Citrus Sinensis ID: 018477

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-----
MMMAIIFFLSTKLFGFDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAIAGRIPLLTPITMENKRYLETKRAKMGHVYGLNSGSHGDGSISDDGNSSIDGSSGGVSET
ccccccccccccEEEEEccccccccccHHHHHHHHHHHHccccccccccccccccccccccccEEEccccHHHHHHHHHHHcccccEEEEEEEccccccccHHHHHHHHHHccccEEcHHHHHHHHHHccccEEEEEEEccccccccEEEEEEEEcccccEEEEEEccccccccccEEEEccccccHHHccccccccHHHHHHHHHHHHHHccEEEEEEcccccccccHHHHHHHHHccccccccHHHHHHcccccccHHHHHHHHHHHHccccEEEEcccccccccccccccEEEEEEEEccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccc
ccEEccccccEEEEEEEccccccccccHHHHHHHHHHHHcccccHHHEEEEEEEEEEEccccHHHccccHHHHHHHHHHHcccccEEEEEEEEEcccccccHHHHHHHHHHcccEEEEHHHHHHHHHHHccHEEEEEEEccccccccEEEEEEEEEccccEEEEEEEccccccccEEEEEEccccccccccccccccHHHHHHHHHHHHHcccEEEEEEccccccHHHHHHHHHHHHHHHccccHHHHHHHccccHcHHHHcHHHHHHHHHcccEEEEEEccccHEEccccccEEEEEcccEEEcccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccc
MMMAIIFFLSTklfgfdakygtttgvsanDRAKTVLALAcrdskpedfnrpghifplkyreggvlkraghteaSVDLAVLAGLEPVAVLCEIvdddgsmarlpkLRQFAQTENLKIISIADLIRYRRKRDRLVELAaaapiptmwgpfkaHCYRSLLDGIEHIAMVkgeigdgqDILVRVHSecltgdifgsarcdCGNQLALAMKQIEAAGRGVLVYLRghegrgiglghklraynlqddghdtveaneelglpvdsreygigAQILRDLGVRTMklmtnnpskyvglkgyglaiagriplltpitmENKRYLETKRAkmghvyglnsgshgdgsisddgnssidgssggvset
MMMAIIFFLSTKLFGFDAKYGtttgvsandrAKTVLALAcrdskpedfnrpghifpLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLrqfaqtenlkiisiadliRYRRKRDRLVELAAaapiptmwgpfKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEElglpvdsreygIGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAIAGRiplltpitMENKRYLETKRAKMGHVYGLNSGShgdgsisddgnssidgssggvset
MMMAIIFFLSTKLFGFDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAIAGRIPLLTPITMENKRYLETKRAKMGHVYGLnsgshgdgsisddgnssidgssggVSET
**MAIIFFLSTKLFGFDAKYGTTTGVSANDRAKTVLALACRDSK*EDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAIAGRIPLLTPITMENKRYLETKRAKMGHVYG*****************************
**MAIIFFLSTKLFGFDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAIAGRIPLLTPITMENKRYLETKRAKMGHVYGL****************************
MMMAIIFFLSTKLFGFDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAIAGRIPLLTPITMENKRYLETKRAKMGHVYGLNSGSHGDGSISDDG**************
*MMAIIFFLSTKLFGFDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAIAGRIPLLTPITMENKRYLETKRAKMGHVYGLN***************************
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oooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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SSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MMMAIIFFLSTKLFGFDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAIAGRIPLLTPITMENKRYLETKRAKMGHVYGLNSGSHGDGSISDDGNSSIDGSSGGVSET
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query355 2.2.26 [Sep-21-2011]
P47924543 Riboflavin biosynthesis p yes no 0.876 0.572 0.884 1e-164
Q0AXM5398 Riboflavin biosynthesis p yes no 0.853 0.761 0.628 1e-107
O66679406 Riboflavin biosynthesis p yes no 0.864 0.756 0.605 1e-106
Q5WH08397 Riboflavin biosynthesis p yes no 0.859 0.768 0.598 1e-106
A4X639400 Riboflavin biosynthesis p yes no 0.884 0.785 0.576 1e-105
A8LY38420 Riboflavin biosynthesis p yes no 0.870 0.735 0.588 1e-104
Q9Z734418 Riboflavin biosynthesis p yes no 0.890 0.755 0.572 1e-104
B1MCA4417 Riboflavin biosynthesis p yes no 0.904 0.769 0.579 1e-103
C0ZKW2399 Riboflavin biosynthesis p yes no 0.861 0.766 0.599 1e-103
Q741F1425 Riboflavin biosynthesis p N/A no 0.867 0.724 0.592 1e-101
>sp|P47924|RIBBA_ARATH Riboflavin biosynthesis protein ribBA, chloroplastic OS=Arabidopsis thaliana GN=RIBBA PE=2 SV=2 Back     alignment and function desciption
 Score =  578 bits (1489), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 275/311 (88%), Positives = 293/311 (94%)

Query: 17  DAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVD 76
           DAK+GTTTGVSA DRA T+L+LA RDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVD
Sbjct: 217 DAKHGTTTGVSARDRATTILSLASRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVD 276

Query: 77  LAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELA 136
           L VLAGL+PV VLCEIVDDDGSMARLPKLR+FA   NLK++SIADLIRYRRKRD+LVE A
Sbjct: 277 LTVLAGLDPVGVLCEIVDDDGSMARLPKLREFAAENNLKVVSIADLIRYRRKRDKLVERA 336

Query: 137 AAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCD 196
           +AA IPTMWGPF A+CYRS+LDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCD
Sbjct: 337 SAARIPTMWGPFTAYCYRSILDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCD 396

Query: 197 CGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPV 256
           CGNQLAL+M+QIEA GRGVLVYLRGHEGRGIGLGHKLRAYNLQD G DTVEANEELGLPV
Sbjct: 397 CGNQLALSMQQIEATGRGVLVYLRGHEGRGIGLGHKLRAYNLQDAGRDTVEANEELGLPV 456

Query: 257 DSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAIAGRIPLLTPITMENKRYLET 316
           DSREYGIGAQI+RDLGVRTMKLMTNNP+KYVGLKGYGLAI GR+PLL+ IT ENKRYLET
Sbjct: 457 DSREYGIGAQIIRDLGVRTMKLMTNNPAKYVGLKGYGLAIVGRVPLLSLITKENKRYLET 516

