCCCCEEEEEEE
Confidence            888778888764   577777653  67888644

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=96.39  E-value=0.38  Score=47.74  Aligned_cols=166  Identities=13%  Similarity=0.057  Sum_probs=91.1

Q ss_pred             CcccEEEccCCc-EEE-EeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCC
Q 018474          133 FTNDVIAASDGT-LYF-TVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESW  210 (355)
Q Consensus       133 ~~~~l~~d~dG~-ly~-~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~  210 (355)
                      .+.++.++|||+ |-+ .+..              +.....|+.+|.++++............+++++ |++.++++...
T Consensus       130 ~l~~~~~SpDg~~lAy~~~~~--------------G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~  194 (693)
T 3iuj_A          130 ALDQLSFSRDGRILAYSLSLA--------------GSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYD  194 (693)
T ss_dssp             EEEEEEECTTSSEEEEEEECS--------------SCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESS
T ss_pred             EEEEEEECCCCCEEEEEEecC--------------CCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEec
Confidence            456678999995 333 3322              111236889999988754331111113467999 99988887654


Q ss_pred             C------------CeEEEEEeCCCCCcceeEeccc--CCCCcCceEECCCCCEE-EEeecCCchhhHhhhcchhHHHHHH
Q 018474          211 K------------FRCRRYWLKGDRAGILDAFIEN--LPGGPDNINLAPDGSFW-IGLIKMNQTGVRAIQKCREKWELLD  275 (355)
Q Consensus       211 ~------------~~i~~~~~~~~~~~~~~~~~~~--~~g~p~~i~~d~~G~lw-v~~~~~~~~~~~~~~~~~~~~~~~~  275 (355)
                      .            ..|+++++.........++-+.  .+..-.++.+++||+.. ++....                   
T Consensus       195 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~-------------------  255 (693)
T 3iuj_A          195 KPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANS-------------------  255 (693)
T ss_dssp             CCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESS-------------------
T ss_pred             CcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccC-------------------
Confidence            2            4588888744322222222211  11112345688999744 443321                   


Q ss_pred             hccchhhcccCCCCCCceEEEEEeCCCCe-EEEEEECCCCCcccceeEEEEeCCEEEEeecC---CCeEEEeeCCCCC
Q 018474          276 AYPGLISLLLPMGSDAGARVVKVDGNDGK-IIRDFNDPDATYISFVTSAAEFDGNLYLASLQ---SNFIGILPLDGPE  349 (355)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~v~~~~~~~g~-~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~---~~~i~~~~~~~~~  349 (355)
                                    .....++.++.++++ ....+..+.+.   ....+..++++||+.+..   ...|.++++.+..
T Consensus       256 --------------~~~~~i~~~d~~~~~~~~~~l~~~~~~---~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~  316 (693)
T 3iuj_A          256 --------------TSGNRLYVKDLSQENAPLLTVQGDLDA---DVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPG  316 (693)
T ss_dssp             --------------SSCCEEEEEETTSTTCCCEEEECSSSS---CEEEEEEETTEEEEEECTTCTTCEEEEEETTSCC
T ss_pred             --------------CCCcEEEEEECCCCCCceEEEeCCCCc---eEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCC
Confidence                          111367777753332 34455554332   122244567898887654   3678888887644

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=96.37  E-value=0.57  Score=42.67  Aligned_cols=138  Identities=15%  Similarity=0.080  Sum_probs=76.0

Q ss_pred             eEEEEecCCEEEEEEcCCCeeEEee---cc---CCCcccCeEECC--------CCCEEEEeCCCcEEEE-c-CCC--eEE
Q 018474           65 ALYTATRDGWVKYFILHNETLVNWK---HI---DSQSLLGLTTTK--------DGGVILCDNEKGLLKV-T-EEG--VEA  126 (355)
Q Consensus        65 ~l~~~~~~g~i~~~~~~~g~~~~~~---~~---~~~p~~gl~~d~--------~g~L~v~~~~~gl~~~-~-~~g--~~~  126 (355)
                      .+..+..|+.|..++..+++.....   ..   .+.+. .+++.+        +|++++....++.+++ + .++  ...
T Consensus       103 ~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~-~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~  181 (393)
T 4gq1_A          103 FLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVN-DIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILA  181 (393)
T ss_dssp             EEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEE-EEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEE
T ss_pred             EEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceE-EEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeee
Confidence            3455677898988888777543321   11   23456 777764        6777776656665555 4 343  333


Q ss_pred             EcCCcCCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeec------------------
Q 018474          127 IVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE------------------  187 (355)
Q Consensus       127 ~~~~~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~------------------  187 (355)
                      +......+.++++.|++ ++.++.+.                 .+.+..||..+++......                  
T Consensus       182 ~~~~~~~v~~v~~~p~~~~~l~~~~~-----------------d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~  244 (393)
T 4gq1_A          182 GYPLSSPGISVQFRPSNPNQLIVGER-----------------NGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPL  244 (393)
T ss_dssp             EEECSSCEEEEEEETTEEEEEEEEET-----------------TSEEEEEETTCCC----------CSCCCSEEEESGGG
T ss_pred             ecCCCCCcEEEEECCCCCceEEecCC-----------------CCEEEEEECCCCcccccccccCCcccceEEecccccc
Confidence            32222567788999887 44444322                 4456666665553211100                  


Q ss_pred             -------c-ccccccEEEe-CCCCEEEEEeCCCCeEEEEEeCC
Q 018474          188 -------G-FYFANGIALS-KNEDFVVVCESWKFRCRRYWLKG  221 (355)
Q Consensus       188 -------~-~~~pngi~~~-~dg~~l~v~~~~~~~i~~~~~~~  221 (355)
                             + ...-..++++ +|++.+ ++....+.+..+++..
T Consensus       245 ~~~~~~~~~~~~v~~v~~~~~dg~~l-~s~s~d~~i~vwd~~~  286 (393)
T 4gq1_A          245 VNTCHSSGIASSLANVRWIGSDGSGI-LAMCKSGAWLRWNLFA  286 (393)
T ss_dssp             C------CCSSSCSEEEEETTTTCEE-EEECTTSEEEEEEC--
T ss_pred             eeeeecccccccceeeeeecCCCCEE-EEEeCCCCEEEEECcc
Confidence                   0 0112345555 788855 4555677888888743

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=96.33  E-value=0.58  Score=42.30  Aligned_cols=183  Identities=10%  Similarity=-0.028  Sum_probs=91.1

Q ss_pred             CCeEEEEec---CCEEEEEEc-CCCeeEEe-eccCCCcccCeEEC---CCCCEEEEeCCCcEEEE-c-CCC--eEEEcCC
Q 018474           63 KGALYTATR---DGWVKYFIL-HNETLVNW-KHIDSQSLLGLTTT---KDGGVILCDNEKGLLKV-T-EEG--VEAIVPD  130 (355)
Q Consensus        63 ~g~l~~~~~---~g~i~~~~~-~~g~~~~~-~~~~~~p~~gl~~d---~~g~L~v~~~~~gl~~~-~-~~g--~~~~~~~  130 (355)
                      ++.+..++.   ++.|..++. .+|+...- ........ .+++.   .++.++++...++.+++ + ++|  ++.+...
T Consensus       144 ~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~-~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~  222 (356)
T 2w18_A          144 KRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEET-ILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHID  222 (356)
T ss_dssp             TTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSC-EEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             CCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCcee-eEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCC
Confidence            344444432   666666666 34543321 11111122 33443   37788888767776666 4 467  5666432


Q ss_pred             ---cCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee----ccccccccEEEeCCCCE
Q 018474          131 ---ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH----EGFYFANGIALSKNEDF  203 (355)
Q Consensus       131 ---~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~----~~~~~pngi~~~~dg~~  203 (355)
                         ...+..++++|+|.+.++.+..     .....+..+...+.+..+|+++++.....    +......-+..+.++. 
T Consensus       223 ~~~v~~v~~vafSpdG~~lvs~s~~-----~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~-  296 (356)
T 2w18_A          223 DSYQASVCHKAYSEMGLLFIVLSHP-----CAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDH-  296 (356)
T ss_dssp             C---CCCEEEEEEETTEEEEEEC-----------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETT-
T ss_pred             CcceeeeEEEEECCCCCEEEEeccC-----CCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCC-
Confidence               1456677899999877654321     01122334444567777899888653221    0000001122222233 


Q ss_pred             EEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcC-ceEECCCCCEEEEeec
Q 018474          204 VVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPD-NINLAPDGSFWIGLIK  255 (355)
Q Consensus       204 l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~-~i~~d~~G~lwv~~~~  255 (355)
                      +.++.+..+.|..+|+...+.  ...+. ....... .+++.++|++.++...
T Consensus       297 ~lASgS~DgTIkIWDl~tGk~--l~tL~-gH~~~vvs~vafSPDG~~LaSGS~  346 (356)
T 2w18_A          297 CAAAILTSGTIAIWDLLLGQC--TALLP-PVSDQHWSFVKWSGTDSHLLAGQK  346 (356)
T ss_dssp             EEEEEETTSCEEEEETTTCSE--EEEEC-CC--CCCCEEEECSSSSEEEEECT
T ss_pred             EEEEEcCCCcEEEEECCCCcE--EEEec-CCCCCeEEEEEECCCCCEEEEEEC
Confidence            455555667888888854321  22222 1111123 3678999998776654

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=96.25  E-value=0.52  Score=42.58  Aligned_cols=137  Identities=13%  Similarity=0.007  Sum_probs=71.7

Q ss_pred             CeEEEEecCCEEEEEEcCCCeeEEeeccCC----CcccCeEECCCCCEEEEeCC------------CcEEE-EcC-CC--
Q 018474           64 GALYTATRDGWVKYFILHNETLVNWKHIDS----QSLLGLTTTKDGGVILCDNE------------KGLLK-VTE-EG--  123 (355)
Q Consensus        64 g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~----~p~~gl~~d~~g~L~v~~~~------------~gl~~-~~~-~g--  123 (355)
                      ..|..++.|+.|..+|.++|+.........    ... .+++.++|.+.++...            .+.++ .+. +|  
T Consensus       194 ~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~-~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~  272 (356)
T 2w18_A          194 EALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVC-HKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLS  272 (356)
T ss_dssp             TEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCE-EEEEEETTEEEEEEC------------CCEEEEEEETTTTEE
T ss_pred             ceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeE-EEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEE
Confidence            445556889999999999997654433221    223 4468888887654221            12222 232 33  


Q ss_pred             eEEEcC--C-cCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccc-cccc-cEEEe
Q 018474          124 VEAIVP--D-ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGF-YFAN-GIALS  198 (355)
Q Consensus       124 ~~~~~~--~-~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~-~~pn-gi~~~  198 (355)
                      +..+.-  + .....-+..+.+|.+.++                 +...+.+..||..+++......+. .... .++++
T Consensus       273 l~v~~~~~p~Gh~~~~lsg~~sg~~lAS-----------------gS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafS  335 (356)
T 2w18_A          273 VGVMLYCLPPGQAGRFLEGDVKDHCAAA-----------------ILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWS  335 (356)
T ss_dssp             EEEEEECCCTTCCCCEEEEEEETTEEEE-----------------EETTSCEEEEETTTCSEEEEECCC--CCCCEEEEC
T ss_pred             EEEEEeeccCCCcceeEccccCCCEEEE-----------------EcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEEC
Confidence            222110  0 000000111111222222                 223567888999888754433322 2233 47999


Q ss_pred             CCCCEEEEEeCCCCeEEEEEe
Q 018474          199 KNEDFVVVCESWKFRCRRYWL  219 (355)
Q Consensus       199 ~dg~~l~v~~~~~~~i~~~~~  219 (355)
                      |||+.| ++.+..+.|..+++
T Consensus       336 PDG~~L-aSGS~D~TIklWd~  355 (356)
T 2w18_A          336 GTDSHL-LAGQKDGNIFVYHY  355 (356)
T ss_dssp             SSSSEE-EEECTTSCEEEEEE
T ss_pred             CCCCEE-EEEECCCcEEEecC
Confidence            999954 55566777877764

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=96.08  E-value=0.81  Score=41.63  Aligned_cols=68  Identities=10%  Similarity=0.154  Sum_probs=40.7

Q ss_pred             CCCceEEEee--------CCCeEEEEecCCEEEEEEcCCCee-EEeeccCCCcccCeEECCCCC-EEEEeCCCcEE-EEc
Q 018474           52 NHPEDVSVVV--------SKGALYTATRDGWVKYFILHNETL-VNWKHIDSQSLLGLTTTKDGG-VILCDNEKGLL-KVT  120 (355)
Q Consensus        52 ~~p~~i~~d~--------~~g~l~~~~~~g~i~~~~~~~g~~-~~~~~~~~~p~~gl~~d~~g~-L~v~~~~~gl~-~~~  120 (355)
                      ..-.++++.|        ++..|..++.|+.|..+|..++.. .........+. ++++.+++. ++++...++.+ .++
T Consensus       137 ~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~-~v~~~p~~~~~l~~~~~d~~v~~wd  215 (393)
T 4gq1_A          137 NFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGI-SVQFRPSNPNQLIVGERNGNIRIFD  215 (393)
T ss_dssp             SCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEE-EEEEETTEEEEEEEEETTSEEEEEE
T ss_pred             CceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcE-EEEECCCCCceEEecCCCCEEEEEE
Confidence            3446677764        344566678899999999866543 33323334566 888988763 44433344544 445

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=95.72  E-value=0.97  Score=39.68  Aligned_cols=209  Identities=12%  Similarity=-0.000  Sum_probs=105.4

Q ss_pred             CEEEEEEcCCCeeEEeeccC--CCcccCeEECCCCCEEEEeCC--------C----cEEEEcC-CC-eEEEcCCc-CCcc
Q 018474           73 GWVKYFILHNETLVNWKHID--SQSLLGLTTTKDGGVILCDNE--------K----GLLKVTE-EG-VEAIVPDA-SFTN  135 (355)
Q Consensus        73 g~i~~~~~~~g~~~~~~~~~--~~p~~gl~~d~~g~L~v~~~~--------~----gl~~~~~-~g-~~~~~~~~-~~~~  135 (355)
                      ..+.++|+.++++.......  .+.. .-+.-.++.||+....        .    .+++++. ++ .+.+.... ..-.
T Consensus        13 ~~~~~yd~~~~~W~~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~   91 (315)
T 4asc_A           13 EGAVAYDPAANECYCASLSSQVPKNH-VSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCL   91 (315)
T ss_dssp             TEEEEEETTTTEEEEEECCCCSCSSE-EEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEES
T ss_pred             CceEEECCCCCeEecCCCCCCCCccc-eEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhc
Confidence            57999999999987522111  1211 1122347788885431        1    1677784 55 55443322 1111


Q ss_pred             cEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecccc-ccccEEEeCCCCEEEEEeCC----
Q 018474          136 DVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFY-FANGIALSKNEDFVVVCESW----  210 (355)
Q Consensus       136 ~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~-~pngi~~~~dg~~l~v~~~~----  210 (355)
                      .-++.-++.||+........         .......+++||+.+++++.+..... .....+..-+++ +|+..-.    
T Consensus        92 ~~~~~~~~~lyv~GG~~~~~---------~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~-iyv~GG~~~~~  161 (315)
T 4asc_A           92 FGLGEALNSIYVVGGREIKD---------GERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDL-VYVIGGKGSDR  161 (315)
T ss_dssp             CEEEEETTEEEEECCEESST---------TCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTE-EEEECCBCTTS
T ss_pred             eeEEEECCEEEEEeCCcCCC---------CCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCE-EEEEeCCCCCC
Confidence            22222367888864320000         01223469999999999887653211 111122223444 7776532    


Q ss_pred             --CCeEEEEEeCCCCCcceeEecccCCCCcC---ceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhccc
Q 018474          211 --KFRCRRYWLKGDRAGILDAFIENLPGGPD---NINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLL  285 (355)
Q Consensus       211 --~~~i~~~~~~~~~~~~~~~~~~~~~g~p~---~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (355)
                        .+.+++|++...   +.+... .+|. |.   ..+. -++++||.......                           
T Consensus       162 ~~~~~~~~yd~~~~---~W~~~~-~~p~-~r~~~~~~~-~~~~iyv~GG~~~~---------------------------  208 (315)
T 4asc_A          162 KCLNKMCVYDPKKF---EWKELA-PMQT-ARSLFGATV-HDGRIIVAAGVTDT---------------------------  208 (315)
T ss_dssp             CBCCCEEEEETTTT---EEEECC-CCSS-CCBSCEEEE-ETTEEEEEEEECSS---------------------------
T ss_pred             cccceEEEEeCCCC---eEEECC-CCCC-chhceEEEE-ECCEEEEEeccCCC---------------------------
Confidence              246889987542   233222 2221 21   1222 25678876543211                           


Q ss_pred             CCCCCCceEEEEEeCCCCeEEEEEEC-CCCCcccceeEEEEeCCEEEEe
Q 018474          286 PMGSDAGARVVKVDGNDGKIIRDFND-PDATYISFVTSAAEFDGNLYLA  333 (355)
Q Consensus       286 ~~~~~~~~~v~~~~~~~g~~~~~~~~-~~g~~~~~~~~~~~~~g~L~v~  333 (355)
                          .....+.+||+++.+.. .... +..+   ....++..+++||+-
T Consensus       209 ----~~~~~~~~yd~~~~~W~-~~~~~p~~r---~~~~~~~~~~~l~v~  249 (315)
T 4asc_A          209 ----GLTSSAEVYSITDNKWA-PFEAFPQER---SSLSLVSLVGTLYAI  249 (315)
T ss_dssp             ----SEEEEEEEEETTTTEEE-EECCCSSCC---BSCEEEEETTEEEEE
T ss_pred             ----CccceEEEEECCCCeEE-ECCCCCCcc---cceeEEEECCEEEEE
Confidence                11246899999455444 3432 3322   233455668888883

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=95.56  E-value=2  Score=42.18  Aligned_cols=121  Identities=12%  Similarity=0.050  Sum_probs=73.3

Q ss_pred             CCceEEEeeCCCeEEEE-ecC-----------CEEEEEEcCCCeeEEeeccC----CCcccCeEECCCCCEEEEeCC--C
Q 018474           53 HPEDVSVVVSKGALYTA-TRD-----------GWVKYFILHNETLVNWKHID----SQSLLGLTTTKDGGVILCDNE--K  114 (355)
Q Consensus        53 ~p~~i~~d~~~g~l~~~-~~~-----------g~i~~~~~~~g~~~~~~~~~----~~p~~gl~~d~~g~L~v~~~~--~  114 (355)
                      .+.+.++.+.++.+|+. ..+           ..+.++|+.+++++......    .... +.++..+|+||+....  .
T Consensus       187 ~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~-~~~~~~~g~lyv~GG~~~~  265 (656)
T 1k3i_A          187 VPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCP-GISMDGNGQIVVTGGNDAK  265 (656)
T ss_dssp             CCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSC-EEEECTTSCEEEECSSSTT
T ss_pred             CceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccc-cccCCCCCCEEEeCCCCCC
Confidence            45566776437788864 221           15788999888876553221    1122 3566678999997642  2


Q ss_pred             cEEEEcC-CC-eEEEcCCc--CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEe
Q 018474          115 GLLKVTE-EG-VEAIVPDA--SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL  185 (355)
Q Consensus       115 gl~~~~~-~g-~~~~~~~~--~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~  185 (355)
                      .+.++|+ ++ .+.+....  ..-...++-++|+||+.....  .         .......+.+|||.+++++.+
T Consensus       266 ~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~--~---------~~~~~~~~e~yd~~t~~W~~~  329 (656)
T 1k3i_A          266 KTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSW--S---------GGVFEKNGEVYSPSSKTWTSL  329 (656)
T ss_dssp             CEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCC--C---------SSSCCCCEEEEETTTTEEEEE
T ss_pred             ceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcc--c---------CCcccccceEeCCCCCcceeC
Confidence            4888884 55 44443321  333445666789999875420  0         001134689999999998875

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=95.35  E-value=2  Score=42.12  Aligned_cols=119  Identities=9%  Similarity=0.057  Sum_probs=64.1

Q ss_pred             eEEEeeCCCeEEEEe--cCCEEEEEEcCCCeeEEeeccC-CC-cccCeEECCCCCEEEEeCC-------CcEEEEcC-CC
Q 018474           56 DVSVVVSKGALYTAT--RDGWVKYFILHNETLVNWKHID-SQ-SLLGLTTTKDGGVILCDNE-------KGLLKVTE-EG  123 (355)
Q Consensus        56 ~i~~d~~~g~l~~~~--~~g~i~~~~~~~g~~~~~~~~~-~~-p~~gl~~d~~g~L~v~~~~-------~gl~~~~~-~g  123 (355)
                      +.++. .++.+|+..  .+..+.++|+.++++....... .+ -+ +.+.-++|+|||....       ..+.++|+ ++
T Consensus       247 ~~~~~-~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~-s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~  324 (656)
T 1k3i_A          247 GISMD-GNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQ-SSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK  324 (656)
T ss_dssp             EEEEC-TTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSC-EEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             cccCC-CCCCEEEeCCCCCCceEEecCcCCceeECCCCCcccccc-ceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence            35555 567777743  2457999999999888764322 22 12 3455568999997541       23778885 55


Q ss_pred             -eEEEcCC----c-CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEE
Q 018474          124 -VEAIVPD----A-SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV  184 (355)
Q Consensus       124 -~~~~~~~----~-~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~  184 (355)
                       .+.+...    . ..-...++..++.+|+.....        ..++.......+.+||++++++..
T Consensus       325 ~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~--------g~~~~~~~~~~v~~yd~~~~~w~~  383 (656)
T 1k3i_A          325 TWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKK--------GSVFQAGPSTAMNWYYTSGSGDVK  383 (656)
T ss_dssp             EEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGG--------GCEEECCSSSEEEEEECSTTCEEE
T ss_pred             cceeCCCccccccccccccceeecCCceEEEECCC--------CcEEEecCccceeeeecCCcceee
Confidence             5554221    1 000111222456666543210        001111224478999998877543

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=95.31  E-value=1.3  Score=38.64  Aligned_cols=218  Identities=11%  Similarity=0.103  Sum_probs=112.4

Q ss_pred             CEEEEEEcCCCeeEEeeccCC-Cc-ccCeEECCCCCEEEEeCC----------CcEEEEcC-CC-eEEEcCCc-CCcccE
Q 018474           73 GWVKYFILHNETLVNWKHIDS-QS-LLGLTTTKDGGVILCDNE----------KGLLKVTE-EG-VEAIVPDA-SFTNDV  137 (355)
Q Consensus        73 g~i~~~~~~~g~~~~~~~~~~-~p-~~gl~~d~~g~L~v~~~~----------~gl~~~~~-~g-~~~~~~~~-~~~~~l  137 (355)
                      ..+.++|+.+++++....... +. + +++. -++.||+....          ..+++++. +. .+.+.... ......
T Consensus        39 ~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~  116 (308)
T 1zgk_A           39 SYLEAYNPSNGTWLRLADLQVPRSGL-AGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIG  116 (308)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSC-EEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCE
T ss_pred             ceEEEEcCCCCeEeECCCCCcccccc-eEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccE
Confidence            468999999999887643221 11 2 2333 36788886422          24788884 55 55544322 112222


Q ss_pred             EEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecccc--ccccEEEeCCCCEEEEEeCC-----
Q 018474          138 IAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFY--FANGIALSKNEDFVVVCESW-----  210 (355)
Q Consensus       138 ~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~--~pngi~~~~dg~~l~v~~~~-----  210 (355)
                      ++.-+|.||+......            ......+++||+.+++++.+.....  .....+.. ++ .+|+..-.     
T Consensus       117 ~~~~~~~iyv~GG~~~------------~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~  182 (308)
T 1zgk_A          117 VGVIDGHIYAVGGSHG------------CIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NR-LLYAVGGFDGTNR  182 (308)
T ss_dssp             EEEETTEEEEECCEET------------TEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TT-EEEEECCBCSSCB
T ss_pred             EEEECCEEEEEcCCCC------------CcccccEEEECCCCCeEeECCCCCccccceEEEEE-CC-EEEEEeCCCCCCc
Confidence            2233778988643200            0113468999999999887643211  11123332 44 47776421     


Q ss_pred             CCeEEEEEeCCCCCcceeEecccCCCCcC---ceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCC
Q 018474          211 KFRCRRYWLKGDRAGILDAFIENLPGGPD---NINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPM  287 (355)
Q Consensus       211 ~~~i~~~~~~~~~~~~~~~~~~~~~g~p~---~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (355)
                      .+.+++|+++..   +.+... .++. |.   .++.. +++||+-......                             
T Consensus       183 ~~~~~~yd~~~~---~W~~~~-~~p~-~r~~~~~~~~-~~~iyv~GG~~~~-----------------------------  227 (308)
T 1zgk_A          183 LNSAECYYPERN---EWRMIT-AMNT-IRSGAGVCVL-HNCIYAAGGYDGQ-----------------------------  227 (308)
T ss_dssp             CCCEEEEETTTT---EEEECC-CCSS-CCBSCEEEEE-TTEEEEECCBCSS-----------------------------
T ss_pred             CceEEEEeCCCC---eEeeCC-CCCC-ccccceEEEE-CCEEEEEeCCCCC-----------------------------
Confidence            356889997542   222222 2221 11   12232 4678876533210                             


Q ss_pred             CCCCceEEEEEeCCCCeEEEEEEC-CCCCcccceeEEEEeCCEEEEee-c----CCCeEEEeeCCC
Q 018474          288 GSDAGARVVKVDGNDGKIIRDFND-PDATYISFVTSAAEFDGNLYLAS-L----QSNFIGILPLDG  347 (355)
Q Consensus       288 ~~~~~~~v~~~~~~~g~~~~~~~~-~~g~~~~~~~~~~~~~g~L~v~~-~----~~~~i~~~~~~~  347 (355)
                        .....+.+||+++.+. ..+.. +..+   ....++..+++||+-. .    ..+.+.+|++.+
T Consensus       228 --~~~~~v~~yd~~~~~W-~~~~~~p~~r---~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~  287 (308)
T 1zgk_A          228 --DQLNSVERYDVETETW-TFVAPMKHRR---SALGITVHQGRIYVLGGYDGHTFLDSVECYDPDT  287 (308)
T ss_dssp             --SBCCCEEEEETTTTEE-EECCCCSSCC---BSCEEEEETTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred             --CccceEEEEeCCCCcE-EECCCCCCCc---cceEEEEECCEEEEEcCcCCCcccceEEEEcCCC
Confidence              1113589999944444 33332 2222   2234555688888843 2    234566776653

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=95.28  E-value=2.9  Score=42.21  Aligned_cols=97  Identities=7%  Similarity=0.047  Sum_probs=60.6

Q ss_pred             CCCceEEEeeC-CCeEEEEecCCEEEEEEcCCCeeEEeeccC-------CCcccCeEECCC--CCEEEEeCC------Cc
Q 018474           52 NHPEDVSVVVS-KGALYTATRDGWVKYFILHNETLVNWKHID-------SQSLLGLTTTKD--GGVILCDNE------KG  115 (355)
Q Consensus        52 ~~p~~i~~d~~-~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~-------~~p~~gl~~d~~--g~L~v~~~~------~g  115 (355)
                      ..-.+|+++|. .+.+|+++..+.|++-+-....++.+....       .... .|++|+.  +.+|++...      .+
T Consensus        15 g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~-~ia~dp~~~~~i~~~~g~~~~~~~~~   93 (789)
T 1sqj_A           15 GYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTE-SIALDPNNPDRLYLAQGRYVGDEWAA   93 (789)
T ss_dssp             SCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEE-EEEEETTEEEEEEEEECSCTTSSCCE
T ss_pred             CcEEEEEECCCCCCEEEEEecCCCEEEecCCCCCeeECccCCCcccccCCcee-EEEECCCCCCEEEEEeCccCCCcccE
Confidence            45677888854 478999998888998876455677654321       2355 7888864  579998743      35


Q ss_pred             EEEEcCCC--eEEEcCCc---------CCcccEEEccC--CcEEEEe
Q 018474          116 LLKVTEEG--VEAIVPDA---------SFTNDVIAASD--GTLYFTV  149 (355)
Q Consensus       116 l~~~~~~g--~~~~~~~~---------~~~~~l~~d~d--G~ly~~d  149 (355)
                      |++=...|  -+.+....         ..+..+++++.  +.+|+..
T Consensus        94 v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~  140 (789)
T 1sqj_A           94 FYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGT  140 (789)
T ss_dssp             EEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEEC
T ss_pred             EEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEe
Confidence            55554445  44433211         12356888873  4677754

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=95.26  E-value=1.4  Score=38.42  Aligned_cols=221  Identities=10%  Similarity=0.044  Sum_probs=114.5

Q ss_pred             CCEEEEEEcCCCeeEEeeccCC-Cc-ccCeEECCCCCEEEEeC-----CCcEEEEcC-CC-eEEEcCCc-CCcccEEEcc
Q 018474           72 DGWVKYFILHNETLVNWKHIDS-QS-LLGLTTTKDGGVILCDN-----EKGLLKVTE-EG-VEAIVPDA-SFTNDVIAAS  141 (355)
Q Consensus        72 ~g~i~~~~~~~g~~~~~~~~~~-~p-~~gl~~d~~g~L~v~~~-----~~gl~~~~~-~g-~~~~~~~~-~~~~~l~~d~  141 (355)
                      ...++++|+.++++........ +. + +++. -++.||+...     ...+++++. ++ .+.+.... ..-...++.-
T Consensus        23 ~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~  100 (306)
T 3ii7_A           23 PQSCRYFNPKDYSWTDIRCPFEKRRDA-ACVF-WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA  100 (306)
T ss_dssp             TTSEEEEETTTTEEEECCCCSCCCBSC-EEEE-ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE
T ss_pred             CceEEEecCCCCCEecCCCCCccccee-EEEE-ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE
Confidence            3568999999999887643321 11 2 2222 3678888643     135788884 55 45444322 1122222233


Q ss_pred             CCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecccc--ccccEEEeCCCCEEEEEeCC---------
Q 018474          142 DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFY--FANGIALSKNEDFVVVCESW---------  210 (355)
Q Consensus       142 dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~--~pngi~~~~dg~~l~v~~~~---------  210 (355)
                      ++.||+......           .......+++||+.+++++.+.....  .....+. -++ .+|+..-.         
T Consensus       101 ~~~iyv~GG~~~-----------~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~-~iyv~GG~~~~~~~~~~  167 (306)
T 3ii7_A          101 EGKIYTSGGSEV-----------GNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANG-LIYVCGGSLGNNVSGRV  167 (306)
T ss_dssp             TTEEEEECCBBT-----------TBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETT-EEEEECCEESCTTTCEE
T ss_pred             CCEEEEECCCCC-----------CCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECC-EEEEECCCCCCCCcccc
Confidence            778988643200           01123469999999999887643211  1112233 344 47776521         


Q ss_pred             CCeEEEEEeCCCCCcceeEecccCCC--CcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCC
Q 018474          211 KFRCRRYWLKGDRAGILDAFIENLPG--GPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMG  288 (355)
Q Consensus       211 ~~~i~~~~~~~~~~~~~~~~~~~~~g--~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (355)
                      .+.+++|+++..   +.+... .++.  ..-.++.- +++||+.-.....                              
T Consensus       168 ~~~~~~yd~~~~---~W~~~~-~~p~~r~~~~~~~~-~~~i~v~GG~~~~------------------------------  212 (306)
T 3ii7_A          168 LNSCEVYDPATE---TWTELC-PMIEARKNHGLVFV-KDKIFAVGGQNGL------------------------------  212 (306)
T ss_dssp             CCCEEEEETTTT---EEEEEC-CCSSCCBSCEEEEE-TTEEEEECCEETT------------------------------
T ss_pred             cceEEEeCCCCC---eEEECC-CccchhhcceEEEE-CCEEEEEeCCCCC------------------------------
Confidence            456889987543   333332 2221  11112222 5678876433110                              


Q ss_pred             CCCceEEEEEeCCCCeEEEEEEC-CCCCcccceeEEEEeCCEEEEe-ec----CCCeEEEeeCCC
Q 018474          289 SDAGARVVKVDGNDGKIIRDFND-PDATYISFVTSAAEFDGNLYLA-SL----QSNFIGILPLDG  347 (355)
Q Consensus       289 ~~~~~~v~~~~~~~g~~~~~~~~-~~g~~~~~~~~~~~~~g~L~v~-~~----~~~~i~~~~~~~  347 (355)
                       .....+.+||+++.+. +.+.. +..+   ....++..+++||+. ..    ..+.+.+|++.+
T Consensus       213 -~~~~~~~~yd~~~~~W-~~~~~~p~~r---~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~  272 (306)
T 3ii7_A          213 -GGLDNVEYYDIKLNEW-KMVSPMPWKG---VTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTET  272 (306)
T ss_dssp             -EEBCCEEEEETTTTEE-EECCCCSCCB---SCCEEEEETTEEEEEECBCSSSBCCEEEEEETTT
T ss_pred             -CCCceEEEeeCCCCcE-EECCCCCCCc---cceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCC
Confidence             0013589999944544 33322 2222   223445558888884 32    235667776654

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=95.14  E-value=1.5  Score=38.39  Aligned_cols=132  Identities=14%  Similarity=0.127  Sum_probs=71.1

Q ss_pred             EEEEEcCCCeeEEeeccCC-C-cccCeEECCCCCEEEEeCC--------CcEEEEcC-CC-eEEEcCCc-CCcccEEEcc
Q 018474           75 VKYFILHNETLVNWKHIDS-Q-SLLGLTTTKDGGVILCDNE--------KGLLKVTE-EG-VEAIVPDA-SFTNDVIAAS  141 (355)
Q Consensus        75 i~~~~~~~g~~~~~~~~~~-~-p~~gl~~d~~g~L~v~~~~--------~gl~~~~~-~g-~~~~~~~~-~~~~~l~~d~  141 (355)
                      ++++|+.+++++....... + -+ +++. -++.||+....        ..+.++|. +. .+.+.... ..-..-++.-
T Consensus        80 ~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~  157 (318)
T 2woz_A           80 FFQLDNVSSEWVGLPPLPSARCLF-GLGE-VDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISH  157 (318)
T ss_dssp             EEEEETTTTEEEECSCBSSCBCSC-EEEE-ETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEE
T ss_pred             EEEEeCCCCcEEECCCCCcccccc-ceEE-ECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEE
Confidence            7899999999887643221 1 12 2333 36788885421        13778884 55 55544322 1112222335


Q ss_pred             CCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccc--cccccEEEeCCCCEEEEEeCC-----CCeE
Q 018474          142 DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGF--YFANGIALSKNEDFVVVCESW-----KFRC  214 (355)
Q Consensus       142 dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~--~~pngi~~~~dg~~l~v~~~~-----~~~i  214 (355)
                      +|.||+......           .......+++||+.+++++.+....  ....+++. -++ .+|+..-.     .+.+
T Consensus       158 ~~~iyv~GG~~~-----------~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~-~iyv~GG~~~~~~~~~~  224 (318)
T 2woz_A          158 NGMIYCLGGKTD-----------DKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKG-KIVIAGGVTEDGLSASV  224 (318)
T ss_dssp             TTEEEEECCEES-----------SSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETT-EEEEEEEEETTEEEEEE
T ss_pred             CCEEEEEcCCCC-----------CCCccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECC-EEEEEcCcCCCCccceE
Confidence            788988643100           0112346999999999998764321  11122333 344 46666411     2457


Q ss_pred             EEEEeCC
Q 018474          215 RRYWLKG  221 (355)
Q Consensus       215 ~~~~~~~  221 (355)
                      ++|+++.
T Consensus       225 ~~yd~~~  231 (318)
T 2woz_A          225 EAFDLKT  231 (318)
T ss_dssp             EEEETTT
T ss_pred             EEEECCC
Confidence            7888754

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=94.97  E-value=0.031  Score=51.12  Aligned_cols=50  Identities=8%  Similarity=-0.116  Sum_probs=27.4

Q ss_pred             CCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeC
Q 018474          169 YGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLK  220 (355)
Q Consensus       169 ~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~  220 (355)
                      .+.++.+|.++|+....... .......+..+++ +|+..+..+.|+.++.+
T Consensus        18 dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~-~~v~~s~dg~l~a~d~~   67 (369)
T 2hz6_A           18 DGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEP-AFLPDPNDGSLYTLGSK   67 (369)
T ss_dssp             TSEEEEEETTTCCEEEEEEC-CCSCCCC-----C-CEEECTTTCCEEEC---
T ss_pred             CCEEEEEECCCCCEEEEecC-CCceecceEcCCC-EEEEeCCCCEEEEEECC
Confidence            45799999988876544332 2222233445665 67776677889999874

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=94.76  E-value=1.2  Score=44.60  Aligned_cols=103  Identities=12%  Similarity=-0.018  Sum_probs=56.4

Q ss_pred             CcccEEEc-cCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCC-eEEEeeccc-cccccEEEeCCCCEEEEEe
Q 018474          133 FTNDVIAA-SDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLK-ETTVLHEGF-YFANGIALSKNEDFVVVCE  208 (355)
Q Consensus       133 ~~~~l~~d-~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~-~~~~~~~~~-~~pngi~~~~dg~~l~v~~  208 (355)
                      ...+..++ |||+ |.++...             .+.....|+.+|.+++ +..  ...+ ....+++++|||+.++++.
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~-------------~G~~~~~l~v~dl~~g~~~l--~~~~~~~~~~~~WspDg~~l~y~~  239 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDM-------------SGNEVYTIEFKRISDPSQTI--ADKVSGTNGEIVWGPDHTSLFYVT  239 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEES-------------SSSSCEEEEEEETTCTTCCC--CCCEEEECSCCEECSSTTEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeC-------------CCCceEEEEEEECCCCCEeC--CccccCceeeEEEecCCCEEEEEE
Confidence            35567899 9995 5444322             0111235899998887 521  1111 1135789999998787775


Q ss_pred             CCC----CeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEE
Q 018474          209 SWK----FRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFW  250 (355)
Q Consensus       209 ~~~----~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lw  250 (355)
                      ...    ..|+++++.+.......++.+....+-.+...++||+..
T Consensus       240 ~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l  285 (751)
T 2xe4_A          240 KDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTL  285 (751)
T ss_dssp             ECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEE
T ss_pred             ECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEE
Confidence            432    368888875432211222221111222345678899743

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=94.65  E-value=3.6  Score=40.82  Aligned_cols=144  Identities=8%  Similarity=0.063  Sum_probs=83.6

Q ss_pred             CCeEEEE-ec----CCEEEEEEcCCCeeEEee-c------cCCC-cccCeEECC-CCCEEEEeCC-------CcEEEEcC
Q 018474           63 KGALYTA-TR----DGWVKYFILHNETLVNWK-H------IDSQ-SLLGLTTTK-DGGVILCDNE-------KGLLKVTE  121 (355)
Q Consensus        63 ~g~l~~~-~~----~g~i~~~~~~~g~~~~~~-~------~~~~-p~~gl~~d~-~g~L~v~~~~-------~gl~~~~~  121 (355)
                      ++.+|+- ..    ...++++|+.++++.... .      ...+ -+ +++.-. +|+|||....       ..+++++.
T Consensus       397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~h-s~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCH-TFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSC-EEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccce-EEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            5567763 21    245899999999988876 3      1111 12 333333 7889986421       24788884


Q ss_pred             -CC-eEEEcCCc--CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecc--cc----c
Q 018474          122 -EG-VEAIVPDA--SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG--FY----F  191 (355)
Q Consensus       122 -~g-~~~~~~~~--~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~--~~----~  191 (355)
                       +. .+.+....  ..-...++-.+|.||+.....               ..+.+++||+.+++++.+...  ..    .
T Consensus       476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~---------------~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~  540 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVT---------------EGPAMLLYNVTEEIFKDVTPKDEFFQNSLV  540 (695)
T ss_dssp             TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBC---------------SSCSEEEEETTTTEEEECCCSSGGGGSCCB
T ss_pred             CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCC---------------CCCCEEEEECCCCceEEccCCCCCCCcccc
Confidence             55 55443322  222334443588899864320               011699999999999877542  11    1


Q ss_pred             cccEEEeCCCCEEEEEeCC-------CCeEEEEEeCCC
Q 018474          192 ANGIALSKNEDFVVVCESW-------KFRCRRYWLKGD  222 (355)
Q Consensus       192 pngi~~~~dg~~l~v~~~~-------~~~i~~~~~~~~  222 (355)
                      ...+++..+...+|+..-.       .+.+++|+++..
T Consensus       541 ~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~  578 (695)
T 2zwa_A          541 SAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAE  578 (695)
T ss_dssp             SCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTT
T ss_pred             eeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCC
Confidence            1225556553458877522       356999998654

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=94.46  E-value=2.2  Score=36.96  Aligned_cols=218  Identities=10%  Similarity=0.032  Sum_probs=112.4

Q ss_pred             CEEEEEEcCCCeeEEeeccCC-C-cccCeEECCCCCEEEEeCC------CcEEEEcC-CC-eEEEcCCc-CCcccEEEcc
Q 018474           73 GWVKYFILHNETLVNWKHIDS-Q-SLLGLTTTKDGGVILCDNE------KGLLKVTE-EG-VEAIVPDA-SFTNDVIAAS  141 (355)
Q Consensus        73 g~i~~~~~~~g~~~~~~~~~~-~-p~~gl~~d~~g~L~v~~~~------~gl~~~~~-~g-~~~~~~~~-~~~~~l~~d~  141 (355)
                      ..+.++|+.++++........ + -+ +++. -++.||+....      ..+++++. +. .+.+.... ..-..-++.-
T Consensus        30 ~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~  107 (302)
T 2xn4_A           30 RSVECYDFKEERWHQVAELPSRRCRA-GMVY-MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL  107 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSC-EEEE-ETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE
T ss_pred             CcEEEEcCcCCcEeEcccCCcccccc-eEEE-ECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE
Confidence            458899998888877643221 1 12 2333 36788886421      24788884 55 55554322 1112222223


Q ss_pred             CCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecccc--ccccEEEeCCCCEEEEEeCC-------CC
Q 018474          142 DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFY--FANGIALSKNEDFVVVCESW-------KF  212 (355)
Q Consensus       142 dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~--~pngi~~~~dg~~l~v~~~~-------~~  212 (355)
                      ++.||+......            ......+++||+.+++++.+.....  .....+. -++ .+|+..-.       .+
T Consensus       108 ~~~iyv~GG~~~------------~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~-~iyv~GG~~~~~~~~~~  173 (302)
T 2xn4_A          108 NGLLYAVGGFDG------------STGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGG-LLYAVGGYDVASRQCLS  173 (302)
T ss_dssp             TTEEEEEEEECS------------SCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETT-EEEEECCEETTTTEECC
T ss_pred             CCEEEEEcCCCC------------CccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECC-EEEEEeCCCCCCCcccc
Confidence            678887542100            0112468999999999987643211  1112233 244 47776421       34


Q ss_pred             eEEEEEeCCCCCcceeEecccCCCCcC---ceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCC
Q 018474          213 RCRRYWLKGDRAGILDAFIENLPGGPD---NINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGS  289 (355)
Q Consensus       213 ~i~~~~~~~~~~~~~~~~~~~~~g~p~---~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (355)
                      .+++|+++..   +.+... .++. +.   .++. -+++||+.......                               
T Consensus       174 ~~~~yd~~~~---~W~~~~-~~p~-~r~~~~~~~-~~~~iyv~GG~~~~-------------------------------  216 (302)
T 2xn4_A          174 TVECYNATTN---EWTYIA-EMST-RRSGAGVGV-LNNLLYAVGGHDGP-------------------------------  216 (302)
T ss_dssp             CEEEEETTTT---EEEEEC-CCSS-CCBSCEEEE-ETTEEEEECCBSSS-------------------------------
T ss_pred             EEEEEeCCCC---cEEECC-CCcc-ccccccEEE-ECCEEEEECCCCCC-------------------------------
Confidence            6889987542   233222 2221 11   1222 24678876533110                               


Q ss_pred             CCceEEEEEeCCCCeEEEEEEC-CCCCcccceeEEEEeCCEEEEee-cC----CCeEEEeeCCC
Q 018474          290 DAGARVVKVDGNDGKIIRDFND-PDATYISFVTSAAEFDGNLYLAS-LQ----SNFIGILPLDG  347 (355)
Q Consensus       290 ~~~~~v~~~~~~~g~~~~~~~~-~~g~~~~~~~~~~~~~g~L~v~~-~~----~~~i~~~~~~~  347 (355)
                      .....+.+||+++.+. ..+.. +..+   ....++..+++||+.. ..    .+.+.+|++.+
T Consensus       217 ~~~~~~~~yd~~~~~W-~~~~~~~~~r---~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~  276 (302)
T 2xn4_A          217 LVRKSVEVYDPTTNAW-RQVADMNMCR---RNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTT  276 (302)
T ss_dssp             SBCCCEEEEETTTTEE-EEECCCSSCC---BSCEEEEETTEEEEECCBCSSSBCCCEEEEETTT
T ss_pred             cccceEEEEeCCCCCE-eeCCCCCCcc---ccCeEEEECCEEEEECCcCCCcccccEEEEcCCC
Confidence            1113589999944554 44432 3222   2334556688888843 22    24467776553

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=93.65  E-value=3.4  Score=36.10  Aligned_cols=132  Identities=12%  Similarity=0.093  Sum_probs=71.9

Q ss_pred             EEEEEcCCCeeEEeeccCC-C-cccCeEECCCCCEEEEeCC---------CcEEEEcC-CC-eEEEcCCc-CCcccEEEc
Q 018474           75 VKYFILHNETLVNWKHIDS-Q-SLLGLTTTKDGGVILCDNE---------KGLLKVTE-EG-VEAIVPDA-SFTNDVIAA  140 (355)
Q Consensus        75 i~~~~~~~g~~~~~~~~~~-~-p~~gl~~d~~g~L~v~~~~---------~gl~~~~~-~g-~~~~~~~~-~~~~~l~~d  140 (355)
                      ++++|+.+++++....... + -+ +++. -+++||+....         ..+++++. ++ -+.+.... ..-..-++.
T Consensus        69 ~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~  146 (315)
T 4asc_A           69 FLQFDHLDSEWLGMPPLPSPRCLF-GLGE-ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS  146 (315)
T ss_dssp             EEEEETTTTEEEECCCBSSCEESC-EEEE-ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE
T ss_pred             eEEecCCCCeEEECCCCCcchhce-eEEE-ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE
Confidence            7899999999877643221 1 12 2333 36789886431         23788884 55 55544322 222222333