Query: 317 KRAKMGHVYGL 327
           KR KMGH+YGL
Sbjct: 517 KRTKMGHMYGL 527
Catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 5EC: .EC: 4EC: .EC: 2EC: 5
>sp|Q0AXM5|RIBBA_SYNWW Riboflavin biosynthesis protein RibBA OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=ribBA PE=3 SV=1 Back     alignment and function description
>sp|O66679|RIBBA_AQUAE Riboflavin biosynthesis protein RibBA OS=Aquifex aeolicus (strain VF5) GN=ribBA PE=3 SV=1 Back     alignment and function description
>sp|Q5WH08|RIBBA_BACSK Riboflavin biosynthesis protein RibBA OS=Bacillus clausii (strain KSM-K16) GN=ribBA PE=3 SV=1 Back     alignment and function description
>sp|A4X639|RIBBA_SALTO Riboflavin biosynthesis protein RibBA OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=ribBA PE=3 SV=1 Back     alignment and function description
>sp|A8LY38|RIBBA_SALAI Riboflavin biosynthesis protein RibBA OS=Salinispora arenicola (strain CNS-205) GN=ribBA PE=3 SV=1 Back     alignment and function description
>sp|Q9Z734|RIBBA_CHLPN Riboflavin biosynthesis protein RibBA OS=Chlamydia pneumoniae GN=ribBA PE=3 SV=1 Back     alignment and function description
>sp|B1MCA4|RIBBA_MYCA9 Riboflavin biosynthesis protein RibBA OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=ribBA PE=3 SV=1 Back     alignment and function description
>sp|C0ZKW2|RIBBA_BREBN Riboflavin biosynthesis protein RibBA OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=ribBA PE=3 SV=1 Back     alignment and function description
>sp|Q741F1|RIBBA_MYCPA Riboflavin biosynthesis protein RibBA OS=Mycobacterium paratuberculosis (strain ATCC BAA-968 / K-10) GN=ribBA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query355
224096145449 predicted protein [Populus trichocarpa] 0.898 0.710 0.912 1e-169
33308405 539 GTP cyclohydrolase II/3,4-dihydroxy-2-bu 0.952 0.627 0.858 1e-168
225465770 559 PREDICTED: riboflavin biosynthesis prote 0.977 0.620 0.830 1e-167
296087438 845 unnamed protein product [Vitis vinifera] 0.977 0.410 0.830 1e-167
224055964 552 predicted protein [Populus trichocarpa] 0.918 0.590 0.852 1e-166
255587021 531 GTP cyclohydrolase II, putative [Ricinus 0.870 0.581 0.919 1e-165
357476315 535 GTP cyclohydrolase II/3 4-dihydroxy-2-bu 0.923 0.613 0.857 1e-165
356525856 544 PREDICTED: riboflavin biosynthesis prote 0.912 0.595 0.868 1e-165
356528022 546 PREDICTED: riboflavin biosynthesis prote 0.923 0.600 0.847 1e-164
359480493 534 PREDICTED: riboflavin biosynthesis prote 0.898 0.597 0.878 1e-164
>gi|224096145|ref|XP_002310549.1| predicted protein [Populus trichocarpa] gi|222853452|gb|EEE90999.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  600 bits (1546), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 291/319 (91%), Positives = 301/319 (94%)

Query: 14  FGFDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEA 73
              DAK GTTTGVSA DRA TVLALA +DS PEDFNRPGHIFPLKYREGGVLKRAGHTEA
Sbjct: 129 ISVDAKCGTTTGVSARDRAITVLALASKDSIPEDFNRPGHIFPLKYREGGVLKRAGHTEA 188

Query: 74  SVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLV 133
           SVDL +LAGLEPVAVLCEIVDDDGSMARLP+LRQFAQ ENLKIISIADLIRYRRKRDRLV
Sbjct: 189 SVDLTMLAGLEPVAVLCEIVDDDGSMARLPRLRQFAQAENLKIISIADLIRYRRKRDRLV 248

Query: 134 ELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSA 193
           ELAAAAPIPTMWGPFKA+CYRSLLDGIEHIAMVKGEIGDG+DILVRVHSECLTGDIFGSA
Sbjct: 249 ELAAAAPIPTMWGPFKAYCYRSLLDGIEHIAMVKGEIGDGKDILVRVHSECLTGDIFGSA 308

Query: 194 RCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELG 253
           RCDCG QLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDG DTVEANEELG
Sbjct: 309 RCDCGKQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELG 368

Query: 254 LPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAIAGRIPLLTPITMENKRY 313
           LPVDSREYGIGAQILRDLGV TMKLMTNNP+KYVGLKGYGLA+AGR+PLLTPITMEN+RY
Sbjct: 369 LPVDSREYGIGAQILRDLGVHTMKLMTNNPAKYVGLKGYGLAVAGRVPLLTPITMENRRY 428

Query: 314 LETKRAKMGHVYGLNSGSH 332
           LETKR KMGHVYG +   H
Sbjct: 429 LETKREKMGHVYGSDINGH 447

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|33308405|gb|AAQ03091.1| GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4-phosphate synthase [Malus x domestica] Back     alignment and taxonomy information
>gi|225465770|ref|XP_002267374.1| PREDICTED: riboflavin biosynthesis protein ribBA, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|296087438|emb|CBI34027.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224055964|ref|XP_002298707.1| predicted protein [Populus trichocarpa] gi|222845965|gb|EEE83512.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255587021|ref|XP_002534102.1| GTP cyclohydrolase II, putative [Ricinus communis] gi|223525850|gb|EEF28284.1| GTP cyclohydrolase II, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357476315|ref|XP_003608443.1| GTP cyclohydrolase II/3 4-dihydroxy-2-butanone 4-phosphate synthase [Medicago truncatula] gi|355509498|gb|AES90640.1| GTP cyclohydrolase II/3 4-dihydroxy-2-butanone 4-phosphate synthase [Medicago truncatula] Back     alignment and taxonomy information
>gi|356525856|ref|XP_003531537.1| PREDICTED: riboflavin biosynthesis protein ribBA, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|356528022|ref|XP_003532604.1| PREDICTED: riboflavin biosynthesis protein ribBA, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|359480493|ref|XP_002266093.2| PREDICTED: riboflavin biosynthesis protein ribBA, chloroplastic-like [Vitis vinifera] gi|297741836|emb|CBI33149.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query355
TAIR|locus:2173373543 GCH "GTP cyclohydrolase II" [A 0.876 0.572 0.884 2.1e-148
TAIR|locus:2041253476 RIBA2 "homolog of ribA 2" [Ara 0.788 0.588 0.756 1.5e-113
TIGR_CMR|CHY_1473401 CHY_1473 "3,4-dihydroxy-2-buta 0.859 0.760 0.620 2.1e-100
UNIPROTKB|P0A5V0425 ribBA "Riboflavin biosynthesis 0.864 0.722 0.587 6.1e-94
TIGR_CMR|BA_4333397 BA_4333 "3,4-dihydroxy-2-butan 0.859 0.768 0.588 9e-93
TIGR_CMR|GSU_1690400 GSU_1690 "3,4-dihydroxy-2-buta 0.864 0.767 0.568 1e-91
TIGR_CMR|DET_1188403 DET_1188 "3,4-dihydroxy-2-buta 0.864 0.761 0.568 4.1e-88
TIGR_CMR|CBU_0647387 CBU_0647 "riboflavin biosynthe 0.878 0.806 0.523 4.1e-81
UNIPROTKB|Q9KPU3369 VC_2269 "3,4-dihydroxy-2-butan 0.769 0.739 0.451 1e-52
TIGR_CMR|VC_2269369 VC_2269 "3,4-dihydroxy-2-butan 0.769 0.739 0.451 1e-52
TAIR|locus:2173373 GCH "GTP cyclohydrolase II" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1449 (515.1 bits), Expect = 2.1e-148, P = 2.1e-148
 Identities = 275/311 (88%), Positives = 293/311 (94%)

Query:    17 DAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVD 76
             DAK+GTTTGVSA DRA T+L+LA RDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVD
Sbjct:   217 DAKHGTTTGVSARDRATTILSLASRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVD 276