Q ss_pred             cCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecccc--ccccEEEeCCCCEEEEEeCC-----CCe
Q 018474          141 SDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFY--FANGIALSKNEDFVVVCESW-----KFR  213 (355)
Q Consensus       141 ~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~--~pngi~~~~dg~~l~v~~~~-----~~~  213 (355)
                      -++.||+......           .......+++||+.+.+++.+.....  .-...+. -+++ +|+..-.     .+.
T Consensus       147 ~~~~iyv~GG~~~-----------~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~-iyv~GG~~~~~~~~~  213 (315)
T 4asc_A          147 HMDLVYVIGGKGS-----------DRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV-HDGR-IIVAAGVTDTGLTSS  213 (315)
T ss_dssp             ETTEEEEECCBCT-----------TSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTE-EEEEEEECSSSEEEE
T ss_pred             ECCEEEEEeCCCC-----------CCcccceEEEEeCCCCeEEECCCCCCchhceEEEE-ECCE-EEEEeccCCCCccce
Confidence            5678888643200           01223469999999999987653211  1112333 3444 6666421     135


Q ss_pred             EEEEEeCC
Q 018474          214 CRRYWLKG  221 (355)
Q Consensus       214 i~~~~~~~  221 (355)
                      +++|+++.
T Consensus       214 ~~~yd~~~  221 (315)
T 4asc_A          214 AEVYSITD  221 (315)
T ss_dssp             EEEEETTT
T ss_pred             EEEEECCC
Confidence            88888754

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=93.60  E-value=3.2  Score=35.80  Aligned_cols=219  Identities=8%  Similarity=0.013  Sum_probs=112.7

Q ss_pred             CEEEEEEcCCCeeEEeeccCC-Cc-ccCeEECCCCCEEEEeCC------CcEEEEcC-CC----eEEEcCCc-CCcccEE
Q 018474           73 GWVKYFILHNETLVNWKHIDS-QS-LLGLTTTKDGGVILCDNE------KGLLKVTE-EG----VEAIVPDA-SFTNDVI  138 (355)
Q Consensus        73 g~i~~~~~~~g~~~~~~~~~~-~p-~~gl~~d~~g~L~v~~~~------~gl~~~~~-~g----~~~~~~~~-~~~~~l~  138 (355)
                      ..++++|+.++++........ +. + +++. -++.||+....      ..+++++. ++    .+.+.... ..-...+
T Consensus        31 ~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~  108 (301)
T 2vpj_A           31 DVVEKYDPKTQEWSFLPSITRKRRYV-ASVS-LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGA  108 (301)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSC-EEEE-ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEE
T ss_pred             eEEEEEcCCCCeEEeCCCCChhhccc-cEEE-ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeE
Confidence            468999999998887653221 11 2 2222 36788886431      24788883 22    34443322 1122222


Q ss_pred             EccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecccc--ccccEEEeCCCCEEEEEeC-----CC
Q 018474          139 AASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFY--FANGIALSKNEDFVVVCES-----WK  211 (355)
Q Consensus       139 ~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~--~pngi~~~~dg~~l~v~~~-----~~  211 (355)
                      +.-++.||+......            ......+++||+.+++++.+.....  .....+. -+++ +|+..-     ..
T Consensus       109 ~~~~~~lyv~GG~~~------------~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~-iyv~GG~~~~~~~  174 (301)
T 2vpj_A          109 TTLGDMIYVSGGFDG------------SRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV-ASGV-IYCLGGYDGLNIL  174 (301)
T ss_dssp             EEETTEEEEECCBCS------------SCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE-ETTE-EEEECCBCSSCBC
T ss_pred             EEECCEEEEEcccCC------------CcccceEEEEcCCCCeEEECCCCCCCcccceEEE-ECCE-EEEECCCCCCccc
Confidence            223678998643210            0113479999999999887653211  1122233 3554 777642     13


Q ss_pred             CeEEEEEeCCCCCcceeEecccCCCCcC---ceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCC
Q 018474          212 FRCRRYWLKGDRAGILDAFIENLPGGPD---NINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMG  288 (355)
Q Consensus       212 ~~i~~~~~~~~~~~~~~~~~~~~~g~p~---~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (355)
                      +.+++|+++..   +.+... .++. |.   .++. -++++|+.......                              
T Consensus       175 ~~~~~~d~~~~---~W~~~~-~~p~-~r~~~~~~~-~~~~i~v~GG~~~~------------------------------  218 (301)
T 2vpj_A          175 NSVEKYDPHTG---HWTNVT-PMAT-KRSGAGVAL-LNDHIYVVGGFDGT------------------------------  218 (301)
T ss_dssp             CCEEEEETTTT---EEEEEC-CCSS-CCBSCEEEE-ETTEEEEECCBCSS------------------------------
T ss_pred             ceEEEEeCCCC---cEEeCC-CCCc-ccccceEEE-ECCEEEEEeCCCCC------------------------------
Confidence            56889997543   333222 2221 11   1222 24678876543211                              


Q ss_pred             CCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeCCEEEEee-cCC----CeEEEeeCCC
Q 018474          289 SDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLAS-LQS----NFIGILPLDG  347 (355)
Q Consensus       289 ~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~-~~~----~~i~~~~~~~  347 (355)
                       .....+.+||+++.+....-..+..+   ....++..+++||+.. ...    +.+.+|++.+
T Consensus       219 -~~~~~v~~yd~~~~~W~~~~~~p~~r---~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~  278 (301)
T 2vpj_A          219 -AHLSSVEAYNIRTDSWTTVTSMTTPR---CYVGATVLRGRLYAIAGYDGNSLLSSIECYDPII  278 (301)
T ss_dssp             -SBCCCEEEEETTTTEEEEECCCSSCC---BSCEEEEETTEEEEECCBCSSSBEEEEEEEETTT
T ss_pred             -cccceEEEEeCCCCcEEECCCCCCcc---cceeEEEECCEEEEEcCcCCCcccccEEEEcCCC
Confidence             11135899999455544332223332   2234555688888843 322    4566666654

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=93.52  E-value=3.4  Score=35.70  Aligned_cols=143  Identities=13%  Similarity=0.110  Sum_probs=77.6

Q ss_pred             CCeEEEE-ec-----CCEEEEEEcCCCe---eEEeeccC-CC-cccCeEECCCCCEEEEeCC------CcEEEEcC-CC-
Q 018474           63 KGALYTA-TR-----DGWVKYFILHNET---LVNWKHID-SQ-SLLGLTTTKDGGVILCDNE------KGLLKVTE-EG-  123 (355)
Q Consensus        63 ~g~l~~~-~~-----~g~i~~~~~~~g~---~~~~~~~~-~~-p~~gl~~d~~g~L~v~~~~------~gl~~~~~-~g-  123 (355)
                      ++.+|+- ..     ...++++|+.+++   ++...... .+ -+ +++. -++.||+....      ..+.+++. +. 
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~  139 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLA-GATT-LGDMIYVSGGFDGSRRHTSMERYDPNIDQ  139 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSC-EEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccce-eEEE-ECCEEEEEcccCCCcccceEEEEcCCCCe
Confidence            5567763 22     2468999998888   77764322 11 12 2333 36789987431      24788884 55 


Q ss_pred             eEEEcCCc-CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecccc--ccccEEEeCC
Q 018474          124 VEAIVPDA-SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFY--FANGIALSKN  200 (355)
Q Consensus       124 ~~~~~~~~-~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~--~pngi~~~~d  200 (355)
                      .+.+.... ..-..-++.-++.||+......            ......+++||+.+++++.+.....  ....++. -+
T Consensus       140 W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~------------~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~  206 (301)
T 2vpj_A          140 WSMLGDMQTAREGAGLVVASGVIYCLGGYDG------------LNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL-LN  206 (301)
T ss_dssp             EEEEEECSSCCBSCEEEEETTEEEEECCBCS------------SCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ET
T ss_pred             EEECCCCCCCcccceEEEECCEEEEECCCCC------------CcccceEEEEeCCCCcEEeCCCCCcccccceEEE-EC
Confidence            44443321 1112222223788998643210            0123469999999999987642211  1112222 24


Q ss_pred             CCEEEEEeCC-----CCeEEEEEeCC
Q 018474          201 EDFVVVCESW-----KFRCRRYWLKG  221 (355)
Q Consensus       201 g~~l~v~~~~-----~~~i~~~~~~~  221 (355)
                      + .+|+..-.     .+.+++|+++.
T Consensus       207 ~-~i~v~GG~~~~~~~~~v~~yd~~~  231 (301)
T 2vpj_A          207 D-HIYVVGGFDGTAHLSSVEAYNIRT  231 (301)
T ss_dssp             T-EEEEECCBCSSSBCCCEEEEETTT
T ss_pred             C-EEEEEeCCCCCcccceEEEEeCCC
Confidence            4 47776532     35689999754

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=93.25  E-value=3.7  Score=35.45  Aligned_cols=145  Identities=11%  Similarity=0.074  Sum_probs=78.0

Q ss_pred             CCeEEEE-ec-----CCEEEEEEcCCCeeEEeeccCC-C-cccCeEECCCCCEEEEeCC------CcEEEEcC-CC-eEE
Q 018474           63 KGALYTA-TR-----DGWVKYFILHNETLVNWKHIDS-Q-SLLGLTTTKDGGVILCDNE------KGLLKVTE-EG-VEA  126 (355)
Q Consensus        63 ~g~l~~~-~~-----~g~i~~~~~~~g~~~~~~~~~~-~-p~~gl~~d~~g~L~v~~~~------~gl~~~~~-~g-~~~  126 (355)
                      ++.+|+- ..     ...++++|+.+++++....... + -+ +++. -+++||+....      ..+.+++. +. .+.
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~  138 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTL-GAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH  138 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEEEE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccce-EEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeEee
Confidence            5667763 21     2458999999999887754321 1 12 2333 36788885421      13677884 55 555


Q ss_pred             EcCCc-CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecccc--ccccEEEeCCCCE
Q 018474          127 IVPDA-SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFY--FANGIALSKNEDF  203 (355)
Q Consensus       127 ~~~~~-~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~--~pngi~~~~dg~~  203 (355)
                      +.... ..-..-++.-++.||+......     .     .......+++||+.+++++.+.....  ....++. -++ .
T Consensus       139 ~~~~p~~r~~~~~~~~~~~iyv~GG~~~-----~-----~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~-~  206 (302)
T 2xn4_A          139 VAPMNTRRSSVGVGVVGGLLYAVGGYDV-----A-----SRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV-LNN-L  206 (302)
T ss_dssp             ECCCSSCCBSCEEEEETTEEEEECCEET-----T-----TTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETT-E
T ss_pred             cCCCCCcccCceEEEECCEEEEEeCCCC-----C-----CCccccEEEEEeCCCCcEEECCCCccccccccEEE-ECC-E
Confidence            44322 1111222224678998643200     0     00113469999999999987643211  1112233 244 4


Q ss_pred             EEEEeCC-----CCeEEEEEeCC
Q 018474          204 VVVCESW-----KFRCRRYWLKG  221 (355)
Q Consensus       204 l~v~~~~-----~~~i~~~~~~~  221 (355)
                      +|+..-.     .+.+++|+++.
T Consensus       207 iyv~GG~~~~~~~~~~~~yd~~~  229 (302)
T 2xn4_A          207 LYAVGGHDGPLVRKSVEVYDPTT  229 (302)
T ss_dssp             EEEECCBSSSSBCCCEEEEETTT
T ss_pred             EEEECCCCCCcccceEEEEeCCC
Confidence            7777522     34688999754

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=93.22  E-value=4  Score=35.66  Aligned_cols=207  Identities=12%  Similarity=0.053  Sum_probs=104.3

Q ss_pred             EEEEEEcCCCeeEEeeccC--CCcccCeEECCCCCEEEEeCC----C--------cEEEEcC-CC-eEEEcCCc-CCccc
Q 018474           74 WVKYFILHNETLVNWKHID--SQSLLGLTTTKDGGVILCDNE----K--------GLLKVTE-EG-VEAIVPDA-SFTND  136 (355)
Q Consensus        74 ~i~~~~~~~g~~~~~~~~~--~~p~~gl~~d~~g~L~v~~~~----~--------gl~~~~~-~g-~~~~~~~~-~~~~~  136 (355)
                      .+.++|+.++++.......  .+.. .-+.-.++.||+....    .        .+++++. ++ .+.+.... ..-..
T Consensus        25 ~~~~yd~~~~~W~~~~~~~~~~r~~-~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~  103 (318)
T 2woz_A           25 AAVAYDPMENECYLTALAEQIPRNH-SSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF  103 (318)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCSSE-EEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSC
T ss_pred             ceEEECCCCCceecccCCccCCccc-eEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccccc
Confidence            4789999999887632221  1211 1223357889886531    0        1677884 55 55543322 11112


Q ss_pred             EEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccc--cccccEEEeCCCCEEEEEeCC----
Q 018474          137 VIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGF--YFANGIALSKNEDFVVVCESW----  210 (355)
Q Consensus       137 l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~--~~pngi~~~~dg~~l~v~~~~----  210 (355)
                      -+..-++.||+.......          .......+++||+.+++++.+....  ......+. .+++ +|+..-.    
T Consensus       104 ~~~~~~~~iyv~GG~~~~----------~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~-iyv~GG~~~~~  171 (318)
T 2woz_A          104 GLGEVDDKIYVVAGKDLQ----------TEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGM-IYCLGGKTDDK  171 (318)
T ss_dssp             EEEEETTEEEEEEEEBTT----------TCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTE-EEEECCEESSS
T ss_pred             ceEEECCEEEEEcCccCC----------CCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCE-EEEEcCCCCCC
Confidence            222236788876432000          0011346899999999998764321  11122333 4454 7776421    


Q ss_pred             --CCeEEEEEeCCCCCcceeEecccCCCCcC---ceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhccc
Q 018474          211 --KFRCRRYWLKGDRAGILDAFIENLPGGPD---NINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLL  285 (355)
Q Consensus       211 --~~~i~~~~~~~~~~~~~~~~~~~~~g~p~---~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (355)
                        .+.+++|+++..   +.+... ..+. |.   ..+. -+|+|||.......                           
T Consensus       172 ~~~~~~~~yd~~~~---~W~~~~-~~p~-~r~~~~~~~-~~~~iyv~GG~~~~---------------------------  218 (318)
T 2woz_A          172 KCTNRVFIYNPKKG---DWKDLA-PMKT-PRSMFGVAI-HKGKIVIAGGVTED---------------------------  218 (318)
T ss_dssp             CBCCCEEEEETTTT---EEEEEC-CCSS-CCBSCEEEE-ETTEEEEEEEEETT---------------------------
T ss_pred             CccceEEEEcCCCC---EEEECC-CCCC-CcccceEEE-ECCEEEEEcCcCCC---------------------------
Confidence              345899997542   233222 2221 22   2222 24678876543110                           


Q ss_pred             CCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeCCEEEEe
Q 018474          286 PMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLA  333 (355)
Q Consensus       286 ~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~  333 (355)
                          .....+.+||+++.+....-.-|..+   ....++..+++||+-
T Consensus       219 ----~~~~~~~~yd~~~~~W~~~~~~p~~r---~~~~~~~~~~~i~v~  259 (318)
T 2woz_A          219 ----GLSASVEAFDLKTNKWEVMTEFPQER---SSISLVSLAGSLYAI  259 (318)
T ss_dssp             ----EEEEEEEEEETTTCCEEECCCCSSCC---BSCEEEEETTEEEEE
T ss_pred             ----CccceEEEEECCCCeEEECCCCCCcc---cceEEEEECCEEEEE
Confidence                01146889999555544332223322   233456678898884

>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}

Probab=92.52  E-value=9.5  Score=38.21  Aligned_cols=100  Identities=8%  Similarity=0.025  Sum_probs=61.7

Q ss_pred             CCCCCCceEEEeeCC-CeEEEEecCCEEEEEEcCCCeeEEeeccC------------CCcccCeEECC--CCCEEEEeC-
Q 018474           49 GCVNHPEDVSVVVSK-GALYTATRDGWVKYFILHNETLVNWKHID------------SQSLLGLTTTK--DGGVILCDN-  112 (355)
Q Consensus        49 ~~~~~p~~i~~d~~~-g~l~~~~~~g~i~~~~~~~g~~~~~~~~~------------~~p~~gl~~d~--~g~L~v~~~-  112 (355)
                      |....-.+|+++|.+ +.+|+++..|+|++-.-....++......            .... .|++|+  .+++|++.. 
T Consensus        18 g~~g~i~~i~~~p~~~~~~y~~~~~ggv~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~-~ia~dp~~~~~~~~~~g~   96 (763)
T 3a0f_A           18 SGGGFISGLVAHPTEKDLIYARTDIGGTYRWNAAKWEWEPITDFIINNALAGNGANLLGTE-SIALDPHNPDRLYLAQGD   96 (763)
T ss_dssp             CBCSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCBTTCSSSCCCCCCSEE-EEECCTTCTTCEEEEECS
T ss_pred             cCCCceeEEEeCCCCCCEEEEEeccCcEEEECCCCCCeeECccCccccccCCCccccccee-EEEECCCCCCEEEEEecc
Confidence            334567788998755 67999988888998876445677654311            1245 677886  368999864 


Q ss_pred             ------CCcEEEEcCCC--eEEEcCCc---------CCcccEEEccC--CcEEEEe
Q 018474          113 ------EKGLLKVTEEG--VEAIVPDA---------SFTNDVIAASD--GTLYFTV  149 (355)
Q Consensus       113 ------~~gl~~~~~~g--~~~~~~~~---------~~~~~l~~d~d--G~ly~~d  149 (355)
                            ..+|++=...|  -+.+....         .....+++++.  +.+|+..
T Consensus        97 ~~~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~  152 (763)
T 3a0f_A           97 YVQWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGS  152 (763)
T ss_dssp             CTTTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEEC
T ss_pred             cccCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEe
Confidence                  24565554444  44433211         01146888864  5788863

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=92.42  E-value=5.5  Score=35.30  Aligned_cols=152  Identities=9%  Similarity=0.043  Sum_probs=77.8

Q ss_pred             CCeEEEEe--cCCEEEEEEcCC--CeeEEeeccC--CCc-ccCeEECCCCCEEEEeCC-----------CcEEEEcC-CC
Q 018474           63 KGALYTAT--RDGWVKYFILHN--ETLVNWKHID--SQS-LLGLTTTKDGGVILCDNE-----------KGLLKVTE-EG  123 (355)
Q Consensus        63 ~g~l~~~~--~~g~i~~~~~~~--g~~~~~~~~~--~~p-~~gl~~d~~g~L~v~~~~-----------~gl~~~~~-~g  123 (355)
                      ++.+|+..  ....++++|+.+  .+++......  .+. + +++. -+++|||....           ..++++|. +.
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~   96 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQA-TSAF-IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN   96 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSC-EEEE-ETTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccc-eEEE-ECCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence            66788742  345799999963  7777664432  121 2 2333 36789985322           24788884 55


Q ss_pred             -eEEEcCCc---CCcccEEEccCCcEEEEeCCCCCCCcccc----------------------ccccccCCCCeEEEEeC
Q 018474          124 -VEAIVPDA---SFTNDVIAASDGTLYFTVASTKYTPTDFY----------------------KDMAEGKPYGQLRKYDP  177 (355)
Q Consensus       124 -~~~~~~~~---~~~~~l~~d~dG~ly~~d~~~~~~~~~~~----------------------~~~~~~~~~g~l~~~dp  177 (355)
                       -+.+....   ..-..+++ -++.||+.............                      ...........+++||+
T Consensus        97 ~W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~  175 (357)
T 2uvk_A           97 SWVKLMSHAPMGMAGHVTFV-HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDP  175 (357)
T ss_dssp             EEEECSCCCSSCCSSEEEEE-ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEET
T ss_pred             cEEECCCCCCcccccceEEE-ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeC
Confidence             44443321   11122333 67889986542100000000                      00000012357999999


Q ss_pred             CCCeEEEeecccc--cc-ccEEEeCCCCEEEEEeC------CCCeEEEEEe
Q 018474          178 KLKETTVLHEGFY--FA-NGIALSKNEDFVVVCES------WKFRCRRYWL  219 (355)
Q Consensus       178 ~~~~~~~~~~~~~--~p-ngi~~~~dg~~l~v~~~------~~~~i~~~~~  219 (355)
                      .+.+++.+.....  .. .+++.. ++ .+|+..-      ....+++|++
T Consensus       176 ~~~~W~~~~~~p~~~~~~~~~~~~-~~-~iyv~GG~~~~~~~~~~v~~~d~  224 (357)
T 2uvk_A          176 STQQWSYAGESPWYGTAGAAVVNK-GD-KTWLINGEAKPGLRTDAVFELDF  224 (357)
T ss_dssp             TTTEEEEEEECSSCCCBSCEEEEE-TT-EEEEECCEEETTEECCCEEEEEC
T ss_pred             CCCcEEECCCCCCCCcccccEEEE-CC-EEEEEeeecCCCcccCceEEEEe
Confidence            9999987753321  11 223332 33 4777642      1346778876

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=92.11  E-value=5.4  Score=34.47  Aligned_cols=147  Identities=11%  Similarity=0.072  Sum_probs=79.4

Q ss_pred             CCeEEEE-e----cCCEEEEEEcCCCeeEEeeccCC-C-cccCeEECCCCCEEEEeCC-------CcEEEEcC-CC-eEE
Q 018474           63 KGALYTA-T----RDGWVKYFILHNETLVNWKHIDS-Q-SLLGLTTTKDGGVILCDNE-------KGLLKVTE-EG-VEA  126 (355)
Q Consensus        63 ~g~l~~~-~----~~g~i~~~~~~~g~~~~~~~~~~-~-p~~gl~~d~~g~L~v~~~~-------~gl~~~~~-~g-~~~  126 (355)
                      ++.+|+- .    ....++++|+.+++++....... + -+ +++. -+++||+....       ..+++++. +. .+.
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~  132 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSL-AACA-AEGKIYTSGGSEVGNSALYLFECYDTRTESWHT  132 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSC-EEEE-ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccce-eEEE-ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence            5567763 2    23678999999999887754321 1 12 2222 36789886421       24788884 55 555


Q ss_pred             EcCCc-CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecccc--ccccEEEeCCCCE
Q 018474          127 IVPDA-SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFY--FANGIALSKNEDF  203 (355)
Q Consensus       127 ~~~~~-~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~--~pngi~~~~dg~~  203 (355)
                      +.... ..-..-++.-++.||+........   .     .+.....+++||+.+++++.+.....  ....++.. ++ .
T Consensus       133 ~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~---~-----~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~-~  202 (306)
T 3ii7_A          133 KPSMLTQRCSHGMVEANGLIYVCGGSLGNN---V-----SGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KD-K  202 (306)
T ss_dssp             ECCCSSCCBSCEEEEETTEEEEECCEESCT---T-----TCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TT-E
T ss_pred             CCCCcCCcceeEEEEECCEEEEECCCCCCC---C-----cccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CC-E
Confidence            54322 112222233477899864320000   0     00013469999999999987753211  11223333 44 4


Q ss_pred             EEEEeCC-----CCeEEEEEeCC
Q 018474          204 VVVCESW-----KFRCRRYWLKG  221 (355)
Q Consensus       204 l~v~~~~-----~~~i~~~~~~~  221 (355)
                      +|+..-.     .+.+++|+++.
T Consensus       203 i~v~GG~~~~~~~~~~~~yd~~~  225 (306)
T 3ii7_A          203 IFAVGGQNGLGGLDNVEYYDIKL  225 (306)
T ss_dssp             EEEECCEETTEEBCCEEEEETTT
T ss_pred             EEEEeCCCCCCCCceEEEeeCCC
Confidence            7776421     24688898754

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=91.52  E-value=6.4  Score=34.13  Aligned_cols=132  Identities=10%  Similarity=0.124  Sum_probs=73.3

Q ss_pred             CEEEEEEcCCCeeEEeeccC-CCc-ccCeEECCCCCEEEEeC------CCcEEEEcC-CC-eEEEcCCc--CCcccEEEc
Q 018474           73 GWVKYFILHNETLVNWKHID-SQS-LLGLTTTKDGGVILCDN------EKGLLKVTE-EG-VEAIVPDA--SFTNDVIAA  140 (355)
Q Consensus        73 g~i~~~~~~~g~~~~~~~~~-~~p-~~gl~~d~~g~L~v~~~------~~gl~~~~~-~g-~~~~~~~~--~~~~~l~~d  140 (355)
                      ..++++|+.+++++...... .+. + +++. -+++||+...      ...+.+++. +. .+.+....  ..-...++ 
T Consensus        90 ~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-  166 (308)
T 1zgk_A           90 SALDCYNPMTNQWSPCAPMSVPRNRI-GVGV-IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAV-  166 (308)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBTC-EEEE-ETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE-
T ss_pred             ceEEEECCCCCeEeECCCCCcCcccc-EEEE-ECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEE-
Confidence            45889999999888764322 121 2 2232 3678998642      134788884 55 55543322  11222222 


Q ss_pred             cCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccc--cccccEEEeCCCCEEEEEeCC-----CCe
Q 018474          141 SDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGF--YFANGIALSKNEDFVVVCESW-----KFR  213 (355)
Q Consensus       141 ~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~--~~pngi~~~~dg~~l~v~~~~-----~~~  213 (355)
                      -++.||+......            ......+++||+.+.+++.+....  .....++.. ++ .+|+..-.     .+.
T Consensus       167 ~~~~iyv~GG~~~------------~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~  232 (308)
T 1zgk_A          167 LNRLLYAVGGFDG------------TNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HN-CIYAAGGYDGQDQLNS  232 (308)
T ss_dssp             ETTEEEEECCBCS------------SCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TT-EEEEECCBCSSSBCCC
T ss_pred             ECCEEEEEeCCCC------------CCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CC-EEEEEeCCCCCCccce
Confidence            3678888643210            011346999999999988764321  111223333 44 47776522     356


Q ss_pred             EEEEEeCC
Q 018474          214 CRRYWLKG  221 (355)
Q Consensus       214 i~~~~~~~  221 (355)
                      +++|+++.
T Consensus       233 v~~yd~~~  240 (308)
T 1zgk_A          233 VERYDVET  240 (308)
T ss_dssp             EEEEETTT
T ss_pred             EEEEeCCC
Confidence            89999854

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=90.94  E-value=9.2  Score=34.89  Aligned_cols=142  Identities=13%  Similarity=0.105  Sum_probs=79.4

Q ss_pred             CCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCe---------eEE--eeccCCCcccCeEECCCCCEEEEeCCCcEEEE
Q 018474           51 VNHPEDVSVVVSKGALYTATRDGWVKYFILHNET---------LVN--WKHIDSQSLLGLTTTKDGGVILCDNEKGLLKV  119 (355)
Q Consensus        51 ~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~---------~~~--~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~  119 (355)
                      +.....+++.+..|.++++..++ +..++.++.+         ++.  ...... +. .+++ .+..|+++ ..+++..+
T Consensus        37 ~~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~-~l~f-d~~~L~v~-~~~~l~v~  111 (388)
T 1xip_A           37 FASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VI-FVCF-HGDQVLVS-TRNALYSL  111 (388)
T ss_dssp             SSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EE-EEEE-ETTEEEEE-ESSEEEEE
T ss_pred             cccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-ee-EEEE-CCCEEEEE-cCCcEEEE
Confidence            34567888997778888887765 5557642221         111  112234 77 8999 34457888 45567777


Q ss_pred             c-CCC--eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEE
Q 018474          120 T-EEG--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIA  196 (355)
Q Consensus       120 ~-~~g--~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~  196 (355)
                      + .+-  ..........++++..-+. ++.+.                  +..|.|+.+|.++++...+..   ....++
T Consensus       112 dv~sl~~~~~~~~~~~~v~~i~~~~p-~~av~------------------~~dG~L~v~dl~~~~~~~~~~---~Vs~v~  169 (388)
T 1xip_A          112 DLEELSEFRTVTSFEKPVFQLKNVNN-TLVIL------------------NSVNDLSALDLRTKSTKQLAQ---NVTSFD  169 (388)
T ss_dssp             ESSSTTCEEEEEECSSCEEEEEECSS-EEEEE------------------ETTSEEEEEETTTCCEEEEEE---SEEEEE
T ss_pred             EchhhhccCccceeecceeeEEecCC-CEEEE------------------ECCCCEEEEEccCCccccccC---CceEEE
Confidence            6 221  2211111112333332221 22222                  235788888887666544332   345789


Q ss_pred             EeCCCCEEEEEeCCCCeEEEEEeCCC
Q 018474          197 LSKNEDFVVVCESWKFRCRRYWLKGD  222 (355)
Q Consensus       197 ~~~dg~~l~v~~~~~~~i~~~~~~~~  222 (355)
                      ++|+|  +.+. ...+.+..|++++.
T Consensus       170 WSpkG--~~vg-~~dg~i~~~~~~~~  192 (388)
T 1xip_A          170 VTNSQ--LAVL-LKDRSFQSFAWRNG  192 (388)
T ss_dssp             ECSSE--EEEE-ETTSCEEEEEEETT
T ss_pred             EcCCc--eEEE-EcCCcEEEEcCCCc
Confidence            99999  3333 34578888887654

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=90.53  E-value=1  Score=40.44  Aligned_cols=105  Identities=8%  Similarity=0.070  Sum_probs=59.5

Q ss_pred             CCeEEEEecCCEEEEEEcCCCeeEEeeccC--CCcccCeE---ECCCCCEEEEe--CCCcEEEEcC-CCeEEEcCCc---
Q 018474           63 KGALYTATRDGWVKYFILHNETLVNWKHID--SQSLLGLT---TTKDGGVILCD--NEKGLLKVTE-EGVEAIVPDA---  131 (355)
Q Consensus        63 ~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~--~~p~~gl~---~d~~g~L~v~~--~~~gl~~~~~-~g~~~~~~~~---  131 (355)
                      ++.+|+++.+|.|+.+|.++|+..--....  ..+. ...   ...+|.+|+..  ..+.|+.++. +|.+.+....   
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~-~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~l   88 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLI-EIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQL   88 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSE-ECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHH
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcE-EecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccc
Confidence            568999999999999999999754222221  1111 110   01245677764  3456888884 6622221111   


Q ss_pred             --CCccc----EEE------ccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee
Q 018474          132 --SFTND----VIA------ASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH  186 (355)
Q Consensus       132 --~~~~~----l~~------d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~  186 (355)
                        ..|..    .++      +.+|.+|++.                  ..|.++.+|..+|+.....
T Consensus        89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs------------------~~g~l~ald~~tG~~~W~~  137 (339)
T 2be1_A           89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGS------------------MRTIMYTINMLNGEIISAF  137 (339)
T ss_dssp             HTTCSEEEECC----------CCEEEEECE------------------EEEEEEEEETTTCCEEEEE
T ss_pred             eeccccccCCCceeecccccccCCEEEEEe------------------cCCEEEEEECCCCcEEEEE
Confidence              11111    112      2466777753                  3568999999999876543

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=89.12  E-value=19  Score=35.81  Aligned_cols=112  Identities=6%  Similarity=0.046  Sum_probs=61.0

Q ss_pred             CeEEC-CCCC-E-EEEeCCC----cEEEEcC-CCeEEEcCCc-CCcccEEEccCC-cEEEEeCCCCCCCccccccccccC
Q 018474           98 GLTTT-KDGG-V-ILCDNEK----GLLKVTE-EGVEAIVPDA-SFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGK  167 (355)
Q Consensus        98 gl~~d-~~g~-L-~v~~~~~----gl~~~~~-~g~~~~~~~~-~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~  167 (355)
                      +..+. +||+ | |..+..+    .|+.++. +|.+.+.... ....+++.++|| .|+++....             ..
T Consensus       178 ~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~~~~~~WspDg~~l~y~~~d~-------------~~  244 (751)
T 2xe4_A          178 EVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKDE-------------TL  244 (751)
T ss_dssp             EEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEECSCCEECSSTTEEEEEEECT-------------TC
T ss_pred             eeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCceeeEEEecCCCEEEEEEECC-------------CC
Confidence            56788 8997 3 3333221    2777773 3311111111 223567889998 577663220             00


Q ss_pred             CCCeEEEEeCCCCe---EEEee-ccccccccEEEeCCCCEEEEEeCC--CCeEEEEEeCCC
Q 018474          168 PYGQLRKYDPKLKE---TTVLH-EGFYFANGIALSKNEDFVVVCESW--KFRCRRYWLKGD  222 (355)
Q Consensus       168 ~~g~l~~~dp~~~~---~~~~~-~~~~~pngi~~~~dg~~l~v~~~~--~~~i~~~~~~~~  222 (355)
                      ....|++++..+++   ...+. ....+-.++.++|||+.|+++...  ...|+.+++++.
T Consensus       245 ~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~  305 (751)
T 2xe4_A          245 RENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG  305 (751)
T ss_dssp             CEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred             CCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence            01257888776653   12222 111223467899999988877632  456888887653

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=85.42  E-value=4.2  Score=36.43  Aligned_cols=26  Identities=12%  Similarity=0.196  Sum_probs=22.8

Q ss_pred             CCCeEEEEecCCEEEEEEcCCCeeEE
Q 018474           62 SKGALYTATRDGWVKYFILHNETLVN   87 (355)
Q Consensus        62 ~~g~l~~~~~~g~i~~~~~~~g~~~~   87 (355)
                      .++.+|+++.+|+++.+|..+|+...
T Consensus       110 ~~g~Vy~Gs~~g~l~ald~~tG~~~W  135 (339)
T 2be1_A          110 EDEKVYTGSMRTIMYTINMLNGEIIS  135 (339)
T ss_dssp             CCEEEEECEEEEEEEEEETTTCCEEE
T ss_pred             cCCEEEEEecCCEEEEEECCCCcEEE
Confidence            47889999999999999999998653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	355
d1v04a_	340	b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PO	1e-34
d2p4oa1	302	b.68.6.3 (A:4-305) Hypothetical protein All0351 ho	2e-05
d1pjxa_	314	b.68.6.1 (A:) Diisopropylfluorophosphatase (phosph	3e-04

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 340

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

 Score =  127 bits (321), Expect = 1e-34
 Identities = 56/359 (15%), Positives = 110/359 (30%), Gaps = 60/359 (16%)

Query: 19  FFSLSVSSLASLLSISKESSSMKGLT-KLGEGCVNHPEDVSVVVSKGALYTATRDGW--- 74
            F    SS  +  ++ +E + ++     L +G  N  ED+  ++  G  + ++   +   
Sbjct: 1   LFDRQKSSFQTRFNVHREVTPVELPNCNLVKGIDNGSEDL-EILPNGLAFISSGLKYPGI 59

Query: 75  --------VKYFILHNETL--------VNWKHIDSQSL----LGLTTTKDG-GVILCDNE 113
                    K  ++             +    +D  S     +      D    +L  N 
Sbjct: 60  MSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNH 119

Query: 114 KG------LLKVTEEGVEAI------VPDASFTNDVIAASDGTLYFTVASTKYTPTDFYK 161
            G      + K  EE    +             ND++A      Y T       P     
Sbjct: 120 PGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSW 179

Query: 162 DMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKG 221
           +M  G  +  +  Y P   +  V+ EGF FANGI +S +  +V + E    +   Y    
Sbjct: 180 EMHLGLAWSFVTYYSPN--DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA 237

Query: 222 DRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLI 281
           +        + +     DNI++ P           N               +        
Sbjct: 238 NWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPNG------------MRIFFYDAENP 284

Query: 282 SLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFI 340
                       R+  +   + K+   + + + T +   T AA + G L + ++    +
Sbjct: 285 PGSEV------LRIQDILSEEPKVTVVYAE-NGTVLQGSTVAAVYKGKLLIGTVFHKAL 336

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Length = 302

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

 Score = 43.5 bits (101), Expect = 2e-05
 Identities = 29/246 (11%), Positives = 58/246 (23%), Gaps = 33/246 (13%)

Query: 124 VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT 183
           +    P  +F  ++ +A DGT++ T                     G++    P      
Sbjct: 20  IITSFPVNTFLENLASAPDGTIFVT-----------------NHEVGEIVSITPD-GNQQ 61

Query: 184 VLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINL 243
           +        +G+A + N D  V             L      +            + I  
Sbjct: 62  IHATVEGKVSGLAFTSNGDL-VATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITP 120

Query: 244 APDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLIS----LLLPMGSDAGARVVKVD 299
             D  +           +  + +      L        +         G       + V 
Sbjct: 121 LSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVS 180

Query: 300 GNDGKIIRDFNDPDATYISFVTSAAEF----------DGNLYLASLQSNFIGILPLDGPE 349
             +  ++                  E           +GNLY A+   N +  +  D   
Sbjct: 181 NTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRST 240

Query: 350 PQLATI 355
             +A  
Sbjct: 241 TIIAQA 246

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} Length = 314

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

 Score = 40.0 bits (92), Expect = 3e-04
 Identities = 21/142 (14%), Positives = 41/142 (28%), Gaps = 17/142 (11%)

Query: 117 LKVTEEGVEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYD 176
           + V E     +  D       +   +G  Y      +            GKP G++ + D
Sbjct: 3   IPVIEPLFTKVTEDIPGAEGPVFDKNGDFYIVAPEVEVN----------GKPAGEILRID 52

Query: 177 PKLKETTVLHEGFY-----FANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFI 231
            K  + TV+ +           G    ++ +  +     +         G    I     
Sbjct: 53  LKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ-LFVADMRLGLLVVQTDGTFEEIAKKDS 111

Query: 232 ENLP-GGPDNINLAPDGSFWIG 252
           E     G ++     +G+ WI 
Sbjct: 112 EGRRMQGCNDCAFDYEGNLWIT 133

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	355
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.96
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.94
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.94
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	99.93
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.88
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.88
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.81
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.77
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.67
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.63
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.6
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.58
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.56
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.54
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.52
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.51
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.43
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.4
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.27
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.24
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.2
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.04
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.99
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.97
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	98.95
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	98.92
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.91
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.89
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	98.88
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.83
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	98.75
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	98.73
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.67
d1tbga_	340	beta1-subunit of the signal-transducing G protein	98.59
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	98.58
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.57
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.54
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	98.51
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	98.5
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	98.48
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	98.48
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.47
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	98.41
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	98.37
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	98.36
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.36
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.27
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	98.26
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	98.23
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	98.2
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.11
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.1
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	98.01
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.01
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	97.92
d1tbga_	340	beta1-subunit of the signal-transducing G protein	97.9
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	97.87
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	97.85
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	97.8
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	97.74
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.61
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	97.37
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.37
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	97.33
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.21
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	97.16
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	96.75
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.32
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	96.28
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.19
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	95.8
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	95.78
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.75
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	95.63
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	95.56
d1tl2a_	235	Tachylectin-2 {Japanese horseshoe crab (Tachypleus	95.55
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	95.47
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.43
d2ebsa1	427	Oligoxyloglucan reducing end-specific cellobiohydr	95.05
d1tl2a_	235	Tachylectin-2 {Japanese horseshoe crab (Tachypleus	94.96
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	94.85
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	94.8
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	94.78
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	94.75
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	94.53
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.36
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	93.98
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	93.27
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	93.1
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	92.8
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	92.17
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	91.43
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	91.21
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	90.42
d2ebsa1	427	Oligoxyloglucan reducing end-specific cellobiohydr	87.99
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	85.53
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	84.64
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	83.66

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.96  E-value=2.7e-27  Score=213.96  Aligned_cols=263  Identities=17%  Similarity=0.260  Sum_probs=194.8

Q ss_pred             ceEecCCCCCCCceEEEeeCCCeEEEEec--------CCEEEEEEcCCCeeEEeec-----cCCCcccCeEECCCCC-EE
Q 018474           43 LTKLGEGCVNHPEDVSVVVSKGALYTATR--------DGWVKYFILHNETLVNWKH-----IDSQSLLGLTTTKDGG-VI  108 (355)
Q Consensus        43 ~~~~~~~~~~~p~~i~~d~~~g~l~~~~~--------~g~i~~~~~~~g~~~~~~~-----~~~~p~~gl~~d~~g~-L~  108 (355)
                      .+.+.++ +.+||++++| .+|++|+.+.        +|+|+++++++++...+..     ..+.|. ||++|++|+ ||
T Consensus        10 ~~~v~~~-~~g~EGpa~d-~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~-Gl~~~~dg~~l~   86 (314)
T d1pjxa_          10 FTKVTED-IPGAEGPVFD-KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPA-GCQCDRDANQLF   86 (314)
T ss_dssp             CEEEECC-CTTCEEEEEC-TTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEE-EEEECSSSSEEE
T ss_pred             eEEeecC-CCCCeEeEEe-CCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcce-eEEEeCCCCEEE
Confidence            4667766 7999999999 6778888643        4689999998887665532     124689 999999985 88


Q ss_pred             EEeCCCcEEEEcCCC-eEEEcC-C-----cCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCe
Q 018474          109 LCDNEKGLLKVTEEG-VEAIVP-D-----ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE  181 (355)
Q Consensus       109 v~~~~~gl~~~~~~g-~~~~~~-~-----~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~  181 (355)
                      +++..+++++++.++ ...+.. .     ...||++++|++|+|||+|+............  .....|++|+++++ ++
T Consensus        87 vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~--~~~~~G~v~~~~~d-g~  163 (314)
T d1pjxa_          87 VADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRS--MQEKFGSIYCFTTD-GQ  163 (314)
T ss_dssp             EEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBT--TSSSCEEEEEECTT-SC
T ss_pred             EEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccce--eccCCceEEEEeec-Cc
Confidence            998878899999766 444322 1     25799999999999999997643322222111  22446799999986 45


Q ss_pred             EEEeeccccccccEEEeCCCC----EEEEEeCCCCeEEEEEeCCC-CCcceeEecc---cCCCCcCceEECCCCCEEEEe
Q 018474          182 TTVLHEGFYFANGIALSKNED----FVVVCESWKFRCRRYWLKGD-RAGILDAFIE---NLPGGPDNINLAPDGSFWIGL  253 (355)
Q Consensus       182 ~~~~~~~~~~pngi~~~~dg~----~l~v~~~~~~~i~~~~~~~~-~~~~~~~~~~---~~~g~p~~i~~d~~G~lwv~~  253 (355)
                      ...+..++..|||++++++++    .||++++..++|++|+++.. .....+.+..   ...+.|||+++|++|+|||+.
T Consensus       164 ~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~  243 (314)
T d1pjxa_         164 MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVAN  243 (314)
T ss_dssp             EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEE
T ss_pred             eeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEE
Confidence            666677788999999999875    79999999999999998643 2333444432   223469999999999999999


Q ss_pred             ecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeC--CEEE
Q 018474          254 IKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFD--GNLY  331 (355)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~--g~L~  331 (355)
                      ...                                    +.|.+|||+.|+....+..+..    .++.++..+  ++||
T Consensus       244 ~~~------------------------------------g~I~~~dp~~g~~~~~i~~p~~----~~t~~afg~d~~~ly  283 (314)
T d1pjxa_         244 WGS------------------------------------SHIEVFGPDGGQPKMRIRCPFE----KPSNLHFKPQTKTIF  283 (314)
T ss_dssp             ETT------------------------------------TEEEEECTTCBSCSEEEECSSS----CEEEEEECTTSSEEE
T ss_pred             cCC------------------------------------CEEEEEeCCCCEEEEEEECCCC----CEEEEEEeCCCCEEE
Confidence            763                                    4799999933555566766542    456677654  5799


Q ss_pred             EeecCCCeEEEeeCCCCCCC
Q 018474          332 LASLQSNFIGILPLDGPEPQ  351 (355)
Q Consensus       332 v~~~~~~~i~~~~~~~~~~~  351 (355)
                      |++..+++|.+++++....+
T Consensus       284 Vt~~~~g~i~~~~~~~~G~~  303 (314)
T d1pjxa_         284 VTEHENNAVWKFEWQRNGKK  303 (314)
T ss_dssp             EEETTTTEEEEEECSSCBCC
T ss_pred             EEECCCCcEEEEECCCCChh
Confidence            99999999999998766543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.94  E-value=2.8e-24  Score=192.23  Aligned_cols=237  Identities=17%  Similarity=0.189  Sum_probs=184.3

Q ss_pred             CceEEEeeCCCeEE-EEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEcC-CC-eEEEcCC
Q 018474           54 PEDVSVVVSKGALY-TATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTE-EG-VEAIVPD  130 (355)
Q Consensus        54 p~~i~~d~~~g~l~-~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~-~g-~~~~~~~  130 (355)
                      .|+..+|+.++.|| +...+++|+++++++++.+.+.. ...+. +++.+++|+||++.. +|+++++. +| ++.+...
T Consensus        20 gEgp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~~-~~~~~-~i~~~~dg~l~va~~-~gl~~~d~~tg~~~~l~~~   96 (295)
T d2ghsa1          20 GEGPTFDPASGTAWWFNILERELHELHLASGRKTVHAL-PFMGS-ALAKISDSKQLIASD-DGLFLRDTATGVLTLHAEL   96 (295)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEEC-SSCEE-EEEEEETTEEEEEET-TEEEEEETTTCCEEEEECS
T ss_pred             eeCCeEECCCCEEEEEECCCCEEEEEECCCCeEEEEEC-CCCcE-EEEEecCCCEEEEEe-CccEEeecccceeeEEeee
Confidence            47888997677666 55578999999999998776643 45677 899999999999984 69999995 67 7766542


Q ss_pred             c-----CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEE
Q 018474          131 A-----SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVV  205 (355)
Q Consensus       131 ~-----~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~  205 (355)
                      .     ..+|++.+|++|++|+++....           .....+.+++++  .++.+.+..++..|||+++++|++.+|
T Consensus        97 ~~~~~~~~~nd~~vd~~G~iw~~~~~~~-----------~~~~~g~l~~~~--~g~~~~~~~~~~~~Ng~~~s~d~~~l~  163 (295)
T d2ghsa1          97 ESDLPGNRSNDGRMHPSGALWIGTMGRK-----------AETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGY  163 (295)
T ss_dssp             STTCTTEEEEEEEECTTSCEEEEEEETT-----------CCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEE
T ss_pred             ecCCCcccceeeEECCCCCEEEEecccc-----------ccccceeEeeec--CCcEEEEeeccCCcceeeecCCCceEE
Confidence            2     6799999999999999975411           112345677776  467777778888999999999999999


Q ss_pred             EEeCCCCeEEEEEeCCCC---CcceeEecc--cCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccch
Q 018474          206 VCESWKFRCRRYWLKGDR---AGILDAFIE--NLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGL  280 (355)
Q Consensus       206 v~~~~~~~i~~~~~~~~~---~~~~~~~~~--~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (355)
                      ++++..++|++|+++...   .++...+.+  ...+.|||+++|++|+|||++..+                        
T Consensus       164 ~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~------------------------  219 (295)
T d2ghsa1         164 FVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGE------------------------  219 (295)
T ss_dssp             EEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETT------------------------
T ss_pred             EeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCC------------------------
Confidence            999999999999986432   233344432  345679999999999999999763                        


Q ss_pred             hhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeC---CEEEEeecC-------------CCeEEEee
Q 018474          281 ISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFD---GNLYLASLQ-------------SNFIGILP  344 (355)
Q Consensus       281 ~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~---g~L~v~~~~-------------~~~i~~~~  344 (355)
                                  ++|.+||| +|+.+..+..|.-    .+|++++.+   ++|||+|..             +..|.+++
T Consensus       220 ------------g~V~~~dp-~G~~~~~i~lP~~----~~T~~~FGG~d~~~LyvTta~~~~~~~~~~~~p~~G~l~~~~  282 (295)
T d2ghsa1         220 ------------GAVDRYDT-DGNHIARYEVPGK----QTTCPAFIGPDASRLLVTSAREHLDDDAITANPQHGLTFELG  282 (295)
T ss_dssp             ------------TEEEEECT-TCCEEEEEECSCS----BEEEEEEESTTSCEEEEEEBCTTCCHHHHHHCTTTTCEEECS
T ss_pred             ------------CceEEecC-CCcEeeEecCCCC----ceEEEEEeCCCCCEEEEEECCcCCChhHhccCCCCceEEEEc
Confidence                        47999999 9999999988763    578888753   789999864             35787777


Q ss_pred             CCC
Q 018474          345 LDG  347 (355)
Q Consensus       345 ~~~  347 (355)
                      +.-
T Consensus       283 ~~~  285 (295)
T d2ghsa1         283 IEV  285 (295)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            643

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.94  E-value=4.2e-24  Score=193.24  Aligned_cols=247  Identities=20%  Similarity=0.263  Sum_probs=180.6

Q ss_pred             CCCceEEEeeCCCeEEEE-ecCCEEEEEEcCCCeeEEe-eccCCCcccCeEECCCCCEEEEeCC-----CcEEEEcC-CC
Q 018474           52 NHPEDVSVVVSKGALYTA-TRDGWVKYFILHNETLVNW-KHIDSQSLLGLTTTKDGGVILCDNE-----KGLLKVTE-EG  123 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~-~~~g~i~~~~~~~g~~~~~-~~~~~~p~~gl~~d~~g~L~v~~~~-----~gl~~~~~-~g  123 (355)
                      ...|++++| .+|+||+. ..+++|+++++++++...+ ......|. ||+++++|+|||+...     .+++.++. .+
T Consensus        40 ~~lEG~~~D-~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~-gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~  117 (319)
T d2dg1a1          40 LQLEGLNFD-RQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPA-AIKIHKDGRLFVCYLGDFKSTGGIFAATENGD  117 (319)
T ss_dssp             CCEEEEEEC-TTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEE-EEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred             cCcEeCEEC-CCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCee-EEEECCCCCEEEEecCCCccceeEEEEcCCCc
Confidence            456999999 55667765 4689999999977655443 44456799 9999999999999753     34778775 33


Q ss_pred             -eEEEcCC---cCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeC
Q 018474          124 -VEAIVPD---ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSK  199 (355)
Q Consensus       124 -~~~~~~~---~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~  199 (355)
                       +..+...   ...+|+++++++|++|++|....           .....+.+++++++++.++.+..++..||||++++
T Consensus       118 ~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~-----------~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~  186 (319)
T d2dg1a1         118 NLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGY-----------STNPLGGVYYVSPDFRTVTPIIQNISVANGIALST  186 (319)
T ss_dssp             SCEEEECSSSSCCCEEEEEECTTSCEEEEECCCB-----------TTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECT
T ss_pred             eeeeeccCCCcccCCcceeEEeccceeecccccc-----------cccCcceeEEEecccceeEEEeeccceeeeeeecc
Confidence             4444332   27899999999999999986521           11235689999998888888888889999999999


Q ss_pred             CCCEEEEEeCCCCeEEEEEeCCCCC-cc-ee-E--ecccCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHH
Q 018474          200 NEDFVVVCESWKFRCRRYWLKGDRA-GI-LD-A--FIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELL  274 (355)
Q Consensus       200 dg~~l~v~~~~~~~i~~~~~~~~~~-~~-~~-~--~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~  274 (355)
                      |++.+|++++..++|++|+++.... .. .. .  ......+.|||+++|++|+|||++...                  
T Consensus       187 dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~------------------  248 (319)
T d2dg1a1         187 DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQ------------------  248 (319)
T ss_dssp             TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETT------------------
T ss_pred             ccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCC------------------
Confidence            9999999999999999999864321 11 11 1  111222459999999999999999763                  


Q ss_pred             HhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCC--cccceeEEEEeC--CEEEEeec-----CCCeEEEeeC
Q 018474          275 DAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDAT--YISFVTSAAEFD--GNLYLASL-----QSNFIGILPL  345 (355)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~--~~~~~~~~~~~~--g~L~v~~~-----~~~~i~~~~~  345 (355)
                                        +.|.+||| +|+.+..+..|...  .....+.+...+  ..||+++.     .+..|.+++.
T Consensus       249 ------------------g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~g~l~~~~~  309 (319)
T d2dg1a1         249 ------------------GRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNG  309 (319)
T ss_dssp             ------------------TEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEEC
T ss_pred             ------------------CEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcCCCCcCCceeEEEEeC
Confidence                              57999999 99999999877531  122445555543  56777653     3456777766


Q ss_pred             CCC
Q 018474          346 DGP  348 (355)
Q Consensus       346 ~~~  348 (355)
                      ...
T Consensus       310 ~~~  312 (319)
T d2dg1a1         310 FAK  312 (319)
T ss_dssp             SSC
T ss_pred             CCc
Confidence            543

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.93  E-value=2.4e-23  Score=189.09  Aligned_cols=274  Identities=20%  Similarity=0.310  Sum_probs=190.2

Q ss_pred             CceEecCCCCCCCceEEEeeCCCeEEEEec-------------CCEEEEEEcCCCe--eEEeecc-------CCCcccCe
Q 018474           42 GLTKLGEGCVNHPEDVSVVVSKGALYTATR-------------DGWVKYFILHNET--LVNWKHI-------DSQSLLGL   99 (355)
Q Consensus        42 ~~~~~~~~~~~~p~~i~~d~~~g~l~~~~~-------------~g~i~~~~~~~g~--~~~~~~~-------~~~p~~gl   99 (355)
                      .++.+ ++...+||+|+++ ++|.+|+++.             .|.|+.+|.++.+  ...+...       ...|+ ||
T Consensus        26 ~C~~i-~g~~~G~EDi~~~-~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~Ph-Gi  102 (340)
T d1v04a_          26 NCNLV-KGIDNGSEDLEIL-PNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPH-GI  102 (340)
T ss_dssp             SCEEC-TTCCSCCCEEEEC-TTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEE-EE
T ss_pred             CceEc-CCCCCCcceEEEC-CCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceecc-ce
Confidence            44444 4556799999999 6888888763             3889999875543  2222211       13688 88


Q ss_pred             EE--CCCC--CEEEEeCC--C---cEEEEcCCC--eE---EEcCC-cCCcccEEEccCCcEEEEeCCCCCCCcccccccc
Q 018474          100 TT--TKDG--GVILCDNE--K---GLLKVTEEG--VE---AIVPD-ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMA  164 (355)
Q Consensus       100 ~~--d~~g--~L~v~~~~--~---gl~~~~~~g--~~---~~~~~-~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~  164 (355)
                      .+  +.+|  +|||..+.  +   .++.++.++  ++   .+..+ ...||++++..+|.+|+|+............+.+
T Consensus       103 ~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~  182 (340)
T d1v04a_         103 STFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMH  182 (340)
T ss_dssp             EEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHH
T ss_pred             eEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHh
Confidence            65  5566  47888763  2   266666433  32   23333 2889999999999999998642211111222334


Q ss_pred             ccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEEC
Q 018474          165 EGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLA  244 (355)
Q Consensus       165 ~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d  244 (355)
                      .+.+.+.++.||+  ++.+.+.+++.+||||++++|++.+||+++..++|++|++++........+. .+++.|||+.+|
T Consensus       183 ~~~~~g~v~~~~~--~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~-~l~~~pDNi~~d  259 (340)
T d1v04a_         183 LGLAWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVD  259 (340)
T ss_dssp             TTCCCEEEEEECS--SCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEEC
T ss_pred             hcCCceeEEEEcC--CceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEe-cCCCCCCccEEe
Confidence            5566788999986  4567778889999999999999999999999999999999765433333333 588899999998


Q ss_pred             C-CCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEE---eCCCCeEEEEEECCCCCcccce
Q 018474          245 P-DGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKV---DGNDGKIIRDFNDPDATYISFV  320 (355)
Q Consensus       245 ~-~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~g~~~~~~~~~~g~~~~~~  320 (355)
                      + +|.+|++........   ..          ..+..         .....++++   +.++++..+.|.+ +|......
T Consensus       260 ~~~g~lwva~~p~~~~~---~~----------~~~~~---------~~~s~v~ri~~~~~~~~~v~~~~~~-~G~~~~~~  316 (340)
T d1v04a_         260 PVTGDLWVGCHPNGMRI---FF----------YDAEN---------PPGSEVLRIQDILSEEPKVTVVYAE-NGTVLQGS  316 (340)
T ss_dssp             TTTCCEEEEEESCHHHH---HS----------CCTTS---------CCCEEEEEEECTTSSSCEEEEEEEE-CSSSSCSE
T ss_pred             cCCCEEEEEECCcccch---hh----------hcccC---------CCCceeEEEEeccCCCCeEEEEEeC-CCcEeece
Confidence            5 789999997632111   11          01110         112456666   3447888888887 56668888


Q ss_pred             eEEEEeCCEEEEeecCCCeEEEeeC
Q 018474          321 TSAAEFDGNLYLASLQSNFIGILPL  345 (355)
Q Consensus       321 ~~~~~~~g~L~v~~~~~~~i~~~~~  345 (355)
                      +.+++.+|+||+|++..++| .|+|
T Consensus       317 T~a~~~~g~L~iGs~~~~~l-~C~~  340 (340)
T d1v04a_         317 TVAAVYKGKLLIGTVFHKAL-YCDL  340 (340)
T ss_dssp             EEEEEETTEEEEEESSSCEE-EEEC
T ss_pred             EEEEEECCEEEEEeeeCCce-EecC
Confidence            99999999999999999887 6875

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.88  E-value=5.3e-21  Score=167.49  Aligned_cols=233  Identities=17%  Similarity=0.173  Sum_probs=169.6

Q ss_pred             CCCceEEEeeCCCeEEEEec--CCEEEEEEcCCCeeEEeecc-CCCcccCeEECCCCCEEEEeCCCcEEEEcCCC--eEE
Q 018474           52 NHPEDVSVVVSKGALYTATR--DGWVKYFILHNETLVNWKHI-DSQSLLGLTTTKDGGVILCDNEKGLLKVTEEG--VEA  126 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~--~g~i~~~~~~~g~~~~~~~~-~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~~g--~~~  126 (355)
                      .+|++|++| .+|.+|++..  .+++.+++..+......... ...|. ++++|++|+|||++...+++++...+  ...
T Consensus        14 ~~P~~vavd-~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~-gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~   91 (260)
T d1rwia_          14 LSPSGVAVD-SAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQ-GLAVDGAGTVYVTDFNNRVVTLAAGSNNQTV   91 (260)
T ss_dssp             CCEEEEEEC-TTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCC-CEEECTTCCEEEEETTTEEEEECTTCSCCEE
T ss_pred             CCCCEEEEc-CCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCce-EEEEcCCCCEEEeeeeeceeeeeeeccceee
Confidence            589999999 6788888643  57888887743333332222 35799 99999999999999888888777533  333


Q ss_pred             EcCC-cCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEe-eccccccccEEEeCCCCEE
Q 018474          127 IVPD-ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL-HEGFYFANGIALSKNEDFV  204 (355)
Q Consensus       127 ~~~~-~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~-~~~~~~pngi~~~~dg~~l  204 (355)
                      .... ...|++++++++|++|+++..                 ...++++++.+...... ..++..|++++++++++ +
T Consensus        92 ~~~~~~~~p~~iavd~~g~i~v~d~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-~  153 (260)
T d1rwia_          92 LPFDGLNYPEGLAVDTQGAVYVADRG-----------------NNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN-V  153 (260)
T ss_dssp             CCCCSCCSEEEEEECTTCCEEEEEGG-----------------GTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCC-E
T ss_pred             eeeeeeeecccccccccceeEeeccc-----------------cccccccccccceeeeeeecccCCcceeeecCCCC-E
Confidence            3222 378999999999999999854                 44688888766554443 34577899999999998 8


Q ss_pred             EEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcc
Q 018474          205 VVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLL  284 (355)
Q Consensus       205 ~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (355)
                      |+++...++|.+++.++..   ...+.....+.|.++++|++|+|||+....                            
T Consensus       154 ~v~~~~~~~i~~~d~~~~~---~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~----------------------------  202 (260)
T d1rwia_         154 YVTDTDNNRVVKLEAESNN---QVVLPFTDITAPWGIAVDEAGTVYVTEHNT----------------------------  202 (260)
T ss_dssp             EEEEGGGTEEEEECTTTCC---EEECCCSSCCSEEEEEECTTCCEEEEETTT----------------------------
T ss_pred             eeeccccccccccccccce---eeeeeccccCCCccceeeeeeeeeeeecCC----------------------------
Confidence            9999999999999876532   122222223569999999999999998652                            


Q ss_pred             cCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEe-CCEEEEeecCCCeEEEeeCCC
Q 018474          285 LPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-DGNLYLASLQSNFIGILPLDG  347 (355)
Q Consensus       285 ~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~~~~  347 (355)
                              +.|+++++ ++.....+.. .+  +..+++++.+ +|+||+++..+++|.++....
T Consensus       203 --------~~i~~~~~-~~~~~~~~~~-~~--~~~P~~i~~d~~g~l~vad~~~~rI~~i~~~~  254 (260)
T d1rwia_         203 --------NQVVKLLA-GSTTSTVLPF-TG--LNTPLAVAVDSDRTVYVADRGNDRVVKLTSLE  254 (260)
T ss_dssp             --------TEEEEECT-TCSCCEECCC-CS--CCCEEEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred             --------CEEEEEeC-CCCeEEEEcc-CC--CCCeEEEEEeCCCCEEEEECCCCEEEEEeCCC
Confidence                    46999999 7775555532 22  3467777776 489999999999999987543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.88  E-value=3.8e-20  Score=165.52  Aligned_cols=229  Identities=17%  Similarity=0.192  Sum_probs=169.0

Q ss_pred             eEecCCCCCCCceEEEeeCCCeEEEEec-CCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCC-cEEEEc-
Q 018474           44 TKLGEGCVNHPEDVSVVVSKGALYTATR-DGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEK-GLLKVT-  120 (355)
Q Consensus        44 ~~~~~~~~~~p~~i~~d~~~g~l~~~~~-~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~-gl~~~~-  120 (355)
                      ..++.+  ..||+++++ .+|+||++.. +++|+++++ +|+.+.+....+.|. +++++++|+||++++.. .+.+++ 
T Consensus        22 ~~~p~~--~~~e~iAv~-pdG~l~vt~~~~~~I~~i~p-~g~~~~~~~~~~~~~-gla~~~dG~l~v~~~~~~~~~~~~~   96 (302)
T d2p4oa1          22 TSFPVN--TFLENLASA-PDGTIFVTNHEVGEIVSITP-DGNQQIHATVEGKVS-GLAFTSNGDLVATGWNADSIPVVSL   96 (302)
T ss_dssp             EEECTT--CCEEEEEEC-TTSCEEEEETTTTEEEEECT-TCCEEEEEECSSEEE-EEEECTTSCEEEEEECTTSCEEEEE
T ss_pred             EECCCC--CCcCCEEEC-CCCCEEEEeCCCCEEEEEeC-CCCEEEEEcCCCCcc-eEEEcCCCCeEEEecCCceEEEEEe
Confidence            345554  469999999 5677887765 799999998 666666666677899 99999999999998664 355555 


Q ss_pred             -C-CC-eEEEcCC--cCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecc-------
Q 018474          121 -E-EG-VEAIVPD--ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG-------  188 (355)
Q Consensus       121 -~-~g-~~~~~~~--~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~-------  188 (355)
                       . ++ .+.+...  ...+|+++++++|++|++++.                 .+.++++|+.++........       
T Consensus        97 ~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~-----------------~~~i~~~~~~~~~~~~~~~~~~~~~~~  159 (302)
T d2p4oa1          97 VKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSY-----------------RGAIWLIDVVQPSGSIWLEHPMLARSN  159 (302)
T ss_dssp             ECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETT-----------------TTEEEEEETTTTEEEEEEECGGGSCSS
T ss_pred             cccccceeeccccCCccccceeEEccCCCEEeeccc-----------------cccceeeeccCCcceeEecCCccceee
Confidence             2 44 5444332  278999999999999999876                 56899999888776654321       


Q ss_pred             ----ccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCC-CcceeEecccCCCCcCceEECCCCCEEEEeecCCchhhHh
Q 018474          189 ----FYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDR-AGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRA  263 (355)
Q Consensus       189 ----~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~  263 (355)
                          ...+||++.+  ++.+|++++..++|+++++++.. ......+.  ....|+++++|++|++|++....       
T Consensus       160 ~~~~~~~~ngi~~~--~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~pdgia~d~dG~l~va~~~~-------  228 (302)
T d2p4oa1         160 SESVFPAANGLKRF--GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV--EQTNIDDFAFDVEGNLYGATHIY-------  228 (302)
T ss_dssp             TTCCSCSEEEEEEE--TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE--ESCCCSSEEEBTTCCEEEECBTT-------
T ss_pred             ccCccccccccccc--CCceeeecCCCCeEEecccccccccccccccc--CCCCCcceEECCCCCEEEEEcCC-------
Confidence                2346777765  56799999999999999986542 23333332  23459999999999999998652       


Q ss_pred             hhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEe-----CCEEEEeecCC
Q 018474          264 IQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-----DGNLYLASLQS  337 (355)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-----~g~L~v~~~~~  337 (355)
                                                   +.|.+++| +|+.........+  ...++++++.     .+.||+++..+
T Consensus       229 -----------------------------~~V~~i~p-~G~~~~~~~~~~~--~~~pt~vafg~~~~D~~~Lyvtt~~g  275 (302)
T d2p4oa1         229 -----------------------------NSVVRIAP-DRSTTIIAQAEQG--VIGSTAVAFGQTEGDCTAIYVVTNGG  275 (302)
T ss_dssp             -----------------------------CCEEEECT-TCCEEEEECGGGT--CTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             -----------------------------CcEEEECC-CCCEEEEEecCCC--CCCceEEEEcCCCCCCCEEEEECCCC
Confidence                                         46999999 9998777765554  3457777773     36799987653

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.81  E-value=2.3e-17  Score=145.45  Aligned_cols=240  Identities=13%  Similarity=0.208  Sum_probs=170.7

Q ss_pred             CCCCCCCceEEEeeCCCeEEEEec-CCEEEEEEcCCCeeE-EeeccC------CCcccCeEECC-CCCEEEEeCC--CcE
Q 018474           48 EGCVNHPEDVSVVVSKGALYTATR-DGWVKYFILHNETLV-NWKHID------SQSLLGLTTTK-DGGVILCDNE--KGL  116 (355)
Q Consensus        48 ~~~~~~p~~i~~d~~~g~l~~~~~-~g~i~~~~~~~g~~~-~~~~~~------~~p~~gl~~d~-~g~L~v~~~~--~gl  116 (355)
                      .|++..|.+|+++ .+|.+|++.. +++|.++++ +|++. .+....      ..|. +++.+. .+..+++...  ..+
T Consensus        19 ~g~f~~P~gvavd-~dg~i~VaD~~n~rI~v~d~-~G~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~i   95 (279)
T d1q7fa_          19 EGQFTEPSGVAVN-AQNDIIVADTNNHRIQIFDK-EGRFKFQFGECGKRDSQLLYPN-RVAVVRNSGDIIVTERSPTHQI   95 (279)
T ss_dssp             TTCBSCEEEEEEC-TTCCEEEEEGGGTEEEEECT-TSCEEEEECCBSSSTTCBSSEE-EEEEETTTTEEEEEECGGGCEE
T ss_pred             CCeECCccEEEEc-CCCCEEEEECCCCEEEEEeC-CCCEEEEecccCCCcccccccc-cccccccccccceeccCCcccc
Confidence            3568899999999 5778998864 789999998 56543 332211      2466 777654 4555554433  246


Q ss_pred             EEEcCCC--eEEEcCC-cCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee--ccccc
Q 018474          117 LKVTEEG--VEAIVPD-ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH--EGFYF  191 (355)
Q Consensus       117 ~~~~~~g--~~~~~~~-~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~--~~~~~  191 (355)
                      ..++++|  ...+... ...|++++++++|++|+++..                 ...+.+++++...+..+.  .....
T Consensus        96 ~~~~~~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~-----------------~~~~~~~~~~g~~~~~~g~~~~~~~  158 (279)
T d1q7fa_          96 QIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECK-----------------VMRVIIFDQNGNVLHKFGCSKHLEF  158 (279)
T ss_dssp             EEECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETT-----------------TTEEEEECTTSCEEEEEECTTTCSS
T ss_pred             ccccccccceeecCCCcccccceeccccCCcEEEEeec-----------------cceeeEeccCCceeecccccccccc
Confidence            6666677  4444332 378999999999999999865                 457888998765544442  34567


Q ss_pred             cccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecc-cCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhH
Q 018474          192 ANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIE-NLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREK  270 (355)
Q Consensus       192 pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~  270 (355)
                      |.+++++++++ +|+++...++|++|+.+|...   ..+.. .....|.++++|++|++||+....              
T Consensus       159 ~~~i~~d~~g~-i~v~d~~~~~V~~~d~~G~~~---~~~g~~g~~~~P~giavD~~G~i~Vad~~~--------------  220 (279)
T d1q7fa_         159 PNGVVVNDKQE-IFISDNRAHCVKVFNYEGQYL---RQIGGEGITNYPIGVGINSNGEILIADNHN--------------  220 (279)
T ss_dssp             EEEEEECSSSE-EEEEEGGGTEEEEEETTCCEE---EEESCTTTSCSEEEEEECTTCCEEEEECSS--------------
T ss_pred             cceeeecccee-EEeeeccccceeeeecCCcee---eeecccccccCCcccccccCCeEEEEECCC--------------
Confidence            89999999986 999999999999999876432   22321 223468999999999999998542              


Q ss_pred             HHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEe-CCEEEEeecCCCeEEEeeCCCCC
Q 018474          271 WELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-DGNLYLASLQSNFIGILPLDGPE  349 (355)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~~~~~~  349 (355)
                                           ...|.+|++ +|+.+..+..+..  ...++.++.+ +|+||+.+. +++|.+|+.-...
T Consensus       221 ---------------------~~~v~~f~~-~G~~~~~~~~~~~--~~~p~~vav~~dG~l~V~~~-n~~v~~fr~~~~~  275 (279)
T d1q7fa_         221 ---------------------NFNLTIFTQ-DGQLISALESKVK--HAQCFDVALMDDGSVVLASK-DYRLYIYRYVQLA  275 (279)
T ss_dssp             ---------------------SCEEEEECT-TSCEEEEEEESSC--CSCEEEEEEETTTEEEEEET-TTEEEEEECSCCC
T ss_pred             ---------------------CcEEEEECC-CCCEEEEEeCCCC--CCCEeEEEEeCCCcEEEEeC-CCeEEEEEeeeec
Confidence                                 136889999 9998888865332  2346666654 589999984 8999999987665


Q ss_pred             C
Q 018474          350 P  350 (355)
Q Consensus       350 ~  350 (355)
                      |
T Consensus       276 ~  276 (279)
T d1q7fa_         276 P  276 (279)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.77  E-value=3.9e-17  Score=142.47  Aligned_cols=185  Identities=14%  Similarity=0.160  Sum_probs=136.0

Q ss_pred             CCCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeec-cCCCcccCeEECCCCCEEEEeCCC-cEEEEcCCC--
Q 018474           48 EGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH-IDSQSLLGLTTTKDGGVILCDNEK-GLLKVTEEG--  123 (355)
Q Consensus        48 ~~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~-~~~~p~~gl~~d~~g~L~v~~~~~-gl~~~~~~g--  123 (355)
                      .+....|++++++ .++.+|++...+.+.++...+.....+.. ....|. ++++|++|++|+++... .+++++..+  
T Consensus        53 ~~~~~~p~gvav~-~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~~~~p~-~iavd~~g~i~v~d~~~~~~~~~~~~~~~  130 (260)
T d1rwia_          53 FNGLYQPQGLAVD-GAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPE-GLAVDTQGAVYVADRGNNRVVKLAAGSKT  130 (260)
T ss_dssp             CCSCCSCCCEEEC-TTCCEEEEETTTEEEEECTTCSCCEECCCCSCCSEE-EEEECTTCCEEEEEGGGTEEEEECTTCSS
T ss_pred             cCCccCceEEEEc-CCCCEEEeeeeeceeeeeeeccceeeeeeeeeeecc-cccccccceeEeeccccccccccccccce
Confidence            3446789999999 67789998887777776653332222222 235699 99999999999998653 467777544  


Q ss_pred             eEEEc-CCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee-ccccccccEEEeCCC
Q 018474          124 VEAIV-PDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFYFANGIALSKNE  201 (355)
Q Consensus       124 ~~~~~-~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~-~~~~~pngi~~~~dg  201 (355)
                      ..... .....|++++++++|++|+++..                 .+.++++|+++.....+. ..+..|+|++++++|
T Consensus       131 ~~~~~~~~~~~p~~i~~~~~g~~~v~~~~-----------------~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g  193 (260)
T d1rwia_         131 QTVLPFTGLNDPDGVAVDNSGNVYVTDTD-----------------NNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAG  193 (260)
T ss_dssp             CEECCCCSCCSCCEEEECTTCCEEEEEGG-----------------GTEEEEECTTTCCEEECCCSSCCSEEEEEECTTC
T ss_pred             eeeeeecccCCcceeeecCCCCEeeeccc-----------------cccccccccccceeeeeeccccCCCccceeeeee
Confidence            33332 22378999999999999999865                 458999998766555443 567889999999999


Q ss_pred             CEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474          202 DFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       202 ~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      + ||+++...++|.+|+.++..   ...+....-..|.+|++|++|+|||+...
T Consensus       194 ~-l~vsd~~~~~i~~~~~~~~~---~~~~~~~~~~~P~~i~~d~~g~l~vad~~  243 (260)
T d1rwia_         194 T-VYVTEHNTNQVVKLLAGSTT---STVLPFTGLNTPLAVAVDSDRTVYVADRG  243 (260)
T ss_dssp             C-EEEEETTTTEEEEECTTCSC---CEECCCCSCCCEEEEEECTTCCEEEEEGG
T ss_pred             e-eeeeecCCCEEEEEeCCCCe---EEEEccCCCCCeEEEEEeCCCCEEEEECC
Confidence            7 99999999999999875432   12222122246899999999999999865

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.67  E-value=2.8e-15  Score=134.27  Aligned_cols=181  Identities=13%  Similarity=0.127  Sum_probs=129.9

Q ss_pred             CCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeecc--C---CCcccCeEECCCCCEEEEeCC-------------
Q 018474           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI--D---SQSLLGLTTTKDGGVILCDNE-------------  113 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~--~---~~p~~gl~~d~~g~L~v~~~~-------------  113 (355)
                      ..|.+|+++++++.+|++...++|.+++++++........  +   ..|+ .+++|++|+|||++..             
T Consensus        71 g~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pn-dl~~d~~G~lyvtd~~~~~~~~~~~~~~~  149 (314)
T d1pjxa_          71 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCN-DCAFDYEGNLWITAPAGEVAPADYTRSMQ  149 (314)
T ss_dssp             CCEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCC-EEEECTTSCEEEEECBCBCTTSCCCBTTS
T ss_pred             CcceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCc-EEEECCCCCEEEecCccCcccccccceec
Confidence            3589999997677899998888899999954443332221  1   2477 8999999999999743             


Q ss_pred             ---CcEEEEcCCC-eEEEcCCcCCcccEEEccCC-----cEEEEeCCCCCCCccccccccccCCCCeEEEEeCC-CCeEE
Q 018474          114 ---KGLLKVTEEG-VEAIVPDASFTNDVIAASDG-----TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPK-LKETT  183 (355)
Q Consensus       114 ---~gl~~~~~~g-~~~~~~~~~~~~~l~~d~dG-----~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~-~~~~~  183 (355)
                         +.+++++++| ...+......||++++++++     .||++++.                 .+.|++|+.. .+...
T Consensus       150 ~~~G~v~~~~~dg~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~-----------------~~~i~~~d~~~~g~~~  212 (314)
T d1pjxa_         150 EKFGSIYCFTTDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETP-----------------TKKLWSYDIKGPAKIE  212 (314)
T ss_dssp             SSCEEEEEECTTSCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETT-----------------TTEEEEEEEEETTEEE
T ss_pred             cCCceEEEEeecCceeEeeCCcceeeeeEECCCCCcceeEEEEEeec-----------------ccceEEeeccCccccc
Confidence               2478888777 65555555789999998865     49999866                 5678888642 23332


Q ss_pred             ---Eee----ccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCC-CCcCceEECCCCC-EEEEee
Q 018474          184 ---VLH----EGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLP-GGPDNINLAPDGS-FWIGLI  254 (355)
Q Consensus       184 ---~~~----~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-g~p~~i~~d~~G~-lwv~~~  254 (355)
                         .+.    .....|.|++++++|+ ||+++...++|++|+.++.....   .+ ..+ ..|.++++.++|+ +||++.
T Consensus       213 ~~~~~~~~~~~~~~~pdGiavD~~Gn-lyVa~~~~g~I~~~dp~~g~~~~---~i-~~p~~~~t~~afg~d~~~lyVt~~  287 (314)
T d1pjxa_         213 NKKVWGHIPGTHEGGADGMDFDEDNN-LLVANWGSSHIEVFGPDGGQPKM---RI-RCPFEKPSNLHFKPQTKTIFVTEH  287 (314)
T ss_dssp             EEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEETTTEEEEECTTCBSCSE---EE-ECSSSCEEEEEECTTSSEEEEEET
T ss_pred             eeeEEEEccccccccceeeEEecCCc-EEEEEcCCCEEEEEeCCCCEEEE---EE-ECCCCCEEEEEEeCCCCEEEEEEC
Confidence               121    1234689999999998 99999989999999987543211   11 122 3578999999885 999875


Q ss_pred             c
Q 018474          255 K  255 (355)
Q Consensus       255 ~  255 (355)
                      .
T Consensus       288 ~  288 (314)
T d1pjxa_         288 E  288 (314)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=1.3e-13  Score=119.85  Aligned_cols=203  Identities=11%  Similarity=0.105  Sum_probs=149.4

Q ss_pred             CCCceEEEeeCCCeEEEEe-cCCEEEEEEcCCCeeEEeecc-CCCcccCeEECC-CCCEEEEeCCC-cEEEEcCCC--eE
Q 018474           52 NHPEDVSVVVSKGALYTAT-RDGWVKYFILHNETLVNWKHI-DSQSLLGLTTTK-DGGVILCDNEK-GLLKVTEEG--VE  125 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~-~~g~i~~~~~~~g~~~~~~~~-~~~p~~gl~~d~-~g~L~v~~~~~-gl~~~~~~g--~~  125 (355)
                      ..+.+|++|..++.+|.+. ..+.|++.+...+..+.+... ...|. +|++|. .++||+++... .+.+.+.+|  .+
T Consensus        36 ~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~-~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~  114 (263)
T d1npea_          36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPE-GIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR  114 (263)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEE-EEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             CcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEecccccc-EEEEeccCCeEEEeccCCCEEEEEecCCceEE
Confidence            4466788997788888765 468899999855544544433 35799 999995 67899999764 466777655  44


Q ss_pred             EEc-CCcCCcccEEEcc-CCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEe-eccccccccEEEeCCCC
Q 018474          126 AIV-PDASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL-HEGFYFANGIALSKNED  202 (355)
Q Consensus       126 ~~~-~~~~~~~~l~~d~-dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~-~~~~~~pngi~~~~dg~  202 (355)
                      .+. .....|.++++|| .|.+|+++..               .....+++.+.++...+.+ ..++..|+|+++++.++
T Consensus       115 ~l~~~~l~~p~~l~vdp~~g~ly~t~~~---------------~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~  179 (263)
T d1npea_         115 VLFDTGLVNPRGIVTDPVRGNLYWTDWN---------------RDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSS  179 (263)
T ss_dssp             EEECSSCSSEEEEEEETTTTEEEEEECC---------------SSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTT
T ss_pred             EEecccccCCcEEEEecccCcEEEeecC---------------CCCcEEEEecCCCCCceeeeeecccccceEEEeecCc
Confidence            443 3347899999998 5789999865               1234799988876654444 46778999999999999


Q ss_pred             EEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhh
Q 018474          203 FVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLIS  282 (355)
Q Consensus       203 ~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (355)
                      .|||++...+.|.+++++|.   ..+.+...++ .|.+++++ ++++|+++...                          
T Consensus       180 ~lYw~d~~~~~I~~~~~~g~---~~~~v~~~~~-~P~~lav~-~~~lYwtd~~~--------------------------  228 (263)
T d1npea_         180 QLCWVDAGTHRAECLNPAQP---GRRKVLEGLQ-YPFAVTSY-GKNLYYTDWKT--------------------------  228 (263)
T ss_dssp             EEEEEETTTTEEEEEETTEE---EEEEEEECCC-SEEEEEEE-TTEEEEEETTT--------------------------
T ss_pred             EEEEEeCCCCEEEEEECCCC---CeEEEECCCC-CcEEEEEE-CCEEEEEECCC--------------------------
Confidence            99999999999999998763   2333443443 58899998 47899998652                          


Q ss_pred             cccCCCCCCceEEEEEeCCCCeEEEEEEC
Q 018474          283 LLLPMGSDAGARVVKVDGNDGKIIRDFND  311 (355)
Q Consensus       283 ~~~~~~~~~~~~v~~~~~~~g~~~~~~~~  311 (355)
                                ..|.++|...|+....+..
T Consensus       229 ----------~~I~~~~~~~g~~~~~~~~  247 (263)
T d1npea_         229 ----------NSVIAMDLAISKEMDTFHP  247 (263)
T ss_dssp             ----------TEEEEEETTTTEEEEEECC
T ss_pred             ----------CEEEEEECCCCccceEECC
Confidence                      4699999966887766643

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.60  E-value=2e-13  Score=122.19  Aligned_cols=195  Identities=16%  Similarity=0.174  Sum_probs=134.1

Q ss_pred             cccCeEECCCCCEEEEeCCC-cEEEEcCCC---eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCC
Q 018474           95 SLLGLTTTKDGGVILCDNEK-GLLKVTEEG---VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYG  170 (355)
Q Consensus        95 p~~gl~~d~~g~L~v~~~~~-gl~~~~~~g---~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g  170 (355)
                      .. |+++|++|+||+++... .|+++++++   .+........|+++++++||++|+++...             ....+
T Consensus        42 lE-G~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~-------------~~~~~  107 (319)
T d2dg1a1          42 LE-GLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGD-------------FKSTG  107 (319)
T ss_dssp             EE-EEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTT-------------SSSCC
T ss_pred             cE-eCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCC-------------Cccce
Confidence            45 99999999999999664 588999644   33344444689999999999999997541             12256


Q ss_pred             eEEEEeCCCCeEEEeecc---ccccccEEEeCCCCEEEEEeCC------CCeEEEEEeCCCCCcceeEecccCCCCcCce
Q 018474          171 QLRKYDPKLKETTVLHEG---FYFANGIALSKNEDFVVVCESW------KFRCRRYWLKGDRAGILDAFIENLPGGPDNI  241 (355)
Q Consensus       171 ~l~~~dp~~~~~~~~~~~---~~~pngi~~~~dg~~l~v~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i  241 (355)
                      .++.+++.++........   ...||.++++++|+ +|+++..      .+.+++++.++..   .+.+.+.. ..|+|+
T Consensus       108 ~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg~~---~~~~~~~~-~~pnGi  182 (319)
T d2dg1a1         108 GIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRT---VTPIIQNI-SVANGI  182 (319)
T ss_dssp             EEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCC---EEEEEEEE-SSEEEE
T ss_pred             eEEEEcCCCceeeeeccCCCcccCCcceeEEeccc-eeecccccccccCcceeEEEecccce---eEEEeecc-ceeeee
Confidence            789999888776655432   45689999999998 9998754      2458888765532   23333333 358999


Q ss_pred             EECCCCC-EEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEe--CCCCeEEEE-----EECCC
Q 018474          242 NLAPDGS-FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVD--GNDGKIIRD-----FNDPD  313 (355)
Q Consensus       242 ~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~g~~~~~-----~~~~~  313 (355)
                      +++++|+ +|++....                                    +.|.+|+  . +|.....     .....
T Consensus       183 a~s~dg~~lyvad~~~------------------------------------~~I~~~d~~~-~g~~~~~~~~~~~~~~~  225 (319)
T d2dg1a1         183 ALSTDEKVLWVTETTA------------------------------------NRLHRIALED-DGVTIQPFGATIPYYFT  225 (319)
T ss_dssp             EECTTSSEEEEEEGGG------------------------------------TEEEEEEECT-TSSSEEEEEEEEEEECC
T ss_pred             eeccccceEEEecccC------------------------------------CceEEEEEcC-CCceeccccceeeeccC
Confidence            9999996 89998652                                    3576664  3 4432211     11111


Q ss_pred             CCcccceeEEEEe-CCEEEEeecCCCeEEEeeCCC
Q 018474          314 ATYISFVTSAAEF-DGNLYLASLQSNFIGILPLDG  347 (355)
Q Consensus       314 g~~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~~~~  347 (355)
                      +  ...+.+++.+ +|+||++...++.|.++...+
T Consensus       226 ~--~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~G  258 (319)
T d2dg1a1         226 G--HEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRG  258 (319)
T ss_dssp             S--SSEEEEEEEBTTCCEEEEEETTTEEEEECTTS
T ss_pred             C--ccceeeeeEcCCCCEEEEEcCCCEEEEECCCC
Confidence            1  1234556655 599999999999999988554

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2.1e-12  Score=112.36  Aligned_cols=222  Identities=14%  Similarity=0.125  Sum_probs=156.9

Q ss_pred             eEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECC-CCCEEEEeCCCc-EEEEcCCC------eEE-EcCCcCCcc
Q 018474           65 ALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTK-DGGVILCDNEKG-LLKVTEEG------VEA-IVPDASFTN  135 (355)
Q Consensus        65 ~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~-~g~L~v~~~~~g-l~~~~~~g------~~~-~~~~~~~~~  135 (355)
                      .|+++.. ..|.+++..+.....+......+. +|.+|. +++||+++...+ |++.+.++      .+. +......|.
T Consensus         3 fLl~s~~-~~I~~~~l~~~~~~~~~~~~~~~~-~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~   80 (266)
T d1ijqa1           3 YLFFTNR-HEVRKMTLDRSEYTSLIPNLRNVV-ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD   80 (266)
T ss_dssp             EEEEECB-SSEEEEETTSCCCEEEECSCSSEE-EEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred             EEEEECC-CeEEEEECCCCcceeeeCCCCceE-EEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcc
Confidence            3455544 459999987666666555556678 899984 567999997654 66665222      233 334447899


Q ss_pred             cEEEcc-CCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEE-eeccccccccEEEeCCCCEEEEEeCCC-C
Q 018474          136 DVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTV-LHEGFYFANGIALSKNEDFVVVCESWK-F  212 (355)
Q Consensus       136 ~l~~d~-dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~-~~~~~~~pngi~~~~dg~~l~v~~~~~-~  212 (355)
                      +|++|. .++||+++..                 .+.+.++++++...+. ...+...|.+++++|....+||++.+. .
T Consensus        81 glAvD~~~~~lY~~d~~-----------------~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~  143 (266)
T d1ijqa1          81 GLAVDWIHSNIYWTDSV-----------------LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPA  143 (266)
T ss_dssp             EEEEETTTTEEEEEETT-----------------TTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSC
T ss_pred             eEEEeeccceEEEEecC-----------------CCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCc
Confidence            999997 5699999876                 4578888887665544 345677899999999888899999754 5


Q ss_pred             eEEEEEeCCCCCcceeEecccCCCCcCceEECCCC-CEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCC
Q 018474          213 RCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDG-SFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDA  291 (355)
Q Consensus       213 ~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G-~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (355)
                      +|.|.+++|..   .+.+....-..|.++++|..+ +||++....                                   
T Consensus       144 ~I~r~~~dGs~---~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~-----------------------------------  185 (266)
T d1ijqa1         144 KIKKGGLNGVD---IYSLVTENIQWPNGITLDLLSGRLYWVDSKL-----------------------------------  185 (266)
T ss_dssp             EEEEEETTSCC---EEEEECSSCSCEEEEEEETTTTEEEEEETTT-----------------------------------
T ss_pred             ceeEeccCCCc---eecccccccceeeEEEeeccccEEEEecCCc-----------------------------------
Confidence            89999987742   333433223569999999754 688876441                                   


Q ss_pred             ceEEEEEeCCCCeEEE-EEECCCCCcccceeEEEEeCCEEEEeecCCCeEEEeeCCC
Q 018474          292 GARVVKVDGNDGKIIR-DFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLDG  347 (355)
Q Consensus       292 ~~~v~~~~~~~g~~~~-~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~~  347 (355)
                       +.|.+++. +|.... ......+  ...+.++...+++||+++..++.|.+++..+
T Consensus       186 -~~I~~~~~-dG~~~~~~~~~~~~--~~~p~~lav~~~~ly~td~~~~~I~~~~~~~  238 (266)
T d1ijqa1         186 -HSISSIDV-NGGNRKTILEDEKR--LAHPFSLAVFEDKVFWTDIINEAIFSANRLT  238 (266)
T ss_dssp             -TEEEEEET-TSCSCEEEEECTTT--TSSEEEEEEETTEEEEEETTTTEEEEEETTT
T ss_pred             -CEEEEEEC-CCCCEEEEEeCCCc--ccccEEEEEECCEEEEEECCCCeEEEEECCC
Confidence             46899998 775433 3444333  3456678888999999999999999998654

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.7e-12  Score=113.03  Aligned_cols=184  Identities=14%  Similarity=0.133  Sum_probs=132.2

Q ss_pred             CCCCceEEEeeCCCeEEEEe-cCCEEEEEEcCCC----eeEE-eeccCCCcccCeEECC-CCCEEEEeCCCc-EEEEcCC
Q 018474           51 VNHPEDVSVVVSKGALYTAT-RDGWVKYFILHNE----TLVN-WKHIDSQSLLGLTTTK-DGGVILCDNEKG-LLKVTEE  122 (355)
Q Consensus        51 ~~~p~~i~~d~~~g~l~~~~-~~g~i~~~~~~~g----~~~~-~~~~~~~p~~gl~~d~-~g~L~v~~~~~g-l~~~~~~  122 (355)
                      ...|.+|.+|..++.+|.+. ..+.|++.+....    ..+. .......|. +|++|. .++||+++...+ +.+.+.+
T Consensus        29 ~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~-glAvD~~~~~lY~~d~~~~~I~v~~~~  107 (266)
T d1ijqa1          29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD-GLAVDWIHSNIYWTDSVLGTVSVADTK  107 (266)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC-EEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcc-eEEEeeccceEEEEecCCCEEEeEecC
Confidence            57888999998788888765 4678988876321    1222 223335688 999995 668999997755 5566656


Q ss_pred             C--eEE-EcCCcCCcccEEEcc-CCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee-ccccccccEEE
Q 018474          123 G--VEA-IVPDASFTNDVIAAS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EGFYFANGIAL  197 (355)
Q Consensus       123 g--~~~-~~~~~~~~~~l~~d~-dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~-~~~~~pngi~~  197 (355)
                      |  .+. +......|.++++|+ +|.+|+++...                .+.+++.+.++...+.+. .++..|+|+++
T Consensus       108 g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~----------------~~~I~r~~~dGs~~~~l~~~~~~~p~gl~i  171 (266)
T d1ijqa1         108 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT----------------PAKIKKGGLNGVDIYSLVTENIQWPNGITL  171 (266)
T ss_dssp             SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSS----------------SCEEEEEETTSCCEEEEECSSCSCEEEEEE
T ss_pred             CceEEEEEcCCCCCcceEEEEcccCeEEEeccCC----------------CcceeEeccCCCceecccccccceeeEEEe
Confidence            6  333 333347899999997 68999998541                357999998776666554 56788999999