Query:    77 LAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELA 136
             L VLAGL+PV VLCEIVDDDGSMARLPKLR+FA   NLK++SIADLIRYRRKRD+LVE A
Sbjct:   277 LTVLAGLDPVGVLCEIVDDDGSMARLPKLREFAAENNLKVVSIADLIRYRRKRDKLVERA 336

Query:   137 AAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCD 196
             +AA IPTMWGPF A+CYRS+LDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCD
Sbjct:   337 SAARIPTMWGPFTAYCYRSILDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCD 396

Query:   197 CGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPV 256
             CGNQLAL+M+QIEA GRGVLVYLRGHEGRGIGLGHKLRAYNLQD G DTVEANEELGLPV
Sbjct:   397 CGNQLALSMQQIEATGRGVLVYLRGHEGRGIGLGHKLRAYNLQDAGRDTVEANEELGLPV 456

Query:   257 DSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAIAGRIPLLTPITMENKRYLET 316
             DSREYGIGAQI+RDLGVRTMKLMTNNP+KYVGLKGYGLAI GR+PLL+ IT ENKRYLET
Sbjct:   457 DSREYGIGAQIIRDLGVRTMKLMTNNPAKYVGLKGYGLAIVGRVPLLSLITKENKRYLET 516

Query:   317 KRAKMGHVYGL 327
             KR KMGH+YGL
Sbjct:   517 KRTKMGHMYGL 527
GO:0003935 "GTP cyclohydrolase II activity" evidence=IEA;IGI;ISS
GO:0008686 "3,4-dihydroxy-2-butanone-4-phosphate synthase activity" evidence=IEA;IGI;ISS
GO:0009231 "riboflavin biosynthetic process" evidence=IEA;IGI;ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0016020 "membrane" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0048767 "root hair elongation" evidence=RCA
TAIR|locus:2041253 RIBA2 "homolog of ribA 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1473 CHY_1473 "3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
UNIPROTKB|P0A5V0 ribBA "Riboflavin biosynthesis protein RibBA" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
TIGR_CMR|BA_4333 BA_4333 "3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_1690 GSU_1690 "3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|DET_1188 DET_1188 "3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_0647 CBU_0647 "riboflavin biosynthesis protein RibA" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KPU3 VC_2269 "3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2269 VC_2269 "3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
C5D3N0RIBBA_GEOSW3, ., 5, ., 4, ., 2, 50.58410.85070.7607yesno
B0K0Y9RIBBA_THEPX3, ., 5, ., 4, ., 2, 50.56620.84220.7550yesno
C3LIX7RIBBA_BACAC3, ., 5, ., 4, ., 2, 50.58820.85910.7682yesno
Q5WH08RIBBA_BACSK3, ., 5, ., 4, ., 2, 50.59800.85910.7682yesno
C3P7P7RIBBA_BACAA3, ., 5, ., 4, ., 2, 50.58820.85910.7682yesno
A4TC13RIBBA_MYCGI3, ., 5, ., 4, ., 2, 50.55390.91540.7683yesno
Q635H0RIBBA_BACCZ3, ., 5, ., 4, ., 2, 50.58820.85910.7682yesno
Q5YTP3RIBBA_NOCFA3, ., 5, ., 4, ., 2, 50.59350.86760.7439yesno
A0RIB3RIBBA_BACAH3, ., 5, ., 4, ., 2, 50.58820.85910.7682yesno
B7IWM5RIBBA_BACC23, ., 5, ., 4, ., 2, 50.58490.85910.7682yesno
A4QEG9RIBBA_CORGB3, ., 5, ., 4, ., 2, 50.57370.86470.7274yesno
A5U2B7RIBBA_MYCTA3, ., 5, ., 4, ., 2, 50.58590.86760.7247yesno
C0ZKW2RIBBA_BREBN3, ., 5, ., 4, ., 2, 50.59930.86190.7669yesno
P0A5V0RIBBA_MYCTU3, ., 5, ., 4, ., 2, 50.58590.86760.7247yesno
P0A5V1RIBBA_MYCBO3, ., 5, ., 4, ., 2, 50.58590.86760.7247yesno
A4SFY4RIBBA_PROVI3, ., 5, ., 4, ., 2, 50.58190.87320.7560yesno
A4X639RIBBA_SALTO3, ., 5, ., 4, ., 2, 50.57640.88450.785yesno
Q818X6RIBBA_BACCR3, ., 5, ., 4, ., 2, 50.58820.85910.7682yesno
Q9Z734RIBBA_CHLPN3, ., 5, ., 4, ., 2, 50.57270.89010.7559yesno
B7JLW6RIBBA_BACC03, ., 5, ., 4, ., 2, 50.58820.85910.7682yesno
A1KIK4RIBBA_MYCBP3, ., 5, ., 4, ., 2, 50.58590.86760.7247yesno
C1AN60RIBBA_MYCBT3, ., 5, ., 4, ., 2, 50.58590.86760.7247yesno
O66679RIBBA_AQUAE3, ., 5, ., 4, ., 2, 50.60580.86470.7561yesno
B7HAY4RIBBA_BACC43, ., 5, ., 4, ., 2, 50.58490.85910.7682yesno
P47924RIBBA_ARATH3, ., 5, ., 4, ., 2, 50.88420.87600.5727yesno
C1EQY5RIBBA_BACC33, ., 5, ., 4, ., 2, 50.58820.85910.7682yesno
B7HNM8RIBBA_BACC73, ., 5, ., 4, ., 2, 50.58490.85910.7682yesno
Q3B2I6RIBBA_PELLD3, ., 5, ., 4, ., 2, 50.59210.85350.7408yesno
P17620RIBBA_BACSU3, ., 5, ., 4, ., 2, 50.58220.85070.7587yesno
Q0AXM5RIBBA_SYNWW3, ., 5, ., 4, ., 2, 50.62820.85350.7613yesno
A8LY38RIBBA_SALAI3, ., 5, ., 4, ., 2, 50.58890.87040.7357yesno
Q8NQ52RIBBA_CORGL3, ., 5, ., 4, ., 2, 50.57370.86470.7274yesno
B9IWX4RIBBA_BACCQ3, ., 5, ., 4, ., 2, 50.58490.85910.7682yesno
B4S5Y8RIBBA_PROA23, ., 5, ., 4, ., 2, 50.56820.87880.7410yesno
A9VG50RIBBA_BACWK3, ., 5, ., 4, ., 2, 50.58490.85910.7682yesno
B1MCA4RIBBA_MYCA93, ., 5, ., 4, ., 2, 50.57920.90420.7697yesno
A1T8K1RIBBA_MYCVP3, ., 5, ., 4, ., 2, 50.58590.86760.7281yesno
B2HP67RIBBA_MYCMM3, ., 5, ., 4, ., 2, 50.59550.86760.7247yesno
C0ZZE5RIBBA_RHOE43, ., 5, ., 4, ., 2, 50.58590.86760.7264yesno
A0Q3H7RIBBA_CLONN3, ., 5, ., 4, ., 2, 50.54400.89290.7657yesno
Q0S0K2RIBBA_RHOSR3, ., 5, ., 4, ., 2, 50.57360.89850.7649yesno
Q81MB6RIBBA_BACAN3, ., 5, ., 4, ., 2, 50.58820.85910.7682yesno
B4SE30RIBBA_PELPB3, ., 5, ., 4, ., 2, 50.57090.87040.7374yesno
Q731I5RIBBA_BACC13, ., 5, ., 4, ., 2, 50.58490.85910.7682yesno
A7GSD5RIBBA_BACCN3, ., 5, ., 4, ., 2, 50.58300.86190.7707yesno
A0QI09RIBBA_MYCA13, ., 5, ., 4, ., 2, 50.59100.86470.7223yesno
A0PPL6RIBBA_MYCUA3, ., 5, ., 4, ., 2, 50.59230.86760.7247yesno
Q6HE54RIBBA_BACHK3, ., 5, ., 4, ., 2, 50.58820.85910.7682yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer4.1.99.120.914
3rd Layer3.5.40.921
3rd Layer4.1.990.921
3rd Layer3.5.4.250.914

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query355
PLN02831450 PLN02831, PLN02831, Bifunctional GTP cyclohydrolas 0.0
PRK09311402 PRK09311, PRK09311, bifunctional 3,4-dihydroxy-2-b 0.0
PRK09319 555 PRK09319, PRK09319, bifunctional 3,4-dihydroxy-2-b 1e-160
cd00641193 cd00641, GTP_cyclohydro2, GTP cyclohydrolase II (R 1e-111
pfam00925169 pfam00925, GTP_cyclohydro2, GTP cyclohydrolase II 5e-96
COG0807193 COG0807, RibA, GTP cyclohydrolase II [Coenzyme met 1e-95
PRK09318387 PRK09318, PRK09318, bifunctional 3,4-dihydroxy-2-b 5e-94
PRK00393197 PRK00393, ribA, GTP cyclohydrolase II; Reviewed 2e-93
PRK14019367 PRK14019, PRK14019, bifunctional 3,4-dihydroxy-2-b 5e-93
TIGR00505191 TIGR00505, ribA, GTP cyclohydrolase II 8e-81
PRK09314339 PRK09314, PRK09314, bifunctional 3,4-dihydroxy-2-b 4e-64
PRK12485369 PRK12485, PRK12485, bifunctional 3,4-dihydroxy-2-b 2e-61
pfam00926193 pfam00926, DHBP_synthase, 3,4-dihydroxy-2-butanone 6e-58
COG0108203 COG0108, RibB, 3,4-dihydroxy-2-butanone 4-phosphat 2e-56
PRK08815375 PRK08815, PRK08815, GTP cyclohydrolase; Provisiona 1e-50
PRK03353217 PRK03353, ribB, 3,4-dihydroxy-2-butanone 4-phospha 1e-46
TIGR00506199 TIGR00506, ribB, 3,4-dihydroxy-2-butanone 4-phosph 8e-46
PRK01792214 PRK01792, ribB, 3,4-dihydroxy-2-butanone 4-phospha 8e-42
PRK00910218 PRK00910, ribB, 3,4-dihydroxy-2-butanone 4-phospha 1e-37
PRK00014230 PRK00014, ribB, 3,4-dihydroxy-2-butanone 4-phospha 6e-32
PRK05773219 PRK05773, PRK05773, 3,4-dihydroxy-2-butanone 4-pho 2e-10
PRK07198418 PRK07198, PRK07198, hypothetical protein; Validate 2e-05
>gnl|CDD|215445 PLN02831, PLN02831, Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase Back     alignment and domain information 
 Score =  664 bits (1714), Expect = 0.0
 Identities = 270/327 (82%), Positives = 293/327 (89%), Gaps = 1/327 (0%)

Query: 17  DAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVD 76
           DAK+GTTTGVSA+DRAKT+LALA  DSKPEDF RPGHIFPL+YREGGVLKRAGHTEA+VD
Sbjct: 124 DAKHGTTTGVSASDRAKTILALASPDSKPEDFRRPGHIFPLRYREGGVLKRAGHTEAAVD 183

Query: 77  LAVLAGLEPVAVLCEIVDD-DGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVEL 135
           LAVLAGL PV VLCEIV+D DGSMARLP+LR+FA+   LKIISIADLIRYRRKR++LVE 
Sbjct: 184 LAVLAGLPPVGVLCEIVNDEDGSMARLPQLRKFAEEHGLKIISIADLIRYRRKREKLVER 243

Query: 136 AAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARC 195
            A A +PT WG F A+CYRS LDGIEHIA VKG+IGDGQD+LVRVHSECLTGDIFGSARC
Sbjct: 244 TAVARLPTKWGLFTAYCYRSKLDGIEHIAFVKGDIGDGQDVLVRVHSECLTGDIFGSARC 303

Query: 196 DCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLP 255
           DCGNQLALAM+ IE AGRGVLVYLRGHEGRGIGLGHKLRAYNLQD+G DTVEANEELGLP
Sbjct: 304 DCGNQLALAMQLIEKAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDEGRDTVEANEELGLP 363

Query: 256 VDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAIAGRIPLLTPITMENKRYLE 315
           VDSREYGIGAQILRDLGVRTM+LMTNNP+KY GLKGYGLA+ GR+PLLTPIT ENKRYLE
Sbjct: 364 VDSREYGIGAQILRDLGVRTMRLMTNNPAKYTGLKGYGLAVVGRVPLLTPITKENKRYLE 423

Query: 316 TKRAKMGHVYGLNSGSHGDGSISDDGN 342
           TKR KMGHVYG + G H  G  S + N
Sbjct: 424 TKRTKMGHVYGSDLGGHVSGLESAETN 450