Q ss_pred             eCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccC--CCCcCceEECCCCCEEEEeec
Q 018474          198 SKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENL--PGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       198 ~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      ++.++.|||++...+.|.+++++|...   +.+....  ...|.+++++ ++++|+++..
T Consensus       172 D~~~~~lYw~d~~~~~I~~~~~dG~~~---~~~~~~~~~~~~p~~lav~-~~~ly~td~~  227 (266)
T d1ijqa1         172 DLLSGRLYWVDSKLHSISSIDVNGGNR---KTILEDEKRLAHPFSLAVF-EDKVFWTDII  227 (266)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSCSC---EEEEECTTTTSSEEEEEEE-TTEEEEEETT
T ss_pred             eccccEEEEecCCcCEEEEEECCCCCE---EEEEeCCCcccccEEEEEE-CCEEEEEECC
Confidence            999999999999999999999987432   2222221  2357889998 4789998855

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.54  E-value=6.2e-13  Score=116.55  Aligned_cols=184  Identities=13%  Similarity=0.216  Sum_probs=130.9

Q ss_pred             CCCCCCceEEEeeCCCeEEEEe--cCCEEEEEEcCCCeeE-Eeec-cCCCcccCeEECCCCCEEEEeCCCc-EEEEcCCC
Q 018474           49 GCVNHPEDVSVVVSKGALYTAT--RDGWVKYFILHNETLV-NWKH-IDSQSLLGLTTTKDGGVILCDNEKG-LLKVTEEG  123 (355)
Q Consensus        49 ~~~~~p~~i~~d~~~g~l~~~~--~~g~i~~~~~~~g~~~-~~~~-~~~~p~~gl~~d~~g~L~v~~~~~g-l~~~~~~g  123 (355)
                      +....|.+++.+.+.+..++..  .++.|.+++. +|+.. .+.. ....|. ++++|++|++|+++...+ +.+++++|
T Consensus        67 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~p~-~~avd~~G~i~v~~~~~~~~~~~~~~g  144 (279)
T d1q7fa_          67 SQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-YGQFVRKFGATILQHPR-GVTVDNKGRIIVVECKVMRVIIFDQNG  144 (279)
T ss_dssp             TCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-TSCEEEEECTTTCSCEE-EEEECTTSCEEEEETTTTEEEEECTTS
T ss_pred             ccccccccccccccccccceeccCCccccccccc-cccceeecCCCcccccc-eeccccCCcEEEEeeccceeeEeccCC
Confidence            3456788898875556655543  3567888877 55543 3322 234688 999999999999987644 77777777


Q ss_pred             --eEEEcCC--cCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeec--cccccccEEE
Q 018474          124 --VEAIVPD--ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE--GFYFANGIAL  197 (355)
Q Consensus       124 --~~~~~~~--~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~--~~~~pngi~~  197 (355)
                        +..+...  ...+.+++++++|++|+++..                 .+.+++||+++..+..+..  .+..|.||++
T Consensus       145 ~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~-----------------~~~V~~~d~~G~~~~~~g~~g~~~~P~giav  207 (279)
T d1q7fa_         145 NVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR-----------------AHCVKVFNYEGQYLRQIGGEGITNYPIGVGI  207 (279)
T ss_dssp             CEEEEEECTTTCSSEEEEEECSSSEEEEEEGG-----------------GTEEEEEETTCCEEEEESCTTTSCSEEEEEE
T ss_pred             ceeecccccccccccceeeeccceeEEeeecc-----------------ccceeeeecCCceeeeecccccccCCccccc
Confidence              5555332  378999999999999999865                 4579999997665555432  3567999999


Q ss_pred             eCCCCEEEEEeCCC-CeEEEEEeCCCCCcceeEecc-cCCCCcCceEECCCCCEEEEeec
Q 018474          198 SKNEDFVVVCESWK-FRCRRYWLKGDRAGILDAFIE-NLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       198 ~~dg~~l~v~~~~~-~~i~~~~~~~~~~~~~~~~~~-~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      +++|+ +|+++... .+|.+|+.+|.-..   .+.. .....|.+++++++|+|+|+...
T Consensus       208 D~~G~-i~Vad~~~~~~v~~f~~~G~~~~---~~~~~~~~~~p~~vav~~dG~l~V~~~n  263 (279)
T d1q7fa_         208 NSNGE-ILIADNHNNFNLTIFTQDGQLIS---ALESKVKHAQCFDVALMDDGSVVLASKD  263 (279)
T ss_dssp             CTTCC-EEEEECSSSCEEEEECTTSCEEE---EEEESSCCSCEEEEEEETTTEEEEEETT
T ss_pred             ccCCe-EEEEECCCCcEEEEECCCCCEEE---EEeCCCCCCCEeEEEEeCCCcEEEEeCC
Confidence            99998 99999754 47888886653222   2221 22346899999999999998743

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.52  E-value=4.7e-12  Score=109.89  Aligned_cols=214  Identities=13%  Similarity=0.136  Sum_probs=150.1

Q ss_pred             CCEEEEEEcCCCeeE------EeeccCCCcccCeEEC-CCCCEEEEeCCCc-EEEEcCCC--eEEEc-CCcCCcccEEEc
Q 018474           72 DGWVKYFILHNETLV------NWKHIDSQSLLGLTTT-KDGGVILCDNEKG-LLKVTEEG--VEAIV-PDASFTNDVIAA  140 (355)
Q Consensus        72 ~g~i~~~~~~~g~~~------~~~~~~~~p~~gl~~d-~~g~L~v~~~~~g-l~~~~~~g--~~~~~-~~~~~~~~l~~d  140 (355)
                      .+.|.++..+.....      .+......+. +|++| .+++||+++...+ |++.+.+|  .+.+. .....|.++++|
T Consensus         9 ~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~-~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD   87 (263)
T d1npea_           9 TGKIERLPLERNTMKKTEAKAFLHIPAKVII-GLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALD   87 (263)
T ss_dssp             EEEEEEEEESSSCBCGGGCEEEEEEEEEEEE-EEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEE
T ss_pred             CCeEEEEECCCccccccccccccccCCCcEE-EEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEe
Confidence            467988887433221      1112223466 89999 5567999997755 77777544  44443 344689999999


Q ss_pred             c-CCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEe-eccccccccEEEeCCCCEEEEEeCCC--CeEEE
Q 018474          141 S-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL-HEGFYFANGIALSKNEDFVVVCESWK--FRCRR  216 (355)
Q Consensus       141 ~-dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~-~~~~~~pngi~~~~dg~~l~v~~~~~--~~i~~  216 (355)
                      . .++||+++..                 .+.+.+.++++...+.+ ..++..|.+++++|....+||++.+.  .+|++
T Consensus        88 ~~~~~lY~~d~~-----------------~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r  150 (263)
T d1npea_          88 HLGRTIFWTDSQ-----------------LDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIET  150 (263)
T ss_dssp             TTTTEEEEEETT-----------------TTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEE
T ss_pred             ccCCeEEEeccC-----------------CCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEE
Confidence            6 6799999865                 45788888876654444 45577899999999999999998764  36999


Q ss_pred             EEeCCCCCcceeEecccCCCCcCceEECCCC-CEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEE
Q 018474          217 YWLKGDRAGILDAFIENLPGGPDNINLAPDG-SFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARV  295 (355)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G-~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  295 (355)
                      .+++|...   +.+....-..|.++++|..+ +||+++...                                    +.|
T Consensus       151 ~~~dG~~~---~~i~~~~~~~P~glaiD~~~~~lYw~d~~~------------------------------------~~I  191 (263)
T d1npea_         151 SHMDGTNR---RILAQDNLGLPNGLTFDAFSSQLCWVDAGT------------------------------------HRA  191 (263)
T ss_dssp             EETTSCCC---EEEECTTCSCEEEEEEETTTTEEEEEETTT------------------------------------TEE
T ss_pred             ecCCCCCc---eeeeeecccccceEEEeecCcEEEEEeCCC------------------------------------CEE
Confidence            99877432   22332222468999999654 688876441                                    468


Q ss_pred             EEEeCCCCeEEEEEECCCCCcccceeEEEEeCCEEEEeecCCCeEEEeeCCC
Q 018474          296 VKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLDG  347 (355)
Q Consensus       296 ~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~~  347 (355)
                      .+++. +|...+.+..  +.  ..+.++...+++||+++..++.|.+++..+
T Consensus       192 ~~~~~-~g~~~~~v~~--~~--~~P~~lav~~~~lYwtd~~~~~I~~~~~~~  238 (263)
T d1npea_         192 ECLNP-AQPGRRKVLE--GL--QYPFAVTSYGKNLYYTDWKTNSVIAMDLAI  238 (263)
T ss_dssp             EEEET-TEEEEEEEEE--CC--CSEEEEEEETTEEEEEETTTTEEEEEETTT
T ss_pred             EEEEC-CCCCeEEEEC--CC--CCcEEEEEECCEEEEEECCCCEEEEEECCC
Confidence            99999 8876554432  22  245677788999999999999999999864

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.51  E-value=6.3e-11  Score=102.84  Aligned_cols=241  Identities=14%  Similarity=0.143  Sum_probs=165.9

Q ss_pred             eEecCCCCCCCceEEEeeCCCeEEEEe-cCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCCCcE-EEEc
Q 018474           44 TKLGEGCVNHPEDVSVVVSKGALYTAT-RDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEKGL-LKVT  120 (355)
Q Consensus        44 ~~~~~~~~~~p~~i~~d~~~g~l~~~~-~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~~gl-~~~~  120 (355)
                      ..+..+  ..|.+++++|++..||++. .++.|..+|..+++..........|. +++++++|. ++++...... ..++
T Consensus        26 ~~i~~g--~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  102 (301)
T d1l0qa2          26 ATIPVG--SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQ-GVAVSPDGKQVYVTNMASSTLSVID  102 (301)
T ss_dssp             EEEECS--SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEE-EEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             EEEECC--CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccccc-ccccccccccccccccccceeeecc
Confidence            345544  5799999997777788765 47899999998887665445556788 999998887 5555555444 4444


Q ss_pred             C-CC--eEEEcCCcCCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEE
Q 018474          121 E-EG--VEAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIA  196 (355)
Q Consensus       121 ~-~g--~~~~~~~~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~  196 (355)
                      . ++  ...+.. ...+..++++++|. ++++...                 ...+..++..+++..........|..++
T Consensus       103 ~~~~~~~~~~~~-~~~~~~~~~~~dg~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (301)
T d1l0qa2         103 TTSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNG-----------------DKTVSVINTVTKAVINTVSVGRSPKGIA  164 (301)
T ss_dssp             TTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETT-----------------TTEEEEEETTTTEEEEEEECCSSEEEEE
T ss_pred             cccceeeeeccc-cccceEEEeecCCCeeeeeecc-----------------ccceeeeeccccceeeecccCCCceEEE
Confidence            3 45  333333 25788899999995 4455433                 3467778887777665555566788999


Q ss_pred             EeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCC-EEEEeecCCchhhHhhhcchhHHHHHH
Q 018474          197 LSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGS-FWIGLIKMNQTGVRAIQKCREKWELLD  275 (355)
Q Consensus       197 ~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~  275 (355)
                      +++|++.+|++......+..++......  ....  .....|.+++++.+|+ +|++...                    
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~g~~~~v~~~~--------------------  220 (301)
T d1l0qa2         165 VTPDGTKVYVANFDSMSISVIDTVTNSV--IDTV--KVEAAPSGIAVNPEGTKAYVTNVD--------------------  220 (301)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTEE--EEEE--ECSSEEEEEEECTTSSEEEEEEEC--------------------
T ss_pred             eeccccceeeecccccccccccccceee--eecc--cccCCcceeecccccccccccccc--------------------
Confidence            9999999999988777776666533211  1111  2334578899999996 5566543                    


Q ss_pred             hccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEe--CCEEEEeecCCCeEEEeeCCCC
Q 018474          276 AYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF--DGNLYLASLQSNFIGILPLDGP  348 (355)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~--~g~L~v~~~~~~~i~~~~~~~~  348 (355)
                                    ...+.|..+|.++++....+....     .+..+...  +.+||++....+.|.++++.+-
T Consensus       221 --------------~~~~~v~v~D~~t~~~~~~~~~~~-----~~~~va~spdg~~l~va~~~~~~i~v~D~~t~  276 (301)
T d1l0qa2         221 --------------KYFNTVSMIDTGTNKITARIPVGP-----DPAGIAVTPDGKKVYVALSFCNTVSVIDTATN  276 (301)
T ss_dssp             --------------SSCCEEEEEETTTTEEEEEEECCS-----SEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             --------------ceeeeeeeeecCCCeEEEEEcCCC-----CEEEEEEeCCCCEEEEEECCCCeEEEEECCCC
Confidence                          222468889987888877775522     34556654  3679999988999999987654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.43  E-value=3.9e-12  Score=112.41  Aligned_cols=177  Identities=15%  Similarity=0.129  Sum_probs=127.2

Q ss_pred             CCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeecc-----CCCcccCeEECCCCCEEEEeCC------C-cEEEE
Q 018474           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI-----DSQSLLGLTTTKDGGVILCDNE------K-GLLKV  119 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~-----~~~p~~gl~~d~~g~L~v~~~~------~-gl~~~  119 (355)
                      ..|.+++.+ ++|.+|+++.+ +|+++|+.+++.+.+...     ..+++ .+.+|++|++|+++..      . .++++
T Consensus        59 ~~~~~i~~~-~dg~l~va~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~n-d~~vd~~G~iw~~~~~~~~~~~~g~l~~~  135 (295)
T d2ghsa1          59 FMGSALAKI-SDSKQLIASDD-GLFLRDTATGVLTLHAELESDLPGNRSN-DGRMHPSGALWIGTMGRKAETGAGSIYHV  135 (295)
T ss_dssp             SCEEEEEEE-ETTEEEEEETT-EEEEEETTTCCEEEEECSSTTCTTEEEE-EEEECTTSCEEEEEEETTCCTTCEEEEEE
T ss_pred             CCcEEEEEe-cCCCEEEEEeC-ccEEeecccceeeEEeeeecCCCcccce-eeEECCCCCEEEEeccccccccceeEeee
Confidence            467889998 67889998865 599999999988877542     23577 8899999999999742      1 25555


Q ss_pred             cCCC-eEEEcCCcCCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeC--CCC----eEEEee---cc
Q 018474          120 TEEG-VEAIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDP--KLK----ETTVLH---EG  188 (355)
Q Consensus       120 ~~~g-~~~~~~~~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp--~~~----~~~~~~---~~  188 (355)
                      . +| ++.+......+|++++++++ .+|++++.                 .+.+++|+.  +.+    +...+.   ..
T Consensus       136 ~-~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~-----------------~~~I~~~~~d~~~~~~~~~~~~~~~~~~~  197 (295)
T d2ghsa1         136 A-KGKVTKLFADISIPNSICFSPDGTTGYFVDTK-----------------VNRLMRVPLDARTGLPTGKAEVFIDSTGI  197 (295)
T ss_dssp             E-TTEEEEEEEEESSEEEEEECTTSCEEEEEETT-----------------TCEEEEEEBCTTTCCBSSCCEEEEECTTS
T ss_pred             c-CCcEEEEeeccCCcceeeecCCCceEEEeecc-----------------cceeeEeeecccccccccceEEEeccCcc
Confidence            4 45 55555555789999999988 69999876                 457777753  222    122222   23


Q ss_pred             ccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCC-CCcCceEEC-CCC-CEEEEeec
Q 018474          189 FYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLP-GGPDNINLA-PDG-SFWIGLIK  255 (355)
Q Consensus       189 ~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-g~p~~i~~d-~~G-~lwv~~~~  255 (355)
                      ...|.|++++++|+ +|++....++|.+|+.+|......     .+| ..|.++++. +++ .|||++..
T Consensus       198 ~g~pdG~~vD~~Gn-lWva~~~~g~V~~~dp~G~~~~~i-----~lP~~~~T~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         198 KGGMDGSVCDAEGH-IWNARWGEGAVDRYDTDGNHIARY-----EVPGKQTTCPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             SSEEEEEEECTTSC-EEEEEETTTEEEEECTTCCEEEEE-----ECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             cccccceEEcCCCC-EEeeeeCCCceEEecCCCcEeeEe-----cCCCCceEEEEEeCCCCCEEEEEECC
Confidence            45699999999998 999998889999999876533222     233 257888885 344 59998765

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.40  E-value=1.6e-11  Score=108.65  Aligned_cols=162  Identities=15%  Similarity=0.156  Sum_probs=117.6

Q ss_pred             CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCC
Q 018474          132 SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWK  211 (355)
Q Consensus       132 ~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~  211 (355)
                      .++.++++++||+||+++..                 .+.|++++|+ ++.+.+......|+++++++||+ +|+++...
T Consensus        28 ~~~e~iAv~pdG~l~vt~~~-----------------~~~I~~i~p~-g~~~~~~~~~~~~~gla~~~dG~-l~v~~~~~   88 (302)
T d2p4oa1          28 TFLENLASAPDGTIFVTNHE-----------------VGEIVSITPD-GNQQIHATVEGKVSGLAFTSNGD-LVATGWNA   88 (302)
T ss_dssp             CCEEEEEECTTSCEEEEETT-----------------TTEEEEECTT-CCEEEEEECSSEEEEEEECTTSC-EEEEEECT
T ss_pred             CCcCCEEECCCCCEEEEeCC-----------------CCEEEEEeCC-CCEEEEEcCCCCcceEEEcCCCC-eEEEecCC
Confidence            57889999999999999876                 5689999996 45666666667899999999998 99998888


Q ss_pred             CeEEEEEeCCCCCcceeEeccc-CCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCC
Q 018474          212 FRCRRYWLKGDRAGILDAFIEN-LPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSD  290 (355)
Q Consensus       212 ~~i~~~~~~~~~~~~~~~~~~~-~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (355)
                      +.+.+++..+.. +....+.+. ....+.+++++++|++|++....                                  
T Consensus        89 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~----------------------------------  133 (302)
T d2p4oa1          89 DSIPVVSLVKSD-GTVETLLTLPDAIFLNGITPLSDTQYLTADSYR----------------------------------  133 (302)
T ss_dssp             TSCEEEEEECTT-SCEEEEEECTTCSCEEEEEESSSSEEEEEETTT----------------------------------
T ss_pred             ceEEEEEecccc-cceeeccccCCccccceeEEccCCCEEeecccc----------------------------------
Confidence            888888875432 222333321 22468889999999999997542                                  


Q ss_pred             CceEEEEEeCCCCeEEEEEECCCC------CcccceeEEEEeCCEEEEeecCCCeEEEeeCCCCC
Q 018474          291 AGARVVKVDGNDGKIIRDFNDPDA------TYISFVTSAAEFDGNLYLASLQSNFIGILPLDGPE  349 (355)
Q Consensus       291 ~~~~v~~~~~~~g~~~~~~~~~~g------~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~~~~  349 (355)
                        +.++++++..+.......++..      ........+..+++.||++....+.|.+++.....
T Consensus       134 --~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~~~~i~~~~~~~~~  196 (302)
T d2p4oa1         134 --GAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTD  196 (302)
T ss_dssp             --TEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEBCTTS
T ss_pred             --ccceeeeccCCcceeEecCCccceeeccCcccccccccccCCceeeecCCCCeEEeccccccc
Confidence              4689999834443333333211      11223445667889999999999999999987643

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.27  E-value=4.6e-09  Score=95.03  Aligned_cols=262  Identities=11%  Similarity=0.025  Sum_probs=148.2

Q ss_pred             CcCccCceEecCCCCCCCceEEEeeCCCeEEEEecCCEE--EEEEcCCCeeEEe-eccCCCcccCeEECCCCC-EEEEeC
Q 018474           37 SSSMKGLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWV--KYFILHNETLVNW-KHIDSQSLLGLTTTKDGG-VILCDN  112 (355)
Q Consensus        37 ~~~l~~~~~~~~~~~~~p~~i~~d~~~g~l~~~~~~g~i--~~~~~~~g~~~~~-~~~~~~p~~gl~~d~~g~-L~v~~~  112 (355)
                      +..|+..+.........|..|+++++++.||++..+ .+  +.++.+++..... ...+..|. .++++++|+ +|++..
T Consensus        25 ~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~p~-~v~~~~~~~~~~v~~a  102 (365)
T d1jofa_          25 KLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPR-ANDADTNTRAIFLLAA  102 (365)
T ss_dssp             TTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGG-GGCTTSCCEEEEEEEC
T ss_pred             CCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeCC-cEEEEEEeCCCCeEEEeeecCCCCcE-EEEECCCCCEEEEEEe
Confidence            334443333322223557889999888889988654 44  4555544433222 23456788 899998886 577553


Q ss_pred             C--C-cEEEEc--CCC--eEEE--c--------------CCcCCcccEEEccCCc-EEEEeCCCCCCCccccccccccCC
Q 018474          113 E--K-GLLKVT--EEG--VEAI--V--------------PDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKP  168 (355)
Q Consensus       113 ~--~-gl~~~~--~~g--~~~~--~--------------~~~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~  168 (355)
                      .  . .++.+.  .++  ....  .              .....+.+++++|||+ +|+++..                 
T Consensus       103 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g-----------------  165 (365)
T d1jofa_         103 KQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLT-----------------  165 (365)
T ss_dssp             SSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT-----------------
T ss_pred             cCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCC-----------------
Confidence            2  1 233221  222  1111  0              0115688999999995 8888765                 


Q ss_pred             CCeEEEEe-CCCCeEEEee-----ccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEe-----cc-cCC-
Q 018474          169 YGQLRKYD-PKLKETTVLH-----EGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAF-----IE-NLP-  235 (355)
Q Consensus       169 ~g~l~~~d-p~~~~~~~~~-----~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~-----~~-~~~-  235 (355)
                      ...+++|+ ..+++.....     .....|.+++++||++.+|++....+.|.+|+++..+.......     .. ..+ 
T Consensus       166 ~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (365)
T d1jofa_         166 ANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPD  245 (365)
T ss_dssp             TTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCC
T ss_pred             CCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccc
Confidence            33455442 2234433221     22457889999999999999999999999999865432211111     00 000 


Q ss_pred             ---------CCcCceEECCCCC-EEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeE
Q 018474          236 ---------GGPDNINLAPDGS-FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKI  305 (355)
Q Consensus       236 ---------g~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~  305 (355)
                               ..+..++++++|+ +|++.......                             ....-..++++. +|..
T Consensus       246 ~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~-----------------------------~~~~i~~~~~~~-~g~~  295 (365)
T d1jofa_         246 RDPETGKGLYRADVCALTFSGKYMFASSRANKFE-----------------------------LQGYIAGFKLRD-CGSI  295 (365)
T ss_dssp             BCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTT-----------------------------SCCEEEEEEECT-TSCE
T ss_pred             cccccccccCCccceEECCCCCEEEEEcccCCCc-----------------------------cceEEEEEEecC-CCce
Confidence                     1134578999997 56654331100                             011123566666 7654


Q ss_pred             EEE---EECC-CCCcccceeEEEE-eCCEEEEeecCCCeEEEeeCCCC
Q 018474          306 IRD---FNDP-DATYISFVTSAAE-FDGNLYLASLQSNFIGILPLDGP  348 (355)
Q Consensus       306 ~~~---~~~~-~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~  348 (355)
                      ...   ...+ .|. .+..-.+.. ++..||+++..++.|.++++++.
T Consensus       296 ~~~~~~~~~~~~G~-~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         296 EKQLFLSPTPTSGG-HSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEEEEEEECSSCCT-TCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             eeEeEeeEEEcCCC-CccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            332   2222 232 222212222 35679999999999999987654

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.24  E-value=9.7e-09  Score=88.53  Aligned_cols=168  Identities=15%  Similarity=0.213  Sum_probs=119.0

Q ss_pred             eEEEEe-cCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCC-CcEEEEc-CCC--eEEEcCCcCCcccEE
Q 018474           65 ALYTAT-RDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNE-KGLLKVT-EEG--VEAIVPDASFTNDVI  138 (355)
Q Consensus        65 ~l~~~~-~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~-~gl~~~~-~~g--~~~~~~~~~~~~~l~  138 (355)
                      .+|++. .++.|..+|.++++...-...+..|. +++++++|+ ||++... +.+..++ .++  +..+... ..|.+++
T Consensus         3 ~~yV~~~~~~~v~v~D~~t~~~~~~i~~g~~p~-~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~-~~~~~~~   80 (301)
T d1l0qa2           3 FAYIANSESDNISVIDVTSNKVTATIPVGSNPM-GAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG-SSPQGVA   80 (301)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSSSEE-EEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS-SSEEEEE
T ss_pred             EEEEEECCCCEEEEEECCCCeEEEEEECCCCce-EEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecc-ccccccc
Confidence            578765 57899999999998776556667899 999999997 7788755 3477778 456  4444433 5789999


Q ss_pred             EccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEE
Q 018474          139 AASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRY  217 (355)
Q Consensus       139 ~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~  217 (355)
                      ++++|. ++++...                 ...+..++..+++..........+..+++++|++.++++......+..+
T Consensus        81 ~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~  143 (301)
T d1l0qa2          81 VSPDGKQVYVTNMA-----------------SSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVI  143 (301)
T ss_dssp             ECTTSSEEEEEETT-----------------TTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             cccccccccccccc-----------------cceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeee
Confidence            999985 5555443                 3467788888887665555666788999999999998888877778887


Q ss_pred             EeCCCCCcceeEecccCCCCcCceEECCCCC-EEEEeec
Q 018474          218 WLKGDRAGILDAFIENLPGGPDNINLAPDGS-FWIGLIK  255 (355)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~~  255 (355)
                      +.....  ....+  .....|..+..+++++ +|++...
T Consensus       144 ~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  178 (301)
T d1l0qa2         144 NTVTKA--VINTV--SVGRSPKGIAVTPDGTKVYVANFD  178 (301)
T ss_dssp             ETTTTE--EEEEE--ECCSSEEEEEECTTSSEEEEEETT
T ss_pred             eccccc--eeeec--ccCCCceEEEeeccccceeeeccc
Confidence            764321  12222  1223367788888876 5665543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.20  E-value=1.1e-08  Score=89.75  Aligned_cols=256  Identities=14%  Similarity=0.135  Sum_probs=148.3

Q ss_pred             CccCceEecCCCCCCCceEEEeeCCCeEEEEec-CCEEEEEEcC--CCeeEEe--eccCCCcccCeEECCCCC-EEEEeC
Q 018474           39 SMKGLTKLGEGCVNHPEDVSVVVSKGALYTATR-DGWVKYFILH--NETLVNW--KHIDSQSLLGLTTTKDGG-VILCDN  112 (355)
Q Consensus        39 ~l~~~~~~~~~~~~~p~~i~~d~~~g~l~~~~~-~g~i~~~~~~--~g~~~~~--~~~~~~p~~gl~~d~~g~-L~v~~~  112 (355)
                      .|+....+..+  ..|.+|++.|++..||++.. ++.|..++..  ++..+..  ......|. +++++++|+ ||++..
T Consensus        26 ~l~~~~~~~~~--~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~-~l~~spDg~~l~v~~~  102 (333)
T d1ri6a_          26 ALTLTQVVDVP--GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLT-HISTDHQGQFVFVGSY  102 (333)
T ss_dssp             CEEEEEEEECS--SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCS-EEEECTTSSEEEEEET
T ss_pred             CeEEEEEEcCC--CCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCce-EEEEcCCCCEEeeccc
Confidence            34444455543  67899999988888998876 6888776653  3333322  23345688 999999997 788876


Q ss_pred             CCcEE-EEcC-CC--eEE--EcCCcCCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCe-EE-
Q 018474          113 EKGLL-KVTE-EG--VEA--IVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE-TT-  183 (355)
Q Consensus       113 ~~gl~-~~~~-~g--~~~--~~~~~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~-~~-  183 (355)
                      ..+.+ .+.. ..  ...  .......+.++.++++|+ +++++..                 ...+..|+..+.. .. 
T Consensus       103 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~-----------------~~~i~~~~~~~~~~~~~  165 (333)
T d1ri6a_         103 NAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALK-----------------QDRICLFTVSDDGHLVA  165 (333)
T ss_dssp             TTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGG-----------------GTEEEEEEECTTSCEEE
T ss_pred             CCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccc-----------------cceeeEEEeccCCccee
Confidence            55433 3332 22  221  222236788999999995 5555433                 2244444433221 11 


Q ss_pred             Ee-----eccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCC--CcceeEecc---cC--CCCcCceEECCCCCEEE
Q 018474          184 VL-----HEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDR--AGILDAFIE---NL--PGGPDNINLAPDGSFWI  251 (355)
Q Consensus       184 ~~-----~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~--~~~~~~~~~---~~--~g~p~~i~~d~~G~lwv  251 (355)
                      ..     ......|..+++++++..+|+.....+....+......  .........   ..  ...+..++++.+|++.+
T Consensus       166 ~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~  245 (333)
T d1ri6a_         166 QDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLY  245 (333)
T ss_dssp             EEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEE
T ss_pred             eeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCcee
Confidence            11     11234578899999999999998877777777764321  111111110   00  12344567888897444


Q ss_pred             EeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEE-CCCCCcccceeEEEE--eCC
Q 018474          252 GLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFN-DPDATYISFVTSAAE--FDG  328 (355)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~-~~~g~~~~~~~~~~~--~~g  328 (355)
                      .....                                 .....++.+++ ++....... .+.+.   .+..+..  ++.
T Consensus       246 ~~~~~---------------------------------~~~~~~~~~~~-~~~~~~~~~~~~~~~---~p~~~a~spDGk  288 (333)
T d1ri6a_         246 ACDRT---------------------------------ASLITVFSVSE-DGSVLSKEGFQPTET---QPRGFNVDHSGK  288 (333)
T ss_dssp             EEETT---------------------------------TTEEEEEEECT-TSCCEEEEEEEECSS---SCCCEEECTTSS
T ss_pred             eeccc---------------------------------CCeEEEEEEcC-CCCEEEEEEEeCCCC---CeeEEEEeCCCC
Confidence            44331                                 12235666777 554333221 12221   2333443  456


Q ss_pred             EEEEeecCCCeEEEeeCCCCCCC
Q 018474          329 NLYLASLQSNFIGILPLDGPEPQ  351 (355)
Q Consensus       329 ~L~v~~~~~~~i~~~~~~~~~~~  351 (355)
                      +||+++..++.|.+++++..+-.
T Consensus       289 ~l~va~~~~~~v~v~~id~~tG~  311 (333)
T d1ri6a_         289 YLIAAGQKSHHISVYEIVGEQGL  311 (333)
T ss_dssp             EEEEECTTTCEEEEEEEETTTTE
T ss_pred             EEEEEECCCCeEEEEEEECCCCc
Confidence            79999988999999987765543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.04  E-value=2.3e-07  Score=80.76  Aligned_cols=145  Identities=10%  Similarity=-0.001  Sum_probs=98.1

Q ss_pred             eEEEEecCCEEEEEEcCCCeeEEeec---cCCCcccCeEECCCCC-EEEEeCC-CcEEEEc-CCC--eEEEcCCc-----
Q 018474           65 ALYTATRDGWVKYFILHNETLVNWKH---IDSQSLLGLTTTKDGG-VILCDNE-KGLLKVT-EEG--VEAIVPDA-----  131 (355)
Q Consensus        65 ~l~~~~~~g~i~~~~~~~g~~~~~~~---~~~~p~~gl~~d~~g~-L~v~~~~-~gl~~~~-~~g--~~~~~~~~-----  131 (355)
                      .+++++.+++|..+|.++++......   .+..|. ++++++||+ ||++... +.+..+| .++  +..+....     
T Consensus         3 ~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~-~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPM-VPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCC-CEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             EEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCcc-EEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence            57778889999999999887654332   235688 999999997 6777654 3477778 466  44433221     


Q ss_pred             CCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCC
Q 018474          132 SFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESW  210 (355)
Q Consensus       132 ~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~  210 (355)
                      ..+.+++++++| .+|++.....      ............+..+|..+++..........+.++++++||+.+|++.. 
T Consensus        82 ~~~~~v~~s~dg~~l~~~~~~~~------~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-  154 (337)
T d1pbyb_          82 KSLFGAALSPDGKTLAIYESPVR------LELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGR-  154 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEE------ECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESS-
T ss_pred             cceeeEEEcCCCcEEEEeecCCc------ceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcC-
Confidence            678899999998 5666643210      00111112345788899988877665555667899999999998888752 


Q ss_pred             CCeEEEEEe
Q 018474          211 KFRCRRYWL  219 (355)
Q Consensus       211 ~~~i~~~~~  219 (355)
                        .+..++.
T Consensus       155 --~~~~~d~  161 (337)
T d1pbyb_         155 --DLHVMDP  161 (337)
T ss_dssp             --SEEEEET
T ss_pred             --Ccceeee
Confidence              3444554

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.99  E-value=4e-07  Score=79.33  Aligned_cols=172  Identities=12%  Similarity=0.113  Sum_probs=107.4

Q ss_pred             eEEEEe-cCCEEEEEEcC-CCeeE--EeeccCCCcccCeEECCCCC-EEEEeCCC-cEEEE--cCC-C-eEEEcC--CcC
Q 018474           65 ALYTAT-RDGWVKYFILH-NETLV--NWKHIDSQSLLGLTTTKDGG-VILCDNEK-GLLKV--TEE-G-VEAIVP--DAS  132 (355)
Q Consensus        65 ~l~~~~-~~g~i~~~~~~-~g~~~--~~~~~~~~p~~gl~~d~~g~-L~v~~~~~-gl~~~--~~~-g-~~~~~~--~~~  132 (355)
                      .+|+++ .++.|..++.. ++..+  +.....+.+. +|++++||+ ||++.... .+..+  +.. + .+....  ...
T Consensus         5 ~v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~-~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~   83 (333)
T d1ri6a_           5 TVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQ-PMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG   83 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCC-CEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS
T ss_pred             EEEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEe-EEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCC
Confidence            578776 57888888864 33333  2234457788 999999997 78887654 34444  433 3 333222  126


Q ss_pred             CcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEe---eccccccccEEEeCCCCEEEEEe
Q 018474          133 FTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL---HEGFYFANGIALSKNEDFVVVCE  208 (355)
Q Consensus       133 ~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~---~~~~~~pngi~~~~dg~~l~v~~  208 (355)
                      .|.++++++||+ ||+++..                 .+.+..++.........   ......+.++++++|++.+++++
T Consensus        84 ~p~~l~~spDg~~l~v~~~~-----------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~  146 (333)
T d1ri6a_          84 SLTHISTDHQGQFVFVGSYN-----------------AGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPA  146 (333)
T ss_dssp             CCSEEEECTTSSEEEEEETT-----------------TTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEE
T ss_pred             CceEEEEcCCCCEEeecccC-----------------CCceeeeccccccceecccccCCCccceEEEeeecceeeeccc
Confidence            789999999995 7777543                 23444444333332222   23345688999999999999999


Q ss_pred             CCCCeEEEEEeCCCCCcce--eEecc-cCCCCcCceEECCCCCEEEEee
Q 018474          209 SWKFRCRRYWLKGDRAGIL--DAFIE-NLPGGPDNINLAPDGSFWIGLI  254 (355)
Q Consensus       209 ~~~~~i~~~~~~~~~~~~~--~~~~~-~~~g~p~~i~~d~~G~lwv~~~  254 (355)
                      .....+..++.........  ..... .....|..++++.++.+.....
T Consensus       147 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~  195 (333)
T d1ri6a_         147 LKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVN  195 (333)
T ss_dssp             GGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEE
T ss_pred             cccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeec
Confidence            8888999998754321111  11111 1223577889999887655443

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.97  E-value=1.6e-07  Score=86.54  Aligned_cols=171  Identities=7%  Similarity=-0.126  Sum_probs=111.6

Q ss_pred             CeEEEEe-cCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCCCcEEEEc-CCC-e---EEEcCCcCCccc
Q 018474           64 GALYTAT-RDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEKGLLKVT-EEG-V---EAIVPDASFTND  136 (355)
Q Consensus        64 g~l~~~~-~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~~gl~~~~-~~g-~---~~~~~~~~~~~~  136 (355)
                      +.+++.. .+|.|..+|.++++.......+..|+ ++++.+||+ +|++...+.+..++ .++ .   ..+... ..+.+
T Consensus        32 ~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~~~~-~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~-~~~~~  109 (432)
T d1qksa2          32 NLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVH-ISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEARS  109 (432)
T ss_dssp             GEEEEEETTTTEEEEEETTTCCEEEEEECSSCEE-EEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEEEE
T ss_pred             cEEEEEEcCCCEEEEEECCCCcEEEEEeCCCCee-EEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecC-CCCCC
Confidence            3444443 47999999999998776555566799 999999997 67776555566677 344 2   222222 23445


Q ss_pred             EE----EccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecc------------ccccccEEEeC
Q 018474          137 VI----AASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG------------FYFANGIALSK  199 (355)
Q Consensus       137 l~----~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~------------~~~pngi~~~~  199 (355)
                      ++    +++||+ ||++...                 .+.+..||.++++.......            .....++++++
T Consensus       110 ~~~s~~~SpDG~~l~vs~~~-----------------~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~  172 (432)
T d1qksa2         110 IETSKMEGWEDKYAIAGAYW-----------------PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASH  172 (432)
T ss_dssp             EEECCSTTCTTTEEEEEEEE-----------------TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECS
T ss_pred             eEEecccCCCCCEEEEEcCC-----------------CCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECC
Confidence            54    456895 7787543                 45788888888776433211            12234688999


Q ss_pred             CCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474          200 NEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       200 dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      |++.++++....+.|+.++....+......+  .....|.++.++++|++.++...
T Consensus       173 dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i--~~g~~~~~~~~spdg~~~~va~~  226 (432)
T d1qksa2         173 YRPEFIVNVKETGKILLVDYTDLNNLKTTEI--SAERFLHDGGLDGSHRYFITAAN  226 (432)
T ss_dssp             SSSEEEEEETTTTEEEEEETTCSSEEEEEEE--ECCSSEEEEEECTTSCEEEEEEG
T ss_pred             CCCEEEEEEccCCeEEEEEccCCCcceEEEE--cccCccccceECCCCCEEEEecc
Confidence            9999999988889999998754322222222  22345888999999985444433

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.95  E-value=1.5e-06  Score=75.99  Aligned_cols=241  Identities=9%  Similarity=-0.024  Sum_probs=147.4

Q ss_pred             CCCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCee--E-EeeccCCCcccCeEECCCCCEEEEeCC--CcEE-EEc-
Q 018474           48 EGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETL--V-NWKHIDSQSLLGLTTTKDGGVILCDNE--KGLL-KVT-  120 (355)
Q Consensus        48 ~~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~--~-~~~~~~~~p~~gl~~d~~g~L~v~~~~--~gl~-~~~-  120 (355)
                      .+.-..-.++++.|++..|.++..+|.|..++..+++.  . .+......+. ++++.++|+++++...  .... .++ 
T Consensus        55 ~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~-~v~~s~d~~~l~~~~~~~~~~~~v~~~  133 (311)
T d1nr0a1          55 TEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVK-DISWDSESKRIAAVGEGRERFGHVFLF  133 (311)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEE-EEEECTTSCEEEEEECCSSCSEEEEET
T ss_pred             cCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccc-ccccccccccccccccccccccccccc
Confidence            34345568888997777777889999999999866542  1 2222234567 8999999986654432  2223 333 


Q ss_pred             CCC--eEEEcCCcCCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecc-ccccccEE
Q 018474          121 EEG--VEAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG-FYFANGIA  196 (355)
Q Consensus       121 ~~g--~~~~~~~~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~-~~~pngi~  196 (355)
                      +++  ...+......+++++++++|. +.++.+.                 .+.+..||.++++....... ....+.++
T Consensus       134 ~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~-----------------d~~i~i~d~~~~~~~~~~~~~~~~i~~v~  196 (311)
T d1nr0a1         134 DTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSD-----------------DNTVAIFEGPPFKFKSTFGEHTKFVHSVR  196 (311)
T ss_dssp             TTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEET-----------------TSCEEEEETTTBEEEEEECCCSSCEEEEE
T ss_pred             ccccccccccccccccccccccccceeeeccccc-----------------ccccccccccccccccccccccccccccc
Confidence            344  333333335688899999885 4444322                 45688888877765544433 23347899


Q ss_pred             EeCCCCEEEEEeCCCCeEEEEEeCCCC-CcceeEecccCC---CCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHH
Q 018474          197 LSKNEDFVVVCESWKFRCRRYWLKGDR-AGILDAFIENLP---GGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWE  272 (355)
Q Consensus       197 ~~~dg~~l~v~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~---g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~  272 (355)
                      ++|+++.++.+. ..+.|..|+..... ....+.......   +....+.++++|++.++....                
T Consensus       197 ~~p~~~~l~~~~-~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~D----------------  259 (311)
T d1nr0a1         197 YNPDGSLFASTG-GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD----------------  259 (311)
T ss_dssp             ECTTSSEEEEEE-TTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETT----------------
T ss_pred             cCcccccccccc-ccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCC----------------
Confidence            999999665554 56788888875321 111110000111   112346788899877665431                


Q ss_pred             HHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeCCEEEEeecCCCeEEEeeC
Q 018474          273 LLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPL  345 (355)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~  345 (355)
                                          +.|..+|.++++.+..+...... ......+...++.|+.++. .+.|...++
T Consensus       260 --------------------g~v~iwd~~t~~~~~~l~~~~~~-~~~~~~~~~~~~~l~s~s~-dG~i~~wd~  310 (311)
T d1nr0a1         260 --------------------KTIKIWNVATLKVEKTIPVGTRI-EDQQLGIIWTKQALVSISA-NGFINFVNP  310 (311)
T ss_dssp             --------------------SEEEEEETTTTEEEEEEECCSSG-GGCEEEEEECSSCEEEEET-TCCEEEEET
T ss_pred             --------------------CeEEEEECCCCcEEEEEECCCCc-cceEEEEEecCCEEEEEEC-CCEEEEEeC
Confidence                                35777787688888888664432 2334456666777887775 677777665

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.92  E-value=3.2e-07  Score=79.02  Aligned_cols=187  Identities=18%  Similarity=0.245  Sum_probs=119.3

Q ss_pred             eEecCCCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeecc--CCCcccCeEECCCCCEEEEeCCCcEEEEcC
Q 018474           44 TKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI--DSQSLLGLTTTKDGGVILCDNEKGLLKVTE  121 (355)
Q Consensus        44 ~~~~~~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~--~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~  121 (355)
                      .++..|.-..-.++++.|++..|+.++.||.|..+|.++++.......  ..... ++++.++|+++++...+.+..++.
T Consensus         5 ~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~-~v~~~~~g~~~~~~~d~~v~~~~~   83 (299)
T d1nr0a2           5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMIT-GIKTTSKGDLFTVSWDDHLKVVPA   83 (299)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEE-EEEECTTSCEEEEETTTEEEEECS
T ss_pred             ceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEE-EEEeeccceeecccceeeEEEecc
Confidence            456667767778999997777788889999999999988876554322  23356 889999999998877666666663


Q ss_pred             CC--eE---EEc-CCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccE
Q 018474          122 EG--VE---AIV-PDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGI  195 (355)
Q Consensus       122 ~g--~~---~~~-~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi  195 (355)
                      .+  ..   ... .....+..+++.++|++.++..                  .+.+..|+.  ++..... .......+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~------------------~~~i~~~~~--~~~~~~~-~~~~~~~~  142 (299)
T d1nr0a2          84 GGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC------------------YKHIAIYSH--GKLTEVP-ISYNSSCV  142 (299)
T ss_dssp             SSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE------------------SSEEEEEET--TEEEEEE-CSSCEEEE
T ss_pred             CCccccccccccccccccccccccccccccccccc------------------ccccccccc--ccccccc-cccccccc
Confidence            21  11   111 1115677888899987665432                  235666764  2332222 12335678


Q ss_pred             EEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474          196 ALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       196 ~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      +++||++.+++.. ..+.|..|++++.........  ..+.....+.++++|++.++...
T Consensus       143 ~~s~~~~~l~~g~-~dg~i~~~d~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~  199 (299)
T d1nr0a2         143 ALSNDKQFVAVGG-QDSKVHVYKLSGASVSEVKTI--VHPAEITSVAFSNNGAFLVATDQ  199 (299)
T ss_dssp             EECTTSCEEEEEE-TTSEEEEEEEETTEEEEEEEE--ECSSCEEEEEECTTSSEEEEEET
T ss_pred             ccccccccccccc-ccccccccccccccccccccc--ccccccccccccccccccccccc
Confidence            9999999665554 567899999865433222211  22233456788898887666544

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.91  E-value=1.5e-07  Score=82.37  Aligned_cols=91  Identities=9%  Similarity=0.022  Sum_probs=65.5

Q ss_pred             EEeeCCCeEEEEecCCEEEEEEcCCCeeEEeec--cCCCcccCeEECCCCC-EEEEeCCC-cEEEEc-CCC--eEEEcCC
Q 018474           58 SVVVSKGALYTATRDGWVKYFILHNETLVNWKH--IDSQSLLGLTTTKDGG-VILCDNEK-GLLKVT-EEG--VEAIVPD  130 (355)
Q Consensus        58 ~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~--~~~~p~~gl~~d~~g~-L~v~~~~~-gl~~~~-~~g--~~~~~~~  130 (355)
                      ++.+.+..+++++.++.|..+|.++++......  ....|. ++++++||+ +||+.... .+..++ .++  +..+...
T Consensus         3 a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~-~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~   81 (346)
T d1jmxb_           3 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPG-TAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   81 (346)
T ss_dssp             CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSC-EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             cCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcc-eEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence            455456667778889999999999998765333  245688 999999987 67887554 477888 466  3333322


Q ss_pred             c------CCcccEEEccCC-cEEEEe
Q 018474          131 A------SFTNDVIAASDG-TLYFTV  149 (355)
Q Consensus       131 ~------~~~~~l~~d~dG-~ly~~d  149 (355)
                      .      ..|.++++++|| .+|+++
T Consensus        82 ~~~~~~~~~~~~v~~s~DG~~l~v~~  107 (346)
T d1jmxb_          82 SVPGEVGRSMYSFAISPDGKEVYATV  107 (346)
T ss_dssp             CSTTEEEECSSCEEECTTSSEEEEEE
T ss_pred             ccccccCCceEEEEEecCCCEEEEEe
Confidence            1      578899999999 588765