Length = 450
>gnl|CDD|181774 PRK09311, PRK09311, bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional Back     alignment and domain information
>gnl|CDD|236465 PRK09319, PRK09319, bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional Back     alignment and domain information
>gnl|CDD|238348 cd00641, GTP_cyclohydro2, GTP cyclohydrolase II (RibA) Back     alignment and domain information
>gnl|CDD|216196 pfam00925, GTP_cyclohydro2, GTP cyclohydrolase II Back     alignment and domain information
>gnl|CDD|223878 COG0807, RibA, GTP cyclohydrolase II [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|236464 PRK09318, PRK09318, bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional Back     alignment and domain information
>gnl|CDD|234745 PRK00393, ribA, GTP cyclohydrolase II; Reviewed Back     alignment and domain information
>gnl|CDD|237587 PRK14019, PRK14019, bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional Back     alignment and domain information
>gnl|CDD|129596 TIGR00505, ribA, GTP cyclohydrolase II Back     alignment and domain information
>gnl|CDD|181775 PRK09314, PRK09314, bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional Back     alignment and domain information
>gnl|CDD|171535 PRK12485, PRK12485, bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional Back     alignment and domain information
>gnl|CDD|216197 pfam00926, DHBP_synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase Back     alignment and domain information
>gnl|CDD|223186 COG0108, RibB, 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|236340 PRK08815, PRK08815, GTP cyclohydrolase; Provisional Back     alignment and domain information
>gnl|CDD|235119 PRK03353, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|232999 TIGR00506, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase Back     alignment and domain information
>gnl|CDD|167278 PRK01792, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|179162 PRK00910, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|134031 PRK00014, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|235601 PRK05773, PRK05773, 3,4-dihydroxy-2-butanone 4-phosphate synthase; Validated Back     alignment and domain information
>gnl|CDD|235959 PRK07198, PRK07198, hypothetical protein; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 355
PLN02831450 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy- 100.0
PRK09319 555 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate 100.0
PRK09311402 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate 100.0
PRK09318387 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate 100.0
PRK12485369 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate 100.0
PRK14019367 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate 100.0
PRK09314339 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate 100.0
PRK08815375 GTP cyclohydrolase; Provisional 100.0
COG0807193 RibA GTP cyclohydrolase II [Coenzyme metabolism] 100.0
PRK00393197 ribA GTP cyclohydrolase II; Reviewed 100.0
TIGR00505191 ribA GTP cyclohydrolase II. Several members of the 100.0
PF00925169 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: 100.0
cd00641193 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP 100.0
COG0108203 RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase 100.0
PRK00910218 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase 100.0
PRK01792214 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase 100.0
KOG1284357 consensus Bifunctional GTP cyclohydrolase II/3,4-d 100.0
PRK00014230 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase 100.0
PF00926194 DHBP_synthase: 3,4-dihydroxy-2-butanone 4-phosphat 100.0
TIGR00506199 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase 100.0
PRK03353217 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase 100.0
PRK07198418 hypothetical protein; Validated 100.0
PRK05773219 3,4-dihydroxy-2-butanone 4-phosphate synthase; Val 100.0
KOG1284357 consensus Bifunctional GTP cyclohydrolase II/3,4-d 99.65
PRK14481 331 dihydroxyacetone kinase subunit DhaK; Provisional 88.74
TIGR02361 574 dak_ATP dihydroxyacetone kinase, ATP-dependent. Th 88.08
PRK11468 356 dihydroxyacetone kinase subunit DhaK; Provisional 86.91
TIGR02363 329 dhaK1 dihydroxyacetone kinase, DhaK subunit. Two t 85.6
PF02733 325 Dak1: Dak1 domain; InterPro: IPR004006 Dihydroxyac 84.06
TIGR02362 326 dhaK1b probable dihydroxyacetone kinase DhaK1b sub 83.37
PRK14479 568 dihydroxyacetone kinase; Provisional 82.72
PRK14483 329 DhaKLM operon coactivator DhaQ; Provisional 82.41
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase Back     alignment and domain information 
Probab=100.00  E-value=5.5e-112  Score=856.44  Aligned_cols=334  Identities=81%  Similarity=1.257  Sum_probs=325.3

Q ss_pred             eecCCceEEEEecCCCCCCCChHHHHHHHHHHHcCCCCCCccccCcccceeeeecCCcccccchhHHHHHHHHHhCCCCc
Q 018477            7 FFLSTKLFGFDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPV   86 (355)
Q Consensus         7 ~~~~~ftvsvda~~g~~TGISa~dRa~Tir~la~~~~~~~df~~PGHv~Pl~a~~ggvl~R~GhtEaavdL~rlAgl~Pa   86 (355)
                      -+..+|||||||++|++|||||.|||+|||.||+++++|+||++|||||||++++||+++|+|||||||||||||||.|+
T Consensus       114 ~~~t~ftvsVd~~~g~~TGISa~dRa~Tir~lad~~~~~~df~~PGHvfPL~a~~ggvl~R~GhtEaavdLarlAgl~Pa  193 (450)
T PLN02831        114 KMATAFTVTVDAKHGTTTGVSASDRAKTILALASPDSKPEDFRRPGHIFPLRYREGGVLKRAGHTEAAVDLAVLAGLPPV  193 (450)
T ss_pred             ccCCCceEEEecCCCcccccchHHHHHHHHHHhCcCCChhhcCCCCcccceeecccCccCCCChHHHHHHHHHHcCCCce
Confidence            34578999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeCC-CCcccChhHHHHHHHhcCCeEEehhhHHHHHhhhhhhhhhcccccccCCcccEEEEEEEeCCCCceEEEE
Q 018477           87 AVLCEIVDD-DGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAM  165 (355)
Q Consensus        87 avi~ei~~~-dg~~a~~~~~~~fA~~h~L~ivti~dli~yr~~~E~lV~r~~~~~lpT~~G~F~~~~y~~~~~g~eH~AL  165 (355)
                      +|||||+++ ||+||+.+++.+||++|+||+++|+|||+||.++|++|+++++.++||.||+|++++|++..++.||+||
T Consensus       194 avi~Ei~~~~dG~m~~~~~~~~fA~~h~L~~v~i~dli~yr~~~e~lV~rv~~~~lpT~~G~F~~~~yr~~~~g~eHlAL  273 (450)
T PLN02831        194 GVLCEIVNDEDGSMARLPQLRKFAEEHGLKIISIADLIRYRRKREKLVERTAVARLPTKWGLFTAYCYRSKLDGIEHIAF  273 (450)
T ss_pred             EEEEEeccCCCCCccChHHHHHHHHHcCCcEEEHHHHHHHHhhccccccccceeeeecCCCCEEEEEEEeCCCCeEEEEE
Confidence            999999995 8999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EECcCCCCCcceEEeccCCccccccCCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCCCcchHHHhhhhhcccCCCCc
Q 018477          166 VKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDT  245 (355)
Q Consensus       166 v~Gdi~~~~~vlVRVHS~cltgDvfgs~~CdCg~qL~~Al~~Ia~~G~GVlvYLr~qEgrgiGl~~kl~ay~lq~~g~dt  245 (355)
                      ++|++.+++||||||||+|+|||+|+|.+|||+|||++||++|+++|+||||||++||||||||.+|+++|.+|++|+||
T Consensus       274 v~Gd~~~~~~vLVRVHSec~tgDvfgs~rCdCg~qL~~Al~~I~~~G~GVlvYLr~qegrgigl~~Kl~ay~lq~~g~dt  353 (450)
T PLN02831        274 VKGDIGDGQDVLVRVHSECLTGDIFGSARCDCGNQLALAMQLIEKAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDEGRDT  353 (450)
T ss_pred             EeCCcCCCCCceEEEeccCCHHHHhcCCCCCCcchHHHHHHHHHHcCCEEEEEEcCCCcccchHHHHHHHHhcccccCcc
Confidence            99999888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhcCCCCCccChhHHHHHHHHcCCCeeeeccCCcccccccccCCceEEEEeecCCCCCcchHHHHHHHHHhcCCCC
Q 018477          246 VEANEELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAIAGRIPLLTPITMENKRYLETKRAKMGHVY  325 (355)
Q Consensus       246 ~~An~~lg~~~D~RdygigAqILrdLGV~~irLLTNnP~K~~aL~g~GieV~ervpl~~~~~~~n~~yl~tK~~~~gH~l  325 (355)
                      ++||..+|++.|+|+||+|||||++|||++||||||||+|+.+|++|||+|++++|++++++++|++||+||++||||+|
T Consensus       354 ~eAn~~lg~~~D~RdygigAqIL~dLGI~~irLLTNNp~K~~~L~~~GieVve~vp~~~~~~~~n~~Yl~tK~~k~gH~l  433 (450)
T PLN02831        354 VEANEELGLPVDSREYGIGAQILRDLGVRTMRLMTNNPAKYTGLKGYGLAVVGRVPLLTPITKENKRYLETKRTKMGHVY  433 (450)
T ss_pred             hhhhhhccCcccceehHHHHHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEecccCCCChhhHHHHHHHHHHhCCcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCcCCC
Q 018477          326 GLNSGSHGDGSISDD  340 (355)
Q Consensus       326 ~~~~~~~~~~~~~~~  340 (355)
                      ..+++.+..+.-+..
T Consensus       434 ~~~~~~~~~~~~~~~  448 (450)
T PLN02831        434 GSDLGGHVSGLESAE  448 (450)
T ss_pred             CCCCCCccccccccC
Confidence            999988887766544