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.89  E-value=1.2e-06  Score=78.78  Aligned_cols=185  Identities=11%  Similarity=0.063  Sum_probs=106.5

Q ss_pred             eEEEEec--CCEEE--EEEcCCCeeEEeec----cCCCcccCeEECCCCC-EEEEeCCCcE--EEEcCCC-e-EEEcC-C
Q 018474           65 ALYTATR--DGWVK--YFILHNETLVNWKH----IDSQSLLGLTTTKDGG-VILCDNEKGL--LKVTEEG-V-EAIVP-D  130 (355)
Q Consensus        65 ~l~~~~~--~g~i~--~~~~~~g~~~~~~~----~~~~p~~gl~~d~~g~-L~v~~~~~gl--~~~~~~g-~-~~~~~-~  130 (355)
                      .||+|+.  .+.|+  .+|.+++++.....    ....+. .|+++++|+ ||++.. +++  +.+++++ . ..... .
T Consensus         4 ~l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s-~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~   81 (365)
T d1jofa_           4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPIS-WMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPI   81 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCS-EEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEEC
T ss_pred             EEEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCC-EEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecC
Confidence            5888875  45785  56777777654321    233456 799998886 677764 344  4444444 3 22211 1


Q ss_pred             cCCcccEEEccCC-cEEEEeCCCC-CCCccccccccccCCCCeEEEEeCCCCeEEEe-----eccccccccEEEeCCCCE
Q 018474          131 ASFTNDVIAASDG-TLYFTVASTK-YTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL-----HEGFYFANGIALSKNEDF  203 (355)
Q Consensus       131 ~~~~~~l~~d~dG-~ly~~d~~~~-~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~-----~~~~~~pngi~~~~dg~~  203 (355)
                      ...|..++++++| .+|+...... ..+  ....+......+.++..+. +++....     .+....|.+++++|||++
T Consensus        82 ~~~p~~v~~~~~~~~~~v~~a~~~~~~v--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~  158 (365)
T d1jofa_          82 GGHPRANDADTNTRAIFLLAAKQPPYAV--YANPFYKFAGYGNVFSVSE-TGKLEKNVQNYEYQENTGIHGMVFDPTETY  158 (365)
T ss_dssp             CSSGGGGCTTSCCEEEEEEECSSTTCCE--EEEEESSSCCEEEEEEECT-TCCEEEEEEEEECCTTCCEEEEEECTTSSE
T ss_pred             CCCcEEEEECCCCCEEEEEEecCCCCEE--EEeEccCCCCcceeEeeee-cceecCcccCcccCCCCcceEEEECCCCCE
Confidence            2579999999998 5787664310 000  0011111111233444443 2222211     112345779999999999


Q ss_pred             EEEEeCCCCeEEEEEeCCCC-CcceeEecc-cCCCCcCceEECCCCC-EEEEee
Q 018474          204 VVVCESWKFRCRRYWLKGDR-AGILDAFIE-NLPGGPDNINLAPDGS-FWIGLI  254 (355)
Q Consensus       204 l~v~~~~~~~i~~~~~~~~~-~~~~~~~~~-~~~g~p~~i~~d~~G~-lwv~~~  254 (355)
                      +|+++.+.+.|++|+.+... ......... ....-|++++++++|+ +|++..
T Consensus       159 l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e  212 (365)
T d1jofa_         159 LYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALME  212 (365)
T ss_dssp             EEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEET
T ss_pred             EEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEecc
Confidence            99999999999999875422 111111111 1223588899999997 456553

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=4.9e-06  Score=72.99  Aligned_cols=228  Identities=10%  Similarity=0.006  Sum_probs=139.0

Q ss_pred             CceEEEeeCCCeEEEEecCCEEEEEEcCCCee--EEe-eccCCCcccCeEECCCCCEEEEeCC-CcEEEEc-CCC--eEE
Q 018474           54 PEDVSVVVSKGALYTATRDGWVKYFILHNETL--VNW-KHIDSQSLLGLTTTKDGGVILCDNE-KGLLKVT-EEG--VEA  126 (355)
Q Consensus        54 p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~--~~~-~~~~~~p~~gl~~d~~g~L~v~~~~-~gl~~~~-~~g--~~~  126 (355)
                      -.++++.+++..|.+++.+|.|..+|....+.  ... ........ .+++.+++.+.++... ..+..++ .++  ...
T Consensus       100 I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~  178 (337)
T d1gxra_         100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACY-ALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQ  178 (337)
T ss_dssp             EEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEE-EEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             EEEEEEcCCCCEEEEeeccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccc
Confidence            45789987777788888999999999754432  221 11223455 6778888876665444 4466666 455  333


Q ss_pred             EcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEE
Q 018474          127 IVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVV  206 (355)
Q Consensus       127 ~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v  206 (355)
                      .......+.+++++++|...++...                 .+.+..||.++++.............++++|+++.++.
T Consensus       179 ~~~~~~~v~~l~~s~~~~~~~~~~~-----------------d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~  241 (337)
T d1gxra_         179 FQGHTDGASCIDISNDGTKLWTGGL-----------------DNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAV  241 (337)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEET-----------------TSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred             ccccccccccccccccccccccccc-----------------cccccccccccceeecccccccceEEEEEcccccccce
Confidence            3333356788899998865544322                 45788888877765433333334567899999996665


Q ss_pred             EeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccC
Q 018474          207 CESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLP  286 (355)
Q Consensus       207 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (355)
                      +. ..+.+..++++....  .. .. ........+.++++|++.++....                              
T Consensus       242 ~~-~d~~i~i~d~~~~~~--~~-~~-~~~~~i~~v~~s~~g~~l~s~s~D------------------------------  286 (337)
T d1gxra_         242 GM-ESSNVEVLHVNKPDK--YQ-LH-LHESCVLSLKFAYCGKWFVSTGKD------------------------------  286 (337)
T ss_dssp             EE-TTSCEEEEETTSSCE--EE-EC-CCSSCEEEEEECTTSSEEEEEETT------------------------------
T ss_pred             ec-ccccccccccccccc--cc-cc-ccccccceEEECCCCCEEEEEeCC------------------------------
Confidence            54 567888898754321  11 11 222334667889999877765431                              


Q ss_pred             CCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeC-CEEEEeecCCCeEEEeeC
Q 018474          287 MGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFD-GNLYLASLQSNFIGILPL  345 (355)
Q Consensus       287 ~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~-g~L~v~~~~~~~i~~~~~  345 (355)
                            +.|..+|..+++.+..+.. .+    .+..+.... +++.++.-....|...++
T Consensus       287 ------g~i~iwd~~~~~~~~~~~~-~~----~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         287 ------NLLNAWRTPYGASIFQSKE-SS----SVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             ------SEEEEEETTTCCEEEEEEC-SS----CEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             ------CeEEEEECCCCCEEEEccC-CC----CEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence                  4577778757777766643 22    355555543 444443334566776654

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.83  E-value=1.5e-06  Score=79.42  Aligned_cols=183  Identities=7%  Similarity=-0.064  Sum_probs=111.5

Q ss_pred             CCCceEEEeeC-CCeEEEEe-cCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCCCcEEEEc-CCC-eEE
Q 018474           52 NHPEDVSVVVS-KGALYTAT-RDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEKGLLKVT-EEG-VEA  126 (355)
Q Consensus        52 ~~p~~i~~d~~-~g~l~~~~-~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~~gl~~~~-~~g-~~~  126 (355)
                      ..|..+.++.+ .+.++++. .+|.|..+|..+++.......+..|+ ++++.+||+ ||++...+.+..++ .++ ...
T Consensus        19 ~~p~~~~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~~~~-~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~   97 (426)
T d1hzua2          19 DRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVH-ISRMSASGRYLLVIGRDARIDMIDLWAKEPTK   97 (426)
T ss_dssp             GSCSSCCSCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECCSSEE-EEEECTTSCEEEEEETTSEEEEEETTSSSCEE
T ss_pred             cCCCcccccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCCCCee-EEEECCCCCEEEEEeCCCCEEEEEccCCceeE
Confidence            34444444422 34455544 57999999999998765555566799 999999997 56666544566666 455 222


Q ss_pred             ---EcCCcCCcccE----EEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecc----------
Q 018474          127 ---IVPDASFTNDV----IAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG----------  188 (355)
Q Consensus       127 ---~~~~~~~~~~l----~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~----------  188 (355)
                         +... ..+.++    ++.|||+ ++++...                 .+.+..+|.++++.......          
T Consensus        98 ~~~i~~~-~~~~~~~~s~~~spDG~~l~v~~~~-----------------~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~  159 (426)
T d1hzua2          98 VAEIKIG-IEARSVESSKFKGYEDRYTIAGAYW-----------------PPQFAIMDGETLEPKQIVSTRGMTVDTQTY  159 (426)
T ss_dssp             EEEEECC-SEEEEEEECCSTTCTTTEEEEEEEE-----------------SSEEEEEETTTCCEEEEEECCEECSSSCCE
T ss_pred             EEEEeCC-CCCcceEEeeeecCCCCEEEEeecC-----------------CCeEEEEcCCccceeEEeeccCCCccceee
Confidence               2221 234444    4456885 6776533                 34567777777665433211          


Q ss_pred             --ccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474          189 --FYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       189 --~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                        ......++.++|+..++++....+.+..+.............  .....|.++.++++|+++.....
T Consensus       160 ~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~a~~  226 (426)
T d1hzua2         160 HPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI--GAAPFLADGGWDSSHRYFMTAAN  226 (426)
T ss_dssp             ESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEE--ECCSSEEEEEECTTSCEEEEEET
T ss_pred             cCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEe--ccCCccEeeeECCCCcEEEeeee
Confidence              111235778888888888888888887777643322222211  22234778899999987776654

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.75  E-value=6.5e-06  Score=71.74  Aligned_cols=184  Identities=10%  Similarity=-0.038  Sum_probs=109.2

Q ss_pred             CCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeec-cCCCcccCeEECCCCCEEEEeCCCc-EEEEc-CCC---e-
Q 018474           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH-IDSQSLLGLTTTKDGGVILCDNEKG-LLKVT-EEG---V-  124 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~-~~~~p~~gl~~d~~g~L~v~~~~~g-l~~~~-~~g---~-  124 (355)
                      ..|..++.+|+++.++.+. ++.++.++..++....... ....+. ++++.++|++.++...+| +..++ .++   . 
T Consensus        18 ~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~-~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~   95 (311)
T d1nr0a1          18 GTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTT-VAKTSPSGYYCASGDVHGNVRIWDTTQTTHILK   95 (311)
T ss_dssp             TCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEEESSSTTCCEE
T ss_pred             CCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEE-EEEEeCCCCeEeccccCceEeeeeeeccccccc
Confidence            3567788997777776664 6678899987765543322 234566 899999998776544455 44445 333   2 


Q ss_pred             EEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEE-EeeccccccccEEEeCCCCE
Q 018474          125 EAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT-VLHEGFYFANGIALSKNEDF  203 (355)
Q Consensus       125 ~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~-~~~~~~~~pngi~~~~dg~~  203 (355)
                      ..+......+.+++++++|+.+++.+..               ....+..++-++++.. .+.........++++|+++.
T Consensus        96 ~~~~~~~~~v~~v~~s~d~~~l~~~~~~---------------~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~  160 (311)
T d1nr0a1          96 TTIPVFSGPVKDISWDSESKRIAAVGEG---------------RERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPF  160 (311)
T ss_dssp             EEEECSSSCEEEEEECTTSCEEEEEECC---------------SSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSC
T ss_pred             cccccccCcccccccccccccccccccc---------------cccccccccccccccccccccccccccccccccccee
Confidence            2233333678899999999766654321               0112333444344322 11111223467889999987


Q ss_pred             EEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474          204 VVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       204 l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      ++++....+.|..|+.+..   +..............+.++++|++.++...
T Consensus       161 ~l~sgs~d~~i~i~d~~~~---~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~  209 (311)
T d1nr0a1         161 RIISGSDDNTVAIFEGPPF---KFKSTFGEHTKFVHSVRYNPDGSLFASTGG  209 (311)
T ss_dssp             EEEEEETTSCEEEEETTTB---EEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             eeccccccccccccccccc---ccccccccccccccccccCccccccccccc
Confidence            7777777778988887532   211112122222456788899987776544

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=98.73  E-value=1.7e-06  Score=79.84  Aligned_cols=165  Identities=11%  Similarity=0.167  Sum_probs=103.4

Q ss_pred             ceEecCCCCCCCceEEEeeCCCeEEEEec-CCEEEEEEcCCCeeEEeeccC---------CCcccCeEECCC----CCEE
Q 018474           43 LTKLGEGCVNHPEDVSVVVSKGALYTATR-DGWVKYFILHNETLVNWKHID---------SQSLLGLTTTKD----GGVI  108 (355)
Q Consensus        43 ~~~~~~~~~~~p~~i~~d~~~g~l~~~~~-~g~i~~~~~~~g~~~~~~~~~---------~~p~~gl~~d~~----g~L~  108 (355)
                      .+.+.++ +..|.+|++. .++.+|++.. .|+|+++++++++.+.+....         +-.. +|++|++    +.+|
T Consensus        19 ~~~ia~~-L~~P~~la~~-pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLL-gia~~Pdf~~n~~iY   95 (450)
T d1crua_          19 KKVILSN-LNKPHALLWG-PDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLL-GFAFHPDFKNNPYIY   95 (450)
T ss_dssp             EEEEECC-CSSEEEEEEC-TTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEE-EEEECTTTTTSCEEE
T ss_pred             EEEEECC-CCCceEEEEe-CCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCcee-eEEeCCCCccCCEEE
Confidence            3566666 8999999999 6778999886 699999998888766554221         1234 6888864    6788


Q ss_pred             EEeC---------C--C--cEEEEc--CCC--e---EEEcC----Cc-CCcccEEEccCCcEEEEeCCCCCCCccc----
Q 018474          109 LCDN---------E--K--GLLKVT--EEG--V---EAIVP----DA-SFTNDVIAASDGTLYFTVASTKYTPTDF----  159 (355)
Q Consensus       109 v~~~---------~--~--gl~~~~--~~g--~---~~~~~----~~-~~~~~l~~d~dG~ly~~d~~~~~~~~~~----  159 (355)
                      ++-.         .  .  -+.++.  ...  .   +.+..    .. .+-..|++++||.||++...........    
T Consensus        96 vsyt~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd~~~~~~~~~~~~  175 (450)
T d1crua_          96 ISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLP  175 (450)
T ss_dssp             EEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTSC
T ss_pred             EEEecCCCCCcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecCCCcccccccccc
Confidence            8531         0  0  122332  221  1   11111    11 4566799999999999875421100000    


Q ss_pred             ---cc--------cccccCCCCeEEEEeCCCCeE-----------EEeeccccccccEEEeCCCCEEEEEeCCC
Q 018474          160 ---YK--------DMAEGKPYGQLRKYDPKLKET-----------TVLHEGFYFANGIALSKNEDFVVVCESWK  211 (355)
Q Consensus       160 ---~~--------~~~~~~~~g~l~~~dp~~~~~-----------~~~~~~~~~pngi~~~~dg~~l~v~~~~~  211 (355)
                         ..        .--.....|.++|+++++...           +.++.++.+|.|++++++|+ ||++|.+.
T Consensus       176 ~~~~~~~~~~~~~~q~~~~~~Gkilri~~dg~~~~dnP~~~~~~~ei~a~G~RNp~g~~~~p~g~-l~~~e~G~  248 (450)
T d1crua_         176 NQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGK-LLQSEQGP  248 (450)
T ss_dssp             CCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECTTSC-EEEEEECS
T ss_pred             cccccCcccccccccccccccCceEEeeccccccccccccccccceEEEeccccccceeecccce-eeeccccc
Confidence               00        000113358899998864421           35678899999999999887 99998753

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.67  E-value=1.1e-05  Score=69.56  Aligned_cols=217  Identities=14%  Similarity=0.099  Sum_probs=131.7

Q ss_pred             CCCCceEEEeeCCCeEEEEe-cCCEEEEEEcCCCeeEEeecc------CCCcccCeEECCCCC-EEEEeCC---------
Q 018474           51 VNHPEDVSVVVSKGALYTAT-RDGWVKYFILHNETLVNWKHI------DSQSLLGLTTTKDGG-VILCDNE---------  113 (355)
Q Consensus        51 ~~~p~~i~~d~~~g~l~~~~-~~g~i~~~~~~~g~~~~~~~~------~~~p~~gl~~d~~g~-L~v~~~~---------  113 (355)
                      ...|.++++.|++..+|++. .++.|..+|..+++...-...      ...+. ++++.++|+ +|++...         
T Consensus        33 ~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~-~v~~s~dg~~l~~~~~~~~~~~~~~~  111 (337)
T d1pbyb_          33 GPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLF-GAALSPDGKTLAIYESPVRLELTHFE  111 (337)
T ss_dssp             TTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTT-CEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred             CCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCccccccee-eEEEcCCCcEEEEeecCCcceeeecc
Confidence            46799999997777788764 589999999988876543221      13477 899998886 5555421         


Q ss_pred             ---CcEEEEc-CCC--eEEEcCCcCCcccEEEccCC-cEEEEeCCCC-CCCcc-----------cc---------cc---
Q 018474          114 ---KGLLKVT-EEG--VEAIVPDASFTNDVIAASDG-TLYFTVASTK-YTPTD-----------FY---------KD---  162 (355)
Q Consensus       114 ---~gl~~~~-~~g--~~~~~~~~~~~~~l~~d~dG-~ly~~d~~~~-~~~~~-----------~~---------~~---  162 (355)
                         ..+..++ .++  ...+.. ...++++++++|| .+|+++.... +....           ..         ..   
T Consensus       112 ~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (337)
T d1pbyb_         112 VQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWN  190 (337)
T ss_dssp             ECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEESSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCC
T ss_pred             ccccceeeccccCCeEEEeccc-cCCceEEEEcCCCCEEEEEcCCcceeeeecCcEEEEeecCCccccceecCCcceeec
Confidence               1233444 244  222322 2578899999999 5666543210 00000           00         00   


Q ss_pred             ---------------------ccccCCCCeEEEEeCCCCeEEEe--eccccccccEEEeCCCCEEEEEeCCCCeEEEEEe
Q 018474          163 ---------------------MAEGKPYGQLRKYDPKLKETTVL--HEGFYFANGIALSKNEDFVVVCESWKFRCRRYWL  219 (355)
Q Consensus       163 ---------------------~~~~~~~g~l~~~dp~~~~~~~~--~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~  219 (355)
                                           .........+..++..+++....  ......+..++++++++.++..+   +.|..|++
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~v~d~  267 (337)
T d1pbyb_         191 QHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAY---NVLESFDL  267 (337)
T ss_dssp             CCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEEE---SEEEEEET
T ss_pred             cccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEcc---ccEEEEEC
Confidence                                 00001123466677666654432  22234455678899999887765   68899997


Q ss_pred             CCCCCcceeEecccCCCCcCceEECCCCC-EEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEE
Q 018474          220 KGDRAGILDAFIENLPGGPDNINLAPDGS-FWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKV  298 (355)
Q Consensus       220 ~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  298 (355)
                      ...+.  .. .. ..+..|..+++++||+ +|++...                                     +.|..+
T Consensus       268 ~~~~~--~~-~~-~~~~~~~~~~~s~dG~~l~v~~~~-------------------------------------~~i~v~  306 (337)
T d1pbyb_         268 EKNAS--IK-RV-PLPHSYYSVNVSTDGSTVWLGGAL-------------------------------------GDLAAY  306 (337)
T ss_dssp             TTTEE--EE-EE-ECSSCCCEEEECTTSCEEEEESBS-------------------------------------SEEEEE
T ss_pred             CCCcE--EE-EE-cCCCCEEEEEECCCCCEEEEEeCC-------------------------------------CcEEEE
Confidence            54321  11 11 2344578899999997 6776543                                     458889


Q ss_pred             eCCCCeEEEEEECCC
Q 018474          299 DGNDGKIIRDFNDPD  313 (355)
Q Consensus       299 ~~~~g~~~~~~~~~~  313 (355)
                      |.++++.+..+..+.
T Consensus       307 D~~t~~~v~~i~~~g  321 (337)
T d1pbyb_         307 DAETLEKKGQVDLPG  321 (337)
T ss_dssp             ETTTCCEEEEEECGG
T ss_pred             ECCCCcEEEEEECCC
Confidence            987889888887654

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.59  E-value=6.7e-05  Score=64.41  Aligned_cols=252  Identities=13%  Similarity=0.087  Sum_probs=136.6

Q ss_pred             EecCCCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeecc-CCCcccCeEECCCCCEEEEeCCCc-EEEEc-C
Q 018474           45 KLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI-DSQSLLGLTTTKDGGVILCDNEKG-LLKVT-E  121 (355)
Q Consensus        45 ~~~~~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~-~~~p~~gl~~d~~g~L~v~~~~~g-l~~~~-~  121 (355)
                      +...|.-..-.++++.+++..|.+++.||.|..+|..+++....... ...+. .+++.++|++.++....+ +...+ .
T Consensus        49 ~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~-~v~~~~~~~~l~~~~~d~~i~~~~~~  127 (340)
T d1tbga_          49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVM-TCAYAPSGNYVACGGLDNICSIYNLK  127 (340)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEE-EEEECTTSSEEEEEETTCCEEEEESS
T ss_pred             EEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEE-eeEeeccceeeeeecccceeeccccc
Confidence            34446656678999997777788888999999999988876543332 34466 899999988665544444 33333 1


Q ss_pred             CC------eEEEcCCcCCcccE---------EEccCCcEEEEeCCCC----------CCCcc-----ccccccccCCCCe
Q 018474          122 EG------VEAIVPDASFTNDV---------IAASDGTLYFTVASTK----------YTPTD-----FYKDMAEGKPYGQ  171 (355)
Q Consensus       122 ~g------~~~~~~~~~~~~~l---------~~d~dG~ly~~d~~~~----------~~~~~-----~~~~~~~~~~~g~  171 (355)
                      ..      ...+..........         ....++..........          .....     ....+..+...+.
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  207 (340)
T d1tbga_         128 TREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDAS  207 (340)
T ss_dssp             SSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTE
T ss_pred             ccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCce
Confidence            11      11222111011111         1111221111111000          00000     0011223344567


Q ss_pred             EEEEeCCCCeEEEeecc-ccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecc-cCCCCcCceEECCCCCE
Q 018474          172 LRKYDPKLKETTVLHEG-FYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIE-NLPGGPDNINLAPDGSF  249 (355)
Q Consensus       172 l~~~dp~~~~~~~~~~~-~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~g~p~~i~~d~~G~l  249 (355)
                      +..||..+++......+ ....+.++++|+++.++.+ ...+.|..+++....  ....+.. ........+.++++|++
T Consensus       208 v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~-s~d~~i~~~~~~~~~--~~~~~~~~~~~~~i~~~~~s~~~~~  284 (340)
T d1tbga_         208 AKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATG-SDDATCRLFDLRADQ--ELMTYSHDNIICGITSVSFSKSGRL  284 (340)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE-ETTSCEEEEETTTTE--EEEEECCTTCCSCEEEEEECSSSCE
T ss_pred             EEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEE-eCCCeEEEEeecccc--cccccccccccCceEEEEECCCCCE
Confidence            88899877765433332 2335678999999965554 456778888875321  2222211 11112345678899987


Q ss_pred             EEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeC-C
Q 018474          250 WIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFD-G  328 (355)
Q Consensus       250 wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~-g  328 (355)
                      .++....                                    +.|..+|..+++.+..+..+.+    .++.+.... +
T Consensus       285 l~~g~~d------------------------------------g~i~iwd~~~~~~~~~~~~H~~----~V~~l~~s~d~  324 (340)
T d1tbga_         285 LLAGYDD------------------------------------FNCNVWDALKADRAGVLAGHDN----RVSCLGVTDDG  324 (340)
T ss_dssp             EEEEETT------------------------------------SCEEEEETTTCCEEEEECCCSS----CEEEEEECTTS
T ss_pred             EEEEECC------------------------------------CEEEEEECCCCcEEEEEcCCCC----CEEEEEEeCCC
Confidence            7665431                                    3577788768888888866554    456666543 4


Q ss_pred             E-EEEeecCCCeEE
Q 018474          329 N-LYLASLQSNFIG  341 (355)
Q Consensus       329 ~-L~v~~~~~~~i~  341 (355)
                      + |..|+. .+.|.
T Consensus       325 ~~l~s~s~-Dg~v~  337 (340)
T d1tbga_         325 MAVATGSW-DSFLK  337 (340)
T ss_dssp             SCEEEEET-TSCEE
T ss_pred             CEEEEEcc-CCEEE
Confidence            4 444443 44443

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.58  E-value=8.8e-06  Score=69.59  Aligned_cols=180  Identities=15%  Similarity=0.136  Sum_probs=108.1

Q ss_pred             CCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEE----eeccCCCcccCeEECCCCCEEEEeCCCcEEEEcCCC-eEEE
Q 018474           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETLVN----WKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEEG-VEAI  127 (355)
Q Consensus        53 ~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~----~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~~g-~~~~  127 (355)
                      .-.++++. +++.++++..++.+..++........    .......+. ++++.++|++.++...+.+..++... .+..
T Consensus        57 ~v~~v~~~-~~g~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~  134 (299)
T d1nr0a2          57 MITGIKTT-SKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPL-GLAVSADGDIAVAACYKHIAIYSHGKLTEVP  134 (299)
T ss_dssp             CEEEEEEC-TTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEE-EEEECTTSSCEEEEESSEEEEEETTEEEEEE
T ss_pred             cEEEEEee-ccceeecccceeeEEEeccCCcccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence            34678888 56778888889999888764332111    112234566 78888899877776665666655333 3322


Q ss_pred             cCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee--ccccccccEEEeCCCCEEE
Q 018474          128 VPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH--EGFYFANGIALSKNEDFVV  205 (355)
Q Consensus       128 ~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~--~~~~~pngi~~~~dg~~l~  205 (355)
                      ..  ..+..+++.+++++.++...                 .+.+..||.++++.....  ........++++|+++.++
T Consensus       135 ~~--~~~~~~~~s~~~~~l~~g~~-----------------dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  195 (299)
T d1nr0a2         135 IS--YNSSCVALSNDKQFVAVGGQ-----------------DSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLV  195 (299)
T ss_dssp             CS--SCEEEEEECTTSCEEEEEET-----------------TSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred             cc--cccccccccccccccccccc-----------------ccccccccccccccccccccccccccccccccccccccc
Confidence            22  34667888898876654322                 467888887666654332  1223356789999999666


Q ss_pred             EEeCCCCeEEEEEeCCCC-CcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474          206 VCESWKFRCRRYWLKGDR-AGILDAFIENLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       206 v~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      .+. ..+.|..|++.... ......+. ........+.++++|++.++...
T Consensus       196 ~~~-~d~~i~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~sgs~  244 (299)
T d1nr0a2         196 ATD-QSRKVIPYSVANNFELAHTNSWT-FHTAKVACVSWSPDNVRLATGSL  244 (299)
T ss_dssp             EEE-TTSCEEEEEGGGTTEESCCCCCC-CCSSCEEEEEECTTSSEEEEEET
T ss_pred             ccc-ccccccccccccccccccccccc-ccccccccccccccccceEEEcC
Confidence            554 56789999875422 11111111 11122344678889987665433

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.57  E-value=3e-06  Score=73.66  Aligned_cols=137  Identities=17%  Similarity=0.115  Sum_probs=85.2

Q ss_pred             CeEECCCCCEEE-EeCCCcEEEEc-CCC--eEEEcCC-cCCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCe
Q 018474           98 GLTTTKDGGVIL-CDNEKGLLKVT-EEG--VEAIVPD-ASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQ  171 (355)
Q Consensus        98 gl~~d~~g~L~v-~~~~~gl~~~~-~~g--~~~~~~~-~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~  171 (355)
                      |+++.++|+.++ +...+.|..+| +++  ++.+... ...|.+++++||| .+|+++..                 .+.
T Consensus         1 g~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~-----------------~~~   63 (346)
T d1jmxb_           1 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH-----------------YGD   63 (346)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETT-----------------TTE
T ss_pred             CccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECC-----------------CCc
Confidence            567777887655 44445688888 466  4544322 2579999999999 47887654                 568


Q ss_pred             EEEEeCCCCeEEEeecc-------ccccccEEEeCCCCEEEEEeC-----------CCCeEEEEEeCCCC-CcceeEecc
Q 018474          172 LRKYDPKLKETTVLHEG-------FYFANGIALSKNEDFVVVCES-----------WKFRCRRYWLKGDR-AGILDAFIE  232 (355)
Q Consensus       172 l~~~dp~~~~~~~~~~~-------~~~pngi~~~~dg~~l~v~~~-----------~~~~i~~~~~~~~~-~~~~~~~~~  232 (355)
                      ++.||..+++.......       ...|.+++++|||+.+|++..           ....+..++....+ .......  
T Consensus        64 v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--  141 (346)
T d1jmxb_          64 IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF--  141 (346)
T ss_dssp             EEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE--
T ss_pred             EEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEee--
Confidence            99999988876433211       235889999999999999864           23455556553221 1111111  


Q ss_pred             cCCCCcCceEECCCCCEEEEe
Q 018474          233 NLPGGPDNINLAPDGSFWIGL  253 (355)
Q Consensus       233 ~~~g~p~~i~~d~~G~lwv~~  253 (355)
                      ..+.....+....+|++++..
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~  162 (346)
T d1jmxb_         142 PMPRQVYLMRAADDGSLYVAG  162 (346)
T ss_dssp             ECCSSCCCEEECTTSCEEEES
T ss_pred             eccCceEEEEecCCCEEEEeC
Confidence            112222334556677777764

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.54  E-value=6.1e-06  Score=75.62  Aligned_cols=158  Identities=14%  Similarity=0.048  Sum_probs=105.4

Q ss_pred             eEecCCCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEee--ccCCCcccCeEE----CCCCC-EEEEeCCC-c
Q 018474           44 TKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWK--HIDSQSLLGLTT----TKDGG-VILCDNEK-G  115 (355)
Q Consensus        44 ~~~~~~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~--~~~~~p~~gl~~----d~~g~-L~v~~~~~-g  115 (355)
                      ..+..|  ..|.++++.|++..+|+++.+|.+..+|..+++.....  ..+..+. ++++    .+||+ ||++.... .
T Consensus        56 ~~~~~g--~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~-~~~~s~~~SpDG~~l~vs~~~~~~  132 (432)
T d1qksa2          56 TVLDTG--YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEAR-SIETSKMEGWEDKYAIAGAYWPPQ  132 (432)
T ss_dssp             EEEECS--SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEE-EEEECCSTTCTTTEEEEEEEETTE
T ss_pred             EEEeCC--CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCC-CeEEecccCCCCCEEEEEcCCCCe
Confidence            455555  57999999998999999999999999998777543222  2233455 5554    46887 67766543 4


Q ss_pred             EEEEc-CCC--eEEEcCCc-----------CCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCC
Q 018474          116 LLKVT-EEG--VEAIVPDA-----------SFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLK  180 (355)
Q Consensus       116 l~~~~-~~g--~~~~~~~~-----------~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~  180 (355)
                      +..++ .++  +..+....           ..+..++.+++|. ++++...                 .+.+..+|..+.
T Consensus       133 v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~-----------------~~~i~~~d~~~~  195 (432)
T d1qksa2         133 YVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE-----------------TGKILLVDYTDL  195 (432)
T ss_dssp             EEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT-----------------TTEEEEEETTCS
T ss_pred             EEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEcc-----------------CCeEEEEEccCC
Confidence            66666 455  44332211           3344567788875 4454332                 567888877655


Q ss_pred             eEEEe--eccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCC
Q 018474          181 ETTVL--HEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKG  221 (355)
Q Consensus       181 ~~~~~--~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~  221 (355)
                      +....  ......|.+++++|||+.++++....+.+..++.+.
T Consensus       196 ~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~  238 (432)
T d1qksa2         196 NNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE  238 (432)
T ss_dssp             SEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT
T ss_pred             CcceEEEEcccCccccceECCCCCEEEEeccccceEEEeeccc
Confidence            43222  223456889999999999999998888898888754

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.51  E-value=4.4e-05  Score=67.72  Aligned_cols=150  Identities=11%  Similarity=0.031  Sum_probs=91.1

Q ss_pred             ceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeec---cCCCcccCeEECCCCCEEEEeCCCc-EEEEc-CCC-eE-EE
Q 018474           55 EDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH---IDSQSLLGLTTTKDGGVILCDNEKG-LLKVT-EEG-VE-AI  127 (355)
Q Consensus        55 ~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~---~~~~p~~gl~~d~~g~L~v~~~~~g-l~~~~-~~g-~~-~~  127 (355)
                      .++++.+++..+.+++.+|.|..++..+++......   ..+.+. ++++.++|++.++...++ +..++ .++ .+ .+
T Consensus        11 t~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~-~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~   89 (371)
T d1k8kc_          11 SCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVT-GVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTL   89 (371)
T ss_dssp             CEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEE-EEEEETTTTEEEEEETTSCEEEEEEETTEEEEEE
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEE-EEEECCCCCEEEEEECCCeEEEEeeccccccccc
Confidence            689999666667778889999999987776544322   123467 899999998666543444 44445 344 22 22


Q ss_pred             c--CCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee--ccc-cccccEEEeCCCC
Q 018474          128 V--PDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH--EGF-YFANGIALSKNED  202 (355)
Q Consensus       128 ~--~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~--~~~-~~pngi~~~~dg~  202 (355)
                      .  .....+.++.++|+|+..++.+.               ...-.++.++..........  ... .....++++||++
T Consensus        90 ~~~~~~~~v~~i~~~p~~~~l~~~s~---------------d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~  154 (371)
T d1k8kc_          90 VILRINRAARCVRWAPNEKKFAVGSG---------------SRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV  154 (371)
T ss_dssp             ECCCCSSCEEEEEECTTSSEEEEEET---------------TSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS
T ss_pred             ccccccccccccccccccccceeecc---------------cCcceeeeeeccccccccccccccccccccccccccccc
Confidence            2  22256888999999975554332               11224566665444322211  111 2235688999999


Q ss_pred             EEEEEeCCCCeEEEEEeCC
Q 018474          203 FVVVCESWKFRCRRYWLKG  221 (355)
Q Consensus       203 ~l~v~~~~~~~i~~~~~~~  221 (355)
                      .+ ++....+.|..|+...
T Consensus       155 ~l-~s~s~D~~v~v~~~~~  172 (371)
T d1k8kc_         155 LL-AAGSCDFKCRIFSAYI  172 (371)
T ss_dssp             EE-EEEETTSCEEEEECCC
T ss_pred             ce-eccccCcEEEEEeecc
Confidence            65 4444567788887643

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=1.1e-05  Score=70.78  Aligned_cols=150  Identities=11%  Similarity=0.083  Sum_probs=101.9

Q ss_pred             CCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEE-EeCCCcEEEEc-CCC-eEEE
Q 018474           51 VNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVIL-CDNEKGLLKVT-EEG-VEAI  127 (355)
Q Consensus        51 ~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v-~~~~~gl~~~~-~~g-~~~~  127 (355)
                      .....++++.+.+..+++++.++.+..+|..+++..........+. .+++++++++++ +...+.+..++ ..+ ....
T Consensus       183 ~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~-~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  261 (337)
T d1gxra_         183 TDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIF-SLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL  261 (337)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEE-EEEECTTSSEEEEEETTSCEEEEETTSSCEEEE
T ss_pred             ccccccccccccccccccccccccccccccccceeecccccccceE-EEEEcccccccceeccccccccccccccccccc
Confidence            3445678888667788888999999999998887554333445677 899998887655 44444466666 344 3333


Q ss_pred             cCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEE
Q 018474          128 VPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVC  207 (355)
Q Consensus       128 ~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~  207 (355)
                      ......+++++++++|++.++.+.                 .+.+..||..+++.............++++||++.|+. 
T Consensus       262 ~~~~~~i~~v~~s~~g~~l~s~s~-----------------Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t-  323 (337)
T d1gxra_         262 HLHESCVLSLKFAYCGKWFVSTGK-----------------DNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVT-  323 (337)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEET-----------------TSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEE-
T ss_pred             cccccccceEEECCCCCEEEEEeC-----------------CCeEEEEECCCCCEEEEccCCCCEEEEEEeCCCCEEEE-
Confidence            333367889999999987776433                 46788888877765433333344567899999996554 


Q ss_pred             eCCCCeEEEEEe
Q 018474          208 ESWKFRCRRYWL  219 (355)
Q Consensus       208 ~~~~~~i~~~~~  219 (355)
                      ....+.|..|++
T Consensus       324 ~s~D~~I~vWdl  335 (337)
T d1gxra_         324 GSGDKKATVYEV  335 (337)
T ss_dssp             EETTSCEEEEEE
T ss_pred             EeCCCeEEEEEE
Confidence            445667877765

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.48  E-value=0.00017  Score=62.39  Aligned_cols=152  Identities=7%  Similarity=0.066  Sum_probs=99.2

Q ss_pred             CCCCCCceEEEeeCCCeEEEEecC-C-EEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCC-CcEEEEcC-CC-
Q 018474           49 GCVNHPEDVSVVVSKGALYTATRD-G-WVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNE-KGLLKVTE-EG-  123 (355)
Q Consensus        49 ~~~~~p~~i~~d~~~g~l~~~~~~-g-~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~-~gl~~~~~-~g-  123 (355)
                      +.-....++++.|+++.|+++..+ | .|+.++.++++.+.+......+. .+++.++|+..++... ..++.++. ++ 
T Consensus        40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~~v~-~~~~spdg~~l~~~~~~~~~~~~~~~~~~  118 (360)
T d1k32a3          40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVF-AMGVDRNGKFAVVANDRFEIMTVDLETGK  118 (360)
T ss_dssp             SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEE-EEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCCceEE-eeeecccccccceeccccccccccccccc
Confidence            334667899999766677665543 3 57788888888877665556677 8999999986555444 44666664 44 


Q ss_pred             -eEEEcCCcCCcccEEEccCCcEE-EEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCC
Q 018474          124 -VEAIVPDASFTNDVIAASDGTLY-FTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNE  201 (355)
Q Consensus       124 -~~~~~~~~~~~~~l~~d~dG~ly-~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg  201 (355)
                       ...+........++++++||+.. ++.....        ....+...+.+..+|..+++...+........+++++|||
T Consensus       119 ~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~--------~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg  190 (360)
T d1k32a3         119 PTVIERSREAMITDFTISDNSRFIAYGFPLKH--------GETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADS  190 (360)
T ss_dssp             EEEEEECSSSCCCCEEECTTSCEEEEEEEECS--------STTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTS
T ss_pred             eeeeeecccccccchhhccceeeeeeeccccc--------cceeeccccceeeeccccCceeeecccccccccccccCCC
Confidence             33343333677889999999644 3322110        0011122345778898888776655554555678999999


Q ss_pred             CEEEEEeC
Q 018474          202 DFVVVCES  209 (355)
Q Consensus       202 ~~l~v~~~  209 (355)
                      +.|+++..
T Consensus       191 ~~l~~~s~  198 (360)
T d1k32a3         191 KNLYYLSY  198 (360)
T ss_dssp             CEEEEEES
T ss_pred             CEEEEEeC
Confidence            98877653

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.48  E-value=0.00019  Score=62.25  Aligned_cols=234  Identities=11%  Similarity=0.048  Sum_probs=130.7

Q ss_pred             CceEEEeeC-C-CeEEEEecCCEEEEEEcCCCe----eE-----EeeccCCCcccCeEECCCCCEEEE-eCC-Cc-EEEE
Q 018474           54 PEDVSVVVS-K-GALYTATRDGWVKYFILHNET----LV-----NWKHIDSQSLLGLTTTKDGGVILC-DNE-KG-LLKV  119 (355)
Q Consensus        54 p~~i~~d~~-~-g~l~~~~~~g~i~~~~~~~g~----~~-----~~~~~~~~p~~gl~~d~~g~L~v~-~~~-~g-l~~~  119 (355)
                      -.++++.|. + ..+..++.+|.|..++..+++    ..     .+....+... .+++.++|+.+++ ..+ .+ +..+
T Consensus        66 v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~-~v~~s~~~~~l~~~~~~~~~~~~~~  144 (325)
T d1pgua1          66 VTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPIS-DISWDFEGRRLCVVGEGRDNFGVFI  144 (325)
T ss_dssp             EEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEE-EEEECTTSSEEEEEECCSSCSEEEE
T ss_pred             EEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEE-EEEECCCCCccceeeccccceEEEE
Confidence            456777642 3 345567889999888764332    11     1112234456 7889889875543 322 22 3344


Q ss_pred             c-CCC--eEEEcCCcCCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecc----ccc
Q 018474          120 T-EEG--VEAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG----FYF  191 (355)
Q Consensus       120 ~-~~g--~~~~~~~~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~----~~~  191 (355)
                      + .++  +..+......++++++.+++. +.++.+.                 .+.+..||..+.+...-...    ...
T Consensus       145 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~-----------------d~~v~~~d~~~~~~~~~~~~~~~~~~~  207 (325)
T d1pgua1         145 SWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGD-----------------DGSVVFYQGPPFKFSASDRTHHKQGSF  207 (325)
T ss_dssp             ETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEET-----------------TTEEEEEETTTBEEEEEECSSSCTTCC
T ss_pred             eecccccceeeeecccccccccccccccceEEEeec-----------------ccccccccccccccceecccccCCCCc
Confidence            4 345  455444346788899998874 3443322                 45677788766554432221    122


Q ss_pred             cccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEEC---CCCCEEEEeecCCchhhHhhhcch
Q 018474          192 ANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLA---PDGSFWIGLIKMNQTGVRAIQKCR  268 (355)
Q Consensus       192 pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d---~~G~lwv~~~~~~~~~~~~~~~~~  268 (355)
                      ...++++||+..++++....+.|..|+++...  ....+. .......++.+.   ++|+++++....            
T Consensus       208 v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~--~~~~l~-~~~~~v~~~~~s~~~~dg~~l~s~s~D------------  272 (325)
T d1pgua1         208 VRDVEFSPDSGEFVITVGSDRKISCFDGKSGE--FLKYIE-DDQEPVQGGIFALSWLDSQKFATVGAD------------  272 (325)
T ss_dssp             EEEEEECSTTCCEEEEEETTCCEEEEETTTCC--EEEECC-BTTBCCCSCEEEEEESSSSEEEEEETT------------
T ss_pred             cEEeeeccccceeccccccccceeeeeecccc--cccccc-ccccccccceeeeeccCCCEEEEEeCC------------
Confidence            46789999865566666667889999874322  122222 111112333332   678777665442            


Q ss_pred             hHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEe-CCEEEEeecCCCeEEEeeC
Q 018474          269 EKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-DGNLYLASLQSNFIGILPL  345 (355)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~~  345 (355)
                                              +.|..+|.++++.+..+.............+... ++.|.-++. ...|.++++
T Consensus       273 ------------------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~-dg~i~vwdl  325 (325)
T d1pgua1         273 ------------------------ATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSL-DGTLNFYEL  325 (325)
T ss_dssp             ------------------------SEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEET-TSCEEEEET
T ss_pred             ------------------------CeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEEC-CCEEEEEEC
Confidence                                    3577778767888888876443222222233333 456654554 577777664

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.47  E-value=3.4e-06  Score=77.04  Aligned_cols=204  Identities=14%  Similarity=0.076  Sum_probs=120.4

Q ss_pred             CCCCCCceEEE--eeCCCeEEEEec-CCEEEEEEcCCCeeEEeec--cCCCcccCeEECCCCC-EEEEeCCCc-E-----
Q 018474           49 GCVNHPEDVSV--VVSKGALYTATR-DGWVKYFILHNETLVNWKH--IDSQSLLGLTTTKDGG-VILCDNEKG-L-----  116 (355)
Q Consensus        49 ~~~~~p~~i~~--d~~~g~l~~~~~-~g~i~~~~~~~g~~~~~~~--~~~~p~~gl~~d~~g~-L~v~~~~~g-l-----  116 (355)
                      |....|.-...  .++++.||+... +++|.++|..+++......  .+..|+ |+++.++|+ +||+..... +     
T Consensus        67 gd~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gph-gi~~spdg~t~YV~~~~~~~v~~~~d  145 (441)
T d1qnia2          67 GDCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIH-GLRLQKVPKTNYVFCNAEFVIPQPND  145 (441)
T ss_dssp             CCBCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEE-EEEECCSSBCCEEEEEECSCEESSCS
T ss_pred             CcccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCcc-ceEEeccCCEEEEEeccCCcccccCc
Confidence            33455655443  245778999865 7899999999998776544  355799 999998886 688653321 1     


Q ss_pred             -------------EEEcC-CC--eEEEcCCcCCcccEEEccCC-cEEEEeCCCCCC--C-------ccccc---------
Q 018474          117 -------------LKVTE-EG--VEAIVPDASFTNDVIAASDG-TLYFTVASTKYT--P-------TDFYK---------  161 (355)
Q Consensus       117 -------------~~~~~-~g--~~~~~~~~~~~~~l~~d~dG-~ly~~d~~~~~~--~-------~~~~~---------  161 (355)
                                   ..++. +.  ..++... ..|.++.++++| .+|++.....-.  .       .++..         
T Consensus       146 g~~~~~~~~~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~  224 (441)
T d1qnia2         146 GTDFSLDNSYTMFTAIDAETMDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAA  224 (441)
T ss_dssp             SSCCCGGGEEEEEEEEETTTCSEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHH
T ss_pred             ccccccccccceEEeecCccceeeEEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEE
Confidence                         22332 22  2222211 579999999999 588876432110  0       00000         


Q ss_pred             -----cccccCCCCeEEEEeC-CCCeEEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCC------CCCcceeE
Q 018474          162 -----DMAEGKPYGQLRKYDP-KLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKG------DRAGILDA  229 (355)
Q Consensus       162 -----~~~~~~~~g~l~~~dp-~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~------~~~~~~~~  229 (355)
                           .... ....++..++. .+.++.........|.|++++|||+++|++......+..|+++.      .+......
T Consensus       225 ~~~dGk~~~-v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~  303 (441)
T d1qnia2         225 AVKAGNFKT-IGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDT  303 (441)
T ss_dssp             HHHTTCCBC-CTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGG
T ss_pred             EecCCCEEE-eCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceE
Confidence                 0000 01123444443 23333333445567999999999999999999999999999743      11221111


Q ss_pred             e-cccCCC-CcCceEECCCCCEEEEeec
Q 018474          230 F-IENLPG-GPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       230 ~-~~~~~g-~p~~i~~d~~G~lwv~~~~  255 (355)
                      + .+...+ .|-.-.+|++|+.|.+.+-
T Consensus       304 ~~~~~~~glgplh~~fd~~g~~yts~~~  331 (441)
T d1qnia2         304 IVAEPELGLGPLHTTFDGRGNAYTTLFI  331 (441)
T ss_dssp             EEECCBCCSCEEEEEECSSSEEEEEETT
T ss_pred             EEeecccccCcccceecCCceEEEcccc
Confidence            1 111111 2444578999999988754

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.41  E-value=0.00034  Score=61.40  Aligned_cols=231  Identities=12%  Similarity=0.056  Sum_probs=129.9

Q ss_pred             ceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeecc-CCCcccCeEECCCCCEEEEeCCCc-EEEEcC-CC--eEEEcC
Q 018474           55 EDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI-DSQSLLGLTTTKDGGVILCDNEKG-LLKVTE-EG--VEAIVP  129 (355)
Q Consensus        55 ~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~-~~~p~~gl~~d~~g~L~v~~~~~g-l~~~~~-~g--~~~~~~  129 (355)
                      .++++.+++..|.+++.+|.|..++..+++....... ...+. .+.+.+++...+.....+ +..++. +.  ......
T Consensus       125 ~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~  203 (388)
T d1erja_         125 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIY-SLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI  203 (388)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             EEEEECCCCCcceeccccccccccccccccccccccccccccc-ccccccccccccccccceeeeeeecccccccccccc
Confidence            4688886677788899999999999887766544332 23455 777877776544433444 445553 33  222222


Q ss_pred             CcCCcccEEEc-cCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeec-c-------ccccccEEEeCC
Q 018474          130 DASFTNDVIAA-SDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE-G-------FYFANGIALSKN  200 (355)
Q Consensus       130 ~~~~~~~l~~d-~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~-~-------~~~pngi~~~~d  200 (355)
                      . .....+.+. .++++.++.+.                 .+.+..||..+++...... .       ......++++++
T Consensus       204 ~-~~~~~~~~~~~~~~~l~~~~~-----------------d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~  265 (388)
T d1erja_         204 E-DGVTTVAVSPGDGKYIAAGSL-----------------DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD  265 (388)
T ss_dssp             S-SCEEEEEECSTTCCEEEEEET-----------------TSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTT
T ss_pred             c-cccccccccCCCCCeEEEEcC-----------------CCeEEEeecccCccceeeccccccccCCCCCEEEEEECCC
Confidence            1 233344444 36665554322                 4457777766654332211 1       112356889999


Q ss_pred             CCEEEEEeCCCCeEEEEEeCCCCCc-c--------eeEecccCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHH
Q 018474          201 EDFVVVCESWKFRCRRYWLKGDRAG-I--------LDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKW  271 (355)
Q Consensus       201 g~~l~v~~~~~~~i~~~~~~~~~~~-~--------~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~  271 (355)
                      ++.++.+ ...+.|..|++...... .        ..............+.++++|++.++...                
T Consensus       266 ~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~----------------  328 (388)
T d1erja_         266 GQSVVSG-SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK----------------  328 (388)
T ss_dssp             SSEEEEE-ETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEET----------------
T ss_pred             CCEEEEE-ECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeC----------------
Confidence            9966554 45678888887532110 0        00000011122344667788876655433                


Q ss_pred             HHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEe-------CCEEEEeecCCCeEEEee
Q 018474          272 ELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-------DGNLYLASLQSNFIGILP  344 (355)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-------~g~L~v~~~~~~~i~~~~  344 (355)
                                          .+.|..+|.++++.+..+..+.+.    ++.+...       ++++.++.-....|...+
T Consensus       329 --------------------dg~i~vwd~~~~~~~~~l~~H~~~----V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~  384 (388)
T d1erja_         329 --------------------DRGVLFWDKKSGNPLLMLQGHRNS----VISVAVANGSSLGPEYNVFATGSGDCKARIWK  384 (388)
T ss_dssp             --------------------TSEEEEEETTTCCEEEEEECCSSC----EEEEEECSSCTTCTTCEEEEEEETTSEEEEEE
T ss_pred             --------------------CCEEEEEECCCCcEEEEEeCCCCC----EEEEEEecCcccCCCCCEEEEEeCCCEEEEEe
Confidence                                146888887688988888776653    4444321       466666555566776665


Q ss_pred             C
Q 018474          345 L  345 (355)
Q Consensus       345 ~  345 (355)
                      +
T Consensus       385 ~  385 (388)
T d1erja_         385 Y  385 (388)
T ss_dssp             E
T ss_pred             e
Confidence            5

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.37  E-value=1.2e-05  Score=70.20  Aligned_cols=131  Identities=12%  Similarity=0.054  Sum_probs=90.0

Q ss_pred             EeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCE-EEEeCCCc--EEEEcC-CC-eEEEcCCcCC
Q 018474           59 VVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGV-ILCDNEKG--LLKVTE-EG-VEAIVPDASF  133 (355)
Q Consensus        59 ~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L-~v~~~~~g--l~~~~~-~g-~~~~~~~~~~  133 (355)
                      +.|.+|.+++...+|.|+.++.++++..++. ...++. ++++.+||+. +++....|  ++.++. +| .+.+......
T Consensus        10 fSP~dG~~~a~~~~g~v~v~d~~~~~~~~~~-~~~~v~-~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~~   87 (360)
T d1k32a3          10 FSPLDGDLIAFVSRGQAFIQDVSGTYVLKVP-EPLRIR-YVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGN   87 (360)
T ss_dssp             EEECGGGCEEEEETTEEEEECTTSSBEEECS-CCSCEE-EEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCCS
T ss_pred             ccCCCCCEEEEEECCeEEEEECCCCcEEEcc-CCCCEE-EEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCCce
Confidence            4554566666666789999999888877764 345677 8999999974 44433333  555563 56 6666555577


Q ss_pred             cccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeec-cccccccEEEeCCCCEEEEEe
Q 018474          134 TNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHE-GFYFANGIALSKNEDFVVVCE  208 (355)
Q Consensus       134 ~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~-~~~~pngi~~~~dg~~l~v~~  208 (355)
                      +..++++|||+..++...                 .+.++.++..+++...... .......++++|||+.+.++.
T Consensus        88 v~~~~~spdg~~l~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~  146 (360)
T d1k32a3          88 VFAMGVDRNGKFAVVAND-----------------RFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGF  146 (360)
T ss_dssp             EEEEEECTTSSEEEEEET-----------------TSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEE
T ss_pred             EEeeeecccccccceecc-----------------ccccccccccccceeeeeecccccccchhhccceeeeeeec
Confidence            889999999976554332                 4578888887777654433 334456799999999877654

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.36  E-value=0.0004  Score=58.28  Aligned_cols=154  Identities=7%  Similarity=0.035  Sum_probs=96.7

Q ss_pred             CCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeec-cCCCcccCeEECCCCCEEEEeCCCc-EEEEcC-CC--
Q 018474           49 GCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH-IDSQSLLGLTTTKDGGVILCDNEKG-LLKVTE-EG--  123 (355)
Q Consensus        49 ~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~-~~~~p~~gl~~d~~g~L~v~~~~~g-l~~~~~-~g--  123 (355)
                      |.-..-.+|++.|++..|.+++.||.|..+|..+++...... ....+. .+++++++.+.+.....+ +...+. ..  
T Consensus        15 GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (317)
T d1vyhc1          15 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQ-DISFDHSGKLLASCSADMTIKLWDFQGFEC   93 (317)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEE-EEEECTTSSEEEEEETTSCCCEEETTSSCE
T ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEE-EEeeeccccccccccccccccccccccccc
Confidence            444455788999777778888899999999988876543322 234466 888999988766554433 334442 22  


Q ss_pred             eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEe-eccccccccEEEeCCCC
Q 018474          124 VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL-HEGFYFANGIALSKNED  202 (355)
Q Consensus       124 ~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~-~~~~~~pngi~~~~dg~  202 (355)
                      ...+.........+.+.+++...++...                 .+.+..||..+++.... .........++++++++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (317)
T d1vyhc1          94 IRTMHGHDHNVSSVSIMPNGDHIVSASR-----------------DKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT  156 (317)
T ss_dssp             EECCCCCSSCEEEEEECSSSSEEEEEET-----------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSS
T ss_pred             ccccccccccceeeeccCCCceEEeecc-----------------CcceeEeecccceeeeEEccCCCcceeeecccCCC
Confidence            2222222256667788888865554322                 45677778766654332 22233456788999998


Q ss_pred             EEEEEeCCCCeEEEEEeCC
Q 018474          203 FVVVCESWKFRCRRYWLKG  221 (355)
Q Consensus       203 ~l~v~~~~~~~i~~~~~~~  221 (355)
                      .+..+ ...+.|..++...
T Consensus       157 ~l~~~-~~d~~v~~~~~~~  174 (317)
T d1vyhc1         157 LIASC-SNDQTVRVWVVAT  174 (317)
T ss_dssp             EEEEE-ETTSCEEEEETTT
T ss_pred             EEEEE-eCCCeEEEEeecc
Confidence            55444 4567788887643

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.36  E-value=0.00012  Score=63.56  Aligned_cols=143  Identities=9%  Similarity=-0.086  Sum_probs=90.4

Q ss_pred             eeCCCeEEEEec-----CCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCC----------CcEEEEcC-C
Q 018474           60 VVSKGALYTATR-----DGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNE----------KGLLKVTE-E  122 (355)
Q Consensus        60 d~~~g~l~~~~~-----~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~----------~gl~~~~~-~  122 (355)
                      .|++..+|+...     .+.++.+|..+++.......+ ... ++++.+||+ ||+++..          +.+..+|. +
T Consensus        10 spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g-~~~-~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t   87 (355)
T d2bbkh_          10 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG-FLP-NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT   87 (355)
T ss_dssp             CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC-SSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred             CCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECC-CCC-ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCC
Confidence            346778888753     457999999998865544433 344 799999997 7876531          23666673 5


Q ss_pred             C--eEEEcCC-------cCCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecc----
Q 018474          123 G--VEAIVPD-------ASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG----  188 (355)
Q Consensus       123 g--~~~~~~~-------~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~----  188 (355)
                      +  ...+...       ...++.++++++| .+++.+...                ...+..++..+++.......    
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~  151 (355)
T d2bbkh_          88 LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSP----------------APAVGVVDLEGKAFKRMLDVPDCY  151 (355)
T ss_dssp             CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSS----------------SCEEEEEETTTTEEEEEEECCSEE
T ss_pred             CCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCC----------------CceeeeeecCCCcEeeEEecCCcc
Confidence            5  3333211       1568889999998 577765431                23455666666654322111    


Q ss_pred             ----ccccccEEEeCCCCEEEEEeCCCCeEEEEEeC
Q 018474          189 ----FYFANGIALSKNEDFVVVCESWKFRCRRYWLK  220 (355)
Q Consensus       189 ----~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~  220 (355)
                          ......+++++|++.+++.......+..++..
T Consensus       152 ~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~  187 (355)
T d2bbkh_         152 HIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTE  187 (355)
T ss_dssp             EEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECC
T ss_pred             eEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecc
Confidence                12234578999999998887777777776654

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.27  E-value=0.00031  Score=63.40  Aligned_cols=158  Identities=11%  Similarity=0.038  Sum_probs=96.2

Q ss_pred             eEecCCCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEee--ccCCCcccCeEEC----CCCC-EEEEeCCCcE
Q 018474           44 TKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWK--HIDSQSLLGLTTT----KDGG-VILCDNEKGL  116 (355)
Q Consensus        44 ~~~~~~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~--~~~~~p~~gl~~d----~~g~-L~v~~~~~gl  116 (355)
                      ..+..+  ..|.++++.|++..+|+++.+|.+..+|..+++.....  ..+..+. +++++    +||+ |+++....+.
T Consensus        56 ~~l~~g--~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~-~~~~s~~~spDG~~l~v~~~~~~~  132 (426)
T d1hzua2          56 KVIDTG--YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEAR-SVESSKFKGYEDRYTIAGAYWPPQ  132 (426)
T ss_dssp             EEEECC--SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEE-EEEECCSTTCTTTEEEEEEEESSE
T ss_pred             EEEeCC--CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCc-ceEEeeeecCCCCEEEEeecCCCe
Confidence            345544  57999999988888999999999999999888644322  2223344 55444    6786 6777655444


Q ss_pred             E-EEc-CCC--eEEEcCCc-----------CCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCC
Q 018474          117 L-KVT-EEG--VEAIVPDA-----------SFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLK  180 (355)
Q Consensus       117 ~-~~~-~~g--~~~~~~~~-----------~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~  180 (355)
                      + .++ .++  ...+....           .....++.++++ .+|++...                 .+.+..++....
T Consensus       133 v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~-----------------~~~i~~~~~~~~  195 (426)
T d1hzua2         133 FAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE-----------------TGKVLLVNYKDI  195 (426)
T ss_dssp             EEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT-----------------TTEEEEEECSSS
T ss_pred             EEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCC-----------------CCeEEEEEeccc
Confidence            4 445 344  33332221           122334455555 34444322                 334444433222


Q ss_pred             e--EEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCC
Q 018474          181 E--TTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKG  221 (355)
Q Consensus       181 ~--~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~  221 (355)
                      .  ..........+.+++++|+++.++++....+.+..++...
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~  238 (426)
T d1hzua2         196 DNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKD  238 (426)
T ss_dssp             SSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTT
T ss_pred             cceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeeccc
Confidence            1  1112233456889999999999999998888898888754

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.26  E-value=0.00011  Score=63.84  Aligned_cols=243  Identities=12%  Similarity=0.034  Sum_probs=127.9

Q ss_pred             CCCceEEEeeCCCeEEEEecCCE-EEEEEcCCCe---eEEeecc-CCCcccCeEECC--CCCEEEEeCCCcEEEE-c-CC
Q 018474           52 NHPEDVSVVVSKGALYTATRDGW-VKYFILHNET---LVNWKHI-DSQSLLGLTTTK--DGGVILCDNEKGLLKV-T-EE  122 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~~g~-i~~~~~~~g~---~~~~~~~-~~~p~~gl~~d~--~g~L~v~~~~~gl~~~-~-~~  122 (355)
                      ..|.++++++.+..+.+++.+.. |+.++....+   ...+... ..... .+++.+  +|+++++...+|-+++ + ..
T Consensus        18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~-~v~fsP~~~g~~lasgs~Dg~i~iWd~~~   96 (325)
T d1pgua1          18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVT-TVKFSPIKGSQYLCSGDESGKVIVWGWTF   96 (325)
T ss_dssp             TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEE-EEEECSSTTCCEEEEEETTSEEEEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEE-EEEEeeCCCCCEEEEEeCCCCEEEeeecC
Confidence            45788999977777666654443 3334432222   2222211 22355 788864  5666654444554444 3 11


Q ss_pred             C-----eEE-----EcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEE-Eeeccccc
Q 018474          123 G-----VEA-----IVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETT-VLHEGFYF  191 (355)
Q Consensus       123 g-----~~~-----~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~-~~~~~~~~  191 (355)
                      +     .+.     +......+.+++++++|+..++.+..               ..+.+..++.++++.. .+......
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~h~~~  161 (325)
T d1pgua1          97 DKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEG---------------RDNFGVFISWDSGNSLGEVSGHSQR  161 (325)
T ss_dssp             EGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECC---------------SSCSEEEEETTTCCEEEECCSCSSC
T ss_pred             CcceeeeecccccccccccCcEEEEEECCCCCccceeecc---------------ccceEEEEeecccccceeeeecccc
Confidence            1     111     11111457789999999755543220               1223455555555432 22222233


Q ss_pred             cccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecc--cCCCCcCceEECCC-CCEEEEeecCCchhhHhhhcch
Q 018474          192 ANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIE--NLPGGPDNINLAPD-GSFWIGLIKMNQTGVRAIQKCR  268 (355)
Q Consensus       192 pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~g~p~~i~~d~~-G~lwv~~~~~~~~~~~~~~~~~  268 (355)
                      -+.+++++++..++++....+.+..|+....+  .......  ........+.+.++ |++.++....            
T Consensus       162 v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~--~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d------------  227 (325)
T d1pgua1         162 INACHLKQSRPMRSMTVGDDGSVVFYQGPPFK--FSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSD------------  227 (325)
T ss_dssp             EEEEEECSSSSCEEEEEETTTEEEEEETTTBE--EEEEECSSSCTTCCEEEEEECSTTCCEEEEEETT------------
T ss_pred             cccccccccccceEEEeecccccccccccccc--cceecccccCCCCccEEeeeccccceeccccccc------------
Confidence            46789999988666666666778888763221  1111111  11222344667776 4665554331            


Q ss_pred             hHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeCCEEEEeecCCCeEEEeeCCCC
Q 018474          269 EKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLDGP  348 (355)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~~~  348 (355)
                                              +.|..+|.++++.+..+..+...+...+.+....++++++..-....|...++.+.
T Consensus       228 ------------------------~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~  283 (325)
T d1pgua1         228 ------------------------RKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTS  283 (325)
T ss_dssp             ------------------------CCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTT
T ss_pred             ------------------------cceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCC
Confidence                                    34777787678888887665544333344444445544444444667777777653

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.23  E-value=0.00056  Score=59.95  Aligned_cols=184  Identities=13%  Similarity=0.047  Sum_probs=102.1

Q ss_pred             CCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeec-------------------cCCCcccCeEECCCCCEEEEeC
Q 018474           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH-------------------IDSQSLLGLTTTKDGGVILCDN  112 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~-------------------~~~~p~~gl~~d~~g~L~v~~~  112 (355)
                      ..-.++++++++..|.++ .++.|..++..+++......                   ....+. ++++.++|++.++..
T Consensus        63 ~~V~~l~fs~dg~~lasg-~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~-~l~~s~~~~~l~s~~  140 (388)
T d1erja_          63 SVVCCVKFSNDGEYLATG-CNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIR-SVCFSPDGKFLATGA  140 (388)
T ss_dssp             SCCCEEEECTTSSEEEEE-CBSCEEEEETTTCCEEEEECC-----------------CCCCBEE-EEEECTTSSEEEEEE
T ss_pred             CcEEEEEECCCCCEEEEE-eCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEE-EEEECCCCCcceecc
Confidence            345688999655555555 48889999987775432111                   011245 788989998766554


Q ss_pred             CCcEEEE-c-CCC--eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecc
Q 018474          113 EKGLLKV-T-EEG--VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG  188 (355)
Q Consensus       113 ~~gl~~~-~-~~g--~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~  188 (355)
                      .+|.+++ + ..+  ..........+..+...+++...++...                 .+.+..||..+.........
T Consensus       141 ~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~-----------------~~~i~~~d~~~~~~~~~~~~  203 (388)
T d1erja_         141 EDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG-----------------DRTVRIWDLRTGQCSLTLSI  203 (388)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET-----------------TSEEEEEETTTTEEEEEEEC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccc-----------------ceeeeeeecccccccccccc
Confidence            5554444 4 345  3333333356778888888755544322                 45678888877655444333


Q ss_pred             ccccccEEEeC-CCCEEEEEeCCCCeEEEEEeCCCCC-cceeEecc---cCCCCcCceEECCCCCEEEEeec
Q 018474          189 FYFANGIALSK-NEDFVVVCESWKFRCRRYWLKGDRA-GILDAFIE---NLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       189 ~~~pngi~~~~-dg~~l~v~~~~~~~i~~~~~~~~~~-~~~~~~~~---~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      ......+++.+ +++.+ ++....+.|..++...... ........   ...+....+.++++|++.++...
T Consensus       204 ~~~~~~~~~~~~~~~~l-~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~  274 (388)
T d1erja_         204 EDGVTTVAVSPGDGKYI-AAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL  274 (388)
T ss_dssp             SSCEEEEEECSTTCCEE-EEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET
T ss_pred             ccccccccccCCCCCeE-EEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEEC
Confidence            33333444444 66644 4444567788888753221 11110000   11112344678888887665544

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=98.20  E-value=2.9e-05  Score=71.33  Aligned_cols=117  Identities=13%  Similarity=0.256  Sum_probs=76.4

Q ss_pred             eEEEcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecccc---cc------cc
Q 018474          124 VEAIVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFY---FA------NG  194 (355)
Q Consensus       124 ~~~~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~---~p------ng  194 (355)
                      +++++.....|.+|++.+||+|||+...                 .|.|+++++++++.+.+.....   ..      -|
T Consensus        19 ~~~ia~~L~~P~~la~~pdg~llVter~-----------------~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLg   81 (450)
T d1crua_          19 KKVILSNLNKPHALLWGPDNQIWLTERA-----------------TGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLG   81 (450)
T ss_dssp             EEEEECCCSSEEEEEECTTSCEEEEETT-----------------TCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEE
T ss_pred             EEEEECCCCCceEEEEeCCCeEEEEEec-----------------CCEEEEEECCCCcEeecccCCccccccCCCCceee
Confidence            5667776789999999999999999643                 5789999998887766543211   11      36


Q ss_pred             EEEeCC---CCEEEEEeCC------------CCeEEEEEeCCCC--CcceeEecccCCC----CcCceEECCCCCEEEEe
Q 018474          195 IALSKN---EDFVVVCESW------------KFRCRRYWLKGDR--AGILDAFIENLPG----GPDNINLAPDGSFWIGL  253 (355)
Q Consensus       195 i~~~~d---g~~l~v~~~~------------~~~i~~~~~~~~~--~~~~~~~~~~~~g----~p~~i~~d~~G~lwv~~  253 (355)
                      |+++||   ...+|++.+.            ...+.++..+...  ....+.+....+.    .-..|++++||.||++.
T Consensus        82 ia~~Pdf~~n~~iYvsyt~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~  161 (450)
T d1crua_          82 FAFHPDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTI  161 (450)
T ss_dssp             EEECTTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEE
T ss_pred             EEeCCCCccCCEEEEEEecCCCCCcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEe
Confidence            999985   4578987641            1135566654432  2222223323321    12348899999999998


Q ss_pred             ecCC
Q 018474          254 IKMN  257 (355)
Q Consensus       254 ~~~~  257 (355)
                      ....
T Consensus       162 Gd~~  165 (450)
T d1crua_         162 GDQG  165 (450)
T ss_dssp             CCTT
T ss_pred             cCCC
Confidence            7644

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.11  E-value=0.00042  Score=60.66  Aligned_cols=184  Identities=8%  Similarity=-0.016  Sum_probs=102.1

Q ss_pred             CCCCceEEEeeCCCeEEEE-ecCCEEEEEEcCCCeeEEeecc-----CCC--cccCeEECCCCCEEEEeCCCcEEEEcC-
Q 018474           51 VNHPEDVSVVVSKGALYTA-TRDGWVKYFILHNETLVNWKHI-----DSQ--SLLGLTTTKDGGVILCDNEKGLLKVTE-  121 (355)
Q Consensus        51 ~~~p~~i~~d~~~g~l~~~-~~~g~i~~~~~~~g~~~~~~~~-----~~~--p~~gl~~d~~g~L~v~~~~~gl~~~~~-  121 (355)
                      ...|.++++.+.+..+|++ ..+|.+..++..+++.......     ...  +. .+..+.++.+......+.++.++. 
T Consensus       164 ~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~  242 (373)
T d2madh_         164 LSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQ-PAQANKSGRIVWPVYSGKILQADIS  242 (373)
T ss_pred             eccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceee-eEEECCCceEEEecCCceEEEEEcC
Confidence            3557778887666666654 4578888888766654432211     111  22 344455554433333334555542 


Q ss_pred             CC-eEEEcC-------------CcCCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee
Q 018474          122 EG-VEAIVP-------------DASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH  186 (355)
Q Consensus       122 ~g-~~~~~~-------------~~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~  186 (355)
                      .+ ......             .......++.+++| .+|+.....        ..+......+.+..+|..+++.....
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--------~~~~~~~~~~~v~~~d~~t~~~~~~~  314 (373)
T d2madh_         243 AAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQ--------SAWKLHAAAKEVTSVTGLVGQTSSQI  314 (373)
T ss_pred             CCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCC--------ceEEeecCCCeEEEEECCCCcEEEEe
Confidence            22 211110             01234446677777 455443221        01111222457888998888765444


Q ss_pred             ccccccccEEEeCCCCE-EEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCC
Q 018474          187 EGFYFANGIALSKNEDF-VVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPD  246 (355)
Q Consensus       187 ~~~~~pngi~~~~dg~~-l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~  246 (355)
                      .....+.+++++|||+. +|++....+.|..||....+  ....+ ......|..+.+.++
T Consensus       315 ~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~--~~~~~-~~~g~~P~~l~~~~~  372 (373)
T d2madh_         315 SLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD--QDQST-VELGSGPQVLSVMNE  372 (373)
T ss_pred             cCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCC--EEEEE-CCCCCCCcEEEEecC
Confidence            44566889999999986 56777778889999985432  12222 233345788877654

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.10  E-value=5e-06  Score=75.88  Aligned_cols=115  Identities=8%  Similarity=-0.024  Sum_probs=69.9

Q ss_pred             CCCC-EEEEeCC-CcEEEEc-CCC-e-EEEcCC-cCCcccEEEccCC-cEEEEeCCC-CCCCccccccccccCCCCeEEE
Q 018474          103 KDGG-VILCDNE-KGLLKVT-EEG-V-EAIVPD-ASFTNDVIAASDG-TLYFTVAST-KYTPTDFYKDMAEGKPYGQLRK  174 (355)
Q Consensus       103 ~~g~-L~v~~~~-~gl~~~~-~~g-~-~~~~~~-~~~~~~l~~d~dG-~ly~~d~~~-~~~~~~~~~~~~~~~~~g~l~~  174 (355)
                      +||+ |||++.. ..+.+++ .++ . +.+..+ ...|++++++++| ++|++.... ..........+.+......+..
T Consensus        81 pDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~  160 (441)
T d1qnia2          81 YDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTA  160 (441)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEE
T ss_pred             CCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEe
Confidence            5675 8999866 4577888 465 3 333222 3789999999998 678765321 0000000001111111234557


Q ss_pred             EeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEE
Q 018474          175 YDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRY  217 (355)
Q Consensus       175 ~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~  217 (355)
                      +|+.+.+..........|.+++++|||+++|++....+.+..+
T Consensus       161 iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~i  203 (441)
T d1qnia2         161 IDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDL  203 (441)
T ss_dssp             EETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSH
T ss_pred             ecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEE
Confidence            8988877654443445789999999999999998765554433

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.01  E-value=0.00038  Score=61.37  Aligned_cols=180  Identities=9%  Similarity=-0.029  Sum_probs=101.4

Q ss_pred             CCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeecc---CCCcccCeEECCCCCEEEEeCCCcEE---EEcC-CCe
Q 018474           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI---DSQSLLGLTTTKDGGVILCDNEKGLL---KVTE-EGV  124 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~---~~~p~~gl~~d~~g~L~v~~~~~gl~---~~~~-~g~  124 (355)
                      ..-.+|++.|++..|.+++.|+.|..++..++..+.....   ...+. ++.++++++.+++....+.+   .++. ...
T Consensus        52 ~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~-~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~  130 (371)
T d1k8kc_          52 GQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAAR-CVRWAPNEKKFAVGSGSRVISICYFEQENDW  130 (371)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEE-EEEECTTSSEEEEEETTSSEEEEEEETTTTE
T ss_pred             CCEEEEEECCCCCEEEEEECCCeEEEEeeccccccccccccccccccc-ccccccccccceeecccCcceeeeeeccccc
Confidence            4458899997777788888899999999877765433221   23466 88999999865544444433   3333 222


Q ss_pred             EE---EcCC-cCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCC------------------eE
Q 018474          125 EA---IVPD-ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLK------------------ET  182 (355)
Q Consensus       125 ~~---~~~~-~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~------------------~~  182 (355)
                      ..   .... ...+.+++++|+|++.++.+.                 .+.+..||...+                  +.
T Consensus       131 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~-----------------D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (371)
T d1k8kc_         131 WVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC-----------------DFKCRIFSAYIKEVEERPAPTPWGSKMPFGEL  193 (371)
T ss_dssp             EEEEEECTTCCSCEEEEEECTTSSEEEEEET-----------------TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCE
T ss_pred             ccccccccccccccccccccccccceecccc-----------------CcEEEEEeeccCccccccccccccccccceee
Confidence            21   1111 156778889999977665332                 222333332211                  11


Q ss_pred             -EEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEe
Q 018474          183 -TVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGL  253 (355)
Q Consensus       183 -~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~  253 (355)
                       ..........++++++||++.++.+. ..+.|..+++....  ....+. ........+.+.++|.+.++.
T Consensus       194 ~~~~~~~~~~v~~~~~s~~g~~l~s~~-~d~~i~iwd~~~~~--~~~~~~-~~~~~v~s~~fs~d~~~la~g  261 (371)
T d1k8kc_         194 MFESSSSCGWVHGVCFSANGSRVAWVS-HDSTVCLADADKKM--AVATLA-SETLPLLAVTFITESSLVAAG  261 (371)
T ss_dssp             EEECCCCSSCEEEEEECSSSSEEEEEE-TTTEEEEEEGGGTT--EEEEEE-CSSCCEEEEEEEETTEEEEEE
T ss_pred             eeeccCccCcEEEEEeecccccccccc-cCCcceEEeeeccc--ceeeee-cccccceeeeecCCCCEEEEE
Confidence             11111122346789999999766554 56789889875432  122221 111112345666677665544

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.01  E-value=0.00041  Score=61.06  Aligned_cols=70  Identities=10%  Similarity=0.028  Sum_probs=48.3

Q ss_pred             CeEEEEeCCCCeEEEeeccccccccEEEeCCCC-EEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEE
Q 018474          170 GQLRKYDPKLKETTVLHEGFYFANGIALSKNED-FVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINL  243 (355)
Q Consensus       170 g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~-~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~  243 (355)
                      ..++.+|.++++..........+.+++++|||+ .+|++....+.|..||....+.  .. .+ .++..|..+.+
T Consensus       294 ~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~--~~-~i-~~g~~P~~l~~  364 (368)
T d1mdah_         294 ENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQD--QS-SV-ELDKGPESLSV  364 (368)
T ss_dssp             EEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEE--EE-EC-CCCSCCCEEEC
T ss_pred             ceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCE--EE-EE-ECCCCCCEEEE
Confidence            458889998887544333345688999999997 5788888888999999754321  11 12 23445887765

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.00  E-value=0.00021  Score=62.98  Aligned_cols=67  Identities=6%  Similarity=-0.063  Sum_probs=48.0

Q ss_pred             eEEEeeCCCeEEEEec----------CCEEEEEEcCCCeeEEeec--------cCCCcccCeEECCCCC-EEEEeCC-Cc
Q 018474           56 DVSVVVSKGALYTATR----------DGWVKYFILHNETLVNWKH--------IDSQSLLGLTTTKDGG-VILCDNE-KG  115 (355)
Q Consensus        56 ~i~~d~~~g~l~~~~~----------~g~i~~~~~~~g~~~~~~~--------~~~~p~~gl~~d~~g~-L~v~~~~-~g  115 (355)
                      .+++.+++..+|+.+.          ++.|..+|..+++......        .+..|. ++++.+||+ ||++... +.
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~-~~a~SpDGk~l~va~~~~~~  147 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVH-IIGNCASSACLLFFLFGSSA  147 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTT-SEEECTTSSCEEEEECSSSC
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCcc-ceEECCCCCEEEEEeCCCCe
Confidence            6888877888998652          4568999998887643321        234588 999999996 8888755 45


Q ss_pred             EEEEc-CCC
Q 018474          116 LLKVT-EEG  123 (355)
Q Consensus       116 l~~~~-~~g  123 (355)
                      +..++ .++
T Consensus       148 v~~~d~~~~  156 (368)
T d1mdah_         148 AAGLSVPGA  156 (368)
T ss_dssp             EEEEEETTT
T ss_pred             EEEEECCCC
Confidence            77777 455

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.92  E-value=0.004  Score=51.75  Aligned_cols=229  Identities=14%  Similarity=0.122  Sum_probs=117.8

Q ss_pred             CCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeec-cCCCcccCeEECCCCCEEEEeCCCcEE-EEc-CCC--eEE
Q 018474           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH-IDSQSLLGLTTTKDGGVILCDNEKGLL-KVT-EEG--VEA  126 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~-~~~~p~~gl~~d~~g~L~v~~~~~gl~-~~~-~~g--~~~  126 (355)
                      ....++++.+.+..+..+..++.+...+....+...... ...... .+.+.++++..++....+.+ .++ .++  ...
T Consensus        60 ~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  138 (317)
T d1vyhc1          60 DSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVS-SVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKT  138 (317)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEE-EEEECSSSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             CcEEEEeeecccccccccccccccccccccccccccccccccccce-eeeccCCCceEEeeccCcceeEeecccceeeeE
Confidence            344667777555555566666666666664444332221 123344 67777888765554454544 445 355  454


Q ss_pred             EcCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecc------------------
Q 018474          127 IVPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG------------------  188 (355)
Q Consensus       127 ~~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~------------------  188 (355)
                      +......+..+++++++.+.++.+.                 .+.+..++..+++.......                  
T Consensus       139 ~~~~~~~~~~~~~~~~~~~l~~~~~-----------------d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  201 (317)
T d1vyhc1         139 FTGHREWVRMVRPNQDGTLIASCSN-----------------DQTVRVWVVATKECKAELREHRHVVECISWAPESSYSS  201 (317)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEET-----------------TSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGG
T ss_pred             EccCCCcceeeecccCCCEEEEEeC-----------------CCeEEEEeeccceeeEEEecCCCCceEEEEeeccccce
Confidence            5444456777888898877665332                 23344444443332211110                  


Q ss_pred             ---ccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeecCCchhhHhhh
Q 018474          189 ---FYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQ  265 (355)
Q Consensus       189 ---~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~  265 (355)
                         ...........++. ++++....+.|..++++...  ....+. ........+.+.++|++.++....         
T Consensus       202 ~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~~~~~~~~~--~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d---------  268 (317)
T d1vyhc1         202 ISEATGSETKKSGKPGP-FLLSGSRDKTIKMWDVSTGM--CLMTLV-GHDNWVRGVLFHSGGKFILSCADD---------  268 (317)
T ss_dssp             GGGCCSCC-------CC-EEEEEETTSEEEEEETTTTE--EEEEEE-CCSSCEEEEEECSSSSCEEEEETT---------
T ss_pred             eeccccceeeeeccCCc-eeEeccCCCEEEEEECCCCc--EEEEEe-CCCCCEEEEEECCCCCEEEEEECC---------
Confidence               00111222334444 34444456778888864321  112222 222334567788888876655431         


Q ss_pred             cchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeC-CEEEEeecCCCeEEE
Q 018474          266 KCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFD-GNLYLASLQSNFIGI  342 (355)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~-g~L~v~~~~~~~i~~  342 (355)
                                                 +.|..+|.++++.+..+..+.+    .++.+.... +++.++......|..
T Consensus       269 ---------------------------g~i~iwd~~~~~~~~~~~~h~~----~V~~~~~s~~~~~l~s~s~Dg~i~i  315 (317)
T d1vyhc1         269 ---------------------------KTLRVWDYKNKRCMKTLNAHEH----FVTSLDFHKTAPYVVTGSVDQTVKV  315 (317)
T ss_dssp             ---------------------------TEEEEECCTTSCCCEEEECCSS----CEEEEEECSSSSCEEEEETTSEEEE
T ss_pred             ---------------------------CeEEEEECCCCcEEEEEcCCCC----CEEEEEEcCCCCEEEEEeCCCeEEE
Confidence                                       3577788757888888876554    456666543 443333333445544

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.90  E-value=0.00041  Score=59.22  Aligned_cols=143  Identities=10%  Similarity=0.051  Sum_probs=89.9

Q ss_pred             eEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeec-cCCCcccCeEECCCCCEEEEeCCCc-EEEEc-CCC--eEEEcCC
Q 018474           56 DVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH-IDSQSLLGLTTTKDGGVILCDNEKG-LLKVT-EEG--VEAIVPD  130 (355)
Q Consensus        56 ~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~-~~~~p~~gl~~d~~g~L~v~~~~~g-l~~~~-~~g--~~~~~~~  130 (355)
                      .....+....+..+..++.|..+|..+++...... ....+. +++++++|+++++....+ +..++ ...  ...+...
T Consensus       189 ~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~-~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~  267 (340)
T d1tbga_         189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDIN-AICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD  267 (340)
T ss_dssp             EEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEE-EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT
T ss_pred             eeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeE-EEEECCCCCEEEEEeCCCeEEEEeecccccccccccc
Confidence            34444344555667789999999988887654332 234566 899999998766544445 44555 333  3333322


Q ss_pred             --cCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecc-ccccccEEEeCCCCEEEEE
Q 018474          131 --ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG-FYFANGIALSKNEDFVVVC  207 (355)
Q Consensus       131 --~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~-~~~pngi~~~~dg~~l~v~  207 (355)
                        ...+..++++++|++.++.+.                 .|.+..||..+++......+ ......++++||++.++.+
T Consensus       268 ~~~~~i~~~~~s~~~~~l~~g~~-----------------dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~  330 (340)
T d1tbga_         268 NIICGITSVSFSKSGRLLLAGYD-----------------DFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG  330 (340)
T ss_dssp             TCCSCEEEEEECSSSCEEEEEET-----------------TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEE
T ss_pred             cccCceEEEEECCCCCEEEEEEC-----------------CCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEE
Confidence              255788999999987766433                 56788899877765433332 2334678999999855444


Q ss_pred             eCCCCeEEEE
Q 018474          208 ESWKFRCRRY  217 (355)
Q Consensus       208 ~~~~~~i~~~  217 (355)
                       ...+.|..|
T Consensus       331 -s~Dg~v~iW  339 (340)
T d1tbga_         331 -SWDSFLKIW  339 (340)
T ss_dssp             -ETTSCEEEE
T ss_pred             -ccCCEEEEe
Confidence             445566554

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.87  E-value=0.0017  Score=55.90  Aligned_cols=199  Identities=15%  Similarity=0.067  Sum_probs=104.3

Q ss_pred             CCCceEEEeeCCCeEEEEec--CCEEEEEEcCCCeeEEeeccCCC--------cccCeEECCCCC-EEEEeCCCc-EEEE
Q 018474           52 NHPEDVSVVVSKGALYTATR--DGWVKYFILHNETLVNWKHIDSQ--------SLLGLTTTKDGG-VILCDNEKG-LLKV  119 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~--~g~i~~~~~~~g~~~~~~~~~~~--------p~~gl~~d~~g~-L~v~~~~~g-l~~~  119 (355)
                      ..|..+++.++++.+++...  +..+..++..+++..........        .. .+++.++|. +++.....+ +..+
T Consensus       106 ~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~dg~~~~v~~~~~~~~~~~  184 (355)
T d2bbkh_         106 TYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDT-FFMHCRDGSLAKVAFGTEGTPEIT  184 (355)
T ss_dssp             CCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTE-EEEEETTSCEEEEECCSSSCCEEE
T ss_pred             CCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcc-eEEEcCCCCEEEEEecCCCeEEEE
Confidence            46889999987888888754  45677788877765443222211        12 233434443 222222211 1111


Q ss_pred             c-CCCeEEEcCCcCCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecc---------
Q 018474          120 T-EEGVEAIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG---------  188 (355)
Q Consensus       120 ~-~~g~~~~~~~~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~---------  188 (355)
                      + ... .  .......+.....+++ .+.++..                  .+.++.++..+++...+...         
T Consensus       185 ~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  243 (355)
T d2bbkh_         185 HTEVF-H--PEDEFLINHPAYSQKAGRLVWPTY------------------TGKIHQIDLSSGDAKFLPAVEALTEAERA  243 (355)
T ss_dssp             ECCCC-S--CTTSCBCSCCEEETTTTEEEEEBT------------------TSEEEEEECTTSSCEECCCEESSCHHHHH
T ss_pred             ecccc-c--ceecceeeeccccCCCCeEEEecC------------------CCeEEEEecCCCcEEEEeccCCcccceEe
Confidence            1 100 0  0000222333444333 3333221                  34566666555544322110         


Q ss_pred             ----ccccccEEEeCCCCEEEEEeCCC---------CeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCC-EEEEee
Q 018474          189 ----FYFANGIALSKNEDFVVVCESWK---------FRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGS-FWIGLI  254 (355)
Q Consensus       189 ----~~~pngi~~~~dg~~l~v~~~~~---------~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~  254 (355)
                          ......+++++|++.+|+.....         ..|..++....+.  ...+  .....|..+++++||+ +++++.
T Consensus       244 ~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~--~~~~--~~~~~~~~~a~spDG~~~l~v~~  319 (355)
T d2bbkh_         244 DGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER--LAKF--EMGHEIDSINVSQDEKPLLYALS  319 (355)
T ss_dssp             TTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE--EEEE--EEEEEECEEEECCSSSCEEEEEE
T ss_pred             eeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcE--EEEe--cCCCCEEEEEEcCCCCeEEEEEE
Confidence                11234589999999998876432         3677888754321  1111  1123478899999996 444443


Q ss_pred             cCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEEC
Q 018474          255 KMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFND  311 (355)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~  311 (355)
                      ..                                   .+.|..+|.++|+.+..+..
T Consensus       320 ~~-----------------------------------d~~i~v~D~~tg~~~~~i~~  341 (355)
T d2bbkh_         320 TG-----------------------------------DKTLYIHDAESGEELRSVNQ  341 (355)
T ss_dssp             TT-----------------------------------TTEEEEEETTTCCEEEEECC
T ss_pred             CC-----------------------------------CCEEEEEECCCCCEEEEEeC
Confidence            31                                   14688999889999888854

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=97.85  E-value=0.0069  Score=52.41  Aligned_cols=240  Identities=13%  Similarity=0.065  Sum_probs=123.1

Q ss_pred             CceEEEeeCCCeEEEEec----------CCEEEEEEcCCCeeEEeecc--------CCCcccCeEECCCCC-EEEEeCC-
Q 018474           54 PEDVSVVVSKGALYTATR----------DGWVKYFILHNETLVNWKHI--------DSQSLLGLTTTKDGG-VILCDNE-  113 (355)
Q Consensus        54 p~~i~~d~~~g~l~~~~~----------~g~i~~~~~~~g~~~~~~~~--------~~~p~~gl~~d~~g~-L~v~~~~-  113 (355)
                      +..+++.|++..+|++..          ++.|..+|..+++.......        ...|. ++++.++|+ +++.... 
T Consensus        68 ~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~-~~~~s~dg~~~~v~~~~~  146 (373)
T d2madh_          68 LPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSW-MNANTPNNADLLFFQFAA  146 (373)
T ss_pred             CccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCC-cEEEEeCCCcEEEEEEcC
Confidence            347899988888998753          46688889888875432211        23456 777777765 5555433 


Q ss_pred             CcEE-EEcC-CC-eEEEcCCcCCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecc-
Q 018474          114 KGLL-KVTE-EG-VEAIVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG-  188 (355)
Q Consensus       114 ~gl~-~~~~-~g-~~~~~~~~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~-  188 (355)
                      .+.+ ..+. .+ .....   ..+..+.+.++| .+|++...                 .+.+..++..+++....... 
T Consensus       147 ~~~~~~~~~~~~~~~~~~---~~~~~~~~s~~g~~~~v~~~~-----------------dg~~~~~~~~~~~~~~~~~~~  206 (373)
T d2madh_         147 GPAVGLVVQGGSSDDQLL---SSPTCYHIHPGAPSTFYLLCA-----------------QGGLAKTDHAGGAAGAGLVGA  206 (373)
T ss_pred             CCceEEeeccCCeEEEEe---ccceeEEEecCCCcEEEEEcC-----------------CCeEEEEEcCCceeeEEEeee
Confidence            2222 2232 22 11111   346778888888 56666543                 45677787766655433211 


Q ss_pred             ------ccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEe---------cccCCCCcCceEECCCCC-EEEE
Q 018474          189 ------FYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAF---------IENLPGGPDNINLAPDGS-FWIG  252 (355)
Q Consensus       189 ------~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~---------~~~~~g~p~~i~~d~~G~-lwv~  252 (355)
                            ...+.....++++..+  .....+.+..++..+.........         ....++....+...++|. +++.
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  284 (373)
T d2madh_         207 MLTAAQNLLTQPAQANKSGRIV--WPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLL  284 (373)
T ss_pred             ccccCccceeeeEEECCCceEE--EecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEe
Confidence                  1122334445554433  333445666666543211111100         001122223345566664 3443


Q ss_pred             eecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEe-CC-E-
Q 018474          253 LIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEF-DG-N-  329 (355)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g-~-  329 (355)
                      ..... ...                          .......+..+|..+++.+..+....     .+..+... +| + 
T Consensus       285 ~~~~~-~~~--------------------------~~~~~~~v~~~d~~t~~~~~~~~~~~-----~~~~~a~spDG~~~  332 (373)
T d2madh_         285 TSEQS-AWK--------------------------LHAAAKEVTSVTGLVGQTSSQISLGH-----DVDAISVAQDGGPD  332 (373)
T ss_pred             cCCCc-eEE--------------------------eecCCCeEEEEECCCCcEEEEecCCC-----CeeEEEECCCCCEE
Confidence            32211 000                          00122457778876777766664322     23344443 33 4 