>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional Back     alignment and domain information
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional Back     alignment and domain information
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional Back     alignment and domain information
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional Back     alignment and domain information
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional Back     alignment and domain information
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional Back     alignment and domain information
>PRK08815 GTP cyclohydrolase; Provisional Back     alignment and domain information
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism] Back     alignment and domain information
>PRK00393 ribA GTP cyclohydrolase II; Reviewed Back     alignment and domain information
>TIGR00505 ribA GTP cyclohydrolase II Back     alignment and domain information
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin Back     alignment and domain information
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA) Back     alignment and domain information
>COG0108 RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism] Back     alignment and domain information
>PRK00910 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional Back     alignment and domain information
>PRK01792 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional Back     alignment and domain information
>KOG1284 consensus Bifunctional GTP cyclohydrolase II/3,4-dihydroxy-2butanone-4-phosphate synthase [Coenzyme transport and metabolism] Back     alignment and domain information
>PRK00014 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional Back     alignment and domain information
>PF00926 DHBP_synthase: 3,4-dihydroxy-2-butanone 4-phosphate synthase; InterPro: IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase (4 Back     alignment and domain information
>TIGR00506 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase Back     alignment and domain information
>PRK03353 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional Back     alignment and domain information
>PRK07198 hypothetical protein; Validated Back     alignment and domain information
>PRK05773 3,4-dihydroxy-2-butanone 4-phosphate synthase; Validated Back     alignment and domain information
>KOG1284 consensus Bifunctional GTP cyclohydrolase II/3,4-dihydroxy-2butanone-4-phosphate synthase [Coenzyme transport and metabolism] Back     alignment and domain information
>PRK14481 dihydroxyacetone kinase subunit DhaK; Provisional Back     alignment and domain information
>TIGR02361 dak_ATP dihydroxyacetone kinase, ATP-dependent Back     alignment and domain information
>PRK11468 dihydroxyacetone kinase subunit DhaK; Provisional Back     alignment and domain information
>TIGR02363 dhaK1 dihydroxyacetone kinase, DhaK subunit Back     alignment and domain information
>PF02733 Dak1: Dak1 domain; InterPro: IPR004006 Dihydroxyacetone kinase (glycerone kinase) 2 Back     alignment and domain information
>TIGR02362 dhaK1b probable dihydroxyacetone kinase DhaK1b subunit Back     alignment and domain information
>PRK14479 dihydroxyacetone kinase; Provisional Back     alignment and domain information
>PRK14483 DhaKLM operon coactivator DhaQ; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query355
2bz0_A196 Crystal Structure Of E. Coli Gtp Cyclohydrolase Ii 5e-45
2bz1_A196 Crystal Structure Of Apo E. Coli Gtp Cyclohydrolase 5e-44
1g57_A217 Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Pho 7e-32
1iez_A217 Solution Structure Of 3,4-Dihydroxy-2-Butanone 4-Ph 8e-32
3lqu_A217 Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Pho 4e-31
3h07_A220 Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Pho 2e-29
3mk5_A212 Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Pho 4e-29
3mgz_A206 Crystal Structure Of Dhbps Domain Of Bi-Functional 4e-29
1tks_A204 Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Pho 1e-25
1k49_A233 Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Pho 2e-19
1pvw_A227 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From 7e-14
1pvy_A227 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From 8e-13
>pdb|2BZ0|A Chain A, Crystal Structure Of E. Coli Gtp Cyclohydrolase Ii In Complex With Gtp Analogue, Gmpcpp, And Zinc Length = 196 Back     alignment and structure 
Iteration: 1

 Score =  177 bits (450), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 91/188 (48%), Positives = 119/188 (63%), Gaps = 1/188 (0%)
Query: 137 AAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCD 196
           A A +PT WG F    +  L  G +H+A+V G+I     +L RVHSECLTGD   S RCD
Sbjct: 7   AEAKLPTPWGDFLMVGFEELATGHDHVALVYGDISGHTPVLARVHSECLTGDALFSLRCD 66
Query: 197 CGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPV 256
           CG QL  A+ QI   GRG+L+Y R  EGR IGL +K+RAY LQD G+DTVEAN +LG   
Sbjct: 67  CGFQLEAALTQIAEEGRGILLYHR-QEGRNIGLLNKIRAYALQDQGYDTVEANHQLGFAA 125
Query: 257 DSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAIAGRIPLLTPITMENKRYLET 316
           D R++ + A + + LGV  ++L+TNNP K   L   G+ I  R+PL+      N+ YL+T
Sbjct: 126 DERDFTLCADMFKLLGVNEVRLLTNNPKKVEILTEAGINIVERVPLIVGRNPNNEHYLDT 185
Query: 317 KRAKMGHV 324
           K  KMGH+
Sbjct: 186 KAEKMGHL 193
>pdb|2BZ1|A Chain A, Crystal Structure Of Apo E. Coli Gtp Cyclohydrolase Ii Length = 196 Back     alignment and structure
>pdb|1G57|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase Length = 217 Back     alignment and structure
>pdb|1IEZ|A Chain A, Solution Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase Of Riboflavin Biosynthesis Length = 217 Back     alignment and structure
>pdb|3LQU|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase Complexed With Ribulose-5 Phosphate Length = 217 Back     alignment and structure
>pdb|3H07|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From Yersinia Pestis Co92 Length = 220 Back     alignment and structure
>pdb|3MK5|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase Domain From Mycobacterium Tuberculosis With Sulfate And Zinc At Ph 4.00 Length = 212 Back     alignment and structure
>pdb|3MGZ|A Chain A, Crystal Structure Of Dhbps Domain Of Bi-Functional DhbpsGTP Cyclohydrolase Ii From Mycobacterium Tuberculosis At Ph 4.0 Length = 206 Back     alignment and structure
>pdb|1TKS|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase Of Candida Albicans Length = 204 Back     alignment and structure
>pdb|1K49|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase (Cation Free Form) Length = 233 Back     alignment and structure
>pdb|1PVW|A Chain A, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M. Jannaschii Length = 227 Back     alignment and structure
>pdb|1PVY|A Chain A, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M. Jannaschii In Complex With Ribulose 5-Phosphate Length = 227 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query355
2bz1_A196 GTP cyclohydrolase II; riboflavin biosynthesis, ca 1e-127
1g57_A217 DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphat 1e-72
3mio_A206 DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphat 9e-70
1tks_A204 3,4-dihydroxy-2-butanone 4-phosphate synthase; rib 1e-69
1k4i_A233 3,4-dihydroxy-2-butanone 4-phosphate synthase; rib 2e-69
1snn_A227 DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphat 2e-65
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-11
>2bz1_A GTP cyclohydrolase II; riboflavin biosynthesis, catalytic zinc, magnesium; 1.54A {Escherichia coli} SCOP: c.144.1.1 PDB: 2bz0_A Length = 196 Back     alignment and structure
 Score =  361 bits (929), Expect = e-127
 Identities = 91/191 (47%), Positives = 120/191 (62%), Gaps = 1/191 (0%)