Q ss_pred             EEEeecCCCeEEEeeCCCC
Q 018474          330 LYLASLQSNFIGILPLDGP  348 (355)
Q Consensus       330 L~v~~~~~~~i~~~~~~~~  348 (355)
                      ||+++...+.|.++++.+-
T Consensus       333 l~vt~~~d~~v~v~D~~tg  351 (373)
T d2madh_         333 LYALSAGTEVLHIYDAGAG  351 (373)
T ss_pred             EEEEeCCCCeEEEEECCCC
Confidence            5677777788888887654

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.80  E-value=0.0075  Score=50.97  Aligned_cols=63  Identities=10%  Similarity=0.071  Sum_probs=42.7

Q ss_pred             ceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeec-cCCCcccCeEECCCCCEEEEeCCCcEEEEc
Q 018474           55 EDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH-IDSQSLLGLTTTKDGGVILCDNEKGLLKVT  120 (355)
Q Consensus        55 ~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~-~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~  120 (355)
                      .++.++  ++.|++++.||.|..+|..+++...... ..+.+. ++++.+++.|+.+...+.+...+
T Consensus        17 tc~~~~--~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~-~l~~s~~~~l~s~s~D~~i~iw~   80 (355)
T d1nexb2          17 TCLQFE--DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVW-ALKYAHGGILVSGSTDRTVRVWD   80 (355)
T ss_dssp             EEEEEE--TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEE-EEEEETTTEEEEEETTCCEEEEE
T ss_pred             EEEEEC--CCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEE-EEEEcCCCEEEEEeccccccccc
Confidence            355555  7788899999999999998887654332 234567 88887766666665444444445

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.74  E-value=0.00059  Score=59.91  Aligned_cols=186  Identities=12%  Similarity=0.053  Sum_probs=104.5

Q ss_pred             CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCe--EEEee-c-c-----ccccccEEE--eCC
Q 018474          132 SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE--TTVLH-E-G-----FYFANGIAL--SKN  200 (355)
Q Consensus       132 ~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~--~~~~~-~-~-----~~~pngi~~--~~d  200 (355)
                      ..+.|++++++|.+|++.....-..     ..+.....|.++.+|.++.+  ...+. . +     ...|.|+.+  ++|
T Consensus        35 ~G~EDi~~~~dg~~~issg~~~~~~-----~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~d  109 (340)
T d1v04a_          35 NGSEDLEILPNGLAFISSGLKYPGI-----MSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDD  109 (340)
T ss_dssp             SCCCEEEECTTSEEEEEECCCC-------------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTT
T ss_pred             CCcceEEECCCCcEEEEecCccCCC-----CCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCC
Confidence            5688999999998888754210000     01112335889999875543  22221 1 1     146889887  445


Q ss_pred             CC-EEEEEeC--CCCeEEEEEeCC--CCCcceeEecccCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHH
Q 018474          201 ED-FVVVCES--WKFRCRRYWLKG--DRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLD  275 (355)
Q Consensus       201 g~-~l~v~~~--~~~~i~~~~~~~--~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~  275 (355)
                      |+ .|++.+-  ...+|-.|.++.  ........+.+.....|+.++..++|.+|++....-        ..+..+. +.
T Consensus       110 g~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~--------~~~~~~~-~e  180 (340)
T d1v04a_         110 NTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYF--------IDPYLKS-WE  180 (340)
T ss_dssp             CCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSC--------CSHHHHH-HH
T ss_pred             CcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccC--------cChhhhh-hh
Confidence            65 5677653  355676666632  223333333333335689999989999999863311        1111111 11


Q ss_pred             hccchhhcccCCCCCCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEE--eCCEEEEeecCCCeEEEeeCCCC
Q 018474          276 AYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAE--FDGNLYLASLQSNFIGILPLDGP  348 (355)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~--~~g~L~v~~~~~~~i~~~~~~~~  348 (355)
                      .+          ...+.+.|+.+++ +..  ....+  +  .....+++.  +++.|||+.....+|.+|++.+.
T Consensus       181 ~~----------~~~~~g~v~~~~~-~~~--~~~~~--~--l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~  238 (340)
T d1v04a_         181 MH----------LGLAWSFVTYYSP-NDV--RVVAE--G--FDFANGINISPDGKYVYIAELLAHKIHVYEKHAN  238 (340)
T ss_dssp             HH----------TTCCCEEEEEECS-SCE--EEEEE--E--ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             Hh----------hcCCceeEEEEcC-Cce--EEEcC--C--CCccceeEECCCCCEEEEEeCCCCeEEEEEeCCC
Confidence            10          1234467888887 332  12211  2  123444554  35789999999999999998754

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.61  E-value=0.0023  Score=57.01  Aligned_cols=205  Identities=14%  Similarity=0.100  Sum_probs=118.5

Q ss_pred             cCCCCCCCceEEEee---CCCeEEEEec-CCEEEEEEcCCCeeEEeecc--CCCcccCeEECCCC-CEEEEeCCC-----
Q 018474           47 GEGCVNHPEDVSVVV---SKGALYTATR-DGWVKYFILHNETLVNWKHI--DSQSLLGLTTTKDG-GVILCDNEK-----  114 (355)
Q Consensus        47 ~~~~~~~p~~i~~d~---~~g~l~~~~~-~g~i~~~~~~~g~~~~~~~~--~~~p~~gl~~d~~g-~L~v~~~~~-----  114 (355)
                      .-|....| .+....   +++.+|+... +++|.++|.++-+..++...  ...++ |+....++ ..||.....     
T Consensus        81 ~~GD~HHP-~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~H-G~r~~~~p~T~YV~~~~e~~vP~  158 (459)
T d1fwxa2          81 DNGDLHHV-HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIH-GLRPQKWPRSNYVFCNGEDETPL  158 (459)
T ss_dssp             CCCCBCCE-EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEE-EEEECCSSBCSEEEEEECSCEES
T ss_pred             cCCCcCCC-cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCc-eeecccCCCeEEEEccCcccccc
Confidence            34667778 555551   3667888764 79999999988887665543  34678 88887654 467754221     


Q ss_pred             --------------cE-EEEcC-CC---eEEEcCCcCCcccEEEccCCc-EEEEeCCCCCCC---------ccccc----
Q 018474          115 --------------GL-LKVTE-EG---VEAIVPDASFTNDVIAASDGT-LYFTVASTKYTP---------TDFYK----  161 (355)
Q Consensus       115 --------------gl-~~~~~-~g---~~~~~~~~~~~~~l~~d~dG~-ly~~d~~~~~~~---------~~~~~----  161 (355)
                                    ++ -.+|. +.   .+....  ..+.++.++++|+ +|++...+.-..         .++..    
T Consensus       159 pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V~--g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~  236 (459)
T d1fwxa2         159 VNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVS--GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNI  236 (459)
T ss_dssp             SCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEES--SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEH
T ss_pred             CCCCccccchhhcceEEEEEecCCceEEEEeeeC--CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEech
Confidence                          12 23442 33   122222  4688999999995 666543321110         00000    


Q ss_pred             -ccc----cc--CCCCeEEEEeCCCC---eEEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCC------CCCc
Q 018474          162 -DMA----EG--KPYGQLRKYDPKLK---ETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKG------DRAG  225 (355)
Q Consensus       162 -~~~----~~--~~~g~l~~~dp~~~---~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~------~~~~  225 (355)
                       .+.    .+  ...+++-..|....   .+..+..-...|.|+.++|||+++|++......+.+|+++.      .+..
T Consensus       237 ~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~  316 (459)
T d1fwxa2         237 AEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENAD  316 (459)
T ss_dssp             HHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-
T ss_pred             HHhHHhhhcCCcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCC
Confidence             000    00  00123445565421   23333444567999999999999999999999999999842      1111


Q ss_pred             ceeEe-cc-cCCCCcCceEECCCCCEEEEeec
Q 018474          226 ILDAF-IE-NLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       226 ~~~~~-~~-~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      ..... .+ .+.--|---.+|.+|+.|.+.+-
T Consensus       317 ~~~~~~~e~elglgPLht~fd~~g~aytslfi  348 (459)
T d1fwxa2         317 PRSAVVAEPELGLGPLHTAFDGRGNAYTSLFL  348 (459)
T ss_dssp             GGGGEEECCBCCSCEEEEEECTTSEEEEEETT
T ss_pred             ccccEEeecccCcCccccccCCCceEEEEeec
Confidence            11111 11 11112445678999999998765

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=97.37  E-value=0.013  Score=51.01  Aligned_cols=192  Identities=16%  Similarity=0.184  Sum_probs=102.1

Q ss_pred             CCCCEEEEeCC-CcEEEEcCCC--eEEEcCCcCCcccEEEc------cCCc--EEEEeCCCCCCCccccccccccCCCCe
Q 018474          103 KDGGVILCDNE-KGLLKVTEEG--VEAIVPDASFTNDVIAA------SDGT--LYFTVASTKYTPTDFYKDMAEGKPYGQ  171 (355)
Q Consensus       103 ~~g~L~v~~~~-~gl~~~~~~g--~~~~~~~~~~~~~l~~d------~dG~--ly~~d~~~~~~~~~~~~~~~~~~~~g~  171 (355)
                      ++..|.+++.. .||+.|+.+|  ++.+..  ..+|.+.+-      .++.  ++.++...             +..+-.
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~G~~l~~~~~--Gr~NNVDvr~~~~l~~~~~di~vasnR~~-------------~~~~l~  102 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLEGKMLHSYHT--GKLNNVDIRYDFPLNGKKVDIAAASNRSE-------------GKNTIE  102 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETTCCEEEECCS--SCEEEEEEEEEEEETTEEEEEEEEEECCT-------------TTCEEE
T ss_pred             cCccEEEEEcCcCCEEEEcCCCcEEEeccc--CCcCccccccccccCCcceEEEEEeCCcC-------------cceeEE
Confidence            34556666544 5788888767  444332  244544322      2221  23333320             011224


Q ss_pred             EEEEeCCCCeEEEeec-------cccccccEEE--eCC-CCEEEEEeCCCCeEEEEEeCCCC---Cc--ceeEecccCCC
Q 018474          172 LRKYDPKLKETTVLHE-------GFYFANGIAL--SKN-EDFVVVCESWKFRCRRYWLKGDR---AG--ILDAFIENLPG  236 (355)
Q Consensus       172 l~~~dp~~~~~~~~~~-------~~~~pngi~~--~~d-g~~l~v~~~~~~~i~~~~~~~~~---~~--~~~~~~~~~~g  236 (355)
                      +|.+|+..+.+..+..       .+..+.|+|+  +++ |+...+.....+.+.+|.+....   ..  ..+.|  ..++
T Consensus       103 ~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f--~~~~  180 (353)
T d1h6la_         103 IYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAF--KMNS  180 (353)
T ss_dssp             EEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEE--ECSS
T ss_pred             EEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeecc--CCCC
Confidence            6777877666654421       2335789999  444 44323333346788888763211   11  12222  4556


Q ss_pred             CcCceEECCC-CCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeC--CCCeEEEEEECCC
Q 018474          237 GPDNINLAPD-GSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDG--NDGKIIRDFNDPD  313 (355)
Q Consensus       237 ~p~~i~~d~~-G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~g~~~~~~~~~~  313 (355)
                      .+.|+++|++ ++|||+...                                     .++++|+.  ..+.....+....
T Consensus       181 q~EGCVvDde~~~LyisEE~-------------------------------------~Giw~~~a~~~~~~~~~~i~~~~  223 (353)
T d1h6la_         181 QTEGMAADDEYGSLYIAEED-------------------------------------EAIWKFSAEPDGGSNGTVIDRAD  223 (353)
T ss_dssp             CEEEEEEETTTTEEEEEETT-------------------------------------TEEEEEESSTTSCSCCEEEEECS
T ss_pred             ccceEEEeCCCCcEEEecCc-------------------------------------cceEEEEeccCCCccceeeeccc
Confidence            6889999876 679999765                                     36787853  1122111121111


Q ss_pred             C-CcccceeEEE--E---eCCEEEEeecCCCeEEEeeCCCC
Q 018474          314 A-TYISFVTSAA--E---FDGNLYLASLQSNFIGILPLDGP  348 (355)
Q Consensus       314 g-~~~~~~~~~~--~---~~g~L~v~~~~~~~i~~~~~~~~  348 (355)
                      | .....+-++.  .   .+|.|.+++-+.+...+|+..+.
T Consensus       224 g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~  264 (353)
T d1h6la_         224 GRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ  264 (353)
T ss_dssp             SSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred             CccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            2 1233333343  2   24788889888888888887553

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.37  E-value=0.056  Score=50.12  Aligned_cols=61  Identities=15%  Similarity=0.292  Sum_probs=43.8

Q ss_pred             ceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeCCEEEEeec---------------------CCCeEEEeeCCCCCC
Q 018474          292 GARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASL---------------------QSNFIGILPLDGPEP  350 (355)
Q Consensus       292 ~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~---------------------~~~~i~~~~~~~~~~  350 (355)
                      .+-+..||.++|+.+=.+..+.+.....+  ..+.+|+-||.-.                     .+++|.+|.|++..+
T Consensus       478 dg~l~A~Da~tGe~LW~~~l~~~~~~~P~--ty~~dGkqyv~v~aG~g~~~~~~~~~~~~~~~~~~g~~l~~F~L~g~~~  555 (560)
T d1kv9a2         478 AGQMHAYSADKGEALWQFEAQSGIVAAPM--TFELAGRQYVAIMAGWGGVATLTGGESMNLPGMKNRSRLLVFALDGKAQ  555 (560)
T ss_dssp             TSEEEEEETTTCCEEEEEECSSCCCSCCE--EEEETTEEEEEEEECCCSHHHHHCCGGGGSTTCCCCCEEEEEEETCCCC
T ss_pred             CCcEEEEECCCCcEeEEEECCCCccccCE--EEEECCEEEEEEEeCCCcccccccccccccccCCCCCEEEEEEeCCCCC
Confidence            36789999889999988988776433333  3457888887532                     236899999998877


Q ss_pred             CcCC
Q 018474          351 QLAT  354 (355)
Q Consensus       351 ~~~~  354 (355)
                      .-+|
T Consensus       556 ~~~~  559 (560)
T d1kv9a2         556 LPPP  559 (560)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            6554

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.33  E-value=0.0023  Score=56.49  Aligned_cols=132  Identities=16%  Similarity=0.213  Sum_probs=87.2

Q ss_pred             CCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEE-eec------cCCCcccCeEECCCCCEEEEeCCC---cEEEE-c-
Q 018474           53 HPEDVSVVVSKGALYTATRDGWVKYFILHNETLVN-WKH------IDSQSLLGLTTTKDGGVILCDNEK---GLLKV-T-  120 (355)
Q Consensus        53 ~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~-~~~------~~~~p~~gl~~d~~g~L~v~~~~~---gl~~~-~-  120 (355)
                      ...++++. +++.+.+++.||.|..+|..+++... +..      ....+. .+++.++|++.++...+   +++++ + 
T Consensus       186 ~~~~v~~s-~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~-~l~~spdg~~l~sgs~D~t~~~i~lwd~  263 (393)
T d1sq9a_         186 FATSVDIS-ERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIR-SVKFSPQGSLLAIAHDSNSFGCITLYET  263 (393)
T ss_dssp             CCCEEEEC-TTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEE-EEEECSSTTEEEEEEEETTEEEEEEEET
T ss_pred             cEEEEEEC-CCCEEEEEeCCCcEEEEeecccccccccccccccccccceEE-EcccccccceeeeecCCCCcceeeeccc
Confidence            35678888 56788888999999999998876432 211      123456 88999999877664332   34444 4 


Q ss_pred             CCC--eEEEcCC-------------cCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEe
Q 018474          121 EEG--VEAIVPD-------------ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL  185 (355)
Q Consensus       121 ~~g--~~~~~~~-------------~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~  185 (355)
                      .+|  +..+...             ...+++++++|||++.++.+.                 .+.|..||.++++....
T Consensus       264 ~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~-----------------D~~v~vWd~~~g~~~~~  326 (393)
T d1sq9a_         264 EFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW-----------------DGKLRFWDVKTKERITT  326 (393)
T ss_dssp             TTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEET-----------------TSEEEEEETTTTEEEEE
T ss_pred             ccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECC-----------------CCEEEEEECCCCCEEEE
Confidence            355  4444221             156888999999988877544                 56899999888865433


Q ss_pred             eccc-----cccccEEEeCCCCE
Q 018474          186 HEGF-----YFANGIALSKNEDF  203 (355)
Q Consensus       186 ~~~~-----~~pngi~~~~dg~~  203 (355)
                      ..+.     .....++++++++.
T Consensus       327 l~gH~~~v~~~~~~~~~~~~~~~  349 (393)
T d1sq9a_         327 LNMHCDDIEIEEDILAVDEHGDS  349 (393)
T ss_dssp             EECCGGGCSSGGGCCCBCTTSCB
T ss_pred             ECCcCCcccCCccEEEECCCCCE
Confidence            3221     12346788888874

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.21  E-value=0.039  Score=45.18  Aligned_cols=86  Identities=14%  Similarity=-0.017  Sum_probs=53.3

Q ss_pred             CCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEE-EeCCC-----cEEEEcC-CC-eEEEcCCc--
Q 018474           63 KGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VIL-CDNEK-----GLLKVTE-EG-VEAIVPDA--  131 (355)
Q Consensus        63 ~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v-~~~~~-----gl~~~~~-~g-~~~~~~~~--  131 (355)
                      +..+... .+|.|+.++..+++.+++....+... +.++.+||+ |.+ .....     .++.++. .| .+.+....  
T Consensus        12 G~~v~f~-~~~dl~~~d~~~g~~~~Lt~~~~~~~-~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~   89 (281)
T d1k32a2          12 GDRIIFV-CCDDLWEHDLKSGSTRKIVSNLGVIN-NARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGK   89 (281)
T ss_dssp             TTEEEEE-ETTEEEEEETTTCCEEEEECSSSEEE-EEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEE
T ss_pred             CCEEEEE-eCCcEEEEECCCCCEEEEecCCCccc-CEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCC
Confidence            4444433 35679999988888887765555555 778889997 433 32111     3777774 55 55554321  


Q ss_pred             -----CCcccEEEccCCc-EEEEeC
Q 018474          132 -----SFTNDVIAASDGT-LYFTVA  150 (355)
Q Consensus       132 -----~~~~~l~~d~dG~-ly~~d~  150 (355)
                           .........+||+ |+++..
T Consensus        90 ~~~~~~~~~~~~~spdg~~l~~~~~  114 (281)
T d1k32a2          90 STGRRMFTDVAGFDPDGNLIISTDA  114 (281)
T ss_dssp             EETTEECSEEEEECTTCCEEEEECT
T ss_pred             ccCccccccccccCCCCCEEEEEEc
Confidence                 3455678889994 666543

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.16  E-value=0.031  Score=46.11  Aligned_cols=175  Identities=15%  Similarity=0.107  Sum_probs=94.0

Q ss_pred             CCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCC-CEEEEeCCCcEEEE-cCCC--e-EE
Q 018474           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDG-GVILCDNEKGLLKV-TEEG--V-EA  126 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g-~L~v~~~~~gl~~~-~~~g--~-~~  126 (355)
                      ..|..+... .++.+++...++.+..++..+++...........   .++.+++ .+.++...++.+++ +...  . ..
T Consensus        81 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~  156 (287)
T d1pgua2          81 SQPKVASAN-NDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPG---SAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFD  156 (287)
T ss_dssp             SCEEEEEEC-SSSEEEEEETTSEEEEEETTTCCEEEEEECSSCE---EEEEECSSEEEEEETTTSCEEEEETTEEEEEEE
T ss_pred             cceeeeeec-cCCceEEEeecccceeeeccceeeeeecccccee---eeeeccCcceeeeccccceeeeeeccccceeee
Confidence            457777777 6777777777778888888777654433322222   3333344 45566554444444 4322  2 22


Q ss_pred             EcCC-cCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecc--ccccccEEEeC----
Q 018474          127 IVPD-ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG--FYFANGIALSK----  199 (355)
Q Consensus       127 ~~~~-~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~--~~~pngi~~~~----  199 (355)
                      +... ...+..++++++|...++...                 .+.+..||..+++.......  ....+.++++|    
T Consensus       157 ~~~~~~~~v~~~~~s~~~~~l~~g~~-----------------dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~  219 (287)
T d1pgua2         157 LKTPLRAKPSYISISPSETYIAAGDV-----------------MGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKG  219 (287)
T ss_dssp             CSSCCSSCEEEEEECTTSSEEEEEET-----------------TSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC--
T ss_pred             eeeccCCceeEEEeccCccccccccc-----------------cccccceeecccccccccccccccccceeeecccccc
Confidence            2221 155788999999975554322                 45688888877665332111  11234455554    


Q ss_pred             ------CCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEE
Q 018474          200 ------NEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFW  250 (355)
Q Consensus       200 ------dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lw  250 (355)
                            +++ ++++....+.|..|+++... ...+ ......+....+.+.+++.+.
T Consensus       220 ~~~~~~~~~-~l~sgs~D~~i~iw~~~~~~-~~~~-~~~~h~~~V~~v~~~~~~~l~  273 (287)
T d1pgua2         220 ANEEEIEED-LVATGSLDTNIFIYSVKRPM-KIIK-ALNAHKDGVNNLLWETPSTLV  273 (287)
T ss_dssp             ----CCSCC-EEEEEETTSCEEEEESSCTT-CCEE-ETTSSTTCEEEEEEEETTEEE
T ss_pred             cccccCCCC-eeEeecCCCeEEEEECCCCC-eEEE-EeCCCCCCeEEEEECCCCEEE
Confidence                  444 45555667788888875321 1122 121222334556666666543

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.75  E-value=0.019  Score=50.28  Aligned_cols=111  Identities=10%  Similarity=0.136  Sum_probs=65.8

Q ss_pred             cccCeEECCCCCEEEEeCCCcEEEEc-CCC--eEEEcCC------cCCcccEEEccCCcEEEEeCCCCCCCccccccccc
Q 018474           95 SLLGLTTTKDGGVILCDNEKGLLKVT-EEG--VEAIVPD------ASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAE  165 (355)
Q Consensus        95 p~~gl~~d~~g~L~v~~~~~gl~~~~-~~g--~~~~~~~------~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~  165 (355)
                      +. ++++.++|.|..+...+-+..++ .++  +..+...      ...+++++++|||++.++-+..             
T Consensus       187 ~~-~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D-------------  252 (393)
T d1sq9a_         187 AT-SVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDS-------------  252 (393)
T ss_dssp             CC-EEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEE-------------
T ss_pred             EE-EEEECCCCEEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCC-------------
Confidence            45 67888888555454333344555 355  3333221      2578899999999877764320             


Q ss_pred             cCCCCeEEEEeCCCCeEEEeecc--------------ccccccEEEeCCCCEEEEEeCCCCeEEEEEeCC
Q 018474          166 GKPYGQLRKYDPKLKETTVLHEG--------------FYFANGIALSKNEDFVVVCESWKFRCRRYWLKG  221 (355)
Q Consensus       166 ~~~~g~l~~~dp~~~~~~~~~~~--------------~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~  221 (355)
                       ...+.+..||.++++.......              ...-+.++++||++. +++....+.|..++++.
T Consensus       253 -~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~-l~S~s~D~~v~vWd~~~  320 (393)
T d1sq9a_         253 -NSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGET-LCSAGWDGKLRFWDVKT  320 (393)
T ss_dssp             -TTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSE-EEEEETTSEEEEEETTT
T ss_pred             -CCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCe-eEEECCCCEEEEEECCC
Confidence             0012355678776654322110              012356899999994 55666678899999854

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.32  E-value=0.14  Score=45.14  Aligned_cols=105  Identities=10%  Similarity=-0.020  Sum_probs=61.2

Q ss_pred             CCC-EEEEeCC-CcEEEEcC-CC-eEEEc-C-CcCCcccEEEccCC-cEEEEeCCCCCC--Ccccccccccc-CCCCeEE
Q 018474          104 DGG-VILCDNE-KGLLKVTE-EG-VEAIV-P-DASFTNDVIAASDG-TLYFTVASTKYT--PTDFYKDMAEG-KPYGQLR  173 (355)
Q Consensus       104 ~g~-L~v~~~~-~gl~~~~~-~g-~~~~~-~-~~~~~~~l~~d~dG-~ly~~d~~~~~~--~~~~~~~~~~~-~~~g~l~  173 (355)
                      ||+ |||.+.. .++.+++. +- ...+. . ....+.++....++ +.|+..... +.  +......+-+. ...+.+.
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e-~~vP~pndg~~l~d~~~y~~~~t  176 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGE-DETPLVNDGTNMEDVANYVNVFT  176 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEEC-SCEESSCSSSSTTCGG-EEEEEE
T ss_pred             ceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCc-cccccCCCCccccchhhcceEEE
Confidence            675 8888866 45888884 33 32222 2 22677888777665 566654220 11  11111111111 1123456


Q ss_pred             EEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeC
Q 018474          174 KYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCES  209 (355)
Q Consensus       174 ~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~  209 (355)
                      .+|.++.++.....-...+.++.+++||+++|++..
T Consensus       177 ~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~Tsy  212 (459)
T d1fwxa2         177 AVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSY  212 (459)
T ss_dssp             EEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEES
T ss_pred             EEecCCceEEEEeeeCCChhccccCCCCCEEEEEec
Confidence            789988887655544457889999999999999863

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.28  E-value=0.21  Score=40.59  Aligned_cols=173  Identities=14%  Similarity=0.062  Sum_probs=94.9

Q ss_pred             CCCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeCCCcEEEEcCCCeEEE
Q 018474           48 EGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDNEKGLLKVTEEGVEAI  127 (355)
Q Consensus        48 ~~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~~~gl~~~~~~g~~~~  127 (355)
                      .|.-..-.++++++    |+.++.||.|..+|..++..    ...+... ++++.+++.++-+. .++.+++.......+
T Consensus        10 ~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~~----~h~~~V~-~~~~~~~~~~~s~s-~D~~v~~w~~~~~~~   79 (287)
T d1pgua2          10 SGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQ----DHSNLIV-SLDNSKAQEYSSIS-WDDTLKVNGITKHEF   79 (287)
T ss_dssp             CCCSSCEEEEETTT----TEEEETTSCEEETTTTEEEC----CCCSCEE-EEECCSTTCCEEEE-TTTEEEETTEEEEEC
T ss_pred             CCCCCceEEEEECc----EEEEeCCCeEEEEECCCCCC----CCCCCEE-EEEecCCCeEEEEe-ecccccccccccccc
Confidence            45545555666652    88999999999888754321    1123345 66666555554444 335555542110111


Q ss_pred             cCCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEE
Q 018474          128 VPDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVC  207 (355)
Q Consensus       128 ~~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~  207 (355)
                         ...|..+...+++.+.+....                  ..+..++..+++.......  .....+++++++.+.++
T Consensus        80 ---~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~  136 (287)
T d1pgua2          80 ---GSQPKVASANNDGFTAVLTND------------------DDLLILQSFTGDIIKSVRL--NSPGSAVSLSQNYVAVG  136 (287)
T ss_dssp             ---SSCEEEEEECSSSEEEEEETT------------------SEEEEEETTTCCEEEEEEC--SSCEEEEEECSSEEEEE
T ss_pred             ---ccceeeeeeccCCceEEEeec------------------ccceeeeccceeeeeeccc--cceeeeeeccCcceeee
Confidence               134666777788866665332                  3566676666654332211  23456788888878777


Q ss_pred             eCCCCeEEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeec
Q 018474          208 ESWKFRCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       208 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      ....+.+..|++....  ....+.....+....+.++++|.+.++...
T Consensus       137 ~~~~~~v~~~~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~  182 (287)
T d1pgua2         137 LEEGNTIQVFKLSDLE--VSFDLKTPLRAKPSYISISPSETYIAAGDV  182 (287)
T ss_dssp             ETTTSCEEEEETTEEE--EEEECSSCCSSCEEEEEECTTSSEEEEEET
T ss_pred             ccccceeeeeeccccc--eeeeeeeccCCceeEEEeccCccccccccc
Confidence            7666667777763211  111111112233455788999986655443

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.19  E-value=0.47  Score=43.67  Aligned_cols=42  Identities=29%  Similarity=0.464  Sum_probs=29.9

Q ss_pred             ceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeCCEEEEeec
Q 018474          292 GARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASL  335 (355)
Q Consensus       292 ~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~  335 (355)
                      .+-+..||.++|+.+=.+..+.+.....++  .+.+|+.||+-.
T Consensus       484 dg~l~A~Da~tGe~lW~~~l~~~~~a~P~t--y~~dGkqYi~v~  525 (571)
T d2ad6a1         484 DGYLKALDNKDGKELWNFKMPSGGIGSPMT--YSFKGKQYIGSM  525 (571)
T ss_dssp             TSEEEEEETTTCCEEEEEECSSCCCSCCEE--EEETTEEEEEEE
T ss_pred             CCeEEEEECCCCcEEEEEECCCCceecceE--EEECCEEEEEEE
Confidence            467899999899999888887664333333  356899999543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.80  E-value=0.35  Score=38.94  Aligned_cols=202  Identities=15%  Similarity=0.079  Sum_probs=104.6

Q ss_pred             eEEEeeCCCeEEEEec---CCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeC-CC-c--EEEEcC-CC-eEE
Q 018474           56 DVSVVVSKGALYTATR---DGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDN-EK-G--LLKVTE-EG-VEA  126 (355)
Q Consensus        56 ~i~~d~~~g~l~~~~~---~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~-~~-g--l~~~~~-~g-~~~  126 (355)
                      +.++.|++..|.....   ...++.++..++............. ...++++|..++... .. .  +..... .. ...
T Consensus        43 sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~  121 (269)
T d2hqsa1          43 SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNG-APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ  121 (269)
T ss_dssp             EEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEE-EEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE
T ss_pred             eeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccc-cceecCCCCeeeEeeecCCccceeeccccccccee
Confidence            6678877777755433   2357777876776666655555566 677888887544322 11 1  222222 22 222


Q ss_pred             EcCCcCCcccEEEccCC-cEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEE
Q 018474          127 IVPDASFTNDVIAASDG-TLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVV  205 (355)
Q Consensus       127 ~~~~~~~~~~l~~d~dG-~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~  205 (355)
                      ...............++ .+++....               .....++.++.+++....+...........++||++.++
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~  186 (269)
T d2hqsa1         122 VTDGRSNNTEPTWFPDSQNLAFTSDQ---------------AGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMV  186 (269)
T ss_dssp             CCCCSSCEEEEEECTTSSEEEEEECT---------------TSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEE
T ss_pred             eeeccccccccccccccccceecccc---------------cCCceEeeeecccccceeeecccccccccccccccceeE
Confidence            22211112222344444 23333221               112367888877776554443333334457899999777


Q ss_pred             EEeCCCC--eEEEEEeCCCCCcceeEecccCCCCcCceEECCCCC-E-EEEeecCCchhhHhhhcchhHHHHHHhccchh
Q 018474          206 VCESWKF--RCRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGS-F-WIGLIKMNQTGVRAIQKCREKWELLDAYPGLI  281 (355)
Q Consensus       206 v~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-l-wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (355)
                      +.....+  .++.++.++   +..+...  ..+.-....+++||+ | |.+...                          
T Consensus       187 ~~~~~~~~~~i~~~~~~~---~~~~~~~--~~~~~~~p~~SPDG~~i~f~s~~~--------------------------  235 (269)
T d2hqsa1         187 MVSSNGGQQHIAKQDLAT---GGVQVLS--STFLDETPSLAPNGTMVIYSSSQG--------------------------  235 (269)
T ss_dssp             EEEECSSCEEEEEEETTT---CCEEECC--CSSSCEEEEECTTSSEEEEEEEET--------------------------
T ss_pred             EEeecCCceeeeEeeccc---ccceEee--cCccccceEECCCCCEEEEEEcCC--------------------------
Confidence            7665433  344444322   2222221  122223357889997 3 333322                          


Q ss_pred             hcccCCCCCCceEEEEEeCCCCeEEEEEECCCC
Q 018474          282 SLLLPMGSDAGARVVKVDGNDGKIIRDFNDPDA  314 (355)
Q Consensus       282 ~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~g  314 (355)
                               ....++.++. +|+..+.+...+|
T Consensus       236 ---------~~~~l~~~~~-dg~~~~~lt~~~g  258 (269)
T d2hqsa1         236 ---------MGSVLNLVST-DGRFKARLPATDG  258 (269)
T ss_dssp             ---------TEEEEEEEET-TSCCEEECCCSSS
T ss_pred             ---------CCcEEEEEEC-CCCCEEEEeCCCC
Confidence                     1246888898 7776666666554

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.78  E-value=0.062  Score=48.06  Aligned_cols=113  Identities=12%  Similarity=-0.003  Sum_probs=69.7

Q ss_pred             CeEECCCCCEEEEeCCCcEEEEc-CCC-eEEEcCCc------CCcccEEEccCCc-EEEEeCCCCCCCccccccccccCC
Q 018474           98 GLTTTKDGGVILCDNEKGLLKVT-EEG-VEAIVPDA------SFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKP  168 (355)
Q Consensus        98 gl~~d~~g~L~v~~~~~gl~~~~-~~g-~~~~~~~~------~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~  168 (355)
                      .+.+-+++.++..+ .+.++.++ .+| .+.+....      ..+.++.++|||+ |.++...         ..++....
T Consensus        21 ~~~W~~d~~~~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~---------~~~~r~s~   90 (470)
T d2bgra1          21 SLRWISDHEYLYKQ-ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNY---------VKQWRHSY   90 (470)
T ss_dssp             CCEECSSSEEEEES-SSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEE---------EECSSSCE
T ss_pred             CCEeCCCCEEEEEc-CCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECC---------cceeeecc
Confidence            56666677755544 45788888 466 44443321      4578889999995 4443211         01111222


Q ss_pred             CCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCC
Q 018474          169 YGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGD  222 (355)
Q Consensus       169 ~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~  222 (355)
                      .+.++.||.++++...+...........++|||+.+.+..  .+.++.++..+.
T Consensus        91 ~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~--~~~l~~~~~~~g  142 (470)
T d2bgra1          91 TASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVW--NNDIYVKIEPNL  142 (470)
T ss_dssp             EEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEE--TTEEEEESSTTS
T ss_pred             CceEEEEECCCCcccccccCCccccccccccCcceeeEee--cccceEEECCCC
Confidence            4578899999998765443333344578999999776653  467877776543

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.75  E-value=0.74  Score=42.30  Aligned_cols=108  Identities=14%  Similarity=0.132  Sum_probs=65.1

Q ss_pred             CCeEEEEecCCEEEEEEcCCCeeEEeecc------------CC-CcccCeEECCCCCEEEEeCCCcEEEEc-CCC-eE-E
Q 018474           63 KGALYTATRDGWVKYFILHNETLVNWKHI------------DS-QSLLGLTTTKDGGVILCDNEKGLLKVT-EEG-VE-A  126 (355)
Q Consensus        63 ~g~l~~~~~~g~i~~~~~~~g~~~~~~~~------------~~-~p~~gl~~d~~g~L~v~~~~~gl~~~~-~~g-~~-~  126 (355)
                      +|.+|+++.++.|+.+|.++|+.. |...            .. ... +++.. ++++|+++....++.+| .+| .. .
T Consensus        77 ~g~vyv~t~~~~v~AlDa~TG~~~-W~~~~~~~~~~~~~~~~~~~~~-g~~~~-~~~v~~~t~~g~l~alda~tG~~~W~  153 (573)
T d1kb0a2          77 DGIMYVSASWSVVHAIDTRTGNRI-WTYDPQIDRSTGFKGCCDVVNR-GVALW-KGKVYVGAWDGRLIALDAATGKEVWH  153 (573)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEE-EEECCCCCGGGGGGSSSCSCCC-CCEEE-TTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CCEEEEECCCCeEEEEeCCCCCeE-EEeCCCCCcccccccccccccc-cceEE-CCcEEEEecccceeeeccccccceec
Confidence            679999999999999999999754 2210            00 112 45554 67899998777899999 477 32 1


Q ss_pred             E-c-CCcC---CcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEe
Q 018474          127 I-V-PDAS---FTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL  185 (355)
Q Consensus       127 ~-~-~~~~---~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~  185 (355)
                      . . ....   ...+--+--++.+++.....            +....|.++.+|.+||+....
T Consensus       154 ~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~------------~~~~~G~v~a~D~~TG~~~W~  205 (573)
T d1kb0a2         154 QNTFEGQKGSLTITGAPRVFKGKVIIGNGGA------------EYGVRGYITAYDAETGERKWR  205 (573)
T ss_dssp             EETTTTCCSSCBCCSCCEEETTEEEECCBCT------------TTCCBCEEEEEETTTCCEEEE
T ss_pred             ccCccCCcceEEeecceEEEeccEEEeeccc------------cccccceEEEEecCCccceee
Confidence            1 1 1110   11111111256677654431            122356788899888876543

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.63  E-value=0.44  Score=38.94  Aligned_cols=139  Identities=14%  Similarity=0.076  Sum_probs=72.6

Q ss_pred             CCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecccCCCCcCc-eEECCC
Q 018474          168 PYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIENLPGGPDN-INLAPD  246 (355)
Q Consensus       168 ~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~-i~~d~~  246 (355)
                      ..+.+..||..+++........ ...-.+++++++.+ ++....+.|..|+.....  ....+. ........ ..+..+
T Consensus       195 ~dg~i~~~d~~~~~~~~~~~~~-~~~v~~~~~~~~~l-~s~s~d~~i~iwd~~~~~--~~~~~~-~~~~~~~~~~~~~~~  269 (342)
T d2ovrb2         195 LDTSIRVWDVETGNCIHTLTGH-QSLTSGMELKDNIL-VSGNADSTVKIWDIKTGQ--CLQTLQ-GPNKHQSAVTCLQFN  269 (342)
T ss_dssp             TTSCEEEEETTTCCEEEEECCC-CSCEEEEEEETTEE-EEEETTSCEEEEETTTCC--EEEEEC-STTSCSSCEEEEEEC
T ss_pred             CCCeEEEeecccceeeeEeccc-ccceeEEecCCCEE-EEEcCCCEEEEEeccccc--cccccc-ccceeeeceeecccC
Confidence            3567888888776543322221 12223455566644 555566789889875432  122222 11111112 223344


Q ss_pred             CCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCceEEEEEeCCCCeEEEEEEC-CCCCcccceeEEEE
Q 018474          247 GSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGARVVKVDGNDGKIIRDFND-PDATYISFVTSAAE  325 (355)
Q Consensus       247 G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~~~~-~~g~~~~~~~~~~~  325 (355)
                      +++.++....                                    +.|..+|.++|+.+..+.. ..+.....++.+..
T Consensus       270 ~~~~~s~s~D------------------------------------g~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~  313 (342)
T d2ovrb2         270 KNFVITSSDD------------------------------------GTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRA  313 (342)
T ss_dssp             SSEEEEEETT------------------------------------SEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEE
T ss_pred             CCeeEEEcCC------------------------------------CEEEEEECCCCCEEEEEecccCCCCCCCEEEEEE
Confidence            6666655431                                    4677788768888877753 22222345666776


Q ss_pred             eCCEEEEe-ecCC----CeEEEeeCCC
Q 018474          326 FDGNLYLA-SLQS----NFIGILPLDG  347 (355)
Q Consensus       326 ~~g~L~v~-~~~~----~~i~~~~~~~  347 (355)
                      .++..++. +...    -+|.+.+++.
T Consensus       314 s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         314 SNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             CSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             CCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            66444433 2222    2577777654

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.56  E-value=0.49  Score=38.92  Aligned_cols=138  Identities=8%  Similarity=0.065  Sum_probs=81.6

Q ss_pred             CCCeEEEEecCCEEEEEEcCCCeeEEeecc-CCCcccCeEECCCCCEEEEeCCCc-EEEEc-CCC--eEEEcCCcCCccc
Q 018474           62 SKGALYTATRDGWVKYFILHNETLVNWKHI-DSQSLLGLTTTKDGGVILCDNEKG-LLKVT-EEG--VEAIVPDASFTND  136 (355)
Q Consensus        62 ~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~-~~~p~~gl~~d~~g~L~v~~~~~g-l~~~~-~~g--~~~~~~~~~~~~~  136 (355)
                      .+..+..+..++.|..++..+++....... ..... .+.+++++..++....++ +..++ .++  +..+......+..
T Consensus       170 ~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~  248 (355)
T d1nexb2         170 HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIY-STIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGL  248 (355)
T ss_dssp             ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCE
T ss_pred             ccceeeeecccceeeeeecccccceeeeeccccccc-cccccccceeeecccccceEEeeeccccccccccccccccccc
Confidence            466777788889999999877765443322 23344 677777777555444444 55555 455  4444443355666


Q ss_pred             EEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCCCeEEE
Q 018474          137 VIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFRCRR  216 (355)
Q Consensus       137 l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~i~~  216 (355)
                      +..+  ++..++.+.                 .+.+..||.++.+............-.+++++++ ++++.. .+.|..
T Consensus       249 ~~~~--~~~l~~~~~-----------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~-d~~i~v  307 (355)
T d1nexb2         249 LRLS--DKFLVSAAA-----------------DGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDN-ILVSGS-ENQFNI  307 (355)
T ss_dssp             EEEC--SSEEEEECT-----------------TSEEEEEETTTCCEEEEEECTTCCCCCEEEECSS-EEEEEE-TTEEEE
T ss_pred             cccc--cceeeeeec-----------------ccccccccccccceecccccCCceEEEEEcCCCC-EEEEEe-CCEEEE
Confidence            7665  334444332                 5678888887665443222222222345677877 445543 578999


Q ss_pred             EEeCC
Q 018474          217 YWLKG  221 (355)
Q Consensus       217 ~~~~~  221 (355)
                      |+++.
T Consensus       308 wd~~t  312 (355)
T d1nexb2         308 YNLRS  312 (355)
T ss_dssp             EETTT
T ss_pred             EECCC
Confidence            99854

>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}

class: All beta proteins
fold: 5-bladed beta-propeller
superfamily: Tachylectin-2
family: Tachylectin-2
domain: Tachylectin-2
species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

Probab=95.55  E-value=0.36  Score=37.39  Aligned_cols=143  Identities=15%  Similarity=0.060  Sum_probs=87.9

Q ss_pred             cCceEecCCCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCee-------EEeeccC-CCcccCeEECCCCCEEEEeC
Q 018474           41 KGLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETL-------VNWKHID-SQSLLGLTTTKDGGVILCDN  112 (355)
Q Consensus        41 ~~~~~~~~~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~-------~~~~~~~-~~p~~gl~~d~~g~L~v~~~  112 (355)
                      ..+.+++.+....=.-|++. .+|.||.... +.+++-.+.+-.-       +++-..+ +.-. -+.+|++|-||+.+.
T Consensus        29 ~rA~~lGk~g~~n~~~i~fs-P~G~LyaVr~-~~lY~Gp~~s~~nq~wf~~atrIG~ggWn~Fk-flffdP~G~LyaVt~  105 (235)
T d1tl2a_          29 ARATLIGKGGWSNFKFLFLS-PGGELYGVLN-DKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQ-FLFFDPNGYLYAVSK  105 (235)
T ss_dssp             HHSEEEESSSCTTCSEEEEC-TTSCEEEEET-TEEEEESCCCSTTCCHHHHCEEEECSCGGGCS-EEEECTTSCEEEEET
T ss_pred             chhhhcCcccccceeEEEEC-CCCcEEEEEC-CeEEECCCCCcchHHHHHhhhhcccCcccceE-EEEECCCceEEEecC
Confidence            34567777667777779999 6888997765 4687765433221       2221111 1223 578999999999985


Q ss_pred             CCcEEEEc-CCC--------eEEEcCCc-CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCe-
Q 018474          113 EKGLLKVT-EEG--------VEAIVPDA-SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKE-  181 (355)
Q Consensus       113 ~~gl~~~~-~~g--------~~~~~~~~-~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~-  181 (355)
                       +.|++-. ++.        ...+.... +...-|.+||+|.||...+.                   .+++-.|-++. 
T Consensus       106 -~~LYr~~pPtn~~q~W~g~a~~vG~~gw~df~~lFFdP~G~LYaV~~~-------------------~l~k~~pP~~~~  165 (235)
T d1tl2a_         106 -DKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVHGQ-------------------QFYKALPPVSNQ  165 (235)
T ss_dssp             -TEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEETT-------------------EEEEECCCSSTT
T ss_pred             -cceecCCcCcccchhhhhhhhhhccCCcCceeEEEECCCceEEEEECC-------------------cEEEcCCCCCCC
Confidence             5788887 332        23333322 44556889999999976433                   46666554332 


Q ss_pred             ------EEEee-ccccccccEEEeCCCCEEEEE
Q 018474          182 ------TTVLH-EGFYFANGIALSKNEDFVVVC  207 (355)
Q Consensus       182 ------~~~~~-~~~~~pngi~~~~dg~~l~v~  207 (355)
                            -+.+. ..-..+..|.++|||. |+..
T Consensus       166 d~WL~~st~igr~~w~~~~fi~Fs~dG~-L~~v  197 (235)
T d1tl2a_         166 DNWLARATKIGQGGWDTFKFLFFSSVGT-LFGV  197 (235)
T ss_dssp             CCHHHHCEEEESSSGGGEEEEEECTTSC-EEEE
T ss_pred             chhhhhhhhhccCcccCceEEEECCCCc-EEEE
Confidence                  12222 2223456899999998 6655

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.47  E-value=0.13  Score=45.73  Aligned_cols=134  Identities=10%  Similarity=-0.026  Sum_probs=75.8

Q ss_pred             CceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeecc------CCCcccCeEECCCCC-EEEEeC--------C-CcEE
Q 018474           54 PEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI------DSQSLLGLTTTKDGG-VILCDN--------E-KGLL  117 (355)
Q Consensus        54 p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~------~~~p~~gl~~d~~g~-L~v~~~--------~-~gl~  117 (355)
                      +.++.+- .++.++. ..++.++.+|..+++.+.+...      ...+. +..+.+||+ |.++..        . ..++
T Consensus        19 ~~~~~W~-~d~~~~~-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~-~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~   95 (470)
T d2bgra1          19 LYSLRWI-SDHEYLY-KQENNILVFNAEYGNSSVFLENSTFDEFGHSIN-DYSISPDGQFILLEYNYVKQWRHSYTASYD   95 (470)
T ss_dssp             CCCCEEC-SSSEEEE-ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCC-EEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             ccCCEeC-CCCEEEE-EcCCcEEEEECCCCCEEEEEchhhhhhccCccc-eeEECCCCCEEEEEECCcceeeeccCceEE
Confidence            3345566 3444332 3467799999999876654332      12355 778899998 333221        1 1245


Q ss_pred             EEc-CCC-eEEEcCCcCCcccEEEccCCc-EEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeecc------
Q 018474          118 KVT-EEG-VEAIVPDASFTNDVIAASDGT-LYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEG------  188 (355)
Q Consensus       118 ~~~-~~g-~~~~~~~~~~~~~l~~d~dG~-ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~------  188 (355)
                      .++ .++ .+.+...........++|||+ |.+..                   ...++.++..+++...+...      
T Consensus        96 l~d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~-------------------~~~l~~~~~~~g~~~~~t~~~~~~~~  156 (470)
T d2bgra1          96 IYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVW-------------------NNDIYVKIEPNLPSYRITWTGKEDII  156 (470)
T ss_dssp             EEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEE-------------------TTEEEEESSTTSCCEECCSCCBTTTE
T ss_pred             EEECCCCcccccccCCccccccccccCcceeeEee-------------------cccceEEECCCCceeeeeeccCCCcc
Confidence            666 355 544444335566778999995 43321                   22456666555543322111      


Q ss_pred             -------------ccccccEEEeCCCCEEEEEeC
Q 018474          189 -------------FYFANGIALSKNEDFVVVCES  209 (355)
Q Consensus       189 -------------~~~pngi~~~~dg~~l~v~~~  209 (355)
                                   .....++.++|||+.+.+...
T Consensus       157 ~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~  190 (470)
T d2bgra1         157 YNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQF  190 (470)
T ss_dssp             EESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEE
T ss_pred             cccccceeeeeeecCCccccEECCCCCccceeEe
Confidence                         122456889999997777643

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.43  E-value=0.67  Score=39.72  Aligned_cols=175  Identities=11%  Similarity=0.131  Sum_probs=90.0

Q ss_pred             CeEEEE-ecCCEEEEEEcCCCeeEEeeccCCCcc-----cCeEECCCCC-EEEEeCC----Cc--EEEEcC-CC-eEEEc
Q 018474           64 GALYTA-TRDGWVKYFILHNETLVNWKHIDSQSL-----LGLTTTKDGG-VILCDNE----KG--LLKVTE-EG-VEAIV  128 (355)
Q Consensus        64 g~l~~~-~~~g~i~~~~~~~g~~~~~~~~~~~p~-----~gl~~d~~g~-L~v~~~~----~g--l~~~~~-~g-~~~~~  128 (355)
                      ..|.++ ..+++|+.+|. +|+...+... ++++     .++.++.++. +.+++..    ..  ++.++. .+ ++.+.
T Consensus        40 ~SlI~gTdK~~Gl~vYdL-~G~~l~~~~~-Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~  117 (353)
T d1h6la_          40 NSKLITTNKKSGLAVYSL-EGKMLHSYHT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSIT  117 (353)
T ss_dssp             GCEEEEEETTSCCEEEET-TCCEEEECCS-SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECS
T ss_pred             ccEEEEEcCcCCEEEEcC-CCcEEEeccc-CCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccccc
Confidence            345544 45667999998 6765555432 3333     0233332222 3444422    12  455554 34 55443


Q ss_pred             CC-------cCCcccEEE--cc-CCcEEEEeCCCCCCCccccccccccCCCCeEEE--Ee-CCCCeEE--Ee--eccccc
Q 018474          129 PD-------ASFTNDVIA--AS-DGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRK--YD-PKLKETT--VL--HEGFYF  191 (355)
Q Consensus       129 ~~-------~~~~~~l~~--d~-dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~--~d-p~~~~~~--~~--~~~~~~  191 (355)
                      ..       ...+.++|.  ++ +|.+|+-...                ..|.+..  +. ...+.+.  .+  ......
T Consensus       118 ~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~----------------k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q  181 (353)
T d1h6la_         118 DPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTG----------------KEGEFEQYELNADKNGYISGKKVRAFKMNSQ  181 (353)
T ss_dssp             CSSSCEECSSSSCCCEEEEECTTTCCEEEEEEC----------------SSSEEEEEEEEECTTSSEEEEEEEEEECSSC
T ss_pred             ccccccccccCcceEEEEEecCCCCeEEEEEEc----------------CCceEEEEEEEcCCCCceeeEeeeccCCCCc
Confidence            22       145788887  55 4666643221                1233333  22 2223221  11  122345


Q ss_pred             cccEEEeCCCCEEEEEeCCCCeEEEEEeCCCCCcceeEecc----cCCCCcCceE--ECCCCC-EEEEeecCC
Q 018474          192 ANGIALSKNEDFVVVCESWKFRCRRYWLKGDRAGILDAFIE----NLPGGPDNIN--LAPDGS-FWIGLIKMN  257 (355)
Q Consensus       192 pngi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~----~~~g~p~~i~--~d~~G~-lwv~~~~~~  257 (355)
                      +.|++++.+.+.||+++.. .+||+|..+-...........    ++.+-|.|++  ..++|. +||++.++.
T Consensus       182 ~EGCVvDde~~~LyisEE~-~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~  253 (353)
T d1h6la_         182 TEGMAADDEYGSLYIAEED-EAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGN  253 (353)
T ss_dssp             EEEEEEETTTTEEEEEETT-TEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGG
T ss_pred             cceEEEeCCCCcEEEecCc-cceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCC
Confidence            7899999999999999975 689999975332222221111    2333455664  233443 888887753

>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=95.05  E-value=0.63  Score=40.64  Aligned_cols=151  Identities=7%  Similarity=0.001  Sum_probs=83.0

Q ss_pred             cCCCCCCCceEEEeeCC-CeEEEEecCCEEEEEEcCCCeeEEeeccC-------CCcccCeEECCC--CCEEEEeCC---
Q 018474           47 GEGCVNHPEDVSVVVSK-GALYTATRDGWVKYFILHNETLVNWKHID-------SQSLLGLTTTKD--GGVILCDNE---  113 (355)
Q Consensus        47 ~~~~~~~p~~i~~d~~~-g~l~~~~~~g~i~~~~~~~g~~~~~~~~~-------~~p~~gl~~d~~--g~L~v~~~~---  113 (355)
                      ..|....-.+|+++|.+ +.+|+++..|+|+|-.-....++.+....       .... .|++|+.  .++|+++..   
T Consensus         7 ~~~~gg~~~~i~~~P~~~~~~ya~~~~gGv~~S~dgG~tW~~~~~~~~~~~~~~~~~~-~iavdp~np~~vy~~tg~~~~   85 (427)
T d2ebsa1           7 AIGGGGYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTE-SIALDPNNPDRLYLAQGRYVG   85 (427)
T ss_dssp             CCCBCSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEE-EEEEETTEEEEEEEEECSCTT
T ss_pred             CCCCCCcEEEEEECCCCCCEEEEEecCCCEEEEECCCCceEECCCCCCCCCcccccEe-EEEECCCCCCEEEEEeccccC
Confidence            33444567789998754 66888888788998775445676543211       1244 6888876  478988632   


Q ss_pred             ---CcEEEEcCCC--eEEEcCCc---------CCcccEEEccC--CcEEEEeCCCCCCCccccccccccCCCCeEEEEeC
Q 018474          114 ---KGLLKVTEEG--VEAIVPDA---------SFTNDVIAASD--GTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDP  177 (355)
Q Consensus       114 ---~gl~~~~~~g--~~~~~~~~---------~~~~~l~~d~d--G~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp  177 (355)
                         .++++=...|  -+.+....         .....++++|.  +.+|++..                  .++|++-.-
T Consensus        86 ~~~~gi~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~~------------------~~gl~~S~D  147 (427)
T d2ebsa1          86 DEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTR------------------TEGIWKSSD  147 (427)
T ss_dssp             SSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEECS------------------SSCEEEESS
T ss_pred             CcCccEEEeCCCCccceeecCCcccCccccCccceeEEEECCCccCccccccc------------------ccceeeecC
Confidence               3455443344  33333221         23456888874  36887643                  234554333


Q ss_pred             CCCeEEEeecc---cc---ccccEEEeCC-CCEEEEEeCCCCeEEE
Q 018474          178 KLKETTVLHEG---FY---FANGIALSKN-EDFVVVCESWKFRCRR  216 (355)
Q Consensus       178 ~~~~~~~~~~~---~~---~pngi~~~~d-g~~l~v~~~~~~~i~~  216 (355)
                      ....++.+...   ..   ....+.++|. ...+|+......+|++
T Consensus       148 ~G~tW~~~~~~~~~~~~~~~~~~i~~~p~~~~~~y~~~~~~~giy~  193 (427)
T d2ebsa1         148 RAKTWTNVTSIPDAFTNGIGYTSVIFDPERNGTIYASATAPQGMYV  193 (427)
T ss_dssp             TTSSCEECTTSSCCCCSSSCEEEEEECTTSTTCEEEEESSTTCEEE
T ss_pred             CCceeeecccCcccccCCccceEEEecccccceeeeeeeeccccee
Confidence            33344433211   00   1123566654 3457776665566764

>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}

class: All beta proteins
fold: 5-bladed beta-propeller
superfamily: Tachylectin-2
family: Tachylectin-2
domain: Tachylectin-2
species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

Probab=94.96  E-value=0.083  Score=41.11  Aligned_cols=104  Identities=17%  Similarity=0.110  Sum_probs=73.1

Q ss_pred             cCceEecCCCCCCCceEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeec----cC----CCcccCeEECCCCCEEEEeC
Q 018474           41 KGLTKLGEGCVNHPEDVSVVVSKGALYTATRDGWVKYFILHNETLVNWKH----ID----SQSLLGLTTTKDGGVILCDN  112 (355)
Q Consensus        41 ~~~~~~~~~~~~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~----~~----~~p~~gl~~d~~g~L~v~~~  112 (355)
                      +.+.+|+.+.-..=.-+.+| ..|.||..+ ++.|+|-.|.+.+...|..    .+    +.-. -+.+|++|.||..+.
T Consensus        76 ~~atrIG~ggWn~Fkflffd-P~G~LyaVt-~~~LYr~~pPtn~~q~W~g~a~~vG~~gw~df~-~lFFdP~G~LYaV~~  152 (235)
T d1tl2a_          76 GRAKKIGNGGWNQFQFLFFD-PNGYLYAVS-KDKLYKASPPQSDTDNWIARATEVGSGGWSGFK-FLFFHPNGYLYAVHG  152 (235)
T ss_dssp             HHCEEEECSCGGGCSEEEEC-TTSCEEEEE-TTEEEEESCCCSTTCCHHHHSEEEECSSGGGEE-EEEECTTSCEEEEET
T ss_pred             HhhhhcccCcccceEEEEEC-CCceEEEec-CcceecCCcCcccchhhhhhhhhhccCCcCcee-EEEECCCceEEEEEC
Confidence            45678888777777889999 788999888 4789999876665444321    11    2233 588999999999975


Q ss_pred             CCcEEEEc-CCC--------eEEEcCCc-CCcccEEEccCCcEEEE
Q 018474          113 EKGLLKVT-EEG--------VEAIVPDA-SFTNDVIAASDGTLYFT  148 (355)
Q Consensus       113 ~~gl~~~~-~~g--------~~~~~~~~-~~~~~l~~d~dG~ly~~  148 (355)
                      . .+++-. +.+        .+.+.... ..+..+.+.++|+||-.
T Consensus       153 ~-~l~k~~pP~~~~d~WL~~st~igr~~w~~~~fi~Fs~dG~L~~v  197 (235)
T d1tl2a_         153 Q-QFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGV  197 (235)
T ss_dssp             T-EEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEE
T ss_pred             C-cEEEcCCCCCCCchhhhhhhhhccCcccCceEEEECCCCcEEEE
Confidence            5 688776 332        23444222 55678899999999975

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.85  E-value=0.46  Score=38.71  Aligned_cols=60  Identities=8%  Similarity=0.146  Sum_probs=40.8

Q ss_pred             CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEe
Q 018474          132 SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCE  208 (355)
Q Consensus       132 ~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~  208 (355)
                      ..+++++++|+|++.++.+.                 .|.+..||.++++............-++++++++.+.++.
T Consensus       252 ~~v~~l~~sp~~~~lasg~~-----------------Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~  311 (342)
T d1yfqa_         252 YPVNSIEFSPRHKFLYTAGS-----------------DGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLAT  311 (342)
T ss_dssp             CCEEEEEECTTTCCEEEEET-----------------TSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEE
T ss_pred             ccceeEEecCCccEEEEECC-----------------CCEEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEE
Confidence            45678999999987766433                 5679999988776433222223334578999999776654

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.80  E-value=1.5  Score=40.18  Aligned_cols=131  Identities=17%  Similarity=0.186  Sum_probs=74.1

Q ss_pred             CccCceEecCCCCCCC-ceEEEeeCCCeEEEEec-CCEEEEEEcC-CCeeE-Eeecc-C---------C-CcccCeEECC
Q 018474           39 SMKGLTKLGEGCVNHP-EDVSVVVSKGALYTATR-DGWVKYFILH-NETLV-NWKHI-D---------S-QSLLGLTTTK  103 (355)
Q Consensus        39 ~l~~~~~~~~~~~~~p-~~i~~d~~~g~l~~~~~-~g~i~~~~~~-~g~~~-~~~~~-~---------~-~p~~gl~~d~  103 (355)
                      .|..+-....+...+. ....+.  +|.+|+++. ++.|+.+|.. +|+.. ++... .         . ... +++.. 
T Consensus        39 ~L~~aW~~~~g~~~~~~~tP~v~--~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~r-g~a~~-  114 (571)
T d2ad6a1          39 NVKAAWSFSTGVLNGHEGAPLVI--GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDR-GLAYG-  114 (571)
T ss_dssp             GCEEEEEEECSCCSCCCSCCEEE--TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCC-CCEEE-
T ss_pred             hceEEEEEeCCCCCCcccCCEEE--CCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCC-cceee-
Confidence            3444444554433232 224444  789999886 6889999974 68643 12110 0         0 113 56664 


Q ss_pred             CCCEEEEeCCCcEEEEc-CCC-eEE---EcCC-c-CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEe
Q 018474          104 DGGVILCDNEKGLLKVT-EEG-VEA---IVPD-A-SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYD  176 (355)
Q Consensus       104 ~g~L~v~~~~~gl~~~~-~~g-~~~---~~~~-~-~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~d  176 (355)
                      ++++|+++..+.++.+| ++| +..   +... . .....--+--++.+++..+..            +....|.++.||
T Consensus       115 ~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~------------~~~~~G~v~a~D  182 (571)
T d2ad6a1         115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGA------------ELGVRGAVNAFD  182 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCG------------GGTCCCEEEEEE
T ss_pred             CCeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCCeEEEeeccc------------cccccCcEEEEE
Confidence            68999998877899999 577 321   1111 1 111111111247788765442            112357899999


Q ss_pred             CCCCeEEEe
Q 018474          177 PKLKETTVL  185 (355)
Q Consensus       177 p~~~~~~~~  185 (355)
                      .+||+....
T Consensus       183 ~~TG~~~W~  191 (571)
T d2ad6a1         183 LKTGELKWR  191 (571)
T ss_dssp             TTTCCEEEE
T ss_pred             CCCCcEEEE
Confidence            999987654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.78  E-value=1.3  Score=39.39  Aligned_cols=61  Identities=5%  Similarity=-0.115  Sum_probs=36.9

Q ss_pred             cEEEeCCCCEEEEEeCC----CCeEEEEEeCCCCCcceeEecc-cCCCCcCceEECCCCCEEEEeec
Q 018474          194 GIALSKNEDFVVVCESW----KFRCRRYWLKGDRAGILDAFIE-NLPGGPDNINLAPDGSFWIGLIK  255 (355)
Q Consensus       194 gi~~~~dg~~l~v~~~~----~~~i~~~~~~~~~~~~~~~~~~-~~~g~p~~i~~d~~G~lwv~~~~  255 (355)
                      -++++.+++.+|++.+.    ...|++++++|....+... .+ ...+.-..+.++++|+++|-+..
T Consensus       364 i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt-~~~~~~~~~~~~~~S~~~~y~v~~~s  429 (465)
T d1xfda1         364 ILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLS-CDLVENCTYFSASFSHSMDFFLLKCE  429 (465)
T ss_dssp             EEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSS-TTSSSSCCCCEEEECTTSSEEEEECC
T ss_pred             EEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeec-cccCCCCCEEEEEECCCCCEEEEEee
Confidence            35789999999998753    3358888877643222110 00 01111235678999999887765

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.75  E-value=1.6  Score=40.25  Aligned_cols=63  Identities=19%  Similarity=0.257  Sum_probs=45.2

Q ss_pred             CCceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeCCEEEEee-----------------------------------
Q 018474          290 DAGARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLAS-----------------------------------  334 (355)
Q Consensus       290 ~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~-----------------------------------  334 (355)
                      ...+.+..||.++|+.+=.+..+.+.....++  .+.+|+-||.-                                   
T Consensus       491 ~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~t--Y~~dGkQYvav~~G~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  568 (596)
T d1w6sa_         491 TLDGYLKARDSDTGDLLWKFKIPSGAIGYPMT--YTHKGTQYVAIYYGVGGWPGVGLVFDLADPTAGLGAVGAFKKLANY  568 (596)
T ss_dssp             CTTSEEEEEETTTCCEEEEEECSSCCCSCCEE--EEETTEEEEEEEECCCTTTTHHHHHTCCCTTCGGGHHHHTTTGGGT
T ss_pred             CCCCeEEEEECCCCcEeeEEECCCCcccCCeE--EEECCEEEEEEEecCCccccccccccccCccccccccccccccccc
Confidence            33467999999899999999887775444444  34578877752                                   


Q ss_pred             -cCCCeEEEeeCCCCCCCcCC
Q 018474          335 -LQSNFIGILPLDGPEPQLAT  354 (355)
Q Consensus       335 -~~~~~i~~~~~~~~~~~~~~  354 (355)
                       ..+++|.+|.|++..+..+|
T Consensus       569 ~~~g~~l~vf~l~g~~~~~~~  589 (596)
T d1w6sa_         569 TQMGGGVVVFSLDGKGPYDDP  589 (596)
T ss_dssp             CCCCCEEEEEEETTCCTTSST
T ss_pred             cCCCCEEEEEEeCCCCCCCCC
Confidence             22478999999998776543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=94.53  E-value=0.13  Score=41.81  Aligned_cols=92  Identities=15%  Similarity=0.203  Sum_probs=56.7

Q ss_pred             CCEEEEeCCCcEEEEc-CCC-eEEEcCCcCCcccEEEccCC-cEEEEeC-CCCCCCccccccccccCCCCeEEEEeCCCC
Q 018474          105 GGVILCDNEKGLLKVT-EEG-VEAIVPDASFTNDVIAASDG-TLYFTVA-STKYTPTDFYKDMAEGKPYGQLRKYDPKLK  180 (355)
Q Consensus       105 g~L~v~~~~~gl~~~~-~~g-~~~~~~~~~~~~~l~~d~dG-~ly~~d~-~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~  180 (355)
                      |+-.+-...+.|+.++ +.| .+.+........+.+++||| .|.++.. ..             ......++.++..++
T Consensus        12 G~~v~f~~~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~-------------~~~~~~i~~~~~~~g   78 (281)
T d1k32a2          12 GDRIIFVCCDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGS-------------SLNTADLYFYNGENG   78 (281)
T ss_dssp             TTEEEEEETTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEEST-------------TCCEEEEEEEETTTT
T ss_pred             CCEEEEEeCCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCC-------------CCCceEEEEEEecCC
Confidence            5433323344577777 355 66666554556677899999 4665432 10             011235889998888


Q ss_pred             eEEEeecc-------ccccccEEEeCCCCEEEEEeC
Q 018474          181 ETTVLHEG-------FYFANGIALSKNEDFVVVCES  209 (355)
Q Consensus       181 ~~~~~~~~-------~~~pngi~~~~dg~~l~v~~~  209 (355)
                      +.+.+...       .......+++|||+.++++..
T Consensus        79 ~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  114 (281)
T d1k32a2          79 EIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDA  114 (281)
T ss_dssp             EEEECCCCCEEEETTEECSEEEEECTTCCEEEEECT
T ss_pred             ceEEeeecCCCccCccccccccccCCCCCEEEEEEc
Confidence            87765322       123456789999998888754

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=94.36  E-value=1.9  Score=39.44  Aligned_cols=57  Identities=14%  Similarity=0.172  Sum_probs=39.4

Q ss_pred             ceEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeCCEEEEeecC-----------------CCeEEEeeCCCCCC
Q 018474          292 GARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQ-----------------SNFIGILPLDGPEP  350 (355)
Q Consensus       292 ~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~-----------------~~~i~~~~~~~~~~  350 (355)
                      .+.+..||.++|+.+=.|..+.+.....++  .+.+|+.||.-..                 .+.|..|.|++...
T Consensus       497 dg~l~A~Da~TGe~LW~~~~~~~~~~~P~t--y~~~GkQYv~v~~G~gg~~~~~~~~~~~~~~~~~~~F~l~g~~~  570 (573)
T d1kb0a2         497 DGRLVAYHAATGEKLWEAPTGTGVVAAPST--YMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGGKAR  570 (573)
T ss_dssp             TSEEEEEETTTCCEEEEEECSSCCCSCCEE--EEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETCBCC
T ss_pred             CCeEEEEECCCCcEeEEEECCCCccccCEE--EEECCEEEEEEEeCCCcccccccccccCCCCCEEEEEEeCCcCC
Confidence            357999999899999999887764333333  3468888874322                 24688888876543

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.98  E-value=1.2  Score=36.00  Aligned_cols=221  Identities=12%  Similarity=0.052  Sum_probs=106.6

Q ss_pred             EeeCCCeEEEEecCCEEEEEEcCCCeeEEeecc-CCCcccCeEECCCCCEEEEeCCCcEEEEc-C-CC-eEE-EcCCcCC
Q 018474           59 VVVSKGALYTATRDGWVKYFILHNETLVNWKHI-DSQSLLGLTTTKDGGVILCDNEKGLLKVT-E-EG-VEA-IVPDASF  133 (355)
Q Consensus        59 ~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~-~~~p~~gl~~d~~g~L~v~~~~~gl~~~~-~-~g-~~~-~~~~~~~  133 (355)
                      ++.+++.|..++.||.|..+|..+++....... .+.+. ++.+.+ +.|+.+. .++..++. . .. ... .......
T Consensus        23 ~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~-~v~~~~-~~l~s~s-~D~~~~~~~~~~~~~~~~~~~~~~~   99 (342)
T d2ovrb2          23 LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVW-SSQMRD-NIIISGS-TDRTLKVWNAETGECIHTLYGHTST   99 (342)
T ss_dssp             EEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEE-EEEEET-TEEEEEE-TTSCEEEEETTTTEEEEEECCCSSC
T ss_pred             EEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEE-EEEeCC-Cccccce-ecccccccccccccceeccccccee
Confidence            333477888899999999999988876543321 23455 677754 2344444 44544444 3 22 211 1111111


Q ss_pred             cccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCCCCe
Q 018474          134 TNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESWKFR  213 (355)
Q Consensus       134 ~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~~~~  213 (355)
                      +..... .+..+..+                  ...+.+..++..+++............ .........+.. ....+.
T Consensus       100 ~~~~~~-~~~~~~~~------------------~~d~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~d~~  158 (342)
T d2ovrb2         100 VRCMHL-HEKRVVSG------------------SRDATLRVWDIETGQCLHVLMGHVAAV-RCVQYDGRRVVS-GAYDFM  158 (342)
T ss_dssp             EEEEEE-ETTEEEEE------------------ETTSEEEEEESSSCCEEEEEECCSSCE-EEEEECSSCEEE-EETTSC
T ss_pred             Eeeeec-cccccccc------------------ccceeEEEeecccccceeeeecccccc-eeeccccceeee-ecCCCe
Confidence            111111 11112111                  113456666666665443322221111 222233332333 334566


Q ss_pred             EEEEEeCCCCCcceeEecccCCCCcCceEECCCCCEEEEeecCCchhhHhhhcchhHHHHHHhccchhhcccCCCCCCce
Q 018474          214 CRRYWLKGDRAGILDAFIENLPGGPDNINLAPDGSFWIGLIKMNQTGVRAIQKCREKWELLDAYPGLISLLLPMGSDAGA  293 (355)
Q Consensus       214 i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (355)
                      +..++.....  ....+. ...  ........+|...++....                                    +
T Consensus       159 i~~~d~~~~~--~~~~~~-~~~--~~~~~~~~~~~~l~s~~~d------------------------------------g  197 (342)
T d2ovrb2         159 VKVWDPETET--CLHTLQ-GHT--NRVYSLQFDGIHVVSGSLD------------------------------------T  197 (342)
T ss_dssp             EEEEEGGGTE--EEEEEC-CCS--SCEEEEEECSSEEEEEETT------------------------------------S
T ss_pred             EEEeecccce--eeEEEc-Ccc--cccccccCCCCEEEEEeCC------------------------------------C
Confidence            7777764321  111121 111  1223334456655544331                                    3


Q ss_pred             EEEEEeCCCCeEEEEEECCCCCcccceeEEEEeCCEEEEeecCCCeEEEeeCCCCC
Q 018474          294 RVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIGILPLDGPE  349 (355)
Q Consensus       294 ~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~~~~  349 (355)
                      .|..+|.+.++.+..+..+..    .+..+...++.|+.++. ...|..+++....
T Consensus       198 ~i~~~d~~~~~~~~~~~~~~~----~v~~~~~~~~~l~s~s~-d~~i~iwd~~~~~  248 (342)
T d2ovrb2         198 SIRVWDVETGNCIHTLTGHQS----LTSGMELKDNILVSGNA-DSTVKIWDIKTGQ  248 (342)
T ss_dssp             CEEEEETTTCCEEEEECCCCS----CEEEEEEETTEEEEEET-TSCEEEEETTTCC
T ss_pred             eEEEeecccceeeeEeccccc----ceeEEecCCCEEEEEcC-CCEEEEEeccccc
Confidence            477778756777776655443    34555566676666665 6677777765543

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.27  E-value=2.9  Score=38.09  Aligned_cols=53  Identities=21%  Similarity=0.253  Sum_probs=39.3

Q ss_pred             eEEEEEeCCCCeEEEEEECCCCCcccceeEEEEeCCEEEEee----------------------cCCCeEEEeeCCC
Q 018474          293 ARVVKVDGNDGKIIRDFNDPDATYISFVTSAAEFDGNLYLAS----------------------LQSNFIGILPLDG  347 (355)
Q Consensus       293 ~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~----------------------~~~~~i~~~~~~~  347 (355)
                      +-+..||.++||.+=.+..+.+.....+  ..+.+|+-||.-                      ..++.|.+|.|++
T Consensus       507 g~l~A~Da~TGe~LW~~~~~~~~~~~P~--ty~~~G~qYv~i~ag~g~~~~~~~g~~~~~~~~~~~g~~l~vF~Lp~  581 (582)
T d1flga_         507 GYFKAFDAKSGKELWKFQTGSGIVSPPI--TWEQDGEQYLGVTVGYGGAVPLWGGDMADLTRPVAQGGSFWVFKLPS  581 (582)
T ss_dssp             SEEEEEETTTCCEEEEEECSSCCCSCCE--EEEETTEEEEEEEECCCSHHHHHCTHHHHHHTTCCCCCEEEEEECCC
T ss_pred             CeEEEEECCCCcEeEEEECCCCccccCE--EEEECCEEEEEEEeCCCCccccccccccccccccCCCCEEEEEeCCC
Confidence            5689999989999999988776433333  346788888752                      3467899999875

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.10  E-value=1.6  Score=34.63  Aligned_cols=133  Identities=11%  Similarity=0.014  Sum_probs=64.1

Q ss_pred             EEEEEEcCCCeeEEeeccCCCcccCeEECCCCC-EEEEeCCC---cEEEEcC-CC-eEEEcCCcCCcccEEEccCCcEEE
Q 018474           74 WVKYFILHNETLVNWKHIDSQSLLGLTTTKDGG-VILCDNEK---GLLKVTE-EG-VEAIVPDASFTNDVIAASDGTLYF  147 (355)
Q Consensus        74 ~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~-L~v~~~~~---gl~~~~~-~g-~~~~~~~~~~~~~l~~d~dG~ly~  147 (355)
                      .|+..|......+.+........ .-++.+||+ |.+.....   .++.++. .+ .+.+............+++|..++
T Consensus        20 ~l~i~d~dG~~~~~l~~~~~~~~-sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~   98 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVHRSPQPLM-SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLA   98 (269)
T ss_dssp             EEEEEETTSCSCEEEEEESSCEE-EEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             EEEEEcCCCCCcEEEecCCCcee-eeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeee
Confidence            45555553333444333333333 566888986 43333232   3666664 44 555544445566678889985433


Q ss_pred             EeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEeeccccccccEEEeCCCCEEEEEeCC--CCeEEEEEeCC
Q 018474          148 TVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLHEGFYFANGIALSKNEDFVVVCESW--KFRCRRYWLKG  221 (355)
Q Consensus       148 ~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~~~pngi~~~~dg~~l~v~~~~--~~~i~~~~~~~  221 (355)
                      .....              .....+..+......................+++++.+++....  ...|+.+++++
T Consensus        99 ~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~  160 (269)
T d2hqsa1          99 FALSK--------------TGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING  160 (269)
T ss_dssp             EEECT--------------TSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS
T ss_pred             Eeeec--------------CCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeeccc
Confidence            22110              00112333333233332222222222233566777766666543  33677777654

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.80  E-value=1.9  Score=34.63  Aligned_cols=68  Identities=19%  Similarity=0.243  Sum_probs=41.0

Q ss_pred             CCCceEEEeeCCCeEEEEecCCEEEEEEcCCCe----eEEeeccCCCcccCeEECCCC-CEEEEeCCCc-EEEEc
Q 018474           52 NHPEDVSVVVSKGALYTATRDGWVKYFILHNET----LVNWKHIDSQSLLGLTTTKDG-GVILCDNEKG-LLKVT  120 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~~g~i~~~~~~~g~----~~~~~~~~~~p~~gl~~d~~g-~L~v~~~~~g-l~~~~  120 (355)
                      .+-.+|++.|++..|.+++.||.|..+|..++.    ..........+. ++++.+++ .+.++....+ +...+
T Consensus        12 d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~-~v~f~~~~~~~l~sg~~d~~v~~w~   85 (342)
T d1yfqa_          12 DYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLL-CCNFIDNTDLQIYVGTVQGEILKVD   85 (342)
T ss_dssp             SCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEE-EEEEEESSSEEEEEEETTSCEEEEC
T ss_pred             CCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEE-EEEEeCCCCCEEEEcccccceeeee
Confidence            344789999888888889999999888864432    111112234456 78876554 4443332334 44445

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.17  E-value=4.1  Score=37.04  Aligned_cols=59  Identities=12%  Similarity=0.210  Sum_probs=43.0

Q ss_pred             CCeEEEEecCCEEEEEEcCCCeeE-Eeecc---CC------CcccCeEECCCCCEEEEeCCCcEEEEc-CCC
Q 018474           63 KGALYTATRDGWVKYFILHNETLV-NWKHI---DS------QSLLGLTTTKDGGVILCDNEKGLLKVT-EEG  123 (355)
Q Consensus        63 ~g~l~~~~~~g~i~~~~~~~g~~~-~~~~~---~~------~p~~gl~~d~~g~L~v~~~~~gl~~~~-~~g  123 (355)
                      +|.+|+++.++.|+.+|+++|+.. ++...   ..      ... +++.. ++++|+++....++.+| ++|
T Consensus        68 ~g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~r-g~a~~-~~~i~~~t~~~~l~alda~tG  137 (582)
T d1flga_          68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNR-GAAIY-GDKVFFGTLDASVVALNKNTG  137 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCC-CCEEE-TTEEEEEETTTEEEEEESSSC
T ss_pred             CCEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccC-CceEe-CCceEEecCCCeEEEeccccc
Confidence            789999999999999999999764 12111   01      122 45554 67899999887899999 477

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=91.43  E-value=2.3  Score=35.81  Aligned_cols=121  Identities=13%  Similarity=0.093  Sum_probs=73.3

Q ss_pred             CceEEEeeCCCeEEE-Eec-----CC------EEEEEEcCCCeeEEeecc--C--CCcccCeEECCCCCEEEEeCC--Cc
Q 018474           54 PEDVSVVVSKGALYT-ATR-----DG------WVKYFILHNETLVNWKHI--D--SQSLLGLTTTKDGGVILCDNE--KG  115 (355)
Q Consensus        54 p~~i~~d~~~g~l~~-~~~-----~g------~i~~~~~~~g~~~~~~~~--~--~~p~~gl~~d~~g~L~v~~~~--~g  115 (355)
                      +...+..+.+|.+|+ +..     .+      .+..+|+++++++.....  .  .... +.++..+|++|++...  +.
T Consensus        21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~-~~~~~~~g~i~v~Gg~~~~~   99 (387)
T d1k3ia3          21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCP-GISMDGNGQIVVTGGNDAKK   99 (387)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSC-EEEECTTSCEEEECSSSTTC
T ss_pred             ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCccccee-EEEEecCCcEEEeecCCCcc
Confidence            444455546777776 321     11      356899999987654221  1  1233 5677889999997533  35


Q ss_pred             EEEEcC-CC-eEEEcCCc--CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee
Q 018474          116 LLKVTE-EG-VEAIVPDA--SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH  186 (355)
Q Consensus       116 l~~~~~-~g-~~~~~~~~--~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~  186 (355)
                      +.++|+ ++ .+......  ..-...++..||++|+......           .+.....+.+|||.+++++.+.
T Consensus       100 ~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~-----------~~~~~~~v~~yd~~~~~W~~~~  163 (387)
T d1k3ia3         100 TSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWS-----------GGVFEKNGEVYSPSSKTWTSLP  163 (387)
T ss_dssp             EEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCC-----------SSSCCCCEEEEETTTTEEEEET
T ss_pred             eeEecCccCcccccccccccccccceeeecCCceeeeccccc-----------cccccceeeeecCCCCceeecC
Confidence            778884 55 44443322  3445677888999998754310           0112346889999999987653

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=91.21  E-value=5.3  Score=36.42  Aligned_cols=110  Identities=18%  Similarity=0.099  Sum_probs=62.6

Q ss_pred             CCeEEEEec-CCEEEEEEc-CCCeeE-Eeecc----------CCC-cccCeEECCC-----CCEEEEeCCCcEEEEc-CC
Q 018474           63 KGALYTATR-DGWVKYFIL-HNETLV-NWKHI----------DSQ-SLLGLTTTKD-----GGVILCDNEKGLLKVT-EE  122 (355)
Q Consensus        63 ~g~l~~~~~-~g~i~~~~~-~~g~~~-~~~~~----------~~~-p~~gl~~d~~-----g~L~v~~~~~gl~~~~-~~  122 (355)
                      +|.+|+++. .+.++.+|. ++|+.. ++...          +.. -. |++.-.+     .++|+++....|+.+| ++
T Consensus        62 ~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~R-Gv~~~~~~~~~~~~v~~~t~dg~l~Alda~t  140 (596)
T d1w6sa_          62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNR-GLAYWPGDGKTPALILKTQLDGNVAALNAET  140 (596)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCC-CCEEECCCSSSCCEEEEECTTSEEEEEETTT
T ss_pred             CCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccc-eeEEecCCCCCceEEEEEeCCCCeEeecccc
Confidence            778998765 578999996 578644 12110          011 13 6665321     2488888777899999 57


Q ss_pred             C--eEEEcC-Cc---CCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEe
Q 018474          123 G--VEAIVP-DA---SFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVL  185 (355)
Q Consensus       123 g--~~~~~~-~~---~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~  185 (355)
                      |  +-.... ..   ..+..--.--++.+++..+..            +....|.|..||.+||+....
T Consensus       141 G~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~------------e~~~~G~v~A~Da~TG~~~W~  197 (596)
T d1w6sa_         141 GETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGA------------ELGVRGYLTAYDVKTGEQVWR  197 (596)
T ss_dssp             CCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCG------------GGTCCCEEEEEETTTCCEEEE
T ss_pred             CceeccccccccccccccccCCcEECCeEEEeeccc------------cccccCceEEEECCCCcEEEE
Confidence            7  322211 11   111110011256788765442            123357899999999987643

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.42  E-value=5.3  Score=35.06  Aligned_cols=68  Identities=4%  Similarity=-0.068  Sum_probs=38.5

Q ss_pred             CCCceEEEeeCCCeEEEEec---------CCEEEEEEcCCCeeEEeeccCC---CcccCeEECCCCCEEEEeCCCcEEEE
Q 018474           52 NHPEDVSVVVSKGALYTATR---------DGWVKYFILHNETLVNWKHIDS---QSLLGLTTTKDGGVILCDNEKGLLKV  119 (355)
Q Consensus        52 ~~p~~i~~d~~~g~l~~~~~---------~g~i~~~~~~~g~~~~~~~~~~---~p~~gl~~d~~g~L~v~~~~~gl~~~  119 (355)
                      ..+....+.|++..+++...         .+.++.+|..+++.+.+.....   ... -..+.++|+-.+-...+.|+..
T Consensus        61 ~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~-~~~wSPDG~~iafv~~~nl~~~  139 (465)
T d1xfda1          61 LRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQ-YAGWGPKGQQLIFIFENNIYYC  139 (465)
T ss_dssp             TTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCS-BCCBCSSTTCEEEEETTEEEEE
T ss_pred             cccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccc-eeeeccCCceEEEEecceEEEE
Confidence            35667778876777666542         4667788888887766543221   112 2345667652221223456666


Q ss_pred             c
Q 018474          120 T  120 (355)
Q Consensus       120 ~  120 (355)
                      +
T Consensus       140 ~  140 (465)
T d1xfda1         140 A  140 (465)
T ss_dssp             S
T ss_pred             e
Confidence            6

>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=87.99  E-value=3.3  Score=35.68  Aligned_cols=111  Identities=9%  Similarity=0.045  Sum_probs=64.2

Q ss_pred             CCCcccCeEECCC--CCEEEEeCCCcEEEEcCCC--eEEEcCCc-------CCcccEEEccC--CcEEEEeCCCCCCCcc
Q 018474           92 DSQSLLGLTTTKD--GGVILCDNEKGLLKVTEEG--VEAIVPDA-------SFTNDVIAASD--GTLYFTVASTKYTPTD  158 (355)
Q Consensus        92 ~~~p~~gl~~d~~--g~L~v~~~~~gl~~~~~~g--~~~~~~~~-------~~~~~l~~d~d--G~ly~~d~~~~~~~~~  158 (355)
                      +++.. +|++++.  +.+|++...+|+++-...|  -+.+....       ..+.+|++||.  ..||++....      
T Consensus        11 gg~~~-~i~~~P~~~~~~ya~~~~gGv~~S~dgG~tW~~~~~~~~~~~~~~~~~~~iavdp~np~~vy~~tg~~------   83 (427)
T d2ebsa1          11 GGYIT-GIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRY------   83 (427)
T ss_dssp             CSCEE-EEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSC------
T ss_pred             CCcEE-EEEECCCCCCEEEEEecCCCEEEEECCCCceEECCCCCCCCCcccccEeEEEECCCCCCEEEEEeccc------
Confidence            45677 8999865  3689988777898876544  44432211       45678999986  4788875331      


Q ss_pred             ccccccccCCCCeEEEEeCCCCeEEEeeccc---------cccccEEEeCCC-CEEEEEeCCCCeEEE
Q 018474          159 FYKDMAEGKPYGQLRKYDPKLKETTVLHEGF---------YFANGIALSKNE-DFVVVCESWKFRCRR  216 (355)
Q Consensus       159 ~~~~~~~~~~~g~l~~~dp~~~~~~~~~~~~---------~~pngi~~~~dg-~~l~v~~~~~~~i~~  216 (355)
                            .+...+++++=.-....++.+....         .....++++|.. +.+|++ +..++|++
T Consensus        84 ------~~~~~~gi~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~-~~~~gl~~  144 (427)
T d2ebsa1          84 ------VGDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMG-TRTEGIWK  144 (427)
T ss_dssp             ------TTSSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEE-CSSSCEEE
T ss_pred             ------cCCcCccEEEeCCCCccceeecCCcccCccccCccceeEEEECCCccCccccc-ccccceee
Confidence                  0112345655433344555543221         112358888854 456654 44566765

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=85.53  E-value=6.9  Score=30.66  Aligned_cols=45  Identities=22%  Similarity=0.277  Sum_probs=26.4

Q ss_pred             CCeEEEEEECCCCCcccceeEEEEeCCEEEEeecCCCeEE-EeeCCCCCCCcC
Q 018474          302 DGKIIRDFNDPDATYISFVTSAAEFDGNLYLASLQSNFIG-ILPLDGPEPQLA  353 (355)
Q Consensus       302 ~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~-~~~~~~~~~~~~  353 (355)
                      +|+.   +..|.|    ..+.+...++++|++...-..=. ...|++-+|.+|
T Consensus       266 nGk~---in~p~G----~~~gat~i~~~iyfshsSL~tP~kI~~~~~~~~~~~  311 (313)
T d2hu7a1         266 DGER---VEAPQG----NHGRVVLWRGKLVTSHTSLSTPPRIVSLPSGEPLLE  311 (313)
T ss_dssp             TTEE---ECCCSS----EEEEEEEETTEEEEEEEETTEEEEEEEETTCCEEEC
T ss_pred             cceE---ecCCCC----cccceEEECCEEEEeecccCCCceeEEcCCCCcccc
Confidence            4553   345555    56677888999999743322222 334666666554

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.64  E-value=7.2  Score=30.08  Aligned_cols=63  Identities=14%  Similarity=0.095  Sum_probs=38.9

Q ss_pred             eEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeecc-CCCcccCeEECCCCCEEEEeCCCc-EEEEc-CCC
Q 018474           56 DVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHI-DSQSLLGLTTTKDGGVILCDNEKG-LLKVT-EEG  123 (355)
Q Consensus        56 ~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~-~~~p~~gl~~d~~g~L~v~~~~~g-l~~~~-~~g  123 (355)
                      ++.+  ++..|+.++.||.|..+|..+++....... .+.+. ++.+  +++++++...++ +...+ ..+
T Consensus        20 c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~-~v~~--~~~~l~s~s~D~~i~~~~~~~~   85 (293)
T d1p22a2          20 CLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVL-CLQY--DERVIITGSSDSTVRVWDVNTG   85 (293)
T ss_dssp             EEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEE-EEEC--CSSEEEEEETTSCEEEEESSSC
T ss_pred             EEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEe-eeec--ccceeecccccccccccccccc
Confidence            4444  477888899999999999988876554332 23455 6665  455544433444 44445 344

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=83.66  E-value=8.5  Score=30.14  Aligned_cols=134  Identities=13%  Similarity=0.160  Sum_probs=71.7

Q ss_pred             eEEEeeCCCeEEEEecCCEEEEEEcCCCeeEEeeccCCCcccCeEECCCCCEEEEeC---C--CcEEEEcC-CC-eEEEc
Q 018474           56 DVSVVVSKGALYTATRDGWVKYFILHNETLVNWKHIDSQSLLGLTTTKDGGVILCDN---E--KGLLKVTE-EG-VEAIV  128 (355)
Q Consensus        56 ~i~~d~~~g~l~~~~~~g~i~~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v~~~---~--~gl~~~~~-~g-~~~~~  128 (355)
                      +++.| +....|++....+...+-.+.|+++++...  .|. ++..|-+|.+..+-.   +  ..++.-|- .| ++.+.
T Consensus       108 S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~v--PpF-sFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lri~t  183 (313)
T d2hu7a1         108 SGVDT-GEAVVFTGATEDRVALYALDGGGLRELARL--PGF-GFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFD  183 (313)
T ss_dssp             EEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEE--SSC-EEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEEEEC
T ss_pred             Eeeec-CceEEEecccCCceEEEEEeCCceeeeccC--CCc-ceEEeccCCeEEEEeeecCCcceEEEEecccCCEEEec
Confidence            66677 677888887766666666667888876543  244 555554555444321   0  11222232 44 55554


Q ss_pred             CCcCCcccEEEccCCcEEEEeCCCCCCCccccccccccCCCCeEEEEeCCCCeEEEee-cc----ccccccEE---EeCC
Q 018474          129 PDASFTNDVIAASDGTLYFTVASTKYTPTDFYKDMAEGKPYGQLRKYDPKLKETTVLH-EG----FYFANGIA---LSKN  200 (355)
Q Consensus       129 ~~~~~~~~l~~d~dG~ly~~d~~~~~~~~~~~~~~~~~~~~g~l~~~dp~~~~~~~~~-~~----~~~pngi~---~~~d  200 (355)
                      ......+.-...+...+ ++|-              |.........+|+.+++++.+. ..    ...|..|.   .+||
T Consensus       184 pkeGS~~~ay~~~gnKV-~sdy--------------Et~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pd  248 (313)
T d2hu7a1         184 SGEGSFSSASISPGMKV-TAGL--------------ETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPD  248 (313)
T ss_dssp             CSSEEEEEEEECTTSCE-EEEE--------------EESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTT
T ss_pred             CCCCcccceeEccCcee-eecc--------------CCCCceEEEEEecccCceeeeecCcccceeecceEEEeeeeCCC
Confidence            44333333344444444 3321              1111224456799888877652 11    12455555   8899


Q ss_pred             CCEEEEEe
Q 018474          201 EDFVVVCE  208 (355)
Q Consensus       201 g~~l~v~~  208 (355)
                      ++.++++-
T Consensus       249 d~L~iiak  256 (313)
T d2hu7a1         249 GRLAVVAR  256 (313)
T ss_dssp             SCEEEEEE
T ss_pred             CcEEEEEe
Confidence            98556654