Query: 133 VELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGS 192
           ++  A A +PT WG F    +  L  G +H+A+V G+I     +L RVHSECLTGD   S
Sbjct: 3   LKRVAEAKLPTPWGDFLMVGFEELATGHDHVALVYGDISGHTPVLARVHSECLTGDALFS 62

Query: 193 ARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEEL 252
            RCDCG QL  A+ QI   GRG+L+Y R  EGR IGL +K+RAY LQD G+DTVEAN +L
Sbjct: 63  LRCDCGFQLEAALTQIAEEGRGILLYHR-QEGRNIGLLNKIRAYALQDQGYDTVEANHQL 121

Query: 253 GLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAIAGRIPLLTPITMENKR 312
           G   D R++ + A + + LGV  ++L+TNNP K   L   G+ I  R+PL+      N+ 
Sbjct: 122 GFAADERDFTLCADMFKLLGVNEVRLLTNNPKKVEILTEAGINIVERVPLIVGRNPNNEH 181

Query: 313 YLETKRAKMGH 323
           YL+TK  KMGH
Sbjct: 182 YLDTKAEKMGH 192
>1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavine biosynthesis, skeletal rearrangement, antimicrobial target; 1.40A {Escherichia coli} SCOP: d.115.1.2 PDB: 1g58_A 1iez_A 3ls6_A 3lrj_A 3lqu_A 3h07_A Length = 217 Back     alignment and structure
>3mio_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin, ribulose-5-phosphate, FAD, FMN; 1.80A {Mycobacterium tuberculosis} PDB: 3mgz_A 3mk5_A Length = 206 Back     alignment and structure
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A* Length = 204 Back     alignment and structure
>1k4i_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesi antimicrobial target, structure-based design, isomerase; 0.98A {Magnaporthe grisea} SCOP: d.115.1.2 PDB: 1k49_A 1k4l_A 1k4o_A 1k4p_A Length = 233 Back     alignment and structure
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB: 1pvy_A* 1pvw_A Length = 227 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query355
2bz1_A196 GTP cyclohydrolase II; riboflavin biosynthesis, ca 100.0
1k4i_A233 3,4-dihydroxy-2-butanone 4-phosphate synthase; rib 100.0
3mio_A206 DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphat 100.0
1tks_A204 3,4-dihydroxy-2-butanone 4-phosphate synthase; rib 100.0
1snn_A227 DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphat 100.0
1g57_A217 DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphat 100.0
>2bz1_A GTP cyclohydrolase II; riboflavin biosynthesis, catalytic zinc, magnesium; 1.54A {Escherichia coli} SCOP: c.144.1.1 PDB: 2bz0_A Back     alignment and structure
Probab=100.00  E-value=2.1e-74  Score=527.34  Aligned_cols=193  Identities=47%  Similarity=0.802  Sum_probs=169.0

Q ss_pred             hhhcccccccCCcccEEEEEEEeCCCCceEEEEEECcCCCCCcceEEeccCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 018477          133 VELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAG  212 (355)
Q Consensus       133 V~r~~~~~lpT~~G~F~~~~y~~~~~g~eH~ALv~Gdi~~~~~vlVRVHS~cltgDvfgs~~CdCg~qL~~Al~~Ia~~G  212 (355)
                      |++++++++||.||+|++++|++..++.||+|||+|++.+++||||||||+|+|||+|||.+|||+|||++||++|+++|
T Consensus         3 V~~v~~~~lpT~~G~f~~~~y~~~~~~~eH~ALv~G~i~~~~~vLVRvHsec~tgDvfgs~rcdcg~qL~~Al~~I~~~G   82 (196)
T 2bz1_A            3 LKRVAEAKLPTPWGDFLMVGFEELATGHDHVALVYGDISGHTPVLARVHSECLTGDALFSLRCDCGFQLEAALTQIAEEG   82 (196)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEETTTCCEEEEEEESCCCSSSCEEEEEEECCHHHHTSCCSSCSHHHHHHHHHHHHHHHT
T ss_pred             eEEEEEEEecCCCeeEEEEEEEECCCCcEEEEEEeCCCCCCCccEEEEeccCChHHHhCCCCCCChHHHHHHHHHHHHhC
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEEeCCCCCCcchHHHhhhhhcccCCCCchhhhhhcCCCCCccChhHHHHHHHHcCCCeeeeccCCcccccccccC
Q 018477          213 RGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGY  292 (355)
Q Consensus       213 ~GVlvYLr~qEgrgiGl~~kl~ay~lq~~g~dt~~An~~lg~~~D~RdygigAqILrdLGV~~irLLTNnP~K~~aL~g~  292 (355)
                      +||||||| ||||||||.+|+++|.||++|.||++||.++||+.|+|+||+|||||++|||++||||||||+|+.+|++|
T Consensus        83 ~GVlvyLr-qegrgigL~~kl~ay~lqd~g~dt~~an~~lg~~~d~R~ygigAqIL~dLGV~~irLLTnnp~K~~~L~g~  161 (196)
T 2bz1_A           83 RGILLYHR-QEGRNIGLLNKIRAYALQDQGYDTVEANHQLGFAADERDFTLCADMFKLLGVNEVRLLTNNPKKVEILTEA  161 (196)
T ss_dssp             SEEEEEEC-CHHHHTCHHHHHHHHHHHHTTCCHHHHHHHTTCCSCCCCTHHHHHHHHHTTCCSEEEECSCHHHHHHHHHT
T ss_pred             CEEEEEEC-CCCcchhHHHHHHHHhhhccCCcccccccccCCCCccccHHHHHHHHHHcCCCcEEccCCCCccccccccC
Confidence            99999998 99999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEEeecCCCCCcchHHHHHHHHHhcCCCCC
Q 018477          293 GLAIAGRIPLLTPITMENKRYLETKRAKMGHVYG  326 (355)
Q Consensus       293 GieV~ervpl~~~~~~~n~~yl~tK~~~~gH~l~  326 (355)
                      ||+|++++|++.++|++|++||+||++||||+|+
T Consensus       162 GleVve~v~~~~~~~~~n~~yl~tk~~~~gh~l~  195 (196)
T 2bz1_A          162 GINIVERVPLIVGRNPNNEHYLDTKAEKMGHLLN  195 (196)
T ss_dssp             TCCEEEEECCCC----------------------
T ss_pred             CeEEEEEEccCCCCCccchhHHHhhHHhhCCCCC
Confidence            9999999999999999999999999999999984
>1k4i_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesi antimicrobial target, structure-based design, isomerase; 0.98A {Magnaporthe grisea} SCOP: d.115.1.2 PDB: 1k49_A 1k4l_A 1k4o_A 1k4p_A Back     alignment and structure
>3mio_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin, ribulose-5-phosphate, FAD, FMN; 1.80A {Mycobacterium tuberculosis} SCOP: d.115.1.0 PDB: 3mgz_A 3mk5_A Back     alignment and structure
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A* Back     alignment and structure
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB: 1pvy_A* 1pvw_A Back     alignment and structure
>1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavine biosynthesis, skeletal rearrangement, antimicrobial target; 1.40A {Escherichia coli} SCOP: d.115.1.2 PDB: 1g58_A 1iez_A 3ls6_A 3lrj_A 3lqu_A 3h07_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 355
d2bz1a1174 c.144.1.1 (A:1-174) GTP cyclohydrolase II, RibA {E 1e-58
d1g57a_209 d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphat 1e-36
d1tksa_202 d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphat 2e-36
d1snna_219 d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphat 2e-36
d1k4ia_216 d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphat 5e-35
>d2bz1a1 c.144.1.1 (A:1-174) GTP cyclohydrolase II, RibA {Escherichia coli [TaxId: 562]} Length = 174 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: RibA-like
superfamily: RibA-like
family: RibA-like
domain: GTP cyclohydrolase II, RibA
species: Escherichia coli [TaxId: 562]

 Score =  185 bits (470), Expect = 1e-58
 Identities = 82/171 (47%), Positives = 109/171 (63%), Gaps = 1/171 (0%)

Query: 133 VELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGS 192
           ++  A A +PT WG F    +  L  G +H+A+V G+I     +L RVHSECLTGD   S
Sbjct: 3   LKRVAEAKLPTPWGDFLMVGFEELATGHDHVALVYGDISGHTPVLARVHSECLTGDALFS 62

Query: 193 ARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEEL 252
            RCDCG QL  A+ QI   GRG+L+Y R  EGR IGL +K+RAY LQD G+DTVEAN +L
Sbjct: 63  LRCDCGFQLEAALTQIAEEGRGILLYHR-QEGRNIGLLNKIRAYALQDQGYDTVEANHQL 121

Query: 253 GLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAIAGRIPLL 303
           G   D R++ + A + + LGV  ++L+TNNP K   L   G+ I  R+PL+
Sbjct: 122 GFAADERDFTLCADMFKLLGVNEVRLLTNNPKKVEILTEAGINIVERVPLI 172
>d1g57a_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Escherichia coli [TaxId: 562]} Length = 209 Back     information, alignment and structure
>d1tksa_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Candida albicans [TaxId: 5476]} Length = 202 Back     information, alignment and structure
>d1snna_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} Length = 219 Back     information, alignment and structure
>d1k4ia_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Magnaporthe grisea [TaxId: 148305]} Length = 216 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query355
d2bz1a1174 GTP cyclohydrolase II, RibA {Escherichia coli [Tax 100.0
d1g57a_209 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHB 100.0
d1tksa_202 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHB 100.0
d1k4ia_216 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHB 100.0
d1snna_219 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHB 100.0
d1oi2a_ 347 Dihydroxyacetone kinase subunit K, DhaK {Escherich 81.44
>d2bz1a1 c.144.1.1 (A:1-174) GTP cyclohydrolase II, RibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: RibA-like
superfamily: RibA-like
family: RibA-like
domain: GTP cyclohydrolase II, RibA
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=9.4e-58  Score=408.17  Aligned_cols=172  Identities=48%  Similarity=0.814  Sum_probs=168.5

Q ss_pred             hhhhcccccccCCcccEEEEEEEeCCCCceEEEEEECcCCCCCcceEEeccCCccccccCCCCCCChHHHHHHHHHHHHc
Q 018477          132 LVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAA  211 (355)
Q Consensus       132 lV~r~~~~~lpT~~G~F~~~~y~~~~~g~eH~ALv~Gdi~~~~~vlVRVHS~cltgDvfgs~~CdCg~qL~~Al~~Ia~~  211 (355)
                      .|+|++++++||.||+|++++|++..++.+|+|||+|++.+++||||||||+|+++|+|++.+|+|+|||++||++|+++
T Consensus         2 ~I~rv~e~~l~T~~G~F~l~~y~~~~~~~~HlALvkG~i~~~~~vlVRVHs~~~~~Dv~~~~~~~~~~~L~~al~~I~~~   81 (174)
T d2bz1a1           2 QLKRVAEAKLPTPWGDFLMVGFEELATGHDHVALVYGDISGHTPVLARVHSECLTGDALFSLRCDCGFQLEAALTQIAEE   81 (174)
T ss_dssp             CEEEEEEEEEEETTEEEEEEEEEETTTCCEEEEEEESCCCSSSCEEEEEEECCHHHHTSCCSSCSHHHHHHHHHHHHHHH
T ss_pred             eEEEEEEEeccCCCceEEEEEEEeCCCCeEEEEEEEcCcccccceeEEeeecccccceecccccccchhHHHHHHHHHHc
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEEeCCCCCCcchHHHhhhhhcccCCCCchhhhhhcCCCCCccChhHHHHHHHHcCCCeeeeccCCccccccccc
Q 018477          212 GRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKG  291 (355)
Q Consensus       212 G~GVlvYLr~qEgrgiGl~~kl~ay~lq~~g~dt~~An~~lg~~~D~RdygigAqILrdLGV~~irLLTNnP~K~~aL~g  291 (355)
                      |+||||||+ ||+||+|+.+|+++|.+|+++.|+.+++..++.+.|.|+||+|||||+||||++||||||||.|+.+|+|
T Consensus        82 g~Gviv~l~-~~~~~~~~~~ki~~~~~~~~~~~~~~~~~~~~~~~d~R~yGiGAQIL~dLGv~km~LLsnsp~k~~~L~g  160 (174)
T d2bz1a1          82 GRGILLYHR-QEGRNIGLLNKIRAYALQDQGYDTVEANHQLGFAADERDFTLCADMFKLLGVNEVRLLTNNPKKVEILTE  160 (174)
T ss_dssp             TSEEEEEEC-CHHHHTCHHHHHHHHHHHHTTCCHHHHHHHTTCCSCCCCTHHHHHHHHHTTCCSEEEECSCHHHHHHHHH
T ss_pred             CCcEEEEec-CCCcchhHHHHHHHhhhhhccccccccccccCCCcchhhhhHHHHHHHHcCCCeEEEccCChhhHHHHhh
Confidence            999999998 9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceEEEEeecCC
Q 018477          292 YGLAIAGRIPLLT  304 (355)
Q Consensus       292 ~GieV~ervpl~~  304 (355)
                      |||||+++||+.+
T Consensus       161 fgLeIv~~vpl~~  173 (174)
T d2bz1a1         161 AGINIVERVPLIV  173 (174)
T ss_dssp             TTCCEEEEECCCC
T ss_pred             CCCEEEEEEeecc
Confidence            9999999999875
>d1g57a_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1tksa_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Candida albicans [TaxId: 5476]} Back     information, alignment and structure
>d1k4ia_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Magnaporthe grisea [TaxId: 148305]} Back     information, alignment and structure
>d1snna_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1oi2a_ c.119.1.2 (A:) Dihydroxyacetone kinase subunit K, DhaK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure