Citrus Sinensis ID: 018478

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-----
Protein Sequence
MCDTNSSLEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEEDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPEKGLPSSLLELWIGGCPLIEEKCRKDGGQYFYSLFYYL
Secondary Structure (PSIPRED)
cccccccccEEEEEccccccccccccccccccEEEEEcccccEEccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccEEEEccccccccccccccccccccEEEcccccccEEccccccccccccEEEEEEccccccccccccccccccEEEEcccccccccccccccccEEccccccHHHHHHccccccccccccEEEEccccccccccccccccccccccccccccEEEcccccccccHHccccccccccEEEccccccccccccccccccccEEEccccHHHHcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEccccccccccccccccccccEEEccccccHHcccHHHcccccccccccccccHHccEEEccccHHHHHccHcccccccccccccccccccccEEEEcccccHHcccHHccccccccEEEccccccHccccccccccccccEEEccccccHccccccccccccccEEEEccccHHHccccHccccccccEEEEcccccccccccccHHHccHHHHHHHHHHHHHccccccccccccEEEEcccccHcccccHHccccccHccccccccEEEEcccccHHccccHccccccccEEEEcccccHccccccccccHHcEEEccccHHHHHcccccccccccHHHccc
Coil and Loop (DISEMBL)
mcdtnssleiLEIWSCRSLTYLAAVQlprslkrldiQCCSNIRTltmeegiqsssssssrrYTSYLLEELCISSCRSLTSIFSKNELSATLeslevgnlppslkslRVQGCSKLESIAEtldnstsleTIHIFYCEnmkilpsgLHNLRQLQEisiegcgnlesfpegglpcaklKEVVIRWCGRLEALPKGLHNLKSLQKltigkggleedglptnlhsldiRGNMEIWKSMIEWGQGFHRFSSLRELRIegcdddmvsfppedirmgttlplptsltslaifsfpnlerlsssivdlqnltslylvgcpklkyfpekglpssLLELWIggcplieekcrkdggqyFYSLFYYL
Flexible Loop (DISEMBL)
mcdtnssleiLEIWSCRSLTYLAAVQlprslkrlDIQCCSNIRTltmeegiqsssssssRRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAetldnstsLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEAlpkglhnlkSLQKLTIGkggleedglptnLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPEKGLPSSLLELWIGGCPLIEEKCRKDGGQYFYSLFYYL
Low Complexity Region (SEG)
MCDTNSSLEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQsssssssRRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEEDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGttlplptsltslAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPEKGLPSSLLELWIGGCPLIEEKCRKDGGQYFYSLFYYL
Disordered region (IsUnstruct)
*******LEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTM**************YTSYLLEELCISSCRSLTSIFSKNELSATLESLEV*********LRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEEDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPEKGLPSSLLELWIGGCPLIEEKCRKDGGQYFYSLFYY*
Disordered Region (DISOPRED)
MCDTNSSLEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGI*********RYTSYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEEDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPEKGLPSSLLELWIGGCPLIEEKCRKDGGQYFYSLFYYL
Disordered Region (DISEMBL)
MCDTNSSLEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTME*************YTSYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEEDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPEKGLPSSLLELWIGGCPLIEEKCRKDGGQYFYSLFYYL
Disordered Region (DISPRO)
*C*TNSSLEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEEDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPEKGLPSSLLELWIGGCPLIEEKCRKDGGQYFYSLFYYL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MCDTNSSLEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEEDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPEKGLPSSLLELWIGGCPLIEEKCRKDGGQYFYSLFYYL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	355	2.2.26 [Sep-21-2011]
Q9LRR5	1424	Putative disease resistan	yes	no	0.859	0.214	0.295	2e-21
Q7XA39	988	Putative disease resistan	N/A	no	0.459	0.164	0.318	2e-10
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.594	0.162	0.268	3e-08
Q9LZ25	811	Probable disease resistan	no	no	0.369	0.161	0.305	3e-08
Q7XBQ9	970	Disease resistance protei	N/A	no	0.430	0.157	0.313	4e-08
Q9LVT1	623	Putative disease resistan	no	no	0.273	0.155	0.285	2e-07
Q9FKZ1	809	Probable disease resistan	no	no	0.450	0.197	0.265	2e-06
Q7XA40	992	Putative disease resistan	N/A	no	0.484	0.173	0.290	4e-06
Q9FW44	787	Disease resistance protei	no	no	0.383	0.172	0.314	5e-06
P26337	630	Putative adenylate cyclas	N/A	no	0.769	0.433	0.265	5e-06

>sp|Q9LRR5|DRL21_ARATH Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1

 Score =  103 bits (256), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 114/386 (29%), Positives = 175/386 (45%), Gaps = 81/386 (20%)

Query: 3    DTNSSLEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRY 62
            D  + +E L++     L     ++LP++L+ L I  C         +G+ S   + +  Y
Sbjct: 1070 DDETDMEYLKVTDISHL-----MELPQNLQSLHIDSC---------DGLTSLPENLTESY 1115

Query: 63   TSYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQGCSKL---ESIAE 119
             +  L EL I +C SL             ES    + P +LK+L ++ C KL   ES+  
Sbjct: 1116 PN--LHELLIIACHSL-------------ESFPGSHPPTTLKTLYIRDCKKLNFTESLQP 1160

Query: 120  TLDNST----------------------SLETIHIFYCENMKI--LPSGLHNLR-QLQEI 154
            T   S                        L ++ I  CE+ K   + +GL + R  L+ +
Sbjct: 1161 TRSYSQLEYLFIGSSCSNLVNFPLSLFPKLRSLSIRDCESFKTFSIHAGLGDDRIALESL 1220

Query: 155  SIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGK-------- 206
             I  C NLE+FP+GGLP  KL  +++  C +L+ALP+ L  L SL  L I K        
Sbjct: 1221 EIRDCPNLETFPQGGLPTPKLSSMLLSNCKKLQALPEKLFGLTSLLSLFIIKCPEIETIP 1280

Query: 207  GGLEEDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDI 266
            GG    G P+NL +L I    +     IEW  G     +LR L I+G ++D+ SFP E +
Sbjct: 1281 GG----GFPSNLRTLCI-SLCDKLTPRIEW--GLRDLENLRNLEIDGGNEDIESFPEEGL 1333

Query: 267  RMGTTLPLPTSLTSLAIFSFPNLERLS-SSIVDLQNLTSLYLVGCPKLKYFPEKGLPSSL 325
                   LP S+ SL I  F NL+ L+     D + + ++ + GC KL+   ++ LP  L
Sbjct: 1334 -------LPKSVFSLRISRFENLKTLNRKGFHDTKAIETMEISGCDKLQISIDEDLP-PL 1385

Query: 326  LELWIGGCPLIEEKCRKDGGQYFYSL 351
              L I  C L+ E   +   ++F  L
Sbjct: 1386 SCLRISSCSLLTETFAEVETEFFKVL 1411

Potential disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1

 Score = 67.4 bits (163), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/185 (31%), Positives = 96/185 (51%), Gaps = 22/185 (11%)

Query: 30  SLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCR-----SLTSIFSK 84
           SLK+L I    +++ L  EEG +             +LEE+ I  C      +L+S+  K
Sbjct: 786 SLKKLRIWFFRSLKGLMKEEGEEKFP----------MLEEMAILYCPLFVFPTLSSV-KK 834

Query: 85  NELSATLESL---EVGNLPPSLKSLRVQGCSKLESIAETLDNS-TSLETIHIFYCENMKI 140
            E+     +     + NL  +L SLR+    +  S+ E +  S T+LE +  F  +N+K 
Sbjct: 835 LEVHGNTNTRGLSSISNLS-TLTSLRIGANYRATSLPEEMFTSLTNLEFLSFFDFKNLKD 893

Query: 141 LPSGLHNLRQLQEISIEGCGNLESFPEGGLP-CAKLKEVVIRWCGRLEALPKGLHNLKSL 199
           LP+ L +L  L+ + IE C +LESFPE GL     L ++ +++C  L+ LP+GL +L +L
Sbjct: 894 LPTSLTSLNALKRLQIESCDSLESFPEQGLEGLTSLTQLFVKYCKMLKCLPEGLQHLTAL 953

Query: 200 QKLTI 204
             L +
Sbjct: 954 TNLGV 958

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score = 59.7 bits (143), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 110/246 (44%), Gaps = 35/246 (14%)

Query: 98  NLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIE 157
           +L  +L+ L + GC  L ++  ++ N+T L  + +  C+ ++  P+ L NL  L+ +++ 
Sbjct: 633 SLAINLEELDLVGCKSLVTLPSSIQNATKLIYLDMSDCKKLESFPTDL-NLESLEYLNLT 691

Query: 158 GCGNLESFPEGGLPCAKL------KEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEE 211
           GC NL +FP   + C+ +       E+V+  C   + LP GL  L  L +       +  
Sbjct: 692 GCPNLRNFPAIKMGCSDVDFPEGRNEIVVEDCFWNKNLPAGLDYLDCLTRC------MPC 745

Query: 212 DGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCD----DDMVSFPPEDIR 267
           +  P  L  L++RG    +K    W +G     SL     EG D    +++   P     
Sbjct: 746 EFRPEQLAFLNVRG----YKHEKLW-EGIQSLGSL-----EGMDLSESENLTEIP----- 790

Query: 268 MGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPEKGLPSSLLE 327
               L   T L SL + +  +L  L S+I +L  L  L +  C  L+  P     SSL  
Sbjct: 791 ---DLSKATKLESLILNNCKSLVTLPSTIGNLHRLVRLEMKECTGLEVLPTDVNLSSLET 847

Query: 328 LWIGGC 333
           L + GC
Sbjct: 848 LDLSGC 853

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZ25|DRL30_ARATH Probable disease resistance protein At5g04720 OS=Arabidopsis thaliana GN=At5g04720 PE=2 SV=1

 Score = 59.7 bits (143), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 62/131 (47%)

Query: 72  ISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIH 131
           + +   L+ IF K   S     L++  + P L  L +  C  L  +  T+   TSL +I 
Sbjct: 622 LQNLHKLSLIFCKINTSLDQTELDIAQIFPKLSDLTIDHCDDLLELPSTICGITSLNSIS 681

Query: 132 IFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEALPK 191
           I  C  +K LP  L  L+ LQ + +  C  L S P       +LK V I  C  L +LP+
Sbjct: 682 ITNCPRIKELPKNLSKLKALQLLRLYACHELNSLPVEICELPRLKYVDISQCVSLSSLPE 741

Query: 192 GLHNLKSLQKL 202
            +  +K+L+K+
Sbjct: 742 KIGKVKTLEKI 752

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1

 Score = 59.3 bits (142), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 88/182 (48%), Gaps = 29/182 (15%)

Query: 25  VQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSK 84
           ++ P SL++LDI    +++ L  +EG +             +LEE+ I  C  LT     
Sbjct: 785 IRFP-SLRKLDIWDFGSLKGLLKKEGEEQFP----------VLEEMIIHECPFLT----- 828

Query: 85  NELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETL-DNSTSLETIHIFYCENMKILPS 143
             LS+ L +L          SLR+       S  E +  N  +L+ + I  C N+K LP+
Sbjct: 829 --LSSNLRAL---------TSLRICYNKVATSFPEEMFKNLANLKYLTISRCNNLKELPT 877

Query: 144 GLHNLRQLQEISIEGCGNLESFPEGGLP-CAKLKEVVIRWCGRLEALPKGLHNLKSLQKL 202
            L +L  L+ + I+ C  LES PE GL   + L E+ +  C  L+ LP+GL +L +L  L
Sbjct: 878 SLASLNALKSLKIQLCCALESLPEEGLEGLSSLTELFVEHCNMLKCLPEGLQHLTTLTSL 937

Query: 203 TI 204
            I
Sbjct: 938 KI 939

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Confers a broad resistance to all known races of P.infestans.

Solanum bulbocastanum (taxid: 147425)

>sp|Q9LVT1|DRL39_ARATH Putative disease resistance protein At5g47280 OS=Arabidopsis thaliana GN=At5g47280 PE=3 SV=1

 Score = 57.0 bits (136), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 58/112 (51%)

Query: 93  SLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQ 152
           ++++  + P L  + +  C  L  +  T+   TSL +I I  C N+K LP  +  L+ LQ
Sbjct: 455 AIDIAQIFPKLTDITIDYCDDLAELPSTICGITSLNSISITNCPNIKELPKNISKLQALQ 514

Query: 153 EISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTI 204
            + +  C  L+S P       +L  V I  C  L +LP+ + N+++L+K+ +
Sbjct: 515 LLRLYACPELKSLPVEICELPRLVYVDISHCLSLSSLPEKIGNVRTLEKIDM 566

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKZ1|DRL42_ARATH Probable disease resistance protein At5g66900 OS=Arabidopsis thaliana GN=At5g66900 PE=3 SV=1

 Score = 53.5 bits (127), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 80/162 (49%), Gaps = 2/162 (1%)

Query: 69  ELCISSCRSLTSIF-SKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSL 127
           +L +SS + L+ +  S  E+    E + V N    L+ + +  C  L+ +   +    SL
Sbjct: 616 QLQLSSLKKLSLVMCSFGEVFYDTEDIVVSNALSKLQEIDIDYCYDLDELPYWISEIVSL 675

Query: 128 ETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLE 187
           +T+ I  C  +  LP  + NL +L+ + +    NL   PE     + L+ + I  C  L 
Sbjct: 676 KTLSITNCNKLSQLPEAIGNLSRLEVLRLCSSMNLSELPEATEGLSNLRFLDISHCLGLR 735

Query: 188 ALPKGLHNLKSLQKLTIGK-GGLEEDGLPTNLHSLDIRGNME 228
            LP+ +  L++L+K+++ K  G E     TNL +L+++ + E
Sbjct: 736 KLPQEIGKLQNLKKISMRKCSGCELPESVTNLENLEVKCDEE 777

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2

 Score = 52.8 bits (125), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 93/193 (48%), Gaps = 21/193 (10%)

Query: 21  YLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLT- 79
           +L   + P SL++L I    N++ L   +G +             +LEE+ IS C     
Sbjct: 781 FLTRRRFP-SLRKLHIGGFCNLKGLQRMKGAEQFP----------VLEEMKISDCPMFVF 829

Query: 80  -SIFSKNELSATLESLEVGNLPP-----SLKSLRVQGCSKLESIAETL-DNSTSLETIHI 132
            ++ S  +L    E+ + G L       +L SL++     + S+ E +  N  +L  + +
Sbjct: 830 PTLSSVKKLEIWGEA-DAGGLSSISNLSTLTSLKIFSNHTVTSLLEEMFKNLENLIYLSV 888

Query: 133 FYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLP-CAKLKEVVIRWCGRLEALPK 191
            + EN+K LP+ L +L  L+ + I  C  LES PE GL   + L E+ +  C  L+ LP+
Sbjct: 889 SFLENLKELPTSLASLNNLKCLDIRYCYALESLPEEGLEGLSSLTELFVEHCNMLKCLPE 948

Query: 192 GLHNLKSLQKLTI 204
           GL +L +L  L I
Sbjct: 949 GLQHLTTLTSLKI 961

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q9FW44|ADR1_ARATH Disease resistance protein ADR1 OS=Arabidopsis thaliana GN=ADR1 PE=2 SV=2

 Score = 52.4 bits (124), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 72/143 (50%), Gaps = 7/143 (4%)

Query: 81  IFSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKI 140
           IF K + S    S ++  + PSL  L +  C  L  + +++   TSL ++ I  C  +  
Sbjct: 608 IFCKVKNSFVQTSFDISKIFPSLSDLTIDHCDDLLEL-KSIFGITSLNSLSITNCPRILE 666

Query: 141 LPSGLHNLRQLQEISIEGCGNLESFPEG--GLPCAKLKEVVIRWCGRLEALPKGLHNLKS 198
           LP  L N++ L+ + +  C  L S P     LPC  LK V I  C  L +LP+    L S
Sbjct: 667 LPKNLSNVQSLERLRLYACPELISLPVEVCELPC--LKYVDISQCVSLVSLPEKFGKLGS 724

Query: 199 LQKLTIGKGGLEEDGLPTNLHSL 221
           L+K+ + +  L   GLP+++ +L
Sbjct: 725 LEKIDMRECSLL--GLPSSVAAL 745

Disease resistance (R) protein that mediates resistance against Hyaloperonospora parasitica in a salicylic acid-dependent manner. Also mediates resistance against Erysiphe cichoracearum is both salicylic acid-dependent and partially NPR1-dependent. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.

Arabidopsis thaliana (taxid: 3702)

>sp|P26337|ESA8C_TRYEQ Putative adenylate cyclase regulatory protein OS=Trypanosoma equiperdum GN=ESAG8C PE=2 SV=1

 Score = 52.4 bits (124), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 87/328 (26%), Positives = 143/328 (43%), Gaps = 55/328 (16%)

Query: 5   NSSLEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTS 64
           +  L++L   SC  +T L A+   RSL++L +  C N+ T  +EE  + S+         
Sbjct: 253 DGKLKVLRYSSCHEITDLTAIGGMRSLEKLSLSGCWNV-TKGLEELCKFSN--------- 302

Query: 65  YLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPP-----------SLKSLRVQGCSK 113
             L EL IS C  L S      L   L+ L V N              +L  L + GC  
Sbjct: 303 --LRELDISGCLVLGSAVVLKNL-INLKVLSVSNCKNFKDLNGLERLVNLDKLNLSGCHG 359

Query: 114 LESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGL--P 171
           + S+   + N ++L+ + I  CE++ +   GL +L  L+ + +    +++SF   G    
Sbjct: 360 VSSLG-FVANLSNLKELDISGCESL-VCFDGLQDLNNLEVLYLR---DVKSFTNVGAIKN 414

Query: 172 CAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTI-GKGGLEEDGLPTNLHSLDIR-----G 225
            +K++E+ +  C R+ +L  GL  LK L++L++ G G +       +LH L +      G
Sbjct: 415 LSKMRELDLSGCERITSLS-GLETLKGLEELSLEGCGEIMSFDPIWSLHHLRVLYVSECG 473

Query: 226 NMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFS 285
           N+E          G    + L EL + GC       P  ++R    + L           
Sbjct: 474 NLEDL-------SGLEGITGLEELYLHGCRKCTNFGPIWNLRNVCVVELSCC-------- 518

Query: 286 FPNLERLSSSIVDLQNLTSLYLVGCPKL 313
             NLE LS  +  L  L  LYL+GC ++
Sbjct: 519 -ENLEDLSG-LQCLTGLEELYLIGCEEI 544

May be involved in the postranscriptional regulation of genes in VSG expression sites.

Trypanosoma equiperdum (taxid: 5694)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	355
356554923	1399	PREDICTED: putative disease resistance R	0.923	0.234	0.426	5e-55
224132254	552	predicted protein [Populus trichocarpa]	0.904	0.581	0.398	7e-46
284026888	1424	CC-NBS-LRR protein [Quercus suber]	0.921	0.229	0.380	3e-45
400131587	1388	FB_MR5 [Malus x robusta]	0.859	0.219	0.390	9e-45
45826061	739	resistance protein [Quercus suber]	0.957	0.460	0.371	5e-44
359495054	1347	PREDICTED: putative disease resistance R	0.904	0.238	0.372	9e-40
359487247	1944	PREDICTED: putative disease resistance p	0.895	0.163	0.353	2e-38
147785815	1662	hypothetical protein VITISV_003572 [Viti	0.895	0.191	0.353	1e-37
225465962	1290	PREDICTED: putative disease resistance R	0.895	0.246	0.374	1e-37
359487255	1336	PREDICTED: putative disease resistance p	0.892	0.237	0.357	8e-36

>gi|356554923|ref|XP_003545790.1| PREDICTED: putative disease resistance RPP13-like protein 1-like [Glycine max]

 Score =  221 bits (562), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 155/363 (42%), Positives = 209/363 (57%), Gaps = 35/363 (9%)

Query: 8    LEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSS----SSSRRYT 63
            LE L I  C S+ ++   QLP SLK L+I  C N+R L ++ G  +SSS      + ++ 
Sbjct: 1023 LERLYICHCDSIVFVTMDQLPHSLKSLEISNCKNLRCL-LDNGTCTSSSIIMHDDNVQHG 1081

Query: 64   SYL---LEELCISSCRSLTSIFSKNELSATLESLEV------------GNLPPSLKSLRV 108
            S +   LE + I  C SLT I    EL  +++ L +            G LP S++ L +
Sbjct: 1082 STIISHLEYVYIGWCPSLTCISRSGELPESVKHLFIWNCSELSCLSMKGQLPKSIERLEI 1141

Query: 109  QGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEG 168
            Q C KLESIA  L  +TSLE+I I+ CEN+K LP GLH L  L+EI I GC NL SFPE 
Sbjct: 1142 QSCPKLESIANRLHRNTSLESIQIWNCENLKSLPEGLHFLVNLKEIKIIGCPNLVSFPEE 1201

Query: 169  GLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGK----GGLEEDGLPTNLHSLDIR 224
            GLP + L E+ I  C +L ALP  ++NL SL++L IG         E   P NL SL I 
Sbjct: 1202 GLPASSLSELSIMSCEKLVALPNSMYNLDSLKELEIGYCPSIQYFPEINFPDNLTSLWI- 1260

Query: 225  GNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIF 284
             +    ++M  W  G ++ S LR+L I G +   +  P E  ++GT   LP++LTSL + 
Sbjct: 1261 NDHNACEAMFNW--GLYKLSFLRDLTIIGGN---LFMPLE--KLGTM--LPSTLTSLTVQ 1311

Query: 285  SFPNLERLSSS-IVDLQNLTSLYLVGCPKLKYFPEKGLPSSLLELWIGGCPLIEEKCRKD 343
             FP+LE LSS     L +L+ L +  CPKL   PEKGLPSSLLEL+I  CP ++E+CRKD
Sbjct: 1312 GFPHLENLSSEGFHKLTSLSKLSIYNCPKLLCLPEKGLPSSLLELYIQDCPFLKEQCRKD 1371

Query: 344  GGQ 346
             G+
Sbjct: 1372 KGR 1374

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132254|ref|XP_002328223.1| predicted protein [Populus trichocarpa] gi|222837738|gb|EEE76103.1| predicted protein [Populus trichocarpa]

 Score =  191 bits (484), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 142/356 (39%), Positives = 197/356 (55%), Gaps = 35/356 (9%)

Query: 8   LEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYT---- 63
           LE L I +C SL     +QLP +LK+L+I+ C N+  L +++G  SSS  S    +    
Sbjct: 177 LEQLRIENCESLISFGRIQLPPTLKKLEIRYCENLLCL-LDDGEGSSSKKSDENTSCSGN 235

Query: 64  -SYLLEELCISSCRSLTSIFSKNELSATLESLEV------------GNLPPSLKSLRVQG 110
            S LLE L +  C SLTSI    EL + L+ L+V              LP  LK L +  
Sbjct: 236 NSSLLEYLYVGICNSLTSI---GELPSALKYLQVCSCSKLKSLSSRDKLPAGLKHLAIDS 292

Query: 111 CSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGL 170
           C  LES+ +   ++ SLE + I++C N++ LP GLH L  L+EISI  C  L SF   GL
Sbjct: 293 CENLESMPDRFQDNMSLENLKIWFCFNLRSLPEGLHKLCHLREISIWYCPALVSFAAEGL 352

Query: 171 PCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTI----GKGGLEEDGLPTNLHSLDIRGN 226
           P   L+ + I  C  L+A+P  +HNL SL++L+I          E+G PT+L  L    +
Sbjct: 353 P-INLRRLFIIKCDGLKAIPDHMHNLMSLEELSIYYCPDIVSFPEEGFPTSLTYLATV-D 410

Query: 227 MEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSF 286
           ++I + +  W  G H+ S+LR L I+G     +SFP  D  MG    LP++L  L+I  F
Sbjct: 411 LKICELLFNW--GMHKLSALRTLIIQG-GFSHISFPSVD--MGVR--LPSALNRLSIEDF 463

Query: 287 PNLERLS-SSIVDLQNLTSLYLVGCPKLKYFPEKGLPSSLLELWIGGCPLIEEKCR 341
           PNLE LS S   +L +L  L +  CPKL  FP KGLPSSLLEL I  CPL+ ++ +
Sbjct: 464 PNLEYLSYSGFQNLSSLERLSISDCPKLTSFPGKGLPSSLLELRIRACPLLVQQIK 519

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|284026888|gb|ADB66335.1| CC-NBS-LRR protein [Quercus suber]

 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 142/373 (38%), Positives = 198/373 (53%), Gaps = 46/373 (12%)

Query: 5    NSSLEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTL------------TMEEGIQ 52
            N+ LE L +  C S+  +A  QLP +LK+L+I  C N++ +              +E I 
Sbjct: 1034 NACLERLCVVRCDSMKSIARGQLPTTLKKLEISHCMNLQCVLDEGEGSSSSSGMHDEDIN 1093

Query: 53   SSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELSATLESL------------EVGNLP 100
            + S +         L+ L I SC SLT++ S  +L ATL  L              G LP
Sbjct: 1094 NRSKTH--------LQYLDIKSCPSLTTLTSSGKLPATLTHLLLRECPKLMCLSSTGKLP 1145

Query: 101  PSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCG 160
             +L+ L +Q  SKL+ IAE L  +TSLE I I+ C  +K LP  LHNL +L++  I  C 
Sbjct: 1146 AALQYLEIQSISKLQKIAERLHQNTSLECIKIWNCHGLKSLPEDLHNLSKLRQFLIFWCQ 1205

Query: 161  NLESFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKG----GLEEDGLPT 216
            +  SFP  GLP + L+ + I+ C  L+ALP G+ NL SLQKL I          ++GLPT
Sbjct: 1206 SFSSFPAAGLP-SNLRVLGIKNCKNLKALPNGMRNLTSLQKLDISHRLDSLPSPQEGLPT 1264

Query: 217  NLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPT 276
            NL  L++  +++ +K M EW  G  + +SL +L I G   D+ S+P E    G  + LP 
Sbjct: 1265 NLIELNMH-DLKFYKPMFEW--GLQQPTSLIKLSIHGECLDVDSYPGER-ENGVMMLLPN 1320

Query: 277  SLTSLAIFSFPNLERLSSSIVDLQNLTS---LYLVGCPKLKYFPEKGLPSSLLELWIGGC 333
            SL+ L I  F NLE LS      QNLTS   L +  C KL   P++GLP SL +L I  C
Sbjct: 1321 SLSILCISYFQNLECLSPK--GFQNLTSLNQLKIYNCLKLTSLPKEGLPPSLTQLEIRNC 1378

Query: 334  PLIEEKCRKDGGQ 346
            PL+ + C  + GQ
Sbjct: 1379 PLLSQHCNNEKGQ 1391

Source: Quercus suber

Species: Quercus suber

Genus: Quercus

Family: Fagaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|400131587|emb|CCH50986.1| FB_MR5 [Malus x robusta]

 Score =  187 bits (474), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 136/348 (39%), Positives = 187/348 (53%), Gaps = 43/348 (12%)

Query: 7    SLEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYL 66
            SL+ +EI  C SL Y A  Q+P++L+R+ I+ C ++R+L   E + S SSSS        
Sbjct: 1068 SLKDIEITECHSLIYFAKSQIPQNLRRIQIRDCRSLRSLVDNEAVGSCSSSSHN-----C 1122

Query: 67   LEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTS 126
            LE L I  C+SLT +   ++L   L  L++ +            C +LE +A        
Sbjct: 1123 LEYLNIERCQSLTLLSLSDQLVRALRELDIYD------------CEQLEFLAPD------ 1164

Query: 127  LETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPE--GGLPCAKLKEVVIRWCG 184
                   +C N       L N R      I  C NL+S P   GG+  + L+E+ I  C 
Sbjct: 1165 -----GLFCNNTNYF---LENFR------IRRCQNLKSLPRLSGGIRGSNLREIRITDCD 1210

Query: 185  RLEALPKGLHNLKSLQKLTIGKGGLEEDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFS 244
            RLEALP+ +HN  SL+KL I          P NL SL I   ++  KS+ E   G HR +
Sbjct: 1211 RLEALPEDMHNFNSLEKLIIDYREGLTCSFPANLTSLMI-WKVKSCKSLWELEWGLHRLT 1269

Query: 245  SLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVD-LQNLT 303
            SLR L I G D DMVSFPP+ +RM T LP   SLT L+I  FPNL++LSS     L +L 
Sbjct: 1270 SLRYLWIGGEDPDMVSFPPDMVRMETLLP--KSLTELSIGGFPNLKKLSSKGFQFLTSLE 1327

Query: 304  SLYLVGCPKLKYFPEKGLPSSLLELWIGGCPLIEEKCRKDGGQYFYSL 351
            SL L  CPKL   P++GLP SL EL I GCP+++E+C+   G+Y++ +
Sbjct: 1328 SLELWDCPKLASIPKEGLPLSLTELCIYGCPVLKERCQPGKGRYWHKI 1375

Source: Malus x robusta

Species: Malus x robusta

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|45826061|gb|AAS77675.1| resistance protein [Quercus suber]

 Score =  184 bits (467), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 139/374 (37%), Positives = 196/374 (52%), Gaps = 34/374 (9%)

Query: 5   NSSLEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIR------TLTMEEGIQSSSSSS 58
           N+ L  L +  C S+  +A  QLP +LKRL+I  C N++        +    +      +
Sbjct: 375 NACLVRLCVVRCDSMKSIARGQLPTTLKRLEISHCMNLQCALDEGEGSSSSSVMHDEDIN 434

Query: 59  SRRYTSYLLEELCISSCRSLTSIFSKNELSATLESL------------EVGNLPPSLKSL 106
           +R  T   L+ L I SC SLT++ S  +L ATL  L              G LP +L+ L
Sbjct: 435 NRSKTH--LQYLDIKSCPSLTTLTSSGKLPATLTHLLLRECPKLMCLSSTGKLPAALQYL 492

Query: 107 RVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFP 166
            +Q   KL+ IAE L  +T LE I I+ C  +K LP  LHNL +L++  I  C +  SFP
Sbjct: 493 EIQSIPKLQKIAERLHQNTFLECIKIWNCHGLKSLPEDLHNLSKLRQFQIVWCTSFSSFP 552

Query: 167 EGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKG----GLEEDGLPTNLHSLD 222
             GLP +  + + I+ C  L+ALP G+ NL SLQKL I          ++GLPTNL  L+
Sbjct: 553 AAGLP-SNPRVLGIKNCKNLKALPNGMRNLTSLQKLDISNRLDSLPSPQEGLPTNLIELN 611

Query: 223 IRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLA 282
           +  +++ +K M EW  G  + +SL +L I G   D+ SFP E    G  + LP SL+ L 
Sbjct: 612 MI-DLKFYKPMFEW--GLQQLTSLIKLSIHGECLDVDSFPGER-ENGAMMLLPNSLSILC 667

Query: 283 IFSFPNLERLSSSIVDLQNLTS---LYLVGCPKLKYFPEKGLPSSLLELWIGGCPLIEEK 339
           I  F NLE LS      QNLTS   L +  C KL   P++GLP SL +L I  CPL+ + 
Sbjct: 668 ISYFQNLECLSPK--GFQNLTSLNQLKIYNCLKLTSLPKEGLPPSLTQLEIRNCPLLSQH 725

Query: 340 CRKDGGQYFYSLFY 353
           C  + GQ +  + +
Sbjct: 726 CNNEKGQEWSKIAH 739

Source: Quercus suber

Species: Quercus suber

Genus: Quercus

Family: Fagaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495054|ref|XP_002267622.2| PREDICTED: putative disease resistance RPP13-like protein 1-like [Vitis vinifera]

 Score =  170 bits (431), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 140/376 (37%), Positives = 201/376 (53%), Gaps = 55/376 (14%)

Query: 6    SSLEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSY 65
            +SL  L I  C+SL+ L  + LP  L+ L I+ C  + TL   EG+  ++ S  R Y   
Sbjct: 987  TSLRNLVIKECQSLSSLPEMGLPPMLETLRIEKCHILETLP--EGMTQNNISLQRLY--- 1041

Query: 66   LLEELCISSCRSLTSIFSKNELSATLESLEVG---------------NLPPSLKSLRVQ- 109
                  I  C SLTS+     + ++L+SLE+                N  P L   R++ 
Sbjct: 1042 ------IEDCDSLTSL----PIISSLKSLEIKQCRKVELPIPEETTQNYYPWLTYFRIRR 1091

Query: 110  GCSKLESIAETLDNSTSLETIHIFYCENMK--ILPSGLHN--LRQLQEISIEGCGNLESF 165
             C  L S    L   T LET++I  C N++   +P GLHN  L  LQ I I  C NL SF
Sbjct: 1092 SCDSLTSFP--LAFFTKLETLYIGDCTNLESFYIPDGLHNMDLTSLQRIHIWNCPNLVSF 1149

Query: 166  PEGGLPCAKLKEVVIRWCGRLEALPKGLHNL-KSLQKLTIGK----GGLEEDGLPTNLHS 220
            P+GGLP + L+++ I  C +L++LP+ +H L  SL+ L I          E GLPTNL S
Sbjct: 1150 PQGGLPASNLRDLCIDNCKKLKSLPQRMHTLLTSLEDLDIYDCSEIVSFPEGGLPTNLSS 1209

Query: 221  LDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTS 280
            LDI    ++ +S  EWG       SLR L I+G    + SF  E       L LP++L S
Sbjct: 1210 LDIGSCYKLMESRKEWG--LQTLPSLRGLVIDGGTGGLESFSEE------WLLLPSTLFS 1261

Query: 281  LAIFSFPNLERLSSSIVDLQNLTSLYLV---GCPKLKYFPEKGLPSSLLELWIGGCPLIE 337
             +IF FP+L+ L +  + LQNLTSL ++    C KLK FP++GLPSSL  L I GCP+++
Sbjct: 1262 FSIFDFPDLKYLDN--LGLQNLTSLEILEMRNCVKLKSFPKQGLPSSLTALQIYGCPVLK 1319

Query: 338  EKCRKDGGQYFYSLFY 353
            ++C++D G+ +  + +
Sbjct: 1320 KRCQRDKGKEWRKIAH 1335

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487247|ref|XP_003633546.1| PREDICTED: putative disease resistance protein At3g14460-like [Vitis vinifera]

 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 129/365 (35%), Positives = 194/365 (53%), Gaps = 47/365 (12%)

Query: 6    SSLEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSY 65
            +SL+ L I  C SL     + LP  L+RL+I  C  + +L   EG+  ++++        
Sbjct: 980  TSLKNLNIQQCESLASFPEMALPPMLERLEIIDCPTLESLP--EGMMQNNTT-------- 1029

Query: 66   LLEELCISSCRSLTS------------IFSKNELSATLESLEVGNLPPSLKSLRVQGCSK 113
             L+ L I  C SL S            I+   +L   L+     N   SL    +  C  
Sbjct: 1030 -LQHLSIEYCDSLRSLPRDIDSLKTLSIYGCKKLELALQEDMTHNHYASLTKFVISNCDS 1088

Query: 114  LESIAETLDNSTSLETIHIFYCENMKIL--PSGLH--NLRQLQEISIEGCGNLESFPEGG 169
            L S    L + T LET+H+++C N++ L  P GLH  +L  LQ ++   C NL SFP+GG
Sbjct: 1089 LTSFP--LASFTKLETLHLWHCTNLESLYIPDGLHHMDLTSLQILNFYNCPNLVSFPQGG 1146

Query: 170  LPCAKLKEVVIRWCGRLEALPKGLHN-LKSLQKLTIGKGGLEED-----GLPTNLHSLDI 223
            LP   L  + I WC +L++LP+G+H+ L SL++L I +G  E D     GLPTNL  LDI
Sbjct: 1147 LPTPNLTSLWISWCKKLKSLPQGMHSLLTSLERLRI-EGCPEIDSFPIEGLPTNLSDLDI 1205

Query: 224  RGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMV-SFPPEDIRMGTTLPLPTSLTSLA 282
            R   ++    +EW         L  L + G +++ + SFP E         LP++LTSL 
Sbjct: 1206 RNCNKLMACRMEW--HLQTLPFLSWLGVGGPEEERLESFPEERF-------LPSTLTSLI 1256

Query: 283  IFSFPNLERLSSS-IVDLQNLTSLYLVGCPKLKYFPEKGLPSSLLELWIGGCPLIEEKCR 341
            I +FPNL+ L +  +  L +L +L +  C KL+  P++GLPSSL  L+I  CPL+E++C+
Sbjct: 1257 IDNFPNLKSLDNKGLEHLTSLETLSIYRCEKLESLPKQGLPSSLSHLYILKCPLLEKRCQ 1316

Query: 342  KDGGQ 346
            +D G+
Sbjct: 1317 RDKGK 1321

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147785815|emb|CAN66378.1| hypothetical protein VITISV_003572 [Vitis vinifera]

 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 129/365 (35%), Positives = 193/365 (52%), Gaps = 47/365 (12%)

Query: 6    SSLEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSY 65
            +SL+ L I  C SL     + LP  L+RL+I  C  + +L   EG+  ++++        
Sbjct: 980  TSLKNLNIQQCESLASFPEMALPPMLERLEIIDCPTLESLP--EGMMQNNTT-------- 1029

Query: 66   LLEELCISSCRSLTS------------IFSKNELSATLESLEVGNLPPSLKSLRVQGCSK 113
             L+ L I  C SL S            I+   +L   L+     N   SL    +  C  
Sbjct: 1030 -LQHLSIEYCDSLRSLPRDIDSLKTLSIYGCKKLELALQEDMTHNHYASLTXFVISNCDS 1088

Query: 114  LESIAETLDNSTSLETIHIFYCENMKIL--PSGLH--NLRQLQEISIEGCGNLESFPEGG 169
            L S    L + T LET+H+++C N++ L  P GLH  +L  LQ ++   C NL SFP+GG
Sbjct: 1089 LTSFP--LASFTKLETLHLWHCTNLESLYIPDGLHHMDLTSLQILNFYNCPNLVSFPQGG 1146

Query: 170  LPCAKLKEVVIRWCGRLEALPKGLHN-LKSLQKLTIGKGGLEED-----GLPTNLHSLDI 223
            LP   L  + I WC +L++LP+G+H+ L SL++L I +G  E D     GLPTNL  LDI
Sbjct: 1147 LPTPNLTSLWISWCKKLKSLPQGMHSLLTSLERLRI-EGCPEIDSFPIEGLPTNLSDLDI 1205

Query: 224  RGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMV-SFPPEDIRMGTTLPLPTSLTSLA 282
            R   ++    +EW         L  L   G +++ + SFP E         LP++LTSL 
Sbjct: 1206 RNCNKLMACRMEW--HLQTLPFLSWLGXGGPEEERLESFPEERF-------LPSTLTSLI 1256

Query: 283  IFSFPNLERLSSS-IVDLQNLTSLYLVGCPKLKYFPEKGLPSSLLELWIGGCPLIEEKCR 341
            I +FPNL+ L +  +  L +L +L +  C KL+  P++GLPSSL  L+I  CPL+E++C+
Sbjct: 1257 IDNFPNLKSLDNKGLEHLTSLETLSIYRCEKLESLPKQGLPSSLSHLYILKCPLLEKRCQ 1316

Query: 342  KDGGQ 346
            +D G+
Sbjct: 1317 RDKGK 1321

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465962|ref|XP_002269685.1| PREDICTED: putative disease resistance RPP13-like protein 1-like [Vitis vinifera]

 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 140/374 (37%), Positives = 201/374 (53%), Gaps = 56/374 (14%)

Query: 2    CDTNSSLEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRR 61
            CD  +SL  L I  C+SL+ L  + LP  L+ L+I+ C  + TL   EG+  +++S    
Sbjct: 926  CDELTSLRKLVIKECQSLSSLPEMGLPPMLETLEIEKCHILETLP--EGMTQNNTS---- 979

Query: 62   YTSYLLEELCISSCRSLTSIFSKNELSATLESLEVG---------------NLPPSLKSL 106
                 L+ L I  C SLTS+     + ++L+SLE+                N  P L  L
Sbjct: 980  -----LQSLYIEDCDSLTSL----PIISSLKSLEIKQCRKVELPLPEETTQNYYPWLAYL 1030

Query: 107  RV-QGCSKLESIAETLDNSTSLETIHIFYCENMK--ILPSGLHN--LRQLQEISIEGCGN 161
            R+ + C  L S    L   T L+T+HI+ CEN++   +P GL N  L  L +I I+ C N
Sbjct: 1031 RINRSCDSLTSFP--LAFFTKLKTLHIWNCENLESFYIPDGLRNMDLTSLHKIKIDDCPN 1088

Query: 162  LESFPEGGLPCAKLKEVVIRWCGRLEALPKGLHN-LKSLQKLTIGK----GGLEEDGLPT 216
            L SFP+GGL  + L+E+ I  C +L++LP+ +H  L SL KL I          E GLPT
Sbjct: 1089 LVSFPQGGLRASNLRELFISNCKKLKSLPQRMHTLLTSLDKLWISDCPEIVSFPEGGLPT 1148

Query: 217  NLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIE-GCDDDMVSFPPEDIRMGTTLPLP 275
            NL SL I    ++ +S  EW  G     SLR L I  G +  + SF  E       L LP
Sbjct: 1149 NLSSLHIGSCYKLMESRKEW--GLQTLPSLRRLVIVGGTEGGLESFSEE------WLLLP 1200

Query: 276  TSLTSLAIFSFPNLERLSSSIVDLQNLTS---LYLVGCPKLKYFPEKGLPSSLLELWIGG 332
            ++L SL I  FP+L+ L +  + L+NLTS   L +  C KLK FP++GLP+SL  L I  
Sbjct: 1201 STLFSLDISDFPDLKSLDN--LGLENLTSLERLVIWNCDKLKSFPKQGLPASLSVLEIYR 1258

Query: 333  CPLIEEKCRKDGGQ 346
            CPL++++C++D G+
Sbjct: 1259 CPLLKKRCQRDKGK 1272

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487255|ref|XP_002269744.2| PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]

 Score =  157 bits (397), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 130/364 (35%), Positives = 184/364 (50%), Gaps = 47/364 (12%)

Query: 6    SSLEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSY 65
            +SL+ L I +C SL     + LP  L+ L+I+ C  + +L   EG+  ++++        
Sbjct: 971  TSLKNLNIENCESLASFPEMALPPMLESLEIRACPTLESLP--EGMMQNNTT-------- 1020

Query: 66   LLEELCISSCRSLTS------------IFSKNELSATLESLEVGNLPPSLKSLRVQGC-S 112
             L+ L I  C SL S            I    +L   L      N   SL    +  C  
Sbjct: 1021 -LQCLEIWHCGSLRSLPRDIDSLKRLVICECKKLELALHEDMTHNHYASLTKFDITSCCD 1079

Query: 113  KLESIAETLDNSTSLETIHIFYCENMKIL--PSGLH--NLRQLQEISIEGCGNLESFPEG 168
             L S    L + T LET+  F C N++ L  P GLH  +L  LQ + I  C NL SFP G
Sbjct: 1080 SLTSFP--LASFTKLETLDFFNCGNLESLYIPDGLHHVDLTSLQSLEIRNCPNLVSFPRG 1137

Query: 169  GLPCAKLKEVVIRWCGRLEALPKGLHN-LKSLQKLTIGK----GGLEEDGLPTNLHSLDI 223
            GLP   L+ + I  C +L++LP+G+H  L SLQ L I          E GLPTNL  LDI
Sbjct: 1138 GLPTPNLRRLWILNCEKLKSLPQGMHTLLTSLQHLHISNCPEIDSFPEGGLPTNLSELDI 1197

Query: 224  RGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAI 283
            R   ++  + +EW  G      LR L IEG +++   FP E         LP++LTSL I
Sbjct: 1198 RNCNKLVANQMEW--GLQTLPFLRTLTIEGYENE--RFPEERF-------LPSTLTSLEI 1246

Query: 284  FSFPNLERLSSS-IVDLQNLTSLYLVGCPKLKYFPEKGLPSSLLELWIGGCPLIEEKCRK 342
              FPNL+ L +  +  L +L +L +  C  LK FP++GLPSSL  L+I  CPL+ ++C++
Sbjct: 1247 RGFPNLKSLDNKGLQHLTSLETLRIRECGNLKSFPKQGLPSSLSSLYIEECPLLNKRCQR 1306

Query: 343  DGGQ 346
            D G+
Sbjct: 1307 DKGK 1310

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	355
TAIR|locus:2091662	1424	AT3G14460 [Arabidopsis thalian	0.890	0.221	0.289	6e-20
TAIR|locus:2098110	1219	AT3G44670 [Arabidopsis thalian	0.661	0.192	0.290	3.3e-12
TAIR|locus:2053405	1215	AT2G14080 [Arabidopsis thalian	0.909	0.265	0.252	9.4e-12
TAIR|locus:2115870	1234	AT4G08450 [Arabidopsis thalian	0.591	0.170	0.279	1.2e-11
TAIR|locus:2163426	1187	TAO1 "target of AVRB operation	0.549	0.164	0.275	3.3e-11
TAIR|locus:2122965	1210	AT4G19510 [Arabidopsis thalian	0.692	0.203	0.244	7e-11
TAIR|locus:2147992	1189	AT5G11250 [Arabidopsis thalian	0.704	0.210	0.268	1.2e-10
TAIR|locus:2174900	968	AT5G40060 [Arabidopsis thalian	0.628	0.230	0.266	3.5e-10
TAIR|locus:2076043	1194	RPP1 "recognition of peronospo	0.487	0.144	0.280	4.6e-10
TAIR|locus:2170488	1205	AT5G46260 [Arabidopsis thalian	0.650	0.191	0.288	4.6e-10

TAIR|locus:2091662 AT3G14460 [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 6.0e-20, P = 6.0e-20
 Identities = 107/369 (28%), Positives = 171/369 (46%)

Query:     3 DTNSSLEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQXXXXXXXRRY 62
             D  + +E L++     +++L  ++LP++L+ L I  C  + +L   E +          Y
Sbjct:  1070 DDETDMEYLKV---TDISHL--MELPQNLQSLHIDSCDGLTSLP--ENL-------TESY 1115

Query:    63 TSYLLEELCISSCRSLTSIFSKNELSATLESLEVG-----NLPPSLKSLRV--------- 108
              +  L EL I +C SL S F  +    TL++L +      N   SL+  R          
Sbjct:  1116 PN--LHELLIIACHSLES-FPGSHPPTTLKTLYIRDCKKLNFTESLQPTRSYSQLEYLFI 1172

Query:   109 -QGCSKLESIAETLDNSTSLETIHIFYCENMKI--LPSGLHNLR-QLQEISIEGCGNLES 164
                CS L +   +L     L ++ I  CE+ K   + +GL + R  L+ + I  C NLE+
Sbjct:  1173 GSSCSNLVNFPLSL--FPKLRSLSIRDCESFKTFSIHAGLGDDRIALESLEIRDCPNLET 1230

Query:   165 FPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGK-GGLEE---DGLPTNLHS 220
             FP+GGLP  KL  +++  C +L+ALP+ L  L SL  L I K   +E     G P+NL +
Sbjct:  1231 FPQGGLPTPKLSSMLLSNCKKLQALPEKLFGLTSLLSLFIIKCPEIETIPGGGFPSNLRT 1290

Query:   221 LDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGXXXXXXXXXXX 280
             L I    +     IEWG       +LR L I+G ++D+ SFP E +              
Sbjct:  1291 LCI-SLCDKLTPRIEWG--LRDLENLRNLEIDGGNEDIESFPEEGL-------LPKSVFS 1340

Query:   281 XAIFSFPNLERLS-SSIVDLQNLTSLYLVGCPKLKYFPEKGLPSSLLELWIGGCPLIEEK 339
               I  F NL+ L+     D + + ++ + GC KL+   ++ LP  L  L I  C L+ E 
Sbjct:  1341 LRISRFENLKTLNRKGFHDTKAIETMEISGCDKLQISIDEDLPP-LSCLRISSCSLLTET 1399

Query:   340 CRKDGGQYF 348
               +   ++F
Sbjct:  1400 FAEVETEFF 1408

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2098110 AT3G44670 [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 3.3e-12, P = 3.3e-12
 Identities = 76/262 (29%), Positives = 120/262 (45%)

Query:    65 YLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAE--TLD 122
             Y  + +C+ S  +   +   +   + L  L  G     L++L+    S  E + E   L 
Sbjct:   679 YSYQNICLPSTFNPEFLVELHMSFSKLRKLWEGT--KQLRNLKWMDLSNSEDLKELPNLS 736

Query:   123 NSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRW 182
              +T+LE + +  C ++  LPS +  L  LQ + ++ C +L   P  G    KL+E+ +  
Sbjct:   737 TATNLEELKLRDCSSLVELPSSIEKLTSLQRLYLQRCSSLVELPSFG-NATKLEELYLEN 795

Query:   183 CGRLEALPKGLHNLKSLQKLT-IGKGGLEEDGLP-----TNLHSLDIRGNMEIWKSMIEW 236
             C  LE LP  + N  +LQ+L+ I    + E  LP     TNL  LD+ GN     S+IE 
Sbjct:   796 CSSLEKLPPSI-NANNLQQLSLINCSRVVE--LPAIENATNLQKLDL-GNCS---SLIEL 848

Query:   237 GQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGXXXXXXXXXXXXAIFSFPNLERLSSSI 296
                    ++L+EL I GC   +V  P     +G             + +  NL  L  +I
Sbjct:   849 PLSIGTATNLKELNISGCSS-LVKLPSS---IGDITNLKEFD----LSNCSNLVELPINI 900

Query:   297 VDLQNLTSLYLVGCPKLKYFPE 318
              +L+ L +L L GC +LK FPE
Sbjct:   901 -NLKFLDTLNLAGCSQLKSFPE 921

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=ISS

TAIR|locus:2053405 AT2G14080 [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 9.4e-12, P = 9.4e-12
 Identities = 88/348 (25%), Positives = 155/348 (44%)

Query:     6 SSLEILEIWSCRSLTYLA-AVQLPRSLKRLDIQCCSNIRTLTMEEGIQXXXXXXXRRYTS 64
             ++LE+L +  C SL  L  ++     L +L++  CS++  L    G           +  
Sbjct:   697 TNLEVLNLNGCSSLVELPFSIGNATKLLKLELSGCSSLLELPSSIGNAINLQTIDFSHCE 756

Query:    65 YLLEELCISSCRSLTSIFSKNELS--ATLESL--EVGNLPPSLKSLRVQGCSKLESIAET 120
              L+E    SS  + T++  + +LS  ++L+ L   +GN   +LK L +  CS L+ +  +
Sbjct:   757 NLVE--LPSSIGNATNL-KELDLSCCSSLKELPSSIGNCT-NLKKLHLICCSSLKELPSS 812

Query:   121 LDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVI 180
             + N T+L+ +H+  C ++  LPS + N   L+++ + GC +L   P        LK + +
Sbjct:   813 IGNCTNLKELHLTCCSSLIKLPSSIGNAINLEKLILAGCESLVELPSFIGKATNLKILNL 872

Query:   181 RWCGRLEALPKGLHNLKSLQKLTIGKGGLEEDGLPTN-----LHSLDIRGNMEIWKSMIE 235
              +   L  LP  + NL  L +L + +G  +   LPTN     L+ LD+   + + K+   
Sbjct:   873 GYLSCLVELPSFIGNLHKLSELRL-RGCKKLQVLPTNINLEFLNELDLTDCI-LLKTFPV 930

Query:   236 WGQGFHRFSSLRELRIEGCDDDMVSFPP-EDIRM----GXXXXXXXXXXXXAI-FSFPNL 289
                   R   LR  +IE     + S+P  ED++M                  +  S  N+
Sbjct:   931 ISTNIKRLH-LRGTQIEEVPSSLRSWPRLEDLQMLYSENLSEFSHVLERITVLELSDINI 989

Query:   290 ERLSSSIVDLQNLTSLYLVGCPKLKYFPEKGLPSSLLELWIGGCPLIE 337
               ++  +  +  L  L L GC KL   P+  L  SL+ L    C  +E
Sbjct:   990 REMTPWLNRITRLRRLKLSGCGKLVSLPQ--LSDSLIILDAENCGSLE 1035

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2115870 AT4G08450 [Arabidopsis thaliana (taxid:3702)]

 Score = 190 (71.9 bits), Expect = 1.2e-11, P = 1.2e-11
 Identities = 64/229 (27%), Positives = 108/229 (47%)

Query:    91 LESLEVGNLP-PSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLR 149
             LE L  G +P   LK++ + G   L+     L  +T+LET+ + +C ++  +PS + NL 
Sbjct:   621 LEKLWDGVMPLQCLKNMNLFGSENLKEFPN-LSLATNLETLSLGFCLSLVEVPSTIGNLN 679

Query:   150 QLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGL 209
             +L  +++ GC NLE FP   +    L ++V+  C RL+  P    N+    +L +    +
Sbjct:   680 KLTYLNMSGCHNLEKFP-ADVNLKSLSDLVLNGCSRLKIFPAISSNIS---ELCLNSLAV 735

Query:   210 EEDGLPTNLHSLDIRGNMEIW-KSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRM 268
             EE   P+NLH L+    + IW  + ++   G    +SL+ + +     ++   P  D+ M
Sbjct:   736 EE--FPSNLH-LENLVYLLIWGMTSVKLWDGVKVLTSLKTMHLRD-SKNLKEIP--DLSM 789

Query:   269 GXXXXXXXXXXXXAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFP 317
                          +I   P      SSI +L NL  L + GC  L+ FP
Sbjct:   790 ASNLLILNLEQCISIVELP------SSIRNLHNLIELDMSGCTNLETFP 832

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2163426 TAO1 "target of AVRB operation1" [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 3.3e-11, P = 3.3e-11
 Identities = 56/203 (27%), Positives = 101/203 (49%)

Query:     6 SSLEILEIWSCRSLTYL-AAVQLPRSLKRLDIQCCSNIRTLTMEEGIQXXXXXXXRRYTS 64
             +SL+ L +  C SL  + +++    +LK++    CS++  L    G             S
Sbjct:   752 TSLKELNLSGCSSLLEIPSSIGNIVNLKKVYADGCSSLVQLPSSIGNNTNLKELHLLNCS 811

Query:    65 YLLEELCISSCRSLTSIFSKNELSATLESLE---VGNLPPSLKSLRVQGCSKLESIAETL 121
              L+E  C SS  +LT +   N LS  L  ++   +GN+  +L+SL +  CS L  +  T+
Sbjct:   812 SLME--CPSSMLNLTRLEDLN-LSGCLSLVKLPSIGNVI-NLQSLYLSDCSSLMELPFTI 867

Query:   122 DNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIR 181
             +N+T+L+T+++  C N+  LPS + N+  LQ + + GC +L+  P        L+ + + 
Sbjct:   868 ENATNLDTLYLDGCSNLLELPSSIWNITNLQSLYLNGCSSLKELPSLVENAINLQSLSLM 927

Query:   182 WCGRLEALPKGLHNLKSLQKLTI 204
              C  L  LP  +  + +L  L +
Sbjct:   928 KCSSLVELPSSIWRISNLSYLDV 950

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2122965 AT4G19510 [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 7.0e-11, Sum P(2) = 7.0e-11
 Identities = 65/266 (24%), Positives = 130/266 (48%)

Query:     7 SLEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQXXXXXXXRRYTSYL 66
             SL  +++   + L  L+ +   ++L+RLD++ C+++  L   + +        R  TS  
Sbjct:   635 SLRWVDLGQSKDLLNLSGLSRAKNLERLDLEGCTSLDLLGSVKQMNELIYLNLRDCTS-- 692

Query:    67 LEELCIS-SCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNST 125
             LE L      +SL ++     LS  L+  +   +  S++SL ++G + +E + E +++  
Sbjct:   693 LESLPKGFKIKSLKTLI----LSGCLKLKDFHIISESIESLHLEGTA-IERVVEHIESLH 747

Query:   126 SLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFP--EGGLPCAKLKEVVIRWC 183
             SL  +++  CE +K LP+ L+ L+ LQE+ + GC  LES P  +  + C    E+++   
Sbjct:   748 SLILLNLKNCEKLKYLPNDLYKLKSLQELVLSGCSALESLPPIKEKMECL---EILLMDG 804

Query:   184 GRLEALPKGLHNLKSLQKLTIGKGGLEEDGLPTNLHSLDIRGNM---EIWKSMIEWGQGF 240
               ++  P+ +  L +L+  +  +  +++    T L  L   GN    +++ +     +  
Sbjct:   805 TSIKQTPE-MSCLSNLKICSFCRPVIDDS---TGLVVLPFSGNSFLSDLYLTNCNIDKLP 860

Query:   241 HRFSSLRELRIEGCDDDMVSFPPEDI 266
              +FSSLR LR      + +   PE I
Sbjct:   861 DKFSSLRSLRCLCLSRNNIETLPESI 886

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2147992 AT5G11250 [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 72/268 (26%), Positives = 127/268 (47%)

Query:     2 CDTNS-SLEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQXXXXXXXR 60
             C  N+ +LE L++  C SL  L +     +L++L ++ CSN+  L    G          
Sbjct:   718 CIGNAINLEDLDLNGCSSLVELPSFGDAINLQKLLLRYCSNLVELPSSIGNAINLRELDL 777

Query:    61 RYTSYLLE-ELCISSCRSLTSIFSKNELSATLE-SLEVGNLPPSLKSLRVQGCSKLESIA 118
              Y S L+     I +  +L  I   N  S  LE    +GN   +L+ L ++ C+KL  + 
Sbjct:   778 YYCSSLIRLPSSIGNAINLL-ILDLNGCSNLLELPSSIGNAI-NLQKLDLRRCAKLLELP 835

Query:   119 ETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEV 178
              ++ N+ +L+ + +  C ++  LPS + N   L  +++  C NL   P       KL+E+
Sbjct:   836 SSIGNAINLQNLLLDDCSSLLELPSSIGNATNLVYMNLSNCSNLVELPLSIGNLQKLQEL 895

Query:   179 VIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEE--DGLPTNLHSLDIRGNM--EIWKSMI 234
             +++ C +LE LP  + NL+SL  L +    + +    + TN+ +L + G    E+  S+ 
Sbjct:   896 ILKGCSKLEDLPINI-NLESLDILVLNDCSMLKRFPEISTNVRALYLCGTAIEEVPLSIR 954

Query:   235 EWGQGFHRFSSLRELRIEGCDDDMVSFP 262
              W +       L EL +    D++V FP
Sbjct:   955 SWPR-------LDEL-LMSYFDNLVEFP 974

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2174900 AT5G40060 [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 3.5e-10, P = 3.5e-10
 Identities = 64/240 (26%), Positives = 114/240 (47%)

Query:    84 KNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPS 143
             ++EL    E   VG+L   LK + ++    L+ I + L  +T+L+T+++ YC ++  + S
Sbjct:   426 ESELEKLWEG--VGSLT-CLKDMDLEKSKNLKEIPD-LSMATNLKTLNLKYCSSLVKISS 481

Query:   144 GLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLT 203
              + NL +L ++++EGC NLE+ P  G+    L  + +R C RL   P   +N+  L    
Sbjct:   482 SIQNLNKLTKLNMEGCTNLETLP-AGINLKSLHRLDLRGCSRLRMFPDISNNISVL---F 537

Query:   204 IGKGGLEEDGLPTNLHSLDIRG-NMEIWKSMIEWGQGFHRFSSLRELR----IEGCDDDM 258
             + K  +EE   P+NLH   +   +M+   S   W +G    + L ++      +  +   
Sbjct:   538 LDKTSIEE--FPSNLHLKKLFDLSMQQMNSEKLW-EGVQPLTCLMKMLSPPLAKNFNTLY 594

Query:   259 VSFPPEDIRMGXXXXXXXXXXXXAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPE 318
             +S  P  + +             +I    NLE L +   + + L  L L GC KL+ FP+
Sbjct:   595 LSDIPSLVELPCGIQNLKKLMELSIRRCKNLESLPTG-ANFKYLDYLDLSGCSKLRSFPD 653

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0016556 "mRNA modification" evidence=RCA

TAIR|locus:2076043 RPP1 "recognition of peronospora parasitica 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 4.6e-10, P = 4.6e-10
 Identities = 53/189 (28%), Positives = 97/189 (51%)

Query:    63 TSYLLEELCISSCRSLTSIFSKNELSATLESLEVGN------LPP-----SLKSLRVQGC 111
             T+  LEEL + +C SL  + S  E   +L+ L++ N      LP       L+ L++Q C
Sbjct:   735 TATNLEELKLRNCSSLVELPSSIEKLTSLQILDLENCSSLEKLPAIENATKLRELKLQNC 794

Query:   112 SKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLP 171
             S L  +  ++  +T+L+ ++I  C ++  LPS + ++  L+   +  C +L + P     
Sbjct:   795 SSLIELPLSIGTATNLKQLNISGCSSLVKLPSSIGDITDLEVFDLSNCSSLVTLPSSIGN 854

Query:   172 CAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGK-GGLEE-DGLPTNLHSLDIRGNM-- 227
                L ++++R C +LEALP  + NLKSL  L +     L+    + T++  L ++G    
Sbjct:   855 LQNLCKLIMRGCSKLEALPINI-NLKSLDTLNLTDCSQLKSFPEISTHISELRLKGTAIK 913

Query:   228 EIWKSMIEW 236
             E+  S++ W
Sbjct:   914 EVPLSIMSW 922

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0002239 "response to oomycetes" evidence=IDA

GO:0000139 "Golgi membrane" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP;TAS

GO:0030275 "LRR domain binding" evidence=ISS

TAIR|locus:2170488 AT5G46260 [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 4.6e-10, P = 4.6e-10
 Identities = 71/246 (28%), Positives = 114/246 (46%)

Query:    88 SATLESLEVGNLPPS-LKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLH 146
             ++ L  L  G +P + LK + + G   L+ I + L  +T+LET++   C+++  LPS + 
Sbjct:   614 NSKLHKLWEGAVPLTCLKEMDLDGSVNLKEIPD-LSMATNLETLNFENCKSLVELPSFIQ 672

Query:   147 NLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGK 206
             NL +L ++++  C +LE+ P G      L  +    C +L   P    N+  L  LT G 
Sbjct:   673 NLNKLLKLNMAFCNSLETLPTG-FNLKSLNRIDFTKCSKLRTFPDFSTNISDLY-LT-GT 729

Query:   207 GGLEEDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFP---- 262
               +EE  LP+NLH L+   ++ I K  I+  Q       L+ L +      + S      
Sbjct:   730 N-IEE--LPSNLH-LENLIDLRISKKEIDGKQWEGVMKPLKPL-LAMLSPTLTSLQLQNI 784

Query:   263 PEDIRMGXXXXXXXXXXXXAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPEKGLP 322
             P  + +              I +  NLE L + I +LQ+L SL   GC +L+ FPE    
Sbjct:   785 PNLVELPCSFQNLIQLEVLDITNCRNLETLPTGI-NLQSLDSLSFKGCSRLRSFPEISTN 843

Query:   323 SSLLEL 328
              S L L
Sbjct:   844 ISSLNL 849

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	355
PLN03210	1153	PLN03210, PLN03210, Resistant to P	2e-12
PLN03210	1153	PLN03210, PLN03210, Resistant to P	2e-05
PLN03210	1153	PLN03210, PLN03210, Resistant to P	3e-05

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 68.0 bits (166), Expect = 2e-12
 Identities = 66/229 (28%), Positives = 109/229 (47%), Gaps = 34/229 (14%)

Query: 103 LKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNL 162
           L+++ ++G   L+ I + L  +T+LET+ +  C ++  LPS +  L +L+++ +  C NL
Sbjct: 636 LRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENL 694

Query: 163 ESFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEEDGLPTNLH--S 220
           E  P  G+    L  + +  C RL++ P    N+     L + +  +EE   P+NL   +
Sbjct: 695 EILPT-GINLKSLYRLNLSGCSRLKSFPDISTNISW---LDLDETAIEE--FPSNLRLEN 748

Query: 221 LDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRM-----GTTLPLP 275
           LD     E+ KS   W     R   L  L        M    P   R+      + + LP
Sbjct: 749 LDELILCEM-KSEKLWE----RVQPLTPL--------MTMLSPSLTRLFLSDIPSLVELP 795

Query: 276 TS------LTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPE 318
           +S      L  L I +  NLE L + I +L++L SL L GC +L+ FP+
Sbjct: 796 SSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD 843

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 50/201 (24%), Positives = 81/201 (40%), Gaps = 53/201 (26%)

Query: 6   SSLEILEIWSCRSLTYL-AAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTS 64
           ++LE L++  C SL  L +++Q    L+ LD+  C N+  L     ++S           
Sbjct: 657 TNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKS----------- 705

Query: 65  YLLEELCISSCRSLTSI------FSKNELSAT----------LESLE------------- 95
             L  L +S C  L S        S  +L  T          LE+L+             
Sbjct: 706 --LYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLW 763

Query: 96  ---------VGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLH 146
                    +  L PSL  L +     L  +  ++ N   LE + I  C N++ LP+G+ 
Sbjct: 764 ERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI- 822

Query: 147 NLRQLQEISIEGCGNLESFPE 167
           NL  L+ + + GC  L +FP+
Sbjct: 823 NLESLESLDLSGCSRLRTFPD 843

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 46.0 bits (109), Expect = 3e-05
 Identities = 54/242 (22%), Positives = 91/242 (37%), Gaps = 76/242 (31%)

Query: 8   LEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLL 67
           L  +++   ++L  +  + +  +L+ L +  CS++  L            SS +Y +  L
Sbjct: 636 LRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVEL-----------PSSIQYLNK-L 683

Query: 68  EELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQGCSKLES-------IAET 120
           E+L +S C +             LE L  G    SL  L + GCS+L+S       I+  
Sbjct: 684 EDLDMSRCEN-------------LEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWL 730

Query: 121 LDNSTSLETI----------HIFYCEN---------------MKIL-------------- 141
             + T++E             +  CE                M +L              
Sbjct: 731 DLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPS 790

Query: 142 ----PSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLK 197
               PS + NL +L+ + IE C NLE+ P  G+    L+ + +  C RL   P    N+ 
Sbjct: 791 LVELPSSIQNLHKLEHLEIENCINLETLPT-GINLESLESLDLSGCSRLRTFPDISTNIS 849

Query: 198 SL 199
            L
Sbjct: 850 DL 851

syringae 6; Provisional. Length = 1153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	355
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.88
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.88
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.88
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.85
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.81
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.75
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.69
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.66
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.64
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.62
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.61
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.61
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.6
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.59
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.56
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.45
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.31
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.31
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.28
KOG4341	483	consensus F-box protein containing LRR [General fu	99.17
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.15
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.07
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.05
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.01
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.93
KOG4341	483	consensus F-box protein containing LRR [General fu	98.72
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.64
PRK15386	426	type III secretion protein GogB; Provisional	98.62
PRK15386	426	type III secretion protein GogB; Provisional	98.62
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.55
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.49
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.48
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.48
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.47
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.41
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.4
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.4
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.23
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.19
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.13
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.1
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.09
PLN03150	623	hypothetical protein; Provisional	98.05
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.99
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.86
PLN03150	623	hypothetical protein; Provisional	97.84
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.84
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.77
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.75
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.68
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.67
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.6
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.56
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.33
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.24
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.09
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.98
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.96
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.76
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.56
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	96.42
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	95.89
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.51
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	95.45
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	94.97
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	94.88
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	94.32
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.26
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	93.79
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.49
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.15
KOG3864	221	consensus Uncharacterized conserved protein [Funct	92.1
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	91.45
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	86.28
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	85.12
smart00370	26	LRR Leucine-rich repeats, outliers.	85.12

>PLN03210 Resistant to P

Probab=99.90  E-value=2.3e-22  Score=208.28  Aligned_cols=253  Identities=22%  Similarity=0.368  Sum_probs=159.8

Q ss_pred             cccccccEEEecCCCccchhccccccchhccccccCCCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcc
Q 018478           62 YTSYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKIL  141 (355)
Q Consensus        62 ~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  141 (355)
                      ..+++|+.|+++++..++.+             +....+++|+.|++++|..+..+|..++.+++|+.|++++|..++.+
T Consensus       631 ~~l~~Lk~L~Ls~~~~l~~i-------------p~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~L  697 (1153)
T PLN03210        631 HSLTGLRNIDLRGSKNLKEI-------------PDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEIL  697 (1153)
T ss_pred             ccCCCCCEEECCCCCCcCcC-------------CccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCcc
Confidence            44677777777776666666             65555678888888888777777777777888888888887777777


Q ss_pred             cccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEccccCcCcccccccCCCCCceEEEee---cCc-------CC
Q 018478          142 PSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGK---GGL-------EE  211 (355)
Q Consensus       142 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~---~~i-------~~  211 (355)
                      |..+ ++++|+.|++++|..++.+|..   ..+|+.|+++++. ++.+|..+ .+++|+.|.+..   ..+       +.
T Consensus       698 p~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~-i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~  771 (1153)
T PLN03210        698 PTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETA-IEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTP  771 (1153)
T ss_pred             CCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCc-cccccccc-cccccccccccccchhhccccccccch
Confidence            7654 6778888888887766666643   2467777777743 55566443 344555554431   000       00


Q ss_pred             --CCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCcccc-------------ccCCCCCCCC
Q 018478          212 --DGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDI-------------RMGTTLPLPT  276 (355)
Q Consensus       212 --~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-------------~~~~~~~~~~  276 (355)
                        ...+++|+.|++++|.....++..    ++++++|+.|++++ |..++.+|....             ....-...++
T Consensus       772 ~~~~~~~sL~~L~Ls~n~~l~~lP~s----i~~L~~L~~L~Ls~-C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~  846 (1153)
T PLN03210        772 LMTMLSPSLTRLFLSDIPSLVELPSS----IQNLHKLEHLEIEN-CINLETLPTGINLESLESLDLSGCSRLRTFPDIST  846 (1153)
T ss_pred             hhhhccccchheeCCCCCCccccChh----hhCCCCCCEEECCC-CCCcCeeCCCCCccccCEEECCCCCcccccccccc
Confidence              112345555666555544433331    44555555555555 555555443220             0000001234


Q ss_pred             ccceEEeccCCCcccccccCCCCCCccEEeeCCCCCCcccCCCC-CCCCccEEEecCCchhhHh
Q 018478          277 SLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPEKG-LPSSLLELWIGGCPLIEEK  339 (355)
Q Consensus       277 ~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~L~~L~l~~c~~l~~~  339 (355)
                      +|+.|++++ +.++.+|.++..+++|+.|++.+|++++.++... -+++|+.+++.+|++++..
T Consensus       847 nL~~L~Ls~-n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~  909 (1153)
T PLN03210        847 NISDLNLSR-TGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEA  909 (1153)
T ss_pred             ccCEeECCC-CCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccc
Confidence            566666665 4666777778889999999999999999987642 2689999999999888643

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.88  E-value=3.1e-22  Score=206.19  Aligned_cols=105  Identities=25%  Similarity=0.242  Sum_probs=49.3

Q ss_pred             CcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEE
Q 018478          101 PSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVI  180 (355)
Q Consensus       101 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l  180 (355)
                      ++|+.|++++|.....+|..++++++|++|++++|.....+|..++++++|+.|++++|.....+|..+..+++|+.|++
T Consensus       164 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  243 (968)
T PLN00113        164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDL  243 (968)
T ss_pred             CCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEEC
Confidence            44555555554422334444444555555555554433344444445555555555544332334444444455555555


Q ss_pred             ccccCcCcccccccCCCCCceEEEe
Q 018478          181 RWCGRLEALPKGLHNLKSLQKLTIG  205 (355)
Q Consensus       181 ~~~~~~~~~p~~l~~~~~L~~L~l~  205 (355)
                      ++|.....+|..++.+++|++|+++
T Consensus       244 ~~n~l~~~~p~~l~~l~~L~~L~L~  268 (968)
T PLN00113        244 VYNNLTGPIPSSLGNLKNLQYLFLY  268 (968)
T ss_pred             cCceeccccChhHhCCCCCCEEECc
Confidence            5443333444444455555555444

>PLN03210 Resistant to P

Probab=99.88  E-value=8.8e-22  Score=204.02  Aligned_cols=287  Identities=21%  Similarity=0.277  Sum_probs=188.3

Q ss_pred             CCCccEEeecccccCcccccCccCCCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccc
Q 018478            5 NSSLEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSK   84 (355)
Q Consensus         5 ~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~   84 (355)
                      +++|++|+++++..++.+|.....++|++|++.+|..+..+|..+            ..+++|+.|++++|..++.+   
T Consensus       633 l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si------------~~L~~L~~L~L~~c~~L~~L---  697 (1153)
T PLN03210        633 LTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSI------------QYLNKLEDLDMSRCENLEIL---  697 (1153)
T ss_pred             CCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhh------------hccCCCCEEeCCCCCCcCcc---
Confidence            455555555555445555443334555555555555555554432            33556666666666655555   


Q ss_pred             cccchhccccccCCCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCC--
Q 018478           85 NELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNL--  162 (355)
Q Consensus        85 n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l--  162 (355)
                                |....+++|+.|++++|..+..+|..   ..+|++|++.++. +..+|..+ .+++|+.|.+.++...  
T Consensus       698 ----------p~~i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~-i~~lP~~~-~l~~L~~L~l~~~~~~~l  762 (1153)
T PLN03210        698 ----------PTGINLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETA-IEEFPSNL-RLENLDELILCEMKSEKL  762 (1153)
T ss_pred             ----------CCcCCCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCc-cccccccc-cccccccccccccchhhc
Confidence                      54434456666666666555555432   3456666666655 45555433 3556666666543210  


Q ss_pred             ----cCCC-CCCCCCCCcceEEEccccCcCcccccccCCCCCceEEEe----ecCcCCCCCCCCccEEEecCCcchhhhh
Q 018478          163 ----ESFP-EGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIG----KGGLEEDGLPTNLHSLDIRGNMEIWKSM  233 (355)
Q Consensus       163 ----~~~~-~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~----~~~i~~~~~~~~L~~L~l~~~~~~~~~~  233 (355)
                          ..++ ......++|+.|++++|..+..+|..++++++|+.|+++    ...+|....+++|+.|++++|..+...+
T Consensus       763 ~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p  842 (1153)
T PLN03210        763 WERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFP  842 (1153)
T ss_pred             cccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccc
Confidence                0011 111224689999999988888899999999999999997    3456655567899999999998765443


Q ss_pred             hhhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEeeCCCCCC
Q 018478          234 IEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKL  313 (355)
Q Consensus       234 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l  313 (355)
                      .       ..++|+.|++++  +.++.+|...       ..+++|+.|++++|++++.+|..+..+++|+.+++++|.++
T Consensus       843 ~-------~~~nL~~L~Ls~--n~i~~iP~si-------~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L  906 (1153)
T PLN03210        843 D-------ISTNISDLNLSR--TGIEEVPWWI-------EKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGAL  906 (1153)
T ss_pred             c-------cccccCEeECCC--CCCccChHHH-------hcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccc
Confidence            2       236899999998  6788888766       57889999999999999999988889999999999999988


Q ss_pred             cccCCCCC--------------CCCccEEEecCCchhh
Q 018478          314 KYFPEKGL--------------PSSLLELWIGGCPLIE  337 (355)
Q Consensus       314 ~~~~~~~~--------------~~~L~~L~l~~c~~l~  337 (355)
                      +.++....              .+....+.+.+|.++.
T Consensus       907 ~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~  944 (1153)
T PLN03210        907 TEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLD  944 (1153)
T ss_pred             ccccCCCCchhhhhhcccccccCCchhccccccccCCC
Confidence            87654221              2233445667776654

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.88  E-value=8.2e-22  Score=203.09  Aligned_cols=290  Identities=17%  Similarity=0.138  Sum_probs=209.3

Q ss_pred             CCCccEEeecccccCcccccCccC--CCcceEecccCcccc-ccccccCcCCCCCCCccccccccccEEEecCCCccchh
Q 018478            5 NSSLEILEIWSCRSLTYLAAVQLP--RSLKRLDIQCCSNIR-TLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSI   81 (355)
Q Consensus         5 ~~~L~~L~l~~~~~l~~l~~~~~~--~~L~~L~l~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~   81 (355)
                      ...++.|+++++ .++...+..+.  ++|+.|+++++. +. .+|...           +..+++|++|+++++.....+
T Consensus        68 ~~~v~~L~L~~~-~i~~~~~~~~~~l~~L~~L~Ls~n~-~~~~ip~~~-----------~~~l~~L~~L~Ls~n~l~~~~  134 (968)
T PLN00113         68 SSRVVSIDLSGK-NISGKISSAIFRLPYIQTINLSNNQ-LSGPIPDDI-----------FTTSSSLRYLNLSNNNFTGSI  134 (968)
T ss_pred             CCcEEEEEecCC-CccccCChHHhCCCCCCEEECCCCc-cCCcCChHH-----------hccCCCCCEEECcCCcccccc
Confidence            456888888754 34333222232  889999999854 43 566554           345889999999886433333


Q ss_pred             ccccccchhccccccCCCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCC
Q 018478           82 FSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGN  161 (355)
Q Consensus        82 ~~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  161 (355)
                                   +. ..+++|++|++++|.....+|..++.+++|++|++++|.....+|..++++++|+.|++++|..
T Consensus       135 -------------p~-~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l  200 (968)
T PLN00113        135 -------------PR-GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQL  200 (968)
T ss_pred             -------------Cc-cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCC
Confidence                         43 3457999999999984457888899999999999999986678888999999999999999866


Q ss_pred             CcCCCCCCCCCCCcceEEEccccCcCcccccccCCCCCceEEEeecCc----C-CCCCCCCccEEEecCCcchhhhhhhh
Q 018478          162 LESFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGL----E-EDGLPTNLHSLDIRGNMEIWKSMIEW  236 (355)
Q Consensus       162 l~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i----~-~~~~~~~L~~L~l~~~~~~~~~~~~~  236 (355)
                      ...+|..+..+++|+.|++++|.....+|..++.+++|++|+++.+.+    + ..+.+++|+.|++++|......+.. 
T Consensus       201 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-  279 (968)
T PLN00113        201 VGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS-  279 (968)
T ss_pred             cCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchh-
Confidence            667888888999999999999877678889999999999999984433    3 2456789999999988754433332 


Q ss_pred             cccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEeeCCCCCCc-c
Q 018478          237 GQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLK-Y  315 (355)
Q Consensus       237 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~-~  315 (355)
                         +..+++|++|++++ |.....+|..+       ..+++|+.|+++++.....+|..+..+++|+.|++++| ++. .
T Consensus       280 ---l~~l~~L~~L~Ls~-n~l~~~~p~~~-------~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~  347 (968)
T PLN00113        280 ---IFSLQKLISLDLSD-NSLSGEIPELV-------IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSN-KFSGE  347 (968)
T ss_pred             ---HhhccCcCEEECcC-CeeccCCChhH-------cCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCC-CCcCc
Confidence               56788888898887 44444555544       45677888888775444456666677777777777777 343 3


Q ss_pred             cCCC-CCCCCccEEEecCCc
Q 018478          316 FPEK-GLPSSLLELWIGGCP  334 (355)
Q Consensus       316 ~~~~-~~~~~L~~L~l~~c~  334 (355)
                      +|.. +-.++|+.|++.+|.
T Consensus       348 ~p~~l~~~~~L~~L~Ls~n~  367 (968)
T PLN00113        348 IPKNLGKHNNLTVLDLSTNN  367 (968)
T ss_pred             CChHHhCCCCCcEEECCCCe
Confidence            3321 124666666666553

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.85  E-value=2.6e-22  Score=182.24  Aligned_cols=216  Identities=19%  Similarity=0.256  Sum_probs=137.9

Q ss_pred             cccEEEEccCcchhchh-hhccCCCCCcEEEeeccCCcCcc-cccccCCCCCceEeccccCCCcCCCC-CCCCCCCcceE
Q 018478          102 SLKSLRVQGCSKLESIA-ETLDNSTSLETIHIFYCENMKIL-PSGLHNLRQLQEISIEGCGNLESFPE-GGLPCAKLKEV  178 (355)
Q Consensus       102 ~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L  178 (355)
                      +|..|.++.|. ++.+| ..|.++++|+.|++..|. +... --+|..+++|+.|.+..| .+..+.+ .|..|.++++|
T Consensus       198 sL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL~Sl~nlklqrN-~I~kL~DG~Fy~l~kme~l  274 (873)
T KOG4194|consen  198 SLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNR-IRIVEGLTFQGLPSLQNLKLQRN-DISKLDDGAFYGLEKMEHL  274 (873)
T ss_pred             hheeeecccCc-ccccCHHHhhhcchhhhhhccccc-eeeehhhhhcCchhhhhhhhhhc-CcccccCcceeeeccccee
Confidence            56666666665 55554 445557777777777665 4433 235666777777777665 4555554 34557788888


Q ss_pred             EEccccCcCcccccccCCCCCceEEEeecCcCC-----CCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecc
Q 018478          179 VIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEE-----DGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEG  253 (355)
Q Consensus       179 ~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~-----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  253 (355)
                      ++..|.....-...+.++++|+.|+++.+.|..     ..+.++|+.|+++.|.... ..+. .  +..+..|++|+++.
T Consensus       275 ~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~-l~~~-s--f~~L~~Le~LnLs~  350 (873)
T KOG4194|consen  275 NLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITR-LDEG-S--FRVLSQLEELNLSH  350 (873)
T ss_pred             ecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccccccc-CChh-H--HHHHHHhhhhcccc
Confidence            888755433333466788888888888444432     3467888888888876433 3322 1  56677777777777


Q ss_pred             cCCcccccCccccccCCCCCCCCccceEEeccCCCcc----cccccCCCCCCccEEeeCCCCCCcccCCCCC--CCCccE
Q 018478          254 CDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLE----RLSSSIVDLQNLTSLYLVGCPKLKYFPEKGL--PSSLLE  327 (355)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~----~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~--~~~L~~  327 (355)
                        +++..+.+..+      ....+|+.|++++ +.+.    .-...+.++++|+.|.+.+| ++++|+...+  ++.|++
T Consensus       351 --Nsi~~l~e~af------~~lssL~~LdLr~-N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~  420 (873)
T KOG4194|consen  351 --NSIDHLAEGAF------VGLSSLHKLDLRS-NELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEH  420 (873)
T ss_pred             --cchHHHHhhHH------HHhhhhhhhcCcC-CeEEEEEecchhhhccchhhhheeecCc-eeeecchhhhccCcccce
Confidence              66666665443      4566777777776 3332    22233566777777777777 7777776654  677777


Q ss_pred             EEecCCc
Q 018478          328 LWIGGCP  334 (355)
Q Consensus       328 L~l~~c~  334 (355)
                      |++.+++
T Consensus       421 LdL~~Na  427 (873)
T KOG4194|consen  421 LDLGDNA  427 (873)
T ss_pred             ecCCCCc
Confidence            7777665

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.81  E-value=3.8e-21  Score=174.67  Aligned_cols=278  Identities=17%  Similarity=0.244  Sum_probs=171.7

Q ss_pred             cEEeecccccCcccccCccC--CCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccc
Q 018478            9 EILEIWSCRSLTYLAAVQLP--RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNE   86 (355)
Q Consensus         9 ~~L~l~~~~~l~~l~~~~~~--~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~   86 (355)
                      +.|++++ +++.++....|.  |+|+++.+.+ +.++.+|...+.            ..+|+.|++.+. .+..+     
T Consensus        81 ~~Ldlsn-Nkl~~id~~~f~nl~nLq~v~l~~-N~Lt~IP~f~~~------------sghl~~L~L~~N-~I~sv-----  140 (873)
T KOG4194|consen   81 QTLDLSN-NKLSHIDFEFFYNLPNLQEVNLNK-NELTRIPRFGHE------------SGHLEKLDLRHN-LISSV-----  140 (873)
T ss_pred             eeeeccc-cccccCcHHHHhcCCcceeeeecc-chhhhccccccc------------ccceeEEeeecc-ccccc-----
Confidence            3455553 345444433332  5555555555 445555544321            334555555542 22222     


Q ss_pred             cchhccccccC--CCCCcccEEEEccCcchhchh-hhccCCCCCcEEEeeccCCcCcc-cccccCCCCCceEeccccCCC
Q 018478           87 LSATLESLEVG--NLPPSLKSLRVQGCSKLESIA-ETLDNSTSLETIHIFYCENMKIL-PSGLHNLRQLQEISIEGCGNL  162 (355)
Q Consensus        87 ~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l  162 (355)
                              ...  ..++.|+.||++.|. +..+| +.+..-.++++|++++|. ++.+ ...|..+.+|..|.++.| .+
T Consensus       141 --------~se~L~~l~alrslDLSrN~-is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrN-ri  209 (873)
T KOG4194|consen  141 --------TSEELSALPALRSLDLSRNL-ISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRN-RI  209 (873)
T ss_pred             --------cHHHHHhHhhhhhhhhhhch-hhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeecccC-cc
Confidence                    111  344677777777766 65555 344445678888888877 4443 345666778888888876 66


Q ss_pred             cCCCCCCCC-CCCcceEEEccccCcCcc-cccccCCCCCceEEEeecCcC---CCC--CCCCccEEEecCCcchhhhhhh
Q 018478          163 ESFPEGGLP-CAKLKEVVIRWCGRLEAL-PKGLHNLKSLQKLTIGKGGLE---EDG--LPTNLHSLDIRGNMEIWKSMIE  235 (355)
Q Consensus       163 ~~~~~~~~~-~~~L~~L~l~~~~~~~~~-p~~l~~~~~L~~L~l~~~~i~---~~~--~~~~L~~L~l~~~~~~~~~~~~  235 (355)
                      +.+|...++ +++|+.|++..| .++.+ ...|.++++|+.|.+..+.|.   +..  .+.++++|++..|+.. ....-
T Consensus       210 ttLp~r~Fk~L~~L~~LdLnrN-~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~-~vn~g  287 (873)
T KOG4194|consen  210 TTLPQRSFKRLPKLESLDLNRN-RIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ-AVNEG  287 (873)
T ss_pred             cccCHHHhhhcchhhhhhcccc-ceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh-hhhcc
Confidence            777754444 788888888774 45444 246778888888877744443   322  4578888888887633 33333


Q ss_pred             hcccCCCCCccceeEecccCCcccccCc-cccccCCCCCCCCccceEEeccCCCcccccc-cCCCCCCccEEeeCCCCCC
Q 018478          236 WGQGFHRFSSLRELRIEGCDDDMVSFPP-EDIRMGTTLPLPTSLTSLAIFSFPNLERLSS-SIVDLQNLTSLYLVGCPKL  313 (355)
Q Consensus       236 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l  313 (355)
                      |   +-++++|++|++++  +.+..+.. .+       .+.++|+.|++++ +.++.+++ .+..+.+|++|.++.| ++
T Consensus       288 ~---lfgLt~L~~L~lS~--NaI~rih~d~W-------sftqkL~~LdLs~-N~i~~l~~~sf~~L~~Le~LnLs~N-si  353 (873)
T KOG4194|consen  288 W---LFGLTSLEQLDLSY--NAIQRIHIDSW-------SFTQKLKELDLSS-NRITRLDEGSFRVLSQLEELNLSHN-SI  353 (873)
T ss_pred             c---ccccchhhhhccch--hhhheeecchh-------hhcccceeEeccc-cccccCChhHHHHHHHhhhhccccc-ch
Confidence            4   66788888888887  66666643 33       4667888888887 67777765 3466777777777776 67


Q ss_pred             cccCCCCC--CCCccEEEecCC
Q 018478          314 KYFPEKGL--PSSLLELWIGGC  333 (355)
Q Consensus       314 ~~~~~~~~--~~~L~~L~l~~c  333 (355)
                      +++.+..+  +.+|++||++++
T Consensus       354 ~~l~e~af~~lssL~~LdLr~N  375 (873)
T KOG4194|consen  354 DHLAEGAFVGLSSLHKLDLRSN  375 (873)
T ss_pred             HHHHhhHHHHhhhhhhhcCcCC
Confidence            77666544  567777776654

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.75  E-value=2.3e-20  Score=171.08  Aligned_cols=281  Identities=17%  Similarity=0.178  Sum_probs=196.3

Q ss_pred             CCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccccchhccccccC--CCCCcccEE
Q 018478           29 RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEVG--NLPPSLKSL  106 (355)
Q Consensus        29 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~--~~~~~L~~L  106 (355)
                      ..|+.|+++. ++++++|...            ...+++-.|++++. +++.+             |..  ..+..|-.|
T Consensus       103 ~dLt~lDLSh-NqL~EvP~~L------------E~AKn~iVLNLS~N-~IetI-------------Pn~lfinLtDLLfL  155 (1255)
T KOG0444|consen  103 KDLTILDLSH-NQLREVPTNL------------EYAKNSIVLNLSYN-NIETI-------------PNSLFINLTDLLFL  155 (1255)
T ss_pred             ccceeeecch-hhhhhcchhh------------hhhcCcEEEEcccC-ccccC-------------CchHHHhhHhHhhh
Confidence            5566666666 5566666543            22555666666652 44444             322  233567778


Q ss_pred             EEccCcchhchhhhccCCCCCcEEEeeccCCcCcc-cccccCCCCCceEeccccC-CCcCCCCCCCCCCCcceEEEcccc
Q 018478          107 RVQGCSKLESIAETLDNSTSLETIHIFYCENMKIL-PSGLHNLRQLQEISIEGCG-NLESFPEGGLPCAKLKEVVIRWCG  184 (355)
Q Consensus       107 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~-~l~~~~~~~~~~~~L~~L~l~~~~  184 (355)
                      |+++|. +..+|+-+.++.+|++|.+++|+ +... -..+..+++|+.|.+++.+ .+..+|..+-.+.||..++++. +
T Consensus       156 DLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N  232 (1255)
T KOG0444|consen  156 DLSNNR-LEMLPPQIRRLSMLQTLKLSNNP-LNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-N  232 (1255)
T ss_pred             ccccch-hhhcCHHHHHHhhhhhhhcCCCh-hhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc-c
Confidence            888877 77888878888888888888887 4322 1223346667777776642 2445677777788888888887 4


Q ss_pred             CcCcccccccCCCCCceEEEeecCcCCCC----CCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccc
Q 018478          185 RLEALPKGLHNLKSLQKLTIGKGGLEEDG----LPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVS  260 (355)
Q Consensus       185 ~~~~~p~~l~~~~~L~~L~l~~~~i~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  260 (355)
                      .+..+|+.+-.+++|+.|+++.+.++...    .-.+|++|+++.|. ++..+..    +..+++|+.|.+.++-...+-
T Consensus       233 ~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~a----vcKL~kL~kLy~n~NkL~FeG  307 (1255)
T KOG0444|consen  233 NLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQ-LTVLPDA----VCKLTKLTKLYANNNKLTFEG  307 (1255)
T ss_pred             CCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccch-hccchHH----HhhhHHHHHHHhccCcccccC
Confidence            67778888888888888888877666543    34688888888876 3334432    567888999988873345677


Q ss_pred             cCccccccCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEeeCCCCCCcccCCCC-CCCCccEEEecCCchhhHh
Q 018478          261 FPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPEKG-LPSSLLELWIGGCPLIEEK  339 (355)
Q Consensus       261 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~L~~L~l~~c~~l~~~  339 (355)
                      +|..+       ..+..|+.+...+ +.++-+|+.++.|+.|+.|.+..| ++-.+|... +++-|+.||++.+|++.-.
T Consensus       308 iPSGI-------GKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~N-rLiTLPeaIHlL~~l~vLDlreNpnLVMP  378 (1255)
T KOG0444|consen  308 IPSGI-------GKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDHN-RLITLPEAIHLLPDLKVLDLRENPNLVMP  378 (1255)
T ss_pred             Cccch-------hhhhhhHHHHhhc-cccccCchhhhhhHHHHHhccccc-ceeechhhhhhcCCcceeeccCCcCccCC
Confidence            88777       4667888888887 899999999999999999999887 777888754 4899999999999987653


Q ss_pred             hhcc---CCcccccccc
Q 018478          340 CRKD---GGQYFYSLFY  353 (355)
Q Consensus       340 ~~~~---~~~~~~~i~~  353 (355)
                      -...   ...+|+.|-+
T Consensus       379 PKP~da~~~lefYNIDF  395 (1255)
T KOG0444|consen  379 PKPNDARKKLEFYNIDF  395 (1255)
T ss_pred             CCcchhhhcceeeecce
Confidence            2221   2345665543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.69  E-value=6.1e-16  Score=150.98  Aligned_cols=129  Identities=28%  Similarity=0.324  Sum_probs=71.8

Q ss_pred             ccEEeecccccCcccccCccCCCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhcccccc
Q 018478            8 LEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNEL   87 (355)
Q Consensus         8 L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~   87 (355)
                      -..|+++++ .++.+|. .++++|+.|.+.+ ++++.+|..               .++|++|+++++ .++.+      
T Consensus       203 ~~~LdLs~~-~LtsLP~-~l~~~L~~L~L~~-N~Lt~LP~l---------------p~~Lk~LdLs~N-~LtsL------  257 (788)
T PRK15387        203 NAVLNVGES-GLTTLPD-CLPAHITTLVIPD-NNLTSLPAL---------------PPELRTLEVSGN-QLTSL------  257 (788)
T ss_pred             CcEEEcCCC-CCCcCCc-chhcCCCEEEccC-CcCCCCCCC---------------CCCCcEEEecCC-ccCcc------
Confidence            456777654 6666664 4456778888777 557766642               566777777764 55555      


Q ss_pred             chhccccccCCCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCC
Q 018478           88 SATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPE  167 (355)
Q Consensus        88 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~  167 (355)
                             |.  .+++|+.|++++|. +..+|..   ..+|+.|++++|. ++.+|..   +++|+.|++++| .+..+|.
T Consensus       258 -------P~--lp~sL~~L~Ls~N~-L~~Lp~l---p~~L~~L~Ls~N~-Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~  319 (788)
T PRK15387        258 -------PV--LPPGLLELSIFSNP-LTHLPAL---PSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDN-QLASLPA  319 (788)
T ss_pred             -------cC--cccccceeeccCCc-hhhhhhc---hhhcCEEECcCCc-ccccccc---ccccceeECCCC-ccccCCC
Confidence                   42  33566666666665 5555542   2455556665554 4444432   345666666554 4444443


Q ss_pred             CCCCCCCcceEEEcc
Q 018478          168 GGLPCAKLKEVVIRW  182 (355)
Q Consensus       168 ~~~~~~~L~~L~l~~  182 (355)
                      ..   .+|+.|++++
T Consensus       320 lp---~~L~~L~Ls~  331 (788)
T PRK15387        320 LP---SELCKLWAYN  331 (788)
T ss_pred             Cc---cccccccccc
Confidence            11   2344444444

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.66  E-value=3.3e-16  Score=153.51  Aligned_cols=243  Identities=21%  Similarity=0.310  Sum_probs=178.4

Q ss_pred             CCccEEeecccccCcccccCccCCCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhcccc
Q 018478            6 SSLEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKN   85 (355)
Q Consensus         6 ~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n   85 (355)
                      .+.+.|.+.+. +++.+| ..++++|+.|++++ +.++.+|...              .++|+.|+++++ .++.+    
T Consensus       178 ~~~~~L~L~~~-~LtsLP-~~Ip~~L~~L~Ls~-N~LtsLP~~l--------------~~nL~~L~Ls~N-~LtsL----  235 (754)
T PRK15370        178 NNKTELRLKIL-GLTTIP-ACIPEQITTLILDN-NELKSLPENL--------------QGNIKTLYANSN-QLTSI----  235 (754)
T ss_pred             cCceEEEeCCC-CcCcCC-cccccCCcEEEecC-CCCCcCChhh--------------ccCCCEEECCCC-ccccC----
Confidence            35788889864 677777 34678999999998 5788888766              568999999875 56666    


Q ss_pred             ccchhccccccCCCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCC
Q 018478           86 ELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESF  165 (355)
Q Consensus        86 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~  165 (355)
                               |. ..+++|+.|++++|. +..+|..+.  .+|+.|++++|. +..+|..+.  ++|+.|++++| .++.+
T Consensus       236 ---------P~-~l~~~L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N-~Lt~L  298 (754)
T PRK15370        236 ---------PA-TLPDTIQEMELSINR-ITELPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDN-SIRTL  298 (754)
T ss_pred             ---------Ch-hhhccccEEECcCCc-cCcCChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCC-ccccC
Confidence                     54 344689999999988 778887663  589999999876 777887653  58999999987 67778


Q ss_pred             CCCCCCCCCcceEEEccccCcCcccccccCCCCCceEEEeecCcCCC--CCCCCccEEEecCCcchhhhhhhhcccCCCC
Q 018478          166 PEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEED--GLPTNLHSLDIRGNMEIWKSMIEWGQGFHRF  243 (355)
Q Consensus       166 ~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l  243 (355)
                      |..+.  ++|+.|++++| .++.+|..+.  ++|+.|+++.+.+...  ..+++|+.|++++|.. +.++..+      .
T Consensus       299 P~~lp--~sL~~L~Ls~N-~Lt~LP~~l~--~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~L-~~LP~~l------p  366 (754)
T PRK15370        299 PAHLP--SGITHLNVQSN-SLTALPETLP--PGLKTLEAGENALTSLPASLPPELQVLDVSKNQI-TVLPETL------P  366 (754)
T ss_pred             cccch--hhHHHHHhcCC-ccccCCcccc--ccceeccccCCccccCChhhcCcccEEECCCCCC-CcCChhh------c
Confidence            76554  37899999985 4566665443  5888888884443322  3457899999998863 3344322      2


Q ss_pred             CccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccccccC----CCCCCccEEeeCCCC
Q 018478          244 SSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSI----VDLQNLTSLYLVGCP  311 (355)
Q Consensus       244 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~----~~~~~L~~L~l~~~~  311 (355)
                      ++|++|++++  +.+..+|...         +.+|+.|++++ +.+..+|..+    ..++++..|++.+|+
T Consensus       367 ~~L~~LdLs~--N~Lt~LP~~l---------~~sL~~LdLs~-N~L~~LP~sl~~~~~~~~~l~~L~L~~Np  426 (754)
T PRK15370        367 PTITTLDVSR--NALTNLPENL---------PAALQIMQASR-NNLVRLPESLPHFRGEGPQPTRIIVEYNP  426 (754)
T ss_pred             CCcCEEECCC--CcCCCCCHhH---------HHHHHHHhhcc-CCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence            6889999998  5677787644         35788899998 6778777654    335778888888874

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.64  E-value=1.8e-15  Score=147.74  Aligned_cols=236  Identities=29%  Similarity=0.365  Sum_probs=177.6

Q ss_pred             CCccEEeecccccCcccccCccCCCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhcccc
Q 018478            6 SSLEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKN   85 (355)
Q Consensus         6 ~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n   85 (355)
                      ++|+.|.+.+ ++++.+|.  .+++|++|++++ ++++.+|..               .++|+.|++.++ .++.+    
T Consensus       222 ~~L~~L~L~~-N~Lt~LP~--lp~~Lk~LdLs~-N~LtsLP~l---------------p~sL~~L~Ls~N-~L~~L----  277 (788)
T PRK15387        222 AHITTLVIPD-NNLTSLPA--LPPELRTLEVSG-NQLTSLPVL---------------PPGLLELSIFSN-PLTHL----  277 (788)
T ss_pred             cCCCEEEccC-CcCCCCCC--CCCCCcEEEecC-CccCcccCc---------------ccccceeeccCC-chhhh----
Confidence            3689999986 57888774  469999999999 678888753               568999999875 45665    


Q ss_pred             ccchhccccccCCCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCC
Q 018478           86 ELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESF  165 (355)
Q Consensus        86 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~  165 (355)
                               +.  .+.+|+.|++++|. ++.+|..   +++|+.|++++|. +..+|..   ..+|+.|++++| .+..+
T Consensus       278 ---------p~--lp~~L~~L~Ls~N~-Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~l---p~~L~~L~Ls~N-~L~~L  337 (788)
T PRK15387        278 ---------PA--LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQ-LASLPAL---PSELCKLWAYNN-QLTSL  337 (788)
T ss_pred             ---------hh--chhhcCEEECcCCc-ccccccc---ccccceeECCCCc-cccCCCC---cccccccccccC-ccccc
Confidence                     43  45789999999987 7777753   5789999999986 6667653   346888889886 67777


Q ss_pred             CCCCCCCCCcceEEEccccCcCcccccccCCCCCceEEEeecCcCCC-CCCCCccEEEecCCcchhhhhhhhcccCCCCC
Q 018478          166 PEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEED-GLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFS  244 (355)
Q Consensus       166 ~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~  244 (355)
                      |..   ..+|+.|++++| .++.+|..   ..+|+.|+++.+.+... ..+.+|+.|++++|.. +.++.       ..+
T Consensus       338 P~l---p~~Lq~LdLS~N-~Ls~LP~l---p~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~L-t~LP~-------l~s  402 (788)
T PRK15387        338 PTL---PSGLQELSVSDN-QLASLPTL---PSELYKLWAYNNRLTSLPALPSGLKELIVSGNRL-TSLPV-------LPS  402 (788)
T ss_pred             ccc---ccccceEecCCC-ccCCCCCC---CcccceehhhccccccCcccccccceEEecCCcc-cCCCC-------ccc
Confidence            752   248999999985 56677753   34677787774433322 1346899999999863 33332       136


Q ss_pred             ccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEeeCCCCCCc
Q 018478          245 SLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLK  314 (355)
Q Consensus       245 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~  314 (355)
                      +|+.|++++  +.+..+|.          .+.+|+.|++++ +.++.+|..+..+++|+.|++++| .++
T Consensus       403 ~L~~LdLS~--N~LssIP~----------l~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N-~Ls  458 (788)
T PRK15387        403 ELKELMVSG--NRLTSLPM----------LPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGN-PLS  458 (788)
T ss_pred             CCCEEEccC--CcCCCCCc----------chhhhhhhhhcc-CcccccChHHhhccCCCeEECCCC-CCC
Confidence            899999998  67777874          346789999998 789999998999999999999998 454

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.62  E-value=9.1e-18  Score=154.21  Aligned_cols=266  Identities=19%  Similarity=0.205  Sum_probs=142.7

Q ss_pred             CCCCccEEeecccccCcccccCc-cCCCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhc
Q 018478            4 TNSSLEILEIWSCRSLTYLAAVQ-LPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIF   82 (355)
Q Consensus         4 ~~~~L~~L~l~~~~~l~~l~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~   82 (355)
                      .+..|+.|+++. +.+++.|... .++++-+|++++ ++++.+|...           |.++..|-+|++++. .++.+ 
T Consensus       101 ~l~dLt~lDLSh-NqL~EvP~~LE~AKn~iVLNLS~-N~IetIPn~l-----------finLtDLLfLDLS~N-rLe~L-  165 (1255)
T KOG0444|consen  101 RLKDLTILDLSH-NQLREVPTNLEYAKNSIVLNLSY-NNIETIPNSL-----------FINLTDLLFLDLSNN-RLEML-  165 (1255)
T ss_pred             ccccceeeecch-hhhhhcchhhhhhcCcEEEEccc-CccccCCchH-----------HHhhHhHhhhccccc-hhhhc-
Confidence            456677788874 5677666433 238888999998 7799999876           566777778888763 44444 


Q ss_pred             cccccchhccccccC-CCCCcccEEEEccCcchhchh-hhccCCCCCcEEEeeccCCc-CcccccccCCCCCceEecccc
Q 018478           83 SKNELSATLESLEVG-NLPPSLKSLRVQGCSKLESIA-ETLDNSTSLETIHIFYCENM-KILPSGLHNLRQLQEISIEGC  159 (355)
Q Consensus        83 ~~n~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~  159 (355)
                                  |.. ..+..|+.|++++|+ +..+- .-+..+++|+.|.+++..+. ..+|.++..+.+|..++++.|
T Consensus       166 ------------PPQ~RRL~~LqtL~Ls~NP-L~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N  232 (1255)
T KOG0444|consen  166 ------------PPQIRRLSMLQTLKLSNNP-LNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN  232 (1255)
T ss_pred             ------------CHHHHHHhhhhhhhcCCCh-hhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc
Confidence                        322 344566777777665 33210 11222444555555443322 224555555555555555553


Q ss_pred             CCCcCCCCCCCCCCCcceEEEccccCcCcccccccCCCCCceEEEeecCcCC----CCCCCCccEEEecCCcchhh-hhh
Q 018478          160 GNLESFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEE----DGLPTNLHSLDIRGNMEIWK-SMI  234 (355)
Q Consensus       160 ~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~----~~~~~~L~~L~l~~~~~~~~-~~~  234 (355)
                       ++..+|+....+++|+.|.+++| .++.+.-..+...+|++|+++.+.++.    .+-++.|+.|.+.+|...-+ +++
T Consensus       233 -~Lp~vPecly~l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPS  310 (1255)
T KOG0444|consen  233 -NLPIVPECLYKLRNLRRLNLSGN-KITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPS  310 (1255)
T ss_pred             -CCCcchHHHhhhhhhheeccCcC-ceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCcc
Confidence             45555555555555555555553 344443344444555555555222221    22334555554444432211 221


Q ss_pred             hhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEeeCCCCCC
Q 018478          235 EWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKL  313 (355)
Q Consensus       235 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l  313 (355)
                        +  ++.+.+|+.+..++  +.++-+|+.+       .....|+.|.+++ +.+..+|+.+.-++.|..|++..|+++
T Consensus       311 --G--IGKL~~Levf~aan--N~LElVPEgl-------cRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  311 --G--IGKLIQLEVFHAAN--NKLELVPEGL-------CRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             --c--hhhhhhhHHHHhhc--cccccCchhh-------hhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCc
Confidence              1  44555555555554  4455555544       3444555555554 455555555555555555555555544

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.61  E-value=3.2e-17  Score=156.51  Aligned_cols=218  Identities=21%  Similarity=0.237  Sum_probs=143.6

Q ss_pred             CCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcce
Q 018478           98 NLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKE  177 (355)
Q Consensus        98 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~  177 (355)
                      ..+.+|++++++.+. +..+|.+++.+++|+.+.+.+|. +..+|..+....+|+.+.+..| .++.+|+...+.+.|++
T Consensus       238 p~p~nl~~~dis~n~-l~~lp~wi~~~~nle~l~~n~N~-l~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~t  314 (1081)
T KOG0618|consen  238 PVPLNLQYLDISHNN-LSNLPEWIGACANLEALNANHNR-LVALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRT  314 (1081)
T ss_pred             cccccceeeecchhh-hhcchHHHHhcccceEecccchh-HHhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeee
Confidence            455789999999988 88899999999999999999988 6888888888899999999987 78888888888899999


Q ss_pred             EEEccccCcCcccccccC-CC-CCceEEEe------------------------ecCcC-----CCCCCCCccEEEecCC
Q 018478          178 VVIRWCGRLEALPKGLHN-LK-SLQKLTIG------------------------KGGLE-----EDGLPTNLHSLDIRGN  226 (355)
Q Consensus       178 L~l~~~~~~~~~p~~l~~-~~-~L~~L~l~------------------------~~~i~-----~~~~~~~L~~L~l~~~  226 (355)
                      |++..| .+.++|+.+.. .. +|+.|..+                        .+.+.     ......+|+.|+++.|
T Consensus       315 LdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN  393 (1081)
T KOG0618|consen  315 LDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYN  393 (1081)
T ss_pred             eeehhc-cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccc
Confidence            999984 56677763322 11 13333333                        22222     2223345555555554


Q ss_pred             cchhhhhhhhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEe
Q 018478          227 MEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLY  306 (355)
Q Consensus       227 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~  306 (355)
                      + +..++...   +.++..|++|+++|  +.++.+|...       .....|++|...+ +.+..+| .+..++.|+.+|
T Consensus       394 r-L~~fpas~---~~kle~LeeL~LSG--NkL~~Lp~tv-------a~~~~L~tL~ahs-N~l~~fP-e~~~l~qL~~lD  458 (1081)
T KOG0618|consen  394 R-LNSFPASK---LRKLEELEELNLSG--NKLTTLPDTV-------ANLGRLHTLRAHS-NQLLSFP-ELAQLPQLKVLD  458 (1081)
T ss_pred             c-cccCCHHH---HhchHHhHHHhccc--chhhhhhHHH-------HhhhhhHHHhhcC-Cceeech-hhhhcCcceEEe
Confidence            4 22222221   44555555555555  4555555444       3444555555554 4555555 456677788888


Q ss_pred             eCCCCCCcccCCC-CCC-CCccEEEecCCch
Q 018478          307 LVGCPKLKYFPEK-GLP-SSLLELWIGGCPL  335 (355)
Q Consensus       307 l~~~~~l~~~~~~-~~~-~~L~~L~l~~c~~  335 (355)
                      ++.| +++.+-.. ..+ ++|++||+.++.+
T Consensus       459 lS~N-~L~~~~l~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  459 LSCN-NLSEVTLPEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             cccc-hhhhhhhhhhCCCcccceeeccCCcc
Confidence            8766 67665432 235 7888888888774

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.61  E-value=1.9e-18  Score=150.89  Aligned_cols=190  Identities=26%  Similarity=0.323  Sum_probs=86.0

Q ss_pred             cccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEc
Q 018478          102 SLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIR  181 (355)
Q Consensus       102 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~  181 (355)
                      ++..++.+.|. +..+|+.++++..|+.++..+|. +.++|.++.++.++..+++.++ .++++|+....|+.|++++..
T Consensus       115 ~l~~l~~s~n~-~~el~~~i~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~m~~L~~ld~~  191 (565)
T KOG0472|consen  115 SLVKLDCSSNE-LKELPDSIGRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGN-KLKALPENHIAMKRLKHLDCN  191 (565)
T ss_pred             hhhhhhccccc-eeecCchHHHHhhhhhhhccccc-cccCchHHHHHHHHHHhhcccc-chhhCCHHHHHHHHHHhcccc
Confidence            34444444443 33344444444444444444433 4444444444444444444443 334444333334444444444


Q ss_pred             cccCcCcccccccCCCCCceEEEe---ecCcCCCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcc
Q 018478          182 WCGRLEALPKGLHNLKSLQKLTIG---KGGLEEDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDM  258 (355)
Q Consensus       182 ~~~~~~~~p~~l~~~~~L~~L~l~---~~~i~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  258 (355)
                      . +.++.+|..++.+.+|+.|++.   ...+|++..++.|.++.+..|. ++..+.+.   ...++++..||+..  +.+
T Consensus       192 ~-N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~-i~~lpae~---~~~L~~l~vLDLRd--Nkl  264 (565)
T KOG0472|consen  192 S-NLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQ-IEMLPAEH---LKHLNSLLVLDLRD--NKL  264 (565)
T ss_pred             h-hhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccH-HHhhHHHH---hcccccceeeeccc--ccc
Confidence            3 2344445555555555555444   2334444444444444444433 23233222   34445555555554  455


Q ss_pred             cccCccccccCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEeeCCC
Q 018478          259 VSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGC  310 (355)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~  310 (355)
                      +++|.+.       ..+.+|+.||+++ +.+..+|...+++ +|+.|.+.++
T Consensus       265 ke~Pde~-------clLrsL~rLDlSN-N~is~Lp~sLgnl-hL~~L~leGN  307 (565)
T KOG0472|consen  265 KEVPDEI-------CLLRSLERLDLSN-NDISSLPYSLGNL-HLKFLALEGN  307 (565)
T ss_pred             ccCchHH-------HHhhhhhhhcccC-CccccCCcccccc-eeeehhhcCC
Confidence            5555544       3444455555554 4555555444444 5555555554

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.60  E-value=1.6e-18  Score=151.29  Aligned_cols=259  Identities=25%  Similarity=0.290  Sum_probs=204.5

Q ss_pred             CCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccccchhccccc-cCCCCCcccEEE
Q 018478           29 RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELSATLESLE-VGNLPPSLKSLR  107 (355)
Q Consensus        29 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~-~~~~~~~L~~L~  107 (355)
                      ..|+++.+.. +.++.+..+.            .++..++.+.+.+. .+...             | ..+-...++.++
T Consensus        45 v~l~~lils~-N~l~~l~~dl------------~nL~~l~vl~~~~n-~l~~l-------------p~aig~l~~l~~l~   97 (565)
T KOG0472|consen   45 VDLQKLILSH-NDLEVLREDL------------KNLACLTVLNVHDN-KLSQL-------------PAAIGELEALKSLN   97 (565)
T ss_pred             cchhhhhhcc-CchhhccHhh------------hcccceeEEEeccc-hhhhC-------------CHHHHHHHHHHHhh
Confidence            4567777776 4455544432            34667778888774 34444             3 335556889999


Q ss_pred             EccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEccccCcC
Q 018478          108 VQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLE  187 (355)
Q Consensus       108 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~  187 (355)
                      .++|. +..+|+.++.+.+|..+++++|. +.+++++++.+..++.++..+| ++..+|..++.+.++..+++.+| .+.
T Consensus        98 vs~n~-ls~lp~~i~s~~~l~~l~~s~n~-~~el~~~i~~~~~l~dl~~~~N-~i~slp~~~~~~~~l~~l~~~~n-~l~  173 (565)
T KOG0472|consen   98 VSHNK-LSELPEQIGSLISLVKLDCSSNE-LKELPDSIGRLLDLEDLDATNN-QISSLPEDMVNLSKLSKLDLEGN-KLK  173 (565)
T ss_pred             cccch-HhhccHHHhhhhhhhhhhccccc-eeecCchHHHHhhhhhhhcccc-ccccCchHHHHHHHHHHhhcccc-chh
Confidence            99887 88889888899999999999877 7778888999999999998876 78889999999999999999995 456


Q ss_pred             cccccccCCCCCceEEEe---ecCcC-CCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCc
Q 018478          188 ALPKGLHNLKSLQKLTIG---KGGLE-EDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPP  263 (355)
Q Consensus       188 ~~p~~l~~~~~L~~L~l~---~~~i~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  263 (355)
                      .+|...-.++.|++++..   .+.+| +.+.+.+|+.|++..|. +...|.     |.++..|+++.++.  +.++.+|+
T Consensus       174 ~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nk-i~~lPe-----f~gcs~L~Elh~g~--N~i~~lpa  245 (565)
T KOG0472|consen  174 ALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNK-IRFLPE-----FPGCSLLKELHVGE--NQIEMLPA  245 (565)
T ss_pred             hCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcc-cccCCC-----CCccHHHHHHHhcc--cHHHhhHH
Confidence            666665559999999988   45555 46778899999999876 444553     78999999999998  88889998


Q ss_pred             cccccCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEeeCCCCCCcccCCC-CCCCCccEEEecCCch
Q 018478          264 EDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPEK-GLPSSLLELWIGGCPL  335 (355)
Q Consensus       264 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~c~~  335 (355)
                      +..      ..++++..||+.+ ++++.+|..+.-+++|..|+++++ .|+.+|.. |-+ .|+.|-+.+.|-
T Consensus       246 e~~------~~L~~l~vLDLRd-Nklke~Pde~clLrsL~rLDlSNN-~is~Lp~sLgnl-hL~~L~leGNPl  309 (565)
T KOG0472|consen  246 EHL------KHLNSLLVLDLRD-NKLKEVPDEICLLRSLERLDLSNN-DISSLPYSLGNL-HLKFLALEGNPL  309 (565)
T ss_pred             HHh------cccccceeeeccc-cccccCchHHHHhhhhhhhcccCC-ccccCCcccccc-eeeehhhcCCch
Confidence            773      4678999999999 899999999999999999999998 79988864 224 778888888884

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.59  E-value=3.9e-15  Score=146.04  Aligned_cols=243  Identities=18%  Similarity=0.254  Sum_probs=180.7

Q ss_pred             CCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccccchhccccccCCCCCcccEEEE
Q 018478           29 RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRV  108 (355)
Q Consensus        29 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~~~~~~L~~L~l  108 (355)
                      .+..+|++.+ ..+..+|..+              .++|+.|+++++ .++.+             +... +.+|+.|++
T Consensus       178 ~~~~~L~L~~-~~LtsLP~~I--------------p~~L~~L~Ls~N-~LtsL-------------P~~l-~~nL~~L~L  227 (754)
T PRK15370        178 NNKTELRLKI-LGLTTIPACI--------------PEQITTLILDNN-ELKSL-------------PENL-QGNIKTLYA  227 (754)
T ss_pred             cCceEEEeCC-CCcCcCCccc--------------ccCCcEEEecCC-CCCcC-------------Chhh-ccCCCEEEC
Confidence            4567888887 4577888765              567999999875 56666             5433 368999999


Q ss_pred             ccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEccccCcCc
Q 018478          109 QGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEA  188 (355)
Q Consensus       109 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~  188 (355)
                      ++|. ++.+|..+  ..+|+.|++++|. +..+|..+.  .+|+.|++++| .+..+|..+.  ++|+.|++++| .++.
T Consensus       228 s~N~-LtsLP~~l--~~~L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls~N-~Lt~  297 (754)
T PRK15370        228 NSNQ-LTSIPATL--PDTIQEMELSINR-ITELPERLP--SALQSLDLFHN-KISCLPENLP--EELRYLSVYDN-SIRT  297 (754)
T ss_pred             CCCc-cccCChhh--hccccEEECcCCc-cCcCChhHh--CCCCEEECcCC-ccCccccccC--CCCcEEECCCC-cccc
Confidence            9887 78888765  3589999999988 667877653  58999999976 7778887664  48999999996 5666


Q ss_pred             ccccccCCCCCceEEEeecCcCCC--CCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCcccc
Q 018478          189 LPKGLHNLKSLQKLTIGKGGLEED--GLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDI  266 (355)
Q Consensus       189 ~p~~l~~~~~L~~L~l~~~~i~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  266 (355)
                      +|..+.  ++|+.|+++.+.+...  ..+++|+.|++.+|. ++.++..+      .++|+.|++++  +.+..+|..  
T Consensus       298 LP~~lp--~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~-Lt~LP~~l------~~sL~~L~Ls~--N~L~~LP~~--  364 (754)
T PRK15370        298 LPAHLP--SGITHLNVQSNSLTALPETLPPGLKTLEAGENA-LTSLPASL------PPELQVLDVSK--NQITVLPET--  364 (754)
T ss_pred             Ccccch--hhHHHHHhcCCccccCCccccccceeccccCCc-cccCChhh------cCcccEEECCC--CCCCcCChh--
Confidence            776543  4788888885444432  345799999999986 34344322      26899999998  567777763  


Q ss_pred             ccCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEeeCCCCCCcccCCCC-----CCCCccEEEecCCch
Q 018478          267 RMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPEKG-----LPSSLLELWIGGCPL  335 (355)
Q Consensus       267 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-----~~~~L~~L~l~~c~~  335 (355)
                             .+++|+.|++++ +.++.+|..+.  ..|+.|++++| +++.+|...     ..+.+..+++.+++-
T Consensus       365 -------lp~~L~~LdLs~-N~Lt~LP~~l~--~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Npl  427 (754)
T PRK15370        365 -------LPPTITTLDVSR-NALTNLPENLP--AALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNPF  427 (754)
T ss_pred             -------hcCCcCEEECCC-CcCCCCCHhHH--HHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence                   357899999999 57888886432  47999999998 788887531     147889999998873

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.56  E-value=1.2e-16  Score=152.57  Aligned_cols=192  Identities=23%  Similarity=0.262  Sum_probs=118.7

Q ss_pred             cccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccC-CCC-CceEeccccCCCcCCCCC-CCCCCCcceE
Q 018478          102 SLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHN-LRQ-LQEISIEGCGNLESFPEG-GLPCAKLKEV  178 (355)
Q Consensus       102 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-l~~-L~~L~l~~~~~l~~~~~~-~~~~~~L~~L  178 (355)
                      +|+.|++..|. ++.+|+......+|++|++..|. +..+|+.+.. ... |+.++.+.+ .+...|.. -.....|+.|
T Consensus       288 ~L~~l~~~~ne-l~yip~~le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n-~l~~lp~~~e~~~~~Lq~L  364 (1081)
T KOG0618|consen  288 SLVSLSAAYNE-LEYIPPFLEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSN-KLSTLPSYEENNHAALQEL  364 (1081)
T ss_pred             hHHHHHhhhhh-hhhCCCcccccceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhhc-cccccccccchhhHHHHHH
Confidence            44444444444 44444444444455555554444 4444332111 111 333333332 23333321 1124567788


Q ss_pred             EEccccCcCcccccccCCCCCceEEEee---cCcCCC--CCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecc
Q 018478          179 VIRWCGRLEALPKGLHNLKSLQKLTIGK---GGLEED--GLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEG  253 (355)
Q Consensus       179 ~l~~~~~~~~~p~~l~~~~~L~~L~l~~---~~i~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  253 (355)
                      ++.+|......-..+..+++|+.|+++.   +.||+.  ...+.|+.|+++||. ++.++..    +.+++.|++|...+
T Consensus       365 ylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNk-L~~Lp~t----va~~~~L~tL~ahs  439 (1081)
T KOG0618|consen  365 YLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNK-LTTLPDT----VANLGRLHTLRAHS  439 (1081)
T ss_pred             HHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccch-hhhhhHH----HHhhhhhHHHhhcC
Confidence            8887654444445778899999999994   556654  345789999999987 4445543    56889999999987


Q ss_pred             cCCcccccCccccccCCCCCCCCccceEEeccCCCcccccccCCCC-CCccEEeeCCCCC
Q 018478          254 CDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDL-QNLTSLYLVGCPK  312 (355)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~-~~L~~L~l~~~~~  312 (355)
                        +++..+| +.       ...+.|+.+|++. ++++.+.....-- |+|++|++++|++
T Consensus       440 --N~l~~fP-e~-------~~l~qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  440 --NQLLSFP-EL-------AQLPQLKVLDLSC-NNLSEVTLPEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             --Cceeech-hh-------hhcCcceEEeccc-chhhhhhhhhhCCCcccceeeccCCcc
Confidence              7888999 45       4788999999996 7877543211222 8999999999976

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.45  E-value=9.4e-16  Score=133.87  Aligned_cols=277  Identities=17%  Similarity=0.143  Sum_probs=178.4

Q ss_pred             cCcccccCccCCCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccccchhccccccC
Q 018478           18 SLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEVG   97 (355)
Q Consensus        18 ~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~   97 (355)
                      +++++| ..+|+.-..+.|.. ++|+.+|...           |..+++|+.|+|++. +++.+             ...
T Consensus        57 GL~eVP-~~LP~~tveirLdq-N~I~~iP~~a-----------F~~l~~LRrLdLS~N-~Is~I-------------~p~  109 (498)
T KOG4237|consen   57 GLTEVP-ANLPPETVEIRLDQ-NQISSIPPGA-----------FKTLHRLRRLDLSKN-NISFI-------------APD  109 (498)
T ss_pred             CcccCc-ccCCCcceEEEecc-CCcccCChhh-----------ccchhhhceeccccc-chhhc-------------ChH
Confidence            566776 55677788888887 7788888876           777888888888874 55555             222


Q ss_pred             --CCCCcccEEEEccCcchhchhh-hccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCC-CCCCCC
Q 018478           98 --NLPPSLKSLRVQGCSKLESIAE-TLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPE-GGLPCA  173 (355)
Q Consensus        98 --~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~  173 (355)
                        ..+++|..|.+.++.+++.+|+ .|+++..|+.|.+.-|...-...+.+..+++|..|.+.++ .++.++. .+..+.
T Consensus       110 AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~  188 (498)
T KOG4237|consen  110 AFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLA  188 (498)
T ss_pred             hhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchh
Confidence              3335677777777555888874 4677888888877776633333466777888888888775 5666665 556677


Q ss_pred             CcceEEEccccCcCc------------ccccccCCCCCceEEEe---ecCcCCCCCCCCccEE--EecCCcchhhhhhhh
Q 018478          174 KLKEVVIRWCGRLEA------------LPKGLHNLKSLQKLTIG---KGGLEEDGLPTNLHSL--DIRGNMEIWKSMIEW  236 (355)
Q Consensus       174 ~L~~L~l~~~~~~~~------------~p~~l~~~~~L~~L~l~---~~~i~~~~~~~~L~~L--~l~~~~~~~~~~~~~  236 (355)
                      +++.+.+..|..+.+            .|..+++..-..-..+.   .+.+....+.-.++.+  .+.+....+...+..
T Consensus       189 ~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~  268 (498)
T KOG4237|consen  189 AIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAK  268 (498)
T ss_pred             ccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHH
Confidence            888888777653221            11111111111111111   2222221111112221  111111122222222


Q ss_pred             cccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccccc-cCCCCCCccEEeeCCCCCCcc
Q 018478          237 GQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSS-SIVDLQNLTSLYLVGCPKLKY  315 (355)
Q Consensus       237 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~  315 (355)
                      .  |+.+++|++|++++  +.++.+.+..+      .....+++|.+.. +.++.+.. .+.++..|+.|++.+| +|+.
T Consensus       269 c--f~~L~~L~~lnlsn--N~i~~i~~~aF------e~~a~l~eL~L~~-N~l~~v~~~~f~~ls~L~tL~L~~N-~it~  336 (498)
T KOG4237|consen  269 C--FKKLPNLRKLNLSN--NKITRIEDGAF------EGAAELQELYLTR-NKLEFVSSGMFQGLSGLKTLSLYDN-QITT  336 (498)
T ss_pred             H--HhhcccceEeccCC--Cccchhhhhhh------cchhhhhhhhcCc-chHHHHHHHhhhccccceeeeecCC-eeEE
Confidence            3  88999999999998  78888877665      6778999999998 78888765 4588999999999998 8999


Q ss_pred             cCCCCC--CCCccEEEecCCc
Q 018478          316 FPEKGL--PSSLLELWIGGCP  334 (355)
Q Consensus       316 ~~~~~~--~~~L~~L~l~~c~  334 (355)
                      +....+  ..+|.+|.+-.+|
T Consensus       337 ~~~~aF~~~~~l~~l~l~~Np  357 (498)
T KOG4237|consen  337 VAPGAFQTLFSLSTLNLLSNP  357 (498)
T ss_pred             EecccccccceeeeeehccCc
Confidence            877655  5788888887655

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.31  E-value=3.4e-14  Score=110.83  Aligned_cols=160  Identities=26%  Similarity=0.477  Sum_probs=101.4

Q ss_pred             CCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEccccCcCcccccccCCCCCceE
Q 018478          123 NSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKL  202 (355)
Q Consensus       123 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L  202 (355)
                      ++.+.+.|.+++|. +..+|..++.+.+|+.|+++++ .++.+|..+.++++|+.|.++. +++..+|.+|+.++.|++|
T Consensus        31 ~~s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levl  107 (264)
T KOG0617|consen   31 NMSNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVL  107 (264)
T ss_pred             chhhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhh
Confidence            35555666666655 5556666666666666666654 5666666666666666666665 3455666666666666666


Q ss_pred             EEeecCcCCCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEE
Q 018478          203 TIGKGGLEEDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLA  282 (355)
Q Consensus       203 ~l~~~~i~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  282 (355)
                      ++..+.+.+...+         +|             |-.++.|+.|+++.  +.++-+|.+.       ..+++|+.|.
T Consensus       108 dltynnl~e~~lp---------gn-------------ff~m~tlralyl~d--ndfe~lp~dv-------g~lt~lqil~  156 (264)
T KOG0617|consen  108 DLTYNNLNENSLP---------GN-------------FFYMTTLRALYLGD--NDFEILPPDV-------GKLTNLQILS  156 (264)
T ss_pred             hccccccccccCC---------cc-------------hhHHHHHHHHHhcC--CCcccCChhh-------hhhcceeEEe
Confidence            5543222221111         10             33445666677766  6667777766       4677888888


Q ss_pred             eccCCCcccccccCCCCCCccEEeeCCCCCCcccCC
Q 018478          283 IFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPE  318 (355)
Q Consensus       283 l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~  318 (355)
                      +.+ +.+-.+|..+..+.+|++|.++++ +++-+|+
T Consensus       157 lrd-ndll~lpkeig~lt~lrelhiqgn-rl~vlpp  190 (264)
T KOG0617|consen  157 LRD-NDLLSLPKEIGDLTRLRELHIQGN-RLTVLPP  190 (264)
T ss_pred             ecc-CchhhCcHHHHHHHHHHHHhcccc-eeeecCh
Confidence            887 677778877788888888888887 6776654

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.31  E-value=4.3e-14  Score=110.27  Aligned_cols=155  Identities=23%  Similarity=0.374  Sum_probs=99.1

Q ss_pred             CcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEE
Q 018478          101 PSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVI  180 (355)
Q Consensus       101 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l  180 (355)
                      ++.+.|.+++|. +..+|+.+..+.+|+.|++.+|. ++++|..+..+++|+.|++.-+ .+..+|.+|++.+.|+.|++
T Consensus        33 s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levldl  109 (264)
T KOG0617|consen   33 SNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVLDL  109 (264)
T ss_pred             hhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhhhc
Confidence            455666666665 66666666666777777766655 6666666666777777776654 55666677777777777777


Q ss_pred             ccccCc-CcccccccCCCCCceEEEeecC---cC-CCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccC
Q 018478          181 RWCGRL-EALPKGLHNLKSLQKLTIGKGG---LE-EDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCD  255 (355)
Q Consensus       181 ~~~~~~-~~~p~~l~~~~~L~~L~l~~~~---i~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  255 (355)
                      ..|+.- ..+|..|..++.|+.|+++.+.   +| +.+.+++|+.|.+.+|+.++ .+.+    ++.+++|++|.+.+  
T Consensus       110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~-lpke----ig~lt~lrelhiqg--  182 (264)
T KOG0617|consen  110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLS-LPKE----IGDLTRLRELHIQG--  182 (264)
T ss_pred             cccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhh-CcHH----HHHHHHHHHHhccc--
Confidence            665432 3456666666666666666222   22 23455666777777776544 3333    56778888888888  


Q ss_pred             CcccccCccc
Q 018478          256 DDMVSFPPED  265 (355)
Q Consensus       256 ~~~~~~~~~~  265 (355)
                      ++++.+|++.
T Consensus       183 nrl~vlppel  192 (264)
T KOG0617|consen  183 NRLTVLPPEL  192 (264)
T ss_pred             ceeeecChhh
Confidence            7777777655

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.28  E-value=7.6e-13  Score=119.47  Aligned_cols=113  Identities=19%  Similarity=0.186  Sum_probs=61.4

Q ss_pred             CCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccC-ccccccCCCCCCCCccceEEeccCCCcc----
Q 018478          216 TNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFP-PEDIRMGTTLPLPTSLTSLAIFSFPNLE----  290 (355)
Q Consensus       216 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~----  290 (355)
                      ++|+.|++++|.............+..+++|++|++++ | .+.... .......  ....+.|++|++++| .++    
T Consensus       193 ~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~-n-~l~~~~~~~l~~~~--~~~~~~L~~L~l~~n-~i~~~~~  267 (319)
T cd00116         193 CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGD-N-NLTDAGAAALASAL--LSPNISLLTLSLSCN-DITDDGA  267 (319)
T ss_pred             CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCC-C-cCchHHHHHHHHHH--hccCCCceEEEccCC-CCCcHHH
Confidence            46777777776533222221111255678888888887 3 232210 0000000  012367888888885 442    


Q ss_pred             -cccccCCCCCCccEEeeCCCCCCcccCCCC-------CCCCccEEEecCCc
Q 018478          291 -RLSSSIVDLQNLTSLYLVGCPKLKYFPEKG-------LPSSLLELWIGGCP  334 (355)
Q Consensus       291 -~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-------~~~~L~~L~l~~c~  334 (355)
                       .+...+..+++|+++++++| ++...+...       ..+.|+++++.+.|
T Consensus       268 ~~l~~~~~~~~~L~~l~l~~N-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         268 KDLAEVLAEKESLLELDLRGN-KFGEEGAQLLAESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             HHHHHHHhcCCCccEEECCCC-CCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence             33334456688888988887 565443211       12678888877654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.17  E-value=9e-13  Score=116.29  Aligned_cols=283  Identities=16%  Similarity=0.236  Sum_probs=137.0

Q ss_pred             CCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccccchhccccccCCCCCcccEEEE
Q 018478           29 RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRV  108 (355)
Q Consensus        29 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~~~~~~L~~L~l  108 (355)
                      ..|++|.++||..+..-+....          ...+++++.|.+.+|..+++..-.          .....+++|+.+++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~----------~~~CpnIehL~l~gc~~iTd~s~~----------sla~~C~~l~~l~L  197 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTF----------ASNCPNIEHLALYGCKKITDSSLL----------SLARYCRKLRHLNL  197 (483)
T ss_pred             cccccccccccccCCcchhhHH----------hhhCCchhhhhhhcceeccHHHHH----------HHHHhcchhhhhhh
Confidence            3456666666654443332221          133566666666666555543000          11234456666666


Q ss_pred             ccCcchhchh--hhccCCCCCcEEEeeccCCcCc--ccccccCCCCCceEeccccCCCc--CCCCCCCCCCCcceEEEcc
Q 018478          109 QGCSKLESIA--ETLDNSTSLETIHIFYCENMKI--LPSGLHNLRQLQEISIEGCGNLE--SFPEGGLPCAKLKEVVIRW  182 (355)
Q Consensus       109 ~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~l~--~~~~~~~~~~~L~~L~l~~  182 (355)
                      ..|..++...  .....|++|++|+++.|+.+..  +.....++..++.+...+|....  .+-..-..+..+.++++..
T Consensus       198 ~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~  277 (483)
T KOG4341|consen  198 HSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQH  277 (483)
T ss_pred             cccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhh
Confidence            6655554321  1223466666666666664433  11223334445555444443221  1111111123344444445


Q ss_pred             ccCcCccc--ccccCCCCCceEEEe-ecCcCC------CCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecc
Q 018478          183 CGRLEALP--KGLHNLKSLQKLTIG-KGGLEE------DGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEG  253 (355)
Q Consensus       183 ~~~~~~~p--~~l~~~~~L~~L~l~-~~~i~~------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  253 (355)
                      |..+++..  ..-..+..|+.|+.+ .+.+++      .....+|+.+.+.+|...++.-....  ..+++.|+.+++.+
T Consensus       278 c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l--~rn~~~Le~l~~e~  355 (483)
T KOG4341|consen  278 CNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTML--GRNCPHLERLDLEE  355 (483)
T ss_pred             hccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhh--hcCChhhhhhcccc
Confidence            54444321  111334455555555 222222      12345666666666665544332211  34556666666666


Q ss_pred             cCCcccccCccccccCCCCCCCCccceEEeccCCCcccc-----cccCCCCCCccEEeeCCCCCCcccCCC--CCCCCcc
Q 018478          254 CDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERL-----SSSIVDLQNLTSLYLVGCPKLKYFPEK--GLPSSLL  326 (355)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-----~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~  326 (355)
                       |.....-.  +   .......+.|+.+.+++|..++.-     .....++..|..+.+++|+.++.--..  ..+++|+
T Consensus       356 -~~~~~d~t--L---~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Le  429 (483)
T KOG4341|consen  356 -CGLITDGT--L---ASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLE  429 (483)
T ss_pred             -cceehhhh--H---hhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccc
Confidence             44332210  0   001134456666767666544432     333466777888888888766654332  2367888


Q ss_pred             EEEecCCchhhHh
Q 018478          327 ELWIGGCPLIEEK  339 (355)
Q Consensus       327 ~L~l~~c~~l~~~  339 (355)
                      .+++.+|...+..
T Consensus       430 ri~l~~~q~vtk~  442 (483)
T KOG4341|consen  430 RIELIDCQDVTKE  442 (483)
T ss_pred             eeeeechhhhhhh
Confidence            8888888766554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.15  E-value=1.4e-12  Score=114.26  Aligned_cols=126  Identities=13%  Similarity=0.185  Sum_probs=96.3

Q ss_pred             CccEEeecccccCcccccCccC--CCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccc
Q 018478            7 SLEILEIWSCRSLTYLAAVQLP--RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSK   84 (355)
Q Consensus         7 ~L~~L~l~~~~~l~~l~~~~~~--~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~   84 (355)
                      .-.+|.+. -+.+++||+..|.  ++|++|+|+. ++|+.+..+.           |.++.++.+|.+-+.+.++++   
T Consensus        68 ~tveirLd-qN~I~~iP~~aF~~l~~LRrLdLS~-N~Is~I~p~A-----------F~GL~~l~~Lvlyg~NkI~~l---  131 (498)
T KOG4237|consen   68 ETVEIRLD-QNQISSIPPGAFKTLHRLRRLDLSK-NNISFIAPDA-----------FKGLASLLSLVLYGNNKITDL---  131 (498)
T ss_pred             cceEEEec-cCCcccCChhhccchhhhceecccc-cchhhcChHh-----------hhhhHhhhHHHhhcCCchhhh---
Confidence            56778887 5789999998887  8999999999 7788877765           777888888888776677777   


Q ss_pred             cccchhccccccC--CCCCcccEEEEccCcchh-chhhhccCCCCCcEEEeeccCCcCcccc-cccCCCCCceEeccccC
Q 018478           85 NELSATLESLEVG--NLPPSLKSLRVQGCSKLE-SIAETLDNSTSLETIHIFYCENMKILPS-GLHNLRQLQEISIEGCG  160 (355)
Q Consensus        85 n~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~  160 (355)
                                +.+  ..+.+|+.|.+.-|. +. .....+..+++|..|.+.+|. ++.+++ ++..+..++.+.+..++
T Consensus       132 ----------~k~~F~gL~slqrLllNan~-i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np  199 (498)
T KOG4237|consen  132 ----------PKGAFGGLSSLQRLLLNANH-INCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNP  199 (498)
T ss_pred             ----------hhhHhhhHHHHHHHhcChhh-hcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCc
Confidence                      554  344678888887776 44 334667788999999999877 666665 67777788887776654

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.07  E-value=4e-11  Score=108.20  Aligned_cols=238  Identities=21%  Similarity=0.159  Sum_probs=125.7

Q ss_pred             cccccccEEEecCCCccchhccccccchhccccccCCCCCcccEEEEccCcch------hchhhhccCCCCCcEEEeecc
Q 018478           62 YTSYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQGCSKL------ESIAETLDNSTSLETIHIFYC  135 (355)
Q Consensus        62 ~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~------~~~~~~~~~l~~L~~L~l~~~  135 (355)
                      ..+.+|+.+.++++. ++..    ..... +  ......++++.++++++...      ..++..+..+++|++|++++|
T Consensus        20 ~~l~~L~~l~l~~~~-l~~~----~~~~i-~--~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~   91 (319)
T cd00116          20 PKLLCLQVLRLEGNT-LGEE----AAKAL-A--SALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDN   91 (319)
T ss_pred             HHHhhccEEeecCCC-CcHH----HHHHH-H--HHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCC
Confidence            336678888887764 2111    00000 0  11123356777777765422      123445556777777777776


Q ss_pred             CCcCcccccccCCCC---CceEeccccCCCcC-----CCCCCCCC-CCcceEEEccccCcC----cccccccCCCCCceE
Q 018478          136 ENMKILPSGLHNLRQ---LQEISIEGCGNLES-----FPEGGLPC-AKLKEVVIRWCGRLE----ALPKGLHNLKSLQKL  202 (355)
Q Consensus       136 ~~~~~~~~~~~~l~~---L~~L~l~~~~~l~~-----~~~~~~~~-~~L~~L~l~~~~~~~----~~p~~l~~~~~L~~L  202 (355)
                      ......+..+..+.+   |+.|++++|. +..     +...+..+ ++|++|++++|....    .++..+..+      
T Consensus        92 ~~~~~~~~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~------  164 (319)
T cd00116          92 ALGPDGCGVLESLLRSSSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRAN------  164 (319)
T ss_pred             CCChhHHHHHHHHhccCcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhC------
Confidence            643333333333333   7777776653 221     11122223 566666666654221    111222233      


Q ss_pred             EEeecCcCCCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCccc-----ccCccccccCCCCCCCCc
Q 018478          203 TIGKGGLEEDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMV-----SFPPEDIRMGTTLPLPTS  277 (355)
Q Consensus       203 ~l~~~~i~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~  277 (355)
                                   .+|+.|++++|.............+..+++|++|++++ | .+.     .+....       ...++
T Consensus       165 -------------~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~-n-~i~~~~~~~l~~~~-------~~~~~  222 (319)
T cd00116         165 -------------RDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNN-N-GLTDEGASALAETL-------ASLKS  222 (319)
T ss_pred             -------------CCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccC-C-ccChHHHHHHHHHh-------cccCC
Confidence                         35666666666533222111111145568999999998 4 332     222222       45678


Q ss_pred             cceEEeccCCCccc-----ccccC-CCCCCccEEeeCCCCCCcccCCC------CCCCCccEEEecCCchhhH
Q 018478          278 LTSLAIFSFPNLER-----LSSSI-VDLQNLTSLYLVGCPKLKYFPEK------GLPSSLLELWIGGCPLIEE  338 (355)
Q Consensus       278 L~~L~l~~~~~l~~-----l~~~~-~~~~~L~~L~l~~~~~l~~~~~~------~~~~~L~~L~l~~c~~l~~  338 (355)
                      |++|++++| .++.     +...+ ...+.|++|++++| .++.....      ...++|+++++.++.--..
T Consensus       223 L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~  293 (319)
T cd00116         223 LEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGNKFGEE  293 (319)
T ss_pred             CCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence            999999995 4442     11111 23579999999998 66521111      1147899999998864433

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.05  E-value=3.5e-10  Score=113.26  Aligned_cols=126  Identities=24%  Similarity=0.314  Sum_probs=88.2

Q ss_pred             CCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCc-cchhccccccchhcccccc--CCCCCcccE
Q 018478           29 RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRS-LTSIFSKNELSATLESLEV--GNLPPSLKS  105 (355)
Q Consensus        29 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-l~~~~~~n~~~~~~~~~~~--~~~~~~L~~  105 (355)
                      ...+...+.+ +.+..++....             ++.|+.|-+.+... +..+             +.  ...++.|+.
T Consensus       523 ~~~rr~s~~~-~~~~~~~~~~~-------------~~~L~tLll~~n~~~l~~i-------------s~~ff~~m~~LrV  575 (889)
T KOG4658|consen  523 NSVRRMSLMN-NKIEHIAGSSE-------------NPKLRTLLLQRNSDWLLEI-------------SGEFFRSLPLLRV  575 (889)
T ss_pred             hheeEEEEec-cchhhccCCCC-------------CCccceEEEeecchhhhhc-------------CHHHHhhCcceEE
Confidence            4455555555 44555544432             45677776665331 3333             32  345578888


Q ss_pred             EEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEcc
Q 018478          106 LRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRW  182 (355)
Q Consensus       106 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~  182 (355)
                      ||+++|..+..+|..++.+-+|++|+++++. +..+|..++++..|.+|++..+..+..+|.....+.+|+.|.+..
T Consensus       576 LDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  576 LDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR  651 (889)
T ss_pred             EECCCCCccCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence            8888888888888888888888888888877 778888888888888888887766666655555588888888766

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.01  E-value=2.8e-10  Score=113.94  Aligned_cols=229  Identities=23%  Similarity=0.262  Sum_probs=152.6

Q ss_pred             ccCCCCCcccEEEEccCcc-hhchh-hhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCC
Q 018478           95 EVGNLPPSLKSLRVQGCSK-LESIA-ETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPC  172 (355)
Q Consensus        95 ~~~~~~~~L~~L~l~~~~~-~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~  172 (355)
                      +.....++|+.|-+.++.. +..++ ..|..++.|+.|++++|..+..+|..++++-+|+.|++++. .++.+|.++..+
T Consensus       539 ~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~L  617 (889)
T KOG4658|consen  539 AGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNL  617 (889)
T ss_pred             cCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHH
Confidence            3333445899999988763 44444 44677999999999999999999999999999999999985 789999999999


Q ss_pred             CCcceEEEccccCcCcccccccCCCCCceEEEeecCcC-------CCCCCCCccEEEecCCcchhhhhhhhcccCCCCCc
Q 018478          173 AKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLE-------EDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSS  245 (355)
Q Consensus       173 ~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~-------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~  245 (355)
                      .+|.+|++..+.....+|.....+.+|++|.+......       +...+.+|+.+.+..... .....     +..+++
T Consensus       618 k~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~-----l~~~~~  691 (889)
T KOG4658|consen  618 KKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLED-----LLGMTR  691 (889)
T ss_pred             HhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhHhh-----hhhhHH
Confidence            99999999988777777777777999999999833322       123445555555544332 10111     333344


Q ss_pred             cce----eEecccCCcccccCccccccCCCCCCCCccceEEeccCCCccccccc-----CCC-CCCccEEeeCCCCCCcc
Q 018478          246 LRE----LRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSS-----IVD-LQNLTSLYLVGCPKLKY  315 (355)
Q Consensus       246 L~~----L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-----~~~-~~~L~~L~l~~~~~l~~  315 (355)
                      |..    +.+.+ |.. .......       ..+.+|+.|.+.+|...+....+     ... ++++..+.+.+|..++.
T Consensus       692 L~~~~~~l~~~~-~~~-~~~~~~~-------~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~  762 (889)
T KOG4658|consen  692 LRSLLQSLSIEG-CSK-RTLISSL-------GSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRD  762 (889)
T ss_pred             HHHHhHhhhhcc-ccc-ceeeccc-------ccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccc
Confidence            442    22222 221 2222222       35678888888887654322211     122 55667777777766666


Q ss_pred             cCCCCCCCCccEEEecCCchhhHh
Q 018478          316 FPEKGLPSSLLELWIGGCPLIEEK  339 (355)
Q Consensus       316 ~~~~~~~~~L~~L~l~~c~~l~~~  339 (355)
                      .....++++|+.|.+.+|+.+...
T Consensus       763 l~~~~f~~~L~~l~l~~~~~~e~~  786 (889)
T KOG4658|consen  763 LTWLLFAPHLTSLSLVSCRLLEDI  786 (889)
T ss_pred             cchhhccCcccEEEEecccccccC
Confidence            655456788888888888766554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.93  E-value=4.5e-11  Score=109.51  Aligned_cols=190  Identities=21%  Similarity=0.296  Sum_probs=144.4

Q ss_pred             ccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEcc
Q 018478          103 LKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRW  182 (355)
Q Consensus       103 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~  182 (355)
                      -...|++.|. ...+|..+..+..|+.+.++.|. +..+|..+.++..|+.++++.| .+..+|..++.++ |+.|.+++
T Consensus        77 t~~aDlsrNR-~~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~sN  152 (722)
T KOG0532|consen   77 TVFADLSRNR-FSELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIVSN  152 (722)
T ss_pred             hhhhhccccc-cccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEEec
Confidence            4456677776 67788777778888888888877 7778888888888888999886 6788888887776 88888876


Q ss_pred             ccCcCcccccccCCCCCceEEEeecCcCCCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccC
Q 018478          183 CGRLEALPKGLHNLKSLQKLTIGKGGLEEDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFP  262 (355)
Q Consensus       183 ~~~~~~~p~~l~~~~~L~~L~l~~~~i~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  262 (355)
                       ++++.+|..++....                   |..|+++.|...+ .+..    ++++.+|+.|.+..  +.+..+|
T Consensus       153 -Nkl~~lp~~ig~~~t-------------------l~~ld~s~nei~s-lpsq----l~~l~slr~l~vrR--n~l~~lp  205 (722)
T KOG0532|consen  153 -NKLTSLPEEIGLLPT-------------------LAHLDVSKNEIQS-LPSQ----LGYLTSLRDLNVRR--NHLEDLP  205 (722)
T ss_pred             -CccccCCcccccchh-------------------HHHhhhhhhhhhh-chHH----hhhHHHHHHHHHhh--hhhhhCC
Confidence             567778877665544                   4445556665433 3332    66788888898887  7888898


Q ss_pred             ccccccCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEeeCCCCCCcccCC----CCCCCCccEEEecCC
Q 018478          263 PEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPE----KGLPSSLLELWIGGC  333 (355)
Q Consensus       263 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~----~~~~~~L~~L~l~~c  333 (355)
                      ++.       . --.|..||+++ +++..+|..|..|..|++|.+.+|| +++-|.    .|...-.++|++..|
T Consensus       206 ~El-------~-~LpLi~lDfSc-Nkis~iPv~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  206 EEL-------C-SLPLIRLDFSC-NKISYLPVDFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             HHH-------h-CCceeeeeccc-CceeecchhhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence            877       3 22688899996 8999999999999999999999885 777554    345677888888888

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.72  E-value=3.6e-10  Score=100.09  Aligned_cols=256  Identities=17%  Similarity=0.200  Sum_probs=170.0

Q ss_pred             cccEEEecCCCccchhccccccchhccccccCCCCCcccEEEEccCcchhch--hhhccCCCCCcEEEeeccCCcCccc-
Q 018478           66 LLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESI--AETLDNSTSLETIHIFYCENMKILP-  142 (355)
Q Consensus        66 ~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~-  142 (355)
                      .|+.|.+.+|.....-    ...      .....+|+++.|.+.+|..++..  -..-..|++|+++++..|..++... 
T Consensus       139 ~lk~LSlrG~r~v~~s----slr------t~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~L  208 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDS----SLR------TFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSL  208 (483)
T ss_pred             ccccccccccccCCcc----hhh------HHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHH
Confidence            5899999998765543    000      12256789999999999877642  2223458999999999998887632 


Q ss_pred             -ccccCCCCCceEeccccCCCcC--CCCCCCCCCCcceEEEccccCcCcc--cccccCCCCCceEEEe-ecCcCCC----
Q 018478          143 -SGLHNLRQLQEISIEGCGNLES--FPEGGLPCAKLKEVVIRWCGRLEAL--PKGLHNLKSLQKLTIG-KGGLEED----  212 (355)
Q Consensus       143 -~~~~~l~~L~~L~l~~~~~l~~--~~~~~~~~~~L~~L~l~~~~~~~~~--p~~l~~~~~L~~L~l~-~~~i~~~----  212 (355)
                       .....+++|+++++++|+.+..  +-.....+.+++++...||...+.-  -..-+.+.-+-++++. .+.+++.    
T Consensus       209 k~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~  288 (483)
T KOG4341|consen  209 KYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWL  288 (483)
T ss_pred             HHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHH
Confidence             2334589999999999987765  1122344667888877887654321  1111333344444433 2333332    


Q ss_pred             --CCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcc
Q 018478          213 --GLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLE  290 (355)
Q Consensus       213 --~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  290 (355)
                        .....|+.++.++|..+++.+...-  -++.++|+.+.+.+ |.+++......     .+..-+.|+.+++..|..+.
T Consensus       289 i~~~c~~lq~l~~s~~t~~~d~~l~aL--g~~~~~L~~l~l~~-c~~fsd~~ft~-----l~rn~~~Le~l~~e~~~~~~  360 (483)
T KOG4341|consen  289 IACGCHALQVLCYSSCTDITDEVLWAL--GQHCHNLQVLELSG-CQQFSDRGFTM-----LGRNCPHLERLDLEECGLIT  360 (483)
T ss_pred             HhhhhhHhhhhcccCCCCCchHHHHHH--hcCCCceEEEeccc-cchhhhhhhhh-----hhcCChhhhhhcccccceeh
Confidence              2467889999999988776555433  56789999999999 87755433211     12455689999999876555


Q ss_pred             cc--cccCCCCCCccEEeeCCCCCCcccCCCC------CCCCccEEEecCCchhhHh
Q 018478          291 RL--SSSIVDLQNLTSLYLVGCPKLKYFPEKG------LPSSLLELWIGGCPLIEEK  339 (355)
Q Consensus       291 ~l--~~~~~~~~~L~~L~l~~~~~l~~~~~~~------~~~~L~~L~l~~c~~l~~~  339 (355)
                      .-  ..--.+++.|+.+.++.|..+++-+-..      -...|+.+.+.+||.+++.
T Consensus       361 d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~  417 (483)
T KOG4341|consen  361 DGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDA  417 (483)
T ss_pred             hhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHH
Confidence            32  2222789999999999997776652211      1478899999999988775

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.64  E-value=3e-08  Score=92.29  Aligned_cols=170  Identities=21%  Similarity=0.299  Sum_probs=77.3

Q ss_pred             cccEEEEccCcchhchhhhccCCC-CCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEE
Q 018478          102 SLKSLRVQGCSKLESIAETLDNST-SLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVI  180 (355)
Q Consensus       102 ~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l  180 (355)
                      .++.|++.++. +..+++...... +|+.|++++|. +..+|..++.+++|+.|++++| .+..+|...+..++|+.|++
T Consensus       117 ~l~~L~l~~n~-i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L~l  193 (394)
T COG4886         117 NLTSLDLDNNN-ITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNLDL  193 (394)
T ss_pred             ceeEEecCCcc-cccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhhheec
Confidence            45555555444 444444443332 55555555544 4444434445555555555554 34444443334445555555


Q ss_pred             ccccCcCcccccccCCCCCceEEEeecCcCCCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccc
Q 018478          181 RWCGRLEALPKGLHNLKSLQKLTIGKGGLEEDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVS  260 (355)
Q Consensus       181 ~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  260 (355)
                      ++| .+..+|..+....                   .|+++.+.+|........     +..+.++..+.+.+  +.+..
T Consensus       194 s~N-~i~~l~~~~~~~~-------------------~L~~l~~~~N~~~~~~~~-----~~~~~~l~~l~l~~--n~~~~  246 (394)
T COG4886         194 SGN-KISDLPPEIELLS-------------------ALEELDLSNNSIIELLSS-----LSNLKNLSGLELSN--NKLED  246 (394)
T ss_pred             cCC-ccccCchhhhhhh-------------------hhhhhhhcCCcceecchh-----hhhcccccccccCC--ceeee
Confidence            552 3444444333333                   344455554432222111     33444444444433  33333


Q ss_pred             cCccccccCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEeeCCC
Q 018478          261 FPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGC  310 (355)
Q Consensus       261 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~  310 (355)
                      ++...       ..++.++.|++++ +.+..++. +..+.++++|+++++
T Consensus       247 ~~~~~-------~~l~~l~~L~~s~-n~i~~i~~-~~~~~~l~~L~~s~n  287 (394)
T COG4886         247 LPESI-------GNLSNLETLDLSN-NQISSISS-LGSLTNLRELDLSGN  287 (394)
T ss_pred             ccchh-------ccccccceecccc-cccccccc-ccccCccCEEeccCc
Confidence            22222       2344455555555 45555444 455555555555554

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.62  E-value=3.2e-07  Score=83.40  Aligned_cols=90  Identities=29%  Similarity=0.543  Sum_probs=42.8

Q ss_pred             CCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEccccCcCcccccccCCCCCceEE
Q 018478          124 STSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLT  203 (355)
Q Consensus       124 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~  203 (355)
                      +.+++.|++++|. +..+|. +  ..+|+.|.+.+|..+..+|..+.  ++|+.|.+.+|..+..+|.      +|+.|.
T Consensus        51 ~~~l~~L~Is~c~-L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------sLe~L~  118 (426)
T PRK15386         51 ARASGRLYIKDCD-IESLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------SVRSLE  118 (426)
T ss_pred             hcCCCEEEeCCCC-CcccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------ccceEE
Confidence            4555555555553 555541 1  22455566655555555554332  3566666666544444443      344444


Q ss_pred             EeecCcCC-CCCCCCccEEEecC
Q 018478          204 IGKGGLEE-DGLPTNLHSLDIRG  225 (355)
Q Consensus       204 l~~~~i~~-~~~~~~L~~L~l~~  225 (355)
                      +....... ...|++|+.|.+.+
T Consensus       119 L~~n~~~~L~~LPssLk~L~I~~  141 (426)
T PRK15386        119 IKGSATDSIKNVPNGLTSLSINS  141 (426)
T ss_pred             eCCCCCcccccCcchHhheeccc
Confidence            43111111 12445666666543

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.62  E-value=1.6e-07  Score=85.30  Aligned_cols=132  Identities=23%  Similarity=0.435  Sum_probs=77.1

Q ss_pred             CCCccEEeecccccCcccccCccCCCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccc
Q 018478            5 NSSLEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSK   84 (355)
Q Consensus         5 ~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~   84 (355)
                      +++++.|++++| .++.+|  .+|++|++|.+.+|+.++.+|...              .++|+.|.+.+|..+..+   
T Consensus        51 ~~~l~~L~Is~c-~L~sLP--~LP~sLtsL~Lsnc~nLtsLP~~L--------------P~nLe~L~Ls~Cs~L~sL---  110 (426)
T PRK15386         51 ARASGRLYIKDC-DIESLP--VLPNELTEITIENCNNLTTLPGSI--------------PEGLEKLTVCHCPEISGL---  110 (426)
T ss_pred             hcCCCEEEeCCC-CCcccC--CCCCCCcEEEccCCCCcccCCchh--------------hhhhhheEccCccccccc---
Confidence            467788888877 677776  466778888888888777777544              457888888877655444   


Q ss_pred             cccchhccccccCCCCCcccEEEEccCc--chhchhhhccCCCCCcEEEeeccCCc--CcccccccCCCCCceEeccccC
Q 018478           85 NELSATLESLEVGNLPPSLKSLRVQGCS--KLESIAETLDNSTSLETIHIFYCENM--KILPSGLHNLRQLQEISIEGCG  160 (355)
Q Consensus        85 n~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~  160 (355)
                                     +++|+.|++.++.  .+..+|      ++|+.|.+.++...  ..++..  -.++|+.|.+.+|.
T Consensus       111 ---------------P~sLe~L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~  167 (426)
T PRK15386        111 ---------------PESVRSLEIKGSATDSIKNVP------NGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCS  167 (426)
T ss_pred             ---------------ccccceEEeCCCCCcccccCc------chHhheeccccccccccccccc--cCCcccEEEecCCC
Confidence                           3567777776433  122333      34556655332211  111111  12457777777664


Q ss_pred             CCcCCCCCCCCCCCcceEEEcc
Q 018478          161 NLESFPEGGLPCAKLKEVVIRW  182 (355)
Q Consensus       161 ~l~~~~~~~~~~~~L~~L~l~~  182 (355)
                      .+ .+|..+.  .+|+.|+++.
T Consensus       168 ~i-~LP~~LP--~SLk~L~ls~  186 (426)
T PRK15386        168 NI-ILPEKLP--ESLQSITLHI  186 (426)
T ss_pred             cc-cCccccc--ccCcEEEecc
Confidence            33 3443333  3677777655

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.55  E-value=4.9e-08  Score=79.01  Aligned_cols=122  Identities=20%  Similarity=0.224  Sum_probs=38.5

Q ss_pred             cccccEEEecCCCccchhccccccchhccccccC-CCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCccc
Q 018478           64 SYLLEELCISSCRSLTSIFSKNELSATLESLEVG-NLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILP  142 (355)
Q Consensus        64 ~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  142 (355)
                      ..++++|+++++ .++.+             ..- ..+.+|+.|++++|. ++.++ ++..+++|+.|++++|. ++.+.
T Consensus        18 ~~~~~~L~L~~n-~I~~I-------------e~L~~~l~~L~~L~Ls~N~-I~~l~-~l~~L~~L~~L~L~~N~-I~~i~   80 (175)
T PF14580_consen   18 PVKLRELNLRGN-QISTI-------------ENLGATLDKLEVLDLSNNQ-ITKLE-GLPGLPRLKTLDLSNNR-ISSIS   80 (175)
T ss_dssp             --------------------------------S--TT-TT--EEE-TTS---S--T-T----TT--EEE--SS----S-C
T ss_pred             cccccccccccc-ccccc-------------cchhhhhcCCCEEECCCCC-Ccccc-CccChhhhhhcccCCCC-CCccc
Confidence            445677777664 33433             222 234567777777776 65553 45557777777777766 55554


Q ss_pred             ccc-cCCCCCceEeccccCCCcCCCC--CCCCCCCcceEEEccccCcCcccc----cccCCCCCceEEE
Q 018478          143 SGL-HNLRQLQEISIEGCGNLESFPE--GGLPCAKLKEVVIRWCGRLEALPK----GLHNLKSLQKLTI  204 (355)
Q Consensus       143 ~~~-~~l~~L~~L~l~~~~~l~~~~~--~~~~~~~L~~L~l~~~~~~~~~p~----~l~~~~~L~~L~l  204 (355)
                      ..+ ..+++|+.|++++| .+..+.+  .+..+++|+.|++.+|+.... +.    .+..+|+|+.|+-
T Consensus        81 ~~l~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   81 EGLDKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             HHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETT
T ss_pred             cchHHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCC
Confidence            333 24677777777765 4544432  234467777777777653321 21    3456666666644

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.49  E-value=6.7e-08  Score=78.25  Aligned_cols=129  Identities=22%  Similarity=0.265  Sum_probs=36.3

Q ss_pred             CcccEEEEccCcchhchhhhcc-CCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCC-CCCCcceE
Q 018478          101 PSLKSLRVQGCSKLESIAETLD-NSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGL-PCAKLKEV  178 (355)
Q Consensus       101 ~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~-~~~~L~~L  178 (355)
                      .+++.|++.+|. ++.+. .++ .+.+|+.|++++|. +..+. .+..++.|+.|++++| .++.+...+. .+++|++|
T Consensus        19 ~~~~~L~L~~n~-I~~Ie-~L~~~l~~L~~L~Ls~N~-I~~l~-~l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~L   93 (175)
T PF14580_consen   19 VKLRELNLRGNQ-ISTIE-NLGATLDKLEVLDLSNNQ-ITKLE-GLPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQEL   93 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS---S--T-T----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred             cccccccccccc-ccccc-chhhhhcCCCEEECCCCC-Ccccc-CccChhhhhhcccCCC-CCCccccchHHhCCcCCEE
Confidence            456666666665 55443 233 35666666666665 54443 3555666666666665 4444433221 35566666


Q ss_pred             EEccccCcCcccccccCCCCCceEEEeecCcCCCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecc
Q 018478          179 VIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEEDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEG  253 (355)
Q Consensus       179 ~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  253 (355)
                      ++++| .+..+.+ +                .....+++|+.|++.+|+...... .....+..+|+|+.||-..
T Consensus        94 ~L~~N-~I~~l~~-l----------------~~L~~l~~L~~L~L~~NPv~~~~~-YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen   94 YLSNN-KISDLNE-L----------------EPLSSLPKLRVLSLEGNPVCEKKN-YRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             E-TTS----SCCC-C----------------GGGGG-TT--EEE-TT-GGGGSTT-HHHHHHHH-TT-SEETTEE
T ss_pred             ECcCC-cCCChHH-h----------------HHHHcCCCcceeeccCCcccchhh-HHHHHHHHcChhheeCCEE
Confidence            66653 2332211 1                111224566666777776443211 0011145677888877655

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.48  E-value=8.8e-08  Score=89.19  Aligned_cols=166  Identities=26%  Similarity=0.352  Sum_probs=120.2

Q ss_pred             cccccEEEecCCCccchhccccccchhccccccC-CCCC-cccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcc
Q 018478           64 SYLLEELCISSCRSLTSIFSKNELSATLESLEVG-NLPP-SLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKIL  141 (355)
Q Consensus        64 ~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~-~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  141 (355)
                      .+.++.+.+.+. .++.+             +.. ..+. +|+.|+++++. +..+|..+..+++|+.|++++|+ +..+
T Consensus       115 ~~~l~~L~l~~n-~i~~i-------------~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~-l~~l  178 (394)
T COG4886         115 LTNLTSLDLDNN-NITDI-------------PPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFND-LSDL  178 (394)
T ss_pred             ccceeEEecCCc-ccccC-------------ccccccchhhcccccccccc-hhhhhhhhhccccccccccCCch-hhhh
Confidence            456666766653 44444             443 4443 89999999988 88887778889999999999988 8888


Q ss_pred             cccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEccccCcCcccccccCCCCCceEEEeecCc----CCCCCCCC
Q 018478          142 PSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGL----EEDGLPTN  217 (355)
Q Consensus       142 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i----~~~~~~~~  217 (355)
                      +...+..++|+.|+++++ .+..+|........|+++.+++|. ....+..+..+.++..+.+....+    ...+.+++
T Consensus       179 ~~~~~~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~  256 (394)
T COG4886         179 PKLLSNLSNLNNLDLSGN-KISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSN  256 (394)
T ss_pred             hhhhhhhhhhhheeccCC-ccccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCceeeeccchhccccc
Confidence            876668999999999997 788888765455679999999864 344456777777777777653222    23455667


Q ss_pred             ccEEEecCCcchhhhhhhhcccCCCCCccceeEecc
Q 018478          218 LHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEG  253 (355)
Q Consensus       218 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  253 (355)
                      ++.|++++|... .+..     +..+.+++.|++++
T Consensus       257 l~~L~~s~n~i~-~i~~-----~~~~~~l~~L~~s~  286 (394)
T COG4886         257 LETLDLSNNQIS-SISS-----LGSLTNLRELDLSG  286 (394)
T ss_pred             cceecccccccc-cccc-----ccccCccCEEeccC
Confidence            888888776532 2322     55677788888877

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.48  E-value=4e-08  Score=87.83  Aligned_cols=149  Identities=19%  Similarity=0.204  Sum_probs=88.1

Q ss_pred             CCCcceEEEccccCc--CcccccccCCCCCceEEEeecCcCC------CCCCCCccEEEecCCcchhhhhhhhcccCCCC
Q 018478          172 CAKLKEVVIRWCGRL--EALPKGLHNLKSLQKLTIGKGGLEE------DGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRF  243 (355)
Q Consensus       172 ~~~L~~L~l~~~~~~--~~~p~~l~~~~~L~~L~l~~~~i~~------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l  243 (355)
                      |++++.|+++.|=.-  ..+.....++++|+.|.++.+.+..      ....++|+.|.+.+|.... ....|.  +..+
T Consensus       145 ~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~-k~V~~~--~~~f  221 (505)
T KOG3207|consen  145 LPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSW-KDVQWI--LLTF  221 (505)
T ss_pred             CCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCH-HHHHHH--HHhC
Confidence            455555555553111  1111233455566666655222211      1245788888888887443 333344  6788


Q ss_pred             CccceeEecccCCcc--cccCccccccCCCCCCCCccceEEeccCCCccccc--ccCCCCCCccEEeeCCCCCCcccCC-
Q 018478          244 SSLRELRIEGCDDDM--VSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLS--SSIVDLQNLTSLYLVGCPKLKYFPE-  318 (355)
Q Consensus       244 ~~L~~L~l~~~~~~~--~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~~~~~~~~L~~L~l~~~~~l~~~~~-  318 (355)
                      |+|+.|++.. +..+  ...+.         ..++.|++|++++ +++...+  .....+|.|+.|.++.| .+.++.. 
T Consensus       222 Psl~~L~L~~-N~~~~~~~~~~---------~i~~~L~~LdLs~-N~li~~~~~~~~~~l~~L~~Lnls~t-gi~si~~~  289 (505)
T KOG3207|consen  222 PSLEVLYLEA-NEIILIKATST---------KILQTLQELDLSN-NNLIDFDQGYKVGTLPGLNQLNLSST-GIASIAEP  289 (505)
T ss_pred             CcHHHhhhhc-ccccceecchh---------hhhhHHhhccccC-Ccccccccccccccccchhhhhcccc-CcchhcCC
Confidence            8999999988 3222  22222         3567888999998 4444444  23467888888888887 6776532 


Q ss_pred             -C------CCCCCccEEEecCCch
Q 018478          319 -K------GLPSSLLELWIGGCPL  335 (355)
Q Consensus       319 -~------~~~~~L~~L~l~~c~~  335 (355)
                       .      ..+++|++|++..++-
T Consensus       290 d~~s~~kt~~f~kL~~L~i~~N~I  313 (505)
T KOG3207|consen  290 DVESLDKTHTFPKLEYLNISENNI  313 (505)
T ss_pred             CccchhhhcccccceeeecccCcc
Confidence             1      1268888888877653

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.47  E-value=3.8e-08  Score=84.07  Aligned_cols=99  Identities=23%  Similarity=0.331  Sum_probs=61.8

Q ss_pred             CcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEE
Q 018478          101 PSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVI  180 (355)
Q Consensus       101 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l  180 (355)
                      ..|+.+|+++|. ++.+..++.-.|+++.|++++|. +..+- .++.+++|+.|++++| .+..+.-.-..+-|+++|.+
T Consensus       284 q~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~-i~~v~-nLa~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  284 QELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNR-IRTVQ-NLAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             hhhhhccccccc-hhhhhhhhhhccceeEEeccccc-eeeeh-hhhhcccceEeecccc-hhHhhhhhHhhhcCEeeeeh
Confidence            357778888776 77676666667788888888777 44442 3666777888888775 44444333334557777777


Q ss_pred             ccccCcCcccccccCCCCCceEEEe
Q 018478          181 RWCGRLEALPKGLHNLKSLQKLTIG  205 (355)
Q Consensus       181 ~~~~~~~~~p~~l~~~~~L~~L~l~  205 (355)
                      ++| .++++ .+++.+.+|..|++.
T Consensus       360 a~N-~iE~L-SGL~KLYSLvnLDl~  382 (490)
T KOG1259|consen  360 AQN-KIETL-SGLRKLYSLVNLDLS  382 (490)
T ss_pred             hhh-hHhhh-hhhHhhhhheecccc
Confidence            774 34443 345555555555444

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.41  E-value=9.1e-08  Score=81.76  Aligned_cols=227  Identities=19%  Similarity=0.222  Sum_probs=138.4

Q ss_pred             ccccccEEEecCCCccchhccccccchhccccccC-CCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcc
Q 018478           63 TSYLLEELCISSCRSLTSIFSKNELSATLESLEVG-NLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKIL  141 (355)
Q Consensus        63 ~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  141 (355)
                      .+.+|..|..++..   .-+...++....-  ++. +.+.+|+.+.++.|+ .+.+-.....=|.|+.+.+.... ++..
T Consensus       180 f~~~l~~l~vs~~~---~p~~~sni~~~~l--~f~l~~f~~l~~~~~s~~~-~~~i~~~~~~kptl~t~~v~~s~-~~~~  252 (490)
T KOG1259|consen  180 FCTQLVALVVTPVK---DPIDRSNIIPNRL--SFNLNAFRNLKTLKFSALS-TENIVDIELLKPTLQTICVHNTT-IQDV  252 (490)
T ss_pred             hhhheeEEEecCCC---CCCcccccccccc--ccchHHhhhhheeeeeccc-hhheeceeecCchhheeeeeccc-cccc
Confidence            36678888776532   1112222211110  222 455788888888887 44443333334778888777643 3333


Q ss_pred             cccccCCCCCceEeccccCCCcCCC--CCCCCCCCcceEEEccccCcCcccccccCCCCCceEEEeecCcC---CCCCCC
Q 018478          142 PSGLHNLRQLQEISIEGCGNLESFP--EGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLE---EDGLPT  216 (355)
Q Consensus       142 ~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~---~~~~~~  216 (355)
                      |. +--...+.......- ....-|  ..+-.+..|+++++++| .++.+.++..-.+.++.|+++.+.+.   ....++
T Consensus       253 ~~-l~pe~~~~D~~~~E~-~t~~G~~~~~~dTWq~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~  329 (490)
T KOG1259|consen  253 PS-LLPETILADPSGSEP-STSNGSALVSADTWQELTELDLSGN-LITQIDESVKLAPKLRRLILSQNRIRTVQNLAELP  329 (490)
T ss_pred             cc-ccchhhhcCccCCCC-CccCCceEEecchHhhhhhcccccc-chhhhhhhhhhccceeEEeccccceeeehhhhhcc
Confidence            21 111223333322221 111111  22333678889999984 56666677788889999999855544   445678


Q ss_pred             CccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccccc--
Q 018478          217 NLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSS--  294 (355)
Q Consensus       217 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--  294 (355)
                      +|+.||+++|.. ..... |   -..+.++++|.+++  +.++++..-        ..+-+|..||+++ ++++.+.+  
T Consensus       330 ~L~~LDLS~N~L-s~~~G-w---h~KLGNIKtL~La~--N~iE~LSGL--------~KLYSLvnLDl~~-N~Ie~ldeV~  393 (490)
T KOG1259|consen  330 QLQLLDLSGNLL-AECVG-W---HLKLGNIKTLKLAQ--NKIETLSGL--------RKLYSLVNLDLSS-NQIEELDEVN  393 (490)
T ss_pred             cceEeecccchh-Hhhhh-h---HhhhcCEeeeehhh--hhHhhhhhh--------Hhhhhheeccccc-cchhhHHHhc
Confidence            999999998763 32221 2   24578899999998  667666532        2566899999999 67776643  


Q ss_pred             cCCCCCCccEEeeCCCCCCccc
Q 018478          295 SIVDLQNLTSLYLVGCPKLKYF  316 (355)
Q Consensus       295 ~~~~~~~L~~L~l~~~~~l~~~  316 (355)
                      .++++|.|+++.+.+|| +..+
T Consensus       394 ~IG~LPCLE~l~L~~NP-l~~~  414 (490)
T KOG1259|consen  394 HIGNLPCLETLRLTGNP-LAGS  414 (490)
T ss_pred             ccccccHHHHHhhcCCC-cccc
Confidence            56889999999999985 4443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.40  E-value=9.2e-09  Score=94.71  Aligned_cols=152  Identities=26%  Similarity=0.322  Sum_probs=110.4

Q ss_pred             CCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEE
Q 018478          100 PPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVV  179 (355)
Q Consensus       100 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~  179 (355)
                      |..|+.+.++.|. +..+|..+..+..|+.|+++.|. +..+|..+..++ |+.|.+++| +++.+|+.++....|..|+
T Consensus        97 f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~~tl~~ld  172 (722)
T KOG0532|consen   97 FVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGLLPTLAHLD  172 (722)
T ss_pred             HHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEEecC-ccccCCcccccchhHHHhh
Confidence            3568888888887 77888888888999999999877 888888888877 888888876 7888888888778888898


Q ss_pred             EccccCcCcccccccCCCCCceEEEe---ecCcCCCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCC
Q 018478          180 IRWCGRLEALPKGLHNLKSLQKLTIG---KGGLEEDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDD  256 (355)
Q Consensus       180 l~~~~~~~~~p~~l~~~~~L~~L~l~---~~~i~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  256 (355)
                      .+.| .+..+|..++.+.+|+.|.+.   ...+|..-..-.|..||++.|+ +..++.+    |..|+.|++|-+.+  +
T Consensus       173 ~s~n-ei~slpsql~~l~slr~l~vrRn~l~~lp~El~~LpLi~lDfScNk-is~iPv~----fr~m~~Lq~l~Len--N  244 (722)
T KOG0532|consen  173 VSKN-EIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLPLIRLDFSCNK-ISYLPVD----FRKMRHLQVLQLEN--N  244 (722)
T ss_pred             hhhh-hhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCceeeeecccCc-eeecchh----hhhhhhheeeeecc--C
Confidence            8885 466677788888888888776   2333332223456677777655 3344443    56777777777765  5


Q ss_pred             cccccCc
Q 018478          257 DMVSFPP  263 (355)
Q Consensus       257 ~~~~~~~  263 (355)
                      .+++=|+
T Consensus       245 PLqSPPA  251 (722)
T KOG0532|consen  245 PLQSPPA  251 (722)
T ss_pred             CCCCChH
Confidence            5554444

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.40  E-value=4.9e-08  Score=87.26  Aligned_cols=91  Identities=20%  Similarity=0.170  Sum_probs=46.8

Q ss_pred             CCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCccccc
Q 018478          214 LPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLS  293 (355)
Q Consensus       214 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~  293 (355)
                      .+..|+.|++++|..++..... .  ...++.|+.|+++.  .++.++..-...-......+++|+.|.+.. +++..++
T Consensus       244 i~~~L~~LdLs~N~li~~~~~~-~--~~~l~~L~~Lnls~--tgi~si~~~d~~s~~kt~~f~kL~~L~i~~-N~I~~w~  317 (505)
T KOG3207|consen  244 ILQTLQELDLSNNNLIDFDQGY-K--VGTLPGLNQLNLSS--TGIASIAEPDVESLDKTHTFPKLEYLNISE-NNIRDWR  317 (505)
T ss_pred             hhhHHhhccccCCccccccccc-c--cccccchhhhhccc--cCcchhcCCCccchhhhcccccceeeeccc-Ccccccc
Confidence            3456677777777655432111 1  55667777777776  333332210100111123556788888887 5555554


Q ss_pred             c--cCCCCCCccEEeeCCC
Q 018478          294 S--SIVDLQNLTSLYLVGC  310 (355)
Q Consensus       294 ~--~~~~~~~L~~L~l~~~  310 (355)
                      .  .+..+++|++|.+..+
T Consensus       318 sl~~l~~l~nlk~l~~~~n  336 (505)
T KOG3207|consen  318 SLNHLRTLENLKHLRITLN  336 (505)
T ss_pred             ccchhhccchhhhhhcccc
Confidence            3  2344556666655443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.23  E-value=2.6e-08  Score=84.89  Aligned_cols=180  Identities=13%  Similarity=0.180  Sum_probs=86.8

Q ss_pred             cccEEEEccCcchh--chhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCC--CCCCCCCCcce
Q 018478          102 SLKSLRVQGCSKLE--SIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFP--EGGLPCAKLKE  177 (355)
Q Consensus       102 ~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~~~~~L~~  177 (355)
                      .|+.+|++... ++  .+...++.|.+|+.|.+.++..-+.+...++.-.+|+.++++.|..+++..  -.+.+|+.|..
T Consensus       186 Rlq~lDLS~s~-it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  186 RLQHLDLSNSV-ITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhHHhhcchhh-eeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            36666666543 32  233344556666666666655333344455555666666666665555433  12344566666


Q ss_pred             EEEccccCcCcccc-cccCCCCCceEEEeecCcCCCCCCCCccEEEecCCcchhhh-hhhhcccCCCCCccceeEecccC
Q 018478          178 VVIRWCGRLEALPK-GLHNLKSLQKLTIGKGGLEEDGLPTNLHSLDIRGNMEIWKS-MIEWGQGFHRFSSLRELRIEGCD  255 (355)
Q Consensus       178 L~l~~~~~~~~~p~-~l~~~~~L~~L~l~~~~i~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~  255 (355)
                      |.+++|...+..-. .+                  ....++|+.|+++|+...-.. ..+..  ...+++|.+||++. |
T Consensus       265 LNlsWc~l~~~~Vtv~V------------------~hise~l~~LNlsG~rrnl~~sh~~tL--~~rcp~l~~LDLSD-~  323 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAV------------------AHISETLTQLNLSGYRRNLQKSHLSTL--VRRCPNLVHLDLSD-S  323 (419)
T ss_pred             cCchHhhccchhhhHHH------------------hhhchhhhhhhhhhhHhhhhhhHHHHH--HHhCCceeeecccc-c
Confidence            66666543221100 01                  112245555566655422111 11111  34556666666665 4


Q ss_pred             Ccccc-cCccccccCCCCCCCCccceEEeccCCCcc-cccccCCCCCCccEEeeCCC
Q 018478          256 DDMVS-FPPEDIRMGTTLPLPTSLTSLAIFSFPNLE-RLSSSIVDLQNLTSLYLVGC  310 (355)
Q Consensus       256 ~~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~l~~~~~~~~~L~~L~l~~~  310 (355)
                      ..++. ...++       ..++.|++|.++.|..+. ..-..+.+.|.|.+|++.+|
T Consensus       324 v~l~~~~~~~~-------~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  324 VMLKNDCFQEF-------FKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             cccCchHHHHH-------HhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence            43321 11122       234556666666654433 11112355666666666665

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.19  E-value=3e-06  Score=56.19  Aligned_cols=57  Identities=23%  Similarity=0.414  Sum_probs=26.3

Q ss_pred             ccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccccc-cCCCCCCccEEeeCCC
Q 018478          245 SLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSS-SIVDLQNLTSLYLVGC  310 (355)
Q Consensus       245 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~  310 (355)
                      +|++|++++  +.+..++.+.+      ...++|++|++++ +.++.++. .+.++++|++|++++|
T Consensus         2 ~L~~L~l~~--n~l~~i~~~~f------~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    2 NLESLDLSN--NKLTEIPPDSF------SNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TESEEEETS--STESEECTTTT------TTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSS
T ss_pred             cCcEEECCC--CCCCccCHHHH------cCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCC
Confidence            445555554  24444444332      3344555555554 34444432 3344555555555444

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.13  E-value=1.1e-07  Score=81.08  Aligned_cols=159  Identities=17%  Similarity=0.191  Sum_probs=105.2

Q ss_pred             CCCccEEeecccccCcccccCccC--CCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhc
Q 018478            5 NSSLEILEIWSCRSLTYLAAVQLP--RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIF   82 (355)
Q Consensus         5 ~~~L~~L~l~~~~~l~~l~~~~~~--~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~   82 (355)
                      |..|+.|.+++. .+.+--...++  .+|+.|++++|+.+.......          ++..++.|.+|+++.|.-.+.. 
T Consensus       209 C~kLk~lSlEg~-~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~l----------l~~scs~L~~LNlsWc~l~~~~-  276 (419)
T KOG2120|consen  209 CSKLKNLSLEGL-RLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQL----------LLSSCSRLDELNLSWCFLFTEK-  276 (419)
T ss_pred             HHhhhhcccccc-ccCcHHHHHHhccccceeeccccccccchhHHHH----------HHHhhhhHhhcCchHhhccchh-
Confidence            455666777653 23221112233  789999999998777655443          3566899999999988654433 


Q ss_pred             cccccchhccccccCCCCCcccEEEEccCcch---hchhhhccCCCCCcEEEeeccCCcCc-ccccccCCCCCceEeccc
Q 018478           83 SKNELSATLESLEVGNLPPSLKSLRVQGCSKL---ESIAETLDNSTSLETIHIFYCENMKI-LPSGLHNLRQLQEISIEG  158 (355)
Q Consensus        83 ~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~  158 (355)
                          .+.     ......++|+.|+++++..-   ..+..-..+|++|.+|++++|-.+.. ....+.+++-|+++.++.
T Consensus       277 ----Vtv-----~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsR  347 (419)
T KOG2120|consen  277 ----VTV-----AVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSR  347 (419)
T ss_pred             ----hhH-----HHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhh
Confidence                111     11234578999999987532   22333346799999999999876653 345677889999999999


Q ss_pred             cCCCcC-CCCCCCCCCCcceEEEcccc
Q 018478          159 CGNLES-FPEGGLPCAKLKEVVIRWCG  184 (355)
Q Consensus       159 ~~~l~~-~~~~~~~~~~L~~L~l~~~~  184 (355)
                      |..+.. .--.+.+.+.|..|++.+|-
T Consensus       348 CY~i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  348 CYDIIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             hcCCChHHeeeeccCcceEEEEecccc
Confidence            865421 11245567899999999874

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.10  E-value=3e-06  Score=56.17  Aligned_cols=56  Identities=23%  Similarity=0.424  Sum_probs=31.7

Q ss_pred             cccEEEEccCcchhchh-hhccCCCCCcEEEeeccCCcCccc-ccccCCCCCceEecccc
Q 018478          102 SLKSLRVQGCSKLESIA-ETLDNSTSLETIHIFYCENMKILP-SGLHNLRQLQEISIEGC  159 (355)
Q Consensus       102 ~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~  159 (355)
                      +|++|++++|. +..+| ..|..+++|++|++++|. +..++ ..+.++++|+.|++++|
T Consensus         2 ~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    2 NLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TESEEEETSST-ESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSS
T ss_pred             cCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCC
Confidence            56666666654 55554 344556666666666555 44443 34555666666666554

...

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.09  E-value=7.6e-07  Score=77.66  Aligned_cols=230  Identities=17%  Similarity=0.164  Sum_probs=132.4

Q ss_pred             CCcccEEEEccCcchh----chhhhccCCCCCcEEEeeccC--Cc-Ccc-------cccccCCCCCceEeccccCCCcCC
Q 018478          100 PPSLKSLRVQGCSKLE----SIAETLDNSTSLETIHIFYCE--NM-KIL-------PSGLHNLRQLQEISIEGCGNLESF  165 (355)
Q Consensus       100 ~~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~--~~-~~~-------~~~~~~l~~L~~L~l~~~~~l~~~  165 (355)
                      ..+++++++++|....    .+.+.+.+-++|+.-++++--  +. ..+       .+.+..+++|+.++++.|-.-...
T Consensus        29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g  108 (382)
T KOG1909|consen   29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG  108 (382)
T ss_pred             cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence            4689999999998433    245566667788888877532  11 122       334556789999999997432223


Q ss_pred             CC----CCCCCCCcceEEEccccCcCccc--------------ccccCCCCCceEEEeecCcCCCC---------CCCCc
Q 018478          166 PE----GGLPCAKLKEVVIRWCGRLEALP--------------KGLHNLKSLQKLTIGKGGLEEDG---------LPTNL  218 (355)
Q Consensus       166 ~~----~~~~~~~L~~L~l~~~~~~~~~p--------------~~l~~~~~L~~L~l~~~~i~~~~---------~~~~L  218 (355)
                      ++    .+.++..|++|++.+|- +....              .-.+.-+.|+++..+.+.+.+.+         ..+.|
T Consensus       109 ~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~l  187 (382)
T KOG1909|consen  109 IRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTL  187 (382)
T ss_pred             hHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcccc
Confidence            22    34458899999999864 32211              12344567888877755444432         33677


Q ss_pred             cEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcc----cccc
Q 018478          219 HSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLE----RLSS  294 (355)
Q Consensus       219 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~----~l~~  294 (355)
                      +.+.+..|..-..-.......+..+++|+.|++..  +.++.-...  .+...+...++|+++.+++|.--.    .+..
T Consensus       188 eevr~~qN~I~~eG~~al~eal~~~~~LevLdl~D--Ntft~egs~--~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~  263 (382)
T KOG1909|consen  188 EEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRD--NTFTLEGSV--ALAKALSSWPHLRELNLGDCLLENEGAIAFVD  263 (382)
T ss_pred             ceEEEecccccCchhHHHHHHHHhCCcceeeeccc--chhhhHHHH--HHHHHhcccchheeecccccccccccHHHHHH
Confidence            77777776543322211112267778888888876  333221110  011112344578888888874222    1111


Q ss_pred             cC-CCCCCccEEeeCCCCCCcccCCC------CCCCCccEEEecCCch
Q 018478          295 SI-VDLQNLTSLYLVGCPKLKYFPEK------GLPSSLLELWIGGCPL  335 (355)
Q Consensus       295 ~~-~~~~~L~~L~l~~~~~l~~~~~~------~~~~~L~~L~l~~c~~  335 (355)
                      .+ ...|+|..|.+.+| .++.=...      .--|.|..|++.+|..
T Consensus       264 al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  264 ALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            11 45778888888887 45541110      0147888888887754

>PLN03150 hypothetical protein; Provisional

Probab=98.05  E-value=8.8e-06  Score=79.94  Aligned_cols=91  Identities=14%  Similarity=0.128  Sum_probs=43.2

Q ss_pred             ccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEcc
Q 018478          103 LKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRW  182 (355)
Q Consensus       103 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~  182 (355)
                      ++.|++++|.....+|..++.+++|+.|++++|.....+|..++.+++|+.|++++|.....+|..+..+++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            44445554442223444455555555555555543334444455555555555555433334444444555555555555


Q ss_pred             ccCcCcccccc
Q 018478          183 CGRLEALPKGL  193 (355)
Q Consensus       183 ~~~~~~~p~~l  193 (355)
                      |.....+|..+
T Consensus       500 N~l~g~iP~~l  510 (623)
T PLN03150        500 NSLSGRVPAAL  510 (623)
T ss_pred             CcccccCChHH
Confidence            44333444433

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.99  E-value=3.3e-06  Score=73.79  Aligned_cols=130  Identities=19%  Similarity=0.259  Sum_probs=75.4

Q ss_pred             CCcceEEEccccCcCccc-----ccccCCCCCceEEEeecCcCCC---------CCCCCccEEEecCCcchhhhhhhhcc
Q 018478          173 AKLKEVVIRWCGRLEALP-----KGLHNLKSLQKLTIGKGGLEED---------GLPTNLHSLDIRGNMEIWKSMIEWGQ  238 (355)
Q Consensus       173 ~~L~~L~l~~~~~~~~~p-----~~l~~~~~L~~L~l~~~~i~~~---------~~~~~L~~L~l~~~~~~~~~~~~~~~  238 (355)
                      ++|+.+..+.| ++.+.+     ..+...+.|+.+.+..+.|-..         ..+++|+.||+.+|............
T Consensus       157 ~~Lrv~i~~rN-rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak  235 (382)
T KOG1909|consen  157 PKLRVFICGRN-RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK  235 (382)
T ss_pred             cceEEEEeecc-ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence            46666666653 333322     2455566777777764444322         24577777788777644433322222


Q ss_pred             cCCCCCccceeEecccCCccc----ccCccccccCCCCCCCCccceEEeccCCCcc-----cccccCCCCCCccEEeeCC
Q 018478          239 GFHRFSSLRELRIEGCDDDMV----SFPPEDIRMGTTLPLPTSLTSLAIFSFPNLE-----RLSSSIVDLQNLTSLYLVG  309 (355)
Q Consensus       239 ~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-----~l~~~~~~~~~L~~L~l~~  309 (355)
                      .+..+++|+.++++. |.--.    .+...+-      ...++|+.+.+.+| .++     .+...+...|.|..|++.+
T Consensus       236 aL~s~~~L~El~l~d-cll~~~Ga~a~~~al~------~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLng  307 (382)
T KOG1909|consen  236 ALSSWPHLRELNLGD-CLLENEGAIAFVDALK------ESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNG  307 (382)
T ss_pred             Hhcccchheeecccc-cccccccHHHHHHHHh------ccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCc
Confidence            256677888888888 64311    1111110      23568888988884 444     2333446688999999999


Q ss_pred             CC
Q 018478          310 CP  311 (355)
Q Consensus       310 ~~  311 (355)
                      |+
T Consensus       308 N~  309 (382)
T KOG1909|consen  308 NR  309 (382)
T ss_pred             cc
Confidence            83

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.86  E-value=2.4e-07  Score=87.98  Aligned_cols=120  Identities=24%  Similarity=0.260  Sum_probs=84.7

Q ss_pred             cccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEc
Q 018478          102 SLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIR  181 (355)
Q Consensus       102 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~  181 (355)
                      .|...+.++|. +..+...+.-++.|+.|+++.|. ++... .+..++.|+.|+++.| .+..+|..-..--.|+.|.+.
T Consensus       165 ~L~~a~fsyN~-L~~mD~SLqll~ale~LnLshNk-~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~L~~L~lr  240 (1096)
T KOG1859|consen  165 KLATASFSYNR-LVLMDESLQLLPALESLNLSHNK-FTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCKLQLLNLR  240 (1096)
T ss_pred             hHhhhhcchhh-HHhHHHHHHHHHHhhhhccchhh-hhhhH-HHHhcccccccccccc-hhccccccchhhhhheeeeec
Confidence            56677777766 77777777778889999999877 55543 6777888999999886 677777533332248888888


Q ss_pred             cccCcCcccccccCCCCCceEEEeecCcCC------CCCCCCccEEEecCCc
Q 018478          182 WCGRLEALPKGLHNLKSLQKLTIGKGGLEE------DGLPTNLHSLDIRGNM  227 (355)
Q Consensus       182 ~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~------~~~~~~L~~L~l~~~~  227 (355)
                      +| .++.+ .++.++++|+.|+++.+.+..      .+.+..|+.|++.||+
T Consensus       241 nN-~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  241 NN-ALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             cc-HHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence            85 45554 477888888888888443332      3344677788888776

>PLN03150 hypothetical protein; Provisional

Probab=97.84  E-value=4.1e-05  Score=75.32  Aligned_cols=91  Identities=20%  Similarity=0.173  Sum_probs=74.0

Q ss_pred             CCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCC-CCCcc
Q 018478           98 NLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLP-CAKLK  176 (355)
Q Consensus        98 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~-~~~L~  176 (355)
                      ..+++|+.|++++|.....+|..++.+++|+.|++++|.....+|..++++++|+.|++++|.....+|..+.. ..++.
T Consensus       439 ~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~  518 (623)
T PLN03150        439 SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRA  518 (623)
T ss_pred             hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCc
Confidence            45589999999999844578888999999999999999866788999999999999999998655677776554 24667


Q ss_pred             eEEEccccCcCc
Q 018478          177 EVVIRWCGRLEA  188 (355)
Q Consensus       177 ~L~l~~~~~~~~  188 (355)
                      .+++.+|..+..
T Consensus       519 ~l~~~~N~~lc~  530 (623)
T PLN03150        519 SFNFTDNAGLCG  530 (623)
T ss_pred             eEEecCCccccC
Confidence            888888765443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.84  E-value=2e-06  Score=80.54  Aligned_cols=190  Identities=22%  Similarity=0.302  Sum_probs=115.9

Q ss_pred             CCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcce
Q 018478           98 NLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKE  177 (355)
Q Consensus        98 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~  177 (355)
                      ..+.+|+.+++.+|. +..+...+..+++|++|++++|. ++.+. .+..++.|+.|++.+| .+..+. .+..+++|+.
T Consensus        92 ~~~~~l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~N~-I~~i~-~l~~l~~L~~L~l~~N-~i~~~~-~~~~l~~L~~  166 (414)
T KOG0531|consen   92 SKLKSLEALDLYDNK-IEKIENLLSSLVNLQVLDLSFNK-ITKLE-GLSTLTLLKELNLSGN-LISDIS-GLESLKSLKL  166 (414)
T ss_pred             ccccceeeeeccccc-hhhcccchhhhhcchheeccccc-ccccc-chhhccchhhheeccC-cchhcc-CCccchhhhc
Confidence            445788999998887 76665546678899999999877 66553 4566777889999887 555553 3444778888


Q ss_pred             EEEccccCcCccccc-ccCCCCCceEEEeecCcCCCC---CCCCccEEEecCCcchhhhhhhhcccCCCCCc--cceeEe
Q 018478          178 VVIRWCGRLEALPKG-LHNLKSLQKLTIGKGGLEEDG---LPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSS--LRELRI  251 (355)
Q Consensus       178 L~l~~~~~~~~~p~~-l~~~~~L~~L~l~~~~i~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~--L~~L~l  251 (355)
                      +++++|. +..+... ...+.+++.+++..+.+....   ....+..+++.++.......      +..+..  |+.+++
T Consensus       167 l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~------l~~~~~~~L~~l~l  239 (414)
T KOG0531|consen  167 LDLSYNR-IVDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEG------LNELVMLHLRELYL  239 (414)
T ss_pred             ccCCcch-hhhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccC------cccchhHHHHHHhc
Confidence            8888854 4443322 467778888888755554433   22334444555544322111      233333  788888


Q ss_pred             cccCCcccccCccccccCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEeeCCC
Q 018478          252 EGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGC  310 (355)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~  310 (355)
                      ++  +.+..++...       .....+..+++.+ +.+..+.. +...+.+..+...++
T Consensus       240 ~~--n~i~~~~~~~-------~~~~~l~~l~~~~-n~~~~~~~-~~~~~~~~~~~~~~~  287 (414)
T KOG0531|consen  240 SG--NRISRSPEGL-------ENLKNLPVLDLSS-NRISNLEG-LERLPKLSELWLNDN  287 (414)
T ss_pred             cc--Cccccccccc-------cccccccccchhh-cccccccc-ccccchHHHhccCcc
Confidence            87  5665553323       3556777788777 44443321 234444555555444

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.77  E-value=2.5e-06  Score=81.41  Aligned_cols=241  Identities=22%  Similarity=0.302  Sum_probs=116.5

Q ss_pred             cccccEEEecCCCccchhccccccchhccccccCCCCCcccEEEEccC-cchhch----hhhccCCCCCcEEEeeccCCc
Q 018478           64 SYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQGC-SKLESI----AETLDNSTSLETIHIFYCENM  138 (355)
Q Consensus        64 ~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~----~~~~~~l~~L~~L~l~~~~~~  138 (355)
                      ++.|+.+.+.+|..+...-    ..      +.....++|+.|+++++ ......    ......+++|+.|++..+..+
T Consensus       187 ~~~L~~l~l~~~~~~~~~~----~~------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~i  256 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDS----LD------ALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLV  256 (482)
T ss_pred             CchhhHhhhcccccCChhh----HH------HHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhcc
Confidence            5666666666665554420    00      22344567777777662 212111    122334677777777776644


Q ss_pred             Ccc--cccccCCCCCceEeccccCCCcC--CCCCCCCCCCcceEEEccccCcCc--ccccccCCCCCceEEEeecCcCCC
Q 018478          139 KIL--PSGLHNLRQLQEISIEGCGNLES--FPEGGLPCAKLKEVVIRWCGRLEA--LPKGLHNLKSLQKLTIGKGGLEED  212 (355)
Q Consensus       139 ~~~--~~~~~~l~~L~~L~l~~~~~l~~--~~~~~~~~~~L~~L~l~~~~~~~~--~p~~l~~~~~L~~L~l~~~~i~~~  212 (355)
                      +..  ......+++|+.|.+.+|..++.  +-.....+++|++|++++|..+++  +......+++++.|.+..     .
T Consensus       257 sd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~-----~  331 (482)
T KOG1947|consen  257 TDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS-----L  331 (482)
T ss_pred             CchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh-----c
Confidence            432  11122266777777666654322  112233356777777777766533  112233455555544320     0


Q ss_pred             CCCCCccEEEecCCcchh-hhhhhhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCc-c
Q 018478          213 GLPTNLHSLDIRGNMEIW-KSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNL-E  290 (355)
Q Consensus       213 ~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l-~  290 (355)
                      .....++.+.+.++.... +......  +..+++++.+.+.. |. .....                ..+.+.+|+.+ .
T Consensus       332 ~~c~~l~~~~l~~~~~~~~d~~~~~~--~~~~~~l~~~~l~~-~~-~~~~~----------------~~~~l~gc~~l~~  391 (482)
T KOG1947|consen  332 NGCPSLTDLSLSGLLTLTSDDLAELI--LRSCPKLTDLSLSY-CG-ISDLG----------------LELSLRGCPNLTE  391 (482)
T ss_pred             CCCccHHHHHHHHhhccCchhHhHHH--HhcCCCcchhhhhh-hh-ccCcc----------------hHHHhcCCcccch
Confidence            002344444444333222 1222222  55666666666666 43 22211                03345556655 3


Q ss_pred             cccccCCCCCCccEEeeCCCCCCcccCCCC--C-CCCccEEEecCCchhhHh
Q 018478          291 RLSSSIVDLQNLTSLYLVGCPKLKYFPEKG--L-PSSLLELWIGGCPLIEEK  339 (355)
Q Consensus       291 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~--~-~~~L~~L~l~~c~~l~~~  339 (355)
                      .+........+++.|.+..|..++.-....  . +..++.+++.+|+.+...
T Consensus       392 ~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~  443 (482)
T KOG1947|consen  392 SLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLK  443 (482)
T ss_pred             HHHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccch
Confidence            333222344447777777775444322211  1 456677777777665554

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.75  E-value=5.3e-05  Score=46.25  Aligned_cols=39  Identities=18%  Similarity=0.302  Sum_probs=26.0

Q ss_pred             CcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcc
Q 018478          101 PSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKIL  141 (355)
Q Consensus       101 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  141 (355)
                      ++|++|++++|. ++.+|+.++++++|+.|++++|+ ++.+
T Consensus         1 ~~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~-i~~i   39 (44)
T PF12799_consen    1 KNLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNP-ISDI   39 (44)
T ss_dssp             TT-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSC-CSBE
T ss_pred             CcceEEEccCCC-CcccCchHhCCCCCCEEEecCCC-CCCC
Confidence            357777777776 66777667777777777777776 5544

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.68  E-value=5.9e-05  Score=46.03  Aligned_cols=40  Identities=20%  Similarity=0.326  Sum_probs=31.1

Q ss_pred             CccceEEeccCCCcccccccCCCCCCccEEeeCCCCCCcccC
Q 018478          276 TSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFP  317 (355)
Q Consensus       276 ~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~  317 (355)
                      ++|++|++++ +.++.+|..+..+++|+.|++++| ++++++
T Consensus         1 ~~L~~L~l~~-N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSN-NQITDLPPELSNLPNLETLNLSNN-PISDIS   40 (44)
T ss_dssp             TT-SEEEETS-SS-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred             CcceEEEccC-CCCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence            4688888888 688888877888999999999888 677765

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.67  E-value=4.8e-06  Score=77.98  Aligned_cols=144  Identities=17%  Similarity=0.180  Sum_probs=83.7

Q ss_pred             CCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCC-CCCCCCcc
Q 018478           98 NLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEG-GLPCAKLK  176 (355)
Q Consensus        98 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~  176 (355)
                      ..+++|+.|++++|. +..+. .+..++.|+.|++.+|. +..+. .+..+++|+.+++++| .+..+... ...+.+++
T Consensus       115 ~~~~~L~~L~ls~N~-I~~i~-~l~~l~~L~~L~l~~N~-i~~~~-~~~~l~~L~~l~l~~n-~i~~ie~~~~~~~~~l~  189 (414)
T KOG0531|consen  115 SSLVNLQVLDLSFNK-ITKLE-GLSTLTLLKELNLSGNL-ISDIS-GLESLKSLKLLDLSYN-RIVDIENDELSELISLE  189 (414)
T ss_pred             hhhhcchheeccccc-ccccc-chhhccchhhheeccCc-chhcc-CCccchhhhcccCCcc-hhhhhhhhhhhhccchH
Confidence            445788888888877 65553 34556778888888877 55553 3455778888888876 34433321 34567788


Q ss_pred             eEEEccccCcCcccccccCCCCCceEEEeecCcCCCCCC---CC--ccEEEecCCcchhhhhhhhcccCCCCCccceeEe
Q 018478          177 EVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEEDGLP---TN--LHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRI  251 (355)
Q Consensus       177 ~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~~~~~---~~--L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l  251 (355)
                      .+++.+|. +..+ ..+..+..+..+.+..+.+......   ..  |+.+++.+++......   .  +..+..+..+++
T Consensus       190 ~l~l~~n~-i~~i-~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~~~~---~--~~~~~~l~~l~~  262 (414)
T KOG0531|consen  190 ELDLGGNS-IREI-EGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISRSPE---G--LENLKNLPVLDL  262 (414)
T ss_pred             HHhccCCc-hhcc-cchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCccccccc---c--ccccccccccch
Confidence            88887753 2222 2333333444444443444432221   22  6777777776433211   1  556677777777


Q ss_pred             cc
Q 018478          252 EG  253 (355)
Q Consensus       252 ~~  253 (355)
                      ..
T Consensus       263 ~~  264 (414)
T KOG0531|consen  263 SS  264 (414)
T ss_pred             hh
Confidence            76

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.60  E-value=2.8e-05  Score=76.61  Aligned_cols=126  Identities=20%  Similarity=0.214  Sum_probs=78.1

Q ss_pred             CcccEEEEccCcchh-chhhhcc-CCCCCcEEEeeccCCcC-cccccccCCCCCceEeccccCCCcCCCCCCCCCCCcce
Q 018478          101 PSLKSLRVQGCSKLE-SIAETLD-NSTSLETIHIFYCENMK-ILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKE  177 (355)
Q Consensus       101 ~~L~~L~l~~~~~~~-~~~~~~~-~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~  177 (355)
                      .+|+.|++++...+. ..|..++ .+|+|++|.+.+-.... ++.....++++|..||++++ +++.+ .++..+++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHHH
Confidence            468888888755333 3344443 47888888888744221 23344556888888888885 66666 56777888888


Q ss_pred             EEEccccCcCccc--ccccCCCCCceEEEeecCcC-----------CCCCCCCccEEEecCCcch
Q 018478          178 VVIRWCGRLEALP--KGLHNLKSLQKLTIGKGGLE-----------EDGLPTNLHSLDIRGNMEI  229 (355)
Q Consensus       178 L~l~~~~~~~~~p--~~l~~~~~L~~L~l~~~~i~-----------~~~~~~~L~~L~l~~~~~~  229 (355)
                      |.+.+-. ++...  ..+..+++|++|+++.....           ....+|+|+.||.++...-
T Consensus       200 L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  200 LSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             HhccCCC-CCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            8776632 22211  36677888888888721111           1234567777777765433

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.56  E-value=9.2e-06  Score=77.53  Aligned_cols=62  Identities=29%  Similarity=0.516  Sum_probs=29.3

Q ss_pred             CcccEEEEccCcchhc--hhhhccCCCCCcEEEeeccCCcCc--ccccccCCCCCceEeccccCCC
Q 018478          101 PSLKSLRVQGCSKLES--IAETLDNSTSLETIHIFYCENMKI--LPSGLHNLRQLQEISIEGCGNL  162 (355)
Q Consensus       101 ~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~l  162 (355)
                      ++|+.++++.+..++.  +......|++|++|.+..|..++.  +......+++|+.|++++|..+
T Consensus       243 ~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  243 RKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             CCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence            5566666655543332  112222355666666555553322  2223334555666666655443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.33  E-value=0.00047  Score=59.50  Aligned_cols=183  Identities=15%  Similarity=0.154  Sum_probs=97.9

Q ss_pred             CCCCCcEEEeeccCCcCc---ccccccCCCCCceEeccccCCCcCCCCCC-CCCCCcceEEEccccCc-CcccccccCCC
Q 018478          123 NSTSLETIHIFYCENMKI---LPSGLHNLRQLQEISIEGCGNLESFPEGG-LPCAKLKEVVIRWCGRL-EALPKGLHNLK  197 (355)
Q Consensus       123 ~l~~L~~L~l~~~~~~~~---~~~~~~~l~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~l~~~~~~-~~~p~~l~~~~  197 (355)
                      .++.++++++.+|. +..   +...+.++|.|+.|+++.|+ +....... .+..+|+.+.+.+...- +..-..+..++
T Consensus        69 ~~~~v~elDL~~N~-iSdWseI~~ile~lP~l~~LNls~N~-L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP  146 (418)
T KOG2982|consen   69 SVTDVKELDLTGNL-ISDWSEIGAILEQLPALTTLNLSCNS-LSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP  146 (418)
T ss_pred             Hhhhhhhhhcccch-hccHHHHHHHHhcCccceEeeccCCc-CCCccccCcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence            46677777777765 332   33445567777777777653 22211111 34567777777763210 11112345566


Q ss_pred             CCceEEEeecC---c--CCC---CCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCccccccC
Q 018478          198 SLQKLTIGKGG---L--EED---GLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMG  269 (355)
Q Consensus       198 ~L~~L~l~~~~---i--~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  269 (355)
                      .++.|+++.+.   +  .+.   ...+.++++.+..|....-...  ....+.+|++..+.+.. |+ +.+...+-    
T Consensus       147 ~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~--~~l~r~Fpnv~sv~v~e-~P-lK~~s~ek----  218 (418)
T KOG2982|consen  147 KVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNK--NKLSRIFPNVNSVFVCE-GP-LKTESSEK----  218 (418)
T ss_pred             hhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHH--HhHHhhcccchheeeec-Cc-ccchhhcc----
Confidence            66777666331   1  111   1234666666666642221111  01134568888888877 43 22222211    


Q ss_pred             CCCCCCCccceEEeccCCCcccccc--cCCCCCCccEEeeCCCCCCcccC
Q 018478          270 TTLPLPTSLTSLAIFSFPNLERLSS--SIVDLQNLTSLYLVGCPKLKYFP  317 (355)
Q Consensus       270 ~~~~~~~~L~~L~l~~~~~l~~l~~--~~~~~~~L~~L~l~~~~~l~~~~  317 (355)
                       ....++.+..|.++. +++..+.+  .+.+++.|.-|.+.++|-...+.
T Consensus       219 -~se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~  266 (418)
T KOG2982|consen  219 -GSEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPLR  266 (418)
T ss_pred             -cCCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCccccccc
Confidence             113456666777776 56665543  35778888888888887555443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.24  E-value=0.00016  Score=71.32  Aligned_cols=132  Identities=20%  Similarity=0.201  Sum_probs=80.0

Q ss_pred             CCcceEecccCccc-cccccccCcCCCCCCCccccccccccEEEecCCCccchhccccccchhccccccCCCCCcccEEE
Q 018478           29 RSLKRLDIQCCSNI-RTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLR  107 (355)
Q Consensus        29 ~~L~~L~l~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~~~~~~L~~L~  107 (355)
                      .+|++|+++|...+ ..++...+           ..+|.|++|.+.+- .+..-    ++...      ...+|+|..||
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig-----------~~LPsL~sL~i~~~-~~~~~----dF~~l------c~sFpNL~sLD  179 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIG-----------TMLPSLRSLVISGR-QFDND----DFSQL------CASFPNLRSLD  179 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHh-----------hhCcccceEEecCc-eecch----hHHHH------hhccCccceee
Confidence            67888888884432 24444432           33888888888763 22111    11111      13457889999


Q ss_pred             EccCcchhchhhhccCCCCCcEEEeeccCCcC-cccccccCCCCCceEeccccCCCcCC--C----CCCCCCCCcceEEE
Q 018478          108 VQGCSKLESIAETLDNSTSLETIHIFYCENMK-ILPSGLHNLRQLQEISIEGCGNLESF--P----EGGLPCAKLKEVVI  180 (355)
Q Consensus       108 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~l~~~--~----~~~~~~~~L~~L~l  180 (355)
                      ++++. ++.+ .+++++++|+.|.+.+-.... ..-.++.++++|+.||++.-.....-  .    +-...+|+|+.|+.
T Consensus       180 IS~Tn-I~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDc  257 (699)
T KOG3665|consen  180 ISGTN-ISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDC  257 (699)
T ss_pred             cCCCC-ccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEec
Confidence            98877 6666 577888888888877644222 11235677888888888874332211  0    11222678888888


Q ss_pred             cccc
Q 018478          181 RWCG  184 (355)
Q Consensus       181 ~~~~  184 (355)
                      +++.
T Consensus       258 SgTd  261 (699)
T KOG3665|consen  258 SGTD  261 (699)
T ss_pred             CCcc
Confidence            8753

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.09  E-value=0.00032  Score=60.47  Aligned_cols=195  Identities=17%  Similarity=0.110  Sum_probs=107.2

Q ss_pred             CCCcccEEEEccCcchhc---hhhhccCCCCCcEEEeeccCCcCcccccc-cCCCCCceEeccccCCCcC-CCCCCCCCC
Q 018478           99 LPPSLKSLRVQGCSKLES---IAETLDNSTSLETIHIFYCENMKILPSGL-HNLRQLQEISIEGCGNLES-FPEGGLPCA  173 (355)
Q Consensus        99 ~~~~L~~L~l~~~~~~~~---~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~l~~-~~~~~~~~~  173 (355)
                      ....++.+|+.+|. +..   +-..+..+|.|+.|+++.|+ +....+.. ....+|+.+.+.+..--.. .......+|
T Consensus        69 ~~~~v~elDL~~N~-iSdWseI~~ile~lP~l~~LNls~N~-L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP  146 (418)
T KOG2982|consen   69 SVTDVKELDLTGNL-ISDWSEIGAILEQLPALTTLNLSCNS-LSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP  146 (418)
T ss_pred             Hhhhhhhhhcccch-hccHHHHHHHHhcCccceEeeccCCc-CCCccccCcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence            34678999999987 543   44556789999999999887 43322222 2456888888876422111 112233367


Q ss_pred             CcceEEEccccCcCcc---ccccc-CCCCCceEEEe------ecCcC-CCCCCCCccEEEecCCcchhhhhhhhcccCCC
Q 018478          174 KLKEVVIRWCGRLEAL---PKGLH-NLKSLQKLTIG------KGGLE-EDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHR  242 (355)
Q Consensus       174 ~L~~L~l~~~~~~~~~---p~~l~-~~~~L~~L~l~------~~~i~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  242 (355)
                      .+++|+++.|+. ..+   .+-.. .-+.+++|+..      ...+. -....+++..+-+..|+..+.... ..  ...
T Consensus       147 ~vtelHmS~N~~-rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~e-k~--se~  222 (418)
T KOG2982|consen  147 KVTELHMSDNSL-RQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSE-KG--SEP  222 (418)
T ss_pred             hhhhhhhccchh-hhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhc-cc--CCC
Confidence            788888887621 110   01111 11234444333      00111 123457888888888874443332 23  566


Q ss_pred             CCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccccc------cCCCCCCccEEe
Q 018478          243 FSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSS------SIVDLQNLTSLY  306 (355)
Q Consensus       243 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~------~~~~~~~L~~L~  306 (355)
                      ++.+..|+++.  +++.+...     ..++..+++|.-|.+.+.+-...+..      -++.+++++.|+
T Consensus       223 ~p~~~~LnL~~--~~idswas-----vD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN  285 (418)
T KOG2982|consen  223 FPSLSCLNLGA--NNIDSWAS-----VDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN  285 (418)
T ss_pred             CCcchhhhhcc--cccccHHH-----HHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence            77777788876  44433221     01124667888888887655444432      124455555554

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.98  E-value=0.0018  Score=52.86  Aligned_cols=81  Identities=12%  Similarity=0.216  Sum_probs=54.1

Q ss_pred             CCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccC-CCCCceEeccccCCCcCCC--CCCCCCCCcc
Q 018478          100 PPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHN-LRQLQEISIEGCGNLESFP--EGGLPCAKLK  176 (355)
Q Consensus       100 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-l~~L~~L~l~~~~~l~~~~--~~~~~~~~L~  176 (355)
                      ..+...+|+++|+ +..++ .+..++.|..|.+..|. +..+...+.. +++|+.|.+.+| .+..+.  +....|++|+
T Consensus        41 ~d~~d~iDLtdNd-l~~l~-~lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~  116 (233)
T KOG1644|consen   41 LDQFDAIDLTDND-LRKLD-NLPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLE  116 (233)
T ss_pred             ccccceecccccc-hhhcc-cCCCccccceEEecCCc-ceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccc
Confidence            3567888888887 44332 35567888888888877 5555443433 577888888876 555443  2345577888


Q ss_pred             eEEEcccc
Q 018478          177 EVVIRWCG  184 (355)
Q Consensus       177 ~L~l~~~~  184 (355)
                      .|.+.+|+
T Consensus       117 ~Ltll~Np  124 (233)
T KOG1644|consen  117 YLTLLGNP  124 (233)
T ss_pred             eeeecCCc
Confidence            88888764

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.96  E-value=0.0017  Score=52.93  Aligned_cols=103  Identities=17%  Similarity=0.214  Sum_probs=75.8

Q ss_pred             CCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccccc-
Q 018478          216 TNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSS-  294 (355)
Q Consensus       216 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-  294 (355)
                      .+...+|+++|..... ..     +..+++|.+|.+.+  ++++.+.+.+.      ...+.|+.|.+.+ +++..+.+ 
T Consensus        42 d~~d~iDLtdNdl~~l-~~-----lp~l~rL~tLll~n--NrIt~I~p~L~------~~~p~l~~L~Ltn-Nsi~~l~dl  106 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKL-DN-----LPHLPRLHTLLLNN--NRITRIDPDLD------TFLPNLKTLILTN-NSIQELGDL  106 (233)
T ss_pred             cccceecccccchhhc-cc-----CCCccccceEEecC--Ccceeeccchh------hhccccceEEecC-cchhhhhhc
Confidence            4666788888875432 21     77889999999988  88888887664      4667899999998 67776644 


Q ss_pred             -cCCCCCCccEEeeCCCCCCcccCC-CC--C--CCCccEEEecCCc
Q 018478          295 -SIVDLQNLTSLYLVGCPKLKYFPE-KG--L--PSSLLELWIGGCP  334 (355)
Q Consensus       295 -~~~~~~~L~~L~l~~~~~l~~~~~-~~--~--~~~L~~L~l~~c~  334 (355)
                       ....+|.|++|.+-+++ +++-.. ..  +  +|+|+.||+.+-.
T Consensus       107 ~pLa~~p~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  107 DPLASCPKLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             chhccCCccceeeecCCc-hhcccCceeEEEEecCcceEeehhhhh
Confidence             34789999999999984 554432 11  1  6999999987654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.76  E-value=6.1e-05  Score=64.15  Aligned_cols=99  Identities=19%  Similarity=0.162  Sum_probs=72.1

Q ss_pred             cccccEEEecCCCccchhccccccchhccccccCCCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCccc-
Q 018478           64 SYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILP-  142 (355)
Q Consensus        64 ~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-  142 (355)
                      +.+.+.|++.+| .+.++             .....++.|+.|.|+.|. ++.+.+ +.+|++|++|++..|. +..+. 
T Consensus        18 l~~vkKLNcwg~-~L~DI-------------sic~kMp~lEVLsLSvNk-IssL~p-l~rCtrLkElYLRkN~-I~sldE   80 (388)
T KOG2123|consen   18 LENVKKLNCWGC-GLDDI-------------SICEKMPLLEVLSLSVNK-ISSLAP-LQRCTRLKELYLRKNC-IESLDE   80 (388)
T ss_pred             HHHhhhhcccCC-CccHH-------------HHHHhcccceeEEeeccc-cccchh-HHHHHHHHHHHHHhcc-cccHHH
Confidence            667888888887 56676             555566889999999887 776643 6679999999999877 55542 


Q ss_pred             -ccccCCCCCceEeccccCCCcCCCC-----CCCCCCCcceEE
Q 018478          143 -SGLHNLRQLQEISIEGCGNLESFPE-----GGLPCAKLKEVV  179 (355)
Q Consensus       143 -~~~~~l~~L~~L~l~~~~~l~~~~~-----~~~~~~~L~~L~  179 (355)
                       ..+.++++|+.|.+..|+....-+.     .+..++||++|+
T Consensus        81 L~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   81 LEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence             3567789999999988876654433     223367788776

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.56  E-value=0.00015  Score=69.57  Aligned_cols=189  Identities=22%  Similarity=0.278  Sum_probs=111.1

Q ss_pred             CCCCcEEEeeccCCcCcc-cccccCCCCCceEeccccCCCcCCCCCCCCC-CCcceEEEccccCcCcccccc-------c
Q 018478          124 STSLETIHIFYCENMKIL-PSGLHNLRQLQEISIEGCGNLESFPEGGLPC-AKLKEVVIRWCGRLEALPKGL-------H  194 (355)
Q Consensus       124 l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~-~~L~~L~l~~~~~~~~~p~~l-------~  194 (355)
                      +++++.+.+-.-+.-.-. |-.+..+.+|+.|.+.+|+ +.. ..++..+ ..|++|.=++  .++.+...|       .
T Consensus        83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~-L~~-~~GL~~lr~qLe~LIC~~--Sl~Al~~v~ascggd~~  158 (1096)
T KOG1859|consen   83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCD-LST-AKGLQELRHQLEKLICHN--SLDALRHVFASCGGDIS  158 (1096)
T ss_pred             HhhheeeeecccCCCCCCCCceeccccceeeEEecCcc-hhh-hhhhHHHHHhhhhhhhhc--cHHHHHHHHHHhccccc
Confidence            455556655443322111 4456667888899888874 322 1222221 2444443211  111111111       0


Q ss_pred             C---CCCCceEEEeecCcCC----CCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCccccc
Q 018478          195 N---LKSLQKLTIGKGGLEE----DGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIR  267 (355)
Q Consensus       195 ~---~~~L~~L~l~~~~i~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~  267 (355)
                      +   .-.|.+.+.+.+.+..    ..+.+.++.|++++|...+...      +..++.|++||+++  +.+..+|.-.  
T Consensus       159 ns~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~------Lr~l~~LkhLDlsy--N~L~~vp~l~--  228 (1096)
T KOG1859|consen  159 NSPVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDN------LRRLPKLKHLDLSY--NCLRHVPQLS--  228 (1096)
T ss_pred             cchhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHH------HHhccccccccccc--chhccccccc--
Confidence            0   1134444444333332    3456899999999987554332      77899999999998  5566666422  


Q ss_pred             cCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEeeCCCCCCcccCCCC---CCCCccEEEecCCc
Q 018478          268 MGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPEKG---LPSSLLELWIGGCP  334 (355)
Q Consensus       268 ~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~---~~~~L~~L~l~~c~  334 (355)
                           ..-..|+.|.+++ +.++.+-. +.++.+|..|++++| -|.....-.   .+..|+.|++.++|
T Consensus       229 -----~~gc~L~~L~lrn-N~l~tL~g-ie~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  229 -----MVGCKLQLLNLRN-NALTTLRG-IENLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             -----hhhhhheeeeecc-cHHHhhhh-HHhhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCc
Confidence                 2234699999998 77777643 578999999999987 344432211   25788999999887

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=96.42  E-value=0.0003  Score=53.71  Aligned_cols=78  Identities=14%  Similarity=0.182  Sum_probs=46.5

Q ss_pred             cccEEEEccCcchhchhhhcc-CCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEE
Q 018478          102 SLKSLRVQGCSKLESIAETLD-NSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVI  180 (355)
Q Consensus       102 ~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l  180 (355)
                      .|+..++++|. ++.+|+.|. ..+.++.|++.+|. +.++|.++..++.|+.++++.| .+..+|+.+.++.++-.|+.
T Consensus        54 el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~~Lds  130 (177)
T KOG4579|consen   54 ELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLRFN-PLNAEPRVIAPLIKLDMLDS  130 (177)
T ss_pred             eEEEEecccch-hhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcccccC-ccccchHHHHHHHhHHHhcC
Confidence            56666666665 565655443 34466666666655 6666666666666666666665 45555655555555555555


Q ss_pred             cc
Q 018478          181 RW  182 (355)
Q Consensus       181 ~~  182 (355)
                      -+
T Consensus       131 ~~  132 (177)
T KOG4579|consen  131 PE  132 (177)
T ss_pred             CC
Confidence            44

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=95.89  E-value=0.00065  Score=51.90  Aligned_cols=100  Identities=21%  Similarity=0.291  Sum_probs=75.6

Q ss_pred             cccEEEEccCcchhchh---hhccCCCCCcEEEeeccCCcCcccccccC-CCCCceEeccccCCCcCCCCCCCCCCCcce
Q 018478          102 SLKSLRVQGCSKLESIA---ETLDNSTSLETIHIFYCENMKILPSGLHN-LRQLQEISIEGCGNLESFPEGGLPCAKLKE  177 (355)
Q Consensus       102 ~L~~L~l~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~  177 (355)
                      .+..++++.|. +..++   ..+.+-..|...++++|. +..+|+.+.. ++..+.+++++| .+.++|+.+..++.|+.
T Consensus        28 E~h~ldLssc~-lm~i~davy~l~~~~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~  104 (177)
T KOG4579|consen   28 ELHFLDLSSCQ-LMYIADAVYMLSKGYELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRS  104 (177)
T ss_pred             Hhhhcccccch-hhHHHHHHHHHhCCceEEEEecccch-hhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhh
Confidence            46788999987 55444   445667788888999988 7777765543 557899999986 78899988888999999


Q ss_pred             EEEccccCcCcccccccCCCCCceEEEe
Q 018478          178 VVIRWCGRLEALPKGLHNLKSLQKLTIG  205 (355)
Q Consensus       178 L~l~~~~~~~~~p~~l~~~~~L~~L~l~  205 (355)
                      +.+..| .+...|..+..+.++..|+..
T Consensus       105 lNl~~N-~l~~~p~vi~~L~~l~~Lds~  131 (177)
T KOG4579|consen  105 LNLRFN-PLNAEPRVIAPLIKLDMLDSP  131 (177)
T ss_pred             cccccC-ccccchHHHHHHHhHHHhcCC
Confidence            999985 455667777667776666554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.51  E-value=0.00095  Score=57.10  Aligned_cols=40  Identities=28%  Similarity=0.220  Sum_probs=22.7

Q ss_pred             CCCCcccEEEEccCcchhchh--hhccCCCCCcEEEeeccCCc
Q 018478           98 NLPPSLKSLRVQGCSKLESIA--ETLDNSTSLETIHIFYCENM  138 (355)
Q Consensus        98 ~~~~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~  138 (355)
                      ..+..|+.|+|..|. +..+.  .++.++|+|+.|.+..|+-.
T Consensus        60 ~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL~ENPCc  101 (388)
T KOG2123|consen   60 QRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWLDENPCC  101 (388)
T ss_pred             HHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhhccCCcc
Confidence            344556666666655 44433  34556666666666666643

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=95.45  E-value=0.0069  Score=51.83  Aligned_cols=151  Identities=17%  Similarity=0.167  Sum_probs=83.9

Q ss_pred             CCcccEEEEccCcchhc----hhhhccCCCCCcEEEeeccC--Cc-C-------cccccccCCCCCceEeccccCCCcCC
Q 018478          100 PPSLKSLRVQGCSKLES----IAETLDNSTSLETIHIFYCE--NM-K-------ILPSGLHNLRQLQEISIEGCGNLESF  165 (355)
Q Consensus       100 ~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~--~~-~-------~~~~~~~~l~~L~~L~l~~~~~l~~~  165 (355)
                      +..+..+++++|...+.    +...+.+-.+|+..++++--  .. +       .+.+.+..||.|+..+++.|-.-..+
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            46789999999984443    33444555677777766522  11 1       12345667899999999987544444


Q ss_pred             CC----CCCCCCCcceEEEccccCcCcccc-----c---------ccCCCCCceEEEeecCcCCCC---------CCCCc
Q 018478          166 PE----GGLPCAKLKEVVIRWCGRLEALPK-----G---------LHNLKSLQKLTIGKGGLEEDG---------LPTNL  218 (355)
Q Consensus       166 ~~----~~~~~~~L~~L~l~~~~~~~~~p~-----~---------l~~~~~L~~L~l~~~~i~~~~---------~~~~L  218 (355)
                      |+    .+.+-+.|++|.+++| .+..+..     +         ...-|.|++...+.+.+....         .-.+|
T Consensus       109 ~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~l  187 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENL  187 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCc
Confidence            43    3445688999999885 3332211     1         123345666666533333221         11356


Q ss_pred             cEEEecCCcchhh---hhhhhcccCCCCCccceeEecc
Q 018478          219 HSLDIRGNMEIWK---SMIEWGQGFHRFSSLRELRIEG  253 (355)
Q Consensus       219 ~~L~l~~~~~~~~---~~~~~~~~~~~l~~L~~L~l~~  253 (355)
                      +.+.+..|..-..   .....+  +..+.+|+.|++..
T Consensus       188 k~vki~qNgIrpegv~~L~~~g--l~y~~~LevLDlqD  223 (388)
T COG5238         188 KEVKIQQNGIRPEGVTMLAFLG--LFYSHSLEVLDLQD  223 (388)
T ss_pred             eeEEeeecCcCcchhHHHHHHH--HHHhCcceeeeccc
Confidence            6666665542211   011112  44556677777765

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=94.97  E-value=0.15  Score=38.87  Aligned_cols=116  Identities=25%  Similarity=0.348  Sum_probs=48.7

Q ss_pred             cccccccccEEEecCCCccchhccccccchhccccccC--CCCCcccEEEEccCcchhchh-hhccCCCCCcEEEeeccC
Q 018478           60 RRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEVG--NLPPSLKSLRVQGCSKLESIA-ETLDNSTSLETIHIFYCE  136 (355)
Q Consensus        60 ~~~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~  136 (355)
                      +|..+++|+.+.+..  .++.+             ...  ..+++|+.+.+...  +..++ ..+..+++++.+.+.. .
T Consensus         7 ~F~~~~~l~~i~~~~--~~~~I-------------~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~   68 (129)
T PF13306_consen    7 AFYNCSNLESITFPN--TIKKI-------------GENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-N   68 (129)
T ss_dssp             TTTT-TT--EEEETS--T--EE--------------TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-T
T ss_pred             HHhCCCCCCEEEECC--CeeEe-------------Chhhccccccccccccccc--ccccceeeeecccccccccccc-c
Confidence            466677777777763  34444             222  23356777777653  45444 3455666777777754 2


Q ss_pred             CcCccc-ccccCCCCCceEeccccCCCcCCCC-CCCCCCCcceEEEccccCcCccc-ccccCCCCC
Q 018478          137 NMKILP-SGLHNLRQLQEISIEGCGNLESFPE-GGLPCAKLKEVVIRWCGRLEALP-KGLHNLKSL  199 (355)
Q Consensus       137 ~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~p-~~l~~~~~L  199 (355)
                       +..++ ..+..+++|+.+.+..  .+..++. .+..+ +|+.+.+.+  .+..++ ..+.++++|
T Consensus        69 -~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   69 -LKSIGDNAFSNCTNLKNIDIPS--NITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKL  128 (129)
T ss_dssp             -T-EE-TTTTTT-TTECEEEETT--T-BEEHTTTTTT--T--EEE-TT--B-SS----GGG-----
T ss_pred             -ccccccccccccccccccccCc--cccEEchhhhcCC-CceEEEECC--CccEECCccccccccC
Confidence             33333 3445577777777754  2444433 33344 777777654  222333 355555554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=94.88  E-value=0.072  Score=45.81  Aligned_cols=184  Identities=17%  Similarity=0.142  Sum_probs=108.6

Q ss_pred             cccccccEEEecCCCccchhccccccchhccccccCCCCCcccEEEEccCcc----------hhchhhhccCCCCCcEEE
Q 018478           62 YTSYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQGCSK----------LESIAETLDNSTSLETIH  131 (355)
Q Consensus        62 ~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~----------~~~~~~~~~~l~~L~~L~  131 (355)
                      ..+..++++++++...-+..     +.....  . ...-.+|+...+++-.-          +.-+.+.+-+||+|+..+
T Consensus        27 ~~~d~~~evdLSGNtigtEA-----~e~l~~--~-ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~   98 (388)
T COG5238          27 EMMDELVEVDLSGNTIGTEA-----MEELCN--V-IANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVD   98 (388)
T ss_pred             HhhcceeEEeccCCcccHHH-----HHHHHH--H-HhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeee
Confidence            33888999999986544433     111110  0 11125677777765321          111224456799999999


Q ss_pred             eeccCCcCccc----ccccCCCCCceEeccccCCCcCCCC--------------CCCCCCCcceEEEccccCcCcccc--
Q 018478          132 IFYCENMKILP----SGLHNLRQLQEISIEGCGNLESFPE--------------GGLPCAKLKEVVIRWCGRLEALPK--  191 (355)
Q Consensus       132 l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~l~~~~~--------------~~~~~~~L~~L~l~~~~~~~~~p~--  191 (355)
                      +++|..-...|    +.+..-+.|..|.+.+| .+..+.-              ....-|.|+.+....| ++...|.  
T Consensus        99 LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN-Rlengs~~~  176 (388)
T COG5238          99 LSDNAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN-RLENGSKEL  176 (388)
T ss_pred             ccccccCcccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc-hhccCcHHH
Confidence            99988554444    34556788999999887 4433211              1222467888877764 4444332  


Q ss_pred             ---cccCCCCCceEEEeecCcCCC----------CCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCC
Q 018478          192 ---GLHNLKSLQKLTIGKGGLEED----------GLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDD  256 (355)
Q Consensus       192 ---~l~~~~~L~~L~l~~~~i~~~----------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  256 (355)
                         .+..-..|+++.+..+.|...          ..+.+|+.||+.+|.............+...+.|+.|.+.. |-
T Consensus       177 ~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnD-Cl  253 (388)
T COG5238         177 SAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLND-CL  253 (388)
T ss_pred             HHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccc-hh
Confidence               233335889998886555543          24589999999998644322221111144456688888877 53

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=94.32  E-value=0.37  Score=36.64  Aligned_cols=97  Identities=25%  Similarity=0.309  Sum_probs=39.0

Q ss_pred             CCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccccchhccccccC--CCCCcccEE
Q 018478           29 RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEVG--NLPPSLKSL  106 (355)
Q Consensus        29 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~--~~~~~L~~L  106 (355)
                      .+|+.+.+..  .++.++...           |..+++|+.+.+.+  .++.+             ...  ..+++++.+
T Consensus        12 ~~l~~i~~~~--~~~~I~~~~-----------F~~~~~l~~i~~~~--~~~~i-------------~~~~F~~~~~l~~i   63 (129)
T PF13306_consen   12 SNLESITFPN--TIKKIGENA-----------FSNCTSLKSINFPN--NLTSI-------------GDNAFSNCKSLESI   63 (129)
T ss_dssp             TT--EEEETS--T--EE-TTT-----------TTT-TT-SEEEESS--TTSCE--------------TTTTTT-TT-EEE
T ss_pred             CCCCEEEECC--CeeEeChhh-----------cccccccccccccc--ccccc-------------ceeeeecccccccc
Confidence            3566666553  345555443           45566666666654  23443             221  222356666


Q ss_pred             EEccCcchhchh-hhccCCCCCcEEEeeccCCcCccc-ccccCCCCCceEeccc
Q 018478          107 RVQGCSKLESIA-ETLDNSTSLETIHIFYCENMKILP-SGLHNLRQLQEISIEG  158 (355)
Q Consensus       107 ~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~  158 (355)
                      .+.+  .+..++ ..+..+++|+.+.+..+  +..++ ..+.++ +|+.+.+..
T Consensus        64 ~~~~--~~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   64 TFPN--NLKSIGDNAFSNCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             EETS--TT-EE-TTTTTT-TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred             cccc--cccccccccccccccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence            6654  233333 23444667777766542  33333 234444 666666653

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.26  E-value=0.027  Score=28.47  Aligned_cols=20  Identities=30%  Similarity=0.504  Sum_probs=11.7

Q ss_pred             cccEEEEccCcchhchhhhcc
Q 018478          102 SLKSLRVQGCSKLESIAETLD  122 (355)
Q Consensus       102 ~L~~L~l~~~~~~~~~~~~~~  122 (355)
                      +|++|++++|. ++.+|+.++
T Consensus         1 ~L~~Ldls~n~-l~~ip~~~~   20 (22)
T PF00560_consen    1 NLEYLDLSGNN-LTSIPSSFS   20 (22)
T ss_dssp             TESEEEETSSE-ESEEGTTTT
T ss_pred             CccEEECCCCc-CEeCChhhc
Confidence            35666666664 556665443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=93.79  E-value=0.037  Score=47.14  Aligned_cols=60  Identities=18%  Similarity=0.289  Sum_probs=30.8

Q ss_pred             CCCcccEEEEccC--cchhchhhhccCCCCCcEEEeeccCCcCcc--cccccCCCCCceEecccc
Q 018478           99 LPPSLKSLRVQGC--SKLESIAETLDNSTSLETIHIFYCENMKIL--PSGLHNLRQLQEISIEGC  159 (355)
Q Consensus        99 ~~~~L~~L~l~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~  159 (355)
                      .+++|++|.+++|  .-...++.-...+|+|++|+++.|. +..+  ...+..+.+|..|++.+|
T Consensus        63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~pl~~l~nL~~Ldl~n~  126 (260)
T KOG2739|consen   63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRPLKELENLKSLDLFNC  126 (260)
T ss_pred             CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccchhhhhcchhhhhcccC
Confidence            3456777777766  3222333333445777777777665 2211  012334455555555555

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.49  E-value=0.058  Score=25.32  Aligned_cols=15  Identities=33%  Similarity=0.419  Sum_probs=6.6

Q ss_pred             CccEEeeCCCCCCccc
Q 018478          301 NLTSLYLVGCPKLKYF  316 (355)
Q Consensus       301 ~L~~L~l~~~~~l~~~  316 (355)
                      +|+.|++++| +++++
T Consensus         2 ~L~~L~l~~n-~L~~l   16 (17)
T PF13504_consen    2 NLRTLDLSNN-RLTSL   16 (17)
T ss_dssp             T-SEEEETSS---SSE
T ss_pred             ccCEEECCCC-CCCCC
Confidence            4555556555 35544

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.15  E-value=0.013  Score=47.92  Aligned_cols=65  Identities=18%  Similarity=0.206  Sum_probs=36.5

Q ss_pred             CCCCccEEeecccccCccccc---CccCCCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccc
Q 018478            4 TNSSLEILEIWSCRSLTYLAA---VQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLT   79 (355)
Q Consensus         4 ~~~~L~~L~l~~~~~l~~l~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~   79 (355)
                      .++.++.|.+.+|..+.++.-   .+..++|+.|+|++|+.|++-....           +..+++|+.|.+...+.+.
T Consensus       123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~-----------L~~lknLr~L~l~~l~~v~  190 (221)
T KOG3864|consen  123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLAC-----------LLKLKNLRRLHLYDLPYVA  190 (221)
T ss_pred             ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHH-----------HHHhhhhHHHHhcCchhhh
Confidence            345666677777765554432   1133777777777777666543322           2336666666666544433

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.10  E-value=0.026  Score=46.22  Aligned_cols=41  Identities=17%  Similarity=0.100  Sum_probs=18.0

Q ss_pred             CccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccc
Q 018478          217 NLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVS  260 (355)
Q Consensus       217 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  260 (355)
                      .++.|.+.+|..+.+...+..  -+..++|+.|++++ |.++++
T Consensus       126 ~i~~l~l~~ck~~dD~~L~~l--~~~~~~L~~L~lsg-C~rIT~  166 (221)
T KOG3864|consen  126 SIKSLSLANCKYFDDWCLERL--GGLAPSLQDLDLSG-CPRITD  166 (221)
T ss_pred             hhhhheeccccchhhHHHHHh--cccccchheeeccC-CCeech
Confidence            334444455554444443332  22334455555554 444443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=91.45  E-value=0.14  Score=43.62  Aligned_cols=105  Identities=19%  Similarity=0.161  Sum_probs=60.6

Q ss_pred             CCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcc-cccCccccccCCCCCCCCccceEEeccCCCcccccc
Q 018478          216 TNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDM-VSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSS  294 (355)
Q Consensus       216 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~  294 (355)
                      ..|+.+++.++...+ ...     +-.+++|+.|.++.+...+ ..+..-       ....++|+++.+++ +.++.+..
T Consensus        43 ~~le~ls~~n~gltt-~~~-----~P~Lp~LkkL~lsdn~~~~~~~l~vl-------~e~~P~l~~l~ls~-Nki~~lst  108 (260)
T KOG2739|consen   43 VELELLSVINVGLTT-LTN-----FPKLPKLKKLELSDNYRRVSGGLEVL-------AEKAPNLKVLNLSG-NKIKDLST  108 (260)
T ss_pred             cchhhhhhhccceee-ccc-----CCCcchhhhhcccCCcccccccceeh-------hhhCCceeEEeecC-Cccccccc
Confidence            355556665554332 111     5567888999998721122 111111       13347899999988 56664321


Q ss_pred             --cCCCCCCccEEeeCCCCCCcccCCC-----CCCCCccEEEecCCch
Q 018478          295 --SIVDLQNLTSLYLVGCPKLKYFPEK-----GLPSSLLELWIGGCPL  335 (355)
Q Consensus       295 --~~~~~~~L~~L~l~~~~~l~~~~~~-----~~~~~L~~L~l~~c~~  335 (355)
                        ....+.+|..|++.+|+ .+.+..-     .+.++|++|+-.++..
T Consensus       109 l~pl~~l~nL~~Ldl~n~~-~~~l~dyre~vf~ll~~L~~LD~~dv~~  155 (260)
T KOG2739|consen  109 LRPLKELENLKSLDLFNCS-VTNLDDYREKVFLLLPSLKYLDGCDVDG  155 (260)
T ss_pred             cchhhhhcchhhhhcccCC-ccccccHHHHHHHHhhhhccccccccCC
Confidence              13567788888888884 4443221     1368888888766654

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=86.28  E-value=0.42  Score=25.10  Aligned_cols=18  Identities=33%  Similarity=0.530  Sum_probs=12.1

Q ss_pred             CCCccEEEecCCchhhHh
Q 018478          322 PSSLLELWIGGCPLIEEK  339 (355)
Q Consensus       322 ~~~L~~L~l~~c~~l~~~  339 (355)
                      +++|++|++++|+.+++.
T Consensus         1 c~~L~~L~l~~C~~itD~   18 (26)
T smart00367        1 CPNLRELDLSGCTNITDE   18 (26)
T ss_pred             CCCCCEeCCCCCCCcCHH
Confidence            356777777777766654

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=85.12  E-value=0.62  Score=24.32  Aligned_cols=19  Identities=32%  Similarity=0.389  Sum_probs=12.0

Q ss_pred             CCccEEeeCCCCCCcccCCC
Q 018478          300 QNLTSLYLVGCPKLKYFPEK  319 (355)
Q Consensus       300 ~~L~~L~l~~~~~l~~~~~~  319 (355)
                      ++|++|++++| +|+.+|..
T Consensus         2 ~~L~~L~L~~N-~l~~lp~~   20 (26)
T smart00369        2 PNLRELDLSNN-QLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCC-cCCcCCHH
Confidence            45666777666 66666653

>smart00370 LRR Leucine-rich repeats, outliers

Probab=85.12  E-value=0.62  Score=24.32  Aligned_cols=19  Identities=32%  Similarity=0.389  Sum_probs=12.0

Q ss_pred             CCccEEeeCCCCCCcccCCC
Q 018478          300 QNLTSLYLVGCPKLKYFPEK  319 (355)
Q Consensus       300 ~~L~~L~l~~~~~l~~~~~~  319 (355)
                      ++|++|++++| +|+.+|..
T Consensus         2 ~~L~~L~L~~N-~l~~lp~~   20 (26)
T smart00370        2 PNLRELDLSNN-QLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCC-cCCcCCHH
Confidence            45666777666 66666653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	355
4fcg_A	328	Structure Of The Leucine-Rich Repeat Domain Of The		3e-06

>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 76/140 (54%), Gaps = 9/140 (6%)
Query: 67  LEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTS 126
           L EL I +C  LT +     L++T  S E   L  +L+SLR++  + + S+  ++ N  +
Sbjct: 152 LRELSIRACPELTEL--PEPLASTDASGEHQGLV-NLQSLRLE-WTGIRSLPASIANLQN 207
Query: 127 LETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPE--GGLPCAKLKEVVIRWCG 184
           L+++ I     +  L   +H+L +L+E+ + GC  L ++P   GG   A LK ++++ C 
Sbjct: 208 LKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR--APLKRLILKDCS 264
Query: 185 RLEALPKGLHNLKSLQKLTI 204
            L  LP  +H L  L+KL +
Sbjct: 265 NLLTLPLDIHRLTQLEKLDL 284

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	355
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-11
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-10
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	6e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	8e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	8e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 87.3 bits (217), Expect = 1e-19
 Identities = 64/305 (20%), Positives = 102/305 (33%), Gaps = 36/305 (11%)

Query: 29  RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELS 88
              + L  Q  + +R     + +       +     +       +S        +   L 
Sbjct: 12  SGRENLYFQGSTALRPY--HDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALK 69

Query: 89  ATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNL 148
           AT + LE    P    +L ++    L    +     + L+ + I     +  LP  +   
Sbjct: 70  ATADLLEDATQP-GRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAA-GLMELPDTMQQF 126

Query: 149 RQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEALPKGL---------HNLKSL 199
             L+ +++     L + P       +L+E+ IR C  L  LP+ L           L +L
Sbjct: 127 AGLETLTLARN-PLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNL 185

Query: 200 QKLTIGKGGLEEDGLP------TNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEG 253
           Q L +   G+    LP       NL SL IR +      +   G   H    L EL + G
Sbjct: 186 QSLRLEWTGIRS--LPASIANLQNLKSLKIRNS-----PLSALGPAIHHLPKLEELDLRG 238

Query: 254 CDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKL 313
           C   + ++PP              L  L +    NL  L   I  L  L  L L GC  L
Sbjct: 239 CTA-LRNYPPIFGGR-------APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290

Query: 314 KYFPE 318
              P 
Sbjct: 291 SRLPS 295

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 69.6 bits (171), Expect = 1e-13
 Identities = 45/261 (17%), Positives = 72/261 (27%), Gaps = 53/261 (20%)

Query: 114 LESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPE------ 167
           + S      +S+  E ++      ++     L   ++          +            
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQI 60

Query: 168 ---------------GGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEED 212
                                    + +R    L   P     L  LQ +TI   GL E 
Sbjct: 61  ETRTGRALKATADLLEDATQPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAGLME- 118

Query: 213 GLP------TNLHSLDIRGNM------EIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVS 260
            LP        L +L +  N        I              + LREL I  C  ++  
Sbjct: 119 -LPDTMQQFAGLETLTLARNPLRALPASIAS-----------LNRLRELSIRAC-PELTE 165

Query: 261 FPPEDIRMGTTLPLPTSLTSLAIF--SFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPE 318
            P   +           L +L      +  +  L +SI +LQNL SL +     L     
Sbjct: 166 LPEP-LASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNS-PLSALGP 223

Query: 319 K-GLPSSLLELWIGGCPLIEE 338
                  L EL + GC  +  
Sbjct: 224 AIHHLPKLEELDLRGCTALRN 244

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 62.3 bits (152), Expect = 4e-11
 Identities = 39/189 (20%), Positives = 70/189 (37%), Gaps = 32/189 (16%)

Query: 5   NSSLEIL--EIWSCRSLTYLAA-----VQLP------RSLKRLDIQCCSNIRTLTMEEGI 51
            + L  L   +     L  L         LP        L+ L I+ C  +  L      
Sbjct: 113 AAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLA- 171

Query: 52  QSSSSSSSRRYTSYLLEELCISSCR---------SLTS----IFSKNELSATLESLEVGN 98
            + +S   +   +  L+ L +             +L +        + LSA   ++   +
Sbjct: 172 STDASGEHQGLVN--LQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAI--HH 227

Query: 99  LPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEG 158
           LP  L+ L ++GC+ L +          L+ + +  C N+  LP  +H L QL+++ + G
Sbjct: 228 LP-KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRG 286

Query: 159 CGNLESFPE 167
           C NL   P 
Sbjct: 287 CVNLSRLPS 295

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.9 bits (152), Expect = 6e-11
 Identities = 48/271 (17%), Positives = 100/271 (36%), Gaps = 65/271 (23%)

Query: 16  CRSLTYLAAVQLPRSLKRLDIQCCSNIRTL--TMEEGIQSSSSSSSRRYTSYLLEELCIS 73
              L  L  VQ  ++    ++ C    + L  T  + +    S+++  + S  L+     
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSC----KILLTTRFKQVTDFLSAATTTHIS--LDHH--- 294

Query: 74  SCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDN--STSLETIH 131
              +LT    K+ L   L+     +LP  + +   +  S    IAE++ +  +T     H
Sbjct: 295 -SMTLTPDEVKSLLLKYLD-CRPQDLPREVLTTNPRRLS---IIAESIRDGLATWDNWKH 349

Query: 132 IFYCENMKILPSGLHNL-----RQL-QEISIEGCGNLESFPEGGLPCAKLKEVV--IRWC 183
           +   +   I+ S L+ L     R++   +S+        FP      A +  ++  + W 
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDRLSV--------FPPS----AHIPTILLSLIWF 397

Query: 184 GRLEALP----KGLHNLKSLQKLTIGKGGLEEDGLPT--NLHSL--DIRGNMEIWKSMIE 235
             +++        LH   SL         +E+    +  ++ S+  +++  +E   ++  
Sbjct: 398 DVIKSDVMVVVNKLHK-YSL---------VEKQPKESTISIPSIYLELKVKLENEYAL-- 445

Query: 236 WGQGFHRFSSLRELRIEGC-DDDMVSFPPED 265
                HR S +    I    D D +  P  D
Sbjct: 446 -----HR-SIVDHYNIPKTFDSDDLIPPYLD 470

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.9 bits (152), Expect = 7e-11
 Identities = 60/437 (13%), Positives = 112/437 (25%), Gaps = 142/437 (32%)

Query: 25  VQLPRSLKRLDIQCCSNI-----RTLTMEE--GIQSSSSSSSRRYTSYLLEELCISSCRS 77
           V     +   D   C ++       L+ EE   I  S  + S      L   L  S    
Sbjct: 24  VFEDAFVDNFD---CKDVQDMPKSILSKEEIDHIIMSKDAVSGTL--RLFWTLL-SKQEE 77

Query: 78  LTSIFSKNELSAT----LESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLET-IHI 132
           +   F +  L       +  ++     PS+ +             + L N   +    ++
Sbjct: 78  MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT------RMYIEQRDRLYNDNQVFAKYNV 131

Query: 133 FYCENMKILPSGLHNLRQLQEISIE---GCG------------NLESFPEGGLPCAKLKE 177
              +    L   L  LR  + + I+   G G             ++   +          
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK-------- 183

Query: 178 VVIRW-----CGRLEALPKGLHNLKSLQKLTIGKGGLEEDGLPTNLHSL----------- 221
             I W     C   E + + L  L                 +   +HS+           
Sbjct: 184 --IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241

Query: 222 ----------DIRGNMEIWK-----------------------------SMIEWGQGFHR 242
                     +++ N + W                              S+         
Sbjct: 242 PYENCLLVLLNVQ-NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300

Query: 243 FSSLREL-RIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFP---------NLERL 292
                 L +   C       P E   + TT P   S+ + +I             N ++L
Sbjct: 301 DEVKSLLLKYLDCRPQ--DLPRE---VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355

Query: 293 SSSI-VDLQNLTS-----LYLVGCPKLKYFPEK-GLPSSLLE-LWIGG----CPLIEEKC 340
           ++ I   L  L       ++     +L  FP    +P+ LL  +W         ++  K 
Sbjct: 356 TTIIESSLNVLEPAEYRKMFD----RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL 411

Query: 341 R------KDGGQYFYSL 351
                  K   +   S+
Sbjct: 412 HKYSLVEKQPKESTISI 428

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 60.7 bits (147), Expect = 3e-10
 Identities = 53/352 (15%), Positives = 104/352 (29%), Gaps = 47/352 (13%)

Query: 11  LEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEEL 70
           + I +C +++    ++    ++ ++++   +           +        Y    +E +
Sbjct: 48  VFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADF-------NLVPDGWGGYVYPWIEAM 100

Query: 71  CISSCRSLTSI-FSKNELS-ATLESLEVGNLPPSLKSLRVQGCSKL--ESIAETLDNSTS 126
             SS   L  I   +  ++   LE +       + K L +  C     + +A       +
Sbjct: 101 S-SSYTWLEEIRLKRMVVTDDCLELIAKSF--KNFKVLVLSSCEGFSTDGLAAIAATCRN 157

Query: 127 LETIHIFYCENMKILPSGL----HNLRQLQEISIEGCGN------LESFPEGGLPCAKLK 176
           L+ + +   +   +    L         L  ++I    +      LE        C  LK
Sbjct: 158 LKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTR---CPNLK 214

Query: 177 EVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEEDGLPTNLHSLDIRGNMEIWKSMIEW 236
            + +     LE L   L     L++L  G    E      +  S+ + G  E+      W
Sbjct: 215 SLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFW 274

Query: 237 GQG-------FHRFSSLRELRIEGC---DDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSF 286
                     +   S L  L +        D+V            L     L  L +  +
Sbjct: 275 DAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKL----------LCQCPKLQRLWVLDY 324

Query: 287 PNLERLSSSIVDLQNLTSLYLVGCPKLKYFPEKGLPSSLLELWIGGCPLIEE 338
                L       ++L  L +         P   L    L     GCP +E 
Sbjct: 325 IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLES 376

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 53.0 bits (127), Expect = 6e-08
 Identities = 50/338 (14%), Positives = 105/338 (31%), Gaps = 57/338 (16%)

Query: 1   MCDTNSSLEILEIWSCR----SLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSS 56
           M  + + LE + +         L  +A  +  ++ K L +  C    T    +G+ + ++
Sbjct: 100 MSSSYTWLEEIRLKRMVVTDDCLELIA--KSFKNFKVLVLSSCEGFST----DGLAAIAA 153

Query: 57  SSSRRYTSYLLEELCISSCRSLTSIFSKNELSATLESL-EVGNLPPSLKSLRVQGCSKL- 114
           +         L+EL +            +    +   L    +   SL SL +   +   
Sbjct: 154 TCRN------LKELDLRES---------DVDDVSGHWLSHFPDTYTSLVSLNISCLASEV 198

Query: 115 --ESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGN------LESFP 166
              ++   +    +L+++ +     ++ L + L    QL+E+   G              
Sbjct: 199 SFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLS 258

Query: 167 EGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEEDGLP------TNLHS 220
                C +L+ +   W      LP        L  L +    ++   L         L  
Sbjct: 259 VALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQR 318

Query: 221 LDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTS 280
           L +   +E    +            LRELR+   +  ++                  L S
Sbjct: 319 LWVLDYIED-AGLEVLASTCK---DLRELRVFPSEPFVME--------PNVALTEQGLVS 366

Query: 281 LAIFSFPNLERLSSSIVDLQNLTSLYLVG--CPKLKYF 316
           ++    P LE +      + N  +L  +    P +  F
Sbjct: 367 VS-MGCPKLESVLYFCRQMTN-AALITIARNRPNMTRF 402

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 43.3 bits (102), Expect = 8e-05
 Identities = 49/331 (14%), Positives = 92/331 (27%), Gaps = 53/331 (16%)

Query: 7   SLEILEIWSCRSLTYLAAV-QLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSY 65
           +L+ L++     L  LA + Q    L+ L     +      +  G+  + S         
Sbjct: 212 NLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSG-------- 263

Query: 66  LLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQGCSKL-ESIAETLDNS 124
             E  C+S             L A             L +L +   +     + + L   
Sbjct: 264 CKELRCLSGFWDAVP----AYLPAVYSVC------SRLTTLNLSYATVQSYDLVKLLCQC 313

Query: 125 TSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCG 184
             L+ + +        L       + L+E+ +         P   L    L  V +  C 
Sbjct: 314 PKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMG-CP 372

Query: 185 RLEALPKGLHNL--KSLQKLTIGKGGLEEDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHR 242
           +LE++      +   +L  +   +  +    L            +E        G     
Sbjct: 373 KLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGF--GAIVEH 430

Query: 243 FSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSL-------TSLAIFSF----PNLER 291
              LR L + G   D          +GT       L       + L +        +L +
Sbjct: 431 CKDLRRLSLSGLLTD-----KVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRK 485

Query: 292 LS---SSIVD---------LQNLTSLYLVGC 310
           L        D         L+ + SL++  C
Sbjct: 486 LEIRDCPFGDKALLANASKLETMRSLWMSSC 516

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 43.0 bits (101), Expect = 1e-04
 Identities = 37/232 (15%), Positives = 77/232 (33%), Gaps = 31/232 (13%)

Query: 6   SSLEILEIWSCRSLTY--LAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYT 63
           S L  L +      +Y  +  +     L+RL +     I     + G++  +S+      
Sbjct: 289 SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWV--LDYIE----DAGLEVLASTCKD--- 339

Query: 64  SYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQGCSKL--ESIAETL 121
              L EL +          +       L S+      P L+S+ +  C ++   ++    
Sbjct: 340 ---LRELRVFPSEPFVMEPNVALTEQGLVSV--SMGCPKLESV-LYFCRQMTNAALITIA 393

Query: 122 DNSTSLETIHIFYCENMKI-----------LPSGLHNLRQLQEISIEGCGNLESFPEGGL 170
            N  ++    +   E                 + + + + L+ +S+ G    + F   G 
Sbjct: 394 RNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGT 453

Query: 171 PCAKLKEVVIRWCG-RLEALPKGLHNLKSLQKLTIGKGGLEEDGLPTNLHSL 221
              K++ + + + G     +   L    SL+KL I      +  L  N   L
Sbjct: 454 YAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKL 505

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 59.0 bits (143), Expect = 7e-10
 Identities = 32/207 (15%), Positives = 73/207 (35%), Gaps = 25/207 (12%)

Query: 67  LEELCISSCRSLTSI-FSKNELSA-TLESLEVGNLPPSLKSLRVQGC--SKLESIAETLD 122
           +        +SL  +  S+N +    L++       PSL++L +       ++   E L 
Sbjct: 325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL 384

Query: 123 NSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRW 182
              +L ++ I        +P       +++ +++     +            L+ + +  
Sbjct: 385 TLKNLTSLDISRN-TFHPMPDSCQWPEKMRFLNLSST-GIRVVKTCIPQ--TLEVLDVSN 440

Query: 183 CGRLEALPKGLHNLKSLQ----KLTIGKGGLEEDGLPTNLHSLDIRGNMEIWKSMIEWGQ 238
              L++    L  L+ L     KL      L +  L   L  + I  N ++    +  G 
Sbjct: 441 N-NLDSFSLFLPRLQELYISRNKLKT----LPDASLFPVLLVMKISRN-QL--KSVPDGI 492

Query: 239 GFHRFSSLRELRIEG----CDDDMVSF 261
            F R +SL+++ +      C    + +
Sbjct: 493 -FDRLTSLQKIWLHTNPWDCSCPRIDY 518

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.9 bits (104), Expect = 6e-05
 Identities = 44/258 (17%), Positives = 90/258 (34%), Gaps = 33/258 (12%)

Query: 74  SCRSLTSIFSKNELSATLESLEVGN-----LPPS-------LKSLRVQGCSKLESI-AET 120
             RS TSI S   L+A ++SL++       +          L+ L ++   ++ +I  + 
Sbjct: 13  RSRSFTSIPS--GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDA 69

Query: 121 LDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGL--PCAKLKEV 178
             +  SLE + +       +  S    L  L+ +++ G    ++     L      L+ +
Sbjct: 70  FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN-PYQTLGVTSLFPNLTNLQTL 128

Query: 179 VIRWCGRLEALPKG-LHNLKSLQKLTIGKGGLEE------DGLPTNLHSLDIRGNMEIWK 231
            I        + +     L SL +L I    L          +  ++H L +  +   + 
Sbjct: 129 RIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIR-DIHHLTLHLSESAFL 187

Query: 232 SMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAI--FSFPNL 289
             I         SS+R L +   +     F P  +   ++     +     +   SF  L
Sbjct: 188 LEIF----ADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL 243

Query: 290 ERLSSSIVDLQNLTSLYL 307
            +L   I++L  +     
Sbjct: 244 LKLLRYILELSEVEFDDC 261

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.2 bits (102), Expect = 9e-05
 Identities = 58/339 (17%), Positives = 100/339 (29%), Gaps = 58/339 (17%)

Query: 1   MCDTNSSLEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSR 60
             D  SS+  LE+    +L       LP       ++  +  R   + +   +      R
Sbjct: 191 FADILSSVRYLEL-RDTNLARFQFSPLPVDEVSSPMKKLAF-RGSVLTDESFNELLKLLR 248

Query: 61  RYTSYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAET 120
                 L E+    C            S  +  L       +++ L +        ++  
Sbjct: 249 YILE--LSEVEFDDCTLNGLGDFNPSESDVVSELGKVETV-TIRRLHIPQFYLFYDLSTV 305

Query: 121 LDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVI 180
                 ++ I +   +   +  S   +L+ L+ + +                  + E  +
Sbjct: 306 YSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN--------------LMVEEYL 351

Query: 181 RWCGRLEALPKGLHNLKSLQKL--------TIGKGGLEEDGLPTNLHSLDIRGNMEIWKS 232
           +      A P       SLQ L        ++ K G     L  NL SLDI  N      
Sbjct: 352 KNSACKGAWP-------SLQTLVLSQNHLRSMQKTGEILLTL-KNLTSLDISRN------ 397

Query: 233 MIEWGQ-GFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLER 291
                         +R L +      +               +P +L  L + S  NL+ 
Sbjct: 398 TFHPMPDSCQWPEKMRFLNLSST--GIRVVKTC---------IPQTLEVLDV-SNNNLDS 445

Query: 292 LSSSIVDLQNLTSLYLVGCPKLKYFPEKGLPSSLLELWI 330
            S     L  L  LY+    KLK  P+  L   LL + I
Sbjct: 446 FSL---FLPRLQELYISRN-KLKTLPDASLFPVLLVMKI 480

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 53/237 (22%), Positives = 80/237 (33%), Gaps = 41/237 (17%)

Query: 111 CSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCG---------- 160
            S L  +    +N  S    +  + E  +  P G    R++    +  C           
Sbjct: 20  SSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELN 79

Query: 161 --NLESFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEEDGLPTNL 218
              L S PE       L+ +V   C  L  LP+   +LKSL         L +  LP  L
Sbjct: 80  NLGLSSLPEL---PPHLESLVA-SCNSLTELPELPQSLKSLLVDNNNLKALSD--LPPLL 133

Query: 219 HSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSL 278
             L +  N       +E        S L+ + ++     +   P            P SL
Sbjct: 134 EYLGVSNN------QLEKLPELQNSSFLKIIDVDNN--SLKKLPDL----------PPSL 175

Query: 279 TSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPEKGLPSSLLELWIGGCPL 335
             +A      LE L   + +L  LT++Y      LK  P+  LP SL  +  G   L
Sbjct: 176 EFIAA-GNNQLEEL-PELQNLPFLTAIYADNN-SLKKLPD--LPLSLESIVAGNNIL 227

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 49.6 bits (119), Expect = 8e-07
 Identities = 72/303 (23%), Positives = 108/303 (35%), Gaps = 56/303 (18%)

Query: 67  LEELCISSCRSLTSIFSKNELSATLESLEVGN--------LPPSLKSLRVQGCSKLESIA 118
           LE L  S    LT +    EL  +L+SL V N        LPP L+ L V    +LE + 
Sbjct: 93  LESLVASCNS-LTEL---PELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNN-QLEKLP 147

Query: 119 ETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEV 178
           E L NS+ L+ I +    ++K LP    +L  +   +      LE  PE       L  +
Sbjct: 148 E-LQNSSFLKIIDVDNN-SLKKLPDLPPSLEFI---AAGNN-QLEELPELQ-NLPFLTAI 200

Query: 179 VIRWCGRLEALPKGLHNLKSLQ----KLTIGKGGLEEDGLPTNLHSLDIRGN-MEIWKSM 233
                  L+ LP    +L+S+      L      L E      L ++    N ++    +
Sbjct: 201 YADNN-SLKKLPDLPLSLESIVAGNNILEE----LPELQNLPFLTTIYADNNLLKTLPDL 255

Query: 234 IEWGQGFH-----------RFSSLRELRIEGCDDDMVSFPPEDIR-------MGTTLP-L 274
               +  +              SL  L +       +S  P ++           +L  L
Sbjct: 256 PPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDL 315

Query: 275 PTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPEKGLPSSLLELWIGGCP 334
           P SL  L + S   L  L +       L  L       L   PE  LP +L +L +   P
Sbjct: 316 PPSLEELNV-SNNKLIELPALP---PRLERLIASFN-HLAEVPE--LPQNLKQLHVEYNP 368

Query: 335 LIE 337
           L E
Sbjct: 369 LRE 371

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.1 bits (130), Expect = 3e-08
 Identities = 37/304 (12%), Positives = 86/304 (28%), Gaps = 52/304 (17%)

Query: 72  ISSCRSLTSIF-SKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETI 130
           I     L  I+ + +  +    ++         +        + E+   +  N   L  +
Sbjct: 444 IQRLTKLQIIYFANSPFTYDNIAV-------DWEDANSDYAKQYENEELSWSNLKDLTDV 496

Query: 131 HIFYCENMKILPSGLHNLRQLQEISI---------EGCGNLESFPEGGLPCAKLKEVVIR 181
            ++ C NM  LP  L++L +LQ ++I         +   +     +      K++   + 
Sbjct: 497 ELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG 556

Query: 182 WCGRLEALPK--GLHNLKSLQKLTIGK---GGLEEDGLPTNLHSLDIRGN------MEIW 230
           +   LE  P    L  +  L  L         LE  G    L  L +  N       +  
Sbjct: 557 YN-NLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFC 615

Query: 231 KSM---------------IEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLP 275
                             I           +  +         +     +I         
Sbjct: 616 AFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYN---KIGSEGRNISCSMDDYKG 672

Query: 276 TSLTSLAIFSFPNLERL-SSSIVDLQNLTSLYLVGCPKLKYFPEKGLPSSLLELWIGGCP 334
            + +++ + S+  +++  +        ++++ L     +   PE  L     +       
Sbjct: 673 INASTVTL-SYNEIQKFPTELFATGSPISTIILSNN-LMTSIPENSL--KPKDGNYKNTY 728

Query: 335 LIEE 338
           L+  
Sbjct: 729 LLTT 732

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 44.9 bits (106), Expect = 3e-05
 Identities = 25/205 (12%), Positives = 54/205 (26%), Gaps = 19/205 (9%)

Query: 120 TLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVV 179
            LDN+  +  + +        +P  +  L +L+ +S        S    G          
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSE 377

Query: 180 IRW-CGRLEALPKGLHNLKSLQKLTIGKGGLEEDGLPTNLHSLDIRGNMEIWKSMIEWG- 237
            R    R+      L   + L    + +  +  +     +         +     +    
Sbjct: 378 ERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRI 437

Query: 238 ----QGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLS 293
               +   R + L+ +                    T   +               E   
Sbjct: 438 TFISKAIQRLTKLQIIYFANSPF-------------TYDNIAVDWEDANSDYAKQYENEE 484

Query: 294 SSIVDLQNLTSLYLVGCPKLKYFPE 318
            S  +L++LT + L  CP +   P+
Sbjct: 485 LSWSNLKDLTDVELYNCPNMTQLPD 509

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 41.8 bits (98), Expect = 3e-04
 Identities = 26/187 (13%), Positives = 52/187 (27%), Gaps = 26/187 (13%)

Query: 64  SYLLEELCISSCRSLTSI-FSKNELSATLESLEVGNLP---PSLKSLRVQGCSKLESIAE 119
            Y+       S   + S+ FS N++ +   ++          +  ++ +      +   E
Sbjct: 632 KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTE 691

Query: 120 TLDNSTSLETIHIFYC-------ENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPC 172
                + + TI +           ++K       N   L  I +     L S  +     
Sbjct: 692 LFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRAT 750

Query: 173 A--KLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGK-----GGLEEDGLP------TNLH 219
               L  + + +     + P    N   L+   I       G       P       +L 
Sbjct: 751 TLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLI 809

Query: 220 SLDIRGN 226
            L I  N
Sbjct: 810 QLQIGSN 816

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.9 bits (130), Expect = 4e-08
 Identities = 57/340 (16%), Positives = 105/340 (30%), Gaps = 62/340 (18%)

Query: 27  LPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNE 86
           LP S + L+               + +  +++  R  +  L  L ++ C+ +  I     
Sbjct: 31  LPNSTECLEFSFNV----------LPTIQNTTFSRLIN--LTFLDLTRCQ-IYWIHED-- 75

Query: 87  LSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLH 146
              T +S         L +L +     +      L    +L+ +         I    LH
Sbjct: 76  ---TFQSQ------HRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLH 126

Query: 147 NLRQLQEISIEGCGNLESFPEGGL-PCAKLKEVVIRWCGRLEALPKG-LHNLKSLQKLTI 204
           N + L+ + +    ++ S       P  KLK +  +    +  L K  + +L+    L++
Sbjct: 127 NQKTLESLYLGSN-HISSIKLPKGFPTEKLKVLDFQNN-AIHYLSKEDMSSLQQATNLSL 184

Query: 205 GKGGLEEDGLP------TNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDM 258
              G +  G+           SL+  G       +I  G       SL     E  DD+ 
Sbjct: 185 NLNGNDIAGIEPGAFDSAVFQSLNFGGTQ--NLLVIFKGLKNSTIQSLWLGTFEDMDDE- 241

Query: 259 VSFPPEDIRMGTTLPLPT------SLTSLAIFSFPNLERL-------------SSSIVDL 299
               P        + + +         +++  +F     L              S +V L
Sbjct: 242 -DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGL 300

Query: 300 QNLTSLYLVGCPKLKYFPE---KGLPSSLLELWIGGCPLI 336
             L  L L    K +   +      P SL  L I G    
Sbjct: 301 STLKKLVLSAN-KFENLCQISASNFP-SLTHLSIKGNTKR 338

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 49/281 (17%), Positives = 90/281 (32%), Gaps = 49/281 (17%)

Query: 67  LEELCISSCRSLTSI-FSKNELSATLESLEVGNLPPSLKSLRVQGC--SKLESIAETLDN 123
           L ++  S+  SLT +    N     L +  + NL  +L+ L +        +     L N
Sbjct: 316 LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE-NLRELDLSHDDIETSDCCNLQLRN 374

Query: 124 STSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWC 183
            + L+++++ Y E + +         QL+ + +     L+                    
Sbjct: 375 LSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT-RLKVKDAQSP------------- 420

Query: 184 GRLEALPKGLHNLKSLQKLTIGKGGLEE------DGLPTNLHSLDIRGNMEIWKSMIEWG 237
                      NL  L+ L +    L+       DGLP  L  L+++GN     ++ +  
Sbjct: 421 ---------FQNLHLLKVLNLSHSLLDISSEQLFDGLP-ALQHLNLQGNHFPKGNIQKTN 470

Query: 238 QGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIV 297
                   L  L +  C  D+ S                 +  +   S   L   S    
Sbjct: 471 -SLQTLGRLEILVLSFC--DLSSIDQH------AFTSLKMMNHV-DLSHNRLTSSSIEA- 519

Query: 298 DLQNLTSLYL-VGCPKLKYFPEKGLP--SSLLELWIGGCPL 335
            L +L  +YL +    +       LP  S    + +   PL
Sbjct: 520 -LSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 41/272 (15%), Positives = 76/272 (27%), Gaps = 41/272 (15%)

Query: 66  LLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNST 125
           + E LC  S  S+     K+     + S         L+ L +     L  +   L   +
Sbjct: 247 VFEGLCEMSVESI--NLQKHYFF-NISSNTFHCFS-GLQELDLTAT-HLSELPSGLVGLS 301

Query: 126 SLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGL-PCAKLKEVVIRWC- 183
           +L+ + +   +   +      N   L  +SI+G         G L     L+E+ +    
Sbjct: 302 TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD 361

Query: 184 -GRLEALPKGLHNLKSLQKLTIGK---GGLEEDGLP--TNLHSLDIRGNMEIWKSMIEWG 237
               +     L NL  LQ L +       L+ +       L  LD+     +   + +  
Sbjct: 362 IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT-RL--KVKDAQ 418

Query: 238 QGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTL--------PLPTSLTSLAIFSFPNL 289
             F     L+ L +      +     +       L                    S   L
Sbjct: 419 SPFQNLHLLKVLNLSHS--LLDISSEQLFDGLPALQHLNLQGNHF-PKGNIQKTNSLQTL 475

Query: 290 ERL--------------SSSIVDLQNLTSLYL 307
            RL                +   L+ +  + L
Sbjct: 476 GRLEILVLSFCDLSSIDQHAFTSLKMMNHVDL 507

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 52.8 bits (127), Expect = 7e-08
 Identities = 49/252 (19%), Positives = 92/252 (36%), Gaps = 34/252 (13%)

Query: 98  NLPPSLKSLRVQGCSKLESI-AETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISI 156
            +P   + L +    +++++  +   +   LE + +       + P   +NL  L+ + +
Sbjct: 29  GIPTETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGL 87

Query: 157 EGCGNLESFPEG---GLPCAKLKEVVIRWCGRLEALPKGL-HNLKSLQKLTIGKGGLEE- 211
                L+  P G   GL    L ++ I    ++  L   +  +L +L+ L +G   L   
Sbjct: 88  RSN-RLKLIPLGVFTGLS--NLTKLDISEN-KIVILLDYMFQDLYNLKSLEVGDNDLVYI 143

Query: 212 -----DGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDI 266
                 GL  +L  L +     +  + I           L  LR+              I
Sbjct: 144 SHRAFSGLN-SLEQLTLEKC-NL--TSIPTE-ALSHLHGLIVLRLRHL-------NINAI 191

Query: 267 RMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPE---KGLPS 323
           R  +   L   L  L I  +P L+ ++ + +   NLTSL +  C  L   P    + L  
Sbjct: 192 RDYSFKRLY-RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYLAVRHLV- 248

Query: 324 SLLELWIGGCPL 335
            L  L +   P+
Sbjct: 249 YLRFLNLSYNPI 260

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 40.1 bits (94), Expect = 8e-04
 Identities = 23/135 (17%), Positives = 52/135 (38%), Gaps = 13/135 (9%)

Query: 101 PSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSG-LHNLRQLQEISIEGC 159
             LK L +     L+++        +L ++ I +C N+  +P   + +L  L+ +++   
Sbjct: 200 YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYN 258

Query: 160 GNLESFPEGGL-PCAKLKEVVIRWCGRLEALPKG-LHNLKSLQKLTIGKGGLEE------ 211
             + +     L    +L+E+ +    +L  +       L  L+ L +    L        
Sbjct: 259 -PISTIEGSMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVF 316

Query: 212 DGLPTNLHSLDIRGN 226
             +  NL +L +  N
Sbjct: 317 HSVG-NLETLILDSN 330

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 53.1 bits (128), Expect = 7e-08
 Identities = 43/322 (13%), Positives = 103/322 (31%), Gaps = 47/322 (14%)

Query: 6   SSLEILEIWSCRSLTYLAAV--QLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYT 63
             L  +E+++C +LT L      LP  ++ +++ C   I    +++  Q+ +        
Sbjct: 249 KDLTDVEVYNCPNLTKLPTFLKALP-EMQLINVACNRGISGEQLKDDWQALAD------- 300

Query: 64  SYLLEELCISSCRSLTSI-FSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLD 122
                         +  I    N L        +  +   L  L      +LE       
Sbjct: 301 --------APVGEKIQIIYIGYNNLKTFPVETSLQKMK-KLGMLECLYN-QLEGKLPAFG 350

Query: 123 NSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLP--CAKLKEVVI 180
           +   L ++++ Y +  +I  +      Q++ +S      L+  P        + +  +  
Sbjct: 351 SEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHN-KLKYIPNIFDAKSVSVMSAIDF 409

Query: 181 R-------WCGRLEALPKGLHNLKSLQKLTIGK---GGL--EEDGLPTNLHSLDIRGNM- 227
                        + L        ++  + +          E     + L S+++ GNM 
Sbjct: 410 SYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNML 469

Query: 228 -EIWKSMIEWG-QGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFS 285
            EI K+ ++   + F     L  + +       ++   +D R  T       L  +   S
Sbjct: 470 TEIPKNSLKDENENFKNTYLLTSIDLRFN---KLTKLSDDFRATTL----PYLVGI-DLS 521

Query: 286 FPNLERLSSSIVDLQNLTSLYL 307
           + +  +  +  ++   L    +
Sbjct: 522 YNSFSKFPTQPLNSSTLKGFGI 543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 49.7 bits (119), Expect = 9e-07
 Identities = 36/262 (13%), Positives = 81/262 (30%), Gaps = 49/262 (18%)

Query: 72  ISSCRSLTSIF-SKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETI 130
           +     L   +   +   A        N+  + ++   +   + ++     DN   L  +
Sbjct: 202 VMRLTKLRQFYMGNSPFVAE-------NICEAWENENSEYAQQYKTEDLKWDNLKDLTDV 254

Query: 131 HIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEAL- 189
            ++ C N+  LP+ L  L ++Q I++       S  +       L +       +++ + 
Sbjct: 255 EVYNCPNLTKLPTFLKALPEMQLINVACN-RGISGEQLKDDWQALAD--APVGEKIQIIY 311

Query: 190 -----------PKGLHNLKSLQKLTIG----KGGLEEDGLPTNLHSLDIRGNM--EIWKS 232
                         L  +K L  L       +G L   G    L SL++  N   EI  +
Sbjct: 312 IGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPAN 371

Query: 233 MIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAI-------FS 285
                        +  L         + + P      +     + ++++           
Sbjct: 372 F------CGFTEQVENLSFAHN---KLKYIPNIFDAKSV----SVMSAIDFSYNEIGSVD 418

Query: 286 FPNLERLSSSIVDLQNLTSLYL 307
             N + L  +     N++S+ L
Sbjct: 419 GKNFDPLDPTPFKGINVSSINL 440

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 17/210 (8%), Positives = 54/210 (25%), Gaps = 29/210 (13%)

Query: 120 TLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEG----CGNLESFPEGGLPCAKL 175
           +L+++  +  + +        +P  +  L +L+ +++             P+G       
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 176 KEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGL-------EEDGLPTNLHSLDIRGNME 228
           ++         +              +              +   +      +    N  
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSN-- 193

Query: 229 IWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPN 288
              ++    +   R + LR+  +                      +  +  +        
Sbjct: 194 ---NITFVSKAVMRLTKLRQFYMGNSPF-------------VAENICEAWENENSEYAQQ 237

Query: 289 LERLSSSIVDLQNLTSLYLVGCPKLKYFPE 318
            +       +L++LT + +  CP L   P 
Sbjct: 238 YKTEDLKWDNLKDLTDVEVYNCPNLTKLPT 267

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 37/174 (21%), Positives = 63/174 (36%), Gaps = 22/174 (12%)

Query: 72  ISSCRSLTSI-FSKNELSATLESLEVGNLPPSLKSLRVQGCS-------KLESIAETLDN 123
                +++SI  S N++S   + L        L S+ + G          L+   E   N
Sbjct: 429 PFKGINVSSINLSNNQISKFPKEL-FSTGS-PLSSINLMGNMLTEIPKNSLKDENENFKN 486

Query: 124 STSLETIHIFYCENMKILPSGLH--NLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIR 181
           +  L +I + +   +  L        L  L  I +    +   FP   L  + LK   IR
Sbjct: 487 TYLLTSIDLRFN-KLTKLSDDFRATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIR 544

Query: 182 WCGRL------EALPKGLHNLKSLQKLTIGKGGLEE--DGLPTNLHSLDIRGNM 227
                         P+G+    SL +L IG   + +  + +  N+  LDI+ N 
Sbjct: 545 NQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNISVLDIKDNP 598

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 51.9 bits (125), Expect = 8e-08
 Identities = 54/264 (20%), Positives = 95/264 (35%), Gaps = 49/264 (18%)

Query: 27  LPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNE 86
           +P S  RL+++  SN         +QS       + T   L +L +SS   L+     ++
Sbjct: 26  IPSSATRLELE--SN--------KLQSLPHGVFDKLTQ--LTKLSLSSNG-LSFKGCCSQ 72

Query: 87  LSATLESLEVGNLP--------------PSLKSLRVQGCSKLESIAE--TLDNSTSLETI 130
                 SL+  +L                 L+ L  Q    L+ ++E     +  +L  +
Sbjct: 73  SDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYL 131

Query: 131 HIFYCENMKILPSG-LHNLRQLQEISIEGCGNLESFPEGGL-PCAKLKEVVIRWCGRLEA 188
            I +  + ++  +G  + L  L+ + + G    E+F          L  + +  C +LE 
Sbjct: 132 DISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQ 189

Query: 189 LPKG-LHNLKSLQKLTIGKGGLEE------DGLPTNLHSLDIRGNMEIWKSMIEWGQGFH 241
           L     ++L SLQ L +               L  +L  LD   N  I     +  +  H
Sbjct: 190 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN-SLQVLDYSLNH-I--MTSKKQELQH 245

Query: 242 RFSSLRELRIEG----CDDDMVSF 261
             SSL  L +      C  +  SF
Sbjct: 246 FPSSLAFLNLTQNDFACTCEHQSF 269

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 52.2 bits (125), Expect = 1e-07
 Identities = 62/286 (21%), Positives = 95/286 (33%), Gaps = 73/286 (25%)

Query: 67  LEELCISSCRSLTSIFSKNELSATLESLEVGN-----LPPSLKSLRVQGCS--KLESIAE 119
              L +     LT++   + L A + +L + +     LP     LR    S  +L S+  
Sbjct: 42  NAVLNVGESG-LTTL--PDCLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPV 98

Query: 120 TLDNSTSLETIHIFYCENMKILPSGLHNLR--------------QLQEISIEGCGNLESF 165
                  L         ++  LPSGL  L                LQE+S+     L S 
Sbjct: 99  LPPGLLELSIFSN-PLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDN-QLASL 156

Query: 166 PEGGLPCAKLKEVVIRWCGRLEALPKGLHNLK-----------------SLQKLTIGKGG 208
           P      ++L ++      +L +LP     L+                  L KL      
Sbjct: 157 PAL---PSELCKLWAYNN-QLTSLPMLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNR 212

Query: 209 LEE-DGLPTNLHSLDIRGNM--EIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPED 265
           L     LP+ L  L + GN    +              S L+EL + G    + S P   
Sbjct: 213 LTSLPALPSGLKELIVSGNRLTSLPVLP----------SELKELMVSGNR--LTSLPML- 259

Query: 266 IRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCP 311
                    P+ L SL       L RL  S++ L + T++ L G P
Sbjct: 260 ---------PSGLLSL-SVYRNQLTRLPESLIHLSSETTVNLEGNP 295

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 51/323 (15%), Positives = 100/323 (30%), Gaps = 45/323 (13%)

Query: 26  QLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKN 85
            +P S K +D+              ++   S S   ++   L+ L +S C  + +I  K 
Sbjct: 29  DIPSSTKNIDLSFNP----------LKILKSYSFSNFSE--LQWLDLSRCE-IETIEDK- 74

Query: 86  ELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGL 145
                   L        L +L + G         +    TSLE +     +   +    +
Sbjct: 75  ----AWHGL------HHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPI 124

Query: 146 HNLRQLQEISIEGCGNLESFPEGGL--PCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLT 203
             L  L+++++     + S            L  V + +   ++ +     +L+ L++  
Sbjct: 125 GQLITLKKLNVAHN-FIHSCKLPAYFSNLTNLVHVDLSYN-YIQTITVN--DLQFLRENP 180

Query: 204 IGKGGL-----------EEDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIE 252
                L           ++      LH L +RGN      M    Q        R +  E
Sbjct: 181 QVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGE 240

Query: 253 GCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPK 312
             D+  +      I  G       ++    +    +          L N++++ L G   
Sbjct: 241 FKDERNLEIFEPSIMEGLCD---VTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV-S 296

Query: 313 LKYFPEKGLPSSLLELWIGGCPL 335
           +KY  +         L I  C L
Sbjct: 297 IKYLEDVPKHFKWQSLSIIRCQL 319

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 52/284 (18%), Positives = 84/284 (29%), Gaps = 50/284 (17%)

Query: 5   NSSLEILEIWSCRSLTYLAAVQLPRSLKRLDI-----------QCCSNIRTLTMEE-GIQ 52
           +   + L I  C+ L     + LP  LK L +               ++  L +    + 
Sbjct: 306 HFKWQSLSIIRCQ-LKQFPTLDLP-FLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALS 363

Query: 53  SSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQGCS 112
            S   S     +  L  L +S   +         +SA    L        L+ L  Q  S
Sbjct: 364 FSGCCSYSDLGTNSLRHLDLSFNGA-------IIMSANFMGL------EELQHLDFQH-S 409

Query: 113 KLESIAE--TLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGL 170
            L+ + E     +   L  + I Y             L  L  + + G    ++      
Sbjct: 410 TLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF 469

Query: 171 -PCAKLKEVVIRWCGRLEALPKG-LHNLKSLQKLTIGK---GGLEEDGLP--TNLHSLDI 223
                L  + +  C +LE +  G    L  LQ L +       L+        +L +LD 
Sbjct: 470 ANTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC 528

Query: 224 RGNMEIWKSMIEW--GQGFHRFSSLRELRIEG----CDDDMVSF 261
             N       IE   G   H   SL    +      C  +   F
Sbjct: 529 SFN------RIETSKGILQHFPKSLAFFNLTNNSVACICEHQKF 566

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 56/289 (19%), Positives = 103/289 (35%), Gaps = 41/289 (14%)

Query: 67  LEELCISSCRSLTSIF-SKNELSATLESLEVGNLPPSLKSLRVQGCSKLESI--AETLDN 123
                 S   SL ++   + +L+ +LES  +G L  +LK L V     + S        N
Sbjct: 95  FSPGSFSGLTSLENLVAVETKLA-SLESFPIGQLI-TLKKLNVAHN-FIHSCKLPAYFSN 151

Query: 124 STSLETIHIFYCENMKILPSGLHNLRQLQEISIE---GCGNLESFPEGGLPCAKLKEVVI 180
            T+L  + + Y     I  + L  LR+  ++++        ++   +      KL E+ +
Sbjct: 152 LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTL 211

Query: 181 RWCGRLEALPKG-LHNLKSLQKLTIGKGGLEE------------DGLP-TNLHSLDIRGN 226
           R       + K  L NL  L    +  G  ++            +GL    +    +   
Sbjct: 212 RGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYT 271

Query: 227 MEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSF 286
            +    +++    FH  +++  + + G            I+    +P      SL+I   
Sbjct: 272 NDFSDDIVK----FHCLANVSAMSLAGVS----------IKYLEDVPKHFKWQSLSI-IR 316

Query: 287 PNLERLSSSIVDLQNLTSLYLVGCPKLKYFPEKGLPSSLLELWIGGCPL 335
             L++  +   DL  L SL L        F +  LP SL  L +    L
Sbjct: 317 CQLKQFPTL--DLPFLKSLTLTMNKGSISFKKVALP-SLSYLDLSRNAL 362

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 54/291 (18%), Positives = 99/291 (34%), Gaps = 44/291 (15%)

Query: 27  LPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNE 86
           LP ++  L++              ++   +++  RY+   L  L +            N 
Sbjct: 23  LPTNITVLNLTHNQ----------LRRLPAANFTRYSQ--LTSLDVGF----------NT 60

Query: 87  LSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLH 146
           +S  LE      L P LK L +Q     +   +T    T+L  +H+      KI  +   
Sbjct: 61  IS-KLEPELCQKL-PMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFV 118

Query: 147 NLRQLQEISIEGCGNLESFPEGGL-PCAKLKEVVIRWCGRLEALPK---GLHNLKSLQKL 202
             + L  + +     L S   G       L+E+++    +++AL      +    SL+KL
Sbjct: 119 KQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSNN-KIQALKSEELDIFANSSLKKL 176

Query: 203 TIGK---GGLEEDGLP--TNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDD 257
            +                  L  L +    ++  S+ E        +S+R L +      
Sbjct: 177 ELSSNQIKEFSPGCFHAIGRLFGLFLNNV-QLGPSLTEKLCLELANTSIRNLSLSNS--Q 233

Query: 258 MVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLS-SSIVDLQNLTSLYL 307
           + +           L   T+LT L   S+ NL  +   S   L  L   +L
Sbjct: 234 LSTTSNTTFL---GLKW-TNLTML-DLSYNNLNVVGNDSFAWLPQLEYFFL 279

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 30/213 (14%), Positives = 68/213 (31%), Gaps = 35/213 (16%)

Query: 98  NLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIE 157
           +LP ++  L +         A      + L ++ + +    K+ P     L  L+ ++++
Sbjct: 22  DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ 81

Query: 158 GCGNLESFPEGGL-PCAKLKEVVIRWCGRLEALPKG-LHNLKSLQKLTIGKGGLEEDGLP 215
               L    +     C  L E+ +     ++ +        K+L  L +           
Sbjct: 82  HN-ELSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSH--------- 130

Query: 216 TNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLP 275
             L S  +                  +  +L+EL +      + +   E++ +       
Sbjct: 131 NGLSSTKL--------------GTQVQLENLQELLLSNN--KIQALKSEELDIFA----N 170

Query: 276 TSLTSLAIFSFPNLERLS-SSIVDLQNLTSLYL 307
           +SL  L   S   ++  S      +  L  L+L
Sbjct: 171 SSLKKL-ELSSNQIKEFSPGCFHAIGRLFGLFL 202

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.5 bits (103), Expect = 7e-05
 Identities = 51/332 (15%), Positives = 86/332 (25%), Gaps = 74/332 (22%)

Query: 72  ISSCRSLTSI-FSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETI 130
                +L  +  S N++ A            SLK L +      E           L  +
Sbjct: 141 QVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGL 200

Query: 131 HIFYCENMKILPSGL---HNLRQLQEISIEGCGNLESFPEG---GLPCAKLKEV------ 178
            +   +    L   L        ++ +S+     L +       GL    L  +      
Sbjct: 201 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNS-QLSTTSNTTFLGLKWTNLTMLDLSYNN 259

Query: 179 -------VIRWCGRLEAL-----------PKGLHNLKSLQKLTIG----KGGLEEDGLP- 215
                     W  +LE                LH L +++ L +     K  +    LP 
Sbjct: 260 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPK 319

Query: 216 ---------TNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDI 266
                      L  L++  N       I+    F    +L+ L +      + +   E  
Sbjct: 320 IDDFSFQWLKCLEHLNMEDND---IPGIK-SNMFTGLINLKYLSLSNSFTSLRTLTNETF 375

Query: 267 RMGTTLPL---------PTSLTSLAIFSFPNLERL------------SSSIVDLQNLTSL 305
                 PL          + + S A     +LE L                  L+N+  +
Sbjct: 376 VSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEI 435

Query: 306 YLVGCPKLKYFPEKGLP--SSLLELWIGGCPL 335
           YL    K             SL  L +    L
Sbjct: 436 YLSYN-KYLQLTRNSFALVPSLQRLMLRRVAL 466

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.0 bits (120), Expect = 7e-07
 Identities = 47/320 (14%), Positives = 98/320 (30%), Gaps = 40/320 (12%)

Query: 27  LPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNE 86
           LP S K LD+              ++   S S   +    L+ L +S            E
Sbjct: 26  LPFSTKNLDLSFNP----------LRHLGSYSFFSFPE--LQVLDLSR----------CE 63

Query: 87  LSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLH 146
           +  T+E     +L   L +L + G              +SL+ +         +    + 
Sbjct: 64  IQ-TIEDGAYQSL-SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG 121

Query: 147 NLRQLQEISIEGCGNLESFPEGGL--PCAKLKEVVIRWCGRLEALPKG-LHNLKSLQKLT 203
           +L+ L+E+++     ++SF           L+ + +    +++++    L  L  +  L 
Sbjct: 122 HLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLN 179

Query: 204 IG--------KGGLEEDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCD 255
           +                     LH L +R N +    M    QG       R +  E  +
Sbjct: 180 LSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239

Query: 256 DDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKY 315
           +  +    +    G             +  + +   +      L N++S  LV    ++ 
Sbjct: 240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD--DIIDLFNCLTNVSSFSLVSV-TIER 296

Query: 316 FPEKGLPSSLLELWIGGCPL 335
             +         L +  C  
Sbjct: 297 VKDFSYNFGWQHLELVNCKF 316

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 31/164 (18%), Positives = 63/164 (38%), Gaps = 15/164 (9%)

Query: 71  CISSCRSLTSIFSKNELSATLESLEV-GNLPPSLKSLRVQGCSKLESIAETLDNSTSLET 129
           C+    ++T    +          ++  NLP S K+L +         + +  +   L+ 
Sbjct: 3   CVEVVPNITYQCMELNFY------KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQV 56

Query: 130 IHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGL-PCAKLKEVVIRWCGRLEA 188
           + +  CE   I      +L  L  + + G   ++S   G     + L+++V         
Sbjct: 57  LDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETNLASL 115

Query: 189 LPKGLHNLKSLQKLTIGKGGLEEDGLP------TNLHSLDIRGN 226
               + +LK+L++L +    ++   LP      TNL  LD+  N
Sbjct: 116 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 29/165 (17%), Positives = 52/165 (31%), Gaps = 13/165 (7%)

Query: 72  ISSCRSLTSI-FSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETI 130
                 L  + F  + L    E     +L  +L  L +       +     +  +SLE +
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLR-NLIYLDISHTHTRVAFNGIFNGLSSLEVL 450

Query: 131 HIFYCE-NMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLP-CAKLKEVVIRWCGRLEA 188
            +         LP     LR L  + +  C  LE          + L+ + +       +
Sbjct: 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHN-NFFS 508

Query: 189 LPKG-LHNLKSLQKLTIGK---GGLEED---GLPTNLHSLDIRGN 226
           L       L SLQ L          ++      P++L  L++  N
Sbjct: 509 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 553

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 44/288 (15%), Positives = 83/288 (28%), Gaps = 41/288 (14%)

Query: 67  LEELCISSCRSLTSIFSKNELSATLESLEVGNL---------PPSLKSLRVQGCSKLESI 117
           +    + S  ++  +   +      + LE+ N            SLK L           
Sbjct: 284 VSSFSLVSV-TIERVKDFSYNFG-WQHLELVNCKFGQFPTLKLKSLKRLTFTSNK--GGN 339

Query: 118 AETLDNSTSLETIHIFYCENMKI--LPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKL 175
           A +  +  SLE + +                    L+ + +     + +     L   +L
Sbjct: 340 AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQL 398

Query: 176 KEVVIRWCGRLEALPKG-LHNLKSLQKLTIGKGGLEE------DGLPTNLHSLDIRGNME 228
           + +  +     +        +L++L  L I             +GL  +L  L + GN  
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS-SLEVLKMAGNS- 456

Query: 229 IWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPN 288
            ++        F    +L  L +  C   +    P      +      SL  L   S  N
Sbjct: 457 -FQENFLPDI-FTELRNLTFLDLSQCQ--LEQLSPTAFNSLS------SLQVL-NMSHNN 505

Query: 289 LERLS-SSIVDLQNLTSLYLVGCPKLKYFPE---KGLPSSLLELWIGG 332
              L       L +L  L       +    +   +  PSSL  L +  
Sbjct: 506 FFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQ 552

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 49.9 bits (119), Expect = 8e-07
 Identities = 52/364 (14%), Positives = 113/364 (31%), Gaps = 58/364 (15%)

Query: 4   TNSSLEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYT 63
            + + E + +  C + T     +   +L+ L ++             + +    +   Y 
Sbjct: 48  DSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRA-------AMFNLIPENWGGYV 100

Query: 64  SYLLEELCISSCRSLTSI-FSKNELS-ATLESLEVGNLPPSLKSLRVQGCSKL--ESIAE 119
           +  + E+  ++ R L S+ F +  +S   L+ L        L++L++  CS    + +  
Sbjct: 101 TPWVTEIS-NNLRQLKSVHFRRMIVSDLDLDRLAKARA-DDLETLKLDKCSGFTTDGLLS 158

Query: 120 TLDNSTSLETIHIFYCENMKILPSGLH----NLRQLQEISIEGCG----NLESFPEGGLP 171
            + +   ++T+ +      +     LH    +   L+ ++         + +        
Sbjct: 159 IVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARN 218

Query: 172 CAKLKEVVIRWCGRLE--ALPKGLHNLKSLQKLTIGKGGLEEDGL--PTNLHSLDIRGNM 227
           C  L  V +     LE     K   NL+     ++ +     +          L   G  
Sbjct: 219 CRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLS 278

Query: 228 EIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFP 287
            +  + +     F   + +R+L +                      L T      I   P
Sbjct: 279 YMGPNEMP--ILFPFAAQIRKLDLLYA------------------LLETEDHCTLIQKCP 318

Query: 288 NLERL--SSSIVD---------LQNLTSLYLVGCPKLKYFPEKGLPSSL--LELWIGGCP 334
           NLE L   + I D          + L  L +      +   ++    S   L     GC 
Sbjct: 319 NLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQ 378

Query: 335 LIEE 338
            +E 
Sbjct: 379 ELEY 382

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 48.4 bits (115), Expect = 2e-06
 Identities = 36/272 (13%), Positives = 80/272 (29%), Gaps = 33/272 (12%)

Query: 2   CDTNSSLEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRR 61
                 L  L +                 +++LD+        L  E+         +  
Sbjct: 266 LVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYA----LLETEDHCTLIQKCPN-- 319

Query: 62  YTSYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETL 121
                LE L   +      +    +    L+ L +            +G      +    
Sbjct: 320 -----LEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALA 374

Query: 122 DNSTSLETIHIFYC----ENMKILPSGLHNLRQLQEISIEGCGNL------ESFPEGGLP 171
                LE + ++      E+++ + + L NL   + + ++    +             + 
Sbjct: 375 QGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIG 434

Query: 172 CAKLKEVVIRWCGRL---EALPKGLHNLKSLQKLTIGKGGLEEDGLP------TNLHSLD 222
           C KL+               L        +++ + +G  G  ++GL        NL  L+
Sbjct: 435 CKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLE 494

Query: 223 IRGNMEIWKSMIEWGQGFHRFSSLRELRIEGC 254
           +RG     +++        +  SLR L ++G 
Sbjct: 495 MRGCCFSERAIAA---AVTKLPSLRYLWVQGY 523

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 34/284 (11%), Positives = 84/284 (29%), Gaps = 40/284 (14%)

Query: 6   SSLEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTME----EGIQSSSSSSSRR 61
            SL  +++     L  +   +   +L+       +    +  +       +         
Sbjct: 220 RSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSY 279

Query: 62  YTSYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETL 121
                +  L       +  +     L  T +   +    P+L+ L  +       +    
Sbjct: 280 MGPNEMPIL-FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLA 338

Query: 122 DNSTSLETIHIFYCENMKILPSGL------------HNLRQLQEISIEGCG-NLESFPEG 168
                L+ + I    + + +                   ++L+ +++       ES    
Sbjct: 339 QYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESI 398

Query: 169 GLPCAKLKEVVIRWCGR------------LEALPKGLHNLKSLQKLTIGKGGLEEDGL-- 214
           G     L +  +    R            + +L  G   L+      + +GGL + GL  
Sbjct: 399 GTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFA-FYLRQGGLTDLGLSY 457

Query: 215 ----PTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGC 254
                 N+  + +    E  + ++E+ +G      L++L + GC
Sbjct: 458 IGQYSPNVRWMLLGYVGESDEGLMEFSRGCPN---LQKLEMRGC 498

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.8 bits (119), Expect = 9e-07
 Identities = 54/375 (14%), Positives = 111/375 (29%), Gaps = 61/375 (16%)

Query: 4   TNSSLEILEIWSCR--SLTYLAAVQLPRSLKRLDIQC--CSNIRTLTMEEGIQSSSSSSS 59
              +L    + +    S   +   +     + + ++    S         G  S++ S S
Sbjct: 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKS 231

Query: 60  RRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESI-A 118
           + ++  L   +  +        F  + +    ++   G    S++ L +     + S+ +
Sbjct: 232 QAFSLILAHHIMGAG-------FGFHNIKDPDQNTFAGLARSSVRHLDLSHG-FVFSLNS 283

Query: 119 ETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEG---GLPCAKL 175
              +    L+ +++ Y +  KI     + L  LQ +++     L         GLP  K+
Sbjct: 284 RVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN-LLGELYSSNFYGLP--KV 340

Query: 176 KEVVIRWCGRLEALPKG-LHNLKSLQKLTIGKGGLEEDGLPTNLHSLDIRGN-------- 226
             + ++    +  +       L+ LQ L +    L       ++  + + GN        
Sbjct: 341 AYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKI 399

Query: 227 ---------MEIWKSMIEWGQGFHRFSSLREL-----RIEGCDDDMVSFPPEDIRM---- 268
                     E     ++      R   L+ L     R   C  D        +      
Sbjct: 400 NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLG 459

Query: 269 --GTTLPLPTSLTSLAIFSFPNLERL-----------SSSIVDLQNLTSLYLVGCPKLKY 315
                L   T L         +L+ L                 L  L  L L    +L  
Sbjct: 460 ENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSN-RLTV 518

Query: 316 FPEKGLPSSLLELWI 330
                LP++L  L I
Sbjct: 519 LSHNDLPANLEILDI 533

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 48.8 bits (117), Expect = 9e-07
 Identities = 35/254 (13%), Positives = 72/254 (28%), Gaps = 39/254 (15%)

Query: 116 SIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGL-PCAK 174
           +I E   N    +   +      + L S   +   ++E+ + G   L       L P  K
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTK 59

Query: 175 LKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEEDGLPTNLHSLDIRGN------ME 228
           L+ + +     L      L +L +L+ L +    ++E  +  ++ +L    N        
Sbjct: 60  LELLNLSSN-VLYETL-DLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCS 117

Query: 229 IWKS------------MIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMG------- 269
             +             M+         S ++ L ++  + D V+F               
Sbjct: 118 RGQGKKNIYLANNKITMLRDLD-EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 270 -----TTLPLPTSLTSLAI--FSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPEK-GL 321
                  +        L     S   L  +         +T + L    KL    +    
Sbjct: 177 QYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRF 235

Query: 322 PSSLLELWIGGCPL 335
             +L    + G   
Sbjct: 236 SQNLEHFDLRGNGF 249

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 42/240 (17%), Positives = 83/240 (34%), Gaps = 48/240 (20%)

Query: 98  NLPPSLKSLRVQGCSKLESI-AETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISI 156
           +LPP    L +Q  +K+  I      N  +L T+ +   +  KI P     L +L+ + +
Sbjct: 49  DLPPDTALLDLQN-NKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107

Query: 157 EGCGNLESFPEGGLPCAKLKEVVIRWCGRLEALPKGL----------------------- 193
                L+  PE       L+E+ +     +  + K +                       
Sbjct: 108 SKN-QLKELPEKMPK--TLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSSGIE 163

Query: 194 ----HNLKSLQKLTIGKGGLEE--DGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLR 247
                 +K L  + I    +     GLP +L  L + GN +I  + ++        ++L 
Sbjct: 164 NGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGN-KI--TKVD-AASLKGLNNLA 219

Query: 248 ELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYL 307
           +L +              +  G+    P  L  L   +   L ++   + D + +  +YL
Sbjct: 220 KLGLSFN-------SISAVDNGSLANTP-HLREL-HLNNNKLVKVPGGLADHKYIQVVYL 270

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 34/202 (16%), Positives = 63/202 (31%), Gaps = 46/202 (22%)

Query: 61  RYTSYLLEELCISSCRSLTSIF-SKNELSATLESLEVGNLPPSLKSLRVQGCSKLESI-A 118
              S  +E       + L+ I  +   ++    ++  G LPPSL  L + G  K+  + A
Sbjct: 156 PLKSSGIENGAFQGMKKLSYIRIADTNIT----TIPQG-LPPSLTELHLDGN-KITKVDA 209

Query: 119 ETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEV 178
            +L    +L  + + +     +    L N   L+E+ +                      
Sbjct: 210 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN------------------- 250

Query: 179 VIRWCGRLEALPKGLHNLKSLQKL--------TIGKGGLEEDGLPTNLHSL---DIRGNM 227
                 +L  +P GL + K +Q +         IG       G  T   S     +  N 
Sbjct: 251 ------KLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN- 303

Query: 228 EIWKSMIEWGQGFHRFSSLREL 249
            +    I+    F        +
Sbjct: 304 PVQYWEIQPS-TFRCVYVRAAV 324

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 47.5 bits (113), Expect = 3e-06
 Identities = 34/144 (23%), Positives = 52/144 (36%), Gaps = 21/144 (14%)

Query: 98  NLPPSLKSLRVQGCSKLESI-AETLDNSTSLETIHIFYCENMKILPSG-LHNLRQLQEIS 155
           +LP +   LR    +KL  I          LE I I   + ++++ +    NL +L EI 
Sbjct: 27  DLPRNAIELRFVL-TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85

Query: 156 IEGCGNLESFPEG---GLPCAKLKEVVIRWCGRLEALPKGLH-NLKSLQKL--------- 202
           IE   NL          LP   L+ ++I   G ++ LP     +      L         
Sbjct: 86  IEKANNLLYINPEAFQNLP--NLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIH 142

Query: 203 TIGKGGLEEDGLPTNLHSLDIRGN 226
           TI +      GL      L +  N
Sbjct: 143 TIERNSF--VGLSFESVILWLNKN 164

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 57/356 (16%), Positives = 117/356 (32%), Gaps = 84/356 (23%)

Query: 6   SSLEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSY 65
           +      +     +T   +      +  L       I+++   +G++  ++         
Sbjct: 24  AEKMKTVLGKTN-VTDTVSQTDLDQVTTLQADRL-GIKSI---DGVEYLNN--------- 69

Query: 66  LLEELCISSCRSLTSI-------------FSKNELSATLESLEVGNLPPSLKSLRVQGCS 112
            L ++  S+ + LT I              + N+++  +  L   NL  +L  L +    
Sbjct: 70  -LTQINFSNNQ-LTDITPLKNLTKLVDILMNNNQIA-DITPL--ANLT-NLTGLTLFNN- 122

Query: 113 KLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPC 172
           ++  I + L N T+L  + +       I  S L  L  LQ++S  G    +  P   L  
Sbjct: 123 QITDI-DPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSF-GNQVTDLKPLANLT- 177

Query: 173 AKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGK---GGLEEDGLPTNLHSLDIRGNMEI 229
             L+ + I    ++  +   L  L +L+ L         +   G+ TNL  L + GN   
Sbjct: 178 -TLERLDISSN-KVSDIS-VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ-- 232

Query: 230 WKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSL-AIFSFPN 288
               ++        ++L +L +                          +++L  +     
Sbjct: 233 ----LKDIGTLASLTNLTDLDLANN----------------------QISNLAPLSGLTK 266

Query: 289 LERLS---------SSIVDLQNLTSLYLVGCPKLKYFPEKGLPSSLLELWIGGCPL 335
           L  L          S +  L  LT+L L    +L+         +L  L +    +
Sbjct: 267 LTELKLGANQISNISPLAGLTALTNLELNEN-QLEDISPISNLKNLTYLTLYFNNI 321

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 52/278 (18%), Positives = 97/278 (34%), Gaps = 60/278 (21%)

Query: 67  LEELCISSCRSLTSIFSKNELSATLESLEVGNLP---------PSLKSLRVQGCSKLESI 117
           L  L +SS   ++ I + + L++ L+ L  GN            +L+ L +    K+  I
Sbjct: 136 LNRLELSSNT-ISDISALSGLTS-LQQLSFGNQVTDLKPLANLTTLERLDISSN-KVSDI 192

Query: 118 AETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPE-GGLPCAKLK 176
              L   T+LE++     +   I  + L  L  L E+S+ G   L+       L    L 
Sbjct: 193 -SVLAKLTNLESLIATNNQISDI--TPLGILTNLDELSLNGN-QLKDIGTLASLT--NLT 246

Query: 177 EVVIRWCGRLEALPKGLHNLKSLQKLTIGK---GGLEEDGLPTNLHSLDIRGNMEIWKSM 233
           ++ +    ++  L   L  L  L +L +G      +      T L +L++  N       
Sbjct: 247 DLDLANN-QISNLA-PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQ------ 298

Query: 234 IEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSL-----------A 282
           +E         +L  L +   +          I   + +   T L  L           +
Sbjct: 299 LEDISPISNLKNLTYLTLYFNN----------ISDISPVSSLTKLQRLFFYNNKVSDVSS 348

Query: 283 IFSFPNLERLS---------SSIVDLQNLTSLYLVGCP 311
           + +  N+  LS         + + +L  +T L L    
Sbjct: 349 LANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQA 386

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 48/239 (20%), Positives = 82/239 (34%), Gaps = 47/239 (19%)

Query: 98  NLPPSLKSLRVQGCSKLESI-AETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISI 156
            + P    L +Q    +  +  +       L  + +   +  KI       LR+LQ++ I
Sbjct: 51  EISPDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109

Query: 157 EGCGNLESFPEGGLPCAKLKEVVIRWCGRLEALPKG-LHNLKSLQKLT-----IGKGGLE 210
               +L   P        L E+ I    R+  +PKG    L+++  +      +   G E
Sbjct: 110 SKN-HLVEIPPNLPS--SLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFE 165

Query: 211 ED----------------------GLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRE 248
                                    LP  L+ L +  N +I    IE  +   R+S L  
Sbjct: 166 PGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHN-KI--QAIE-LEDLLRYSKLYR 221

Query: 249 LRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYL 307
           L +              I  G+   LP +L  L +     L R+ + + DL+ L  +YL
Sbjct: 222 LGLGHN-------QIRMIENGSLSFLP-TLRELHL-DNNKLSRVPAGLPDLKLLQVVYL 271

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 30/195 (15%), Positives = 63/195 (32%), Gaps = 36/195 (18%)

Query: 5   NSSLEILEIWSCRSLT---YLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRR 61
           NS+L  L +  C   +       +     L  L++  C +     ++  +   S +    
Sbjct: 141 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET---- 196

Query: 62  YTSYLLEELCISSCRSLTSIFSKNELSATLESLEVGNL----------------PPSLKS 105
                + +L +S  R        + L     +L   +L                   L+ 
Sbjct: 197 -----ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH 251

Query: 106 LRVQGCSKLESIA-ETLDNSTSLETIHIFYC---ENMKILPSGLHNLR----QLQEISIE 157
           L +  C  +       L    +L+T+ +F       +++L   L +L+        I+  
Sbjct: 252 LSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTIARP 311

Query: 158 GCGNLESFPEGGLPC 172
             GN ++    G+ C
Sbjct: 312 TIGNKKNQEIWGIKC 326

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 44.5 bits (105), Expect = 3e-05
 Identities = 38/259 (14%), Positives = 85/259 (32%), Gaps = 26/259 (10%)

Query: 16  CRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSC 75
           C+              + LD+   +    +T     Q   +    R           S  
Sbjct: 36  CKRW--YRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPF 93

Query: 76  RSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYC 135
           R      S + +  +     + +    L++L ++G    + I  TL  +++L  +++  C
Sbjct: 94  RVQHMDLSNSVIEVS-TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC 152

Query: 136 ENM--KILPSGLHNLRQLQEISIEGCGNLESFPEGGL---PCAKLKEVVIRWCGR----- 185
                  L + L +  +L E+++  C +                + ++ +    +     
Sbjct: 153 SGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS 212

Query: 186 -LEALPKGLHNLKSL-----QKLTIGKGGLEEDGLPTNLHSLDIRGNMEI-WKSMIEWGQ 238
            L  L +   NL  L       L       +E      L  L +    +I  ++++E G+
Sbjct: 213 DLSTLVRRCPNLVHLDLSDSVMLK--NDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGE 270

Query: 239 GFHRFSSLRELRIEGCDDD 257
                 +L+ L++ G   D
Sbjct: 271 I----PTLKTLQVFGIVPD 285

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.5 bits (106), Expect = 3e-05
 Identities = 51/356 (14%), Positives = 105/356 (29%), Gaps = 80/356 (22%)

Query: 6   SSLEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSY 65
            S+  L +   + +  +  ++   +L+ L++        +T    + +            
Sbjct: 44  ESITKLVVAGEK-VASIQGIEYLTNLEYLNLNGNQ----ITDISPLSNLVK--------- 89

Query: 66  LLEELCISSCRSLTSIFSKNELSATLESLEVGN-----LPP-----SLKSLRVQGCSKLE 115
            L  L I + + +T I +   L+  L  L +       + P      + SL +     L 
Sbjct: 90  -LTNLYIGTNK-ITDISALQNLT-NLRELYLNEDNISDISPLANLTKMYSLNLGANHNLS 146

Query: 116 SIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPE-GGLPCAK 174
            +   L N T L  + +   +   +  + + NL  L  +S+     +E       L    
Sbjct: 147 DL-SPLSNMTGLNYLTVTESKVKDV--TPIANLTDLYSLSLNYN-QIEDISPLASLT--S 200

Query: 175 LKEVVIRWCGRLEALPKGLHNLKSLQKLTIGK---GGLEEDGLPTNLHSLDIRGNMEIWK 231
           L         ++  +   + N+  L  L IG      L      + L  L+I  N     
Sbjct: 201 LHYFTAYVN-QITDIT-PVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQ---- 254

Query: 232 SMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFS-FPNLE 290
             I         + L+ L +                          ++ +++ +    L 
Sbjct: 255 --ISDINAVKDLTKLKMLNVGS----------------------NQISDISVLNNLSQLN 290

Query: 291 RLS-----------SSIVDLQNLTSLYLVGCPKLKYFPEKGLPSSLLELWIGGCPL 335
            L              I  L NLT+L+L     +         S +         +
Sbjct: 291 SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRPLASLSKMDSADFANQVI 345

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 42/253 (16%), Positives = 74/253 (29%), Gaps = 50/253 (19%)

Query: 67  LEELCISSCRSLTSIF-SKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNST 125
           L +L +S    LT +  ++N L+     ++V +    L  L      K+  +   +   T
Sbjct: 118 LTKLDVSQNPLLTYLNCARNTLT----EIDVSHNT-QLTELDCHLNKKITKL--DVTPQT 170

Query: 126 SLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGR 185
            L T+    C   KI    +   + L  ++ +   N+           +L  +      +
Sbjct: 171 QLTTL---DCSFNKITELDVSQNKLLNRLNCDTN-NITKLDLNQNI--QLTFLDCSSN-K 223

Query: 186 LEALPKGLHNLKSLQKLTIGKGGLEE--DGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRF 243
           L  +   +  L  L         L E      + L +L            I+        
Sbjct: 224 LTEID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTD---LLEID----LTHN 274

Query: 244 SSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLT 303
           + L   + EGC                       +  L +     L  L         +T
Sbjct: 275 TQLIYFQAEGC---------------------RKIKELDVTHNTQLYLLD---CQAAGIT 310

Query: 304 SLYLVGCPKLKYF 316
            L L   PKL Y 
Sbjct: 311 ELDLSQNPKLVYL 323

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 44.0 bits (104), Expect = 4e-05
 Identities = 51/313 (16%), Positives = 103/313 (32%), Gaps = 73/313 (23%)

Query: 71  CISSC--RSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESI-AETLDNSTSL 127
            I      SL SI S               L  ++KSL +   +++  I    L    +L
Sbjct: 34  GICKGSSGSLNSIPS--------------GLTEAVKSLDLSN-NRITYISNSDLQRCVNL 78

Query: 128 ETIHIFYCENMKILPSGL-HNLRQLQEISIEGC----------------------GN-LE 163
           + + +     +  +      +L  L+ + +                         GN  +
Sbjct: 79  QALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK 137

Query: 164 SFPEGGL--PCAKLKEVVIRWCGRLEALPKG-LHNLKSLQKLTIGKGGLEE------DGL 214
           +  E  L     KL+ + +        + +     L  L++L I    L+         +
Sbjct: 138 TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSI 197

Query: 215 PTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPL 274
             N+  L +    +    ++         SS+  L +   D D+ +F   ++  G T  L
Sbjct: 198 -QNVSHLILHMK-QH--ILLLEI-FVDVTSSVECLELR--DTDLDTFHFSELSTGETNSL 250

Query: 275 P--TSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPE---KGLPSSLLELW 329
               +  ++ I +  +L ++   +  +  L  L      +LK  P+     L  SL ++W
Sbjct: 251 IKKFTFRNVKI-TDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLT-SLQKIW 307

Query: 330 IGG------CPLI 336
           +        CP I
Sbjct: 308 LHTNPWDCSCPRI 320

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 43.6 bits (102), Expect = 7e-05
 Identities = 35/203 (17%), Positives = 79/203 (38%), Gaps = 33/203 (16%)

Query: 67  LEELCISSCRSLTSIFSKNELSATLESLEVGN----------LPPSLKSLRVQGCSKLES 116
             +  +   +S+T   ++NEL+ +++ +   N            P++  L + G  KL  
Sbjct: 23  TIKDNLKK-KSVTDAVTQNELN-SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGN-KLTD 79

Query: 117 IAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCG--NLESFPEGGLPCAK 174
           I + L N  +L  + +   +   +  S L +L++L+ +S+E  G  ++           +
Sbjct: 80  I-KPLTNLKNLGWLFLDENKIKDL--SSLKDLKKLKSLSLEHNGISDINGLVH----LPQ 132

Query: 175 LKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEE-DGLP--TNLHSLDIRGNMEIWK 231
           L+ + +    ++  +   L  L  L  L++    + +   L   T L +L +  N     
Sbjct: 133 LESLYLGNN-KITDIT-VLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKN----- 185

Query: 232 SMIEWGQGFHRFSSLRELRIEGC 254
             I   +      +L  L +   
Sbjct: 186 -HISDLRALAGLKNLDVLELFSQ 207

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 43.2 bits (102), Expect = 8e-05
 Identities = 52/291 (17%), Positives = 88/291 (30%), Gaps = 68/291 (23%)

Query: 27  LPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNE 86
           +P + + L++    N         IQ   + + R      LE L +     +  I     
Sbjct: 73  IPSNTRYLNLM--EN--------NIQMIQADTFRHLHH--LEVLQLGRNS-IRQI----- 114

Query: 87  LSATLESLEVGNLPPSLKSLRVQGCSKLESI-AETLDNSTSLETIHIFYCENMKILPSGL 145
                  L       SL +L +     L  I +   +  + L  + +       I     
Sbjct: 115 EVGAFNGL------ASLNTLELFDN-WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAF 167

Query: 146 HNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIG 205
           + +  L  + +     LE   EG                           L +L+ L +G
Sbjct: 168 NRVPSLMRLDLGELKKLEYISEG-----------------------AFEGLFNLKYLNLG 204

Query: 206 KGGLEE----DGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSF 261
              +++      L   L  L++ GN       I  G  FH  SSL++L +      +   
Sbjct: 205 MCNIKDMPNLTPLV-GLEELEMSGN-HF--PEIRPGS-FHGLSSLKKLWVMNS--QVSLI 257

Query: 262 PPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVD-LQNLTSLYLVGCP 311
                     L    SL  L +    NL  L   +   L+ L  L+L   P
Sbjct: 258 ERNAFD---GLA---SLVELNLAH-NNLSSLPHDLFTPLRYLVELHLHHNP 301

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 43/220 (19%), Positives = 79/220 (35%), Gaps = 26/220 (11%)

Query: 98  NLPPSLKSLRVQGCSKLESI-AETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISI 156
            +P + + + + G +++  + A +     +L  + +      +I  +    L  L+++ +
Sbjct: 29  GIPAASQRIFLHG-NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87

Query: 157 EGCGNLESFPEGGL-PCAKLKEVVIRWCGRLEALPKG-LHNLKSLQKLTIGKGGLEE--- 211
                L S          +L  + +  C  L+ L  G    L +LQ L +    L+    
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDNALQALPD 146

Query: 212 ---DGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRM 268
                L  NL  L + GN  I  S +     F    SL  L +      +    P     
Sbjct: 147 DTFRDLG-NLTHLFLHGN-RI--SSVPER-AFRGLHSLDRLLLHQN--RVAHVHP----- 194

Query: 269 GTTLPLPTSLTSLAIFSFPNLERLSSSIVD-LQNLTSLYL 307
                L   L +L +F+  NL  L +  +  L+ L  L L
Sbjct: 195 HAFRDLG-RLMTLYLFA-NNLSALPTEALAPLRALQYLRL 232

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 35/254 (13%), Positives = 72/254 (28%), Gaps = 39/254 (15%)

Query: 116 SIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGL-PCAK 174
           +I E   N    +   +      + L S   +   ++E+ + G   L       L P  K
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTK 59

Query: 175 LKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEEDGLPTNLHSLDIRGN------ME 228
           L+ + +     L      L +L +L+ L +    ++E  +  ++ +L    N        
Sbjct: 60  LELLNLSSN-VLYETL-DLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCS 117

Query: 229 IWKS------------MIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMG------- 269
             +             M+         S ++ L ++  + D V+F               
Sbjct: 118 RGQGKKNIYLANNKITMLRDLD-EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 270 -----TTLPLPTSLTSLAI--FSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPEK-GL 321
                  +        L     S   L  +         +T + L    KL    +    
Sbjct: 177 QYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRF 235

Query: 322 PSSLLELWIGGCPL 335
             +L    + G   
Sbjct: 236 SQNLEHFDLRGNGF 249

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 41/312 (13%), Positives = 93/312 (29%), Gaps = 66/312 (21%)

Query: 39  CSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEVGN 98
            SN++   +   +     +       +  E++ +++ + +T  F  + +   L +  + +
Sbjct: 14  DSNLQYDCVFYDVHIDMQTQD---VYFGFEDITLNNQKIVT--FKNSTMR-KLPAALLDS 67

Query: 99  LPPSLKSLRVQGCSKLESI-AETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIE 157
               ++ L +    ++E I       + +++ +++ +     + P    N+  L  + +E
Sbjct: 68  FR-QVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 125

Query: 158 GCGNLESFPEG---GLPCAKLKEVVIRWCGRLEALPKG-LHNLKSLQKLTIGKGGLEE-- 211
              +L S P G     P  KL  + +     LE +         SLQ L +    L    
Sbjct: 126 RN-DLSSLPRGIFHNTP--KLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVD 181

Query: 212 DGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPED------ 265
             L  +L   ++  N+                 ++ EL        +             
Sbjct: 182 LSLIPSLFHANVSYNLL---------STLAIPIAVEELDASHNS--INVVRGPVNVELTI 230

Query: 266 --------IRMGTTLPLPT---------SLTSLAIFSFPNLERL-------------SSS 295
                         L  P           L  +    F  ++RL             +  
Sbjct: 231 LKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY 290

Query: 296 IVDLQNLTSLYL 307
              +  L  L L
Sbjct: 291 GQPIPTLKVLDL 302

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 40.0 bits (94), Expect = 8e-04
 Identities = 28/159 (17%), Positives = 56/159 (35%), Gaps = 14/159 (8%)

Query: 72  ISSCRSLTSI-FSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETI 130
           ++   ++  +  S N ++     +        L  L++Q    L   A  L N   L  +
Sbjct: 201 LAIPIAVEELDASHNSIN----VVRGPVNV-ELTILKLQHN-NLTDTA-WLLNYPGLVEV 253

Query: 131 HIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEALP 190
            + Y E  KI+      +++L+ + I     L +    G P   LK + +     L  + 
Sbjct: 254 DLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVE 311

Query: 191 KGLHNLKSLQKLTIGK---GGLEEDGLPTNLHSLDIRGN 226
           +       L+ L +       L+       L +L +  N
Sbjct: 312 RNQPQFDRLENLYLDHNSIVTLKLSTHH-TLKNLTLSHN 349

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 42/271 (15%), Positives = 85/271 (31%), Gaps = 66/271 (24%)

Query: 27  LPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNE 86
           +  + + L++    N         IQ    +S +      LE L +S    + +I     
Sbjct: 62  ISTNTRLLNLH--EN--------QIQIIKVNSFKHLRH--LEILQLSRNH-IRTI----- 103

Query: 87  LSATLESLEVGNLPPSLKSLRVQGCSKLESI-AETLDNSTSLETIHIFYCENMKILPSGL 145
                  L       +L +L +    +L +I        + L+ + +       I     
Sbjct: 104 EIGAFNGL------ANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAF 156

Query: 146 HNLRQLQEISIEGCGNLESFPEG---GLP--------------------CAKLKEVVIRW 182
           + +  L+ + +     L    EG   GL                       KL E+ +  
Sbjct: 157 NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSG 216

Query: 183 CGRLEALPKG-LHNLKSLQKLTIGKGGLEE------DGLPTNLHSLDIRGNMEIWKSMIE 235
              L A+  G    L  LQKL + +  ++       D L  +L  +++  N     +++ 
Sbjct: 217 N-HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQ-SLVEINLAHNN---LTLLP 271

Query: 236 WGQGFHRFSSLRELRIEG----CDDDMVSFP 262
               F     L  + +      C+ D++   
Sbjct: 272 HDL-FTPLHHLERIHLHHNPWNCNCDILWLS 301

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 46/308 (14%), Positives = 84/308 (27%), Gaps = 63/308 (20%)

Query: 72  ISSCRSLTSI-FSKNELSA----TLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTS 126
            S+  +L  +  S N++ +     L  L    +P    SL +     +  I         
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVL--HQMPLLNLSLDLSLN-PMNFIQPGAFKEIR 201

Query: 127 LETIHIFYCEN-MKILPSGLHNLRQLQEIS-----IEGCGNLESFPEGGLP--------- 171
           L  + +    + + ++ + +  L  L+            GNLE F +  L          
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261

Query: 172 -------------------CAKLKEVVIRWCGRLEALPKG--LHNLKSLQKLTIGKGGLE 210
                                 +    +     +E +         + L+ +    G   
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV-TIERVKDFSYNFGWQHLELVNCKFGQFP 320

Query: 211 EDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGT 270
              L  +L  L    N                  SL  L +            +      
Sbjct: 321 TLKLK-SLKRLTFTSNK------GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQ------ 367

Query: 271 TLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPEKGL---PSSLLE 327
           +    TSL  L   SF  +  +SS+ + L+ L  L       LK   E  +     +L+ 
Sbjct: 368 SDFGTTSLKYL-DLSFNGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIY 425

Query: 328 LWIGGCPL 335
           L I     
Sbjct: 426 LDISHTHT 433

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 36/205 (17%), Positives = 74/205 (36%), Gaps = 25/205 (12%)

Query: 73  SSCRSLTSIF-SKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIH 131
               SL  +  S+N LS      +      SLK L +     + +++        LE + 
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLD 402

Query: 132 IFYCENMKILPSG-LHNLRQLQEISIEGCGNLESFPEG---GLPCAKLKEVVIRWCGRLE 187
             +    ++       +LR L  + I    +      G   GL    L+ + +      E
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLS--SLEVLKMAGNSFQE 459

Query: 188 ALPKG-LHNLKSLQKLTIGKGGLEE------DGLPTNLHSLDIRGNMEIWKSMIEWGQGF 240
                    L++L  L + +  LE+      + L ++L  L++  N ++    +  G  F
Sbjct: 460 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL-SSLQVLNMASN-QL--KSVPDGI-F 514

Query: 241 HRFSSLRELRIEG----CDDDMVSF 261
            R +SL+++ +      C    + +
Sbjct: 515 DRLTSLQKIWLHTNPWDCSCPRIDY 539

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 33/226 (14%), Positives = 61/226 (26%), Gaps = 52/226 (23%)

Query: 124 STSLETIHIFYCENMKILPSG-LHNLRQLQEISIEGCGNLESFPEG---GLPCAKLKEVV 179
             S +T+ +    +++ +PS    NL  +  I +     L+         L   K+  + 
Sbjct: 30  PPSTQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLS--KVTHIE 86

Query: 180 IRWCGRLEALPKG-LHNLKSLQKLTIGKGGLEE------DGLPTNLHSLDIRGNMEIWKS 232
           IR    L  +    L  L  L+ L I   GL+                L+I  N  +   
Sbjct: 87  IRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYM--- 143

Query: 233 MIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERL 292
                                            I +     L     +L +        +
Sbjct: 144 -------------------------------TSIPVNAFQGLCNETLTLKL-YNNGFTSV 171

Query: 293 SSSIVDLQNLTSLYLVGCPKLKYFPE---KGLPSSLLELWIGGCPL 335
                +   L ++YL     L    +    G+ S    L +    +
Sbjct: 172 QGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV 217

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 39.9 bits (94), Expect = 5e-04
 Identities = 22/136 (16%), Positives = 51/136 (37%), Gaps = 10/136 (7%)

Query: 72  ISSCRSLTSI-FSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETI 130
           I    ++  +  +    +     +    L  +L+ LR+ G          L   TSL  +
Sbjct: 62  IEYAHNIKDLTINNIHAT-NYNPIS--GLS-NLERLRIMGKDVTSDKIPNLSGLTSLTLL 117

Query: 131 HIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPE-GGLPCAKLKEVVIRWCGRLEAL 189
            I +  +   + + ++ L ++  I +   G +        LP  +LK + I++   +   
Sbjct: 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLP--ELKSLNIQFD-GVHDY 174

Query: 190 PKGLHNLKSLQKLTIG 205
            +G+ +   L +L   
Sbjct: 175 -RGIEDFPKLNQLYAF 189

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 41.1 bits (96), Expect = 5e-04
 Identities = 35/148 (23%), Positives = 55/148 (37%), Gaps = 26/148 (17%)

Query: 67  LEELCISSCRSLTSIFSKNELSATLESLEVGN-----LPPSLKSLRVQGCS--KLESIAE 119
           LE L     R L+++    EL A+L+ L+V N     LP     L        +L  + E
Sbjct: 102 LEYLDACDNR-LSTL---PELPASLKHLDVDNNQLTMLPELPALLEYINADNNQLTMLPE 157

Query: 120 TLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGN--LESFPEGGLPCAKLKE 177
                TSLE + +     +  LP    +L  L            LES P   +     +E
Sbjct: 158 LP---TSLEVLSVRNN-QLTFLPELPESLEALD------VSTNLLESLPAVPVRNHHSEE 207

Query: 178 VVIR-WCG--RLEALPKGLHNLKSLQKL 202
             I   C   R+  +P+ + +L     +
Sbjct: 208 TEIFFRCRENRITHIPENILSLDPTCTI 235

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 40.3 bits (94), Expect = 8e-04
 Identities = 28/159 (17%), Positives = 56/159 (35%), Gaps = 14/159 (8%)

Query: 72  ISSCRSLTSI-FSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETI 130
           ++   ++  +  S N ++     +        L  L++Q    L   A  L N   L  +
Sbjct: 207 LAIPIAVEELDASHNSIN----VVRGPVNV-ELTILKLQHN-NLTDTA-WLLNYPGLVEV 259

Query: 131 HIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEALP 190
            + Y E  KI+      +++L+ + I     L +    G P   LK + +     L  + 
Sbjct: 260 DLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVE 317

Query: 191 KGLHNLKSLQKLTIGK---GGLEEDGLPTNLHSLDIRGN 226
           +       L+ L +       L+       L +L +  N
Sbjct: 318 RNQPQFDRLENLYLDHNSIVTLKLSTHH-TLKNLTLSHN 355

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	355
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.93
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.92
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.92
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.92
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.92
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.92
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.91
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.91
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.91
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.91
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.9
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.9
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.9
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.9
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.9
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.9
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.89
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.89
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.89
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.89
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.88
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.88
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.88
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.88
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.88
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.88
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.88
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.88
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.88
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.88
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.88
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.87
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.87
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.87
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.87
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.87
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.87
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.86
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.86
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.86
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.86
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.86
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.86
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.86
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.85
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.84
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.84
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.84
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.84
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.84
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.83
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.83
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.82
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.81
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.81
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.81
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.8
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.8
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.79
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.79
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.78
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.78
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.78
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.78
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.77
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.74
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.74
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.74
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.73
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.73
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.72
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.72
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.71
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.7
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.7
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.69
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.69
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.68
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.68
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.68
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.67
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.66
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.65
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.65
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.64
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.63
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.62
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.62
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.6
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.6
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.57
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.57
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.56
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.55
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.52
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.52
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.52
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.51
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.5
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.49
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.48
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.46
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.46
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.44
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.41
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.39
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.36
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.35
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.34
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.33
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.33
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.31
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.31
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.3
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.29
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.29
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.28
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.27
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.25
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.23
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.23
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.18
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.16
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.16
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.14
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.12
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.08
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.06
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.01
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.99
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.98
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.92
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.92
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.9
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.88
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.85
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.74
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.73
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.66
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.64
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.63
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.62
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.51
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.33
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.31
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.31
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.3
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.27
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.21
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.19
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.16
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.1
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.1
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.06
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.04
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.87
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.63
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	94.8
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	94.27
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	91.08
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	87.15

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.93  E-value=1.5e-25  Score=223.95  Aligned_cols=324  Identities=19%  Similarity=0.109  Sum_probs=194.8

Q ss_pred             CCCCCccEEeecccccCc-ccccCcc--CCCcceEecccCccccccccccCc---CCCC-----------CCCccccccc
Q 018478            3 DTNSSLEILEIWSCRSLT-YLAAVQL--PRSLKRLDIQCCSNIRTLTMEEGI---QSSS-----------SSSSRRYTSY   65 (355)
Q Consensus         3 ~~~~~L~~L~l~~~~~l~-~l~~~~~--~~~L~~L~l~~~~~l~~~~~~~~~---~~~~-----------~~~~~~~~~~   65 (355)
                      .++++|++|+++++. ++ .++....  .++|++|+++++.-...++.....   +.+.           ..+..+..++
T Consensus       340 ~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~  418 (768)
T 3rgz_A          340 LKMRGLKVLDLSFNE-FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS  418 (768)
T ss_dssp             TTCTTCCEEECCSSE-EEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCT
T ss_pred             hcCCCCCEEeCcCCc-cCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCC
Confidence            457889999998763 33 3332211  137888888875422233332210   0000           0122334455


Q ss_pred             cccEEEecCCCccchhccccccchhccccccCCCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccc
Q 018478           66 LLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGL  145 (355)
Q Consensus        66 ~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~  145 (355)
                      +|+.|+++++          .+.+..+  .....+++|+.|++++|.....+|..+..+++|++|++++|.....+|..+
T Consensus       419 ~L~~L~Ls~N----------~l~~~~p--~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l  486 (768)
T 3rgz_A          419 ELVSLHLSFN----------YLSGTIP--SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL  486 (768)
T ss_dssp             TCCEEECCSS----------EEESCCC--GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred             CCCEEECcCC----------cccCccc--HHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHH
Confidence            5555555443          2222221  111334677777777777444567777777777777777777555667777


Q ss_pred             cCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEccccCcCcccccccCCCCCceEEEeec----CcCC----------
Q 018478          146 HNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKG----GLEE----------  211 (355)
Q Consensus       146 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~----~i~~----------  211 (355)
                      ..+++|+.|++++|.....+|..+..+++|+.|++++|.....+|..+..+++|+.|+++.+    .+|.          
T Consensus       487 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~  566 (768)
T 3rgz_A          487 SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIA  566 (768)
T ss_dssp             GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBC
T ss_pred             hcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhh
Confidence            77777777777777544466777777777778877777655567777777777777777611    1211          


Q ss_pred             -------------------------------------------------------------CCCCCCccEEEecCCcchh
Q 018478          212 -------------------------------------------------------------DGLPTNLHSLDIRGNMEIW  230 (355)
Q Consensus       212 -------------------------------------------------------------~~~~~~L~~L~l~~~~~~~  230 (355)
                                                                                   ....++|+.|++++|....
T Consensus       567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g  646 (768)
T 3rgz_A          567 ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG  646 (768)
T ss_dssp             CSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBS
T ss_pred             hhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccc
Confidence                                                                         1123567788888877554


Q ss_pred             hhhhhhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcc-cccccCCCCCCccEEeeCC
Q 018478          231 KSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLE-RLSSSIVDLQNLTSLYLVG  309 (355)
Q Consensus       231 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~l~~~~~~~~~L~~L~l~~  309 (355)
                      .++..    ++.+++|+.|++++ +.-...+|..+       ..+++|++|+++++ .++ .+|..+..+++|++|++++
T Consensus       647 ~ip~~----l~~l~~L~~L~Ls~-N~l~g~ip~~l-------~~L~~L~~LdLs~N-~l~g~ip~~l~~l~~L~~L~ls~  713 (768)
T 3rgz_A          647 YIPKE----IGSMPYLFILNLGH-NDISGSIPDEV-------GDLRGLNILDLSSN-KLDGRIPQAMSALTMLTEIDLSN  713 (768)
T ss_dssp             CCCGG----GGGCTTCCEEECCS-SCCCSCCCGGG-------GGCTTCCEEECCSS-CCEECCCGGGGGCCCCSEEECCS
T ss_pred             cCCHH----HhccccCCEEeCcC-CccCCCCChHH-------hCCCCCCEEECCCC-cccCcCChHHhCCCCCCEEECcC
Confidence            44432    66788888888887 43344777766       56778888888884 444 7777778888888888888


Q ss_pred             CCCCc-ccCCCCCCCCccEEEecCCchhh----HhhhccCCcccccccc
Q 018478          310 CPKLK-YFPEKGLPSSLLELWIGGCPLIE----EKCRKDGGQYFYSLFY  353 (355)
Q Consensus       310 ~~~l~-~~~~~~~~~~L~~L~l~~c~~l~----~~~~~~~~~~~~~i~~  353 (355)
                      | +++ .+|..+.+.++....+.+++.+.    ..|....+++|+||+|
T Consensus       714 N-~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~  761 (768)
T 3rgz_A          714 N-NLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQR  761 (768)
T ss_dssp             S-EEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC---------
T ss_pred             C-cccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCC
Confidence            8 444 45655555555555566665432    2688999999999987

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.92  E-value=4.1e-24  Score=193.95  Aligned_cols=188  Identities=18%  Similarity=0.212  Sum_probs=103.0

Q ss_pred             CCCCccEEeecccccCcccccCccCCCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhcc
Q 018478            4 TNSSLEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFS   83 (355)
Q Consensus         4 ~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~   83 (355)
                      .+++|++|++.++ .++.++.....++|++|++++| .+..++..             ..+++|++|+++++ .++.+  
T Consensus        42 ~l~~L~~L~l~~~-~i~~~~~~~~~~~L~~L~l~~n-~i~~~~~~-------------~~l~~L~~L~L~~n-~i~~~--  103 (347)
T 4fmz_A           42 ELESITKLVVAGE-KVASIQGIEYLTNLEYLNLNGN-QITDISPL-------------SNLVKLTNLYIGTN-KITDI--  103 (347)
T ss_dssp             HHTTCSEEECCSS-CCCCCTTGGGCTTCCEEECCSS-CCCCCGGG-------------TTCTTCCEEECCSS-CCCCC--
T ss_pred             hcccccEEEEeCC-ccccchhhhhcCCccEEEccCC-ccccchhh-------------hcCCcCCEEEccCC-cccCc--
Confidence            4678888888864 5666654444588888888885 46665542             23667777777765 34444  


Q ss_pred             ccccchhccccccCCCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCc
Q 018478           84 KNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLE  163 (355)
Q Consensus        84 ~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~  163 (355)
                                 +....+++|++|++++|. +..++. +..+++|++|++++|.....++. +..+++|+.|++++| .+.
T Consensus       104 -----------~~~~~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~-~~~  168 (347)
T 4fmz_A          104 -----------SALQNLTNLRELYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTES-KVK  168 (347)
T ss_dssp             -----------GGGTTCTTCSEEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSS-CCC
T ss_pred             -----------hHHcCCCcCCEEECcCCc-ccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCC-CcC
Confidence                       333444566666666655 444444 55566666666666654444332 555666666666655 333


Q ss_pred             CCCCCCCCCCCcceEEEccccCcCcccccccCCCCCceEEEeecCcCC---CCCCCCccEEEecCCc
Q 018478          164 SFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEE---DGLPTNLHSLDIRGNM  227 (355)
Q Consensus       164 ~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~---~~~~~~L~~L~l~~~~  227 (355)
                      .++. +..+++|+.|++++|. ++.++. +..+++|+.|+++.+.+..   ...+++|+.|++++|.
T Consensus       169 ~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~  232 (347)
T 4fmz_A          169 DVTP-IANLTDLYSLSLNYNQ-IEDISP-LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNK  232 (347)
T ss_dssp             CCGG-GGGCTTCSEEECTTSC-CCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             Cchh-hccCCCCCEEEccCCc-cccccc-ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCc
Confidence            3332 4445556666665542 333332 4455555555554222221   2233455555555543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.92  E-value=1.6e-23  Score=197.08  Aligned_cols=291  Identities=17%  Similarity=0.145  Sum_probs=183.7

Q ss_pred             CCccEEeecccccCcccccCccC--CCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhcc
Q 018478            6 SSLEILEIWSCRSLTYLAAVQLP--RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFS   83 (355)
Q Consensus         6 ~~L~~L~l~~~~~l~~l~~~~~~--~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~   83 (355)
                      ++|++|+++++ .++.+++..+.  ++|++|+++++.....++...           +..+++|++|+++++.. +.+  
T Consensus        30 ~~l~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~-----------~~~l~~L~~L~Ls~n~l-~~~--   94 (455)
T 3v47_A           30 AHVNYVDLSLN-SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNT-----------FRGLSSLIILKLDYNQF-LQL--   94 (455)
T ss_dssp             TTCCEEECCSS-CCCEECTTTTSSCTTCCEEECCCCSTTCEECTTT-----------TTTCTTCCEEECTTCTT-CEE--
T ss_pred             CccCEEEecCC-ccCcCChhHhccCccccEEECcCCcccceECccc-----------ccccccCCEEeCCCCcc-Ccc--
Confidence            45777777754 45555444443  677777777754222333322           45577777777776532 222  


Q ss_pred             ccccchhccccccCCCCCcccEEEEccCcchhchhhh--ccCCCCCcEEEeeccCCcCccccc-ccCCCCCceEeccccC
Q 018478           84 KNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAET--LDNSTSLETIHIFYCENMKILPSG-LHNLRQLQEISIEGCG  160 (355)
Q Consensus        84 ~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~  160 (355)
                             .+  .....+++|++|++++|.....++..  +..+++|++|++++|......|.. +..+++|+.|++++|.
T Consensus        95 -------~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~  165 (455)
T 3v47_A           95 -------ET--GAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK  165 (455)
T ss_dssp             -------CT--TTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC
T ss_pred             -------Ch--hhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc
Confidence                   00  11234467778888777622233433  667777888887777733333443 6677777777777763


Q ss_pred             CCcCCCCCCC----------------------------------CCCCcceEEEccccCcCccccccc------------
Q 018478          161 NLESFPEGGL----------------------------------PCAKLKEVVIRWCGRLEALPKGLH------------  194 (355)
Q Consensus       161 ~l~~~~~~~~----------------------------------~~~~L~~L~l~~~~~~~~~p~~l~------------  194 (355)
                      .....+..+.                                  .+++|+.|++++|......|..+.            
T Consensus       166 l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~  245 (455)
T 3v47_A          166 VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI  245 (455)
T ss_dssp             BSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEE
T ss_pred             ccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEe
Confidence            2222222222                                  235778888877643332222221            


Q ss_pred             ---------------------------CCCCCceEEEeecCcCC-----CCCCCCccEEEecCCcchhhhhhhhcccCCC
Q 018478          195 ---------------------------NLKSLQKLTIGKGGLEE-----DGLPTNLHSLDIRGNMEIWKSMIEWGQGFHR  242 (355)
Q Consensus       195 ---------------------------~~~~L~~L~l~~~~i~~-----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  242 (355)
                                                 ..++|++|+++.+.+..     ...+++|+.|++++|......+.  .  +..
T Consensus       246 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~--~~~  321 (455)
T 3v47_A          246 LSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDN--A--FWG  321 (455)
T ss_dssp             CTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT--T--TTT
T ss_pred             eccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChh--H--hcC
Confidence                                       12467777777333321     34568899999998875432222  1  778


Q ss_pred             CCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccc-cccCCCCCCccEEeeCCCCCCcccCCCCC
Q 018478          243 FSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERL-SSSIVDLQNLTSLYLVGCPKLKYFPEKGL  321 (355)
Q Consensus       243 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~  321 (355)
                      +++|++|++++  +.+..++...+      ..+++|++|++++ +.++.+ |..+..+++|++|++++| +++.++...+
T Consensus       322 l~~L~~L~Ls~--N~l~~~~~~~~------~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~  391 (455)
T 3v47_A          322 LTHLLKLNLSQ--NFLGSIDSRMF------ENLDKLEVLDLSY-NHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIF  391 (455)
T ss_dssp             CTTCCEEECCS--SCCCEECGGGG------TTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTT
T ss_pred             cccCCEEECCC--CccCCcChhHh------cCcccCCEEECCC-CcccccChhhccccccccEEECCCC-ccccCCHhHh
Confidence            89999999998  46666654332      5678999999999 466666 667889999999999998 8999887544


Q ss_pred             --CCCccEEEecCCc
Q 018478          322 --PSSLLELWIGGCP  334 (355)
Q Consensus       322 --~~~L~~L~l~~c~  334 (355)
                        +++|++|++++++
T Consensus       392 ~~l~~L~~L~l~~N~  406 (455)
T 3v47_A          392 DRLTSLQKIWLHTNP  406 (455)
T ss_dssp             TTCTTCCEEECCSSC
T ss_pred             ccCCcccEEEccCCC
Confidence              7899999998765

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.92  E-value=2.9e-24  Score=214.60  Aligned_cols=316  Identities=16%  Similarity=0.121  Sum_probs=191.0

Q ss_pred             CCCccEEeecccccCcccccCccC--CCcceEecccCcccc-cccccc--CcCCCC-----------CCCccccccc-cc
Q 018478            5 NSSLEILEIWSCRSLTYLAAVQLP--RSLKRLDIQCCSNIR-TLTMEE--GIQSSS-----------SSSSRRYTSY-LL   67 (355)
Q Consensus         5 ~~~L~~L~l~~~~~l~~l~~~~~~--~~L~~L~l~~~~~l~-~~~~~~--~~~~~~-----------~~~~~~~~~~-~L   67 (355)
                      +++|++|+++++. ++...+..+.  ++|++|+++++. +. .+|...  +++++.           ..+..+..++ +|
T Consensus       293 ~~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~n~-l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L  370 (768)
T 3rgz_A          293 CDTLTGLDLSGNH-FYGAVPPFFGSCSLLESLALSSNN-FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASL  370 (768)
T ss_dssp             CTTCSEEECCSSE-EEECCCGGGGGCTTCCEEECCSSE-EEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTC
T ss_pred             cCcCCEEECcCCc-CCCccchHHhcCCCccEEECCCCc-ccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCC
Confidence            4788888888653 3322222232  778888888754 43 555431  111111           1122333343 55


Q ss_pred             cEEEecCCC---------------ccchh-ccccccchhccccccCCCCCcccEEEEccCcchhchhhhccCCCCCcEEE
Q 018478           68 EELCISSCR---------------SLTSI-FSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIH  131 (355)
Q Consensus        68 ~~L~l~~~~---------------~l~~~-~~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  131 (355)
                      +.|+++++.               .++.+ +.+|.+.+..+  .....+++|+.|++++|.....+|..++.+++|++|+
T Consensus       371 ~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  448 (768)
T 3rgz_A          371 LTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP--PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK  448 (768)
T ss_dssp             SEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECC--GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred             cEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccC--HHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEE
Confidence            666555432               12222 44444443332  1123345677777777663335566666677777777


Q ss_pred             eeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEccccCcCcccccccCCCCCceEEEeecCc--
Q 018478          132 IFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGL--  209 (355)
Q Consensus       132 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i--  209 (355)
                      +++|.....+|..+..+++|+.|++++|.....+|..+..+++|+.|++++|.....+|..++.+++|++|+++.+.+  
T Consensus       449 L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~  528 (768)
T 3rgz_A          449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG  528 (768)
T ss_dssp             CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred             CCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccC
Confidence            777765556666777777777777777644445666667777777777777665556777777777788877773332  


Q ss_pred             --C-CCCCCCCccEEEecCCcchhhhhhhhc-------------------------------------------------
Q 018478          210 --E-EDGLPTNLHSLDIRGNMEIWKSMIEWG-------------------------------------------------  237 (355)
Q Consensus       210 --~-~~~~~~~L~~L~l~~~~~~~~~~~~~~-------------------------------------------------  237 (355)
                        | ..+.+++|+.|++++|.....++..+.                                                 
T Consensus       529 ~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  608 (768)
T 3rgz_A          529 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS  608 (768)
T ss_dssp             ECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGG
T ss_pred             cCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccc
Confidence              2 234567788888877764422222110                                                 


Q ss_pred             -----------------ccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcc-cccccCCCC
Q 018478          238 -----------------QGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLE-RLSSSIVDL  299 (355)
Q Consensus       238 -----------------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~l~~~~~~~  299 (355)
                                       ..+..+++|+.|++++ +.-...+|.++       ..++.|+.|+++++ .++ .+|..+..+
T Consensus       609 ~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~-N~l~g~ip~~l-------~~l~~L~~L~Ls~N-~l~g~ip~~l~~L  679 (768)
T 3rgz_A          609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY-NMLSGYIPKEI-------GSMPYLFILNLGHN-DISGSIPDEVGDL  679 (768)
T ss_dssp             GTCCSCTTSCEEEEECCCSCSSSBCCCEEECCS-SCCBSCCCGGG-------GGCTTCCEEECCSS-CCCSCCCGGGGGC
T ss_pred             cccccccccceecccCchhhhccccccEEECcC-CcccccCCHHH-------hccccCCEEeCcCC-ccCCCCChHHhCC
Confidence                             0133456777888887 43344667666       46778888888884 454 778888888


Q ss_pred             CCccEEeeCCCCCCcccCCCCC--CCCccEEEecCCc
Q 018478          300 QNLTSLYLVGCPKLKYFPEKGL--PSSLLELWIGGCP  334 (355)
Q Consensus       300 ~~L~~L~l~~~~~l~~~~~~~~--~~~L~~L~l~~c~  334 (355)
                      ++|+.|++++| +++...+..+  +++|++|++++|+
T Consensus       680 ~~L~~LdLs~N-~l~g~ip~~l~~l~~L~~L~ls~N~  715 (768)
T 3rgz_A          680 RGLNILDLSSN-KLDGRIPQAMSALTMLTEIDLSNNN  715 (768)
T ss_dssp             TTCCEEECCSS-CCEECCCGGGGGCCCCSEEECCSSE
T ss_pred             CCCCEEECCCC-cccCcCChHHhCCCCCCEEECcCCc
Confidence            88888888888 6664333223  6888999988875

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.92  E-value=1.3e-23  Score=198.88  Aligned_cols=220  Identities=17%  Similarity=0.149  Sum_probs=141.1

Q ss_pred             CCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCC-CCCCCCCcceE
Q 018478          100 PPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPE-GGLPCAKLKEV  178 (355)
Q Consensus       100 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L  178 (355)
                      +++|+.|++++|......+..+..+++|++|++++|......+..+..+++|+.|++++| .++.++. .+..+++|+.|
T Consensus       103 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L  181 (477)
T 2id5_A          103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVL  181 (477)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTTCTTCCEE
T ss_pred             CCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHhcccCCCcEE
Confidence            456666666666522223445566666666666666533333445666666666666665 4444442 34456666666


Q ss_pred             EEccccCcCcccccccCCCCCceEEEeec----CcCC-CCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecc
Q 018478          179 VIRWCGRLEALPKGLHNLKSLQKLTIGKG----GLEE-DGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEG  253 (355)
Q Consensus       179 ~l~~~~~~~~~p~~l~~~~~L~~L~l~~~----~i~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  253 (355)
                      ++++|......+..+..+++|+.|+++..    .++. .....+|+.|++++|... ..+...   +..+++|++|++++
T Consensus       182 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~---~~~l~~L~~L~Ls~  257 (477)
T 2id5_A          182 RLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLA---VRHLVYLRFLNLSY  257 (477)
T ss_dssp             EEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHHH---HTTCTTCCEEECCS
T ss_pred             eCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccCHHH---hcCccccCeeECCC
Confidence            66665433333345666677777777621    1221 122347888888877633 333222   67888999999998


Q ss_pred             cCCcccccCccccccCCCCCCCCccceEEeccCCCcccc-cccCCCCCCccEEeeCCCCCCcccCCCCC--CCCccEEEe
Q 018478          254 CDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERL-SSSIVDLQNLTSLYLVGCPKLKYFPEKGL--PSSLLELWI  330 (355)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~--~~~L~~L~l  330 (355)
                        +.+..++...+      ..+++|++|++++ +.++.+ +..+..+++|++|++++| +++.++...+  +++|++|++
T Consensus       258 --n~l~~~~~~~~------~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l  327 (477)
T 2id5_A          258 --NPISTIEGSML------HELLRLQEIQLVG-GQLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLIL  327 (477)
T ss_dssp             --SCCCEECTTSC------TTCTTCCEEECCS-SCCSEECTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEEC
T ss_pred             --CcCCccChhhc------cccccCCEEECCC-CccceECHHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEc
Confidence              55666665432      5678899999998 466655 567788999999999998 8998887543  689999999


Q ss_pred             cCCc
Q 018478          331 GGCP  334 (355)
Q Consensus       331 ~~c~  334 (355)
                      .+++
T Consensus       328 ~~N~  331 (477)
T 2id5_A          328 DSNP  331 (477)
T ss_dssp             CSSC
T ss_pred             cCCC
Confidence            9876

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.92  E-value=1.7e-23  Score=209.20  Aligned_cols=300  Identities=16%  Similarity=0.212  Sum_probs=181.5

Q ss_pred             CCCCCccEEeecccccCcc------------------cccCcc---CCCcceEecccCccccccccccCcCCCCCCCccc
Q 018478            3 DTNSSLEILEIWSCRSLTY------------------LAAVQL---PRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRR   61 (355)
Q Consensus         3 ~~~~~L~~L~l~~~~~l~~------------------l~~~~~---~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~   61 (355)
                      +++++|++|+++++ .++.                  +|....   .++|++|++++|.....+|..            +
T Consensus       445 ~~L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~------------l  511 (876)
T 4ecn_A          445 QRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF------------L  511 (876)
T ss_dssp             GGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG------------G
T ss_pred             hcCCCCCEEECcCC-cCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH------------H
Confidence            35678888888764 4555                  554332   277888888876555555643            2


Q ss_pred             cccccccEEEecCCC----------------------ccchh-ccccccchhccccccCCCCCcccEEEEccCcchhchh
Q 018478           62 YTSYLLEELCISSCR----------------------SLTSI-FSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIA  118 (355)
Q Consensus        62 ~~~~~L~~L~l~~~~----------------------~l~~~-~~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  118 (355)
                      ..+++|+.|+++++.                      .++.+ +++|.+. .++.......+++|+.|++++|. +..+|
T Consensus       512 ~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp  589 (876)
T 4ecn_A          512 YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNK-VRHLE  589 (876)
T ss_dssp             GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSC-CCBCC
T ss_pred             hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCC-cccch
Confidence            446666666666553                      12222 3344444 22100012334566666666655 44555


Q ss_pred             hhccCCCCCcEEEeeccCCcCcccccccCCCC-CceEeccccCCCcCCCCCCCCC-------------------------
Q 018478          119 ETLDNSTSLETIHIFYCENMKILPSGLHNLRQ-LQEISIEGCGNLESFPEGGLPC-------------------------  172 (355)
Q Consensus       119 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~l~~~~~~~~~~-------------------------  172 (355)
                       .++.+++|+.|++++|. +..+|..+..+++ |+.|++++| .+..+|..+..+                         
T Consensus       590 -~~~~L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N-~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~  666 (876)
T 4ecn_A          590 -AFGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHN-KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS  666 (876)
T ss_dssp             -CCCTTSEESEEECCSSC-CSCCCTTSCEECTTCCEEECCSS-CCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSC
T ss_pred             -hhcCCCcceEEECcCCc-cccchHHHhhccccCCEEECcCC-CCCcCchhhhccccCCCCEEECcCCcCCCccccchhh
Confidence             55556666666666655 3355555555555 666666655 344444433222                         


Q ss_pred             ------CCcceEEEccccCcCcccccc-cCCCCCceEEEeecCc---CCCCC--C-------CCccEEEecCCcchhhhh
Q 018478          173 ------AKLKEVVIRWCGRLEALPKGL-HNLKSLQKLTIGKGGL---EEDGL--P-------TNLHSLDIRGNMEIWKSM  233 (355)
Q Consensus       173 ------~~L~~L~l~~~~~~~~~p~~l-~~~~~L~~L~l~~~~i---~~~~~--~-------~~L~~L~l~~~~~~~~~~  233 (355)
                            ++|+.|++++|. ++.+|..+ ..+++|+.|+++.+.+   +....  .       ++|+.|++++|... .++
T Consensus       667 l~~~~~~~L~~L~Ls~N~-L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp  744 (876)
T 4ecn_A          667 MDDYKGINASTVTLSYNE-IQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLS  744 (876)
T ss_dssp             TTTCCCCCEEEEECCSSC-CCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCC
T ss_pred             hccccCCCcCEEEccCCc-CCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cch
Confidence                  245555555532 33444433 3667777777773333   32111  1       27888888888644 444


Q ss_pred             hhhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEecc------CCCcccccccCCCCCCccEEee
Q 018478          234 IEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFS------FPNLERLSSSIVDLQNLTSLYL  307 (355)
Q Consensus       234 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~l~~l~~~~~~~~~L~~L~l  307 (355)
                      ..+.  ...+++|+.|++++  +.+..+|..+       ..+++|+.|++++      +.-...+|..+..+++|++|++
T Consensus       745 ~~l~--~~~l~~L~~L~Ls~--N~L~~lp~~l-------~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~L  813 (876)
T 4ecn_A          745 DDFR--ATTLPYLSNMDVSY--NCFSSFPTQP-------LNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQI  813 (876)
T ss_dssp             GGGS--TTTCTTCCEEECCS--SCCSSCCCGG-------GGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEEC
T ss_pred             HHhh--hccCCCcCEEEeCC--CCCCccchhh-------hcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEEC
Confidence            3221  13788999999988  5666677766       4678899999976      3334577888888999999999


Q ss_pred             CCCCCCcccCCCCCCCCccEEEecCCch
Q 018478          308 VGCPKLKYFPEKGLPSSLLELWIGGCPL  335 (355)
Q Consensus       308 ~~~~~l~~~~~~~~~~~L~~L~l~~c~~  335 (355)
                      ++| ++..+|.. +.++|++|++++|+.
T Consensus       814 s~N-~L~~Ip~~-l~~~L~~LdLs~N~l  839 (876)
T 4ecn_A          814 GSN-DIRKVDEK-LTPQLYILDIADNPN  839 (876)
T ss_dssp             CSS-CCCBCCSC-CCSSSCEEECCSCTT
T ss_pred             CCC-CCCccCHh-hcCCCCEEECCCCCC
Confidence            998 68888875 558999999999974

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.91  E-value=1.8e-23  Score=189.77  Aligned_cols=278  Identities=18%  Similarity=0.153  Sum_probs=214.8

Q ss_pred             CCCCCccEEeecccccCcccccCccCCCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhc
Q 018478            3 DTNSSLEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIF   82 (355)
Q Consensus         3 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~   82 (355)
                      +.+++|++|++++| .++.++...-.++|++|+++++ .+..++.             +..+++|++|+++++ .++.+ 
T Consensus        63 ~~~~~L~~L~l~~n-~i~~~~~~~~l~~L~~L~L~~n-~i~~~~~-------------~~~l~~L~~L~l~~n-~i~~~-  125 (347)
T 4fmz_A           63 EYLTNLEYLNLNGN-QITDISPLSNLVKLTNLYIGTN-KITDISA-------------LQNLTNLRELYLNED-NISDI-  125 (347)
T ss_dssp             GGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCCCGG-------------GTTCTTCSEEECTTS-CCCCC-
T ss_pred             hhcCCccEEEccCC-ccccchhhhcCCcCCEEEccCC-cccCchH-------------HcCCCcCCEEECcCC-cccCc-
Confidence            45789999999976 6777765334499999999995 5776653             345899999999986 45555 


Q ss_pred             cccccchhccccccCCCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCC
Q 018478           83 SKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNL  162 (355)
Q Consensus        83 ~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l  162 (355)
                                  +....+++|+.|++++|.....++. +..+++|++|++++|. +..++. +..+++|+.|++++| .+
T Consensus       126 ------------~~~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~-~~~~~~-~~~l~~L~~L~l~~n-~l  189 (347)
T 4fmz_A          126 ------------SPLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESK-VKDVTP-IANLTDLYSLSLNYN-QI  189 (347)
T ss_dssp             ------------GGGTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECTTS-CC
T ss_pred             ------------hhhccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCC-cCCchh-hccCCCCCEEEccCC-cc
Confidence                        4455668999999999975665554 7889999999999987 555544 788999999999997 56


Q ss_pred             cCCCCCCCCCCCcceEEEccccCcCcccccccCCCCCceEEEeecCc---CCCCCCCCccEEEecCCcchhhhhhhhccc
Q 018478          163 ESFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGL---EEDGLPTNLHSLDIRGNMEIWKSMIEWGQG  239 (355)
Q Consensus       163 ~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  239 (355)
                      ..++. +..+++|+.+++++|. +...+. +..+++|++|+++.+.+   +....+++|+.|++++|.... ...     
T Consensus       190 ~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~-~~~-----  260 (347)
T 4fmz_A          190 EDISP-LASLTSLHYFTAYVNQ-ITDITP-VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISD-INA-----  260 (347)
T ss_dssp             CCCGG-GGGCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-CGG-----
T ss_pred             ccccc-ccCCCccceeecccCC-CCCCch-hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCC-Chh-----
Confidence            66654 6678999999999964 444443 88899999999994443   335567899999999986443 322     


Q ss_pred             CCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcc-cccccCCCCCCccEEeeCCCCCCcccCC
Q 018478          240 FHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLE-RLSSSIVDLQNLTSLYLVGCPKLKYFPE  318 (355)
Q Consensus       240 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~l~~~~~~~~~L~~L~l~~~~~l~~~~~  318 (355)
                      +..+++|++|++++  +.+..++. +       ..+++|++|++++| .++ ..+..+..+++|++|++++| +++.++.
T Consensus       261 ~~~l~~L~~L~l~~--n~l~~~~~-~-------~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~  328 (347)
T 4fmz_A          261 VKDLTKLKMLNVGS--NQISDISV-L-------NNLSQLNSLFLNNN-QLGNEDMEVIGGLTNLTTLFLSQN-HITDIRP  328 (347)
T ss_dssp             GTTCTTCCEEECCS--SCCCCCGG-G-------GGCTTCSEEECCSS-CCCGGGHHHHHTCTTCSEEECCSS-SCCCCGG
T ss_pred             HhcCCCcCEEEccC--CccCCChh-h-------cCCCCCCEEECcCC-cCCCcChhHhhccccCCEEEccCC-ccccccC
Confidence            77899999999998  46666643 3       46789999999996 454 44556788999999999999 6888766


Q ss_pred             CCCCCCccEEEecCCc
Q 018478          319 KGLPSSLLELWIGGCP  334 (355)
Q Consensus       319 ~~~~~~L~~L~l~~c~  334 (355)
                      ...+++|++|++.+|+
T Consensus       329 ~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          329 LASLSKMDSADFANQV  344 (347)
T ss_dssp             GGGCTTCSEESSSCC-
T ss_pred             hhhhhccceeehhhhc
Confidence            4457999999999886

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.91  E-value=1.1e-23  Score=206.16  Aligned_cols=218  Identities=17%  Similarity=0.145  Sum_probs=135.6

Q ss_pred             CcccEEEEccCcchhchhhhccCCCC-CcEEEeeccCCcCcccccccCCC--CCceEeccccCCCcCCCCCCC-------
Q 018478          101 PSLKSLRVQGCSKLESIAETLDNSTS-LETIHIFYCENMKILPSGLHNLR--QLQEISIEGCGNLESFPEGGL-------  170 (355)
Q Consensus       101 ~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~l~--~L~~L~l~~~~~l~~~~~~~~-------  170 (355)
                      ++|+.|++++|. +..+|..+..+++ |++|++++|. +..+|..+..+.  +|+.|++++|......|..+.       
T Consensus       353 ~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~  430 (636)
T 4eco_A          353 IKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPF  430 (636)
T ss_dssp             EEESEEECCSSE-EEECCTTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCC
T ss_pred             CCCCEEECCCCc-cccccHhhhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccc
Confidence            344555554444 3344444555555 5555555555 335554444332  555666655533333344444       


Q ss_pred             CCCCcceEEEccccCcCcccccc-cCCCCCceEEEeecCcC---CCCC--C-------CCccEEEecCCcchhhhhhhhc
Q 018478          171 PCAKLKEVVIRWCGRLEALPKGL-HNLKSLQKLTIGKGGLE---EDGL--P-------TNLHSLDIRGNMEIWKSMIEWG  237 (355)
Q Consensus       171 ~~~~L~~L~l~~~~~~~~~p~~l-~~~~~L~~L~l~~~~i~---~~~~--~-------~~L~~L~l~~~~~~~~~~~~~~  237 (355)
                      .+++|+.|++++|. ++.+|..+ ..+++|++|+++.+.+.   ....  .       ++|+.|++++|... .++..+.
T Consensus       431 ~~~~L~~L~Ls~N~-l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~  508 (636)
T 4eco_A          431 KGINVSSINLSNNQ-ISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFR  508 (636)
T ss_dssp             CCCCEEEEECCSSC-CCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGS
T ss_pred             cCCCCCEEECcCCc-cCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhh
Confidence            44566666666643 34555433 45677777777733333   2111  1       17888888887644 4443221


Q ss_pred             ccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEecc------CCCcccccccCCCCCCccEEeeCCCC
Q 018478          238 QGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFS------FPNLERLSSSIVDLQNLTSLYLVGCP  311 (355)
Q Consensus       238 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~l~~l~~~~~~~~~L~~L~l~~~~  311 (355)
                        ...+++|++|++++  +.+..+|...       ..+++|++|++++      +.....+|..+..+++|++|++++| 
T Consensus       509 --~~~l~~L~~L~Ls~--N~l~~ip~~~-------~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-  576 (636)
T 4eco_A          509 --ATTLPYLVGIDLSY--NSFSKFPTQP-------LNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN-  576 (636)
T ss_dssp             --TTTCTTCCEEECCS--SCCSSCCCGG-------GGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-
T ss_pred             --hccCCCcCEEECCC--CCCCCcChhh-------hcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC-
Confidence              14788999999988  5666687766       4678999999954      3335577888888999999999998 


Q ss_pred             CCcccCCCCCCCCccEEEecCCch
Q 018478          312 KLKYFPEKGLPSSLLELWIGGCPL  335 (355)
Q Consensus       312 ~l~~~~~~~~~~~L~~L~l~~c~~  335 (355)
                      +++.+|.. +.++|++|++++|+.
T Consensus       577 ~l~~ip~~-~~~~L~~L~Ls~N~l  599 (636)
T 4eco_A          577 DIRKVNEK-ITPNISVLDIKDNPN  599 (636)
T ss_dssp             CCCBCCSC-CCTTCCEEECCSCTT
T ss_pred             cCCccCHh-HhCcCCEEECcCCCC
Confidence            68888865 558999999999963

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.91  E-value=1.2e-23  Score=205.81  Aligned_cols=297  Identities=14%  Similarity=0.190  Sum_probs=207.0

Q ss_pred             CCCCccEEeecccccCcccccCcc-CCCcceEecccCcccc--ccccccCcCCCCCCCccccccccccEEEecCCCccch
Q 018478            4 TNSSLEILEIWSCRSLTYLAAVQL-PRSLKRLDIQCCSNIR--TLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTS   80 (355)
Q Consensus         4 ~~~~L~~L~l~~~~~l~~l~~~~~-~~~L~~L~l~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~   80 (355)
                      ++++|++|++++|.....+|..-. .++|++|+++++..+.  .+|..++--      ..+..+++|++|+++++ .++.
T Consensus       247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L------~~~~~l~~L~~L~L~~n-~l~~  319 (636)
T 4eco_A          247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQAL------ADAPVGEKIQIIYIGYN-NLKT  319 (636)
T ss_dssp             GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHH------HHSGGGGTCCEEECCSS-CCSS
T ss_pred             ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhh------hccccCCCCCEEECCCC-cCCc
Confidence            789999999998865555553222 2899999999965355  466543100      00112478899998876 3445


Q ss_pred             hccccccchhcccccc---CCCCCcccEEEEccCcchh-chhhhccCCCCCcEEEeeccCCcCcccccccCCCC-CceEe
Q 018478           81 IFSKNELSATLESLEV---GNLPPSLKSLRVQGCSKLE-SIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQ-LQEIS  155 (355)
Q Consensus        81 ~~~~n~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~  155 (355)
                      +             |.   ...+++|+.|++++|. +. .+| .++.+++|++|++++|. +..+|..+..+++ |+.|+
T Consensus       320 i-------------p~~~~l~~l~~L~~L~L~~N~-l~g~ip-~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~  383 (636)
T 4eco_A          320 F-------------PVETSLQKMKKLGMLECLYNQ-LEGKLP-AFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLS  383 (636)
T ss_dssp             C-------------CCHHHHTTCTTCCEEECCSCC-CEEECC-CCEEEEEESEEECCSSE-EEECCTTSEEECTTCCEEE
T ss_pred             c-------------CchhhhccCCCCCEEeCcCCc-Cccchh-hhCCCCCCCEEECCCCc-cccccHhhhhhcccCcEEE
Confidence            5             54   3556789999998887 55 777 77788899999998887 6678888888888 99999


Q ss_pred             ccccCCCcCCCCCCCCCC--CcceEEEccccCcCccccccc-------CCCCCceEEEeecCcCCCC-----CCCCccEE
Q 018478          156 IEGCGNLESFPEGGLPCA--KLKEVVIRWCGRLEALPKGLH-------NLKSLQKLTIGKGGLEEDG-----LPTNLHSL  221 (355)
Q Consensus       156 l~~~~~l~~~~~~~~~~~--~L~~L~l~~~~~~~~~p~~l~-------~~~~L~~L~l~~~~i~~~~-----~~~~L~~L  221 (355)
                      +++| .+..+|..+..+.  +|+.|++++|......|..+.       .+++|++|+++.+.+....     .+++|+.|
T Consensus       384 Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L  462 (636)
T 4eco_A          384 FAHN-KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSI  462 (636)
T ss_dssp             CCSS-CCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEE
T ss_pred             ccCC-cCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEE
Confidence            9887 5667887666543  889999988776666666676       7778888888855444322     35788999


Q ss_pred             EecCCcchhhhhhhhcc----cCCCCCccceeEecccCCcccccCccccccCCCCC--CCCccceEEeccCCCccccccc
Q 018478          222 DIRGNMEIWKSMIEWGQ----GFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLP--LPTSLTSLAIFSFPNLERLSSS  295 (355)
Q Consensus       222 ~l~~~~~~~~~~~~~~~----~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~l~~l~~~  295 (355)
                      ++++|... .++.....    .+.++++|++|++++  +.++.+|...       .  .+++|++|++++ +.++.+|..
T Consensus       463 ~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~--N~l~~lp~~~-------~~~~l~~L~~L~Ls~-N~l~~ip~~  531 (636)
T 4eco_A          463 NLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRF--NKLTKLSDDF-------RATTLPYLVGIDLSY-NSFSKFPTQ  531 (636)
T ss_dssp             ECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCS--SCCCBCCGGG-------STTTCTTCCEEECCS-SCCSSCCCG
T ss_pred             ECCCCCCC-CcCHHHhccccccccccCCccEEECcC--CcCCccChhh-------hhccCCCcCEEECCC-CCCCCcChh
Confidence            99888744 33332210    011233888999988  5666787665       3  567889999998 577778888


Q ss_pred             CCCCCCccEEeeCCCC-----C-CcccCCC-CCCCCccEEEecCCch
Q 018478          296 IVDLQNLTSLYLVGCP-----K-LKYFPEK-GLPSSLLELWIGGCPL  335 (355)
Q Consensus       296 ~~~~~~L~~L~l~~~~-----~-l~~~~~~-~~~~~L~~L~l~~c~~  335 (355)
                      +..+++|++|++++|.     + ...+|.. +-+++|++|++++|.-
T Consensus       532 ~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  578 (636)
T 4eco_A          532 PLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI  578 (636)
T ss_dssp             GGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred             hhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence            8888999999985432     2 3334432 1268899999888864

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.91  E-value=1.2e-22  Score=197.97  Aligned_cols=222  Identities=15%  Similarity=0.100  Sum_probs=127.9

Q ss_pred             CCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCC-CCCCCCCcce
Q 018478           99 LPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPE-GGLPCAKLKE  177 (355)
Q Consensus        99 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~  177 (355)
                      .+++|+.|++++|. +..+|..+..+++|++|++++|......+..+..+++|+.|++++|.....+|. .+..+++|++
T Consensus       276 ~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~  354 (606)
T 3t6q_A          276 CFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRE  354 (606)
T ss_dssp             TCTTCSEEECTTSC-CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCE
T ss_pred             cccCCCEEeccCCc-cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCE
Confidence            34677888887776 667777777778888888887763333455677777777777777644334443 3566777777


Q ss_pred             EEEccccCcCcc--cccccCCCCCceEEEeecCcC-----CCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeE
Q 018478          178 VVIRWCGRLEAL--PKGLHNLKSLQKLTIGKGGLE-----EDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELR  250 (355)
Q Consensus       178 L~l~~~~~~~~~--p~~l~~~~~L~~L~l~~~~i~-----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~  250 (355)
                      |++++|......  +..+..+++|++|+++.+.+.     ....+++|+.|++++|......+.. .  +..+++|++|+
T Consensus       355 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~--~~~l~~L~~L~  431 (606)
T 3t6q_A          355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS-P--FQNLHLLKVLN  431 (606)
T ss_dssp             EECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCC-T--TTTCTTCCEEE
T ss_pred             EECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccch-h--hhCcccCCEEE
Confidence            777775433222  456677777777777633221     1234567777777766543322211 1  45666677777


Q ss_pred             ecccCCcccccCccccccCCCCCCCCccceEEeccCCCccc--c--cccCCCCCCccEEeeCCCCCCcccCCCCC--CCC
Q 018478          251 IEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLER--L--SSSIVDLQNLTSLYLVGCPKLKYFPEKGL--PSS  324 (355)
Q Consensus       251 l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--l--~~~~~~~~~L~~L~l~~~~~l~~~~~~~~--~~~  324 (355)
                      +++ | .+...+...+      ..+++|++|+++++ .+..  +  +..+..+++|++|++++| +++.++...+  +++
T Consensus       432 l~~-n-~l~~~~~~~~------~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~  501 (606)
T 3t6q_A          432 LSH-S-LLDISSEQLF------DGLPALQHLNLQGN-HFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQHAFTSLKM  501 (606)
T ss_dssp             CTT-C-CCBTTCTTTT------TTCTTCCEEECTTC-BCGGGEECSSCGGGGCTTCCEEECTTS-CCCEECTTTTTTCTT
T ss_pred             CCC-C-ccCCcCHHHH------hCCCCCCEEECCCC-CCCccccccchhhccCCCccEEECCCC-ccCccChhhhccccC
Confidence            766 2 3333322211      34556666666663 3332  1  123455666666666665 4555543332  456


Q ss_pred             ccEEEecCCc
Q 018478          325 LLELWIGGCP  334 (355)
Q Consensus       325 L~~L~l~~c~  334 (355)
                      |++|++++|.
T Consensus       502 L~~L~Ls~N~  511 (606)
T 3t6q_A          502 MNHVDLSHNR  511 (606)
T ss_dssp             CCEEECCSSC
T ss_pred             CCEEECCCCc
Confidence            6666666553

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.90  E-value=2.1e-22  Score=190.58  Aligned_cols=282  Identities=17%  Similarity=0.165  Sum_probs=217.3

Q ss_pred             cEEeecccccCcccccCccCCCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccccc
Q 018478            9 EILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELS   88 (355)
Q Consensus         9 ~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~   88 (355)
                      +.++..+ ..++.+| ..+++++++|++++ +.++.++...           |..+++|++|+++++ .++.+       
T Consensus        14 ~~v~c~~-~~l~~ip-~~~~~~l~~L~L~~-n~l~~~~~~~-----------~~~l~~L~~L~L~~n-~i~~~-------   71 (477)
T 2id5_A           14 RAVLCHR-KRFVAVP-EGIPTETRLLDLGK-NRIKTLNQDE-----------FASFPHLEELELNEN-IVSAV-------   71 (477)
T ss_dssp             TEEECCS-CCCSSCC-SCCCTTCSEEECCS-SCCCEECTTT-----------TTTCTTCCEEECTTS-CCCEE-------
T ss_pred             CEEEeCC-CCcCcCC-CCCCCCCcEEECCC-CccceECHhH-----------ccCCCCCCEEECCCC-ccCEe-------
Confidence            4566653 4677787 45678999999999 5677776543           567999999999986 44443       


Q ss_pred             hhcccccc--CCCCCcccEEEEccCcchhchhh-hccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCC
Q 018478           89 ATLESLEV--GNLPPSLKSLRVQGCSKLESIAE-TLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESF  165 (355)
Q Consensus        89 ~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~  165 (355)
                            ..  ...+++|++|++++|. +..+|. .+..+++|++|++++|......+..+..+++|+.|++++|......
T Consensus        72 ------~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~  144 (477)
T 2id5_A           72 ------EPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYIS  144 (477)
T ss_dssp             ------CTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEEC
T ss_pred             ------ChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeC
Confidence                  22  2455899999999988 777765 4688999999999999855555678899999999999997433334


Q ss_pred             CCCCCCCCCcceEEEccccCcCccc-ccccCCCCCceEEEeecCcC---C--CCCCCCccEEEecCCcchhhhhhhhccc
Q 018478          166 PEGGLPCAKLKEVVIRWCGRLEALP-KGLHNLKSLQKLTIGKGGLE---E--DGLPTNLHSLDIRGNMEIWKSMIEWGQG  239 (355)
Q Consensus       166 ~~~~~~~~~L~~L~l~~~~~~~~~p-~~l~~~~~L~~L~l~~~~i~---~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~  239 (355)
                      +..+..+++|++|++++|. ++.++ ..+..+++|+.|+++.+.+.   .  ...+++|+.|++++|......+..    
T Consensus       145 ~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----  219 (477)
T 2id5_A          145 HRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN----  219 (477)
T ss_dssp             TTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTT----
T ss_pred             hhhccCCCCCCEEECCCCc-CcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcc----
Confidence            5677889999999999975 45554 56899999999999944333   2  345689999999998876655543    


Q ss_pred             CCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccccc-cCCCCCCccEEeeCCCCCCcccCC
Q 018478          240 FHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSS-SIVDLQNLTSLYLVGCPKLKYFPE  318 (355)
Q Consensus       240 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~  318 (355)
                      .....+|++|++++  +.++.++...+      ..+++|+.|++++ +.++.++. .+..+++|++|++++| +++.++.
T Consensus       220 ~~~~~~L~~L~l~~--n~l~~~~~~~~------~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~  289 (477)
T 2id5_A          220 CLYGLNLTSLSITH--CNLTAVPYLAV------RHLVYLRFLNLSY-NPISTIEGSMLHELLRLQEIQLVGG-QLAVVEP  289 (477)
T ss_dssp             TTTTCCCSEEEEES--SCCCSCCHHHH------TTCTTCCEEECCS-SCCCEECTTSCTTCTTCCEEECCSS-CCSEECT
T ss_pred             cccCccccEEECcC--CcccccCHHHh------cCccccCeeECCC-CcCCccChhhccccccCCEEECCCC-ccceECH
Confidence            33445999999998  57778885443      5678999999999 56776654 5688999999999998 7888866


Q ss_pred             CCC--CCCccEEEecCCc
Q 018478          319 KGL--PSSLLELWIGGCP  334 (355)
Q Consensus       319 ~~~--~~~L~~L~l~~c~  334 (355)
                      ..+  +++|++|++++|.
T Consensus       290 ~~~~~l~~L~~L~L~~N~  307 (477)
T 2id5_A          290 YAFRGLNYLRVLNVSGNQ  307 (477)
T ss_dssp             TTBTTCTTCCEEECCSSC
T ss_pred             HHhcCcccCCEEECCCCc
Confidence            544  6999999999874

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.90  E-value=4.2e-23  Score=190.36  Aligned_cols=282  Identities=15%  Similarity=0.111  Sum_probs=182.8

Q ss_pred             CCCccEEeecccccCcccccCccC--CCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhc
Q 018478            5 NSSLEILEIWSCRSLTYLAAVQLP--RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIF   82 (355)
Q Consensus         5 ~~~L~~L~l~~~~~l~~l~~~~~~--~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~   82 (355)
                      +++++.|++.++ .++.++...+.  ++|++|+++++ .+..++...           +..+++|++|+++++. ++.+ 
T Consensus        44 l~~l~~l~l~~~-~l~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~-----------~~~l~~L~~L~L~~n~-l~~~-  108 (390)
T 3o6n_A           44 LNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYA-----------FAYAHTIQKLYMGFNA-IRYL-  108 (390)
T ss_dssp             GCCCSEEEEESC-EESEECTHHHHHCCCCSEEECTTS-CCCEECTTT-----------TTTCTTCCEEECCSSC-CCCC-
T ss_pred             cCCceEEEecCC-chhhCChhHhcccccCcEEECCCC-cccccChhh-----------ccCCCCcCEEECCCCC-CCcC-
Confidence            467888888754 46666654333  78888888874 466655432           4557778888887653 3333 


Q ss_pred             cccccchhccccccC--CCCCcccEEEEccCcchhchhhh-ccCCCCCcEEEeeccCCcCcccccccCCCCCceEecccc
Q 018478           83 SKNELSATLESLEVG--NLPPSLKSLRVQGCSKLESIAET-LDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGC  159 (355)
Q Consensus        83 ~~n~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  159 (355)
                                  +..  ..+++|+.|++++|. +..+|.. +..+++|++|++++|......+..+..+++|+.|++++|
T Consensus       109 ------------~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n  175 (390)
T 3o6n_A          109 ------------PPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN  175 (390)
T ss_dssp             ------------CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS
T ss_pred             ------------CHHHhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCC
Confidence                        221  344677777777776 6666644 466777777777777633333445677777777777776


Q ss_pred             CCCcCCCCCCCCCCCcceEEEcccc------------------CcCcccccccCCCCCceEEEeecCcC---CCCCCCCc
Q 018478          160 GNLESFPEGGLPCAKLKEVVIRWCG------------------RLEALPKGLHNLKSLQKLTIGKGGLE---EDGLPTNL  218 (355)
Q Consensus       160 ~~l~~~~~~~~~~~~L~~L~l~~~~------------------~~~~~p~~l~~~~~L~~L~l~~~~i~---~~~~~~~L  218 (355)
                       .++.++  +..+++|+.+++++|.                  .++.+|.  ...++|++|+++.+.+.   ....+++|
T Consensus       176 -~l~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~n~l~~~~~l~~l~~L  250 (390)
T 3o6n_A          176 -RLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG--PVNVELTILKLQHNNLTDTAWLLNYPGL  250 (390)
T ss_dssp             -CCSBCC--GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEEC--CCCSSCCEEECCSSCCCCCGGGGGCTTC
T ss_pred             -cCCccc--cccccccceeecccccccccCCCCcceEEECCCCeeeeccc--cccccccEEECCCCCCcccHHHcCCCCc
Confidence             344332  2223444444444421                  2222322  22356777777743333   23456788


Q ss_pred             cEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccccccCCC
Q 018478          219 HSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVD  298 (355)
Q Consensus       219 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~  298 (355)
                      +.|++++|......+.  .  +..+++|++|++++  +.++.++...       ..+++|++|++++ +.++.+|..+..
T Consensus       251 ~~L~Ls~n~l~~~~~~--~--~~~l~~L~~L~L~~--n~l~~~~~~~-------~~l~~L~~L~L~~-n~l~~~~~~~~~  316 (390)
T 3o6n_A          251 VEVDLSYNELEKIMYH--P--FVKMQRLERLYISN--NRLVALNLYG-------QPIPTLKVLDLSH-NHLLHVERNQPQ  316 (390)
T ss_dssp             SEEECCSSCCCEEESG--G--GTTCSSCCEEECCS--SCCCEEECSS-------SCCTTCCEEECCS-SCCCCCGGGHHH
T ss_pred             cEEECCCCcCCCcChh--H--ccccccCCEEECCC--CcCcccCccc-------CCCCCCCEEECCC-CcceecCccccc
Confidence            8888888764432222  1  67888899999988  5666666544       4567899999998 578888877778


Q ss_pred             CCCccEEeeCCCCCCcccCCCCCCCCccEEEecCCch
Q 018478          299 LQNLTSLYLVGCPKLKYFPEKGLPSSLLELWIGGCPL  335 (355)
Q Consensus       299 ~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~  335 (355)
                      +++|++|++++| +++.++. ..+++|++|++.+++.
T Consensus       317 l~~L~~L~L~~N-~i~~~~~-~~~~~L~~L~l~~N~~  351 (390)
T 3o6n_A          317 FDRLENLYLDHN-SIVTLKL-STHHTLKNLTLSHNDW  351 (390)
T ss_dssp             HTTCSEEECCSS-CCCCCCC-CTTCCCSEEECCSSCE
T ss_pred             cCcCCEEECCCC-ccceeCc-hhhccCCEEEcCCCCc
Confidence            899999999998 6888864 3468999999998874

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.90  E-value=2.4e-22  Score=192.21  Aligned_cols=150  Identities=19%  Similarity=0.231  Sum_probs=92.0

Q ss_pred             CCCCcceEEEccccCcCcccccccCCCCCceEEEeecCcCC-------CCCCCCccEEEecCCcchhhhhhhhcccCCCC
Q 018478          171 PCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEE-------DGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRF  243 (355)
Q Consensus       171 ~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~-------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l  243 (355)
                      .+++|+.|++++|......|..++.+++|++|+++.+.+..       ...+++|+.|++++|......+.. .  +..+
T Consensus       322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~-~--~~~l  398 (520)
T 2z7x_B          322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG-D--CSWT  398 (520)
T ss_dssp             SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC-S--CCCC
T ss_pred             hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccc-h--hccC
Confidence            34455555555544333344555555555555555333321       234455556666555433222221 1  4455


Q ss_pred             CccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEeeCCCCCCcccCCCCC--
Q 018478          244 SSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPEKGL--  321 (355)
Q Consensus       244 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~--  321 (355)
                      ++|++|++++ |.-...++.         ..+++|+.|++++ +.++.+|..+..+++|++|++++| +++.+|...+  
T Consensus       399 ~~L~~L~Ls~-N~l~~~~~~---------~l~~~L~~L~Ls~-N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~  466 (520)
T 2z7x_B          399 KSLLSLNMSS-NILTDTIFR---------CLPPRIKVLDLHS-NKIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDR  466 (520)
T ss_dssp             TTCCEEECCS-SCCCGGGGG---------SCCTTCCEEECCS-SCCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTT
T ss_pred             ccCCEEECcC-CCCCcchhh---------hhcccCCEEECCC-CcccccchhhhcCCCCCEEECCCC-cCCccCHHHhcc
Confidence            6666666665 222222222         1236899999998 588899988889999999999998 8999987533  


Q ss_pred             CCCccEEEecCCch
Q 018478          322 PSSLLELWIGGCPL  335 (355)
Q Consensus       322 ~~~L~~L~l~~c~~  335 (355)
                      +++|++|++.+++.
T Consensus       467 l~~L~~L~l~~N~~  480 (520)
T 2z7x_B          467 LTSLQKIWLHTNPW  480 (520)
T ss_dssp             CTTCCEEECCSSCB
T ss_pred             CCcccEEECcCCCC
Confidence            68999999998763

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.90  E-value=2.2e-22  Score=194.34  Aligned_cols=149  Identities=19%  Similarity=0.219  Sum_probs=87.6

Q ss_pred             CCCcceEEEccccCcCcccccccCCCCCceEEEeecCcCC-------CCCCCCccEEEecCCcchhhhhhhhcccCCCCC
Q 018478          172 CAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEE-------DGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFS  244 (355)
Q Consensus       172 ~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~-------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~  244 (355)
                      +++|+.|++++|......|..++.+++|++|+++.+.+..       ...+++|+.|++++|......+.. .  +..++
T Consensus       352 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-~--~~~l~  428 (562)
T 3a79_B          352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR-T--CAWAE  428 (562)
T ss_dssp             CCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSC-C--CCCCT
T ss_pred             CCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChh-h--hcCcc
Confidence            3444555555443333344445555555555555322221       223445555555555432212211 1  44455


Q ss_pred             ccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEeeCCCCCCcccCCCCC--C
Q 018478          245 SLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPEKGL--P  322 (355)
Q Consensus       245 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~--~  322 (355)
                      +|++|++++ |.-...++.         ..+++|+.|++++ +.++.+|..+..+++|++|++++| +++.+|...+  +
T Consensus       429 ~L~~L~l~~-n~l~~~~~~---------~l~~~L~~L~L~~-N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l  496 (562)
T 3a79_B          429 SILVLNLSS-NMLTGSVFR---------CLPPKVKVLDLHN-NRIMSIPKDVTHLQALQELNVASN-QLKSVPDGVFDRL  496 (562)
T ss_dssp             TCCEEECCS-SCCCGGGGS---------SCCTTCSEEECCS-SCCCCCCTTTTSSCCCSEEECCSS-CCCCCCTTSTTTC
T ss_pred             cCCEEECCC-CCCCcchhh---------hhcCcCCEEECCC-CcCcccChhhcCCCCCCEEECCCC-CCCCCCHHHHhcC
Confidence            555555555 221122221         1226899999998 588899988889999999999998 8999987533  7


Q ss_pred             CCccEEEecCCch
Q 018478          323 SSLLELWIGGCPL  335 (355)
Q Consensus       323 ~~L~~L~l~~c~~  335 (355)
                      ++|++|++.+++.
T Consensus       497 ~~L~~L~l~~N~~  509 (562)
T 3a79_B          497 TSLQYIWLHDNPW  509 (562)
T ss_dssp             TTCCCEECCSCCB
T ss_pred             CCCCEEEecCCCc
Confidence            8999999998763

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.90  E-value=8.1e-23  Score=199.08  Aligned_cols=290  Identities=17%  Similarity=0.173  Sum_probs=213.4

Q ss_pred             CccEEeecccccCcccccCccC--CCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccc
Q 018478            7 SLEILEIWSCRSLTYLAAVQLP--RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSK   84 (355)
Q Consensus         7 ~L~~L~l~~~~~l~~l~~~~~~--~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~   84 (355)
                      +|++|+++++ .++.++...+.  ++|++|+++++ .+..+|..+            ..+++|++|+++++. ++.+   
T Consensus       255 ~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~lp~~l------------~~l~~L~~L~l~~n~-l~~~---  316 (606)
T 3t6q_A          255 SVESINLQKH-YFFNISSNTFHCFSGLQELDLTAT-HLSELPSGL------------VGLSTLKKLVLSANK-FENL---  316 (606)
T ss_dssp             EEEEEECTTC-CCSSCCTTTTTTCTTCSEEECTTS-CCSCCCSSC------------CSCTTCCEEECTTCC-CSBG---
T ss_pred             ceeEEEeecC-ccCccCHHHhccccCCCEEeccCC-ccCCCChhh------------cccccCCEEECccCC-cCcC---
Confidence            6888888864 56777665554  88999999985 577777653            458899999998864 3332   


Q ss_pred             cccchhccccc-cCCCCCcccEEEEccCcchhchhh-hccCCCCCcEEEeeccCCcCcc--cccccCCCCCceEeccccC
Q 018478           85 NELSATLESLE-VGNLPPSLKSLRVQGCSKLESIAE-TLDNSTSLETIHIFYCENMKIL--PSGLHNLRQLQEISIEGCG  160 (355)
Q Consensus        85 n~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~  160 (355)
                            .   + ....+++|+.|++++|.....++. .+..+++|++|++++|......  +..+..+++|+.|++++|.
T Consensus       317 ------~---~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~  387 (606)
T 3t6q_A          317 ------C---QISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE  387 (606)
T ss_dssp             ------G---GGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS
T ss_pred             ------c---hhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc
Confidence                  0   2 124457999999999874445554 4788999999999998843332  5678889999999999985


Q ss_pred             CCcCCCCCCCCCCCcceEEEccccCcCcccc-cccCCCCCceEEEeecCcCC-----CCCCCCccEEEecCCcchhhhhh
Q 018478          161 NLESFPEGGLPCAKLKEVVIRWCGRLEALPK-GLHNLKSLQKLTIGKGGLEE-----DGLPTNLHSLDIRGNMEIWKSMI  234 (355)
Q Consensus       161 ~l~~~~~~~~~~~~L~~L~l~~~~~~~~~p~-~l~~~~~L~~L~l~~~~i~~-----~~~~~~L~~L~l~~~~~~~~~~~  234 (355)
                      .....|..+..+++|+.|++++|......+. .+..+++|++|+++.+.+..     ...+++|+.|++++|........
T Consensus       388 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  467 (606)
T 3t6q_A          388 PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ  467 (606)
T ss_dssp             CEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEEC
T ss_pred             CCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccc
Confidence            4444567788899999999999765444443 48899999999998444332     34578999999999975442211


Q ss_pred             hhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcc-cccccCCCCCCccEEeeCCCCCC
Q 018478          235 EWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLE-RLSSSIVDLQNLTSLYLVGCPKL  313 (355)
Q Consensus       235 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~l~~~~~~~~~L~~L~l~~~~~l  313 (355)
                      . ...+..+++|++|++++  +.+..+++..+      ..+++|++|+++++ .++ ..|..+..+++| +|++++| ++
T Consensus       468 ~-~~~~~~l~~L~~L~Ls~--n~l~~~~~~~~------~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L-~L~L~~N-~l  535 (606)
T 3t6q_A          468 K-TNSLQTLGRLEILVLSF--CDLSSIDQHAF------TSLKMMNHVDLSHN-RLTSSSIEALSHLKGI-YLNLASN-HI  535 (606)
T ss_dssp             S-SCGGGGCTTCCEEECTT--SCCCEECTTTT------TTCTTCCEEECCSS-CCCGGGGGGGTTCCSC-EEECCSS-CC
T ss_pred             c-chhhccCCCccEEECCC--CccCccChhhh------ccccCCCEEECCCC-ccCcCChhHhCccccc-EEECcCC-cc
Confidence            1 11267889999999998  45555543322      56789999999995 555 456678899999 9999999 78


Q ss_pred             cccCCCCC--CCCccEEEecCCch
Q 018478          314 KYFPEKGL--PSSLLELWIGGCPL  335 (355)
Q Consensus       314 ~~~~~~~~--~~~L~~L~l~~c~~  335 (355)
                      +.++...+  +++|++|++.+||.
T Consensus       536 ~~~~~~~~~~l~~L~~L~l~~N~~  559 (606)
T 3t6q_A          536 SIILPSLLPILSQQRTINLRQNPL  559 (606)
T ss_dssp             CCCCGGGHHHHHTSSEEECTTCCE
T ss_pred             cccCHhhcccCCCCCEEeCCCCCc
Confidence            88876544  68999999999874

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.90  E-value=4.7e-22  Score=186.96  Aligned_cols=281  Identities=16%  Similarity=0.160  Sum_probs=191.5

Q ss_pred             EEeecccccCcccccCccCCCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccccch
Q 018478           10 ILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELSA   89 (355)
Q Consensus        10 ~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~~   89 (355)
                      .++..+ .+++.+|.  ++++|++|+++++ .++.++...           +..+++|++|+++++.....+        
T Consensus        14 ~~~c~~-~~l~~lp~--l~~~l~~L~Ls~n-~i~~~~~~~-----------~~~l~~L~~L~L~~n~~~~~i--------   70 (455)
T 3v47_A           14 NAICIN-RGLHQVPE--LPAHVNYVDLSLN-SIAELNETS-----------FSRLQDLQFLKVEQQTPGLVI--------   70 (455)
T ss_dssp             EEECCS-SCCSSCCC--CCTTCCEEECCSS-CCCEECTTT-----------TSSCTTCCEEECCCCSTTCEE--------
T ss_pred             ccCcCC-CCcccCCC--CCCccCEEEecCC-ccCcCChhH-----------hccCccccEEECcCCcccceE--------
Confidence            455553 46778875  7799999999994 577664432           566999999999987543233        


Q ss_pred             hcccccc--CCCCCcccEEEEccCcchhc-hhhhccCCCCCcEEEeeccCCcCccccc--ccCCCCCceEeccccCCCcC
Q 018478           90 TLESLEV--GNLPPSLKSLRVQGCSKLES-IAETLDNSTSLETIHIFYCENMKILPSG--LHNLRQLQEISIEGCGNLES  164 (355)
Q Consensus        90 ~~~~~~~--~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~l~~  164 (355)
                           +.  ...+++|++|++++|. +.. .|..++.+++|++|++++|......+..  +..+++|+.|++++| .+..
T Consensus        71 -----~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~  143 (455)
T 3v47_A           71 -----RNNTFRGLSSLIILKLDYNQ-FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKK  143 (455)
T ss_dssp             -----CTTTTTTCTTCCEEECTTCT-TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSS-BCCS
T ss_pred             -----CcccccccccCCEEeCCCCc-cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCC-ccCc
Confidence                 22  2445899999999998 554 4778999999999999999844444443  888999999999998 4555


Q ss_pred             C-CCC-CCCCCCcceEEEccccCcCcccccccCC----------------------------------CCCceEEEeecC
Q 018478          165 F-PEG-GLPCAKLKEVVIRWCGRLEALPKGLHNL----------------------------------KSLQKLTIGKGG  208 (355)
Q Consensus       165 ~-~~~-~~~~~~L~~L~l~~~~~~~~~p~~l~~~----------------------------------~~L~~L~l~~~~  208 (355)
                      . |.. +..+++|++|++++|......+..+..+                                  ++|++|+++.+.
T Consensus       144 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~  223 (455)
T 3v47_A          144 IQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG  223 (455)
T ss_dssp             CCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSC
T ss_pred             cCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCc
Confidence            5 544 6779999999999976544445555443                                  345555544221


Q ss_pred             cCC-------------------------------------C-------CCCCCccEEEecCCcchhhhhhhhcccCCCCC
Q 018478          209 LEE-------------------------------------D-------GLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFS  244 (355)
Q Consensus       209 i~~-------------------------------------~-------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~  244 (355)
                      +..                                     .       ...++|+.|++++|......+.    .+..++
T Consensus       224 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~----~~~~l~  299 (455)
T 3v47_A          224 FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKS----VFSHFT  299 (455)
T ss_dssp             CCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTT----TTTTCT
T ss_pred             ccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchh----hcccCC
Confidence            110                                     0       0013455555555543322111    156778


Q ss_pred             ccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccc-cccCCCCCCccEEeeCCCCCCcccCCCCC--
Q 018478          245 SLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERL-SSSIVDLQNLTSLYLVGCPKLKYFPEKGL--  321 (355)
Q Consensus       245 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~--  321 (355)
                      +|++|++++  +.+..++...+      ..+++|++|++++ +.++.+ +..+..+++|++|++++| +++.++...+  
T Consensus       300 ~L~~L~Ls~--n~l~~~~~~~~------~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~  369 (455)
T 3v47_A          300 DLEQLTLAQ--NEINKIDDNAF------WGLTHLLKLNLSQ-NFLGSIDSRMFENLDKLEVLDLSYN-HIRALGDQSFLG  369 (455)
T ss_dssp             TCCEEECTT--SCCCEECTTTT------TTCTTCCEEECCS-SCCCEECGGGGTTCTTCCEEECCSS-CCCEECTTTTTT
T ss_pred             CCCEEECCC--CcccccChhHh------cCcccCCEEECCC-CccCCcChhHhcCcccCCEEECCCC-cccccChhhccc
Confidence            888888887  45555543221      4667899999998 466655 456788899999999988 7888755444  


Q ss_pred             CCCccEEEecCCc
Q 018478          322 PSSLLELWIGGCP  334 (355)
Q Consensus       322 ~~~L~~L~l~~c~  334 (355)
                      +++|++|++++|.
T Consensus       370 l~~L~~L~L~~N~  382 (455)
T 3v47_A          370 LPNLKELALDTNQ  382 (455)
T ss_dssp             CTTCCEEECCSSC
T ss_pred             cccccEEECCCCc
Confidence            6899999998874

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.89  E-value=1.7e-22  Score=194.49  Aligned_cols=66  Identities=21%  Similarity=0.199  Sum_probs=33.3

Q ss_pred             CCCCCceEEEeecCcCC--------CCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCcc
Q 018478          195 NLKSLQKLTIGKGGLEE--------DGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPE  264 (355)
Q Consensus       195 ~~~~L~~L~l~~~~i~~--------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~  264 (355)
                      .+++|++|+++.+.+..        .+.+++|+.|++++|...........  +..+++|++|++++  +.++.+|..
T Consensus       332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~~~l~~L~~L~Ls~--N~l~~lp~~  405 (549)
T 2z81_A          332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEI--LLTLKNLTSLDISR--NTFHPMPDS  405 (549)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHH--GGGCTTCCEEECTT--CCCCCCCSC
T ss_pred             cCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhh--hhcCCCCCEEECCC--CCCccCChh
Confidence            45666666666333321        23456666666666653221110011  45566666666666  344555543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.89  E-value=6.6e-22  Score=186.61  Aligned_cols=286  Identities=16%  Similarity=0.177  Sum_probs=134.4

Q ss_pred             CCCccEEeecccccCcccccCccCCCcceEecccCccccccccccCcCCCCC----------CCccccccccccEEEecC
Q 018478            5 NSSLEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSS----------SSSRRYTSYLLEELCISS   74 (355)
Q Consensus         5 ~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~----------~~~~~~~~~~L~~L~l~~   74 (355)
                      +++++.|++.++ .++.++.....++|++|+++++ .++.++...+++++..          .+. +..+++|++|++++
T Consensus        45 l~~l~~L~l~~~-~i~~l~~~~~l~~L~~L~Ls~n-~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~  121 (466)
T 1o6v_A           45 LDQVTTLQADRL-GIKSIDGVEYLNNLTQINFSNN-QLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFN  121 (466)
T ss_dssp             HHTCCEEECCSS-CCCCCTTGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred             hccccEEecCCC-CCccCcchhhhcCCCEEECCCC-ccCCchhhhccccCCEEECCCCccccChh-hcCCCCCCEEECCC
Confidence            456777777654 4555554344477777777774 3555544211111100          000 23355555555554


Q ss_pred             CCccchhccccccchhccccccCCCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceE
Q 018478           75 CRSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEI  154 (355)
Q Consensus        75 ~~~l~~~~~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  154 (355)
                      + .++.+             +....+++|+.|++++|. +..++. +..+++|++|.+.+ . +..++ .+.++++|+.|
T Consensus       122 n-~l~~~-------------~~~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~-~-~~~~~-~~~~l~~L~~L  182 (466)
T 1o6v_A          122 N-QITDI-------------DPLKNLTNLNRLELSSNT-ISDISA-LSGLTSLQQLSFGN-Q-VTDLK-PLANLTTLERL  182 (466)
T ss_dssp             S-CCCCC-------------GGGTTCTTCSEEEEEEEE-ECCCGG-GTTCTTCSEEEEEE-S-CCCCG-GGTTCTTCCEE
T ss_pred             C-CCCCC-------------hHHcCCCCCCEEECCCCc-cCCChh-hccCCcccEeecCC-c-ccCch-hhccCCCCCEE
Confidence            3 23333             323444677777777765 444432 44445555544432 1 12221 24445555555


Q ss_pred             eccccCCCcCCCCCCCCCCCcceEEEccccC---------------------cCcccccccCCCCCceEEEeecCc---C
Q 018478          155 SIEGCGNLESFPEGGLPCAKLKEVVIRWCGR---------------------LEALPKGLHNLKSLQKLTIGKGGL---E  210 (355)
Q Consensus       155 ~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~---------------------~~~~p~~l~~~~~L~~L~l~~~~i---~  210 (355)
                      ++++| .+..++ .+..+++|+.|++++|..                     ++.+ ..+..+++|++|+++.+.+   +
T Consensus       183 ~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~  259 (466)
T 1o6v_A          183 DISSN-KVSDIS-VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLA  259 (466)
T ss_dssp             ECCSS-CCCCCG-GGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCG
T ss_pred             ECcCC-cCCCCh-hhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccc-hhhhcCCCCCEEECCCCccccch
Confidence            55554 233322 133344555555544322                     2222 1233344444444442111   1


Q ss_pred             CCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcc
Q 018478          211 EDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLE  290 (355)
Q Consensus       211 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  290 (355)
                      ....+++|+.|++++|.... .+.     +..+++|++|++++  +.+..++. .       ..+++|++|++++| .++
T Consensus       260 ~~~~l~~L~~L~l~~n~l~~-~~~-----~~~l~~L~~L~L~~--n~l~~~~~-~-------~~l~~L~~L~L~~n-~l~  322 (466)
T 1o6v_A          260 PLSGLTKLTELKLGANQISN-ISP-----LAGLTALTNLELNE--NQLEDISP-I-------SNLKNLTYLTLYFN-NIS  322 (466)
T ss_dssp             GGTTCTTCSEEECCSSCCCC-CGG-----GTTCTTCSEEECCS--SCCSCCGG-G-------GGCTTCSEEECCSS-CCS
T ss_pred             hhhcCCCCCEEECCCCccCc-ccc-----ccCCCccCeEEcCC--CcccCchh-h-------cCCCCCCEEECcCC-cCC
Confidence            12233444444444443221 111     34455555555555  23333332 1       24456666666663 444


Q ss_pred             cccccCCCCCCccEEeeCCCCCCcccCCCCCCCCccEEEecCCc
Q 018478          291 RLSSSIVDLQNLTSLYLVGCPKLKYFPEKGLPSSLLELWIGGCP  334 (355)
Q Consensus       291 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~  334 (355)
                      .++. +..+++|++|++++| +++.++.-..+++|++|++++|.
T Consensus       323 ~~~~-~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~  364 (466)
T 1o6v_A          323 DISP-VSSLTKLQRLFFYNN-KVSDVSSLANLTNINWLSAGHNQ  364 (466)
T ss_dssp             CCGG-GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC
T ss_pred             Cchh-hccCccCCEeECCCC-ccCCchhhccCCCCCEEeCCCCc
Confidence            4433 456667777777766 56665443346777777777664

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.89  E-value=5.2e-22  Score=191.09  Aligned_cols=106  Identities=18%  Similarity=0.144  Sum_probs=65.6

Q ss_pred             CCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCc---cccccCCCCCCCCccceEEeccCCCccc
Q 018478          215 PTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPP---EDIRMGTTLPLPTSLTSLAIFSFPNLER  291 (355)
Q Consensus       215 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~~~~~~~~~~~L~~L~l~~~~~l~~  291 (355)
                      +++|+.|++++|......+... ..+..+++|++|++++  +.++.++.   .+       ..+++|++|++++ +.++.
T Consensus       333 l~~L~~L~Ls~N~l~~~~~~~~-~~~~~l~~L~~L~Ls~--N~l~~~~~~~~~~-------~~l~~L~~L~Ls~-N~l~~  401 (549)
T 2z81_A          333 LKSLEFLDLSENLMVEEYLKNS-ACKGAWPSLQTLVLSQ--NHLRSMQKTGEIL-------LTLKNLTSLDISR-NTFHP  401 (549)
T ss_dssp             CTTCCEEECCSSCCCHHHHHHH-TCTTSSTTCCEEECTT--SCCCCHHHHHHHG-------GGCTTCCEEECTT-CCCCC
T ss_pred             CccccEEEccCCccccccccch-hhhhccccCcEEEccC--Ccccccccchhhh-------hcCCCCCEEECCC-CCCcc
Confidence            4566677777666443332210 1145677788888877  45554432   12       4567888888888 57778


Q ss_pred             ccccCCCCCCccEEeeCCCCCCcccCCCCCCCCccEEEecCC
Q 018478          292 LSSSIVDLQNLTSLYLVGCPKLKYFPEKGLPSSLLELWIGGC  333 (355)
Q Consensus       292 l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c  333 (355)
                      +|..+..+++|++|++++| +++.++.. ++++|++|++++|
T Consensus       402 lp~~~~~~~~L~~L~Ls~N-~l~~l~~~-~~~~L~~L~Ls~N  441 (549)
T 2z81_A          402 MPDSCQWPEKMRFLNLSST-GIRVVKTC-IPQTLEVLDVSNN  441 (549)
T ss_dssp             CCSCCCCCTTCCEEECTTS-CCSCCCTT-SCTTCSEEECCSS
T ss_pred             CChhhcccccccEEECCCC-Ccccccch-hcCCceEEECCCC
Confidence            8877777888888888887 57666542 2344555554443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.89  E-value=2.1e-22  Score=195.74  Aligned_cols=282  Identities=15%  Similarity=0.116  Sum_probs=176.9

Q ss_pred             CCCccEEeecccccCcccccCccC--CCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhc
Q 018478            5 NSSLEILEIWSCRSLTYLAAVQLP--RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIF   82 (355)
Q Consensus         5 ~~~L~~L~l~~~~~l~~l~~~~~~--~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~   82 (355)
                      +++++.+++.++ .+..+|...+.  ++|++|+++++ .+..++...           +..+++|++|+++++. ++.+ 
T Consensus        50 l~~l~~l~l~~~-~l~~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~-----------~~~l~~L~~L~L~~n~-l~~~-  114 (597)
T 3oja_B           50 LNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYA-----------FAYAHTIQKLYMGFNA-IRYL-  114 (597)
T ss_dssp             GCCCSEEEESSC-EESEECTHHHHHCCCCSEEECTTS-CCCEECTTT-----------TTTCTTCCEEECCSSC-CCCC-
T ss_pred             CCCceEEEeeCC-CCCCcCHHHHccCCCCcEEECCCC-CCCCCChHH-----------hcCCCCCCEEECCCCc-CCCC-
Confidence            356677777653 45555544333  67777777774 455555432           4557777777777653 3333 


Q ss_pred             cccccchhccccccC--CCCCcccEEEEccCcchhchhhh-ccCCCCCcEEEeeccCCcCcccccccCCCCCceEecccc
Q 018478           83 SKNELSATLESLEVG--NLPPSLKSLRVQGCSKLESIAET-LDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGC  159 (355)
Q Consensus        83 ~~n~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  159 (355)
                                  +..  ..+++|+.|++++|. +..+|+. ++.+++|++|++++|......|..++.+++|+.|++++|
T Consensus       115 ------------~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N  181 (597)
T 3oja_B          115 ------------PPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN  181 (597)
T ss_dssp             ------------CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS
T ss_pred             ------------CHHHHcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC
Confidence                        221  344677777777765 5555544 466777777777776633333445666777777777765


Q ss_pred             CCCcCCCCCCCCCCCcceEEEcccc------------------CcCcccccccCCCCCceEEEeecCcC---CCCCCCCc
Q 018478          160 GNLESFPEGGLPCAKLKEVVIRWCG------------------RLEALPKGLHNLKSLQKLTIGKGGLE---EDGLPTNL  218 (355)
Q Consensus       160 ~~l~~~~~~~~~~~~L~~L~l~~~~------------------~~~~~p~~l~~~~~L~~L~l~~~~i~---~~~~~~~L  218 (355)
                       .+..++  +..+++|+.|++++|.                  .+..++..+  .++|+.|+++.+.+.   ....+++|
T Consensus       182 -~l~~~~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~~~~l~~l~~L  256 (597)
T 3oja_B          182 -RLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDTAWLLNYPGL  256 (597)
T ss_dssp             -CCSBCC--GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCCCGGGGGCTTC
T ss_pred             -CCCCcC--hhhhhhhhhhhcccCccccccCCchhheeeccCCccccccccc--CCCCCEEECCCCCCCCChhhccCCCC
Confidence             344333  2223344444444431                  122222221  246777777633333   23456788


Q ss_pred             cEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccccccCCC
Q 018478          219 HSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVD  298 (355)
Q Consensus       219 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~  298 (355)
                      +.|++++|......+.  .  +..+++|+.|++++  +.+..++...       ..+++|+.|++++ +.+..+|..+..
T Consensus       257 ~~L~Ls~N~l~~~~~~--~--~~~l~~L~~L~Ls~--N~l~~l~~~~-------~~l~~L~~L~Ls~-N~l~~i~~~~~~  322 (597)
T 3oja_B          257 VEVDLSYNELEKIMYH--P--FVKMQRLERLYISN--NRLVALNLYG-------QPIPTLKVLDLSH-NHLLHVERNQPQ  322 (597)
T ss_dssp             SEEECCSSCCCEEESG--G--GTTCSSCCEEECTT--SCCCEEECSS-------SCCTTCCEEECCS-SCCCCCGGGHHH
T ss_pred             CEEECCCCccCCCCHH--H--hcCccCCCEEECCC--CCCCCCCccc-------ccCCCCcEEECCC-CCCCccCccccc
Confidence            8888888764433222  1  67888899999988  5666666544       4577899999998 577788887888


Q ss_pred             CCCccEEeeCCCCCCcccCCCCCCCCccEEEecCCch
Q 018478          299 LQNLTSLYLVGCPKLKYFPEKGLPSSLLELWIGGCPL  335 (355)
Q Consensus       299 ~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~  335 (355)
                      +++|++|++++| +++.++. ..+++|++|++.+++.
T Consensus       323 l~~L~~L~L~~N-~l~~~~~-~~~~~L~~L~l~~N~~  357 (597)
T 3oja_B          323 FDRLENLYLDHN-SIVTLKL-STHHTLKNLTLSHNDW  357 (597)
T ss_dssp             HTTCSEEECCSS-CCCCCCC-CTTCCCSEEECCSSCE
T ss_pred             CCCCCEEECCCC-CCCCcCh-hhcCCCCEEEeeCCCC
Confidence            899999999998 6887764 3468999999999874

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.88  E-value=1.7e-21  Score=192.29  Aligned_cols=314  Identities=17%  Similarity=0.102  Sum_probs=212.0

Q ss_pred             CCCCCccEEeecccccCcccccCccC--CCcceEecccCcccc-----cccc---cc--CcCCCC-----------CCCc
Q 018478            3 DTNSSLEILEIWSCRSLTYLAAVQLP--RSLKRLDIQCCSNIR-----TLTM---EE--GIQSSS-----------SSSS   59 (355)
Q Consensus         3 ~~~~~L~~L~l~~~~~l~~l~~~~~~--~~L~~L~l~~~~~l~-----~~~~---~~--~~~~~~-----------~~~~   59 (355)
                      +.+++|++|+++++ .++.+.+..+.  ++|++|+++++..-.     .+|.   ..  .++++.           ..+.
T Consensus       269 ~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~  347 (680)
T 1ziw_A          269 AWLPQLEYFFLEYN-NIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN  347 (680)
T ss_dssp             TTCTTCCEEECCSC-CBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTT
T ss_pred             cCcccccEeeCCCC-ccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChh
Confidence            45788999999865 45555444443  788888887642111     1221   00  000000           0122


Q ss_pred             cccccccccEEEecCCCc-cchhccccccchhccccccCC----CCCcccEEEEccCcchhchhhhccCCCCCcEEEeec
Q 018478           60 RRYTSYLLEELCISSCRS-LTSIFSKNELSATLESLEVGN----LPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFY  134 (355)
Q Consensus        60 ~~~~~~~L~~L~l~~~~~-l~~~~~~n~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  134 (355)
                      .+..+++|++|+++++.. +..+             +...    ..++|+.|++++|......|..+..+++|++|++++
T Consensus       348 ~~~~l~~L~~L~Ls~n~~~~~~l-------------~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  414 (680)
T 1ziw_A          348 MFTGLINLKYLSLSNSFTSLRTL-------------TNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGL  414 (680)
T ss_dssp             TTTTCTTCCEEECTTCBSCCCEE-------------CTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             HhccccCCcEEECCCCchhhhhc-------------chhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCC
Confidence            244455555555544321 1111             1111    115789999998873334466788899999999999


Q ss_pred             cCCcCccc-ccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEccccC--cCcccccccCCCCCceEEEeecCcC-
Q 018478          135 CENMKILP-SGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGR--LEALPKGLHNLKSLQKLTIGKGGLE-  210 (355)
Q Consensus       135 ~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~--~~~~p~~l~~~~~L~~L~l~~~~i~-  210 (355)
                      |.....++ ..+..+++|+.|++++|......+..+..+++|+.|++.+|..  +...|..+..+++|++|+++.+.+. 
T Consensus       415 N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~  494 (680)
T 1ziw_A          415 NEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN  494 (680)
T ss_dssp             SCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCC
T ss_pred             CcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCc
Confidence            88545555 5788899999999999853333456677789999999998753  2466788999999999999844433 


Q ss_pred             --C--CCCCCCccEEEecCCcchhhhhhhh----cccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEE
Q 018478          211 --E--DGLPTNLHSLDIRGNMEIWKSMIEW----GQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLA  282 (355)
Q Consensus       211 --~--~~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  282 (355)
                        .  ...+++|+.|++++|..........    ...+.++++|++|++++  +.++.+|.+.+      ...++|++|+
T Consensus       495 i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~--N~l~~i~~~~~------~~l~~L~~L~  566 (680)
T 1ziw_A          495 INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES--NGFDEIPVEVF------KDLFELKIID  566 (680)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCS--SCCCCCCTTTT------TTCTTCCEEE
T ss_pred             CChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCC--CCCCCCCHHHc------ccccCcceeE
Confidence              2  3456899999999987443211100    01167889999999998  67778887543      5678999999


Q ss_pred             eccCCCccccccc-CCCCCCccEEeeCCCCCCcccCCCC---CCCCccEEEecCCchhhHhhh
Q 018478          283 IFSFPNLERLSSS-IVDLQNLTSLYLVGCPKLKYFPEKG---LPSSLLELWIGGCPLIEEKCR  341 (355)
Q Consensus       283 l~~~~~l~~l~~~-~~~~~~L~~L~l~~~~~l~~~~~~~---~~~~L~~L~l~~c~~l~~~~~  341 (355)
                      +++ +.++.+|.. +..+++|++|++++| +++.++...   .+++|+++++.++|. .+.|+
T Consensus       567 Ls~-N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~~-~c~c~  626 (680)
T 1ziw_A          567 LGL-NNLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNPF-DCTCE  626 (680)
T ss_dssp             CCS-SCCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCCC-CBCCC
T ss_pred             CCC-CCCCcCCHhHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCCc-ccCCc
Confidence            998 788888865 478999999999998 899887653   358999999998875 33444

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.88  E-value=8.1e-22  Score=192.00  Aligned_cols=261  Identities=15%  Similarity=0.073  Sum_probs=196.1

Q ss_pred             CCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccccchhccccccCCCCCcccEEEE
Q 018478           29 RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRV  108 (355)
Q Consensus        29 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~~~~~~L~~L~l  108 (355)
                      ++|++|++.++ .+..++ .            +..+++|++|++++|.. ..+             +.. .+++|+.|++
T Consensus       285 ~~L~~L~l~~~-~~~~l~-~------------l~~~~~L~~L~l~~n~l-~~l-------------p~~-~l~~L~~L~l  335 (606)
T 3vq2_A          285 ANVSAMSLAGV-SIKYLE-D------------VPKHFKWQSLSIIRCQL-KQF-------------PTL-DLPFLKSLTL  335 (606)
T ss_dssp             TTCSEEEEESC-CCCCCC-C------------CCTTCCCSEEEEESCCC-SSC-------------CCC-CCSSCCEEEE
T ss_pred             CCCCEEEecCc-cchhhh-h------------ccccccCCEEEcccccC-ccc-------------ccC-CCCccceeec
Confidence            78888888884 456666 2            34478899999988754 666             644 5678999999


Q ss_pred             ccCcchhchhhhccCCCCCcEEEeeccCCcCcc---cccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEccccC
Q 018478          109 QGCSKLESIAETLDNSTSLETIHIFYCENMKIL---PSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGR  185 (355)
Q Consensus       109 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~---~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~  185 (355)
                      ++|.....+  .+..+++|++|++++|. +...   +..+..+++|+.|++++| .+..+|..+..+++|+.|++++|..
T Consensus       336 ~~n~~~~~~--~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~l~~n~l  411 (606)
T 3vq2_A          336 TMNKGSISF--KKVALPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLSFN-GAIIMSANFMGLEELQHLDFQHSTL  411 (606)
T ss_dssp             ESCSSCEEC--CCCCCTTCCEEECCSSC-EEEEEECCHHHHCCSCCCEEECCSC-SEEEECCCCTTCTTCCEEECTTSEE
T ss_pred             cCCcCccch--hhccCCCCCEEECcCCc-cCCCcchhhhhccCCcccEeECCCC-ccccchhhccCCCCCCeeECCCCcc
Confidence            998645544  45678999999999887 4443   677888999999999987 5777888888899999999999765


Q ss_pred             cCccc-ccccCCCCCceEEEeecCcC-----CCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCccc
Q 018478          186 LEALP-KGLHNLKSLQKLTIGKGGLE-----EDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMV  259 (355)
Q Consensus       186 ~~~~p-~~l~~~~~L~~L~l~~~~i~-----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  259 (355)
                      ....| ..+..+++|++|+++.+.+.     ....+++|+.|++++|.......+. .  +..+++|++|++++  +.+.
T Consensus       412 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~--~~~l~~L~~L~Ls~--n~l~  486 (606)
T 3vq2_A          412 KRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSN-V--FANTTNLTFLDLSK--CQLE  486 (606)
T ss_dssp             ESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS-C--CTTCTTCCEEECTT--SCCC
T ss_pred             CCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHH-h--hccCCCCCEEECCC--CcCC
Confidence            55445 57888999999999843332     2456789999999998755432222 2  78899999999998  4555


Q ss_pred             ccCccccccCCCCCCCCccceEEeccCCCcccc-cccCCCCCCccEEeeCCCCCCcccCCC--CCCCCccEEEecCCch
Q 018478          260 SFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERL-SSSIVDLQNLTSLYLVGCPKLKYFPEK--GLPSSLLELWIGGCPL  335 (355)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~c~~  335 (355)
                      .+++..+      ..+++|++|++++| .++.+ |..+..+++|++|++++| +++.+|..  .++.+|++|++.++|.
T Consensus       487 ~~~~~~~------~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N~~  557 (606)
T 3vq2_A          487 QISWGVF------DTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTNNSV  557 (606)
T ss_dssp             EECTTTT------TTCTTCCEEECCSS-CCSCEEGGGTTTCTTCCEEECTTS-CCCCEESCGGGSCTTCCEEECCSCCC
T ss_pred             ccChhhh------cccccCCEEECCCC-cCCCcCHHHccCCCcCCEEECCCC-cCcccCHhHhhhcccCcEEEccCCCc
Confidence            5544322      56789999999995 55554 777889999999999998 79988875  1234799999988764

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.88  E-value=1.1e-21  Score=191.08  Aligned_cols=116  Identities=22%  Similarity=0.244  Sum_probs=58.0

Q ss_pred             CCccEEeecccccCcccccCccC--CCcceEecccCcccccccccc--CcCCCCC-----------CCccccccccccEE
Q 018478            6 SSLEILEIWSCRSLTYLAAVQLP--RSLKRLDIQCCSNIRTLTMEE--GIQSSSS-----------SSSRRYTSYLLEEL   70 (355)
Q Consensus         6 ~~L~~L~l~~~~~l~~l~~~~~~--~~L~~L~l~~~~~l~~~~~~~--~~~~~~~-----------~~~~~~~~~~L~~L   70 (355)
                      +++++|++++ +.++.++...+.  ++|++|+++++ .+..++...  +++++..           .+..+..+++|++|
T Consensus        32 ~~l~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  109 (606)
T 3vq2_A           32 SSTKNIDLSF-NPLKILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENL  109 (606)
T ss_dssp             TTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEE
T ss_pred             CCcCEEECCC-CCcCEeChhhccCCccCcEEeCCCC-cccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEE
Confidence            4577777764 355666554443  67777777764 355543321  1111100           02223445555555


Q ss_pred             EecCCCccchhccccccchhccccccCCCCCcccEEEEccCcchh--chhhhccCCCCCcEEEeeccC
Q 018478           71 CISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQGCSKLE--SIAETLDNSTSLETIHIFYCE  136 (355)
Q Consensus        71 ~l~~~~~l~~~~~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~  136 (355)
                      +++++. ++.+         .+  .....+++|++|++++|. +.  .+|..++++++|++|++++|.
T Consensus       110 ~L~~n~-l~~~---------~~--~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~Ls~n~  164 (606)
T 3vq2_A          110 VAVETK-LASL---------ES--FPIGQLITLKKLNVAHNF-IHSCKLPAYFSNLTNLVHVDLSYNY  164 (606)
T ss_dssp             ECTTSC-CCCS---------SS--SCCTTCTTCCEEECCSSC-CCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred             EccCCc-cccc---------cc--cccCCCCCCCEEeCCCCc-ccceechHhHhhcCCCCEEEccCCc
Confidence            555432 2222         00  011334566666666665 33  356666666666666666665

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.88  E-value=6.4e-22  Score=197.90  Aligned_cols=282  Identities=15%  Similarity=0.163  Sum_probs=163.5

Q ss_pred             CCcceEecccCccccc------------------cccccCcCCCCCCCccccccccccEEEecCCCccchh---------
Q 018478           29 RSLKRLDIQCCSNIRT------------------LTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSI---------   81 (355)
Q Consensus        29 ~~L~~L~l~~~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~---------   81 (355)
                      ++|++|+++++ .+..                  +|..++          |..+++|++|++++|.....+         
T Consensus       448 ~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~iP~~l~----------f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~  516 (876)
T 4ecn_A          448 TKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEELS----------WSNLKDLTDVELYNCPNMTQLPDFLYDLPE  516 (876)
T ss_dssp             TTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCC----------GGGCTTCCEEEEESCTTCCSCCGGGGGCSS
T ss_pred             CCCCEEECcCC-cCCCCcccccccccccccccccCChhhh----------hccCCCCCEEECcCCCCCccChHHHhCCCC
Confidence            78999999985 4665                  555431          226899999999877432222         


Q ss_pred             -----ccccc-cch-hccc----cc-cCCCCCcccEEEEccCcchhchhh--hccCCCCCcEEEeeccCCcCcccccccC
Q 018478           82 -----FSKNE-LSA-TLES----LE-VGNLPPSLKSLRVQGCSKLESIAE--TLDNSTSLETIHIFYCENMKILPSGLHN  147 (355)
Q Consensus        82 -----~~~n~-~~~-~~~~----~~-~~~~~~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~  147 (355)
                           +++|. +.+ .++.    .. ....+++|+.|++++|. +..+|.  .++.+++|+.|++++|. +..+| .++.
T Consensus       517 L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~  593 (876)
T 4ecn_A          517 LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNK-VRHLE-AFGT  593 (876)
T ss_dssp             CCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-CCCT
T ss_pred             CCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCC-cccch-hhcC
Confidence                 33443 332 2211    00 01122355555555555 335554  55555555555555555 33555 4555


Q ss_pred             CCCCceEeccccCCCcCCCCCCCCCCC-cceEEEccccCcCcccccccCCCC--CceEEEeecCc----CCCC------C
Q 018478          148 LRQLQEISIEGCGNLESFPEGGLPCAK-LKEVVIRWCGRLEALPKGLHNLKS--LQKLTIGKGGL----EEDG------L  214 (355)
Q Consensus       148 l~~L~~L~l~~~~~l~~~~~~~~~~~~-L~~L~l~~~~~~~~~p~~l~~~~~--L~~L~l~~~~i----~~~~------~  214 (355)
                      +++|+.|++++| .+..+|..+..+++ |+.|++++|. ++.+|..+..++.  |+.|+++.+.+    +...      .
T Consensus       594 L~~L~~L~Ls~N-~l~~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~  671 (876)
T 4ecn_A          594 NVKLTDLKLDYN-QIEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYK  671 (876)
T ss_dssp             TSEESEEECCSS-CCSCCCTTSCEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCC
T ss_pred             CCcceEEECcCC-ccccchHHHhhccccCCEEECcCCC-CCcCchhhhccccCCCCEEECcCCcCCCccccchhhhcccc
Confidence            555555555554 33455555555555 6666665543 3355544444332  55665553332    1111      1


Q ss_pred             CCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCccccccCC-CCCCCCccceEEeccCCCccccc
Q 018478          215 PTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGT-TLPLPTSLTSLAIFSFPNLERLS  293 (355)
Q Consensus       215 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~l~  293 (355)
                      .++|+.|++++|... .++..+   +..+++|+.|++++  +.+..+|...+.... ....+++|++|++++ +.++.+|
T Consensus       672 ~~~L~~L~Ls~N~L~-~lp~~~---~~~l~~L~~L~Ls~--N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~-N~L~~lp  744 (876)
T 4ecn_A          672 GINASTVTLSYNEIQ-KFPTEL---FATGSPISTIILSN--NLMTSIPENSLKPKDGNYKNTYLLTTIDLRF-NKLTSLS  744 (876)
T ss_dssp             CCCEEEEECCSSCCC-SCCHHH---HHTTCCCSEEECCS--CCCSCCCTTSSSCTTSCCTTGGGCCEEECCS-SCCCCCC
T ss_pred             CCCcCEEEccCCcCC-ccCHHH---HccCCCCCEEECCC--CcCCccChHHhccccccccccCCccEEECCC-CCCccch
Confidence            236777777776543 333322   45678888888887  466677765521000 001123899999998 5778888


Q ss_pred             ccCC--CCCCccEEeeCCCCCCcccCCCC-CCCCccEEEecCCc
Q 018478          294 SSIV--DLQNLTSLYLVGCPKLKYFPEKG-LPSSLLELWIGGCP  334 (355)
Q Consensus       294 ~~~~--~~~~L~~L~l~~~~~l~~~~~~~-~~~~L~~L~l~~c~  334 (355)
                      ..+.  .+++|+.|++++| +++.+|... -+++|++|++++|+
T Consensus       745 ~~l~~~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~N~  787 (876)
T 4ecn_A          745 DDFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQR  787 (876)
T ss_dssp             GGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCTTCCEEECCCCB
T ss_pred             HHhhhccCCCcCEEEeCCC-CCCccchhhhcCCCCCEEECCCCC
Confidence            8776  8999999999998 788876532 27899999998755

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.88  E-value=2.1e-21  Score=185.60  Aligned_cols=122  Identities=19%  Similarity=0.161  Sum_probs=70.6

Q ss_pred             CCccEEeecccccCcccccCccC--CCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhcc
Q 018478            6 SSLEILEIWSCRSLTYLAAVQLP--RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFS   83 (355)
Q Consensus         6 ~~L~~L~l~~~~~l~~l~~~~~~--~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~   83 (355)
                      ++|++|+++++ .++.+++..+.  ++|++|+++++ .+..++...           +..+++|++|+++++ .++.+  
T Consensus        21 ~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~-----------~~~l~~L~~L~Ls~N-~l~~l--   84 (520)
T 2z7x_B           21 QKTTILNISQN-YISELWTSDILSLSKLRILIISHN-RIQYLDISV-----------FKFNQELEYLDLSHN-KLVKI--   84 (520)
T ss_dssp             TTCSEEECCSS-CCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGG-----------GTTCTTCCEEECCSS-CCCEE--
T ss_pred             ccccEEECCCC-cccccChhhccccccccEEecCCC-ccCCcChHH-----------hhcccCCCEEecCCC-ceeec--
Confidence            46777777654 35544433332  66777777773 455543322           455777888888765 44455  


Q ss_pred             ccccchhccccccCCCCCcccEEEEccCcchhc--hhhhccCCCCCcEEEeeccCCcCcccccccCCCCC--ceEecccc
Q 018478           84 KNELSATLESLEVGNLPPSLKSLRVQGCSKLES--IAETLDNSTSLETIHIFYCENMKILPSGLHNLRQL--QEISIEGC  159 (355)
Q Consensus        84 ~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~  159 (355)
                                 +.. .+++|++|++++|. +..  +|..++.+++|++|++++|. +..  ..+..+++|  +.|++++|
T Consensus        85 -----------p~~-~l~~L~~L~L~~N~-l~~~~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~l~~n  148 (520)
T 2z7x_B           85 -----------SCH-PTVNLKHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTTH-LEK--SSVLPIAHLNISKVLLVLG  148 (520)
T ss_dssp             -----------ECC-CCCCCSEEECCSSC-CSSCCCCGGGGGCTTCCEEEEEESS-CCG--GGGGGGTTSCEEEEEEEEC
T ss_pred             -----------Ccc-ccCCccEEeccCCc-cccccchhhhccCCcceEEEecCcc-cch--hhccccccceeeEEEeecc
Confidence                       544 45677777777776 443  45666777777777777765 322  123334444  55555544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.88  E-value=4.2e-22  Score=179.24  Aligned_cols=214  Identities=23%  Similarity=0.307  Sum_probs=107.3

Q ss_pred             cccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEc
Q 018478          102 SLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIR  181 (355)
Q Consensus       102 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~  181 (355)
                      +++.|++++|. +..+|+.++.+++|++|++++|. +..+|..++.+++|+.|++++| .+..+|..+..+++|+.|+++
T Consensus        82 ~l~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L~  158 (328)
T 4fcg_A           82 GRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSIR  158 (328)
T ss_dssp             TCCEEEEESSC-CSSCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEEE
T ss_pred             ceeEEEccCCC-chhcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEECC
Confidence            44555555444 44444444445555555555444 3344444444555555555544 333444444444555555555


Q ss_pred             cccCcCcccccccC---------CCCCceEEEeecCcC---C-CCCCCCccEEEecCCcchhhhhhhhcccCCCCCccce
Q 018478          182 WCGRLEALPKGLHN---------LKSLQKLTIGKGGLE---E-DGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRE  248 (355)
Q Consensus       182 ~~~~~~~~p~~l~~---------~~~L~~L~l~~~~i~---~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~  248 (355)
                      +|+....+|..+..         +++|++|+++.+.+.   . ...+++|+.|++++|... ..+..    +..+++|++
T Consensus       159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~-~l~~~----l~~l~~L~~  233 (328)
T 4fcg_A          159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGPA----IHHLPKLEE  233 (328)
T ss_dssp             EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC-CCCGG----GGGCTTCCE
T ss_pred             CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC-cCchh----hccCCCCCE
Confidence            54444444443322         455555555522222   1 123345555555555432 22221    445566666


Q ss_pred             eEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEeeCCCCCCcccCCCC-CCCCccE
Q 018478          249 LRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPEKG-LPSSLLE  327 (355)
Q Consensus       249 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~L~~  327 (355)
                      |++++ |.....+|..+       ..+++|++|++++|+....+|..+..+++|++|++++|..+..+|... -+++|+.
T Consensus       234 L~Ls~-n~~~~~~p~~~-------~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~  305 (328)
T 4fcg_A          234 LDLRG-CTALRNYPPIF-------GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCI  305 (328)
T ss_dssp             EECTT-CTTCCBCCCCT-------TCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCE
T ss_pred             EECcC-CcchhhhHHHh-------cCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceE
Confidence            66666 45555555444       345566666666665556666666666666666666665555555421 1455666


Q ss_pred             EEec
Q 018478          328 LWIG  331 (355)
Q Consensus       328 L~l~  331 (355)
                      +++.
T Consensus       306 l~l~  309 (328)
T 4fcg_A          306 ILVP  309 (328)
T ss_dssp             EECC
T ss_pred             EeCC
Confidence            6554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.88  E-value=3e-21  Score=173.87  Aligned_cols=259  Identities=14%  Similarity=0.158  Sum_probs=188.0

Q ss_pred             CCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccccchhcccccc--CCCCCcccEE
Q 018478           29 RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEV--GNLPPSLKSL  106 (355)
Q Consensus        29 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~--~~~~~~L~~L  106 (355)
                      .+++.++++++ .++.+|...              .++++.|+++++ .++.+             +.  ...+++|++|
T Consensus        31 c~l~~l~~~~~-~l~~lp~~~--------------~~~l~~L~L~~n-~i~~~-------------~~~~~~~l~~L~~L   81 (330)
T 1xku_A           31 CHLRVVQCSDL-GLEKVPKDL--------------PPDTALLDLQNN-KITEI-------------KDGDFKNLKNLHTL   81 (330)
T ss_dssp             EETTEEECTTS-CCCSCCCSC--------------CTTCCEEECCSS-CCCCB-------------CTTTTTTCTTCCEE
T ss_pred             CCCeEEEecCC-CccccCccC--------------CCCCeEEECCCC-cCCEe-------------ChhhhccCCCCCEE
Confidence            36788888773 467777655              567888888875 44544             32  2445788888


Q ss_pred             EEccCcchhch-hhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCC-CCCCCCCCcceEEEcccc
Q 018478          107 RVQGCSKLESI-AETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFP-EGGLPCAKLKEVVIRWCG  184 (355)
Q Consensus       107 ~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~~~  184 (355)
                      ++++|. +..+ |..+..+++|++|++++|. ++.+|..+.  ++|+.|++++| .+..++ ..+..+++|+.|++++|.
T Consensus        82 ~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~  156 (330)
T 1xku_A           82 ILINNK-ISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMP--KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNP  156 (330)
T ss_dssp             ECCSSC-CCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSCC--TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSC
T ss_pred             ECCCCc-CCeeCHHHhcCCCCCCEEECCCCc-CCccChhhc--ccccEEECCCC-cccccCHhHhcCCccccEEECCCCc
Confidence            888887 5554 6778888888888888877 667766553  68888888887 455554 345667888888888865


Q ss_pred             CcC--cccccccCCCCCceEEEeecCcCCC--CCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccc
Q 018478          185 RLE--ALPKGLHNLKSLQKLTIGKGGLEED--GLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVS  260 (355)
Q Consensus       185 ~~~--~~p~~l~~~~~L~~L~l~~~~i~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  260 (355)
                      ...  ..+..+..+++|++|+++.+.+...  ...++|+.|++++|.... .... .  +..+++|++|++++  +.+..
T Consensus       157 l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~-~~~~-~--~~~l~~L~~L~Ls~--n~l~~  230 (330)
T 1xku_A          157 LKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITK-VDAA-S--LKGLNNLAKLGLSF--NSISA  230 (330)
T ss_dssp             CCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCE-ECTG-G--GTTCTTCCEEECCS--SCCCE
T ss_pred             CCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCc-cCHH-H--hcCCCCCCEEECCC--CcCce
Confidence            421  3456778888899988884444332  234799999999987443 3222 1  77889999999998  55666


Q ss_pred             cCccccccCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEeeCCCCCCcccCCCCC--------CCCccEEEecC
Q 018478          261 FPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPEKGL--------PSSLLELWIGG  332 (355)
Q Consensus       261 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~--------~~~L~~L~l~~  332 (355)
                      ++...+      ..+++|++|++++ +.++.+|.++..+++|++|++++| +++.++...+        .++++.+++.+
T Consensus       231 ~~~~~~------~~l~~L~~L~L~~-N~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~  302 (330)
T 1xku_A          231 VDNGSL------ANTPHLRELHLNN-NKLVKVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFS  302 (330)
T ss_dssp             ECTTTG------GGSTTCCEEECCS-SCCSSCCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCS
T ss_pred             eChhhc------cCCCCCCEEECCC-CcCccCChhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeec
Confidence            654322      4678999999998 588899988889999999999998 7888876544        36788999998


Q ss_pred             Cch
Q 018478          333 CPL  335 (355)
Q Consensus       333 c~~  335 (355)
                      +|-
T Consensus       303 N~~  305 (330)
T 1xku_A          303 NPV  305 (330)
T ss_dssp             SSS
T ss_pred             Ccc
Confidence            875

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.88  E-value=1.6e-21  Score=183.14  Aligned_cols=278  Identities=16%  Similarity=0.139  Sum_probs=136.6

Q ss_pred             CCCCccEEeecccccCcccccCccCCCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhcc
Q 018478            4 TNSSLEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFS   83 (355)
Q Consensus         4 ~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~   83 (355)
                      ++++|++|+++++ .++.++.....++|++|+++++ .++.++.              ..+++|++|+++++ .++.+  
T Consensus        40 ~l~~L~~L~Ls~n-~l~~~~~l~~l~~L~~L~Ls~n-~l~~~~~--------------~~l~~L~~L~Ls~N-~l~~~--  100 (457)
T 3bz5_A           40 QLATLTSLDCHNS-SITDMTGIEKLTGLTKLICTSN-NITTLDL--------------SQNTNLTYLACDSN-KLTNL--  100 (457)
T ss_dssp             HHTTCCEEECCSS-CCCCCTTGGGCTTCSEEECCSS-CCSCCCC--------------TTCTTCSEEECCSS-CCSCC--
T ss_pred             HcCCCCEEEccCC-CcccChhhcccCCCCEEEccCC-cCCeEcc--------------ccCCCCCEEECcCC-CCcee--
Confidence            3688899999865 5666653333488999999984 4676652              22667777777664 23333  


Q ss_pred             ccccchhccccccCCCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCc
Q 018478           84 KNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLE  163 (355)
Q Consensus        84 ~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~  163 (355)
                                 +. ..+++|+.|++++|. +..++  ++.+++|++|++++|. ++.++  ++.+++|+.|++++|..+.
T Consensus       101 -----------~~-~~l~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~  162 (457)
T 3bz5_A          101 -----------DV-TPLTKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKIT  162 (457)
T ss_dssp             -----------CC-TTCTTCCEEECCSSC-CSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCC
T ss_pred             -----------ec-CCCCcCCEEECCCCc-CCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCccc
Confidence                       31 223455555555554 44342  4445555555555544 33332  4444555555555443333


Q ss_pred             CCCCCCCCCCCcceEEEccccCcCcccccccCCCCCceEEEeecCcCC--CCCCCCccEEEecCCcchhhhhhhhcccCC
Q 018478          164 SFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEE--DGLPTNLHSLDIRGNMEIWKSMIEWGQGFH  241 (355)
Q Consensus       164 ~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  241 (355)
                      .+  .+..+++|+.|++++| .++.+|  +..+++|+.|+++.+.+..  ...+++|+.|++++|.... ++      +.
T Consensus       163 ~~--~~~~l~~L~~L~ls~n-~l~~l~--l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~-ip------~~  230 (457)
T 3bz5_A          163 KL--DVTPQTQLTTLDCSFN-KITELD--VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTE-ID------VT  230 (457)
T ss_dssp             CC--CCTTCTTCCEEECCSS-CCCCCC--CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSC-CC------CT
T ss_pred             cc--ccccCCcCCEEECCCC-ccceec--cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccc-cC------cc
Confidence            33  1333444555555443 233332  3444444444444222221  2223444444444443211 11      23


Q ss_pred             CCCccceeEecccCCcccccCcccccc-----------------------CCCCCCCCccceEEeccCCCccccccc---
Q 018478          242 RFSSLRELRIEGCDDDMVSFPPEDIRM-----------------------GTTLPLPTSLTSLAIFSFPNLERLSSS---  295 (355)
Q Consensus       242 ~l~~L~~L~l~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~L~~L~l~~~~~l~~l~~~---  295 (355)
                      .+++|++|++++  +.++.++...+.-                       ......+++|+.|++++|..+..+|..   
T Consensus       231 ~l~~L~~L~l~~--N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~  308 (457)
T 3bz5_A          231 PLTQLTYFDCSV--NPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAG  308 (457)
T ss_dssp             TCTTCSEEECCS--SCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCC
T ss_pred             ccCCCCEEEeeC--CcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCc
Confidence            334444444443  2222222100000                       000023466777777776555444421   


Q ss_pred             -----CCCCCCccEEeeCCCCCCcccCCCCCCCCccEEEecCCc
Q 018478          296 -----IVDLQNLTSLYLVGCPKLKYFPEKGLPSSLLELWIGGCP  334 (355)
Q Consensus       296 -----~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~  334 (355)
                           +..+++|++|++++| +++.++ -+-+++|++|+++++.
T Consensus       309 L~~L~l~~~~~L~~L~L~~N-~l~~l~-l~~l~~L~~L~l~~N~  350 (457)
T 3bz5_A          309 ITELDLSQNPKLVYLYLNNT-ELTELD-VSHNTKLKSLSCVNAH  350 (457)
T ss_dssp             CSCCCCTTCTTCCEEECTTC-CCSCCC-CTTCTTCSEEECCSSC
T ss_pred             ceEechhhcccCCEEECCCC-cccccc-cccCCcCcEEECCCCC
Confidence                 345566777777766 566654 2236788888877653

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.88  E-value=4.4e-21  Score=181.00  Aligned_cols=286  Identities=16%  Similarity=0.158  Sum_probs=199.5

Q ss_pred             CCCCCccEEeecccccCcccccCccCCCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchh-
Q 018478            3 DTNSSLEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSI-   81 (355)
Q Consensus         3 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-   81 (355)
                      .++++|++|+++++ .++.++...-.++|++|++++| .+..++..             ..+++|++|+++++. +..+ 
T Consensus        87 ~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-------------~~l~~L~~L~l~~n~-l~~~~  150 (466)
T 1o6v_A           87 KNLTKLVDILMNNN-QIADITPLANLTNLTGLTLFNN-QITDIDPL-------------KNLTNLNRLELSSNT-ISDIS  150 (466)
T ss_dssp             TTCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCCCGGG-------------TTCTTCSEEEEEEEE-ECCCG
T ss_pred             hccccCCEEECCCC-ccccChhhcCCCCCCEEECCCC-CCCCChHH-------------cCCCCCCEEECCCCc-cCCCh
Confidence            45788999999865 4555554333388899998885 46665542             236666666665432 1111 


Q ss_pred             -----------ccccccchhccccccCCCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCC
Q 018478           82 -----------FSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQ  150 (355)
Q Consensus        82 -----------~~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~  150 (355)
                                 ...+...+.    +....+++|+.|++++|. +..++ .+..+++|++|++++|. +...+. ++.+++
T Consensus       151 ~~~~l~~L~~L~l~~~~~~~----~~~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~  222 (466)
T 1o6v_A          151 ALSGLTSLQQLSFGNQVTDL----KPLANLTTLERLDISSNK-VSDIS-VLAKLTNLESLIATNNQ-ISDITP-LGILTN  222 (466)
T ss_dssp             GGTTCTTCSEEEEEESCCCC----GGGTTCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSC-CCCCGG-GGGCTT
T ss_pred             hhccCCcccEeecCCcccCc----hhhccCCCCCEEECcCCc-CCCCh-hhccCCCCCEEEecCCc-cccccc-ccccCC
Confidence                       000111111    223445789999999887 66654 36778999999999887 544433 677899


Q ss_pred             CceEeccccCCCcCCCCCCCCCCCcceEEEccccCcCcccccccCCCCCceEEEeecCc---CCCCCCCCccEEEecCCc
Q 018478          151 LQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGL---EEDGLPTNLHSLDIRGNM  227 (355)
Q Consensus       151 L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i---~~~~~~~~L~~L~l~~~~  227 (355)
                      |+.|++++| .+..++ .+..+++|+.|++++|. ++..+. +..+++|++|+++.+.+   +....+++|+.|++++|.
T Consensus       223 L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~  298 (466)
T 1o6v_A          223 LDELSLNGN-QLKDIG-TLASLTNLTDLDLANNQ-ISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQ  298 (466)
T ss_dssp             CCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSC
T ss_pred             CCEEECCCC-Ccccch-hhhcCCCCCEEECCCCc-cccchh-hhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCc
Confidence            999999987 455553 45668899999999965 444443 88899999999984433   335567899999999987


Q ss_pred             chhhhhhhhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEee
Q 018478          228 EIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYL  307 (355)
Q Consensus       228 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l  307 (355)
                      ... .+.     +..+++|++|++++  +.+..+++ .       ..+++|++|++++| .++.++ .+..+++|++|++
T Consensus       299 l~~-~~~-----~~~l~~L~~L~L~~--n~l~~~~~-~-------~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l  360 (466)
T 1o6v_A          299 LED-ISP-----ISNLKNLTYLTLYF--NNISDISP-V-------SSLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSA  360 (466)
T ss_dssp             CSC-CGG-----GGGCTTCSEEECCS--SCCSCCGG-G-------GGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEEC
T ss_pred             ccC-chh-----hcCCCCCCEEECcC--CcCCCchh-h-------ccCccCCEeECCCC-ccCCch-hhccCCCCCEEeC
Confidence            443 332     66789999999998  35555544 2       36789999999984 677664 5788999999999


Q ss_pred             CCCCCCcccCCCCCCCCccEEEecCCch
Q 018478          308 VGCPKLKYFPEKGLPSSLLELWIGGCPL  335 (355)
Q Consensus       308 ~~~~~l~~~~~~~~~~~L~~L~l~~c~~  335 (355)
                      ++| +++.++....+++|++|++.+|+.
T Consensus       361 ~~n-~l~~~~~~~~l~~L~~L~l~~n~~  387 (466)
T 1o6v_A          361 GHN-QISDLTPLANLTRITQLGLNDQAW  387 (466)
T ss_dssp             CSS-CCCBCGGGTTCTTCCEEECCCEEE
T ss_pred             CCC-ccCccchhhcCCCCCEEeccCCcc
Confidence            998 677766544579999999998864

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.88  E-value=4e-21  Score=193.84  Aligned_cols=84  Identities=17%  Similarity=0.171  Sum_probs=41.2

Q ss_pred             CCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccc-cccCCCCCCccEEeeCCCCCCcccCC
Q 018478          240 FHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERL-SSSIVDLQNLTSLYLVGCPKLKYFPE  318 (355)
Q Consensus       240 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~  318 (355)
                      +..+++|++|++++  +.+..+++..+      ..+++|++|++++ +.++.+ +..+..+++|++|++++| +++.++.
T Consensus       286 ~~~l~~L~~L~L~~--n~i~~~~~~~~------~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~  355 (844)
T 3j0a_A          286 FETLKDLKVLNLAY--NKINKIADEAF------YGLDNLQVLNLSY-NLLGELYSSNFYGLPKVAYIDLQKN-HIAIIQD  355 (844)
T ss_dssp             SSSCCCCCEEEEES--CCCCEECTTTT------TTCSSCCEEEEES-CCCSCCCSCSCSSCTTCCEEECCSC-CCCCCCS
T ss_pred             hhcCCCCCEEECCC--CcCCCCChHHh------cCCCCCCEEECCC-CCCCccCHHHhcCCCCCCEEECCCC-CCCccCh
Confidence            44555555555555  33333322211      3445556666655 334333 334455555666666555 4555544


Q ss_pred             CCC--CCCccEEEecCC
Q 018478          319 KGL--PSSLLELWIGGC  333 (355)
Q Consensus       319 ~~~--~~~L~~L~l~~c  333 (355)
                      ..+  +++|++|++++|
T Consensus       356 ~~~~~l~~L~~L~Ls~N  372 (844)
T 3j0a_A          356 QTFKFLEKLQTLDLRDN  372 (844)
T ss_dssp             SCSCSCCCCCEEEEETC
T ss_pred             hhhcCCCCCCEEECCCC
Confidence            332  455555555554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.88  E-value=7.9e-22  Score=177.47  Aligned_cols=218  Identities=22%  Similarity=0.330  Sum_probs=184.0

Q ss_pred             cccccEEEecCCCccchhccccccchhccccccC-CCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCccc
Q 018478           64 SYLLEELCISSCRSLTSIFSKNELSATLESLEVG-NLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILP  142 (355)
Q Consensus        64 ~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  142 (355)
                      ..+++.|+++++ .++.+             +.. ..+++|++|++++|. +..+|..++.+++|++|++++|. +..+|
T Consensus        80 ~~~l~~L~L~~n-~l~~l-------------p~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp  143 (328)
T 4fcg_A           80 QPGRVALELRSV-PLPQF-------------PDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNP-LRALP  143 (328)
T ss_dssp             STTCCEEEEESS-CCSSC-------------CSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCC-CCCCC
T ss_pred             ccceeEEEccCC-Cchhc-------------ChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCc-cccCc
Confidence            478999999875 45555             433 346899999999988 66889889999999999999987 66889


Q ss_pred             ccccCCCCCceEeccccCCCcCCCCCCCC---------CCCcceEEEccccCcCcccccccCCCCCceEEEeecCcCC--
Q 018478          143 SGLHNLRQLQEISIEGCGNLESFPEGGLP---------CAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEE--  211 (355)
Q Consensus       143 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~---------~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~--  211 (355)
                      ..++.+++|+.|++++|.....+|..+..         +++|+.|++++| .++.+|..++.+++|++|+++.+.+..  
T Consensus       144 ~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~l~~l~  222 (328)
T 4fcg_A          144 ASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSPLSALG  222 (328)
T ss_dssp             GGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSCCCCCC
T ss_pred             HHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCCCCcCc
Confidence            89999999999999998888888877654         899999999996 566889999999999999999444432  


Q ss_pred             --CCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCc
Q 018478          212 --DGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNL  289 (355)
Q Consensus       212 --~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  289 (355)
                        ...+++|+.|++++|......+..    +..+++|++|++++ |.....+|..+       ..+++|++|++++|+.+
T Consensus       223 ~~l~~l~~L~~L~Ls~n~~~~~~p~~----~~~l~~L~~L~L~~-n~~~~~~p~~~-------~~l~~L~~L~L~~n~~~  290 (328)
T 4fcg_A          223 PAIHHLPKLEELDLRGCTALRNYPPI----FGGRAPLKRLILKD-CSNLLTLPLDI-------HRLTQLEKLDLRGCVNL  290 (328)
T ss_dssp             GGGGGCTTCCEEECTTCTTCCBCCCC----TTCCCCCCEEECTT-CTTCCBCCTTG-------GGCTTCCEEECTTCTTC
T ss_pred             hhhccCCCCCEEECcCCcchhhhHHH----hcCCCCCCEEECCC-CCchhhcchhh-------hcCCCCCEEeCCCCCch
Confidence              345689999999999876655432    78899999999999 78888888776       57889999999999999


Q ss_pred             ccccccCCCCCCccEEeeCCC
Q 018478          290 ERLSSSIVDLQNLTSLYLVGC  310 (355)
Q Consensus       290 ~~l~~~~~~~~~L~~L~l~~~  310 (355)
                      ..+|.++..+++|+.+.+..+
T Consensus       291 ~~iP~~l~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          291 SRLPSLIAQLPANCIILVPPH  311 (328)
T ss_dssp             CCCCGGGGGSCTTCEEECCGG
T ss_pred             hhccHHHhhccCceEEeCCHH
Confidence            999999999999999998764

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.87  E-value=4.1e-21  Score=177.06  Aligned_cols=257  Identities=16%  Similarity=0.142  Sum_probs=187.6

Q ss_pred             CCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccccchhcccccc--CCCCCcccEE
Q 018478           29 RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEV--GNLPPSLKSL  106 (355)
Q Consensus        29 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~--~~~~~~L~~L  106 (355)
                      ++++.|++.++ .++.+|...           +..+++|++|+++++. ++.+             +.  ...+++|++|
T Consensus        45 ~~l~~l~l~~~-~l~~l~~~~-----------~~~l~~L~~L~L~~n~-i~~~-------------~~~~~~~l~~L~~L   98 (390)
T 3o6n_A           45 NNQKIVTFKNS-TMRKLPAAL-----------LDSFRQVELLNLNDLQ-IEEI-------------DTYAFAYAHTIQKL   98 (390)
T ss_dssp             CCCSEEEEESC-EESEECTHH-----------HHHCCCCSEEECTTSC-CCEE-------------CTTTTTTCTTCCEE
T ss_pred             CCceEEEecCC-chhhCChhH-----------hcccccCcEEECCCCc-cccc-------------ChhhccCCCCcCEE
Confidence            88999999994 588888764           5668999999999864 4554             32  2456899999


Q ss_pred             EEccCcchhch-hhhccCCCCCcEEEeeccCCcCccccc-ccCCCCCceEeccccCCCcCC-CCCCCCCCCcceEEEccc
Q 018478          107 RVQGCSKLESI-AETLDNSTSLETIHIFYCENMKILPSG-LHNLRQLQEISIEGCGNLESF-PEGGLPCAKLKEVVIRWC  183 (355)
Q Consensus       107 ~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~  183 (355)
                      ++++|. +..+ |..++.+++|++|++++|. +..+|.. +..+++|+.|++++| .+..+ +..+..+++|+.|++++|
T Consensus        99 ~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n  175 (390)
T 3o6n_A           99 YMGFNA-IRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSN  175 (390)
T ss_dssp             ECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSS
T ss_pred             ECCCCC-CCcCCHHHhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCC
Confidence            999998 6655 4567899999999999987 6777765 588999999999998 45555 456788999999999996


Q ss_pred             cCcCcccccccCCCCCceEEEeecCcCCCC---------------------CCCCccEEEecCCcchhhhhhhhcccCCC
Q 018478          184 GRLEALPKGLHNLKSLQKLTIGKGGLEEDG---------------------LPTNLHSLDIRGNMEIWKSMIEWGQGFHR  242 (355)
Q Consensus       184 ~~~~~~p~~l~~~~~L~~L~l~~~~i~~~~---------------------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  242 (355)
                      . ++.+  .+..+++|+.|+++.+.+....                     .+++|+.|++++|.... ..   .  +..
T Consensus       176 ~-l~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~-~~---~--l~~  246 (390)
T 3o6n_A          176 R-LTHV--DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD-TA---W--LLN  246 (390)
T ss_dssp             C-CSBC--CGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCC-CG---G--GGG
T ss_pred             c-CCcc--ccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcc-cH---H--HcC
Confidence            4 4443  3455666666666533333222                     23566677777665332 22   1  667


Q ss_pred             CCccceeEecccCCccccc-CccccccCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEeeCCCCCCcccCCCC-
Q 018478          243 FSSLRELRIEGCDDDMVSF-PPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPEKG-  320 (355)
Q Consensus       243 l~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-  320 (355)
                      +++|++|++++  +.+..+ +..+       ..+++|++|++++ +.++.++..+..+++|++|++++| +++.++... 
T Consensus       247 l~~L~~L~Ls~--n~l~~~~~~~~-------~~l~~L~~L~L~~-n~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~  315 (390)
T 3o6n_A          247 YPGLVEVDLSY--NELEKIMYHPF-------VKMQRLERLYISN-NRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQP  315 (390)
T ss_dssp             CTTCSEEECCS--SCCCEEESGGG-------TTCSSCCEEECCS-SCCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHH
T ss_pred             CCCccEEECCC--CcCCCcChhHc-------cccccCCEEECCC-CcCcccCcccCCCCCCCEEECCCC-cceecCcccc
Confidence            78888888888  455544 3333       5677888999988 677888877778889999999888 787776531 


Q ss_pred             CCCCccEEEecCCc
Q 018478          321 LPSSLLELWIGGCP  334 (355)
Q Consensus       321 ~~~~L~~L~l~~c~  334 (355)
                      .+++|++|++.+|+
T Consensus       316 ~l~~L~~L~L~~N~  329 (390)
T 3o6n_A          316 QFDRLENLYLDHNS  329 (390)
T ss_dssp             HHTTCSEEECCSSC
T ss_pred             ccCcCCEEECCCCc
Confidence            26888899888876

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.87  E-value=1.9e-21  Score=187.85  Aligned_cols=111  Identities=23%  Similarity=0.245  Sum_probs=56.9

Q ss_pred             CccEEeecccccCcccccCccC--CCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchh---
Q 018478            7 SLEILEIWSCRSLTYLAAVQLP--RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSI---   81 (355)
Q Consensus         7 ~L~~L~l~~~~~l~~l~~~~~~--~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~---   81 (355)
                      ++++|+++++ .++.++...+.  ++|++|++++| .+..++...           +..+++|++|+++++. ++.+   
T Consensus        29 ~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~-----------~~~l~~L~~L~L~~n~-l~~~~~~   94 (570)
T 2z63_A           29 STKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGA-----------YQSLSHLSTLILTGNP-IQSLALG   94 (570)
T ss_dssp             SCCEEECCSC-CCCEECTTTTTTCSSCCEEECTTC-CCCEECTTT-----------TTTCTTCCEEECTTCC-CCEECTT
T ss_pred             cccEEEccCC-ccCccChhHhhCCCCceEEECCCC-cCCccCccc-----------ccCchhCCEEeCcCCc-CCccCHh
Confidence            5777777743 46666544443  77777777774 355554332           2334455555554431 1111   


Q ss_pred             ------------ccccccchhcccccc--CCCCCcccEEEEccCcchhc--hhhhccCCCCCcEEEeeccC
Q 018478           82 ------------FSKNELSATLESLEV--GNLPPSLKSLRVQGCSKLES--IAETLDNSTSLETIHIFYCE  136 (355)
Q Consensus        82 ------------~~~n~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~  136 (355)
                                  +++|.+...    +.  ...+++|++|++++|. +..  +|..++++++|++|++++|.
T Consensus        95 ~~~~l~~L~~L~L~~n~l~~l----~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~~n~  160 (570)
T 2z63_A           95 AFSGLSSLQKLVAVETNLASL----ENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNK  160 (570)
T ss_dssp             TTTTCTTCCEEECTTSCCCCS----TTCSCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECTTSC
T ss_pred             hhcCccccccccccccccccC----CCccccccccccEEecCCCc-cceecChhhhcccCCCCEEeCcCCc
Confidence                        111111111    11  2334566666666665 332  45666666666666666665

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.87  E-value=4.6e-21  Score=172.81  Aligned_cols=259  Identities=16%  Similarity=0.163  Sum_probs=183.5

Q ss_pred             CCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccccchhcccccc--CCCCCcccEE
Q 018478           29 RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEV--GNLPPSLKSL  106 (355)
Q Consensus        29 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~--~~~~~~L~~L  106 (355)
                      .+++.++++++ .++.+|...              .++|+.|+++++. ++.+             +.  ...+++|++|
T Consensus        33 c~l~~l~~~~~-~l~~ip~~~--------------~~~l~~L~l~~n~-i~~~-------------~~~~~~~l~~L~~L   83 (332)
T 2ft3_A           33 CHLRVVQCSDL-GLKAVPKEI--------------SPDTTLLDLQNND-ISEL-------------RKDDFKGLQHLYAL   83 (332)
T ss_dssp             EETTEEECCSS-CCSSCCSCC--------------CTTCCEEECCSSC-CCEE-------------CTTTTTTCTTCCEE
T ss_pred             ccCCEEECCCC-CccccCCCC--------------CCCCeEEECCCCc-CCcc-------------CHhHhhCCCCCcEE
Confidence            35788888874 477777765              5678888888753 4444             22  2445788888


Q ss_pred             EEccCcchhch-hhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCC-CCCCCCCcceEEEcccc
Q 018478          107 RVQGCSKLESI-AETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPE-GGLPCAKLKEVVIRWCG  184 (355)
Q Consensus       107 ~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~  184 (355)
                      ++++|. +..+ |..+..+++|++|++++|. +..+|..+.  ++|+.|++++| .+..++. .+..+++|+.|++++|.
T Consensus        84 ~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~  158 (332)
T 2ft3_A           84 VLVNNK-ISKIHEKAFSPLRKLQKLYISKNH-LVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNP  158 (332)
T ss_dssp             ECCSSC-CCEECGGGSTTCTTCCEEECCSSC-CCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCC
T ss_pred             ECCCCc-cCccCHhHhhCcCCCCEEECCCCc-CCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCc
Confidence            888887 5544 6677888888888888876 667766554  78888888886 5566654 36668888888888865


Q ss_pred             Cc--CcccccccCCCCCceEEEeecCcCCC--CCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccc
Q 018478          185 RL--EALPKGLHNLKSLQKLTIGKGGLEED--GLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVS  260 (355)
Q Consensus       185 ~~--~~~p~~l~~~~~L~~L~l~~~~i~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  260 (355)
                      ..  ...+..+..+ +|++|+++.+.+...  ..+++|+.|++++|.... .... .  +..+++|++|++++  +.+..
T Consensus       159 l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~-~~~~-~--l~~l~~L~~L~L~~--N~l~~  231 (332)
T 2ft3_A          159 LENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQA-IELE-D--LLRYSKLYRLGLGH--NQIRM  231 (332)
T ss_dssp             CBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCC-CCTT-S--STTCTTCSCCBCCS--SCCCC
T ss_pred             cccCCCCcccccCC-ccCEEECcCCCCCccCccccCCCCEEECCCCcCCc-cCHH-H--hcCCCCCCEEECCC--CcCCc
Confidence            32  1345566666 888888874443332  234788899998886443 2221 1  67888999999988  56666


Q ss_pred             cCccccccCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEeeCCCCCCcccCCCCC--------CCCccEEEecC
Q 018478          261 FPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPEKGL--------PSSLLELWIGG  332 (355)
Q Consensus       261 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~--------~~~L~~L~l~~  332 (355)
                      ++...+      ..+++|++|++++ +.++.+|..+..+++|++|++++| +++.++...+        .++|+.|++.+
T Consensus       232 ~~~~~~------~~l~~L~~L~L~~-N~l~~lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~  303 (332)
T 2ft3_A          232 IENGSL------SFLPTLRELHLDN-NKLSRVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFN  303 (332)
T ss_dssp             CCTTGG------GGCTTCCEEECCS-SCCCBCCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCS
T ss_pred             CChhHh------hCCCCCCEEECCC-CcCeecChhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeec
Confidence            665332      4667899999998 578888888888999999999988 7888876433        35688999998


Q ss_pred             Cchh
Q 018478          333 CPLI  336 (355)
Q Consensus       333 c~~l  336 (355)
                      ++..
T Consensus       304 N~~~  307 (332)
T 2ft3_A          304 NPVP  307 (332)
T ss_dssp             SSSC
T ss_pred             Cccc
Confidence            8753

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.87  E-value=9.4e-21  Score=170.66  Aligned_cols=280  Identities=16%  Similarity=0.162  Sum_probs=196.1

Q ss_pred             CccEEeecccccCcccccCccCCCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccc
Q 018478            7 SLEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNE   86 (355)
Q Consensus         7 ~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~   86 (355)
                      +++.++++++ .++.+| ..++++|++|+++++ .++.++...           +..+++|++|+++++. ++.+     
T Consensus        32 ~l~~l~~~~~-~l~~lp-~~~~~~l~~L~L~~n-~i~~~~~~~-----------~~~l~~L~~L~L~~n~-l~~~-----   91 (330)
T 1xku_A           32 HLRVVQCSDL-GLEKVP-KDLPPDTALLDLQNN-KITEIKDGD-----------FKNLKNLHTLILINNK-ISKI-----   91 (330)
T ss_dssp             ETTEEECTTS-CCCSCC-CSCCTTCCEEECCSS-CCCCBCTTT-----------TTTCTTCCEEECCSSC-CCCB-----
T ss_pred             CCeEEEecCC-CccccC-ccCCCCCeEEECCCC-cCCEeChhh-----------hccCCCCCEEECCCCc-CCee-----
Confidence            6888888754 567776 445689999999994 577776543           4668899999998763 3333     


Q ss_pred             cchhccccccCCCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCC--cC
Q 018478           87 LSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNL--ES  164 (355)
Q Consensus        87 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l--~~  164 (355)
                          .+  .....+++|++|++++|. ++.+|..+.  ++|++|++++|......+..+..+++|+.|++++|..-  ..
T Consensus        92 ----~~--~~~~~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  162 (330)
T 1xku_A           92 ----SP--GAFAPLVKLERLYLSKNQ-LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI  162 (330)
T ss_dssp             ----CT--TTTTTCTTCCEEECCSSC-CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGB
T ss_pred             ----CH--HHhcCCCCCCEEECCCCc-CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCc
Confidence                00  112445789999999887 777776553  78999999988733333456788899999999887432  13


Q ss_pred             CCCCCCCCCCcceEEEccccCcCcccccccCCCCCceEEEeecCcC-----CCCCCCCccEEEecCCcchhhhhhhhccc
Q 018478          165 FPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLE-----EDGLPTNLHSLDIRGNMEIWKSMIEWGQG  239 (355)
Q Consensus       165 ~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~-----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  239 (355)
                      .+..+..+++|+.|++++| .++.+|..+.  ++|++|+++.+.+.     ....+++|+.|++++|.... .....   
T Consensus       163 ~~~~~~~l~~L~~L~l~~n-~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~---  235 (330)
T 1xku_A          163 ENGAFQGMKKLSYIRIADT-NITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA-VDNGS---  235 (330)
T ss_dssp             CTTGGGGCTTCCEEECCSS-CCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE-ECTTT---
T ss_pred             ChhhccCCCCcCEEECCCC-ccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce-eChhh---
Confidence            4556677889999999885 4566666554  78999998844433     23456889999999987443 22211   


Q ss_pred             CCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCccccccc-CC------CCCCccEEeeCCCCC
Q 018478          240 FHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSS-IV------DLQNLTSLYLVGCPK  312 (355)
Q Consensus       240 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~------~~~~L~~L~l~~~~~  312 (355)
                      +..+++|++|++++  +.+..+|..+       ...++|++|++++ +.++.++.. +.      ..+.++.|++.+|+ 
T Consensus       236 ~~~l~~L~~L~L~~--N~l~~lp~~l-------~~l~~L~~L~l~~-N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~-  304 (330)
T 1xku_A          236 LANTPHLRELHLNN--NKLVKVPGGL-------ADHKYIQVVYLHN-NNISAIGSNDFCPPGYNTKKASYSGVSLFSNP-  304 (330)
T ss_dssp             GGGSTTCCEEECCS--SCCSSCCTTT-------TTCSSCCEEECCS-SCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS-
T ss_pred             ccCCCCCCEEECCC--CcCccCChhh-------ccCCCcCEEECCC-CcCCccChhhcCCcccccccccccceEeecCc-
Confidence            66789999999998  5777888766       5678999999998 577777642 22      24788999999985 


Q ss_pred             Ccc--cCCCCC--CCCccEEEecCC
Q 018478          313 LKY--FPEKGL--PSSLLELWIGGC  333 (355)
Q Consensus       313 l~~--~~~~~~--~~~L~~L~l~~c  333 (355)
                      ++.  ++...+  +++++.++++++
T Consensus       305 ~~~~~i~~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          305 VQYWEIQPSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             SCGGGSCGGGGTTCCCGGGEEC---
T ss_pred             ccccccCccccccccceeEEEeccc
Confidence            543  333322  688888888765

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.87  E-value=7.3e-21  Score=171.53  Aligned_cols=278  Identities=18%  Similarity=0.217  Sum_probs=203.3

Q ss_pred             CccEEeecccccCcccccCccCCCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccc
Q 018478            7 SLEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNE   86 (355)
Q Consensus         7 ~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~   86 (355)
                      +++.++++++ .++.+| ..++++|++|+++++ .+..++...           +..+++|++|+++++. ++.+     
T Consensus        34 ~l~~l~~~~~-~l~~ip-~~~~~~l~~L~l~~n-~i~~~~~~~-----------~~~l~~L~~L~L~~n~-l~~~-----   93 (332)
T 2ft3_A           34 HLRVVQCSDL-GLKAVP-KEISPDTTLLDLQNN-DISELRKDD-----------FKGLQHLYALVLVNNK-ISKI-----   93 (332)
T ss_dssp             ETTEEECCSS-CCSSCC-SCCCTTCCEEECCSS-CCCEECTTT-----------TTTCTTCCEEECCSSC-CCEE-----
T ss_pred             cCCEEECCCC-CccccC-CCCCCCCeEEECCCC-cCCccCHhH-----------hhCCCCCcEEECCCCc-cCcc-----
Confidence            6899999864 577777 345689999999995 577766533           5669999999999864 4433     


Q ss_pred             cchhccccccCCCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCccc-ccccCCCCCceEeccccCCCc--
Q 018478           87 LSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILP-SGLHNLRQLQEISIEGCGNLE--  163 (355)
Q Consensus        87 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~--  163 (355)
                          .+  .....+++|++|++++|. +..+|..+.  ++|++|++++|. +..++ ..+..+++|+.|++++|. ++  
T Consensus        94 ----~~--~~~~~l~~L~~L~L~~n~-l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~-l~~~  162 (332)
T 2ft3_A           94 ----HE--KAFSPLRKLQKLYISKNH-LVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNP-LENS  162 (332)
T ss_dssp             ----CG--GGSTTCTTCCEEECCSSC-CCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCC-CBGG
T ss_pred             ----CH--hHhhCcCCCCEEECCCCc-CCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCc-cccC
Confidence                00  112455899999999987 778877654  899999999988 55555 458889999999999974 43  


Q ss_pred             -CCCCCCCCCCCcceEEEccccCcCcccccccCCCCCceEEEeecCcCC-----CCCCCCccEEEecCCcchhhhhhhhc
Q 018478          164 -SFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEE-----DGLPTNLHSLDIRGNMEIWKSMIEWG  237 (355)
Q Consensus       164 -~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~-----~~~~~~L~~L~l~~~~~~~~~~~~~~  237 (355)
                       ..+..+..+ +|+.|++++| .++.+|..+.  ++|++|+++.+.+..     ...+++|+.|++++|.... .+... 
T Consensus       163 ~~~~~~~~~l-~L~~L~l~~n-~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~-~~~~~-  236 (332)
T 2ft3_A          163 GFEPGAFDGL-KLNYLRISEA-KLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM-IENGS-  236 (332)
T ss_dssp             GSCTTSSCSC-CCSCCBCCSS-BCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCC-CCTTG-
T ss_pred             CCCcccccCC-ccCEEECcCC-CCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCc-CChhH-
Confidence             345556666 8999999996 4666776554  689999998444432     3456899999999987443 33222 


Q ss_pred             ccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCccccccc-CCC------CCCccEEeeCCC
Q 018478          238 QGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSS-IVD------LQNLTSLYLVGC  310 (355)
Q Consensus       238 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~------~~~L~~L~l~~~  310 (355)
                        +..+++|++|++++  +.+..+|..+       ...++|++|++++ +.++.++.. +..      .++|+.|++.+|
T Consensus       237 --~~~l~~L~~L~L~~--N~l~~lp~~l-------~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N  304 (332)
T 2ft3_A          237 --LSFLPTLRELHLDN--NKLSRVPAGL-------PDLKLLQVVYLHT-NNITKVGVNDFCPVGFGVKRAYYNGISLFNN  304 (332)
T ss_dssp             --GGGCTTCCEEECCS--SCCCBCCTTG-------GGCTTCCEEECCS-SCCCBCCTTSSSCSSCCSSSCCBSEEECCSS
T ss_pred             --hhCCCCCCEEECCC--CcCeecChhh-------hcCccCCEEECCC-CCCCccChhHccccccccccccccceEeecC
Confidence              67889999999998  5777888766       5778999999999 678877642 222      577999999999


Q ss_pred             CCCc--ccCCCCC--CCCccEEEecCCc
Q 018478          311 PKLK--YFPEKGL--PSSLLELWIGGCP  334 (355)
Q Consensus       311 ~~l~--~~~~~~~--~~~L~~L~l~~c~  334 (355)
                      + +.  .++...+  +++|+.+++.++.
T Consensus       305 ~-~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          305 P-VPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             S-SCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             c-ccccccCcccccccchhhhhhccccc
Confidence            5 55  3443333  6899999998774

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.87  E-value=3.4e-20  Score=179.01  Aligned_cols=82  Identities=20%  Similarity=0.138  Sum_probs=47.5

Q ss_pred             CCCCCccceeEecccCCcccc-cCccccccCCCCCCCCccceEEeccCCCcc-cccccCCCC-CCccEEeeCCCCCCccc
Q 018478          240 FHRFSSLRELRIEGCDDDMVS-FPPEDIRMGTTLPLPTSLTSLAIFSFPNLE-RLSSSIVDL-QNLTSLYLVGCPKLKYF  316 (355)
Q Consensus       240 ~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~l~~~~~~~-~~L~~L~l~~~~~l~~~  316 (355)
                      +..+++|++|++++  +.+.. ++...+      ..+++|++|+++++ .++ .++   ..+ ++|++|++++| +++.+
T Consensus       399 ~~~l~~L~~L~l~~--N~l~~~~~~~~~------~~l~~L~~L~l~~n-~l~~~~~---~~l~~~L~~L~L~~N-~l~~i  465 (562)
T 3a79_B          399 TKNMSSLETLDVSL--NSLNSHAYDRTC------AWAESILVLNLSSN-MLTGSVF---RCLPPKVKVLDLHNN-RIMSI  465 (562)
T ss_dssp             TTTCTTCCEEECTT--SCCBSCCSSCCC------CCCTTCCEEECCSS-CCCGGGG---SSCCTTCSEEECCSS-CCCCC
T ss_pred             hcCCCCCCEEECCC--CcCCCccChhhh------cCcccCCEEECCCC-CCCcchh---hhhcCcCCEEECCCC-cCccc
Confidence            44555555555555  23333 443321      34456666666663 332 333   233 57888888877 77777


Q ss_pred             CCCCC-CCCccEEEecCCc
Q 018478          317 PEKGL-PSSLLELWIGGCP  334 (355)
Q Consensus       317 ~~~~~-~~~L~~L~l~~c~  334 (355)
                      |.... +++|++|+++++.
T Consensus       466 p~~~~~l~~L~~L~L~~N~  484 (562)
T 3a79_B          466 PKDVTHLQALQELNVASNQ  484 (562)
T ss_dssp             CTTTTSSCCCSEEECCSSC
T ss_pred             ChhhcCCCCCCEEECCCCC
Confidence            76433 6788888888764

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.86  E-value=2.5e-20  Score=175.04  Aligned_cols=270  Identities=17%  Similarity=0.189  Sum_probs=155.5

Q ss_pred             CCCCCccEEeecccccCcccccCccCCCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchh-
Q 018478            3 DTNSSLEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSI-   81 (355)
Q Consensus         3 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-   81 (355)
                      +.+++|++|+++++ .++.++ ..-.++|++|+++++ .+..++.              ..+++|++|+++++ .++.+ 
T Consensus        61 ~~l~~L~~L~Ls~n-~l~~~~-~~~l~~L~~L~Ls~N-~l~~~~~--------------~~l~~L~~L~L~~N-~l~~l~  122 (457)
T 3bz5_A           61 EKLTGLTKLICTSN-NITTLD-LSQNTNLTYLACDSN-KLTNLDV--------------TPLTKLTYLNCDTN-KLTKLD  122 (457)
T ss_dssp             GGCTTCSEEECCSS-CCSCCC-CTTCTTCSEEECCSS-CCSCCCC--------------TTCTTCCEEECCSS-CCSCCC
T ss_pred             cccCCCCEEEccCC-cCCeEc-cccCCCCCEEECcCC-CCceeec--------------CCCCcCCEEECCCC-cCCeec
Confidence            45788999999865 566664 233388999999984 4666542              22666777777654 22322 


Q ss_pred             -----------ccccccchhccccccCCCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCC
Q 018478           82 -----------FSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQ  150 (355)
Q Consensus        82 -----------~~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~  150 (355)
                                 +++|.+.+.    +. ..+++|+.|++++|..+..+  .++.+++|++|++++|. ++.++  +..+++
T Consensus       123 ~~~l~~L~~L~l~~N~l~~l----~l-~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~-l~~l~--l~~l~~  192 (457)
T 3bz5_A          123 VSQNPLLTYLNCARNTLTEI----DV-SHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK-ITELD--VSQNKL  192 (457)
T ss_dssp             CTTCTTCCEEECTTSCCSCC----CC-TTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC-CCCCC--CTTCTT
T ss_pred             CCCCCcCCEEECCCCcccee----cc-ccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc-cceec--cccCCC
Confidence                       222222221    21 22345555555555434433  24455666666666654 44443  555666


Q ss_pred             CceEeccccCCCcCCCCCCCCCCCcceEEEccccCcCcccccccCCCCCceEEEeecCcCC--CCCCCCccE--------
Q 018478          151 LQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEE--DGLPTNLHS--------  220 (355)
Q Consensus       151 L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~--~~~~~~L~~--------  220 (355)
                      |+.|++++| .++.++  +..+++|+.|++++| .++.+|  ++.+++|+.|+++.+.+..  .+.+++|+.        
T Consensus       193 L~~L~l~~N-~l~~~~--l~~l~~L~~L~Ls~N-~l~~ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L  266 (457)
T 3bz5_A          193 LNRLNCDTN-NITKLD--LNQNIQLTFLDCSSN-KLTEID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDL  266 (457)
T ss_dssp             CCEEECCSS-CCSCCC--CTTCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCC
T ss_pred             CCEEECcCC-cCCeec--cccCCCCCEEECcCC-cccccC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCC
Confidence            666666665 344442  455667777777764 344454  6667777777776333332  122334443        


Q ss_pred             --EEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCccccccC-CCCCCCCccceEEeccCCCcccccccCC
Q 018478          221 --LDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMG-TTLPLPTSLTSLAIFSFPNLERLSSSIV  297 (355)
Q Consensus       221 --L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~l~~~~~  297 (355)
                        |++++|......    +  +..+++|+.|++++ |...+.+|....... ......++|++|++++ +.++.++  +.
T Consensus       267 ~~L~l~~n~~~~~~----~--~~~l~~L~~L~Ls~-n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~-N~l~~l~--l~  336 (457)
T 3bz5_A          267 LEIDLTHNTQLIYF----Q--AEGCRKIKELDVTH-NTQLYLLDCQAAGITELDLSQNPKLVYLYLNN-TELTELD--VS  336 (457)
T ss_dssp             SCCCCTTCTTCCEE----E--CTTCTTCCCCCCTT-CTTCCEEECTTCCCSCCCCTTCTTCCEEECTT-CCCSCCC--CT
T ss_pred             CEEECCCCccCCcc----c--ccccccCCEEECCC-CcccceeccCCCcceEechhhcccCCEEECCC-Ccccccc--cc
Confidence              333443322222    2  45678899999988 665555543210000 0113446888888888 6777774  68


Q ss_pred             CCCCccEEeeCCCCCCcccC
Q 018478          298 DLQNLTSLYLVGCPKLKYFP  317 (355)
Q Consensus       298 ~~~~L~~L~l~~~~~l~~~~  317 (355)
                      .+++|+.|++++| +++.++
T Consensus       337 ~l~~L~~L~l~~N-~l~~l~  355 (457)
T 3bz5_A          337 HNTKLKSLSCVNA-HIQDFS  355 (457)
T ss_dssp             TCTTCSEEECCSS-CCCBCT
T ss_pred             cCCcCcEEECCCC-CCCCcc
Confidence            9999999999998 777654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.86  E-value=3.2e-20  Score=187.31  Aligned_cols=298  Identities=14%  Similarity=0.098  Sum_probs=151.5

Q ss_pred             CCccEEeecccccCcccccCccC--CCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCc------
Q 018478            6 SSLEILEIWSCRSLTYLAAVQLP--RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRS------   77 (355)
Q Consensus         6 ~~L~~L~l~~~~~l~~l~~~~~~--~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~------   77 (355)
                      +++++|+++++ .++.+.+..+.  ++|++|+++++..+..++...           +..+++|+.|+++++..      
T Consensus        24 ~~l~~LdLs~N-~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~-----------f~~L~~L~~L~Ls~N~l~~~~p~   91 (844)
T 3j0a_A           24 NTTERLLLSFN-YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEA-----------FRNLPNLRILDLGSSKIYFLHPD   91 (844)
T ss_dssp             TTCCEEEEESC-CCCEECSSSCSSCCSCSEEEECTTCCCCEECTTT-----------TSSCTTCCEEECTTCCCCEECTT
T ss_pred             CCcCEEECCCC-cCCccChhHCcccccCeEEeCCCCCCccccCHHH-----------hcCCCCCCEEECCCCcCcccCHh
Confidence            56778888754 56665544444  777777777764444443221           23344555555543321      


Q ss_pred             -------cchh-ccccccchhccccccCCCCCcccEEEEccCcchhch--hhhccCCCCCcEEEeeccCCcCcccccccC
Q 018478           78 -------LTSI-FSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESI--AETLDNSTSLETIHIFYCENMKILPSGLHN  147 (355)
Q Consensus        78 -------l~~~-~~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  147 (355)
                             ++.+ +++|.+.+..+.......+++|+.|++++|. +..+  +..++++++|++|++++|......+..+..
T Consensus        92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~  170 (844)
T 3j0a_A           92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP  170 (844)
T ss_dssp             SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH
T ss_pred             HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc
Confidence                   1111 2222222211100112344677777777776 4332  245667777777777776643334444444


Q ss_pred             C--CCCceEeccccCCCcCCCCCCCCCCC------cceEEEccccCcCcccccc--------------------------
Q 018478          148 L--RQLQEISIEGCGNLESFPEGGLPCAK------LKEVVIRWCGRLEALPKGL--------------------------  193 (355)
Q Consensus       148 l--~~L~~L~l~~~~~l~~~~~~~~~~~~------L~~L~l~~~~~~~~~p~~l--------------------------  193 (355)
                      +  ++|+.|++++|......|..+..+++      |+.|++++|......+..+                          
T Consensus       171 l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~  250 (844)
T 3j0a_A          171 LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH  250 (844)
T ss_dssp             HHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCS
T ss_pred             ccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccccc
Confidence            4  55666666555333333333333333      6677766653221111111                          


Q ss_pred             ----------cC--CCCCceEEEeecCcCC-----CCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCC
Q 018478          194 ----------HN--LKSLQKLTIGKGGLEE-----DGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDD  256 (355)
Q Consensus       194 ----------~~--~~~L~~L~l~~~~i~~-----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  256 (355)
                                ..  .++|++|+++.+.+..     ...+++|+.|++++|......+.  .  +.++++|++|++++  +
T Consensus       251 ~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~--~--~~~l~~L~~L~Ls~--N  324 (844)
T 3j0a_A          251 NIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE--A--FYGLDNLQVLNLSY--N  324 (844)
T ss_dssp             SSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTT--T--TTTCSSCCEEEEES--C
T ss_pred             ccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChH--H--hcCCCCCCEEECCC--C
Confidence                      11  1456666665322221     23456777777776653322221  1  56677777777776  3


Q ss_pred             cccccCccccccCCCCCCCCccceEEeccCCCcccccc-cCCCCCCccEEeeCCCCCCcccCCCCCCCCccEEEecCC
Q 018478          257 DMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSS-SIVDLQNLTSLYLVGCPKLKYFPEKGLPSSLLELWIGGC  333 (355)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c  333 (355)
                      .+..+....+      ..+++|+.|++++ +.+..++. .+..+++|++|++++| .++.++.   +++|++|++.++
T Consensus       325 ~l~~~~~~~~------~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~---~~~L~~L~l~~N  391 (844)
T 3j0a_A          325 LLGELYSSNF------YGLPKVAYIDLQK-NHIAIIQDQTFKFLEKLQTLDLRDN-ALTTIHF---IPSIPDIFLSGN  391 (844)
T ss_dssp             CCSCCCSCSC------SSCTTCCEEECCS-CCCCCCCSSCSCSCCCCCEEEEETC-CSCCCSS---CCSCSEEEEESC
T ss_pred             CCCccCHHHh------cCCCCCCEEECCC-CCCCccChhhhcCCCCCCEEECCCC-CCCcccC---CCCcchhccCCC
Confidence            4444432221      4556677777776 35555543 3566677777777766 4555442   355555555443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.86  E-value=2.9e-20  Score=183.42  Aligned_cols=185  Identities=16%  Similarity=0.095  Sum_probs=117.6

Q ss_pred             cccccCCCCCceEeccccCCCcCCC-CCCCCCCCcceEEEccccCcCcccccccCCCCCceEEEeecCc------C-CCC
Q 018478          142 PSGLHNLRQLQEISIEGCGNLESFP-EGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGL------E-EDG  213 (355)
Q Consensus       142 ~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i------~-~~~  213 (355)
                      +..+..+++|+.|++++|.....+| ..+..+++|+.|++++|......+..+..+++|++|+++.+.+      + ...
T Consensus       398 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~  477 (680)
T 1ziw_A          398 SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ  477 (680)
T ss_dssp             TTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT
T ss_pred             hhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccc
Confidence            3445556666666666653222333 3444556666666666543333344566666677776663222      2 134


Q ss_pred             CCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCccccc--cCCCCCCCCccceEEeccCCCccc
Q 018478          214 LPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIR--MGTTLPLPTSLTSLAIFSFPNLER  291 (355)
Q Consensus       214 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~l~~  291 (355)
                      .+++|+.|++++|... ..+...   +.++++|++|++++  +.+..++...+.  ........++|++|++++ +.++.
T Consensus       478 ~l~~L~~L~Ls~N~l~-~i~~~~---~~~l~~L~~L~Ls~--N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~-N~l~~  550 (680)
T 1ziw_A          478 PLRNLTILDLSNNNIA-NINDDM---LEGLEKLEILDLQH--NNLARLWKHANPGGPIYFLKGLSHLHILNLES-NGFDE  550 (680)
T ss_dssp             TCTTCCEEECCSSCCC-CCCTTT---TTTCTTCCEEECCS--SCCGGGGSTTSTTSCCCTTTTCTTCCEEECCS-SCCCC
T ss_pred             cCCCCCEEECCCCCCC-cCChhh---hccccccCEEeCCC--CCccccchhhccCCcchhhcCCCCCCEEECCC-CCCCC
Confidence            5578888888887643 333322   67888899999988  455554321100  000114567899999998 67888


Q ss_pred             ccc-cCCCCCCccEEeeCCCCCCcccCCCCC--CCCccEEEecCCc
Q 018478          292 LSS-SIVDLQNLTSLYLVGCPKLKYFPEKGL--PSSLLELWIGGCP  334 (355)
Q Consensus       292 l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~--~~~L~~L~l~~c~  334 (355)
                      +|. .+.++++|++|++++| +++.++...+  +++|++|++.+|.
T Consensus       551 i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N~  595 (680)
T 1ziw_A          551 IPVEVFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKNL  595 (680)
T ss_dssp             CCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             CCHHHcccccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCCc
Confidence            876 4688999999999988 8999987654  6999999999884

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.86  E-value=1.3e-20  Score=171.32  Aligned_cols=262  Identities=16%  Similarity=0.180  Sum_probs=168.3

Q ss_pred             cceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccccchhcccccc--CCCCCcccEEEE
Q 018478           31 LKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEV--GNLPPSLKSLRV  108 (355)
Q Consensus        31 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~--~~~~~~L~~L~l  108 (355)
                      ....+.++ +.++.+|...              .++|++|+++++ .++.+             +.  ...+++|+.|++
T Consensus        33 ~~~c~~~~-~~l~~iP~~~--------------~~~L~~L~l~~n-~i~~~-------------~~~~~~~l~~L~~L~L   83 (353)
T 2z80_A           33 NGICKGSS-GSLNSIPSGL--------------TEAVKSLDLSNN-RITYI-------------SNSDLQRCVNLQALVL   83 (353)
T ss_dssp             TSEEECCS-TTCSSCCTTC--------------CTTCCEEECTTS-CCCEE-------------CTTTTTTCTTCCEEEC
T ss_pred             CeEeeCCC-CCcccccccc--------------cccCcEEECCCC-cCccc-------------CHHHhccCCCCCEEEC
Confidence            34455555 4566666654              456777777764 34444             32  234567777777


Q ss_pred             ccCcchhch-hhhccCCCCCcEEEeeccCCcCccccc-ccCCCCCceEeccccCCCcCCCC--CCCCCCCcceEEEcccc
Q 018478          109 QGCSKLESI-AETLDNSTSLETIHIFYCENMKILPSG-LHNLRQLQEISIEGCGNLESFPE--GGLPCAKLKEVVIRWCG  184 (355)
Q Consensus       109 ~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~~L~~L~l~~~~  184 (355)
                      ++|. +..+ +..+..+++|++|++++|. ++.++.. +..+++|+.|++++| .++.+|.  .+..+++|+.|++++|.
T Consensus        84 ~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~  160 (353)
T 2z80_A           84 TSNG-INTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMD  160 (353)
T ss_dssp             TTSC-CCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESS
T ss_pred             CCCc-cCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCc
Confidence            7776 5544 3456777777777777766 5555543 667777777777776 5556665  55667777777777765


Q ss_pred             CcCcc-cccccCCCCCceEEEeecCcC-----CCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcc
Q 018478          185 RLEAL-PKGLHNLKSLQKLTIGKGGLE-----EDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDM  258 (355)
Q Consensus       185 ~~~~~-p~~l~~~~~L~~L~l~~~~i~-----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  258 (355)
                      .++.+ +..+..+++|++|+++.+.+.     ....+++|+.|++++|.. ...+..+   +..+++|++|++++  +.+
T Consensus       161 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l-~~~~~~~---~~~~~~L~~L~L~~--n~l  234 (353)
T 2z80_A          161 TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH-ILLLEIF---VDVTSSVECLELRD--TDL  234 (353)
T ss_dssp             SCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS-TTHHHHH---HHHTTTEEEEEEES--CBC
T ss_pred             cccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc-ccchhhh---hhhcccccEEECCC--Ccc
Confidence            55554 346677777777777743332     234457888888888764 3333322   45578899999988  455


Q ss_pred             cccCccccccCCCCCCCCccceEEeccCC----CcccccccCCCCCCccEEeeCCCCCCcccCCCCC--CCCccEEEecC
Q 018478          259 VSFPPEDIRMGTTLPLPTSLTSLAIFSFP----NLERLSSSIVDLQNLTSLYLVGCPKLKYFPEKGL--PSSLLELWIGG  332 (355)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~----~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~--~~~L~~L~l~~  332 (355)
                      +.++.....   .......++.++++++.    .+..+|.++..+++|++|++++| +++.+|...+  +++|++|++.+
T Consensus       235 ~~~~~~~l~---~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~  310 (353)
T 2z80_A          235 DTFHFSELS---TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHT  310 (353)
T ss_dssp             TTCCCC---------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred             ccccccccc---cccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeC
Confidence            554432210   01234566777777642    23356777788999999999998 7888887543  78999999998


Q ss_pred             Cc
Q 018478          333 CP  334 (355)
Q Consensus       333 c~  334 (355)
                      ++
T Consensus       311 N~  312 (353)
T 2z80_A          311 NP  312 (353)
T ss_dssp             SC
T ss_pred             CC
Confidence            76

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.86  E-value=1.1e-20  Score=183.68  Aligned_cols=257  Identities=16%  Similarity=0.141  Sum_probs=188.8

Q ss_pred             CCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccccchhcccccc--CCCCCcccEE
Q 018478           29 RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEV--GNLPPSLKSL  106 (355)
Q Consensus        29 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~--~~~~~~L~~L  106 (355)
                      ++++.+++.++ .+..+|...           +..+++|+.|+++++. ++.+             +.  ...+++|+.|
T Consensus        51 ~~l~~l~l~~~-~l~~lp~~~-----------~~~l~~L~~L~L~~n~-l~~~-------------~~~~~~~l~~L~~L  104 (597)
T 3oja_B           51 NNQKIVTFKNS-TMRKLPAAL-----------LDSFRQVELLNLNDLQ-IEEI-------------DTYAFAYAHTIQKL  104 (597)
T ss_dssp             CCCSEEEESSC-EESEECTHH-----------HHHCCCCSEEECTTSC-CCEE-------------CTTTTTTCTTCCEE
T ss_pred             CCceEEEeeCC-CCCCcCHHH-----------HccCCCCcEEECCCCC-CCCC-------------ChHHhcCCCCCCEE
Confidence            78899999984 578888765           5668999999999864 5554             32  3556899999


Q ss_pred             EEccCcchhchh-hhccCCCCCcEEEeeccCCcCccccc-ccCCCCCceEeccccCCCcCC-CCCCCCCCCcceEEEccc
Q 018478          107 RVQGCSKLESIA-ETLDNSTSLETIHIFYCENMKILPSG-LHNLRQLQEISIEGCGNLESF-PEGGLPCAKLKEVVIRWC  183 (355)
Q Consensus       107 ~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~  183 (355)
                      ++++|. +..++ ..++.+++|++|++++|. +..+|.. ++++++|+.|++++| .+..+ |..+..+++|+.|++++|
T Consensus       105 ~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N  181 (597)
T 3oja_B          105 YMGFNA-IRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSN  181 (597)
T ss_dssp             ECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTS
T ss_pred             ECCCCc-CCCCCHHHHcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCC
Confidence            999998 66555 557899999999999987 6677654 588999999999998 45554 456888999999999996


Q ss_pred             cCcCcccccccCCCCCceEEEeecCcCCCC---------------------CCCCccEEEecCCcchhhhhhhhcccCCC
Q 018478          184 GRLEALPKGLHNLKSLQKLTIGKGGLEEDG---------------------LPTNLHSLDIRGNMEIWKSMIEWGQGFHR  242 (355)
Q Consensus       184 ~~~~~~p~~l~~~~~L~~L~l~~~~i~~~~---------------------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  242 (355)
                      . ++.++  ++.+++|+.|+++.+.+....                     .+++|+.|++++|.... ..   .  +..
T Consensus       182 ~-l~~~~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~-~~---~--l~~  252 (597)
T 3oja_B          182 R-LTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD-TA---W--LLN  252 (597)
T ss_dssp             C-CSBCC--GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC-CG---G--GGG
T ss_pred             C-CCCcC--hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCC-Ch---h--hcc
Confidence            4 44432  455666666666533333222                     23566677776665332 21   1  667


Q ss_pred             CCccceeEecccCCccccc-CccccccCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEeeCCCCCCcccCCCC-
Q 018478          243 FSSLRELRIEGCDDDMVSF-PPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPEKG-  320 (355)
Q Consensus       243 l~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-  320 (355)
                      +++|+.|++++  +.+..+ |..+       ..+++|+.|++++ +.++.+|..+..+++|++|++++| .++.+|... 
T Consensus       253 l~~L~~L~Ls~--N~l~~~~~~~~-------~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~  321 (597)
T 3oja_B          253 YPGLVEVDLSY--NELEKIMYHPF-------VKMQRLERLYISN-NRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQP  321 (597)
T ss_dssp             CTTCSEEECCS--SCCCEEESGGG-------TTCSSCCEEECTT-SCCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHH
T ss_pred             CCCCCEEECCC--CccCCCCHHHh-------cCccCCCEEECCC-CCCCCCCcccccCCCCcEEECCCC-CCCccCcccc
Confidence            88899999988  445444 4444       5678899999998 678888877778899999999998 687776532 


Q ss_pred             CCCCccEEEecCCc
Q 018478          321 LPSSLLELWIGGCP  334 (355)
Q Consensus       321 ~~~~L~~L~l~~c~  334 (355)
                      .+++|++|++++|.
T Consensus       322 ~l~~L~~L~L~~N~  335 (597)
T 3oja_B          322 QFDRLENLYLDHNS  335 (597)
T ss_dssp             HHTTCSEEECCSSC
T ss_pred             cCCCCCEEECCCCC
Confidence            26889999998876

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.86  E-value=1.4e-20  Score=181.78  Aligned_cols=128  Identities=26%  Similarity=0.269  Sum_probs=84.3

Q ss_pred             ccCCCCCceEEEeecCc----C--CCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcc-cccCccc
Q 018478          193 LHNLKSLQKLTIGKGGL----E--EDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDM-VSFPPED  265 (355)
Q Consensus       193 l~~~~~L~~L~l~~~~i----~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~  265 (355)
                      +..+++|++|+++.+.+    +  ....+++|+.|++++|......+.  .  +.++++|++|++++ |... ..+|..+
T Consensus       392 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~--~~~l~~L~~L~l~~-n~l~~~~~p~~~  466 (570)
T 2z63_A          392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG--I--FNGLSSLEVLKMAG-NSFQENFLPDIF  466 (570)
T ss_dssp             EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTT--T--TTTCTTCCEEECTT-CEEGGGEECSCC
T ss_pred             ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchh--h--hhcCCcCcEEECcC-CcCccccchhhh
Confidence            44555555555552111    1  123456777777777654332221  1  56778888888887 3322 2455544


Q ss_pred             cccCCCCCCCCccceEEeccCCCcccc-cccCCCCCCccEEeeCCCCCCcccCCCCC--CCCccEEEecCCc
Q 018478          266 IRMGTTLPLPTSLTSLAIFSFPNLERL-SSSIVDLQNLTSLYLVGCPKLKYFPEKGL--PSSLLELWIGGCP  334 (355)
Q Consensus       266 ~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~--~~~L~~L~l~~c~  334 (355)
                             ..+++|++|++++| .++.+ |..+..+++|++|++++| +++.++...+  +++|++|++.+++
T Consensus       467 -------~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~  529 (570)
T 2z63_A          467 -------TELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNP  529 (570)
T ss_dssp             -------TTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             -------hcccCCCEEECCCC-ccccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCc
Confidence                   56788999999984 56655 667788999999999998 7888876544  6899999999875

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.86  E-value=1.4e-21  Score=174.78  Aligned_cols=245  Identities=16%  Similarity=0.115  Sum_probs=186.6

Q ss_pred             ccccEEEecCCCccc--hhccccccchhccccccCCCCCcccEEEEcc-CcchhchhhhccCCCCCcEEEeeccCCcCcc
Q 018478           65 YLLEELCISSCRSLT--SIFSKNELSATLESLEVGNLPPSLKSLRVQG-CSKLESIAETLDNSTSLETIHIFYCENMKIL  141 (355)
Q Consensus        65 ~~L~~L~l~~~~~l~--~~~~~n~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  141 (355)
                      .+++.|+++++..-.  .+          +  +....+++|++|++++ |.....+|..++.+++|++|++++|.....+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~----------~--~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~  117 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPI----------P--SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAI  117 (313)
T ss_dssp             CCEEEEEEECCCCSSCEEC----------C--GGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEEC
T ss_pred             ceEEEEECCCCCccCCccc----------C--hhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcC
Confidence            578888888753221  22          1  1224457999999995 6534468888999999999999999855578


Q ss_pred             cccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEccccCcCcccccccCCC-CCceEEEeecCc----CC-CCCC
Q 018478          142 PSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLK-SLQKLTIGKGGL----EE-DGLP  215 (355)
Q Consensus       142 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~-~L~~L~l~~~~i----~~-~~~~  215 (355)
                      |..+..+++|+.|++++|.....+|..+..+++|++|++++|.....+|..+..++ +|++|+++.+.+    +. ....
T Consensus       118 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l  197 (313)
T 1ogq_A          118 PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL  197 (313)
T ss_dssp             CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC
T ss_pred             CHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC
Confidence            88899999999999999844347788888899999999999765557888999888 999999983333    22 2233


Q ss_pred             CCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcc-cccc
Q 018478          216 TNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLE-RLSS  294 (355)
Q Consensus       216 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~l~~  294 (355)
                      + |+.|++++|......+.  .  +..+++|++|++++  +.+...++..       ..+++|++|+++++ .++ .+|.
T Consensus       198 ~-L~~L~Ls~N~l~~~~~~--~--~~~l~~L~~L~L~~--N~l~~~~~~~-------~~l~~L~~L~Ls~N-~l~~~~p~  262 (313)
T 1ogq_A          198 N-LAFVDLSRNMLEGDASV--L--FGSDKNTQKIHLAK--NSLAFDLGKV-------GLSKNLNGLDLRNN-RIYGTLPQ  262 (313)
T ss_dssp             C-CSEEECCSSEEEECCGG--G--CCTTSCCSEEECCS--SEECCBGGGC-------CCCTTCCEEECCSS-CCEECCCG
T ss_pred             c-ccEEECcCCcccCcCCH--H--HhcCCCCCEEECCC--CceeeecCcc-------cccCCCCEEECcCC-cccCcCCh
Confidence            3 99999999875543332  2  78899999999998  4454433334       46789999999994 555 7888


Q ss_pred             cCCCCCCccEEeeCCCCCCc-ccCCCCCCCCccEEEecCCchhh
Q 018478          295 SIVDLQNLTSLYLVGCPKLK-YFPEKGLPSSLLELWIGGCPLIE  337 (355)
Q Consensus       295 ~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~L~~L~l~~c~~l~  337 (355)
                      ++..+++|++|++++| +++ .+|..+-+++|+++++.+++.+.
T Consensus       263 ~l~~l~~L~~L~Ls~N-~l~~~ip~~~~l~~L~~l~l~~N~~lc  305 (313)
T 1ogq_A          263 GLTQLKFLHSLNVSFN-NLCGEIPQGGNLQRFDVSAYANNKCLC  305 (313)
T ss_dssp             GGGGCTTCCEEECCSS-EEEEECCCSTTGGGSCGGGTCSSSEEE
T ss_pred             HHhcCcCCCEEECcCC-cccccCCCCccccccChHHhcCCCCcc
Confidence            8899999999999999 666 66665557899999999988654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.85  E-value=2.3e-19  Score=173.76  Aligned_cols=253  Identities=28%  Similarity=0.308  Sum_probs=196.3

Q ss_pred             CccEEeecccccCcccccCccCCCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccc
Q 018478            7 SLEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNE   86 (355)
Q Consensus         7 ~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~   86 (355)
                      +++.|++++ ..++.+|. .++++|++|+++++ .++.+|. .              +++|+.|+++++ .++.+     
T Consensus        41 ~l~~L~ls~-n~L~~lp~-~l~~~L~~L~L~~N-~l~~lp~-~--------------l~~L~~L~Ls~N-~l~~l-----   96 (622)
T 3g06_A           41 GNAVLNVGE-SGLTTLPD-CLPAHITTLVIPDN-NLTSLPA-L--------------PPELRTLEVSGN-QLTSL-----   96 (622)
T ss_dssp             CCCEEECCS-SCCSCCCS-CCCTTCSEEEECSC-CCSCCCC-C--------------CTTCCEEEECSC-CCSCC-----
T ss_pred             CCcEEEecC-CCcCccCh-hhCCCCcEEEecCC-CCCCCCC-c--------------CCCCCEEEcCCC-cCCcC-----
Confidence            588999985 56888874 45589999999995 5787777 2              788999999986 46666     


Q ss_pred             cchhccccccCCCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCC
Q 018478           87 LSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFP  166 (355)
Q Consensus        87 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~  166 (355)
                              +.  .+++|++|++++|. +..+|.   .+++|+.|++++|. +..+|..   +++|+.|++++| .+..+|
T Consensus        97 --------p~--~l~~L~~L~Ls~N~-l~~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N-~l~~l~  157 (622)
T 3g06_A           97 --------PV--LPPGLLELSIFSNP-LTHLPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDN-QLASLP  157 (622)
T ss_dssp             --------CC--CCTTCCEEEECSCC-CCCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSS-CCSCCC
T ss_pred             --------CC--CCCCCCEEECcCCc-CCCCCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCC-cCCCcC
Confidence                    65  55899999999987 777766   47899999999987 7777764   588999999987 667776


Q ss_pred             CCCCCCCCcceEEEccccCcCcccccccCCCCCceEEEeecCcCCC-CCCCCccEEEecCCcchhhhhhhhcccCCCCCc
Q 018478          167 EGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEED-GLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSS  245 (355)
Q Consensus       167 ~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~  245 (355)
                      ..   +.+|+.|++++| .++.+|   ..+++|+.|+++.+.+... ..+++|+.|++++|... .++       ..+++
T Consensus       158 ~~---~~~L~~L~L~~N-~l~~l~---~~~~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~-~l~-------~~~~~  222 (622)
T 3g06_A          158 AL---PSELCKLWAYNN-QLTSLP---MLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLT-SLP-------ALPSG  222 (622)
T ss_dssp             CC---CTTCCEEECCSS-CCSCCC---CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCC-------CCCTT
T ss_pred             Cc---cCCCCEEECCCC-CCCCCc---ccCCCCcEEECCCCCCCCCCCccchhhEEECcCCccc-ccC-------CCCCC
Confidence            53   368999999985 566676   5578899999986555543 24679999999988643 222       23478


Q ss_pred             cceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEeeCCCCCCcccCCC-CCCCC
Q 018478          246 LRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPEK-GLPSS  324 (355)
Q Consensus       246 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~  324 (355)
                      |++|++++  +.++.+|.          .+++|+.|++++ +.++.+|.   .+++|++|++++| +++.+|.. .-+++
T Consensus       223 L~~L~Ls~--N~L~~lp~----------~l~~L~~L~Ls~-N~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~~l~~l~~  285 (622)
T 3g06_A          223 LKELIVSG--NRLTSLPV----------LPSELKELMVSG-NRLTSLPM---LPSGLLSLSVYRN-QLTRLPESLIHLSS  285 (622)
T ss_dssp             CCEEECCS--SCCSCCCC----------CCTTCCEEECCS-SCCSCCCC---CCTTCCEEECCSS-CCCSCCGGGGGSCT
T ss_pred             CCEEEccC--CccCcCCC----------CCCcCcEEECCC-CCCCcCCc---ccccCcEEeCCCC-CCCcCCHHHhhccc
Confidence            99999998  57777772          457899999998 58888884   7889999999998 78888753 22789


Q ss_pred             ccEEEecCCc
Q 018478          325 LLELWIGGCP  334 (355)
Q Consensus       325 L~~L~l~~c~  334 (355)
                      |+.|++.+|+
T Consensus       286 L~~L~L~~N~  295 (622)
T 3g06_A          286 ETTVNLEGNP  295 (622)
T ss_dssp             TCEEECCSCC
T ss_pred             cCEEEecCCC
Confidence            9999999886

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.84  E-value=2.7e-20  Score=165.82  Aligned_cols=57  Identities=21%  Similarity=0.220  Sum_probs=24.3

Q ss_pred             CcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCccc--ccccCCCCCceEecccc
Q 018478          101 PSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILP--SGLHNLRQLQEISIEGC  159 (355)
Q Consensus       101 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~  159 (355)
                      ++|++|++++|. +..+|..+..+++|++|++++|. +..++  ..+..+++|+.|++++|
T Consensus        78 ~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n  136 (306)
T 2z66_A           78 TSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHT  136 (306)
T ss_dssp             SCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTS
T ss_pred             cccCEEECCCCc-cccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCC
Confidence            344555554444 33344444444444444444443 22222  13334444444444443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.84  E-value=6.1e-19  Score=165.44  Aligned_cols=149  Identities=27%  Similarity=0.241  Sum_probs=68.9

Q ss_pred             CCccEEeecccccCcccccCccCCCcceEecccCcccccccccc-CcCCC-------CCCCccccccccccEEEecCCCc
Q 018478            6 SSLEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEE-GIQSS-------SSSSSRRYTSYLLEELCISSCRS   77 (355)
Q Consensus         6 ~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~-------~~~~~~~~~~~~L~~L~l~~~~~   77 (355)
                      ++|++|++++ +.++.++.  .+++|++|+++++ .+..++... .++.+       ...+ .+..+++|++|+++++ .
T Consensus        91 ~~L~~L~l~~-n~l~~lp~--~~~~L~~L~l~~n-~l~~l~~~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N-~  164 (454)
T 1jl5_A           91 PHLESLVASC-NSLTELPE--LPQSLKSLLVDNN-NLKALSDLPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNN-S  164 (454)
T ss_dssp             TTCSEEECCS-SCCSSCCC--CCTTCCEEECCSS-CCSCCCSCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS-C
T ss_pred             CCCCEEEccC-CcCCcccc--ccCCCcEEECCCC-ccCcccCCCCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCC-c
Confidence            4677777764 34555542  2366666666663 344433210 00000       0011 1344555666666553 2


Q ss_pred             cchhccccccchhccccccCCCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEecc
Q 018478           78 LTSIFSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIE  157 (355)
Q Consensus        78 l~~~~~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  157 (355)
                      ++.+             +.  .+++|+.|++++|. +..+| .++.+++|++|++++|. +..+|..   .++|+.|+++
T Consensus       165 l~~l-------------p~--~~~~L~~L~L~~n~-l~~l~-~~~~l~~L~~L~l~~N~-l~~l~~~---~~~L~~L~l~  223 (454)
T 1jl5_A          165 LKKL-------------PD--LPPSLEFIAAGNNQ-LEELP-ELQNLPFLTAIYADNNS-LKKLPDL---PLSLESIVAG  223 (454)
T ss_dssp             CSCC-------------CC--CCTTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSSC-CSSCCCC---CTTCCEEECC
T ss_pred             Cccc-------------CC--CcccccEEECcCCc-CCcCc-cccCCCCCCEEECCCCc-CCcCCCC---cCcccEEECc
Confidence            2322             21  12355555555554 44444 34555555555555544 3333322   1345555555


Q ss_pred             ccCCCcCCCCCCCCCCCcceEEEccc
Q 018478          158 GCGNLESFPEGGLPCAKLKEVVIRWC  183 (355)
Q Consensus       158 ~~~~l~~~~~~~~~~~~L~~L~l~~~  183 (355)
                      +| .+..+|. +..+++|+.|++++|
T Consensus       224 ~n-~l~~lp~-~~~l~~L~~L~l~~N  247 (454)
T 1jl5_A          224 NN-ILEELPE-LQNLPFLTTIYADNN  247 (454)
T ss_dssp             SS-CCSSCCC-CTTCTTCCEEECCSS
T ss_pred             CC-cCCcccc-cCCCCCCCEEECCCC
Confidence            54 3344442 444555555555553

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.84  E-value=1.1e-20  Score=169.02  Aligned_cols=246  Identities=17%  Similarity=0.158  Sum_probs=188.9

Q ss_pred             CCcceEecccCcccc---ccccccCcCCCCCCCccccccccccEEEecCCCccc-hhccccccchhcccccc-CCCCCcc
Q 018478           29 RSLKRLDIQCCSNIR---TLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLT-SIFSKNELSATLESLEV-GNLPPSL  103 (355)
Q Consensus        29 ~~L~~L~l~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~n~~~~~~~~~~~-~~~~~~L  103 (355)
                      .++++|+++++. +.   .+|..            +..+++|++|+++++..+. .+             +. ...+++|
T Consensus        50 ~~l~~L~L~~~~-l~~~~~~~~~------------l~~l~~L~~L~L~~~n~l~~~~-------------p~~l~~l~~L  103 (313)
T 1ogq_A           50 YRVNNLDLSGLN-LPKPYPIPSS------------LANLPYLNFLYIGGINNLVGPI-------------PPAIAKLTQL  103 (313)
T ss_dssp             CCEEEEEEECCC-CSSCEECCGG------------GGGCTTCSEEEEEEETTEESCC-------------CGGGGGCTTC
T ss_pred             ceEEEEECCCCC-ccCCcccChh------------HhCCCCCCeeeCCCCCcccccC-------------ChhHhcCCCC
Confidence            579999999854 55   35543            4668999999998633444 23             32 2445799


Q ss_pred             cEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCC-CcceEEEcc
Q 018478          104 KSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCA-KLKEVVIRW  182 (355)
Q Consensus       104 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~-~L~~L~l~~  182 (355)
                      ++|++++|.....+|..+..+++|++|++++|.....+|..+..+++|+.|++++|.....+|..+..++ +|+.|++++
T Consensus       104 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~  183 (313)
T 1ogq_A          104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR  183 (313)
T ss_dssp             SEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCS
T ss_pred             CEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcC
Confidence            9999999983347888899999999999999885557888899999999999999844347888888887 999999999


Q ss_pred             ccCcCcccccccCCCCCceEEEeecCcC-----CCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCc
Q 018478          183 CGRLEALPKGLHNLKSLQKLTIGKGGLE-----EDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDD  257 (355)
Q Consensus       183 ~~~~~~~p~~l~~~~~L~~L~l~~~~i~-----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  257 (355)
                      |......|..+..++ |++|+++.+.+.     ....+++|+.|++++|......+.     +..+++|++|++++  +.
T Consensus       184 N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-----~~~l~~L~~L~Ls~--N~  255 (313)
T 1ogq_A          184 NRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-----VGLSKNLNGLDLRN--NR  255 (313)
T ss_dssp             SEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-----CCCCTTCCEEECCS--SC
T ss_pred             CeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-----ccccCCCCEEECcC--Cc
Confidence            765557788888887 999999843332     245678999999999876543332     67889999999998  44


Q ss_pred             cc-ccCccccccCCCCCCCCccceEEeccCCCcc-cccccCCCCCCccEEeeCCCCCCcccC
Q 018478          258 MV-SFPPEDIRMGTTLPLPTSLTSLAIFSFPNLE-RLSSSIVDLQNLTSLYLVGCPKLKYFP  317 (355)
Q Consensus       258 ~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~l~~~~~~~~~L~~L~l~~~~~l~~~~  317 (355)
                      +. .+|..+       ..+++|++|++++ +.++ .+|.. ..+++|+.+++.+|+.+...|
T Consensus       256 l~~~~p~~l-------~~l~~L~~L~Ls~-N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p  308 (313)
T 1ogq_A          256 IYGTLPQGL-------TQLKFLHSLNVSF-NNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             CEECCCGGG-------GGCTTCCEEECCS-SEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred             ccCcCChHH-------hcCcCCCEEECcC-CcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence            54 677666       5778999999999 4665 66654 788999999999997565543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.84  E-value=2.6e-19  Score=174.89  Aligned_cols=109  Identities=20%  Similarity=0.159  Sum_probs=84.9

Q ss_pred             CCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCccccc
Q 018478          214 LPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLS  293 (355)
Q Consensus       214 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~  293 (355)
                      ..++++.|++++|.......+..   +..+++|++|++++  +.++.+++..+      ..+++|++|++++ +.++.++
T Consensus       467 ~~~~L~~L~Ls~N~~~~~~~~~~---~~~l~~L~~L~Ls~--N~L~~l~~~~f------~~l~~L~~L~Ls~-N~l~~l~  534 (635)
T 4g8a_A          467 GLSSLEVLKMAGNSFQENFLPDI---FTELRNLTFLDLSQ--CQLEQLSPTAF------NSLSSLQVLNMSH-NNFFSLD  534 (635)
T ss_dssp             TCTTCCEEECTTCEEGGGEECSC---CTTCTTCCEEECTT--SCCCEECTTTT------TTCTTCCEEECTT-SCCCBCC
T ss_pred             cchhhhhhhhhhcccccccCchh---hhhccccCEEECCC--CccCCcChHHH------cCCCCCCEEECCC-CcCCCCC
Confidence            34678888888887555443322   78899999999998  56777655432      5778999999999 6788775


Q ss_pred             c-cCCCCCCccEEeeCCCCCCcccCCCCC---CCCccEEEecCCch
Q 018478          294 S-SIVDLQNLTSLYLVGCPKLKYFPEKGL---PSSLLELWIGGCPL  335 (355)
Q Consensus       294 ~-~~~~~~~L~~L~l~~~~~l~~~~~~~~---~~~L~~L~l~~c~~  335 (355)
                      . .+..+++|++|++++| +++.++...+   +++|++|+++++|.
T Consensus       535 ~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~Np~  579 (635)
T 4g8a_A          535 TFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQNDF  579 (635)
T ss_dssp             CGGGTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTTCCB
T ss_pred             hhHHhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeCCCC
Confidence            4 5788999999999998 8999877654   47899999987663

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.84  E-value=5.6e-19  Score=165.70  Aligned_cols=277  Identities=26%  Similarity=0.286  Sum_probs=177.6

Q ss_pred             CccEEeecccccCcccccCccCCCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCC---------c
Q 018478            7 SLEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCR---------S   77 (355)
Q Consensus         7 ~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~---------~   77 (355)
                      .+++|+++++ .++.+|.  ++++|++|++++ +.++.+|..               .++|++|+++++.         .
T Consensus        72 ~l~~L~l~~~-~l~~lp~--~~~~L~~L~l~~-n~l~~lp~~---------------~~~L~~L~l~~n~l~~l~~~~~~  132 (454)
T 1jl5_A           72 QAHELELNNL-GLSSLPE--LPPHLESLVASC-NSLTELPEL---------------PQSLKSLLVDNNNLKALSDLPPL  132 (454)
T ss_dssp             TCSEEECTTS-CCSCCCS--CCTTCSEEECCS-SCCSSCCCC---------------CTTCCEEECCSSCCSCCCSCCTT
T ss_pred             CCCEEEecCC-ccccCCC--CcCCCCEEEccC-CcCCccccc---------------cCCCcEEECCCCccCcccCCCCC
Confidence            3689999976 5777664  568999999998 557777643               3456666655431         1


Q ss_pred             cchh-ccccccchhccccccCCCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEec
Q 018478           78 LTSI-FSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISI  156 (355)
Q Consensus        78 l~~~-~~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  156 (355)
                      ++.+ +++|.+.+ +   +....+++|++|++++|. +..+|..   .++|++|++++|. ++.+| .++.+++|+.|++
T Consensus       133 L~~L~L~~n~l~~-l---p~~~~l~~L~~L~l~~N~-l~~lp~~---~~~L~~L~L~~n~-l~~l~-~~~~l~~L~~L~l  202 (454)
T 1jl5_A          133 LEYLGVSNNQLEK-L---PELQNSSFLKIIDVDNNS-LKKLPDL---PPSLEFIAAGNNQ-LEELP-ELQNLPFLTAIYA  202 (454)
T ss_dssp             CCEEECCSSCCSS-C---CCCTTCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSC-CSSCC-CCTTCTTCCEEEC
T ss_pred             CCEEECcCCCCCC-C---cccCCCCCCCEEECCCCc-CcccCCC---cccccEEECcCCc-CCcCc-cccCCCCCCEEEC
Confidence            1122 33333332 1   433445678888888776 6556543   3578888888776 55566 5778888888888


Q ss_pred             cccCCCcCCCCCCCCCCCcceEEEccccCcCcccccccCCCCCceEEEeecCcCCC-CCCCCccEEEecCCcchhhhhhh
Q 018478          157 EGCGNLESFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEED-GLPTNLHSLDIRGNMEIWKSMIE  235 (355)
Q Consensus       157 ~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~~-~~~~~L~~L~l~~~~~~~~~~~~  235 (355)
                      ++| .+..+|...   ++|+.|++++| .++.+| .++.+++|++|+++.+.+... ..+++|+.|++++|.... ++. 
T Consensus       203 ~~N-~l~~l~~~~---~~L~~L~l~~n-~l~~lp-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~-l~~-  274 (454)
T 1jl5_A          203 DNN-SLKKLPDLP---LSLESIVAGNN-ILEELP-ELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTD-LPE-  274 (454)
T ss_dssp             CSS-CCSSCCCCC---TTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSC-CCC-
T ss_pred             CCC-cCCcCCCCc---CcccEEECcCC-cCCccc-ccCCCCCCCEEECCCCcCCcccccccccCEEECCCCcccc-cCc-
Confidence            886 556665432   47888888886 455777 488889999999985444432 235788888888876332 221 


Q ss_pred             hcccCCCCCccceeEecccCCcccccCc---ccccc-------CCCCCCCCccceEEeccCCCcccccccCCCCCCccEE
Q 018478          236 WGQGFHRFSSLRELRIEGCDDDMVSFPP---EDIRM-------GTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSL  305 (355)
Q Consensus       236 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~~-------~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L  305 (355)
                            ..++|++|++++  +.++.++.   ....+       ......+++|++|++++ +.++.+|.   .+++|++|
T Consensus       275 ------~~~~L~~L~ls~--N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~-N~l~~lp~---~~~~L~~L  342 (454)
T 1jl5_A          275 ------LPQSLTFLDVSE--NIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSN-NKLIELPA---LPPRLERL  342 (454)
T ss_dssp             ------CCTTCCEEECCS--SCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCS-SCCSCCCC---CCTTCCEE
T ss_pred             ------ccCcCCEEECcC--CccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCC-Cccccccc---cCCcCCEE
Confidence                  125566666665  23332221   00000       00002335788888887 56777773   46889999


Q ss_pred             eeCCCCCCcccCCCCCCCCccEEEecCCch
Q 018478          306 YLVGCPKLKYFPEKGLPSSLLELWIGGCPL  335 (355)
Q Consensus       306 ~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~  335 (355)
                      ++++| +++.+|.  .+++|++|++++|+-
T Consensus       343 ~L~~N-~l~~lp~--~l~~L~~L~L~~N~l  369 (454)
T 1jl5_A          343 IASFN-HLAEVPE--LPQNLKQLHVEYNPL  369 (454)
T ss_dssp             ECCSS-CCSCCCC--CCTTCCEEECCSSCC
T ss_pred             ECCCC-ccccccc--hhhhccEEECCCCCC
Confidence            99988 7888877  678999999988753

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.83  E-value=1.4e-19  Score=161.12  Aligned_cols=238  Identities=19%  Similarity=0.174  Sum_probs=148.8

Q ss_pred             eEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccccchhccccccC--CCCCcccEEEEcc
Q 018478           33 RLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEVG--NLPPSLKSLRVQG  110 (355)
Q Consensus        33 ~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~--~~~~~L~~L~l~~  110 (355)
                      .++.++ ..++.+|...              .++|++|+++++ .++.+             +..  ..+++|+.|++++
T Consensus        11 ~l~c~~-~~l~~ip~~~--------------~~~l~~L~L~~n-~l~~i-------------~~~~~~~l~~L~~L~L~~   61 (306)
T 2z66_A           11 EIRCNS-KGLTSVPTGI--------------PSSATRLELESN-KLQSL-------------PHGVFDKLTQLTKLSLSS   61 (306)
T ss_dssp             EEECCS-SCCSSCCSCC--------------CTTCCEEECCSS-CCCCC-------------CTTTTTTCTTCSEEECCS
T ss_pred             EEEcCC-CCcccCCCCC--------------CCCCCEEECCCC-ccCcc-------------CHhHhhccccCCEEECCC
Confidence            455555 3466666654              556777777765 34444             432  3457888888888


Q ss_pred             Ccchhch---hhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCC--CCCCCCCcceEEEccccC
Q 018478          111 CSKLESI---AETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPE--GGLPCAKLKEVVIRWCGR  185 (355)
Q Consensus       111 ~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~~L~~L~l~~~~~  185 (355)
                      |. +..+   +..+..+++|++|++++|. +..++..+..+++|+.|++++| .+..++.  .+..+++|+.|++++|..
T Consensus        62 n~-l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l  138 (306)
T 2z66_A           62 NG-LSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHT  138 (306)
T ss_dssp             SC-CCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCC
T ss_pred             Cc-cCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcC
Confidence            76 4433   4556678999999999988 7778888999999999999997 5666653  677899999999999765


Q ss_pred             cCcccccccCCCCCceEEEeecCcCCCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCccc
Q 018478          186 LEALPKGLHNLKSLQKLTIGKGGLEEDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPED  265 (355)
Q Consensus       186 ~~~~p~~l~~~~~L~~L~l~~~~i~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~  265 (355)
                      ....+..+..+++|++|+++                   +|.......+. .  +..+++|++|++++  +.+..++...
T Consensus       139 ~~~~~~~~~~l~~L~~L~l~-------------------~n~l~~~~~~~-~--~~~l~~L~~L~Ls~--n~l~~~~~~~  194 (306)
T 2z66_A          139 RVAFNGIFNGLSSLEVLKMA-------------------GNSFQENFLPD-I--FTELRNLTFLDLSQ--CQLEQLSPTA  194 (306)
T ss_dssp             EECSTTTTTTCTTCCEEECT-------------------TCEEGGGEECS-C--CTTCTTCCEEECTT--SCCCEECTTT
T ss_pred             CccchhhcccCcCCCEEECC-------------------CCccccccchh-H--HhhCcCCCEEECCC--CCcCCcCHHH
Confidence            44555667777766666664                   43322211111 1  45556666666665  3344442221


Q ss_pred             cccCCCCCCCCccceEEeccCCCcccccc-cCCCCCCccEEeeCCCCCCcccCCCCC---CCCccEEEecCCc
Q 018478          266 IRMGTTLPLPTSLTSLAIFSFPNLERLSS-SIVDLQNLTSLYLVGCPKLKYFPEKGL---PSSLLELWIGGCP  334 (355)
Q Consensus       266 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~---~~~L~~L~l~~c~  334 (355)
                      +      ...++|++|++++ +.++.++. .+..+++|++|++++| +++..+...+   +++|++|++.+++
T Consensus       195 ~------~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          195 F------NSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             T------TTCTTCCEEECTT-SCCSBCCSGGGTTCTTCCEEECTTS-CCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred             h------cCCCCCCEEECCC-CccCccChhhccCcccCCEeECCCC-CCcccCHHHHHhhhccCCEEEccCCC
Confidence            1      3445666666666 34444433 3455666666666666 4555443322   2466666666654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.83  E-value=5.5e-19  Score=165.39  Aligned_cols=196  Identities=18%  Similarity=0.254  Sum_probs=108.7

Q ss_pred             CCcccEEEEccCcchhchh-hhccCCCCCcEEEeeccCCcCcccc-cccCCCCCceEeccccCCCcCCCC-CCCCCCCcc
Q 018478          100 PPSLKSLRVQGCSKLESIA-ETLDNSTSLETIHIFYCENMKILPS-GLHNLRQLQEISIEGCGNLESFPE-GGLPCAKLK  176 (355)
Q Consensus       100 ~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~  176 (355)
                      +++|+.|++++|. +..++ ..+..+++|++|++++|. ++.++. .+..+++|+.|++++| .+..++. .+..+++|+
T Consensus        87 l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~  163 (440)
T 3zyj_A           87 LRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLR  163 (440)
T ss_dssp             CSSCCEEECCSSC-CCEECGGGGTTCSSCCEEECCSSC-CSSCCTTTSCSCSSCCEEECCSC-CCCEECTTTTTTCTTCC
T ss_pred             CCCCCEEECCCCc-CCccChhhccCCccCCEEECCCCc-CCeeCHhHhhccccCceeeCCCC-cccccCHHHhhhCcccC
Confidence            4566666666665 44333 445566666666666655 444432 4556666666666665 3444442 445566666


Q ss_pred             eEEEccccCcCcccc-cccCCCCCceEEEe---ecCcCCCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEec
Q 018478          177 EVVIRWCGRLEALPK-GLHNLKSLQKLTIG---KGGLEEDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIE  252 (355)
Q Consensus       177 ~L~l~~~~~~~~~p~-~l~~~~~L~~L~l~---~~~i~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~  252 (355)
                      .|++++|+.+..++. .+..+++|++|+++   ...++....+++|+.|++++|.... .... .  +.++++|++|+++
T Consensus       164 ~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~-~--~~~l~~L~~L~L~  239 (440)
T 3zyj_A          164 RLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSA-IRPG-S--FQGLMHLQKLWMI  239 (440)
T ss_dssp             EEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCE-ECTT-T--TTTCTTCCEEECT
T ss_pred             EeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCc-cChh-h--hccCccCCEEECC
Confidence            666666555555543 45566666666665   2333444455566666666664322 2211 1  5566666666666


Q ss_pred             ccCCcccccCccccccCCCCCCCCccceEEeccCCCccccccc-CCCCCCccEEeeCCCC
Q 018478          253 GCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSS-IVDLQNLTSLYLVGCP  311 (355)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~~~~  311 (355)
                      +  +.+..++...+      ..+++|++|++++ +.++.++.. +..+++|+.|++++|+
T Consensus       240 ~--n~l~~~~~~~~------~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          240 Q--SQIQVIERNAF------DNLQSLVEINLAH-NNLTLLPHDLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             T--CCCCEECTTSS------TTCTTCCEEECTT-SCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred             C--CceeEEChhhh------cCCCCCCEEECCC-CCCCccChhHhccccCCCEEEcCCCC
Confidence            6  44444443321      3455666666666 455555432 3556666666666653

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.82  E-value=8.1e-19  Score=164.82  Aligned_cols=194  Identities=22%  Similarity=0.263  Sum_probs=81.9

Q ss_pred             CcccEEEEccCcchhchh-hhccCCCCCcEEEeeccCCcCccc-ccccCCCCCceEeccccCCCcCCCC-CCCCCCCcce
Q 018478          101 PSLKSLRVQGCSKLESIA-ETLDNSTSLETIHIFYCENMKILP-SGLHNLRQLQEISIEGCGNLESFPE-GGLPCAKLKE  177 (355)
Q Consensus       101 ~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~  177 (355)
                      ++|+.|++++|. +..++ ..+.++++|++|++++|. +..++ ..+..+++|+.|++++| .+..++. .+..+++|+.
T Consensus        99 ~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~  175 (452)
T 3zyi_A           99 HHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMR  175 (452)
T ss_dssp             TTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCE
T ss_pred             CCCCEEECCCCc-cCCcChhhccCcccCCEEECCCCc-CCccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccE
Confidence            445555555444 33222 334444555555555444 33332 22444455555555544 2333332 3334445555


Q ss_pred             EEEccccCcCcccc-cccCCCCCceEEEe---ecCcCCCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecc
Q 018478          178 VVIRWCGRLEALPK-GLHNLKSLQKLTIG---KGGLEEDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEG  253 (355)
Q Consensus       178 L~l~~~~~~~~~p~-~l~~~~~L~~L~l~---~~~i~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  253 (355)
                      |++++|+.++.++. .+..+++|+.|+++   ...++....+++|+.|++++|......+. .   +.++++|++|++++
T Consensus       176 L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~---~~~l~~L~~L~L~~  251 (452)
T 3zyi_A          176 LDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPG-S---FHGLSSLKKLWVMN  251 (452)
T ss_dssp             EECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGG-G---GTTCTTCCEEECTT
T ss_pred             EeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcc-c---ccCccCCCEEEeCC
Confidence            55554444444432 34444444444444   22222233344455555555442221111 1   44455555555554


Q ss_pred             cCCcccccCccccccCCCCCCCCccceEEeccCCCccccccc-CCCCCCccEEeeCCC
Q 018478          254 CDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSS-IVDLQNLTSLYLVGC  310 (355)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~~~  310 (355)
                        +.+..++...+      ..+++|+.|++++ +.++.++.. +..+++|++|++++|
T Consensus       252 --n~l~~~~~~~~------~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N  300 (452)
T 3zyi_A          252 --SQVSLIERNAF------DGLASLVELNLAH-NNLSSLPHDLFTPLRYLVELHLHHN  300 (452)
T ss_dssp             --SCCCEECTTTT------TTCTTCCEEECCS-SCCSCCCTTSSTTCTTCCEEECCSS
T ss_pred             --CcCceECHHHh------cCCCCCCEEECCC-CcCCccChHHhccccCCCEEEccCC
Confidence              23333322211      2334555555554 344444322 244455555555444

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.81  E-value=1.2e-18  Score=163.60  Aligned_cols=220  Identities=20%  Similarity=0.248  Sum_probs=174.8

Q ss_pred             ccCCCCCcccEEEEccCcchhch-hhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCC-CCCCC
Q 018478           95 EVGNLPPSLKSLRVQGCSKLESI-AETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPE-GGLPC  172 (355)
Q Consensus        95 ~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~  172 (355)
                      |. ..+++++.|++++|. +..+ +..+..+++|++|++++|......+..+.++++|+.|++++| .++.+|. .+..+
T Consensus        70 P~-~~~~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l  146 (452)
T 3zyi_A           70 PQ-GIPSNTRYLNLMENN-IQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYL  146 (452)
T ss_dssp             CS-CCCTTCSEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSSC
T ss_pred             CC-CCCCCccEEECcCCc-CceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-cCCccChhhhccc
Confidence            53 345799999999998 6554 577899999999999998843334577889999999999997 5777765 46779


Q ss_pred             CCcceEEEccccCcCccc-ccccCCCCCceEEEee-c---CcCC--CCCCCCccEEEecCCcchhhhhhhhcccCCCCCc
Q 018478          173 AKLKEVVIRWCGRLEALP-KGLHNLKSLQKLTIGK-G---GLEE--DGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSS  245 (355)
Q Consensus       173 ~~L~~L~l~~~~~~~~~p-~~l~~~~~L~~L~l~~-~---~i~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~  245 (355)
                      ++|++|++++|. ++.++ ..+..+++|++|+++. +   .++.  ...+++|+.|++++|... ..+.     +..+++
T Consensus       147 ~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-----~~~l~~  219 (452)
T 3zyi_A          147 SKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN-----LTPLVG  219 (452)
T ss_dssp             TTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCCC-----CTTCTT
T ss_pred             CCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-cccc-----cccccc
Confidence            999999999965 55555 4789999999999983 2   2332  345789999999998744 3332     788999


Q ss_pred             cceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccc-cccCCCCCCccEEeeCCCCCCcccCCCCC--C
Q 018478          246 LRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERL-SSSIVDLQNLTSLYLVGCPKLKYFPEKGL--P  322 (355)
Q Consensus       246 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~--~  322 (355)
                      |++|++++  +.+..+++..+      ..+++|+.|++++ +.++.+ +..+..+++|++|++++| +++.++...+  +
T Consensus       220 L~~L~Ls~--N~l~~~~~~~~------~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l  289 (452)
T 3zyi_A          220 LEELEMSG--NHFPEIRPGSF------HGLSSLKKLWVMN-SQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPL  289 (452)
T ss_dssp             CCEEECTT--SCCSEECGGGG------TTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTC
T ss_pred             ccEEECcC--CcCcccCcccc------cCccCCCEEEeCC-CcCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccc
Confidence            99999998  56666655433      5778999999999 566655 556788999999999999 8999987654  7


Q ss_pred             CCccEEEecCCc
Q 018478          323 SSLLELWIGGCP  334 (355)
Q Consensus       323 ~~L~~L~l~~c~  334 (355)
                      ++|++|++.++|
T Consensus       290 ~~L~~L~L~~Np  301 (452)
T 3zyi_A          290 RYLVELHLHHNP  301 (452)
T ss_dssp             TTCCEEECCSSC
T ss_pred             cCCCEEEccCCC
Confidence            899999999876

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.81  E-value=8.8e-19  Score=164.02  Aligned_cols=220  Identities=17%  Similarity=0.269  Sum_probs=175.4

Q ss_pred             ccCCCCCcccEEEEccCcchhchh-hhccCCCCCcEEEeeccCCcCcc-cccccCCCCCceEeccccCCCcCCCC-CCCC
Q 018478           95 EVGNLPPSLKSLRVQGCSKLESIA-ETLDNSTSLETIHIFYCENMKIL-PSGLHNLRQLQEISIEGCGNLESFPE-GGLP  171 (355)
Q Consensus        95 ~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~  171 (355)
                      |. ..+++++.|++++|. +..++ ..+..+++|++|++++|. +..+ +..+.++++|+.|++++| .++.++. .+..
T Consensus        59 P~-~~~~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~  134 (440)
T 3zyj_A           59 PD-GISTNTRLLNLHENQ-IQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVY  134 (440)
T ss_dssp             CS-CCCTTCSEEECCSCC-CCEECTTTTSSCSSCCEEECCSSC-CCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCS
T ss_pred             CC-CCCCCCcEEEccCCc-CCeeCHHHhhCCCCCCEEECCCCc-CCccChhhccCCccCCEEECCCC-cCCeeCHhHhhc
Confidence            54 345789999999998 66554 678899999999999988 5554 467889999999999997 6777775 5777


Q ss_pred             CCCcceEEEccccCcCccc-ccccCCCCCceEEEee-c---CcCC--CCCCCCccEEEecCCcchhhhhhhhcccCCCCC
Q 018478          172 CAKLKEVVIRWCGRLEALP-KGLHNLKSLQKLTIGK-G---GLEE--DGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFS  244 (355)
Q Consensus       172 ~~~L~~L~l~~~~~~~~~p-~~l~~~~~L~~L~l~~-~---~i~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~  244 (355)
                      +++|++|++++|. ++.++ ..+..+++|++|+++. .   .++.  ...+++|+.|++++|... .++.     +..++
T Consensus       135 l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-----~~~l~  207 (440)
T 3zyj_A          135 LSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-----LTPLI  207 (440)
T ss_dssp             CSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC-----CTTCS
T ss_pred             cccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc-----cCCCc
Confidence            9999999999965 55555 4789999999999983 2   2332  345789999999998743 3442     78899


Q ss_pred             ccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCccccc-ccCCCCCCccEEeeCCCCCCcccCCCCC--
Q 018478          245 SLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLS-SSIVDLQNLTSLYLVGCPKLKYFPEKGL--  321 (355)
Q Consensus       245 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~--  321 (355)
                      +|++|++++  +.+..++...+      ..+++|+.|++++ +.++.++ ..+..+++|++|++++| +++.++...+  
T Consensus       208 ~L~~L~Ls~--N~l~~~~~~~~------~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~  277 (440)
T 3zyj_A          208 KLDELDLSG--NHLSAIRPGSF------QGLMHLQKLWMIQ-SQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTP  277 (440)
T ss_dssp             SCCEEECTT--SCCCEECTTTT------TTCTTCCEEECTT-CCCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSS
T ss_pred             ccCEEECCC--CccCccChhhh------ccCccCCEEECCC-CceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhcc
Confidence            999999998  56766654332      5778999999999 5777664 46788999999999998 8999987654  


Q ss_pred             CCCccEEEecCCch
Q 018478          322 PSSLLELWIGGCPL  335 (355)
Q Consensus       322 ~~~L~~L~l~~c~~  335 (355)
                      +++|++|++.++|.
T Consensus       278 l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          278 LHHLERIHLHHNPW  291 (440)
T ss_dssp             CTTCCEEECCSSCE
T ss_pred             ccCCCEEEcCCCCc
Confidence            69999999998763

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.81  E-value=4.4e-19  Score=161.21  Aligned_cols=267  Identities=16%  Similarity=0.144  Sum_probs=196.5

Q ss_pred             CCCccEEeecccccCcccccCccCCCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccc
Q 018478            5 NSSLEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSK   84 (355)
Q Consensus         5 ~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~   84 (355)
                      |+.....++++ ..++.+|. .++++|++|+++++ .++.++...           +..+++|++|+++++ .++.+   
T Consensus        30 C~~~~~c~~~~-~~l~~iP~-~~~~~L~~L~l~~n-~i~~~~~~~-----------~~~l~~L~~L~L~~n-~l~~~---   91 (353)
T 2z80_A           30 CDRNGICKGSS-GSLNSIPS-GLTEAVKSLDLSNN-RITYISNSD-----------LQRCVNLQALVLTSN-GINTI---   91 (353)
T ss_dssp             ECTTSEEECCS-TTCSSCCT-TCCTTCCEEECTTS-CCCEECTTT-----------TTTCTTCCEEECTTS-CCCEE---
T ss_pred             CCCCeEeeCCC-CCcccccc-cccccCcEEECCCC-cCcccCHHH-----------hccCCCCCEEECCCC-ccCcc---
Confidence            34444555553 46777774 55689999999994 578777643           566999999999986 44544   


Q ss_pred             cccchhcccccc--CCCCCcccEEEEccCcchhchhhh-ccCCCCCcEEEeeccCCcCcccc--cccCCCCCceEecccc
Q 018478           85 NELSATLESLEV--GNLPPSLKSLRVQGCSKLESIAET-LDNSTSLETIHIFYCENMKILPS--GLHNLRQLQEISIEGC  159 (355)
Q Consensus        85 n~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~  159 (355)
                                +.  ...+++|++|++++|. +..++.. +..+++|++|++++|. +..++.  .+..+++|+.|++++|
T Consensus        92 ----------~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n  159 (353)
T 2z80_A           92 ----------EEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNM  159 (353)
T ss_dssp             ----------CTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEES
T ss_pred             ----------CHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCC
Confidence                      32  2445899999999988 7777654 8889999999999987 667765  6888999999999998


Q ss_pred             CCCcCCC-CCCCCCCCcceEEEccccCcCcccccccCCCCCceEEEeecCcCCC-----CCCCCccEEEecCCcchhhhh
Q 018478          160 GNLESFP-EGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEED-----GLPTNLHSLDIRGNMEIWKSM  233 (355)
Q Consensus       160 ~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~~-----~~~~~L~~L~l~~~~~~~~~~  233 (355)
                      ..+..++ ..+..+++|++|++++|......|..+..+++|++|+++.+.+...     ..+++|+.|++++|.......
T Consensus       160 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  239 (353)
T 2z80_A          160 DTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHF  239 (353)
T ss_dssp             SSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCC
T ss_pred             ccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccc
Confidence            6566664 5677899999999999765555578899999999999995555432     236899999999987443221


Q ss_pred             hhhcccCCCCCccceeEecccCC----cccccCccccccCCCCCCCCccceEEeccCCCcccccccC-CCCCCccEEeeC
Q 018478          234 IEWGQGFHRFSSLRELRIEGCDD----DMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSI-VDLQNLTSLYLV  308 (355)
Q Consensus       234 ~~~~~~~~~l~~L~~L~l~~~~~----~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~-~~~~~L~~L~l~  308 (355)
                      ... ......+.++.+++++ +.    .+..+|..+       ..+++|++|++++ +.++.+|..+ ..+++|++|+++
T Consensus       240 ~~l-~~~~~~~~l~~l~L~~-~~l~~~~l~~l~~~l-------~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~L~  309 (353)
T 2z80_A          240 SEL-STGETNSLIKKFTFRN-VKITDESLFQVMKLL-------NQISGLLELEFSR-NQLKSVPDGIFDRLTSLQKIWLH  309 (353)
T ss_dssp             C-------CCCCCCEEEEES-CBCCHHHHHHHHHHH-------HTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECC
T ss_pred             ccc-ccccccchhhcccccc-ccccCcchhhhHHHH-------hcccCCCEEECCC-CCCCccCHHHHhcCCCCCEEEee
Confidence            111 0123456778888877 22    122345444       4678999999999 6888998875 889999999999


Q ss_pred             CCC
Q 018478          309 GCP  311 (355)
Q Consensus       309 ~~~  311 (355)
                      +|+
T Consensus       310 ~N~  312 (353)
T 2z80_A          310 TNP  312 (353)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            984

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.80  E-value=4.4e-18  Score=164.79  Aligned_cols=232  Identities=28%  Similarity=0.323  Sum_probs=187.4

Q ss_pred             CCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccccchhccccccCCCCCcccEEEE
Q 018478           29 RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRV  108 (355)
Q Consensus        29 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~~~~~~L~~L~l  108 (355)
                      .+++.|++++ +.++.+|...              .++|+.|+++++ .++.+             +.  .+++|++|++
T Consensus        40 ~~l~~L~ls~-n~L~~lp~~l--------------~~~L~~L~L~~N-~l~~l-------------p~--~l~~L~~L~L   88 (622)
T 3g06_A           40 NGNAVLNVGE-SGLTTLPDCL--------------PAHITTLVIPDN-NLTSL-------------PA--LPPELRTLEV   88 (622)
T ss_dssp             HCCCEEECCS-SCCSCCCSCC--------------CTTCSEEEECSC-CCSCC-------------CC--CCTTCCEEEE
T ss_pred             CCCcEEEecC-CCcCccChhh--------------CCCCcEEEecCC-CCCCC-------------CC--cCCCCCEEEc
Confidence            4689999998 5688888876              578999999986 56677             65  5689999999


Q ss_pred             ccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEccccCcCc
Q 018478          109 QGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEA  188 (355)
Q Consensus       109 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~  188 (355)
                      ++|. ++.+|.   .+++|++|++++|. +..+|.   .+++|+.|++++| .+..+|..   +++|+.|++++| .++.
T Consensus        89 s~N~-l~~lp~---~l~~L~~L~Ls~N~-l~~l~~---~l~~L~~L~L~~N-~l~~lp~~---l~~L~~L~Ls~N-~l~~  155 (622)
T 3g06_A           89 SGNQ-LTSLPV---LPPGLLELSIFSNP-LTHLPA---LPSGLCKLWIFGN-QLTSLPVL---PPGLQELSVSDN-QLAS  155 (622)
T ss_dssp             CSCC-CSCCCC---CCTTCCEEEECSCC-CCCCCC---CCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSS-CCSC
T ss_pred             CCCc-CCcCCC---CCCCCCEEECcCCc-CCCCCC---CCCCcCEEECCCC-CCCcCCCC---CCCCCEEECcCC-cCCC
Confidence            9998 777876   57999999999987 777766   5789999999997 67778764   379999999996 5666


Q ss_pred             ccccccCCCCCceEEEeecCcCCC-CCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCccccc
Q 018478          189 LPKGLHNLKSLQKLTIGKGGLEED-GLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIR  267 (355)
Q Consensus       189 ~p~~l~~~~~L~~L~l~~~~i~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~  267 (355)
                      +|.   .+++|+.|+++.+.+... ..+++|+.|++++|... .++       ...++|+.|++++  +.+..++.    
T Consensus       156 l~~---~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~-~l~-------~~~~~L~~L~L~~--N~l~~l~~----  218 (622)
T 3g06_A          156 LPA---LPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLA-SLP-------TLPSELYKLWAYN--NRLTSLPA----  218 (622)
T ss_dssp             CCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-CCC-------CCCTTCCEEECCS--SCCSSCCC----
T ss_pred             cCC---ccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCC-CCC-------CccchhhEEECcC--CcccccCC----
Confidence            664   356899999984444432 45689999999998743 222       2357999999998  56777774    


Q ss_pred             cCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEeeCCCCCCcccCCCCCCCCccEEEecCCc
Q 018478          268 MGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPEKGLPSSLLELWIGGCP  334 (355)
Q Consensus       268 ~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~  334 (355)
                            .+++|+.|++++ +.++.+|   ..+++|++|++++| +++.+|.  .+++|++|++.+|.
T Consensus       219 ------~~~~L~~L~Ls~-N~L~~lp---~~l~~L~~L~Ls~N-~L~~lp~--~~~~L~~L~Ls~N~  272 (622)
T 3g06_A          219 ------LPSGLKELIVSG-NRLTSLP---VLPSELKELMVSGN-RLTSLPM--LPSGLLSLSVYRNQ  272 (622)
T ss_dssp             ------CCTTCCEEECCS-SCCSCCC---CCCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSC
T ss_pred             ------CCCCCCEEEccC-CccCcCC---CCCCcCcEEECCCC-CCCcCCc--ccccCcEEeCCCCC
Confidence                  457999999998 6888888   67899999999998 8999987  67999999999884

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.80  E-value=1.6e-20  Score=168.25  Aligned_cols=261  Identities=13%  Similarity=0.082  Sum_probs=164.9

Q ss_pred             CCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccccchhccccccCCCCCcccEEEE
Q 018478           29 RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRV  108 (355)
Q Consensus        29 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~~~~~~L~~L~l  108 (355)
                      ++|++|+++++ .+..++...           +..+++|++|+++++. ++..             +....+++|++|++
T Consensus        34 ~~L~~L~L~~n-~l~~~~~~~-----------~~~l~~L~~L~Ls~n~-l~~~-------------~~~~~l~~L~~L~L   87 (317)
T 3o53_A           34 WNVKELDLSGN-PLSQISAAD-----------LAPFTKLELLNLSSNV-LYET-------------LDLESLSTLRTLDL   87 (317)
T ss_dssp             GGCSEEECTTS-CCCCCCHHH-----------HTTCTTCCEEECTTSC-CEEE-------------EEETTCTTCCEEEC
T ss_pred             CCCCEEECcCC-ccCcCCHHH-----------hhCCCcCCEEECCCCc-CCcc-------------hhhhhcCCCCEEEC
Confidence            68888888884 566665432           4558888888888763 3433             22344578888888


Q ss_pred             ccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCC-CCCCCCCCcceEEEccccCcC
Q 018478          109 QGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFP-EGGLPCAKLKEVVIRWCGRLE  187 (355)
Q Consensus       109 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~  187 (355)
                      ++|. +..++.    .++|++|++++|. +..++..  .+++|+.|++++| .+..++ ..+..+++|+.|++++|....
T Consensus        88 s~n~-l~~l~~----~~~L~~L~l~~n~-l~~~~~~--~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  158 (317)
T 3o53_A           88 NNNY-VQELLV----GPSIETLHAANNN-ISRVSCS--RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDT  158 (317)
T ss_dssp             CSSE-EEEEEE----CTTCCEEECCSSC-CSEEEEC--CCSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSCCCE
T ss_pred             cCCc-cccccC----CCCcCEEECCCCc-cCCcCcc--ccCCCCEEECCCC-CCCCccchhhhccCCCCEEECCCCCCCc
Confidence            8887 665543    4888888888877 5555432  3678888888887 455543 456667888888888865433


Q ss_pred             cccccc-cCCCCCceEEEeecC---cCCCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCc
Q 018478          188 ALPKGL-HNLKSLQKLTIGKGG---LEEDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPP  263 (355)
Q Consensus       188 ~~p~~l-~~~~~L~~L~l~~~~---i~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  263 (355)
                      ..+..+ ..+++|++|+++.+.   ++....+++|+.|++++|... ..+..    +..+++|++|++++  +.++.+|.
T Consensus       159 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~----~~~l~~L~~L~L~~--N~l~~l~~  231 (317)
T 3o53_A          159 VNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLA-FMGPE----FQSAAGVTWISLRN--NKLVLIEK  231 (317)
T ss_dssp             EEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCC-EECGG----GGGGTTCSEEECTT--SCCCEECT
T ss_pred             ccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCC-cchhh----hcccCcccEEECcC--Ccccchhh
Confidence            334444 467888888887333   333445677888888777643 23221    55667788888877  46666666


Q ss_pred             cccccCCCCCCCCccceEEeccCCCcc--cccccCCCCCCccEEeeCCCCCCcccCCCCC-CCCccEEEecCCchhhHh
Q 018478          264 EDIRMGTTLPLPTSLTSLAIFSFPNLE--RLSSSIVDLQNLTSLYLVGCPKLKYFPEKGL-PSSLLELWIGGCPLIEEK  339 (355)
Q Consensus       264 ~~~~~~~~~~~~~~L~~L~l~~~~~l~--~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~L~~L~l~~c~~l~~~  339 (355)
                      .+       ..+++|+.|+++++ .+.  .++.++..+++|+.+++.++..++..+.... .+.+....-..|..+...
T Consensus       232 ~~-------~~l~~L~~L~l~~N-~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~cc~~l~~~  302 (317)
T 3o53_A          232 AL-------RFSQNLEHFDLRGN-GFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAP  302 (317)
T ss_dssp             TC-------CCCTTCCEEECTTC-CCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCCCSSTTCEEETTEEEBCCTTT
T ss_pred             Hh-------hcCCCCCEEEccCC-CccCcCHHHHHhccccceEEECCCchhccCCchhccCCCceecccceeeccCChh
Confidence            55       45677788888774 333  5556667777777777775544444433222 233333333345554443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.79  E-value=4.8e-20  Score=164.73  Aligned_cols=195  Identities=15%  Similarity=0.081  Sum_probs=103.7

Q ss_pred             CCCCcEEEeeccCCcCcccccc--cCCCCCceEeccccCCCcCCCCCCCCC-----CCcceEEEccccCcCcccccccCC
Q 018478          124 STSLETIHIFYCENMKILPSGL--HNLRQLQEISIEGCGNLESFPEGGLPC-----AKLKEVVIRWCGRLEALPKGLHNL  196 (355)
Q Consensus       124 l~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~l~~~~~~~~~~-----~~L~~L~l~~~~~~~~~p~~l~~~  196 (355)
                      +++|++|++++|.....+|..+  ..+++|+.|++++| .+...|..+..+     ++|++|++++|......|..++.+
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence            4455555555444222334333  44445555555444 233333322222     455555555433222222444555


Q ss_pred             CCCceEEEeecCcC-------CC--CCCCCccEEEecCCcchh--hhhhhhcccCCCCCccceeEecccCCcccccC-cc
Q 018478          197 KSLQKLTIGKGGLE-------ED--GLPTNLHSLDIRGNMEIW--KSMIEWGQGFHRFSSLRELRIEGCDDDMVSFP-PE  264 (355)
Q Consensus       197 ~~L~~L~l~~~~i~-------~~--~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~  264 (355)
                      ++|++|+++.+.+.       ..  ..+++|+.|++++|....  ..+.. .  +..+++|++|++++  +.+...+ ..
T Consensus       173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~--~~~l~~L~~L~Ls~--N~l~~~~~~~  247 (312)
T 1wwl_A          173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA-L--AAARVQLQGLDLSH--NSLRDAAGAP  247 (312)
T ss_dssp             SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHH-H--HHTTCCCSEEECTT--SCCCSSCCCS
T ss_pred             CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHH-H--HhcCCCCCEEECCC--CcCCcccchh
Confidence            55555555422211       11  344566777777765331  12211 1  45677888888887  4454433 11


Q ss_pred             ccccCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEeeCCCCCCcccCCCCCCCCccEEEecCCc
Q 018478          265 DIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPEKGLPSSLLELWIGGCP  334 (355)
Q Consensus       265 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~  334 (355)
                      .+      ..+++|++|++++ +.++.+|..+.  ++|++|++++| +++.+|....+++|++|++.+++
T Consensus       248 ~~------~~l~~L~~L~Ls~-N~l~~ip~~~~--~~L~~L~Ls~N-~l~~~p~~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          248 SC------DWPSQLNSLNLSF-TGLKQVPKGLP--AKLSVLDLSYN-RLDRNPSPDELPQVGNLSLKGNP  307 (312)
T ss_dssp             CC------CCCTTCCEEECTT-SCCSSCCSSCC--SEEEEEECCSS-CCCSCCCTTTSCEEEEEECTTCT
T ss_pred             hh------hhcCCCCEEECCC-CccChhhhhcc--CCceEEECCCC-CCCCChhHhhCCCCCEEeccCCC
Confidence            11      3457788888887 56777776544  77888888887 67777653346788888887765

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.79  E-value=8.6e-18  Score=164.05  Aligned_cols=60  Identities=20%  Similarity=0.069  Sum_probs=47.8

Q ss_pred             CCCCccceEEeccCCCcccc-cccCCCCCCccEEeeCCCCCCcccCCCCC--CCCccEEEecCCc
Q 018478          273 PLPTSLTSLAIFSFPNLERL-SSSIVDLQNLTSLYLVGCPKLKYFPEKGL--PSSLLELWIGGCP  334 (355)
Q Consensus       273 ~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~--~~~L~~L~l~~c~  334 (355)
                      ..+++|++|++++ +.++.+ |..+.++++|++|++++| +++.++...+  +++|++|+++++.
T Consensus       491 ~~l~~L~~L~Ls~-N~L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~  553 (635)
T 4g8a_A          491 TELRNLTFLDLSQ-CQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNH  553 (635)
T ss_dssp             TTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTSC
T ss_pred             hhccccCEEECCC-CccCCcChHHHcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCCc
Confidence            5667899999998 467766 456788999999999998 7888876543  6899999998874

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.78  E-value=2.1e-18  Score=151.91  Aligned_cols=167  Identities=19%  Similarity=0.250  Sum_probs=103.7

Q ss_pred             cEEeecccccCcccccCccCCCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccccc
Q 018478            9 EILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELS   88 (355)
Q Consensus         9 ~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~   88 (355)
                      +.+++++ ..++.+| ..++++|++|++++ +.+..++...           +..+++|++|+++++ .++.+       
T Consensus        14 ~~~~c~~-~~l~~ip-~~~~~~l~~L~l~~-n~i~~~~~~~-----------~~~~~~L~~L~l~~n-~l~~~-------   71 (285)
T 1ozn_A           14 VTTSCPQ-QGLQAVP-VGIPAASQRIFLHG-NRISHVPAAS-----------FRACRNLTILWLHSN-VLARI-------   71 (285)
T ss_dssp             CEEECCS-SCCSSCC-TTCCTTCSEEECTT-SCCCEECTTT-----------TTTCTTCCEEECCSS-CCCEE-------
T ss_pred             eEEEcCc-CCcccCC-cCCCCCceEEEeeC-CcCCccCHHH-----------cccCCCCCEEECCCC-cccee-------
Confidence            4555553 4566665 34567888888887 4466665433           455777888888765 33333       


Q ss_pred             hhcccccc--CCCCCcccEEEEccCcchhch-hhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCC
Q 018478           89 ATLESLEV--GNLPPSLKSLRVQGCSKLESI-AETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESF  165 (355)
Q Consensus        89 ~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~  165 (355)
                            ..  ...+++|+.|++++|..+..+ +..+..+++|++|++++|......+..+..+++|+.|++++| .+..+
T Consensus        72 ------~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~  144 (285)
T 1ozn_A           72 ------DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQAL  144 (285)
T ss_dssp             ------CTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCC
T ss_pred             ------CHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC-ccccc
Confidence                  21  233467788888777545554 556677778888888777733333556677777888888776 45555


Q ss_pred             CC-CCCCCCCcceEEEccccCcCcccc-cccCCCCCceEEEe
Q 018478          166 PE-GGLPCAKLKEVVIRWCGRLEALPK-GLHNLKSLQKLTIG  205 (355)
Q Consensus       166 ~~-~~~~~~~L~~L~l~~~~~~~~~p~-~l~~~~~L~~L~l~  205 (355)
                      +. .+..+++|+.|++++|. ++.++. .+..+++|++|+++
T Consensus       145 ~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~  185 (285)
T 1ozn_A          145 PDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLH  185 (285)
T ss_dssp             CTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECC
T ss_pred             CHhHhccCCCccEEECCCCc-ccccCHHHhcCccccCEEECC
Confidence            43 35567777777777753 444443 45666666666665

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.78  E-value=9.7e-20  Score=162.72  Aligned_cols=197  Identities=19%  Similarity=0.164  Sum_probs=151.5

Q ss_pred             CCcccEEEEccCcchhchhhhc--cCCCCCcEEEeeccCCcCcccccccCC-----CCCceEeccccCCCcCCC-CCCCC
Q 018478          100 PPSLKSLRVQGCSKLESIAETL--DNSTSLETIHIFYCENMKILPSGLHNL-----RQLQEISIEGCGNLESFP-EGGLP  171 (355)
Q Consensus       100 ~~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~l~~~~-~~~~~  171 (355)
                      +++|++|++++|.....+|..+  ..+++|++|++++|. +...|..++.+     ++|+.|++++| .+..++ ..+..
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~~  171 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVRV  171 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTCCC
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHhcc
Confidence            5789999999998334677665  789999999999988 55557666666     89999999998 455555 77888


Q ss_pred             CCCcceEEEccccCcCc--ccccc--cCCCCCceEEEeecCcCCC--------CCCCCccEEEecCCcchhhhhhhhccc
Q 018478          172 CAKLKEVVIRWCGRLEA--LPKGL--HNLKSLQKLTIGKGGLEED--------GLPTNLHSLDIRGNMEIWKSMIEWGQG  239 (355)
Q Consensus       172 ~~~L~~L~l~~~~~~~~--~p~~l--~~~~~L~~L~l~~~~i~~~--------~~~~~L~~L~l~~~~~~~~~~~~~~~~  239 (355)
                      +++|++|++++|.....  ++..+  ..+++|++|+++.+.+...        ..+++|+.|++++|......+.. .  
T Consensus       172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~--  248 (312)
T 1wwl_A          172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP-S--  248 (312)
T ss_dssp             CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCS-C--
T ss_pred             CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchh-h--
Confidence            99999999999764433  33444  8899999999986555521        24579999999998754433211 1  


Q ss_pred             CCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEeeCCCCCCcc
Q 018478          240 FHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKY  315 (355)
Q Consensus       240 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~  315 (355)
                      +..+++|++|++++  +.++.+|...        . ++|++|++++ +.++.+|. +..+++|++|++++| .++.
T Consensus       249 ~~~l~~L~~L~Ls~--N~l~~ip~~~--------~-~~L~~L~Ls~-N~l~~~p~-~~~l~~L~~L~L~~N-~l~~  310 (312)
T 1wwl_A          249 CDWPSQLNSLNLSF--TGLKQVPKGL--------P-AKLSVLDLSY-NRLDRNPS-PDELPQVGNLSLKGN-PFLD  310 (312)
T ss_dssp             CCCCTTCCEEECTT--SCCSSCCSSC--------C-SEEEEEECCS-SCCCSCCC-TTTSCEEEEEECTTC-TTTC
T ss_pred             hhhcCCCCEEECCC--CccChhhhhc--------c-CCceEEECCC-CCCCCChh-HhhCCCCCEEeccCC-CCCC
Confidence            56689999999998  5677888755        2 7999999998 68888876 888999999999998 5654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.78  E-value=5.1e-18  Score=149.48  Aligned_cols=130  Identities=18%  Similarity=0.285  Sum_probs=91.2

Q ss_pred             ccCCCCCcccEEEEccCcchhchh-hhccCCCCCcEEEeeccCCcCcc-cccccCCCCCceEeccccCCCcCC-CCCCCC
Q 018478           95 EVGNLPPSLKSLRVQGCSKLESIA-ETLDNSTSLETIHIFYCENMKIL-PSGLHNLRQLQEISIEGCGNLESF-PEGGLP  171 (355)
Q Consensus        95 ~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~  171 (355)
                      |. ..+++|+.|++++|. +..++ ..+..+++|++|++++|. +..+ +..+..+++|+.|++++|..+..+ |..+..
T Consensus        27 p~-~~~~~l~~L~l~~n~-i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~  103 (285)
T 1ozn_A           27 PV-GIPAASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG  103 (285)
T ss_dssp             CT-TCCTTCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTT
T ss_pred             Cc-CCCCCceEEEeeCCc-CCccCHHHcccCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcC
Confidence            54 345789999999987 66655 567889999999999887 4444 677888999999999988546666 566777


Q ss_pred             CCCcceEEEccccCcCcccccccCCCCCceEEEeecCcCC-----CCCCCCccEEEecCCc
Q 018478          172 CAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEE-----DGLPTNLHSLDIRGNM  227 (355)
Q Consensus       172 ~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~-----~~~~~~L~~L~l~~~~  227 (355)
                      +++|++|++++|......|..+..+++|++|+++.+.+..     ...+++|+.|++++|.
T Consensus       104 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  164 (285)
T 1ozn_A          104 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR  164 (285)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc
Confidence            8999999999875444445667777777777776332221     1223455555555543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.78  E-value=1.2e-18  Score=156.00  Aligned_cols=211  Identities=14%  Similarity=0.145  Sum_probs=136.3

Q ss_pred             CCCcccEEEEccCcchhch-hhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcce
Q 018478           99 LPPSLKSLRVQGCSKLESI-AETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKE  177 (355)
Q Consensus        99 ~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~  177 (355)
                      .+++|+.|++++|. +..+ |..+..+++|++|++++|. +...+. +..+++|+.|++++| .++.++.    .++|+.
T Consensus        32 ~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~l~~L~~L~Ls~n-~l~~l~~----~~~L~~  103 (317)
T 3o53_A           32 SAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNN-YVQELLV----GPSIET  103 (317)
T ss_dssp             TGGGCSEEECTTSC-CCCCCHHHHTTCTTCCEEECTTSC-CEEEEE-ETTCTTCCEEECCSS-EEEEEEE----CTTCCE
T ss_pred             cCCCCCEEECcCCc-cCcCCHHHhhCCCcCCEEECCCCc-CCcchh-hhhcCCCCEEECcCC-ccccccC----CCCcCE
Confidence            34577888888776 4443 4567777888888887776 443333 677777888888776 4554442    357778


Q ss_pred             EEEccccCcCcccccccCCCCCceEEEeecCcCC-----CCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEec
Q 018478          178 VVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEE-----DGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIE  252 (355)
Q Consensus       178 L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~-----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~  252 (355)
                      |++++|. ++.++.  ..+++|++|+++.+.+..     ...+++|+.|++++|......+..+   ...+++|++|+++
T Consensus       104 L~l~~n~-l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---~~~l~~L~~L~L~  177 (317)
T 3o53_A          104 LHAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL---AASSDTLEHLNLQ  177 (317)
T ss_dssp             EECCSSC-CSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGG---GGGTTTCCEEECT
T ss_pred             EECCCCc-cCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHH---hhccCcCCEEECC
Confidence            8777753 344332  235677777777443332     2235678888888776443222221   3456788888888


Q ss_pred             ccCCcccccCccccccCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEeeCCCCCCcccCCC-CCCCCccEEEec
Q 018478          253 GCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPEK-GLPSSLLELWIG  331 (355)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~  331 (355)
                      +  +.++.++...        .+++|++|++++ +.++.++..+..+++|++|++++| +++.+|.. ..+++|++|++.
T Consensus       178 ~--N~l~~~~~~~--------~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~  245 (317)
T 3o53_A          178 Y--NFIYDVKGQV--------VFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLR  245 (317)
T ss_dssp             T--SCCCEEECCC--------CCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECT
T ss_pred             C--CcCccccccc--------ccccCCEEECCC-CcCCcchhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEcc
Confidence            7  4555554322        467788888887 577777766777788888888887 67777653 225788888888


Q ss_pred             CCch
Q 018478          332 GCPL  335 (355)
Q Consensus       332 ~c~~  335 (355)
                      +++.
T Consensus       246 ~N~~  249 (317)
T 3o53_A          246 GNGF  249 (317)
T ss_dssp             TCCC
T ss_pred             CCCc
Confidence            7764

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.77  E-value=9.2e-18  Score=143.95  Aligned_cols=207  Identities=19%  Similarity=0.200  Sum_probs=145.3

Q ss_pred             ccCCCCCcccEEEEccCcchhchhh-hccCCCCCcEEEeeccCCcCcccc-cccCCCCCceEeccccCCCcCCC-CCCCC
Q 018478           95 EVGNLPPSLKSLRVQGCSKLESIAE-TLDNSTSLETIHIFYCENMKILPS-GLHNLRQLQEISIEGCGNLESFP-EGGLP  171 (355)
Q Consensus        95 ~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~-~~~~~  171 (355)
                      |.  .+++|+.|++++|. ++.+++ .+..+++|++|++++|..++.++. .+..+++|+.|++++|..++.++ ..+..
T Consensus        27 p~--~~~~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~  103 (239)
T 2xwt_C           27 PS--LPPSTQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKE  103 (239)
T ss_dssp             CC--CCTTCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEEC
T ss_pred             CC--CCCcccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCC
Confidence            65  55688888888877 666654 577788888888888764655553 67778888888888733566665 34566


Q ss_pred             CCCcceEEEccccCcCcccccccCCCCCceEEEeecCcCCCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccc-eeE
Q 018478          172 CAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEEDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLR-ELR  250 (355)
Q Consensus       172 ~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~-~L~  250 (355)
                      +++|+.|++++|. ++.+|. +..+++|+                .|+.|++++|..++.++...   +..+++|+ +|+
T Consensus       104 l~~L~~L~l~~n~-l~~lp~-~~~l~~L~----------------~L~~L~l~~N~~l~~i~~~~---~~~l~~L~~~L~  162 (239)
T 2xwt_C          104 LPLLKFLGIFNTG-LKMFPD-LTKVYSTD----------------IFFILEITDNPYMTSIPVNA---FQGLCNETLTLK  162 (239)
T ss_dssp             CTTCCEEEEEEEC-CCSCCC-CTTCCBCC----------------SEEEEEEESCTTCCEECTTT---TTTTBSSEEEEE
T ss_pred             CCCCCEEeCCCCC-Cccccc-cccccccc----------------cccEEECCCCcchhhcCccc---ccchhcceeEEE
Confidence            7788888888753 444554 55544444                12256667763344444322   77889999 999


Q ss_pred             ecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccccc-cCCCC-CCccEEeeCCCCCCcccCCCCCCCCccEE
Q 018478          251 IEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSS-SIVDL-QNLTSLYLVGCPKLKYFPEKGLPSSLLEL  328 (355)
Q Consensus       251 l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~L~~L  328 (355)
                      +++  +.++.++...+       ..++|++|+++++..++.++. .+..+ ++|++|++++| +++.+|.. .+++|+.|
T Consensus       163 l~~--n~l~~i~~~~~-------~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~-~~~~L~~L  231 (239)
T 2xwt_C          163 LYN--NGFTSVQGYAF-------NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSK-GLEHLKEL  231 (239)
T ss_dssp             CCS--CCCCEECTTTT-------TTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCT-TCTTCSEE
T ss_pred             cCC--CCCcccCHhhc-------CCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCChh-HhccCcee
Confidence            988  56778887552       336899999999546888864 46778 99999999998 79998875 56899999


Q ss_pred             EecCCchh
Q 018478          329 WIGGCPLI  336 (355)
Q Consensus       329 ~l~~c~~l  336 (355)
                      ++.+++.+
T Consensus       232 ~l~~~~~l  239 (239)
T 2xwt_C          232 IARNTWTL  239 (239)
T ss_dssp             ECTTC---
T ss_pred             eccCccCC
Confidence            99988753

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.74  E-value=2.1e-18  Score=163.27  Aligned_cols=230  Identities=13%  Similarity=0.094  Sum_probs=149.2

Q ss_pred             CCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccccchhccccccCCCCCcccEEEE
Q 018478           29 RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRV  108 (355)
Q Consensus        29 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~~~~~~L~~L~l  108 (355)
                      ++|++|+++++ .+..++...           +..+++|+.|+++++. ++..             +....+++|+.|++
T Consensus        34 ~~L~~L~Ls~n-~l~~~~~~~-----------~~~l~~L~~L~Ls~N~-l~~~-------------~~l~~l~~L~~L~L   87 (487)
T 3oja_A           34 WNVKELDLSGN-PLSQISAAD-----------LAPFTKLELLNLSSNV-LYET-------------LDLESLSTLRTLDL   87 (487)
T ss_dssp             GGCCEEECCSS-CCCCCCGGG-----------GTTCTTCCEEECTTSC-CEEE-------------EECTTCTTCCEEEC
T ss_pred             CCccEEEeeCC-cCCCCCHHH-----------HhCCCCCCEEEeeCCC-CCCC-------------cccccCCCCCEEEe
Confidence            57888888884 466655432           4568888888888764 4433             22445578888888


Q ss_pred             ccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCC-CCCCCCCCCcceEEEccccCcC
Q 018478          109 QGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESF-PEGGLPCAKLKEVVIRWCGRLE  187 (355)
Q Consensus       109 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~  187 (355)
                      ++|. +..+|.    .++|++|++++|. +..++.  ..+++|+.|++++| .+..+ |..+..+++|+.|++++|....
T Consensus        88 s~N~-l~~l~~----~~~L~~L~L~~N~-l~~~~~--~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  158 (487)
T 3oja_A           88 NNNY-VQELLV----GPSIETLHAANNN-ISRVSC--SRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDT  158 (487)
T ss_dssp             CSSE-EEEEEE----CTTCCEEECCSSC-CCCEEE--CCCSSCEEEECCSS-CCCSGGGBCGGGGSSEEEEECTTSCCCE
T ss_pred             cCCc-CCCCCC----CCCcCEEECcCCc-CCCCCc--cccCCCCEEECCCC-CCCCCCchhhcCCCCCCEEECCCCCCCC
Confidence            8886 666553    4788888888877 555443  24678888888887 44444 4566677888888888865444


Q ss_pred             ccccccc-CCCCCceEEEeecC---cCCCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCc
Q 018478          188 ALPKGLH-NLKSLQKLTIGKGG---LEEDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPP  263 (355)
Q Consensus       188 ~~p~~l~-~~~~L~~L~l~~~~---i~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  263 (355)
                      ..|..+. .+++|++|+++.+.   ++....+++|+.|++++|... ..++.    +..+++|+.|++++  +.+..+|.
T Consensus       159 ~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~----~~~l~~L~~L~Ls~--N~l~~lp~  231 (487)
T 3oja_A          159 VNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLA-FMGPE----FQSAAGVTWISLRN--NKLVLIEK  231 (487)
T ss_dssp             EEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCC-EECGG----GGGGTTCSEEECTT--SCCCEECT
T ss_pred             cChHHHhhhCCcccEEecCCCccccccccccCCCCCEEECCCCCCC-CCCHh----HcCCCCccEEEecC--CcCcccch
Confidence            4555654 67788888777333   333445677777777776533 23221    45667777777776  45556665


Q ss_pred             cccccCCCCCCCCccceEEeccCCCcc--cccccCCCCCCccEEeeC
Q 018478          264 EDIRMGTTLPLPTSLTSLAIFSFPNLE--RLSSSIVDLQNLTSLYLV  308 (355)
Q Consensus       264 ~~~~~~~~~~~~~~L~~L~l~~~~~l~--~l~~~~~~~~~L~~L~l~  308 (355)
                      .+       ..+++|+.|+++++ .+.  .+|.++..++.|+.+++.
T Consensus       232 ~l-------~~l~~L~~L~l~~N-~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          232 AL-------RFSQNLEHFDLRGN-GFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             TC-------CCCTTCCEEECTTC-CBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             hh-------ccCCCCCEEEcCCC-CCcCcchHHHHHhCCCCcEEecc
Confidence            54       45567777777774 333  455555666666666553

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.74  E-value=2.9e-17  Score=140.80  Aligned_cols=175  Identities=15%  Similarity=0.166  Sum_probs=88.5

Q ss_pred             CcccEEEEccCcchhchhh-hccCCCCCcEEEeeccCCcCccc-ccccCCCCCceEeccccCCCcCCCCCCCCCCCcc--
Q 018478          101 PSLKSLRVQGCSKLESIAE-TLDNSTSLETIHIFYCENMKILP-SGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLK--  176 (355)
Q Consensus       101 ~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~--  176 (355)
                      ++|+.|++++|..++.+++ .+..+++|++|++++|..++.++ ..+..+++|+.|++++| .++.+|. +..+++|+  
T Consensus        55 ~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n-~l~~lp~-~~~l~~L~~L  132 (239)
T 2xwt_C           55 PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT-GLKMFPD-LTKVYSTDIF  132 (239)
T ss_dssp             TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEE-CCCSCCC-CTTCCBCCSE
T ss_pred             CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCC-CCccccc-cccccccccc
Confidence            4555555555533443332 34555666666665522244443 34555666666666655 3444554 44555555  


Q ss_pred             -eEEEccccCcCcccc-cccCCCCCc-eEEEeecCcCCCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecc
Q 018478          177 -EVVIRWCGRLEALPK-GLHNLKSLQ-KLTIGKGGLEEDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEG  253 (355)
Q Consensus       177 -~L~l~~~~~~~~~p~-~l~~~~~L~-~L~l~~~~i~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  253 (355)
                       .|++++|..++.+|. .+..+++|+ +|++                   ++|... .++.. .  +.. ++|++|++++
T Consensus       133 ~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l-------------------~~n~l~-~i~~~-~--~~~-~~L~~L~L~~  188 (239)
T 2xwt_C          133 FILEITDNPYMTSIPVNAFQGLCNETLTLKL-------------------YNNGFT-SVQGY-A--FNG-TKLDAVYLNK  188 (239)
T ss_dssp             EEEEEESCTTCCEECTTTTTTTBSSEEEEEC-------------------CSCCCC-EECTT-T--TTT-CEEEEEECTT
T ss_pred             cEEECCCCcchhhcCcccccchhcceeEEEc-------------------CCCCCc-ccCHh-h--cCC-CCCCEEEcCC
Confidence             666666534444443 345555555 4444                   332211 11111 1  223 5566666665


Q ss_pred             cCCcccccCccccccCCCCCCC-CccceEEeccCCCcccccccCCCCCCccEEeeCCCC
Q 018478          254 CDDDMVSFPPEDIRMGTTLPLP-TSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCP  311 (355)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~  311 (355)
                       +..++.++...+      ... ++|+.|++++ +.++.+|.  ..+++|+.|++.++.
T Consensus       189 -n~~l~~i~~~~~------~~l~~~L~~L~l~~-N~l~~l~~--~~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          189 -NKYLTVIDKDAF------GGVYSGPSLLDVSQ-TSVTALPS--KGLEHLKELIARNTW  237 (239)
T ss_dssp             -CTTCCEECTTTT------TTCSBCCSEEECTT-CCCCCCCC--TTCTTCSEEECTTC-
T ss_pred             -CCCcccCCHHHh------hccccCCcEEECCC-CccccCCh--hHhccCceeeccCcc
Confidence             223555544332      334 5666777766 56666665  356777777776653

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.74  E-value=1.3e-17  Score=157.86  Aligned_cols=209  Identities=14%  Similarity=0.150  Sum_probs=113.2

Q ss_pred             CcccEEEEccCcchhch-hhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEE
Q 018478          101 PSLKSLRVQGCSKLESI-AETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVV  179 (355)
Q Consensus       101 ~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~  179 (355)
                      ++|+.|++++|. +..+ |..+..+++|++|++++|. +...+. +..+++|+.|++++| .++.+|.    .++|+.|+
T Consensus        34 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~----~~~L~~L~  105 (487)
T 3oja_A           34 WNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNN-YVQELLV----GPSIETLH  105 (487)
T ss_dssp             GGCCEEECCSSC-CCCCCGGGGTTCTTCCEEECTTSC-CEEEEE-CTTCTTCCEEECCSS-EEEEEEE----CTTCCEEE
T ss_pred             CCccEEEeeCCc-CCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc-cccCCCCCEEEecCC-cCCCCCC----CCCcCEEE
Confidence            456666666655 3333 3455566666666666655 332222 555666666666665 3444432    24666666


Q ss_pred             EccccCcCcccccccCCCCCceEEEeecCcCC-----CCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEeccc
Q 018478          180 IRWCGRLEALPKGLHNLKSLQKLTIGKGGLEE-----DGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGC  254 (355)
Q Consensus       180 l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~-----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~  254 (355)
                      +++|. ++.++.  ..+++|+.|+++.+.+..     .+.+++|+.|++++|......+..+   ...+++|++|++++ 
T Consensus       106 L~~N~-l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l---~~~l~~L~~L~Ls~-  178 (487)
T 3oja_A          106 AANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL---AASSDTLEHLNLQY-  178 (487)
T ss_dssp             CCSSC-CCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGG---GGGTTTCCEEECTT-
T ss_pred             CcCCc-CCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHH---hhhCCcccEEecCC-
Confidence            66643 233222  234556666665333322     1234566666666665333222211   23566677777766 


Q ss_pred             CCcccccCccccccCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEeeCCCCCCcccCCC-CCCCCccEEEecCC
Q 018478          255 DDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPEK-GLPSSLLELWIGGC  333 (355)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~c  333 (355)
                       +.+..++...        .+++|+.|++++ +.++.+|..+..+++|+.|++++| +++.+|.. ..+++|++|++.+|
T Consensus       179 -N~l~~~~~~~--------~l~~L~~L~Ls~-N~l~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N  247 (487)
T 3oja_A          179 -NFIYDVKGQV--------VFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGN  247 (487)
T ss_dssp             -SCCCEEECCC--------CCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTC
T ss_pred             -Cccccccccc--------cCCCCCEEECCC-CCCCCCCHhHcCCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCC
Confidence             3444443322        456677777776 466666665666677777777766 56666553 22566777777666


Q ss_pred             ch
Q 018478          334 PL  335 (355)
Q Consensus       334 ~~  335 (355)
                      +.
T Consensus       248 ~l  249 (487)
T 3oja_A          248 GF  249 (487)
T ss_dssp             CB
T ss_pred             CC
Confidence            53

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.73  E-value=1.3e-16  Score=144.74  Aligned_cols=238  Identities=20%  Similarity=0.174  Sum_probs=129.5

Q ss_pred             cEEeecccccCcccccCccCCCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccccc
Q 018478            9 EILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELS   88 (355)
Q Consensus         9 ~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~   88 (355)
                      +.++.++ .+++++| ..+++++++|++++ ++++.++...           |..+++|++|+++++...+.+       
T Consensus        12 ~~v~C~~-~~Lt~iP-~~l~~~l~~L~Ls~-N~i~~i~~~~-----------f~~l~~L~~L~Ls~N~i~~~i-------   70 (350)
T 4ay9_X           12 RVFLCQE-SKVTEIP-SDLPRNAIELRFVL-TKLRVIQKGA-----------FSGFGDLEKIEISQNDVLEVI-------   70 (350)
T ss_dssp             TEEEEES-TTCCSCC-TTCCTTCSEEEEES-CCCSEECTTS-----------STTCTTCCEEEEECCTTCCEE-------
T ss_pred             CEEEecC-CCCCccC-cCcCCCCCEEEccC-CcCCCcCHHH-----------HcCCCCCCEEECcCCCCCCcc-------
Confidence            3444442 3566666 34556777777777 5567666543           455677777777765444444       


Q ss_pred             hhccccccC--CCCCcccEEEEccCcchhch-hhhccCCCCCcEEEeeccCCcCccc-ccccCCCCCceEeccccCCCcC
Q 018478           89 ATLESLEVG--NLPPSLKSLRVQGCSKLESI-AETLDNSTSLETIHIFYCENMKILP-SGLHNLRQLQEISIEGCGNLES  164 (355)
Q Consensus        89 ~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~  164 (355)
                            +..  ..+++++.+....+..+..+ |..+..+++|++|++++|. +..++ ..+....++..+++.++..+..
T Consensus        71 ------~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~  143 (350)
T 4ay9_X           71 ------EADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHT  143 (350)
T ss_dssp             ------CTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCE
T ss_pred             ------ChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccc-cccCCchhhcccchhhhhhhcccccccc
Confidence                  322  22234444333322225554 3445666677777766665 44333 2333344555566655444555


Q ss_pred             CCCC-CCCC-CCcceEEEccccCcCcccccccCCCCCceEEEeecCcCCCCCCCCccEEEecCCcchhhhhhhhcccCCC
Q 018478          165 FPEG-GLPC-AKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEEDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHR  242 (355)
Q Consensus       165 ~~~~-~~~~-~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  242 (355)
                      ++.. +..+ ..++.|++++| .++.++.......                   +++.+++.++..++.++.+.   +..
T Consensus       144 l~~~~f~~~~~~l~~L~L~~N-~i~~i~~~~f~~~-------------------~L~~l~l~~~n~l~~i~~~~---f~~  200 (350)
T 4ay9_X          144 IERNSFVGLSFESVILWLNKN-GIQEIHNSAFNGT-------------------QLDELNLSDNNNLEELPNDV---FHG  200 (350)
T ss_dssp             ECTTSSTTSBSSCEEEECCSS-CCCEECTTSSTTE-------------------EEEEEECTTCTTCCCCCTTT---TTT
T ss_pred             ccccchhhcchhhhhhccccc-cccCCChhhcccc-------------------chhHHhhccCCcccCCCHHH---hcc
Confidence            4432 2222 34555666653 3444443333333                   45555555555455444332   566


Q ss_pred             CCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEeeCC
Q 018478          243 FSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVG  309 (355)
Q Consensus       243 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~  309 (355)
                      +++|++|++++  +.++.+|..         .+.+|+.|.+.++++++.+|. +..+++|+.+++.+
T Consensus       201 l~~L~~LdLs~--N~l~~lp~~---------~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          201 ASGPVILDISR--TRIHSLPSY---------GLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTY  255 (350)
T ss_dssp             EECCSEEECTT--SCCCCCCSS---------SCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred             CcccchhhcCC--CCcCccChh---------hhccchHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence            77777777776  566677652         245677777776677777763 56677777777654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.73  E-value=1.7e-16  Score=139.99  Aligned_cols=192  Identities=19%  Similarity=0.175  Sum_probs=135.4

Q ss_pred             cccccccEEEecCCCccchhccccccchhccccccCCCCCcccEEEEccCcchhch-hhhccCCCCCcEEEeeccCCcCc
Q 018478           62 YTSYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESI-AETLDNSTSLETIHIFYCENMKI  140 (355)
Q Consensus        62 ~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~  140 (355)
                      ..+++++++++.+. .++.+             |.. .+++++.|++++|. +..+ +..+..+++|++|++++|. ++.
T Consensus         7 ~~l~~l~~l~~~~~-~l~~i-------------p~~-~~~~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~   69 (290)
T 1p9a_G            7 SKVASHLEVNCDKR-NLTAL-------------PPD-LPKDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRAE-LTK   69 (290)
T ss_dssp             ECSTTCCEEECTTS-CCSSC-------------CSC-CCTTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTSC-CCE
T ss_pred             cccCCccEEECCCC-CCCcC-------------CCC-CCCCCCEEEcCCCc-CCccCHHHhhcCCCCCEEECCCCc-cCc
Confidence            44778899988874 56666             543 44789999999988 5544 5678889999999999987 666


Q ss_pred             ccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEccccCcCccc-ccccCCCCCceEEEeecCcC---C--CCC
Q 018478          141 LPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEALP-KGLHNLKSLQKLTIGKGGLE---E--DGL  214 (355)
Q Consensus       141 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~p-~~l~~~~~L~~L~l~~~~i~---~--~~~  214 (355)
                      ++.. +.+++|+.|++++| .++.+|..+..+++|+.|++++|. ++.+| ..+..+++|++|+++.+.+.   .  ...
T Consensus        70 ~~~~-~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  146 (290)
T 1p9a_G           70 LQVD-GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP  146 (290)
T ss_dssp             EECC-SCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred             ccCC-CCCCcCCEEECCCC-cCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCCccChhhccc
Confidence            6553 78899999999987 678888888889999999999964 45554 56788888888888733332   2  123


Q ss_pred             CCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccC
Q 018478          215 PTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSF  286 (355)
Q Consensus       215 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  286 (355)
                      +++|+.|++++|... .++...   +..+++|++|++++  +.++.+|...       ....+|+.++++++
T Consensus       147 l~~L~~L~L~~N~l~-~l~~~~---~~~l~~L~~L~L~~--N~l~~ip~~~-------~~~~~L~~l~L~~N  205 (290)
T 1p9a_G          147 TPKLEKLSLANNNLT-ELPAGL---LNGLENLDTLLLQE--NSLYTIPKGF-------FGSHLLPFAFLHGN  205 (290)
T ss_dssp             CTTCCEEECTTSCCS-CCCTTT---TTTCTTCCEEECCS--SCCCCCCTTT-------TTTCCCSEEECCSC
T ss_pred             ccCCCEEECCCCcCC-ccCHHH---hcCcCCCCEEECCC--CcCCccChhh-------cccccCCeEEeCCC
Confidence            466777777766533 233221   45666777777766  5566666655       24446666776653

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.72  E-value=3.4e-16  Score=141.94  Aligned_cols=220  Identities=22%  Similarity=0.214  Sum_probs=167.8

Q ss_pred             ccCCCCCcccEEEEccCcchhchhh-hccCCCCCcEEEeeccCCcCcccc-cccCCCCCceEeccccCCCcCCC-CCCCC
Q 018478           95 EVGNLPPSLKSLRVQGCSKLESIAE-TLDNSTSLETIHIFYCENMKILPS-GLHNLRQLQEISIEGCGNLESFP-EGGLP  171 (355)
Q Consensus        95 ~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~-~~~~~  171 (355)
                      |. ..+++++.|++++|. ++.+|+ .|.++++|++|++++|...+.++. .+.++++++.+...++..+..++ ..+..
T Consensus        25 P~-~l~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~  102 (350)
T 4ay9_X           25 PS-DLPRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQN  102 (350)
T ss_dssp             CT-TCCTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCC
T ss_pred             Cc-CcCCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhh
Confidence            64 345789999999987 888875 578899999999999986676663 56788888876655555777775 56677


Q ss_pred             CCCcceEEEccccCcCccc-ccccCCCCCceEEEe----ecCcCCC---CCCCCccEEEecCCcchhhhhhhhcccCCCC
Q 018478          172 CAKLKEVVIRWCGRLEALP-KGLHNLKSLQKLTIG----KGGLEED---GLPTNLHSLDIRGNMEIWKSMIEWGQGFHRF  243 (355)
Q Consensus       172 ~~~L~~L~l~~~~~~~~~p-~~l~~~~~L~~L~l~----~~~i~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l  243 (355)
                      +++|+.|++++|. ++.+| ..+....++..+++.    ...++..   .....++.|++++|... .++..    +...
T Consensus       103 l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~----~f~~  176 (350)
T 4ay9_X          103 LPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNS----AFNG  176 (350)
T ss_dssp             CTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTT----SSTT
T ss_pred             ccccccccccccc-cccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChh----hccc
Confidence            9999999999964 45554 345566677778776    2233332   23357889999998743 34332    3355


Q ss_pred             CccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEeeCCCCCCcccCCCCCCC
Q 018478          244 SSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPEKGLPS  323 (355)
Q Consensus       244 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  323 (355)
                      .+|+++++.+ ++.++.+|.+.+      ..+++|++|++++ +.++.+|.  ..+.+|++|.+.++.+++.+|.-.-++
T Consensus       177 ~~L~~l~l~~-~n~l~~i~~~~f------~~l~~L~~LdLs~-N~l~~lp~--~~~~~L~~L~~l~~~~l~~lP~l~~l~  246 (350)
T 4ay9_X          177 TQLDELNLSD-NNNLEELPNDVF------HGASGPVILDISR-TRIHSLPS--YGLENLKKLRARSTYNLKKLPTLEKLV  246 (350)
T ss_dssp             EEEEEEECTT-CTTCCCCCTTTT------TTEECCSEEECTT-SCCCCCCS--SSCTTCCEEECTTCTTCCCCCCTTTCC
T ss_pred             cchhHHhhcc-CCcccCCCHHHh------ccCcccchhhcCC-CCcCccCh--hhhccchHhhhccCCCcCcCCCchhCc
Confidence            7899999998 788999997653      5678999999999 68999997  668899999999999999999755579


Q ss_pred             CccEEEecC
Q 018478          324 SLLELWIGG  332 (355)
Q Consensus       324 ~L~~L~l~~  332 (355)
                      +|+.+++.+
T Consensus       247 ~L~~l~l~~  255 (350)
T 4ay9_X          247 ALMEASLTY  255 (350)
T ss_dssp             SCCEEECSC
T ss_pred             ChhhCcCCC
Confidence            999999864

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.72  E-value=1.6e-16  Score=140.21  Aligned_cols=194  Identities=23%  Similarity=0.303  Sum_probs=148.8

Q ss_pred             CCCCCCccEEeecccccCcccccCccCCCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchh
Q 018478            2 CDTNSSLEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSI   81 (355)
Q Consensus         2 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~   81 (355)
                      ++++++++++++.+ ..++.+| ..+++++++|++++ +.+..++...           +..+++|++|+++++ .++.+
T Consensus         6 ~~~l~~l~~l~~~~-~~l~~ip-~~~~~~l~~L~L~~-N~l~~~~~~~-----------~~~l~~L~~L~L~~n-~l~~~   70 (290)
T 1p9a_G            6 VSKVASHLEVNCDK-RNLTALP-PDLPKDTTILHLSE-NLLYTFSLAT-----------LMPYTRLTQLNLDRA-ELTKL   70 (290)
T ss_dssp             EECSTTCCEEECTT-SCCSSCC-SCCCTTCCEEECTT-SCCSEEEGGG-----------GTTCTTCCEEECTTS-CCCEE
T ss_pred             ccccCCccEEECCC-CCCCcCC-CCCCCCCCEEEcCC-CcCCccCHHH-----------hhcCCCCCEEECCCC-ccCcc
Confidence            35789999999985 5788887 44568999999999 4577666543           566899999999985 56666


Q ss_pred             ccccccchhccccccCCCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCccc-ccccCCCCCceEeccccC
Q 018478           82 FSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILP-SGLHNLRQLQEISIEGCG  160 (355)
Q Consensus        82 ~~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~  160 (355)
                                   +....+++|+.|++++|. +..+|..+..+++|++|++++|. ++.++ ..+..+++|+.|++++| 
T Consensus        71 -------------~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N-  134 (290)
T 1p9a_G           71 -------------QVDGTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGN-  134 (290)
T ss_dssp             -------------ECCSCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTS-
T ss_pred             -------------cCCCCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCC-
Confidence                         555667899999999987 78888888889999999999988 55655 66888999999999997 


Q ss_pred             CCcCCCCC-CCCCCCcceEEEccccCcCcccc-cccCCCCCceEEEeecCcC---CC-CCCCCccEEEecCCc
Q 018478          161 NLESFPEG-GLPCAKLKEVVIRWCGRLEALPK-GLHNLKSLQKLTIGKGGLE---ED-GLPTNLHSLDIRGNM  227 (355)
Q Consensus       161 ~l~~~~~~-~~~~~~L~~L~l~~~~~~~~~p~-~l~~~~~L~~L~l~~~~i~---~~-~~~~~L~~L~l~~~~  227 (355)
                      .++.+|.. +..+++|+.|++++| .++.+|. .+..+++|++|+++.+.+.   .. ....+|+.+++.+|+
T Consensus       135 ~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          135 ELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             CCCccChhhcccccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence            66677654 567899999999996 4566664 4577888888888744333   21 223567777777664

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.71  E-value=1.1e-16  Score=140.22  Aligned_cols=195  Identities=18%  Similarity=0.209  Sum_probs=111.5

Q ss_pred             CCCcccEEEEccCcchhchhh-hccCCCCCcEEEeeccCCcCccc-ccccCCCCCceEeccccCCCcCCC-CCCCCCCCc
Q 018478           99 LPPSLKSLRVQGCSKLESIAE-TLDNSTSLETIHIFYCENMKILP-SGLHNLRQLQEISIEGCGNLESFP-EGGLPCAKL  175 (355)
Q Consensus        99 ~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L  175 (355)
                      .+++|+.|++++|. +..++. .+..+++|++|++++|. +..++ ..+..+++|+.|++++| .+..++ ..+..+++|
T Consensus        26 l~~~l~~L~ls~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L  102 (276)
T 2z62_A           26 LPFSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSL  102 (276)
T ss_dssp             SCTTCCEEECTTCC-CCEECTTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTC
T ss_pred             CCCCccEEECCCCc-ccccCHhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCC-ccCccChhhhcCCccc
Confidence            34567888887776 555543 56777788888887776 44443 45677777888888776 344443 556667778


Q ss_pred             ceEEEccccCcCcccccccCCCCCceEEEeecCcCC------CCCCCCccEEEecCCcchhhhhhhhcccCCCCCccc--
Q 018478          176 KEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEE------DGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLR--  247 (355)
Q Consensus       176 ~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~--  247 (355)
                      +.|++++|......+..+..+++|++|+++.+.+..      ...+++|+.|++++|.... .+...   +..+++|+  
T Consensus       103 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~-~~~~~---~~~l~~L~~l  178 (276)
T 2z62_A          103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTD---LRVLHQMPLL  178 (276)
T ss_dssp             CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE-ECGGG---GHHHHTCTTC
T ss_pred             cEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc-CCHHH---hhhhhhcccc
Confidence            888877754333222356666777777666333322      1233556666666654322 11111   22223333  


Q ss_pred             --eeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCccccccc-CCCCCCccEEeeCCC
Q 018478          248 --ELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSS-IVDLQNLTSLYLVGC  310 (355)
Q Consensus       248 --~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~~~  310 (355)
                        +|++++  +.+..++...       ....+|++|++++ +.++.+|.. +..+++|++|++++|
T Consensus       179 ~l~L~ls~--n~l~~~~~~~-------~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~N  234 (276)
T 2z62_A          179 NLSLDLSL--NPMNFIQPGA-------FKEIRLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTN  234 (276)
T ss_dssp             CEEEECCS--SCCCEECTTS-------SCSCCEEEEECCS-SCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred             ceeeecCC--CcccccCccc-------cCCCcccEEECCC-CceeecCHhHhcccccccEEEccCC
Confidence              566665  4555555444       2333666667666 456655543 355666666666665

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.70  E-value=6.5e-16  Score=134.90  Aligned_cols=176  Identities=22%  Similarity=0.272  Sum_probs=89.7

Q ss_pred             CcccEEEEccCcchhchh-hhccCCCCCcEEEeeccCCcCcccc-cccCCCCCceEeccccCCCcCCCC-CCCCCCCcce
Q 018478          101 PSLKSLRVQGCSKLESIA-ETLDNSTSLETIHIFYCENMKILPS-GLHNLRQLQEISIEGCGNLESFPE-GGLPCAKLKE  177 (355)
Q Consensus       101 ~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~  177 (355)
                      ++++.|++++|. +..++ ..+..+++|++|++++|. ++.++. .+..+++|+.|++++| .+..+|. .+..+++|+.
T Consensus        37 ~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~  113 (270)
T 2o6q_A           37 ADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDN-KLQALPIGVFDQLVNLAE  113 (270)
T ss_dssp             TTCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCSS-CCCCCCTTTTTTCSSCCE
T ss_pred             CCCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCCC-cCCcCCHhHcccccCCCE
Confidence            455666665554 44443 245555566666655554 334432 2344555555555554 3344432 2344555555


Q ss_pred             EEEccccCcCcccccccCCCCCceEEEeecCcCCCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCc
Q 018478          178 VVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEEDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDD  257 (355)
Q Consensus       178 L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  257 (355)
                      |++++|......+..+..+                   ++|+.|++++|... ..+.. .  +..+++|++|++++  +.
T Consensus       114 L~l~~n~l~~~~~~~~~~l-------------------~~L~~L~Ls~n~l~-~~~~~-~--~~~l~~L~~L~L~~--n~  168 (270)
T 2o6q_A          114 LRLDRNQLKSLPPRVFDSL-------------------TKLTYLSLGYNELQ-SLPKG-V--FDKLTSLKELRLYN--NQ  168 (270)
T ss_dssp             EECCSSCCCCCCTTTTTTC-------------------TTCCEEECCSSCCC-CCCTT-T--TTTCTTCCEEECCS--SC
T ss_pred             EECCCCccCeeCHHHhCcC-------------------cCCCEEECCCCcCC-ccCHh-H--ccCCcccceeEecC--Cc
Confidence            5555532221111223333                   34444444554322 22221 1  55667777777776  45


Q ss_pred             ccccCccccccCCCCCCCCccceEEeccCCCccccccc-CCCCCCccEEeeCCCC
Q 018478          258 MVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSS-IVDLQNLTSLYLVGCP  311 (355)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~~~~  311 (355)
                      ++.++...+      ...++|++|++++ +.++.++.. +..+++|++|++++|+
T Consensus       169 l~~~~~~~~------~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          169 LKRVPEGAF------DKLTELKTLKLDN-NQLKRVPEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             CSCCCTTTT------TTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CcEeChhHh------ccCCCcCEEECCC-CcCCcCCHHHhccccCCCEEEecCCC
Confidence            555554321      3456777777776 456666543 4566777777777663

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.70  E-value=1e-16  Score=142.83  Aligned_cols=193  Identities=14%  Similarity=0.189  Sum_probs=119.0

Q ss_pred             cccccccEEEecCCCccchhccccccchhccccccCCCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcc
Q 018478           62 YTSYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKIL  141 (355)
Q Consensus        62 ~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  141 (355)
                      ..+++|++|++.++ .++.+             +....+++|+.|++++|. +..+++ +..+++|++|++++|. +..+
T Consensus        38 ~~l~~L~~L~l~~~-~i~~l-------------~~~~~l~~L~~L~L~~n~-i~~~~~-~~~l~~L~~L~L~~n~-l~~~  100 (308)
T 1h6u_A           38 ADLDGITTLSAFGT-GVTTI-------------EGVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGNP-LKNV  100 (308)
T ss_dssp             HHHHTCCEEECTTS-CCCCC-------------TTGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSCC-CSCC
T ss_pred             HHcCCcCEEEeeCC-CccCc-------------hhhhccCCCCEEEccCCc-CCCChh-HccCCCCCEEEccCCc-CCCc
Confidence            34888888888876 44555             444455788888888876 666666 7778888888888877 6665


Q ss_pred             cccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEccccCcCcccccccCCCCCceEEEeecCcC---CCCCCCCc
Q 018478          142 PSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLE---EDGLPTNL  218 (355)
Q Consensus       142 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~---~~~~~~~L  218 (355)
                      + .+..+++|+.|++++| .++.++. +..+++|+.|++++|. ++.++. +..+++|+.|+++.+.+.   ....+++|
T Consensus       101 ~-~~~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L  175 (308)
T 1h6u_A          101 S-AIAGLQSIKTLDLTST-QITDVTP-LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQVSDLTPLANLSKL  175 (308)
T ss_dssp             G-GGTTCTTCCEEECTTS-CCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTC
T ss_pred             h-hhcCCCCCCEEECCCC-CCCCchh-hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCCcCCCChhhcCCCCC
Confidence            4 5777888888888887 5566554 6667888888888853 444443 667777777766633222   23344555


Q ss_pred             cEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCccccc
Q 018478          219 HSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLS  293 (355)
Q Consensus       219 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~  293 (355)
                      +.|++++|... ..+.     +..+++|++|++++  +.+..+++ +       ..+++|+.|++++ +.++..|
T Consensus       176 ~~L~l~~n~l~-~~~~-----l~~l~~L~~L~L~~--N~l~~~~~-l-------~~l~~L~~L~l~~-N~i~~~~  233 (308)
T 1h6u_A          176 TTLKADDNKIS-DISP-----LASLPNLIEVHLKN--NQISDVSP-L-------ANTSNLFIVTLTN-QTITNQP  233 (308)
T ss_dssp             CEEECCSSCCC-CCGG-----GGGCTTCCEEECTT--SCCCBCGG-G-------TTCTTCCEEEEEE-EEEECCC
T ss_pred             CEEECCCCccC-cChh-----hcCCCCCCEEEccC--CccCcccc-c-------cCCCCCCEEEccC-CeeecCC
Confidence            56665555422 2221     34455555555555  33333332 2       2445555555555 3344333

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.69  E-value=3e-16  Score=137.45  Aligned_cols=210  Identities=21%  Similarity=0.232  Sum_probs=131.4

Q ss_pred             cCcccccCccCCCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccccchhcccccc-
Q 018478           18 SLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEV-   96 (355)
Q Consensus        18 ~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~-   96 (355)
                      .++.+| ..++++|++|+++++ .++.++...           +..+++|++|+++++ .++.+             +. 
T Consensus        18 ~l~~ip-~~l~~~l~~L~ls~n-~l~~~~~~~-----------~~~l~~L~~L~l~~n-~l~~~-------------~~~   70 (276)
T 2z62_A           18 NFYKIP-DNLPFSTKNLDLSFN-PLRHLGSYS-----------FFSFPELQVLDLSRC-EIQTI-------------EDG   70 (276)
T ss_dssp             CCSSCC-SSSCTTCCEEECTTC-CCCEECTTT-----------TTTCTTCSEEECTTC-CCCEE-------------CTT
T ss_pred             CccccC-CCCCCCccEEECCCC-cccccCHhH-----------hccccCCcEEECCCC-cCCcc-------------CHH
Confidence            355565 345678999999884 577666533           456888999999876 44444             32 


Q ss_pred             -CCCCCcccEEEEccCcchhchh-hhccCCCCCcEEEeeccCCcCccc-ccccCCCCCceEeccccCCCcC--CCCCCCC
Q 018478           97 -GNLPPSLKSLRVQGCSKLESIA-ETLDNSTSLETIHIFYCENMKILP-SGLHNLRQLQEISIEGCGNLES--FPEGGLP  171 (355)
Q Consensus        97 -~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~--~~~~~~~  171 (355)
                       ...+++|+.|++++|. +..++ ..+..+++|++|++++|. +..++ ..++.+++|+.|++++| .+..  +|..+..
T Consensus        71 ~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~~~~  147 (276)
T 2z62_A           71 AYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSN  147 (276)
T ss_dssp             TTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGG
T ss_pred             HccCCcCCCEEECCCCc-cCccChhhhcCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCC-ccceecCchhhcc
Confidence             2445788999998887 55444 567788889999888877 44443 36778888888888887 4444  5667777


Q ss_pred             CCCcceEEEccccCcCcccccccCCCCCceEEEeecCcCCCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEe
Q 018478          172 CAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEEDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRI  251 (355)
Q Consensus       172 ~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l  251 (355)
                      +++|+.|++++|......+..+..+++|+.+.+               .|++++|.... .+..    .....+|++|++
T Consensus       148 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l---------------~L~ls~n~l~~-~~~~----~~~~~~L~~L~L  207 (276)
T 2z62_A          148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL---------------SLDLSLNPMNF-IQPG----AFKEIRLKELAL  207 (276)
T ss_dssp             CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCE---------------EEECCSSCCCE-ECTT----SSCSCCEEEEEC
T ss_pred             CCCCCEEECCCCCCCcCCHHHhhhhhhccccce---------------eeecCCCcccc-cCcc----ccCCCcccEEEC
Confidence            888888888886433333345666655553221               34445544221 2211    122235666666


Q ss_pred             cccCCcccccCccccccCCCCCCCCccceEEecc
Q 018478          252 EGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFS  285 (355)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  285 (355)
                      ++  +.++.++.+.+      ...++|++|++++
T Consensus       208 ~~--n~l~~~~~~~~------~~l~~L~~L~l~~  233 (276)
T 2z62_A          208 DT--NQLKSVPDGIF------DRLTSLQKIWLHT  233 (276)
T ss_dssp             CS--SCCSCCCTTTT------TTCCSCCEEECCS
T ss_pred             CC--CceeecCHhHh------cccccccEEEccC
Confidence            66  34555554332      3455666666665

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.69  E-value=1.2e-15  Score=133.19  Aligned_cols=168  Identities=22%  Similarity=0.321  Sum_probs=101.0

Q ss_pred             CCccEEeecccccCcccccCccCCCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhcccc
Q 018478            6 SSLEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKN   85 (355)
Q Consensus         6 ~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n   85 (355)
                      +..+.+++++ ..++.+| ..+++++++|+++++ .+..++...           +..+++|++|+++++ .++.+    
T Consensus        16 ~~~~~l~~~~-~~l~~ip-~~~~~~l~~L~l~~n-~l~~~~~~~-----------~~~l~~L~~L~l~~n-~l~~i----   76 (270)
T 2o6q_A           16 NNKNSVDCSS-KKLTAIP-SNIPADTKKLDLQSN-KLSSLPSKA-----------FHRLTKLRLLYLNDN-KLQTL----   76 (270)
T ss_dssp             TTTTEEECTT-SCCSSCC-SCCCTTCSEEECCSS-CCSCCCTTS-----------SSSCTTCCEEECCSS-CCSCC----
T ss_pred             CCCCEEEccC-CCCCccC-CCCCCCCCEEECcCC-CCCeeCHHH-----------hcCCCCCCEEECCCC-ccCee----
Confidence            4566777764 4566665 345577777777773 466555432           455777777777764 34444    


Q ss_pred             ccchhccccccC--CCCCcccEEEEccCcchhchh-hhccCCCCCcEEEeeccCCcCcc-cccccCCCCCceEeccccCC
Q 018478           86 ELSATLESLEVG--NLPPSLKSLRVQGCSKLESIA-ETLDNSTSLETIHIFYCENMKIL-PSGLHNLRQLQEISIEGCGN  161 (355)
Q Consensus        86 ~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~  161 (355)
                               +..  ..+++|++|++++|. +..++ ..+..+++|++|++++|. +..+ +..+..+++|+.|++++| .
T Consensus        77 ---------~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~  144 (270)
T 2o6q_A           77 ---------PAGIFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYN-E  144 (270)
T ss_dssp             ---------CTTTTSSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-C
T ss_pred             ---------ChhhhcCCCCCCEEECCCCc-CCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCC-c
Confidence                     332  334677777777776 55544 345667777777777766 4333 344566777777777776 4


Q ss_pred             CcCCCCC-CCCCCCcceEEEccccCcCccc-ccccCCCCCceEEEe
Q 018478          162 LESFPEG-GLPCAKLKEVVIRWCGRLEALP-KGLHNLKSLQKLTIG  205 (355)
Q Consensus       162 l~~~~~~-~~~~~~L~~L~l~~~~~~~~~p-~~l~~~~~L~~L~l~  205 (355)
                      ++.+|.. +..+++|+.|++++|. ++.++ ..+..+++|++|+++
T Consensus       145 l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~  189 (270)
T 2o6q_A          145 LQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAFDKLTELKTLKLD  189 (270)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECC
T ss_pred             CCccCHhHccCCcccceeEecCCc-CcEeChhHhccCCCcCEEECC
Confidence            5555543 4556777777777653 33333 345556655555554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.68  E-value=2.6e-16  Score=140.12  Aligned_cols=192  Identities=17%  Similarity=0.210  Sum_probs=152.3

Q ss_pred             CCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEE
Q 018478          100 PPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVV  179 (355)
Q Consensus       100 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~  179 (355)
                      +++|+.|++++|. +..++ .+..+++|++|++++|. +..++. +..+++|+.|++++| .++.++ .+..+++|+.|+
T Consensus        40 l~~L~~L~l~~~~-i~~l~-~~~~l~~L~~L~L~~n~-i~~~~~-~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~  113 (308)
T 1h6u_A           40 LDGITTLSAFGTG-VTTIE-GVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLD  113 (308)
T ss_dssp             HHTCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEE
T ss_pred             cCCcCEEEeeCCC-ccCch-hhhccCCCCEEEccCCc-CCCChh-HccCCCCCEEEccCC-cCCCch-hhcCCCCCCEEE
Confidence            4789999999987 77776 57789999999999987 777766 889999999999998 567665 577789999999


Q ss_pred             EccccCcCcccccccCCCCCceEEEeecCcC---CCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCC
Q 018478          180 IRWCGRLEALPKGLHNLKSLQKLTIGKGGLE---EDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDD  256 (355)
Q Consensus       180 l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  256 (355)
                      +++|. ++.++ .+..+++|++|+++.+.+.   ....+++|+.|++++|... ..+.     +..+++|++|++++  +
T Consensus       114 l~~n~-l~~~~-~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~-~~~~-----l~~l~~L~~L~l~~--n  183 (308)
T 1h6u_A          114 LTSTQ-ITDVT-PLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVS-DLTP-----LANLSKLTTLKADD--N  183 (308)
T ss_dssp             CTTSC-CCCCG-GGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCC-CCGG-----GTTCTTCCEEECCS--S
T ss_pred             CCCCC-CCCch-hhcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCC-CChh-----hcCCCCCCEEECCC--C
Confidence            99964 56665 4889999999999844443   3456789999999998643 3332     67889999999998  5


Q ss_pred             cccccCccccccCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEeeCCCCCCcccCC
Q 018478          257 DMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPE  318 (355)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~  318 (355)
                      .+..++. +       ..+++|++|++++ +.++.++. +..+++|++|++++| .++..|.
T Consensus       184 ~l~~~~~-l-------~~l~~L~~L~L~~-N~l~~~~~-l~~l~~L~~L~l~~N-~i~~~~~  234 (308)
T 1h6u_A          184 KISDISP-L-------ASLPNLIEVHLKN-NQISDVSP-LANTSNLFIVTLTNQ-TITNQPV  234 (308)
T ss_dssp             CCCCCGG-G-------GGCTTCCEEECTT-SCCCBCGG-GTTCTTCCEEEEEEE-EEECCCE
T ss_pred             ccCcChh-h-------cCCCCCCEEEccC-CccCcccc-ccCCCCCCEEEccCC-eeecCCe
Confidence            6666664 3       4678999999998 57777764 788999999999988 5666544

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.68  E-value=4.3e-18  Score=160.14  Aligned_cols=202  Identities=18%  Similarity=0.160  Sum_probs=95.1

Q ss_pred             CCCcEEEeeccCCcCc----ccccccCCCCCceEeccccCCCcCC------CCCCCCCCCcceEEEccccCcCc-----c
Q 018478          125 TSLETIHIFYCENMKI----LPSGLHNLRQLQEISIEGCGNLESF------PEGGLPCAKLKEVVIRWCGRLEA-----L  189 (355)
Q Consensus       125 ~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~l~~~------~~~~~~~~~L~~L~l~~~~~~~~-----~  189 (355)
                      ++|++|++++|.....    ++..+..+++|+.|++++| .+...      +..+..+++|+.|++++| .++.     +
T Consensus       199 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l  276 (461)
T 1z7x_W          199 CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDL  276 (461)
T ss_dssp             CCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHH
T ss_pred             CCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHH
Confidence            4555555555542211    2344445566666666655 22211      111123456666666665 2333     4


Q ss_pred             cccccCCCCCceEEEeecCcCCC----------CCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCccc
Q 018478          190 PKGLHNLKSLQKLTIGKGGLEED----------GLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMV  259 (355)
Q Consensus       190 p~~l~~~~~L~~L~l~~~~i~~~----------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  259 (355)
                      +..+..+++|++|+++.+.+...          ...++|+.|++++|.........+...+..+++|++|++++ | .+.
T Consensus       277 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~-n-~i~  354 (461)
T 1z7x_W          277 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISN-N-RLE  354 (461)
T ss_dssp             HHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCS-S-BCH
T ss_pred             HHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccC-C-ccc
Confidence            44555566666666663333211          11246666666666533321111111144556677777766 2 333


Q ss_pred             ccCccccccCCCC-CCCCccceEEeccCCCcc-----cccccCCCCCCccEEeeCCCCCCcccCCC-------CCCCCcc
Q 018478          260 SFPPEDIRMGTTL-PLPTSLTSLAIFSFPNLE-----RLSSSIVDLQNLTSLYLVGCPKLKYFPEK-------GLPSSLL  326 (355)
Q Consensus       260 ~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~-----~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-------~~~~~L~  326 (355)
                      ......+  .... ...++|++|++++| .++     .++..+..+++|++|++++| +++..+..       ....+|+
T Consensus       355 ~~~~~~l--~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N-~i~~~~~~~l~~~l~~~~~~L~  430 (461)
T 1z7x_W          355 DAGVREL--CQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNN-CLGDAGILQLVESVRQPGCLLE  430 (461)
T ss_dssp             HHHHHHH--HHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSS-SCCHHHHHHHHHHHTSTTCCCC
T ss_pred             cccHHHH--HHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCC-CCCHHHHHHHHHHhccCCcchh
Confidence            2211100  0000 01346777777764 444     45555556677777777776 45443211       0123566


Q ss_pred             EEEecCCc
Q 018478          327 ELWIGGCP  334 (355)
Q Consensus       327 ~L~l~~c~  334 (355)
                      .|++.++.
T Consensus       431 ~L~~~~~~  438 (461)
T 1z7x_W          431 QLVLYDIY  438 (461)
T ss_dssp             EEECTTCC
T ss_pred             heeecccc
Confidence            66665543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.68  E-value=1.3e-18  Score=163.79  Aligned_cols=35  Identities=23%  Similarity=0.198  Sum_probs=18.5

Q ss_pred             CCCccEEeeCCCCCCcc-----cCCC-CCCCCccEEEecCCc
Q 018478          299 LQNLTSLYLVGCPKLKY-----FPEK-GLPSSLLELWIGGCP  334 (355)
Q Consensus       299 ~~~L~~L~l~~~~~l~~-----~~~~-~~~~~L~~L~l~~c~  334 (355)
                      .++|++|++++| +++.     ++.. .-+++|++|++++|+
T Consensus       369 ~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~  409 (461)
T 1z7x_W          369 GSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNC  409 (461)
T ss_dssp             TCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred             CCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence            456666666666 4542     2211 014666666666664

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.67  E-value=3.1e-17  Score=147.82  Aligned_cols=106  Identities=14%  Similarity=0.350  Sum_probs=67.3

Q ss_pred             CCCcccEEEEccCcchh-c-hhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcC--CCCCCCCCCC
Q 018478           99 LPPSLKSLRVQGCSKLE-S-IAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLES--FPEGGLPCAK  174 (355)
Q Consensus        99 ~~~~L~~L~l~~~~~~~-~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~--~~~~~~~~~~  174 (355)
                      .+++|+.|++++|. +. . ++..+..+++|++|++++|......+..++.+++|+.|++++|..++.  ++..+..+++
T Consensus        91 ~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~  169 (336)
T 2ast_B           91 SPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR  169 (336)
T ss_dssp             CCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred             cCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCC
Confidence            34677888887776 43 2 666677777888888877763334556667777778887777644442  4444455677


Q ss_pred             cceEEEccccCcCc--ccccccCCC-CCceEEEe
Q 018478          175 LKEVVIRWCGRLEA--LPKGLHNLK-SLQKLTIG  205 (355)
Q Consensus       175 L~~L~l~~~~~~~~--~p~~l~~~~-~L~~L~l~  205 (355)
                      |++|++++|..++.  ++..+..++ +|++|+++
T Consensus       170 L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~  203 (336)
T 2ast_B          170 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS  203 (336)
T ss_dssp             CCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred             CCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence            77777777634443  344555666 66665554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.66  E-value=1.4e-15  Score=135.56  Aligned_cols=199  Identities=13%  Similarity=0.060  Sum_probs=108.8

Q ss_pred             CCCcEEEeeccCCcCcccccc--cCCCCCceEeccccCCCcCCC----CCCCCCCCcceEEEccccCcCcccccccCCCC
Q 018478          125 TSLETIHIFYCENMKILPSGL--HNLRQLQEISIEGCGNLESFP----EGGLPCAKLKEVVIRWCGRLEALPKGLHNLKS  198 (355)
Q Consensus       125 ~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~l~~~~----~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~  198 (355)
                      ++|++|++++|......|..+  ..+++|+.|++++|......+    ..+..+++|+.|++++|......+..++.+++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            345555555544333333333  444555555555442111111    11123445555555554332222344455555


Q ss_pred             CceEEEeecCcC------C---CCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCccccc-Ccccccc
Q 018478          199 LQKLTIGKGGLE------E---DGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSF-PPEDIRM  268 (355)
Q Consensus       199 L~~L~l~~~~i~------~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~  268 (355)
                      |++|+++.+.+.      .   ....++|+.|++++|... ..+......+..+++|++|++++  +.+..+ |..+.. 
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~--N~l~~~~p~~~~~-  246 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSH--NSLRATVNPSAPR-  246 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTT--SCCCCCCCSCCSS-
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCC--CCCCccchhhHHh-
Confidence            555555533211      0   123456777777777642 22211000035678899999988  455554 443310 


Q ss_pred             CCCCCCCCccceEEeccCCCcccccccCCCCCCccEEeeCCCCCCcccCCCCCCCCccEEEecCCc
Q 018478          269 GTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPEKGLPSSLLELWIGGCP  334 (355)
Q Consensus       269 ~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~  334 (355)
                         ...+++|++|++++ +.++.+|..+  .++|++|++++| +++.++....+++|++|++.+++
T Consensus       247 ---~~~~~~L~~L~Ls~-N~l~~lp~~~--~~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          247 ---CMWSSALNSLNLSF-AGLEQVPKGL--PAKLRVLDLSSN-RLNRAPQPDELPEVDNLTLDGNP  305 (310)
T ss_dssp             ---CCCCTTCCCEECCS-SCCCSCCSCC--CSCCSCEECCSC-CCCSCCCTTSCCCCSCEECSSTT
T ss_pred             ---ccCcCcCCEEECCC-CCCCchhhhh--cCCCCEEECCCC-cCCCCchhhhCCCccEEECcCCC
Confidence               02236899999988 6788888744  378999999988 78887664557889999988775

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.65  E-value=1.2e-17  Score=161.96  Aligned_cols=221  Identities=17%  Similarity=0.055  Sum_probs=126.8

Q ss_pred             CcccEEEEccCcch----hchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCC---cCCCCCCCCCC
Q 018478          101 PSLKSLRVQGCSKL----ESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNL---ESFPEGGLPCA  173 (355)
Q Consensus       101 ~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l---~~~~~~~~~~~  173 (355)
                      ++|+.|++++|...    ..++..+..+++|++|++.+|. +..++..+..+++|+.|+++.+...   ...+..+..++
T Consensus       192 ~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~  270 (592)
T 3ogk_B          192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPR  270 (592)
T ss_dssp             CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCT
T ss_pred             CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccc
Confidence            45666666555421    2344444556666666666655 4445555666666666666543221   12233445566


Q ss_pred             CcceEEEccccCcCcccccccCCCCCceEEEeecCcCC------CCCCCCccEEEecCCcchhhhhhhhcccCCCCCccc
Q 018478          174 KLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEE------DGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLR  247 (355)
Q Consensus       174 ~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~  247 (355)
                      +|+.+.+.++ ....+|..+..+++|++|+++...+..      ...+++|+.|++.++ .........   +..+++|+
T Consensus       271 ~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~~~~~l~~~---~~~~~~L~  345 (592)
T 3ogk_B          271 KLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV-IGDRGLEVL---AQYCKQLK  345 (592)
T ss_dssp             TCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHH---HHHCTTCC
T ss_pred             cccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCc-cCHHHHHHH---HHhCCCCC
Confidence            7777777663 344556666777888888887433322      245678888888732 222222221   45677888


Q ss_pred             eeEeccc---------CCccccc--CccccccCCCCCCCCccceEEeccCCCccc-ccccC-CCCCCccEEeeCC---CC
Q 018478          248 ELRIEGC---------DDDMVSF--PPEDIRMGTTLPLPTSLTSLAIFSFPNLER-LSSSI-VDLQNLTSLYLVG---CP  311 (355)
Q Consensus       248 ~L~l~~~---------~~~~~~~--~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-l~~~~-~~~~~L~~L~l~~---~~  311 (355)
                      +|++++.         |+.++..  ....       ...++|++|+++. +.++. .+..+ ..+++|++|++++   |.
T Consensus       346 ~L~L~~g~~~~~~~~~~~~~~~~~~~~l~-------~~~~~L~~L~l~~-~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n  417 (592)
T 3ogk_B          346 RLRIERGADEQGMEDEEGLVSQRGLIALA-------QGCQELEYMAVYV-SDITNESLESIGTYLKNLCDFRLVLLDREE  417 (592)
T ss_dssp             EEEEECCCCSSTTSSTTCCCCHHHHHHHH-------HHCTTCSEEEEEE-SCCCHHHHHHHHHHCCSCCEEEEEECSCCS
T ss_pred             EEEeecCccccccccccCccCHHHHHHHH-------hhCccCeEEEeec-CCccHHHHHHHHhhCCCCcEEEEeecCCCc
Confidence            8888820         2333221  1111       2357888888854 56553 22223 3488999999973   55


Q ss_pred             CCcccCCC-C------CCCCccEEEecCCch
Q 018478          312 KLKYFPEK-G------LPSSLLELWIGGCPL  335 (355)
Q Consensus       312 ~l~~~~~~-~------~~~~L~~L~l~~c~~  335 (355)
                      +++..|.. +      -+++|++|+++.|..
T Consensus       418 ~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~  448 (592)
T 3ogk_B          418 RITDLPLDNGVRSLLIGCKKLRRFAFYLRQG  448 (592)
T ss_dssp             CCSSCCCHHHHHHHHHHCTTCCEEEEECCGG
T ss_pred             cccCchHHHHHHHHHHhCCCCCEEEEecCCC
Confidence            77765432 1      168999999988764

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.65  E-value=1.1e-17  Score=162.30  Aligned_cols=59  Identities=14%  Similarity=0.241  Sum_probs=33.5

Q ss_pred             CCccceEEeccCCCccc-ccccC-CCCCCccEEeeCCCCCCcccCCC---CCCCCccEEEecCCch
Q 018478          275 PTSLTSLAIFSFPNLER-LSSSI-VDLQNLTSLYLVGCPKLKYFPEK---GLPSSLLELWIGGCPL  335 (355)
Q Consensus       275 ~~~L~~L~l~~~~~l~~-l~~~~-~~~~~L~~L~l~~~~~l~~~~~~---~~~~~L~~L~l~~c~~  335 (355)
                      .++|+.|++++|. ++. ....+ ..+++|++|++++|+ ++..+..   ..+++|++|++.+|+.
T Consensus       455 ~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~-~~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          455 AKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCP-FGDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             CTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCS-CCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             chhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCC-CcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            4556666666643 321 11111 457788888888874 4332211   1257888888888865

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.64  E-value=1.7e-17  Score=161.01  Aligned_cols=312  Identities=15%  Similarity=0.079  Sum_probs=162.3

Q ss_pred             CCCCccEEeecccccCcccccCc----cCCCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCC---
Q 018478            4 TNSSLEILEIWSCRSLTYLAAVQ----LPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCR---   76 (355)
Q Consensus         4 ~~~~L~~L~l~~~~~l~~l~~~~----~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~---   76 (355)
                      .+++|++|++++| .++......    ++.+|++|++.+|..+.......          ....+++|++|++++|.   
T Consensus       110 ~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~----------~~~~~~~L~~L~L~~~~~~~  178 (592)
T 3ogk_B          110 NLRQLKSVHFRRM-IVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLS----------IVTHCRKIKTLLMEESSFSE  178 (592)
T ss_dssp             HCTTCCEEEEESC-BCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHH----------HHHHCTTCSEEECTTCEEEC
T ss_pred             hCCCCCeEEeecc-EecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHH----------HHhhCCCCCEEECccccccC
Confidence            5788999999876 343221111    22348999988876332111100          01236667777776653   


Q ss_pred             --------------ccchh-ccccccc----hhccccccCCCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCC
Q 018478           77 --------------SLTSI-FSKNELS----ATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCEN  137 (355)
Q Consensus        77 --------------~l~~~-~~~n~~~----~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  137 (355)
                                    .++.+ ++.|++.    +.++  .....+++|+.|++++|. +..++..+..+++|++|.++....
T Consensus       179 ~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~--~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~  255 (592)
T 3ogk_B          179 KDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLE--TIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNE  255 (592)
T ss_dssp             CCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHH--HHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCC
T ss_pred             cchhHHHHHHhcCCCccEEEeeccCCCccCHHHHH--HHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhccccccc
Confidence                          12222 3333333    1111  111335799999999987 777888888899999999975332


Q ss_pred             c---CcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEccccCcCc--ccccccCCCCCceEEEeecCcCC-
Q 018478          138 M---KILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEA--LPKGLHNLKSLQKLTIGKGGLEE-  211 (355)
Q Consensus       138 ~---~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~--~p~~l~~~~~L~~L~l~~~~i~~-  211 (355)
                      .   ...+..+..+++|+.++++++ ....+|..+..+++|++|++++|. ++.  ++..+..+++|++|+++ ..+.. 
T Consensus       256 ~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~-~~~~~~  332 (592)
T 3ogk_B          256 DIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETR-NVIGDR  332 (592)
T ss_dssp             CTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEE-GGGHHH
T ss_pred             ccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEecc-CccCHH
Confidence            2   122344556667777777653 334455555556677777777765 322  11234566666666665 11111 


Q ss_pred             -----CCCCCCccEEEecC----------Ccchhhhhhhhc----------------------cc-CCCCCccceeEecc
Q 018478          212 -----DGLPTNLHSLDIRG----------NMEIWKSMIEWG----------------------QG-FHRFSSLRELRIEG  253 (355)
Q Consensus       212 -----~~~~~~L~~L~l~~----------~~~~~~~~~~~~----------------------~~-~~~l~~L~~L~l~~  253 (355)
                           ...+++|+.|++.+          |..++.......                      .. ...+++|++|++++
T Consensus       333 ~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~  412 (592)
T 3ogk_B          333 GLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVL  412 (592)
T ss_dssp             HHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEE
T ss_pred             HHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEee
Confidence                 01234555555552          332322111000                      00 12245555665552


Q ss_pred             c--CCcccccCccccccCCCCCCCCccceEEeccCCC-ccc-ccccC-CCCCCccEEeeCCCCCCcccCCC---CCCCCc
Q 018478          254 C--DDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPN-LER-LSSSI-VDLQNLTSLYLVGCPKLKYFPEK---GLPSSL  325 (355)
Q Consensus       254 ~--~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-l~~-l~~~~-~~~~~L~~L~l~~~~~l~~~~~~---~~~~~L  325 (355)
                      .  |+.++..|.+.. ........++|++|++++|.+ +.. ....+ ..+++|++|++++| +++.....   .-+++|
T Consensus       413 ~~~~n~l~~~p~~~~-~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L  490 (592)
T 3ogk_B          413 LDREERITDLPLDNG-VRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEGLMEFSRGCPNL  490 (592)
T ss_dssp             CSCCSCCSSCCCHHH-HHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC-CSSHHHHHHHHTCCTTC
T ss_pred             cCCCccccCchHHHH-HHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC-CCCHHHHHHHHhcCccc
Confidence            0  233433321100 000002356777777765442 221 11111 44788888888887 56542211   236899


Q ss_pred             cEEEecCCc
Q 018478          326 LELWIGGCP  334 (355)
Q Consensus       326 ~~L~l~~c~  334 (355)
                      ++|++++|+
T Consensus       491 ~~L~l~~n~  499 (592)
T 3ogk_B          491 QKLEMRGCC  499 (592)
T ss_dssp             CEEEEESCC
T ss_pred             CeeeccCCC
Confidence            999999998

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.63  E-value=2.3e-15  Score=131.52  Aligned_cols=123  Identities=20%  Similarity=0.305  Sum_probs=80.2

Q ss_pred             cccccEEEecCCCccchhccccccchhccccccCCCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCccc-
Q 018478           64 SYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILP-  142 (355)
Q Consensus        64 ~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-  142 (355)
                      +++|+.|++.++ .++.+             +....+++|+.|++++|. +..++ .+..+++|++|++++|. +..++ 
T Consensus        40 l~~L~~L~l~~~-~i~~~-------------~~l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~n~-l~~~~~  102 (272)
T 3rfs_A           40 LNSIDQIIANNS-DIKSV-------------QGIQYLPNVRYLALGGNK-LHDIS-ALKELTNLTYLILTGNQ-LQSLPN  102 (272)
T ss_dssp             HTTCCEEECTTS-CCCCC-------------TTGGGCTTCCEEECTTSC-CCCCG-GGTTCTTCCEEECTTSC-CCCCCT
T ss_pred             ccceeeeeeCCC-Ccccc-------------cccccCCCCcEEECCCCC-CCCch-hhcCCCCCCEEECCCCc-cCccCh
Confidence            677888887765 34444             433445778888888776 55554 56677888888888776 44443 


Q ss_pred             ccccCCCCCceEeccccCCCcCCCC-CCCCCCCcceEEEccccCcCccc-ccccCCCCCceEEEe
Q 018478          143 SGLHNLRQLQEISIEGCGNLESFPE-GGLPCAKLKEVVIRWCGRLEALP-KGLHNLKSLQKLTIG  205 (355)
Q Consensus       143 ~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~p-~~l~~~~~L~~L~l~  205 (355)
                      ..+..+++|+.|++++| .+..++. .+..+++|+.|++++|. ++.++ ..+..+++|++|+++
T Consensus       103 ~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~  165 (272)
T 3rfs_A          103 GVFDKLTNLKELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLS  165 (272)
T ss_dssp             TTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred             hHhcCCcCCCEEECCCC-cCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECC
Confidence            34577788888888876 4555543 35667788888887763 44443 345666666666665

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.62  E-value=1.4e-15  Score=135.61  Aligned_cols=199  Identities=18%  Similarity=0.122  Sum_probs=144.4

Q ss_pred             CcccEEEEccCcchhchhhhc--cCCCCCcEEEeeccCCcCccc----ccccCCCCCceEeccccCCCcCC-CCCCCCCC
Q 018478          101 PSLKSLRVQGCSKLESIAETL--DNSTSLETIHIFYCENMKILP----SGLHNLRQLQEISIEGCGNLESF-PEGGLPCA  173 (355)
Q Consensus       101 ~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~  173 (355)
                      ++|+.|++++|......|..+  ..+++|++|++++|......+    ..+..+++|+.|++++|. +..+ +..+..++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~  169 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH-SPAFSCEQVRAFP  169 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS-SCCCCTTSCCCCT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC-cchhhHHHhccCC
Confidence            569999999988444566665  778999999999988444332    234568899999999874 4444 46777889


Q ss_pred             CcceEEEccccCcCc--cc--ccccCCCCCceEEEeecCcCCC--------CCCCCccEEEecCCcchhhhhhhhcccCC
Q 018478          174 KLKEVVIRWCGRLEA--LP--KGLHNLKSLQKLTIGKGGLEED--------GLPTNLHSLDIRGNMEIWKSMIEWGQGFH  241 (355)
Q Consensus       174 ~L~~L~l~~~~~~~~--~p--~~l~~~~~L~~L~l~~~~i~~~--------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  241 (355)
                      +|++|++++|.....  ++  ..+..+++|++|+++.+.+...        ..+++|+.|++++|......+..+. .+.
T Consensus       170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~-~~~  248 (310)
T 4glp_A          170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAP-RCM  248 (310)
T ss_dssp             TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCS-SCC
T ss_pred             CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHH-hcc
Confidence            999999999754322  22  2336788999999986655421        2458999999999885543333211 133


Q ss_pred             CCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEeeCCCCCCcc
Q 018478          242 RFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKY  315 (355)
Q Consensus       242 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~  315 (355)
                      .+++|++|++++  +.++.+|...         +++|++|++++ +.++.+|. +..+++|++|++++| .++.
T Consensus       249 ~~~~L~~L~Ls~--N~l~~lp~~~---------~~~L~~L~Ls~-N~l~~~~~-~~~l~~L~~L~L~~N-~l~~  308 (310)
T 4glp_A          249 WSSALNSLNLSF--AGLEQVPKGL---------PAKLRVLDLSS-NRLNRAPQ-PDELPEVDNLTLDGN-PFLV  308 (310)
T ss_dssp             CCTTCCCEECCS--SCCCSCCSCC---------CSCCSCEECCS-CCCCSCCC-TTSCCCCSCEECSST-TTSC
T ss_pred             CcCcCCEEECCC--CCCCchhhhh---------cCCCCEEECCC-CcCCCCch-hhhCCCccEEECcCC-CCCC
Confidence            347999999998  6777888644         37999999999 68888765 678999999999998 4543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.62  E-value=1.5e-16  Score=143.33  Aligned_cols=171  Identities=13%  Similarity=0.190  Sum_probs=116.3

Q ss_pred             CccEEeecccccCcccccCc-cCCCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccch--hcc
Q 018478            7 SLEILEIWSCRSLTYLAAVQ-LPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTS--IFS   83 (355)
Q Consensus         7 ~L~~L~l~~~~~l~~l~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~   83 (355)
                      .++.++++++ .+..-.... ..++++.|++.++ .+...+...            ..+++|++|+++++. +..  +  
T Consensus        48 ~~~~l~l~~~-~~~~~~~~~~~~~~l~~L~l~~n-~l~~~~~~~------------~~~~~L~~L~L~~~~-l~~~~~--  110 (336)
T 2ast_B           48 LWQTLDLTGK-NLHPDVTGRLLSQGVIAFRCPRS-FMDQPLAEH------------FSPFRVQHMDLSNSV-IEVSTL--  110 (336)
T ss_dssp             TSSEEECTTC-BCCHHHHHHHHHTTCSEEECTTC-EECSCCCSC------------CCCBCCCEEECTTCE-ECHHHH--
T ss_pred             hheeeccccc-cCCHHHHHhhhhccceEEEcCCc-cccccchhh------------ccCCCCCEEEccCCC-cCHHHH--
Confidence            3677777754 222100011 1278889998884 455443332            348899999999874 332  2  


Q ss_pred             ccccchhcccccc-CCCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCc--ccccccCCCCCceEeccccC
Q 018478           84 KNELSATLESLEV-GNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKI--LPSGLHNLRQLQEISIEGCG  160 (355)
Q Consensus        84 ~n~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~  160 (355)
                                 +. ...+++|+.|++++|......+..+..+++|++|++++|..++.  ++..+..+++|+.|++++|.
T Consensus       111 -----------~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~  179 (336)
T 2ast_B          111 -----------HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF  179 (336)
T ss_dssp             -----------HHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCT
T ss_pred             -----------HHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCC
Confidence                       21 24558999999999974446777888899999999999955663  66667889999999999985


Q ss_pred             CCcC--CCCCCCCCC-CcceEEEcccc-Cc--CcccccccCCCCCceEEEe
Q 018478          161 NLES--FPEGGLPCA-KLKEVVIRWCG-RL--EALPKGLHNLKSLQKLTIG  205 (355)
Q Consensus       161 ~l~~--~~~~~~~~~-~L~~L~l~~~~-~~--~~~p~~l~~~~~L~~L~l~  205 (355)
                      .++.  ++..+..++ +|++|++++|. .+  ..++..+..+++|++|+++
T Consensus       180 ~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~  230 (336)
T 2ast_B          180 DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS  230 (336)
T ss_dssp             TCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECT
T ss_pred             CcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCC
Confidence            5543  445566678 99999999974 33  3345566677766666664

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.60  E-value=5.4e-15  Score=129.19  Aligned_cols=193  Identities=18%  Similarity=0.197  Sum_probs=127.0

Q ss_pred             CCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccccchhccccccCCCCCcccEEEE
Q 018478           29 RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRV  108 (355)
Q Consensus        29 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~~~~~~L~~L~l  108 (355)
                      ++|++|.+.++ .++.++.             +..+++|++|+++++ .++.+             +....+++|++|++
T Consensus        41 ~~L~~L~l~~~-~i~~~~~-------------l~~l~~L~~L~l~~n-~l~~~-------------~~l~~l~~L~~L~L   92 (272)
T 3rfs_A           41 NSIDQIIANNS-DIKSVQG-------------IQYLPNVRYLALGGN-KLHDI-------------SALKELTNLTYLIL   92 (272)
T ss_dssp             TTCCEEECTTS-CCCCCTT-------------GGGCTTCCEEECTTS-CCCCC-------------GGGTTCTTCCEEEC
T ss_pred             cceeeeeeCCC-Ccccccc-------------cccCCCCcEEECCCC-CCCCc-------------hhhcCCCCCCEEEC
Confidence            77888888874 3555543             233778888888875 34444             43445578888888


Q ss_pred             ccCcchhchh-hhccCCCCCcEEEeeccCCcCccc-ccccCCCCCceEeccccCCCcCCCCC-CCCCCCcceEEEccccC
Q 018478          109 QGCSKLESIA-ETLDNSTSLETIHIFYCENMKILP-SGLHNLRQLQEISIEGCGNLESFPEG-GLPCAKLKEVVIRWCGR  185 (355)
Q Consensus       109 ~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~~~~  185 (355)
                      ++|. +..++ ..+..+++|++|++++|. +..++ ..+..+++|+.|++++| .++.++.. +..+++|+.|++++|. 
T Consensus        93 ~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-  168 (272)
T 3rfs_A           93 TGNQ-LQSLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQ-  168 (272)
T ss_dssp             TTSC-CCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-
T ss_pred             CCCc-cCccChhHhcCCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCC-
Confidence            8876 55554 345778888888888877 44444 44677888888888887 55565543 4667888888888864 


Q ss_pred             cCccc-ccccCCCCCceEEEeecCcC---C--CCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCccc
Q 018478          186 LEALP-KGLHNLKSLQKLTIGKGGLE---E--DGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMV  259 (355)
Q Consensus       186 ~~~~p-~~l~~~~~L~~L~l~~~~i~---~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  259 (355)
                      ++.++ ..+..+++|++|+++.+.+.   .  ...+++|+.|++++|..           ...+++|+.++++. +....
T Consensus       169 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~-----------~~~~~~l~~l~~~~-n~~~g  236 (272)
T 3rfs_A          169 LQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW-----------DCTCPGIRYLSEWI-NKHSG  236 (272)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB-----------CCCTTTTHHHHHHH-HHTGG
T ss_pred             cCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc-----------cccCcHHHHHHHHH-HhCCC
Confidence            44444 34677888888888743333   2  24567888888888752           23456777777776 33344


Q ss_pred             ccCccc
Q 018478          260 SFPPED  265 (355)
Q Consensus       260 ~~~~~~  265 (355)
                      .+|...
T Consensus       237 ~ip~~~  242 (272)
T 3rfs_A          237 VVRNSA  242 (272)
T ss_dssp             GBBCTT
T ss_pred             cccCcc
Confidence            555544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.60  E-value=6.6e-17  Score=156.82  Aligned_cols=90  Identities=17%  Similarity=0.144  Sum_probs=47.6

Q ss_pred             CCCccceeEec--c--cCCcccccCccccccCCCCCCCCccceEEeccCCCccc-ccccC-CCCCCccEEeeCCCCCCcc
Q 018478          242 RFSSLRELRIE--G--CDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLER-LSSSI-VDLQNLTSLYLVGCPKLKY  315 (355)
Q Consensus       242 ~l~~L~~L~l~--~--~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-l~~~~-~~~~~L~~L~l~~~~~l~~  315 (355)
                      .+++|++|+++  +  .|+.++..+.+.. ........++|++|++++  .++. ....+ ..+++|++|++++| .++.
T Consensus       395 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~-~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~-~i~~  470 (594)
T 2p1m_B          395 NRPNMTRFRLCIIEPKAPDYLTLEPLDIG-FGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFA-GDSD  470 (594)
T ss_dssp             HCTTCCEEEEEESSTTCCCTTTCCCTHHH-HHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESC-CSSH
T ss_pred             hCCCcceeEeecccCCCcccccCCchhhH-HHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCC-CCcH
Confidence            45667777776  1  1455543332100 000002345677777755  3221 11112 23778888888887 4544


Q ss_pred             cCCCCC---CCCccEEEecCCch
Q 018478          316 FPEKGL---PSSLLELWIGGCPL  335 (355)
Q Consensus       316 ~~~~~~---~~~L~~L~l~~c~~  335 (355)
                      .....+   +++|++|++++|+.
T Consensus       471 ~~~~~l~~~~~~L~~L~L~~n~~  493 (594)
T 2p1m_B          471 LGMHHVLSGCDSLRKLEIRDCPF  493 (594)
T ss_dssp             HHHHHHHHHCTTCCEEEEESCSC
T ss_pred             HHHHHHHhcCCCcCEEECcCCCC
Confidence            322111   68999999999975

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.57  E-value=3.5e-16  Score=143.75  Aligned_cols=238  Identities=15%  Similarity=0.116  Sum_probs=137.5

Q ss_pred             cccccccEEEecCCCccchhccccccchhccccccCCCCCcccEEEEccCc--chh-chhh-------hccCCCCCcEEE
Q 018478           62 YTSYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQGCS--KLE-SIAE-------TLDNSTSLETIH  131 (355)
Q Consensus        62 ~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~-~~~~-------~~~~l~~L~~L~  131 (355)
                      ..+++|++|+++++. +...    .. ..++  .....+++|+.|++++|.  .+. .+|.       .+..+++|++|+
T Consensus        29 ~~~~~L~~L~L~~n~-i~~~----~~-~~l~--~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~  100 (386)
T 2ca6_A           29 LEDDSVKEIVLSGNT-IGTE----AA-RWLS--ENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR  100 (386)
T ss_dssp             HHCSCCCEEECTTSE-ECHH----HH-HHHH--HTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred             hcCCCccEEECCCCC-CCHH----HH-HHHH--HHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence            346677777777653 2221    00 0000  011234678888887763  111 2232       336778888888


Q ss_pred             eeccCCcC----cccccccCCCCCceEeccccCCCcC-----CCCCCCCC---------CCcceEEEccccCc-Cccc--
Q 018478          132 IFYCENMK----ILPSGLHNLRQLQEISIEGCGNLES-----FPEGGLPC---------AKLKEVVIRWCGRL-EALP--  190 (355)
Q Consensus       132 l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~l~~-----~~~~~~~~---------~~L~~L~l~~~~~~-~~~p--  190 (355)
                      +++|....    .++..+..+++|+.|++++|. +..     ++..+..+         ++|++|++++|... ..++  
T Consensus       101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l  179 (386)
T 2ca6_A          101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW  179 (386)
T ss_dssp             CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHH
T ss_pred             CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHH
Confidence            88877333    256667777888888888763 321     11112222         67888888876432 2333  


Q ss_pred             -ccccCCCCCceEEEeecCcC----------CCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCccc
Q 018478          191 -KGLHNLKSLQKLTIGKGGLE----------EDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMV  259 (355)
Q Consensus       191 -~~l~~~~~L~~L~l~~~~i~----------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  259 (355)
                       ..+..+++|++|+++.+.+.          .....++|+.|++++|..........+..+..+++|++|++++ | .+.
T Consensus       180 ~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~-n-~i~  257 (386)
T 2ca6_A          180 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND-C-LLS  257 (386)
T ss_dssp             HHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTT-C-CCC
T ss_pred             HHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCC-C-CCc
Confidence             35667778888888744444          3345678888888888753211111111166778888888887 3 333


Q ss_pred             cc-----CccccccCCCCCCCCccceEEeccCCCccc-----ccccC-CCCCCccEEeeCCCCCCcccC
Q 018478          260 SF-----PPEDIRMGTTLPLPTSLTSLAIFSFPNLER-----LSSSI-VDLQNLTSLYLVGCPKLKYFP  317 (355)
Q Consensus       260 ~~-----~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----l~~~~-~~~~~L~~L~l~~~~~l~~~~  317 (355)
                      ..     +..+.     ....++|++|++++| .++.     +|..+ ..+++|++|++++| .++..+
T Consensus       258 ~~~~~~l~~~l~-----~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N-~l~~~~  319 (386)
T 2ca6_A          258 ARGAAAVVDAFS-----KLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGN-RFSEED  319 (386)
T ss_dssp             HHHHHHHHHHHH-----TCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTS-BSCTTS
T ss_pred             hhhHHHHHHHHh-----hccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCC-cCCcch
Confidence            32     22210     012578888888884 5554     66655 55788888888887 555443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.57  E-value=3.3e-14  Score=122.68  Aligned_cols=173  Identities=17%  Similarity=0.228  Sum_probs=94.3

Q ss_pred             CCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCC-CCCCCCCCcceEEEccccCcCcccccccCCCCCceEE
Q 018478          125 TSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFP-EGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLT  203 (355)
Q Consensus       125 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~  203 (355)
                      .+.++++++++. ++.+|..+.  ++++.|++++| .+..++ ..+..+++|+.|++++|......+..+..+++|++|+
T Consensus        14 ~~~~~l~~~~~~-l~~~p~~~~--~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~   89 (251)
T 3m19_A           14 EGKKEVDCQGKS-LDSVPSGIP--ADTEKLDLQST-GLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG   89 (251)
T ss_dssp             GGGTEEECTTCC-CSSCCSCCC--TTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCeEEecCCCC-ccccCCCCC--CCCCEEEccCC-CcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence            355677777655 677776553  57888888876 444444 4566778888888888643333334566666666666


Q ss_pred             EeecCcCCCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEe
Q 018478          204 IGKGGLEEDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAI  283 (355)
Q Consensus       204 l~~~~i~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l  283 (355)
                      ++                   +|... ..+...   +..+++|++|++++  +.++.++...+      ..+++|++|++
T Consensus        90 L~-------------------~n~l~-~~~~~~---~~~l~~L~~L~L~~--N~l~~~~~~~~------~~l~~L~~L~L  138 (251)
T 3m19_A           90 LA-------------------NNQLA-SLPLGV---FDHLTQLDKLYLGG--NQLKSLPSGVF------DRLTKLKELRL  138 (251)
T ss_dssp             CT-------------------TSCCC-CCCTTT---TTTCTTCCEEECCS--SCCCCCCTTTT------TTCTTCCEEEC
T ss_pred             CC-------------------CCccc-ccChhH---hcccCCCCEEEcCC--CcCCCcChhHh------ccCCcccEEEC
Confidence            65                   33321 111111   34455555555555  34444443321      23455555555


Q ss_pred             ccCCCcccccc-cCCCCCCccEEeeCCCCCCcccCCCCC--CCCccEEEecCCc
Q 018478          284 FSFPNLERLSS-SIVDLQNLTSLYLVGCPKLKYFPEKGL--PSSLLELWIGGCP  334 (355)
Q Consensus       284 ~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~--~~~L~~L~l~~c~  334 (355)
                      ++ +.++.++. .+..+++|++|++++| +++.++...+  +++|++|++.+++
T Consensus       139 s~-N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          139 NT-NQLQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             CS-SCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred             cC-CcCCccCHHHcCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCc
Confidence            55 34454443 3445555555555555 4555544322  4555555555543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.56  E-value=8.1e-14  Score=120.18  Aligned_cols=168  Identities=21%  Similarity=0.265  Sum_probs=104.1

Q ss_pred             CCccEEeecccccCcccccCccCCCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhcccc
Q 018478            6 SSLEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKN   85 (355)
Q Consensus         6 ~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n   85 (355)
                      ++.+++++++ ..++.+| ..+++++++|++++ +.+..++...           +..+++|++|+++++ .++.+    
T Consensus        14 ~~~~~l~~~~-~~l~~~p-~~~~~~l~~L~L~~-n~l~~~~~~~-----------~~~l~~L~~L~L~~n-~l~~~----   74 (251)
T 3m19_A           14 EGKKEVDCQG-KSLDSVP-SGIPADTEKLDLQS-TGLATLSDAT-----------FRGLTKLTWLNLDYN-QLQTL----   74 (251)
T ss_dssp             GGGTEEECTT-CCCSSCC-SCCCTTCCEEECTT-SCCCCCCTTT-----------TTTCTTCCEEECTTS-CCCCC----
T ss_pred             CCCeEEecCC-CCccccC-CCCCCCCCEEEccC-CCcCccCHhH-----------hcCcccCCEEECCCC-cCCcc----
Confidence            4566777764 4566666 34557788888887 3456555432           455777777777764 34443    


Q ss_pred             ccchhcccccc--CCCCCcccEEEEccCcchhchh-hhccCCCCCcEEEeeccCCcCcccc-cccCCCCCceEeccccCC
Q 018478           86 ELSATLESLEV--GNLPPSLKSLRVQGCSKLESIA-ETLDNSTSLETIHIFYCENMKILPS-GLHNLRQLQEISIEGCGN  161 (355)
Q Consensus        86 ~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~  161 (355)
                               +.  ...+++|+.|++++|. +..++ ..+..+++|++|++++|. +..++. .+..+++|+.|++++| .
T Consensus        75 ---------~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~  142 (251)
T 3m19_A           75 ---------SAGVFDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTN-Q  142 (251)
T ss_dssp             ---------CTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-C
T ss_pred             ---------CHhHhccCCcCCEEECCCCc-ccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCC-c
Confidence                     22  1334677777777776 55544 445667777777777776 555543 3566777777777776 5


Q ss_pred             CcCCCC-CCCCCCCcceEEEccccCcCccc-ccccCCCCCceEEEe
Q 018478          162 LESFPE-GGLPCAKLKEVVIRWCGRLEALP-KGLHNLKSLQKLTIG  205 (355)
Q Consensus       162 l~~~~~-~~~~~~~L~~L~l~~~~~~~~~p-~~l~~~~~L~~L~l~  205 (355)
                      ++.++. .+..+++|+.|++++|. ++.++ ..+..+++|++|+++
T Consensus       143 l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~  187 (251)
T 3m19_A          143 LQSIPAGAFDKLTNLQTLSLSTNQ-LQSVPHGAFDRLGKLQTITLF  187 (251)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECC
T ss_pred             CCccCHHHcCcCcCCCEEECCCCc-CCccCHHHHhCCCCCCEEEee
Confidence            555554 45667777777777754 33333 355566666655554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.55  E-value=6.4e-16  Score=142.00  Aligned_cols=222  Identities=15%  Similarity=0.167  Sum_probs=157.5

Q ss_pred             CCcccEEEEccCcchhc-----hhhhccCCCCCcEEEeeccCC--c-Cccccc-------ccCCCCCceEeccccCCCcC
Q 018478          100 PPSLKSLRVQGCSKLES-----IAETLDNSTSLETIHIFYCEN--M-KILPSG-------LHNLRQLQEISIEGCGNLES  164 (355)
Q Consensus       100 ~~~L~~L~l~~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~--~-~~~~~~-------~~~l~~L~~L~l~~~~~l~~  164 (355)
                      +++|+.|++++|. +..     ++..+..+++|++|++++|..  + ..+|..       +..+++|+.|++++| .+..
T Consensus        31 ~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~  108 (386)
T 2ca6_A           31 DDSVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-AFGP  108 (386)
T ss_dssp             CSCCCEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-CCCT
T ss_pred             CCCccEEECCCCC-CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC-cCCH
Confidence            4689999999987 432     445577899999999999741  1 123433       368899999999998 4443


Q ss_pred             -----CCCCCCCCCCcceEEEccccCcC----cccccccCC---------CCCceEEEeecCcCCC---------CCCCC
Q 018478          165 -----FPEGGLPCAKLKEVVIRWCGRLE----ALPKGLHNL---------KSLQKLTIGKGGLEED---------GLPTN  217 (355)
Q Consensus       165 -----~~~~~~~~~~L~~L~l~~~~~~~----~~p~~l~~~---------~~L~~L~l~~~~i~~~---------~~~~~  217 (355)
                           +|..+..+++|+.|++++|....    .++..+..+         ++|++|+++.+.+...         ...++
T Consensus       109 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~  188 (386)
T 2ca6_A          109 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL  188 (386)
T ss_dssp             TTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCC
Confidence                 45566678999999999976422    223334444         8999999996655422         24579


Q ss_pred             ccEEEecCCcchhhhhhhhcc-cCCCCCccceeEecccCCcc-----cccCccccccCCCCCCCCccceEEeccCCCccc
Q 018478          218 LHSLDIRGNMEIWKSMIEWGQ-GFHRFSSLRELRIEGCDDDM-----VSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLER  291 (355)
Q Consensus       218 L~~L~l~~~~~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  291 (355)
                      |+.|++++|.........+.. .+..+++|++|++++ | .+     ..++..+       ...++|++|++++| .++.
T Consensus       189 L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~-n-~l~~~g~~~l~~~l-------~~~~~L~~L~L~~n-~i~~  258 (386)
T 2ca6_A          189 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQD-N-TFTHLGSSALAIAL-------KSWPNLRELGLNDC-LLSA  258 (386)
T ss_dssp             CCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCS-S-CCHHHHHHHHHHHG-------GGCTTCCEEECTTC-CCCH
T ss_pred             cCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcC-C-CCCcHHHHHHHHHH-------ccCCCcCEEECCCC-CCch
Confidence            999999999754322111111 277889999999998 3 44     4455544       46789999999995 4553


Q ss_pred             -----ccccC--CCCCCccEEeeCCCCCCcc-----cCCCC--CCCCccEEEecCCc
Q 018478          292 -----LSSSI--VDLQNLTSLYLVGCPKLKY-----FPEKG--LPSSLLELWIGGCP  334 (355)
Q Consensus       292 -----l~~~~--~~~~~L~~L~l~~~~~l~~-----~~~~~--~~~~L~~L~l~~c~  334 (355)
                           ++..+  ..+++|++|++++| +++.     ++...  .+++|++|++.+|+
T Consensus       259 ~~~~~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          259 RGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             HHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             hhHHHHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence                 35555  34899999999999 6877     55422  26999999999986

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.52  E-value=3.8e-15  Score=135.69  Aligned_cols=206  Identities=15%  Similarity=0.109  Sum_probs=108.9

Q ss_pred             cccEEEEccCcchhc-hhhhccCC-----CCCcEEEeeccCCcCc-cccc----ccCC-CCCceEeccccCCCcCCCC-C
Q 018478          102 SLKSLRVQGCSKLES-IAETLDNS-----TSLETIHIFYCENMKI-LPSG----LHNL-RQLQEISIEGCGNLESFPE-G  168 (355)
Q Consensus       102 ~L~~L~l~~~~~~~~-~~~~~~~l-----~~L~~L~l~~~~~~~~-~~~~----~~~l-~~L~~L~l~~~~~l~~~~~-~  168 (355)
                      +|+.|++++|. +.. .+..+..+     ++|++|++++|. ++. .+..    +..+ ++|+.|++++| .++..+. .
T Consensus        52 ~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~  128 (362)
T 3goz_A           52 SVTSLNLSGNS-LGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSE  128 (362)
T ss_dssp             TCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHH
T ss_pred             ceeEEECcCCC-CCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCC-cCCcHHHHH
Confidence            67888887776 443 23333332     778888887777 433 2222    3334 67788888776 3444332 1


Q ss_pred             ----CCC-CCCcceEEEccccCcC----cccccccCCC-CCceEEEeecCcCCCC----------CCCCccEEEecCCcc
Q 018478          169 ----GLP-CAKLKEVVIRWCGRLE----ALPKGLHNLK-SLQKLTIGKGGLEEDG----------LPTNLHSLDIRGNME  228 (355)
Q Consensus       169 ----~~~-~~~L~~L~l~~~~~~~----~~p~~l~~~~-~L~~L~l~~~~i~~~~----------~~~~L~~L~l~~~~~  228 (355)
                          +.. .++|++|++++|....    .++..+...+ +|++|+++.+.+...+          .+++|+.|++++|..
T Consensus       129 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i  208 (362)
T 3goz_A          129 FKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLL  208 (362)
T ss_dssp             HHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred             HHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCC
Confidence                112 2477778877754321    2333444444 7777777755444322          114777777777764


Q ss_pred             hhhhhhhhcccCCC-CCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCC-------CcccccccCCCCC
Q 018478          229 IWKSMIEWGQGFHR-FSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFP-------NLERLSSSIVDLQ  300 (355)
Q Consensus       229 ~~~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------~l~~l~~~~~~~~  300 (355)
                      ...........+.. .++|++|++++  +.+...+...+.  ......++|++|++++|.       .+..++..+..++
T Consensus       209 ~~~~~~~l~~~l~~~~~~L~~L~Ls~--N~l~~~~~~~l~--~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~  284 (362)
T 3goz_A          209 GLKSYAELAYIFSSIPNHVVSLNLCL--NCLHGPSLENLK--LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQ  284 (362)
T ss_dssp             GGSCHHHHHHHHHHSCTTCCEEECCS--SCCCCCCHHHHH--HTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCC
T ss_pred             ChhHHHHHHHHHhcCCCCceEEECcC--CCCCcHHHHHHH--HHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCC
Confidence            33111111111222 34777777776  344444321100  011344667777777742       1333444556677


Q ss_pred             CccEEeeCCCCCCcc
Q 018478          301 NLTSLYLVGCPKLKY  315 (355)
Q Consensus       301 ~L~~L~l~~~~~l~~  315 (355)
                      +|+.|++++| ++..
T Consensus       285 ~L~~LdL~~N-~l~~  298 (362)
T 3goz_A          285 KIILVDKNGK-EIHP  298 (362)
T ss_dssp             EEEEECTTSC-BCCG
T ss_pred             ceEEEecCCC-cCCC
Confidence            7777777776 4443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.52  E-value=1.5e-13  Score=121.15  Aligned_cols=163  Identities=17%  Similarity=0.170  Sum_probs=86.7

Q ss_pred             CCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccccchhccccccCCCCCcccEEEE
Q 018478           29 RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRV  108 (355)
Q Consensus        29 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~~~~~~L~~L~l  108 (355)
                      ++|++|+++++ .++.++.             +..+++|+.|+++++ .++.+             +....+++|+.|++
T Consensus        46 ~~L~~L~l~~~-~i~~~~~-------------~~~l~~L~~L~L~~n-~l~~~-------------~~l~~l~~L~~L~l   97 (291)
T 1h6t_A           46 NSIDQIIANNS-DIKSVQG-------------IQYLPNVTKLFLNGN-KLTDI-------------KPLANLKNLGWLFL   97 (291)
T ss_dssp             HTCCEEECTTS-CCCCCTT-------------GGGCTTCCEEECCSS-CCCCC-------------GGGTTCTTCCEEEC
T ss_pred             CcccEEEccCC-CcccChh-------------HhcCCCCCEEEccCC-ccCCC-------------cccccCCCCCEEEC
Confidence            55666666663 3444432             122556666666654 33333             22333456666666


Q ss_pred             ccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEccccCcCc
Q 018478          109 QGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEA  188 (355)
Q Consensus       109 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~  188 (355)
                      ++|. +..++. +..+++|++|++++|. +..+ ..+..+++|+.|++++| .++.+ ..+..+++|+.|++++| .++.
T Consensus        98 ~~n~-l~~~~~-l~~l~~L~~L~L~~n~-i~~~-~~l~~l~~L~~L~l~~n-~l~~~-~~l~~l~~L~~L~L~~N-~l~~  170 (291)
T 1h6t_A           98 DENK-VKDLSS-LKDLKKLKSLSLEHNG-ISDI-NGLVHLPQLESLYLGNN-KITDI-TVLSRLTKLDTLSLEDN-QISD  170 (291)
T ss_dssp             CSSC-CCCGGG-GTTCTTCCEEECTTSC-CCCC-GGGGGCTTCCEEECCSS-CCCCC-GGGGGCTTCSEEECCSS-CCCC
T ss_pred             CCCc-CCCChh-hccCCCCCEEECCCCc-CCCC-hhhcCCCCCCEEEccCC-cCCcc-hhhccCCCCCEEEccCC-cccc
Confidence            6655 444433 5556666666666655 4444 24555666666666665 34444 33445566666666664 3333


Q ss_pred             ccccccCCCCCceEEEeecC---cCCCCCCCCccEEEecCCc
Q 018478          189 LPKGLHNLKSLQKLTIGKGG---LEEDGLPTNLHSLDIRGNM  227 (355)
Q Consensus       189 ~p~~l~~~~~L~~L~l~~~~---i~~~~~~~~L~~L~l~~~~  227 (355)
                      ++. +..+++|+.|+++.+.   ++....+++|+.|++++|.
T Consensus       171 ~~~-l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          171 IVP-LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE  211 (291)
T ss_dssp             CGG-GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEE
T ss_pred             chh-hcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCCc
Confidence            333 5566666666666322   2333445666666666665

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.52  E-value=6.2e-14  Score=123.64  Aligned_cols=163  Identities=18%  Similarity=0.228  Sum_probs=101.3

Q ss_pred             ccccccEEEecCCCccchhccccccchhccccccCCCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCccc
Q 018478           63 TSYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILP  142 (355)
Q Consensus        63 ~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  142 (355)
                      .+++|+.|+++++ .++.+             +....+++|+.|++++|. +..+++ +..+++|++|++++|. +..++
T Consensus        44 ~l~~L~~L~l~~~-~i~~~-------------~~~~~l~~L~~L~L~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~  106 (291)
T 1h6t_A           44 ELNSIDQIIANNS-DIKSV-------------QGIQYLPNVTKLFLNGNK-LTDIKP-LANLKNLGWLFLDENK-VKDLS  106 (291)
T ss_dssp             HHHTCCEEECTTS-CCCCC-------------TTGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC-CCCGG
T ss_pred             hcCcccEEEccCC-CcccC-------------hhHhcCCCCCEEEccCCc-cCCCcc-cccCCCCCEEECCCCc-CCCCh
Confidence            3777888888775 44554             434445788888888876 666665 7778888888888876 55554


Q ss_pred             ccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEccccCcCcccccccCCCCCceEEEeecCcC---CCCCCCCcc
Q 018478          143 SGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLE---EDGLPTNLH  219 (355)
Q Consensus       143 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~---~~~~~~~L~  219 (355)
                      . +..+++|+.|++++| .+..+ ..+..+++|+.|++++|. ++.+ ..+..+++|++|+++.+.+.   ....+++|+
T Consensus       107 ~-l~~l~~L~~L~L~~n-~i~~~-~~l~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~  181 (291)
T 1h6t_A          107 S-LKDLKKLKSLSLEHN-GISDI-NGLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQ  181 (291)
T ss_dssp             G-GTTCTTCCEEECTTS-CCCCC-GGGGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCC
T ss_pred             h-hccCCCCCEEECCCC-cCCCC-hhhcCCCCCCEEEccCCc-CCcc-hhhccCCCCCEEEccCCccccchhhcCCCccC
Confidence            3 777888888888876 45555 345567788888888753 4444 45666666666666532222   233345555


Q ss_pred             EEEecCCcchhhhhhhhcccCCCCCccceeEecc
Q 018478          220 SLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEG  253 (355)
Q Consensus       220 ~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  253 (355)
                      .|++++|.. +..+.     +..+++|+.|++++
T Consensus       182 ~L~L~~N~i-~~l~~-----l~~l~~L~~L~l~~  209 (291)
T 1h6t_A          182 NLYLSKNHI-SDLRA-----LAGLKNLDVLELFS  209 (291)
T ss_dssp             EEECCSSCC-CBCGG-----GTTCTTCSEEEEEE
T ss_pred             EEECCCCcC-CCChh-----hccCCCCCEEECcC
Confidence            555555532 22221     44455555555554

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.51  E-value=1.6e-13  Score=131.33  Aligned_cols=161  Identities=19%  Similarity=0.222  Sum_probs=79.5

Q ss_pred             CcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEE
Q 018478          101 PSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVI  180 (355)
Q Consensus       101 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l  180 (355)
                      ++|+.|++++|. ++.+|   ..+++|++|++++|. ++.+|. +..  +|+.|++++| .++.+|.   .+++|+.|++
T Consensus        80 ~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L~~L~Ls~N-~l~~lp~---~l~~L~~L~L  147 (571)
T 3cvr_A           80 PQITVLEITQNA-LISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SLKHLDVDNN-QLTMLPE---LPALLEYINA  147 (571)
T ss_dssp             TTCSEEECCSSC-CSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TCCEEECCSS-CCSCCCC---CCTTCCEEEC
T ss_pred             CCCCEEECcCCC-Ccccc---cccCCCCEEEccCCC-CCCcch-hhc--CCCEEECCCC-cCCCCCC---cCccccEEeC
Confidence            556666666665 55555   335666666666655 444554 333  5666666665 4444554   3456666666


Q ss_pred             ccccCcCcccccccCCCCCceEEEeecCcCCCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccc
Q 018478          181 RWCGRLEALPKGLHNLKSLQKLTIGKGGLEEDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVS  260 (355)
Q Consensus       181 ~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  260 (355)
                      ++|. ++.+|.   .++                   +|+.|++++|... .++.     +.  ++|++|++++  +.++.
T Consensus       148 s~N~-l~~lp~---~l~-------------------~L~~L~Ls~N~L~-~lp~-----l~--~~L~~L~Ls~--N~L~~  194 (571)
T 3cvr_A          148 DNNQ-LTMLPE---LPT-------------------SLEVLSVRNNQLT-FLPE-----LP--ESLEALDVST--NLLES  194 (571)
T ss_dssp             CSSC-CSCCCC---CCT-------------------TCCEEECCSSCCS-CCCC-----CC--TTCCEEECCS--SCCSS
T ss_pred             CCCc-cCcCCC---cCC-------------------CcCEEECCCCCCC-Ccch-----hh--CCCCEEECcC--CCCCc
Confidence            6542 333443   334                   4555555554422 1221     11  4555555555  34445


Q ss_pred             cCccccccCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEeeCCC
Q 018478          261 FPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGC  310 (355)
Q Consensus       261 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~  310 (355)
                      +|. +..  ......+.|+.|++++ +.++.+|..+..+++|+.|++++|
T Consensus       195 lp~-~~~--~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~N  240 (571)
T 3cvr_A          195 LPA-VPV--RNHHSEETEIFFRCRE-NRITHIPENILSLDPTCTIILEDN  240 (571)
T ss_dssp             CCC-CC----------CCEEEECCS-SCCCCCCGGGGGSCTTEEEECCSS
T ss_pred             hhh-HHH--hhhcccccceEEecCC-CcceecCHHHhcCCCCCEEEeeCC
Confidence            544 200  0000011126666665 455556655555666666666665

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.50  E-value=1.1e-13  Score=114.79  Aligned_cols=125  Identities=16%  Similarity=0.166  Sum_probs=56.5

Q ss_pred             CCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEE
Q 018478          100 PPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVV  179 (355)
Q Consensus       100 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~  179 (355)
                      +++|+.|++++|. +..++ .+..+++|++|++++|......+..++.+++|+.|++++|......+..+..+++|+.|+
T Consensus        65 l~~L~~L~l~~n~-~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~  142 (197)
T 4ezg_A           65 AHNIKDLTINNIH-ATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSID  142 (197)
T ss_dssp             CTTCSEEEEESCC-CSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEE
T ss_pred             CCCCCEEEccCCC-CCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEE
Confidence            3455555555542 33332 344455555555555442222334444555555555555422222333344445555555


Q ss_pred             EccccCcCcccccccCCCCCceEEEeecCcC---CCCCCCCccEEEecCCc
Q 018478          180 IRWCGRLEALPKGLHNLKSLQKLTIGKGGLE---EDGLPTNLHSLDIRGNM  227 (355)
Q Consensus       180 l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~---~~~~~~~L~~L~l~~~~  227 (355)
                      +++|..++.+| .+..+++|++|+++.+.+.   ....+++|+.|++++|.
T Consensus       143 L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          143 LSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             CCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEECBC-
T ss_pred             ccCCCCccccH-hhcCCCCCCEEECCCCCCcChHHhccCCCCCEEEeeCcc
Confidence            55543344443 4455555555555522222   22334556666666554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.49  E-value=7.8e-14  Score=115.71  Aligned_cols=144  Identities=13%  Similarity=0.148  Sum_probs=115.5

Q ss_pred             CCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEE
Q 018478          100 PPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVV  179 (355)
Q Consensus       100 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~  179 (355)
                      +++|+.|++++|. +..+| .+..+++|++|++++|. +..++ .+..+++|+.|++++|..-...+..+..+++|+.|+
T Consensus        43 l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~l~~n~-~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           43 MNSLTYITLANIN-VTDLT-GIEYAHNIKDLTINNIH-ATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HHTCCEEEEESSC-CSCCT-TGGGCTTCSEEEEESCC-CSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             cCCccEEeccCCC-ccChH-HHhcCCCCCEEEccCCC-CCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            4689999999987 77777 68889999999999985 66554 688899999999999743334677788899999999


Q ss_pred             EccccCcCcccccccCCCCCceEEEeecC-cC---CCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecc
Q 018478          180 IRWCGRLEALPKGLHNLKSLQKLTIGKGG-LE---EDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEG  253 (355)
Q Consensus       180 l~~~~~~~~~p~~l~~~~~L~~L~l~~~~-i~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  253 (355)
                      +++|......+..+..+++|++|+++.+. +.   ....+++|+.|++++|... ..+   .  +..+++|++|++++
T Consensus       119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~-~~~---~--l~~l~~L~~L~l~~  190 (197)
T 4ezg_A          119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVH-DYR---G--IEDFPKLNQLYAFS  190 (197)
T ss_dssp             CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCC-CCT---T--GGGCSSCCEEEECB
T ss_pred             ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCc-ChH---H--hccCCCCCEEEeeC
Confidence            99976555567788999999999998443 33   3456789999999998743 333   2  77889999999998

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.48  E-value=2.2e-13  Score=130.48  Aligned_cols=129  Identities=26%  Similarity=0.348  Sum_probs=86.1

Q ss_pred             CcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccccchhccccccCCCCCcccEEEEc
Q 018478           30 SLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQ  109 (355)
Q Consensus        30 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~~~~~~L~~L~l~  109 (355)
                      +|+.|+++++ .+..+|...              +++|+.|+++++ .++.+             +  ..+++|+.|+++
T Consensus        60 ~L~~L~Ls~n-~L~~lp~~l--------------~~~L~~L~Ls~N-~l~~i-------------p--~~l~~L~~L~Ls  108 (571)
T 3cvr_A           60 QFSELQLNRL-NLSSLPDNL--------------PPQITVLEITQN-ALISL-------------P--ELPASLEYLDAC  108 (571)
T ss_dssp             TCSEEECCSS-CCSCCCSCC--------------CTTCSEEECCSS-CCSCC-------------C--CCCTTCCEEECC
T ss_pred             CccEEEeCCC-CCCccCHhH--------------cCCCCEEECcCC-CCccc-------------c--cccCCCCEEEcc
Confidence            6777777774 466666654              567788887764 45566             6  445778888888


Q ss_pred             cCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEccccCcCcc
Q 018478          110 GCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEAL  189 (355)
Q Consensus       110 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~  189 (355)
                      +|. +..+|. +..  +|++|++++|. ++.+|.   .+++|+.|++++| .++.+|.   .+++|+.|++++|. ++.+
T Consensus       109 ~N~-l~~ip~-l~~--~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N~-L~~l  175 (571)
T 3cvr_A          109 DNR-LSTLPE-LPA--SLKHLDVDNNQ-LTMLPE---LPALLEYINADNN-QLTMLPE---LPTSLEVLSVRNNQ-LTFL  175 (571)
T ss_dssp             SSC-CSCCCC-CCT--TCCEEECCSSC-CSCCCC---CCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC-CSCC
T ss_pred             CCC-CCCcch-hhc--CCCEEECCCCc-CCCCCC---cCccccEEeCCCC-ccCcCCC---cCCCcCEEECCCCC-CCCc
Confidence            776 666666 543  78888888776 555665   4677888888776 5666665   35678888887753 4556


Q ss_pred             cccccCCCCCceEEEe
Q 018478          190 PKGLHNLKSLQKLTIG  205 (355)
Q Consensus       190 p~~l~~~~~L~~L~l~  205 (355)
                      |. +.  ++|+.|+++
T Consensus       176 p~-l~--~~L~~L~Ls  188 (571)
T 3cvr_A          176 PE-LP--ESLEALDVS  188 (571)
T ss_dssp             CC-CC--TTCCEEECC
T ss_pred             ch-hh--CCCCEEECc
Confidence            55 43  566666655

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.46  E-value=1.9e-14  Score=131.00  Aligned_cols=224  Identities=17%  Similarity=0.180  Sum_probs=152.0

Q ss_pred             CCCCcccEEEEccCcchhchh-----hhccCCC-CCcEEEeeccCCcCcccccccCC-----CCCceEeccccCCCcCCC
Q 018478           98 NLPPSLKSLRVQGCSKLESIA-----ETLDNST-SLETIHIFYCENMKILPSGLHNL-----RQLQEISIEGCGNLESFP  166 (355)
Q Consensus        98 ~~~~~L~~L~l~~~~~~~~~~-----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~l~~~~  166 (355)
                      ..+++|+.|++++|. +...+     ..+..++ +|++|++++|......+..+..+     ++|+.|++++|. ++..+
T Consensus        19 ~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~   96 (362)
T 3goz_A           19 SIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKS   96 (362)
T ss_dssp             TSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSC
T ss_pred             hCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-CChHH
Confidence            555679999999998 65543     5677788 99999999997333334445543     899999999984 54433


Q ss_pred             -C----CCCCC-CCcceEEEccccCcCccc-cc----ccC-CCCCceEEEeecCcCCCC----------CCCCccEEEec
Q 018478          167 -E----GGLPC-AKLKEVVIRWCGRLEALP-KG----LHN-LKSLQKLTIGKGGLEEDG----------LPTNLHSLDIR  224 (355)
Q Consensus       167 -~----~~~~~-~~L~~L~l~~~~~~~~~p-~~----l~~-~~~L~~L~l~~~~i~~~~----------~~~~L~~L~l~  224 (355)
                       .    .+..+ ++|+.|++++|. ++..+ ..    +.. .++|++|+++.+.+...+          .+++|+.|+++
T Consensus        97 ~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls  175 (362)
T 3goz_A           97 SDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLR  175 (362)
T ss_dssp             HHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECT
T ss_pred             HHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeec
Confidence             2    13333 799999999976 44333 23    334 369999999966665322          23599999999


Q ss_pred             CCcchhhhhhhhcccCCCC-CccceeEecccCCcccc-----cCccccccCCCCCCCCccceEEeccCCCcccc-----c
Q 018478          225 GNMEIWKSMIEWGQGFHRF-SSLRELRIEGCDDDMVS-----FPPEDIRMGTTLPLPTSLTSLAIFSFPNLERL-----S  293 (355)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-----~  293 (355)
                      +|.........+...+..+ ++|++|++++  +.+..     ++..+.      ..+++|++|++++ +.++..     .
T Consensus       176 ~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~--N~i~~~~~~~l~~~l~------~~~~~L~~L~Ls~-N~l~~~~~~~l~  246 (362)
T 3goz_A          176 GNNLASKNCAELAKFLASIPASVTSLDLSA--NLLGLKSYAELAYIFS------SIPNHVVSLNLCL-NCLHGPSLENLK  246 (362)
T ss_dssp             TSCGGGSCHHHHHHHHHTSCTTCCEEECTT--SCGGGSCHHHHHHHHH------HSCTTCCEEECCS-SCCCCCCHHHHH
T ss_pred             CCCCchhhHHHHHHHHHhCCCCCCEEECCC--CCCChhHHHHHHHHHh------cCCCCceEEECcC-CCCCcHHHHHHH
Confidence            9975544332222224556 5999999998  45555     333331      1246899999999 466543     3


Q ss_pred             ccCCCCCCccEEeeCCCCCCcccCCC---------CCCCCccEEEecCCc
Q 018478          294 SSIVDLQNLTSLYLVGCPKLKYFPEK---------GLPSSLLELWIGGCP  334 (355)
Q Consensus       294 ~~~~~~~~L~~L~l~~~~~l~~~~~~---------~~~~~L~~L~l~~c~  334 (355)
                      ..+..+++|++|++++| ++..+...         ...++|++|++++++
T Consensus       247 ~~~~~l~~L~~L~L~~n-~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          247 LLKDSLKHLQTVYLDYD-IVKNMSKEQCKALGAAFPNIQKIILVDKNGKE  295 (362)
T ss_dssp             HTTTTTTTCSEEEEEHH-HHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred             HHHhcCCCccEEEeccC-CccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence            34578899999999998 43333221         125789999999886

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.46  E-value=4e-13  Score=129.91  Aligned_cols=163  Identities=17%  Similarity=0.226  Sum_probs=111.0

Q ss_pred             ccccccEEEecCCCccchhccccccchhccccccCCCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCccc
Q 018478           63 TSYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILP  142 (355)
Q Consensus        63 ~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  142 (355)
                      .+++|+.|+++++ .+..+             +....+++|+.|++++|. +..+++ +..+++|+.|++++|. +..++
T Consensus        41 ~L~~L~~L~l~~n-~i~~l-------------~~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~  103 (605)
T 1m9s_A           41 ELNSIDQIIANNS-DIKSV-------------QGIQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDENK-IKDLS  103 (605)
T ss_dssp             HHTTCCCCBCTTC-CCCCC-------------TTGGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSSC-CCCCT
T ss_pred             cCCCCCEEECcCC-CCCCC-------------hHHccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCCC-CCCCh
Confidence            3788888888775 34555             444456788888888877 666665 7778888888888876 55554


Q ss_pred             ccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEccccCcCcccccccCCCCCceEEEeecCcC---CCCCCCCcc
Q 018478          143 SGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLE---EDGLPTNLH  219 (355)
Q Consensus       143 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~---~~~~~~~L~  219 (355)
                       .+..+++|+.|++++| .+..++ .+..+++|+.|++++|. ++.+ ..+..+++|+.|+++.+.+.   ....+++|+
T Consensus       104 -~l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~  178 (605)
T 1m9s_A          104 -SLKDLKKLKSLSLEHN-GISDIN-GLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQ  178 (605)
T ss_dssp             -TSTTCTTCCEEECTTS-CCCCCG-GGGGCTTCSEEECCSSC-CCCC-GGGGSCTTCSEEECCSSCCCCCGGGTTCTTCC
T ss_pred             -hhccCCCCCEEEecCC-CCCCCc-cccCCCccCEEECCCCc-cCCc-hhhcccCCCCEEECcCCcCCCchhhccCCCCC
Confidence             5777888888888876 455543 46667888888888753 4444 46777778888877733332   244566777


Q ss_pred             EEEecCCcchhhhhhhhcccCCCCCccceeEecc
Q 018478          220 SLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEG  253 (355)
Q Consensus       220 ~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  253 (355)
                      .|++++|... ..+.     +..+++|+.|++++
T Consensus       179 ~L~Ls~N~i~-~l~~-----l~~l~~L~~L~L~~  206 (605)
T 1m9s_A          179 NLYLSKNHIS-DLRA-----LAGLKNLDVLELFS  206 (605)
T ss_dssp             EEECCSSCCC-BCGG-----GTTCTTCSEEECCS
T ss_pred             EEECcCCCCC-CChH-----HccCCCCCEEEccC
Confidence            7777776533 2322     56677777777776

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.44  E-value=4.6e-13  Score=129.45  Aligned_cols=172  Identities=19%  Similarity=0.238  Sum_probs=135.5

Q ss_pred             cCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEccccCcCcccccccCCCCCce
Q 018478          122 DNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQK  201 (355)
Q Consensus       122 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~  201 (355)
                      ..+++|+.|++.+|. +..++ .+..+++|+.|++++| .+..++. +..+++|+.|++++| .+..+| .+..+++|+.
T Consensus        40 ~~L~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~  113 (605)
T 1m9s_A           40 NELNSIDQIIANNSD-IKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKS  113 (605)
T ss_dssp             HHHTTCCCCBCTTCC-CCCCT-TGGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCE
T ss_pred             hcCCCCCEEECcCCC-CCCCh-HHccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCE
Confidence            447899999999887 67675 5888999999999997 5666665 777899999999996 456655 7899999999


Q ss_pred             EEEeec---CcCCCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCcc
Q 018478          202 LTIGKG---GLEEDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSL  278 (355)
Q Consensus       202 L~l~~~---~i~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L  278 (355)
                      |+++.+   .++....+++|+.|++++|.... ..   .  +..+++|+.|++++  +.+..+++ +       ..+++|
T Consensus       114 L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~-l~---~--l~~l~~L~~L~Ls~--N~l~~~~~-l-------~~l~~L  177 (605)
T 1m9s_A          114 LSLEHNGISDINGLVHLPQLESLYLGNNKITD-IT---V--LSRLTKLDTLSLED--NQISDIVP-L-------AGLTKL  177 (605)
T ss_dssp             EECTTSCCCCCGGGGGCTTCSEEECCSSCCCC-CG---G--GGSCTTCSEEECCS--SCCCCCGG-G-------TTCTTC
T ss_pred             EEecCCCCCCCccccCCCccCEEECCCCccCC-ch---h--hcccCCCCEEECcC--CcCCCchh-h-------ccCCCC
Confidence            999843   34445567899999999987443 32   2  77899999999998  45666654 3       577899


Q ss_pred             ceEEeccCCCcccccccCCCCCCccEEeeCCCCCCcccCC
Q 018478          279 TSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPE  318 (355)
Q Consensus       279 ~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~  318 (355)
                      +.|++++ +.+..++ .+..+++|+.|++++| ++...|.
T Consensus       178 ~~L~Ls~-N~i~~l~-~l~~l~~L~~L~L~~N-~l~~~p~  214 (605)
T 1m9s_A          178 QNLYLSK-NHISDLR-ALAGLKNLDVLELFSQ-ECLNKPI  214 (605)
T ss_dssp             CEEECCS-SCCCBCG-GGTTCTTCSEEECCSE-EEECCCC
T ss_pred             CEEECcC-CCCCCCh-HHccCCCCCEEEccCC-cCcCCcc
Confidence            9999998 5777775 4788999999999998 5665544

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.41  E-value=2.2e-13  Score=118.23  Aligned_cols=138  Identities=17%  Similarity=0.196  Sum_probs=85.0

Q ss_pred             CcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEE
Q 018478          101 PSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVI  180 (355)
Q Consensus       101 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l  180 (355)
                      .++..++++.+. +..++ .+..+++|++|++++|. +..++ .+..+++|+.|++++| .+..++. +..+++|+.|++
T Consensus        19 ~~l~~l~l~~~~-i~~~~-~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L   92 (263)
T 1xeu_A           19 ANAVKQNLGKQS-VTDLV-SQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHHTCSC-TTSEE-CHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEEC
T ss_pred             HHHHHHHhcCCC-ccccc-chhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEEC
Confidence            456777777766 66555 45567888999988876 66676 5778888999999887 5666665 677888888888


Q ss_pred             ccccCcCcccccccCCCCCceEEEeecC---cCCCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecc
Q 018478          181 RWCGRLEALPKGLHNLKSLQKLTIGKGG---LEEDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEG  253 (355)
Q Consensus       181 ~~~~~~~~~p~~l~~~~~L~~L~l~~~~---i~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  253 (355)
                      ++| .++.+|.. .. ++|++|+++.+.   ++....+++|+.|++++|.... .+.     +..+++|++|++++
T Consensus        93 ~~N-~l~~l~~~-~~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~-~~~-----l~~l~~L~~L~L~~  159 (263)
T 1xeu_A           93 NRN-RLKNLNGI-PS-ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKS-IVM-----LGFLSKLEVLDLHG  159 (263)
T ss_dssp             CSS-CCSCCTTC-CC-SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCB-CGG-----GGGCTTCCEEECTT
T ss_pred             CCC-ccCCcCcc-cc-CcccEEEccCCccCCChhhcCcccccEEECCCCcCCC-ChH-----HccCCCCCEEECCC
Confidence            885 44555432 22 566666665222   2223344455555555544221 211     34445555555554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.39  E-value=3.5e-13  Score=117.01  Aligned_cols=147  Identities=22%  Similarity=0.309  Sum_probs=106.4

Q ss_pred             CCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceE
Q 018478           99 LPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEV  178 (355)
Q Consensus        99 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L  178 (355)
                      .+++|+.|++++|. +..++ .+..+++|++|++++|. +..++. +..+++|+.|++++| .++.+|....  ++|+.|
T Consensus        39 ~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L~~N-~l~~l~~~~~--~~L~~L  111 (263)
T 1xeu_A           39 ELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSVNRN-RLKNLNGIPS--ACLSRL  111 (263)
T ss_dssp             HHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEECCSS-CCSCCTTCCC--SSCCEE
T ss_pred             hcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEECCCC-ccCCcCcccc--CcccEE
Confidence            34678888888876 66666 56778888888888876 666665 778888888888886 5666665333  788888


Q ss_pred             EEccccCcCcccccccCCCCCceEEEeecCc---CCCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccC
Q 018478          179 VIRWCGRLEALPKGLHNLKSLQKLTIGKGGL---EEDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCD  255 (355)
Q Consensus       179 ~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  255 (355)
                      ++++| .++.++ .+..+++|++|+++.+.+   +....+++|+.|++++|..... .   .  +..+++|+.|++++  
T Consensus       112 ~L~~N-~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~-~---~--l~~l~~L~~L~l~~--  181 (263)
T 1xeu_A          112 FLDNN-ELRDTD-SLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNT-G---G--LTRLKKVNWIDLTG--  181 (263)
T ss_dssp             ECCSS-CCSBSG-GGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBC-T---T--STTCCCCCEEEEEE--
T ss_pred             EccCC-ccCCCh-hhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcch-H---H--hccCCCCCEEeCCC--
Confidence            88885 455554 578888888888884433   3345668899999998874432 2   2  78889999999998  


Q ss_pred             CcccccC
Q 018478          256 DDMVSFP  262 (355)
Q Consensus       256 ~~~~~~~  262 (355)
                      +.+...+
T Consensus       182 N~~~~~~  188 (263)
T 1xeu_A          182 QKCVNEP  188 (263)
T ss_dssp             EEEECCC
T ss_pred             CcccCCc
Confidence            4444444

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.36  E-value=9.7e-12  Score=104.87  Aligned_cols=107  Identities=10%  Similarity=0.176  Sum_probs=59.7

Q ss_pred             CCcccEEEEccCcchhch-hhhccCCCCCcEEEeeccCCcCcccc-cccCCCCCceEeccccCCCcCC-CCCCCCCCCcc
Q 018478          100 PPSLKSLRVQGCSKLESI-AETLDNSTSLETIHIFYCENMKILPS-GLHNLRQLQEISIEGCGNLESF-PEGGLPCAKLK  176 (355)
Q Consensus       100 ~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~  176 (355)
                      +++|+.|++++|. +..+ |..+..+++|++|++++|. +..++. .+..+++|+.|++++| .+..+ |..+..+++|+
T Consensus        55 l~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~  131 (220)
T 2v9t_B           55 YKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYGNK-ITELPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLN  131 (220)
T ss_dssp             CTTCCEEECCSSC-CCEECTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred             CCCCCEEECCCCc-CCCcCHHHhhCCcCCCEEECCCCc-CCccCHhHccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCC
Confidence            3566666666665 4333 4556666666666666655 444443 2455666666666665 34433 34455566666


Q ss_pred             eEEEccccCcCcccccccCCCCCceEEEeecCc
Q 018478          177 EVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGL  209 (355)
Q Consensus       177 ~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i  209 (355)
                      .|++++|......+..+..+++|++|+++.+.+
T Consensus       132 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B          132 LLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             EEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            666666433222223456666666666654333

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.35  E-value=8.1e-12  Score=105.35  Aligned_cols=103  Identities=11%  Similarity=0.202  Sum_probs=54.0

Q ss_pred             CCcccEEEEccCcchhchh-hhccCCCCCcEEEeeccCCcCcc-cccccCCCCCceEeccccCCCcCC-CCCCCCCCCcc
Q 018478          100 PPSLKSLRVQGCSKLESIA-ETLDNSTSLETIHIFYCENMKIL-PSGLHNLRQLQEISIEGCGNLESF-PEGGLPCAKLK  176 (355)
Q Consensus       100 ~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~  176 (355)
                      +++|+.|++++|. +..++ ..+..+++|++|++++|. +..+ +..+..+++|+.|++++| .+..+ |..+..+++|+
T Consensus        56 l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~  132 (220)
T 2v70_A           56 LPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSNR-LENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVR  132 (220)
T ss_dssp             CTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCCCCGGGGTTCSSCCEEECTTS-CCCCBCTTSSTTCTTCS
T ss_pred             CCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECCCCc-cCccCHhHhcCCcCCCEEECCCC-cCCeECHhHcCCCccCC
Confidence            3456666666555 44443 245556666666666655 3333 334555666666666665 33333 44455566666


Q ss_pred             eEEEccccCcCcccccccCCCCCceEEEe
Q 018478          177 EVVIRWCGRLEALPKGLHNLKSLQKLTIG  205 (355)
Q Consensus       177 ~L~l~~~~~~~~~p~~l~~~~~L~~L~l~  205 (355)
                      .|++++|......|..+..+++|++|+++
T Consensus       133 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  161 (220)
T 2v70_A          133 LLSLYDNQITTVAPGAFDTLHSLSTLNLL  161 (220)
T ss_dssp             EEECTTSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             EEECCCCcCCEECHHHhcCCCCCCEEEec
Confidence            66666643322224455555555554443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.34  E-value=1.5e-11  Score=104.41  Aligned_cols=80  Identities=18%  Similarity=0.279  Sum_probs=35.8

Q ss_pred             CcccEEEEccCcchhchhh-hccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCC-CCCCCCCcceE
Q 018478          101 PSLKSLRVQGCSKLESIAE-TLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPE-GGLPCAKLKEV  178 (355)
Q Consensus       101 ~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L  178 (355)
                      ++|+.|++++|. +..++. .+..+++|++|++++|. +..+|..+..+++|+.|++++| .+..++. .+..+++|+.|
T Consensus        88 ~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L  164 (229)
T 3e6j_A           88 TQLTVLDLGTNQ-LTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHA  164 (229)
T ss_dssp             TTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred             CCcCEEECCCCc-CCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEE
Confidence            445555555544 333332 23444555555555444 3344444444455555555444 3333332 23334444444


Q ss_pred             EEccc
Q 018478          179 VIRWC  183 (355)
Q Consensus       179 ~l~~~  183 (355)
                      ++++|
T Consensus       165 ~l~~N  169 (229)
T 3e6j_A          165 YLFGN  169 (229)
T ss_dssp             ECTTS
T ss_pred             EeeCC
Confidence            44443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.33  E-value=5e-12  Score=105.62  Aligned_cols=11  Identities=18%  Similarity=-0.085  Sum_probs=5.5

Q ss_pred             CCccceeEecc
Q 018478          243 FSSLRELRIEG  253 (355)
Q Consensus       243 l~~L~~L~l~~  253 (355)
                      +++|+.|+++.
T Consensus       164 ~~~l~~L~~~~  174 (208)
T 2o6s_A          164 CPGIRYLSEWI  174 (208)
T ss_dssp             TTTTHHHHHHH
T ss_pred             CCCHHHHHHHH
Confidence            34455555544

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.33  E-value=2e-11  Score=102.93  Aligned_cols=148  Identities=12%  Similarity=0.101  Sum_probs=115.2

Q ss_pred             cEEeecccccCcccccCccCCCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccccc
Q 018478            9 EILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELS   88 (355)
Q Consensus         9 ~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~   88 (355)
                      +.+++++ ..++.+| ..+++.+++|++++ +.+..++...          .+..+++|++|+++++ .++.+       
T Consensus        14 ~~l~~s~-n~l~~iP-~~~~~~~~~L~L~~-N~l~~~~~~~----------~~~~l~~L~~L~L~~N-~i~~i-------   72 (220)
T 2v70_A           14 TTVDCSN-QKLNKIP-EHIPQYTAELRLNN-NEFTVLEATG----------IFKKLPQLRKINFSNN-KITDI-------   72 (220)
T ss_dssp             TEEECCS-SCCSSCC-SCCCTTCSEEECCS-SCCCEECCCC----------CGGGCTTCCEEECCSS-CCCEE-------
T ss_pred             CEeEeCC-CCcccCc-cCCCCCCCEEEcCC-CcCCccCchh----------hhccCCCCCEEECCCC-cCCEE-------
Confidence            5788875 4677777 45668899999999 5677774321          1466999999999985 45555       


Q ss_pred             hhcccccc--CCCCCcccEEEEccCcchhchh-hhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCC
Q 018478           89 ATLESLEV--GNLPPSLKSLRVQGCSKLESIA-ETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESF  165 (355)
Q Consensus        89 ~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~  165 (355)
                            +.  ...+++|+.|++++|. +..++ ..+..+++|++|++++|......+..+..+++|+.|++++| .++.+
T Consensus        73 ------~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~  144 (220)
T 2v70_A           73 ------EEGAFEGASGVNEILLTSNR-LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTV  144 (220)
T ss_dssp             ------CTTTTTTCTTCCEEECCSSC-CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCB
T ss_pred             ------CHHHhCCCCCCCEEECCCCc-cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEE
Confidence                  33  2456899999999998 66554 55888999999999999844444678899999999999998 56665


Q ss_pred             -CCCCCCCCCcceEEEccccC
Q 018478          166 -PEGGLPCAKLKEVVIRWCGR  185 (355)
Q Consensus       166 -~~~~~~~~~L~~L~l~~~~~  185 (355)
                       |..+..+++|+.|++++|..
T Consensus       145 ~~~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A          145 APGAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             CTTTTTTCTTCCEEECCSCCE
T ss_pred             CHHHhcCCCCCCEEEecCcCC
Confidence             67788899999999999753

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.31  E-value=2.1e-11  Score=102.84  Aligned_cols=125  Identities=13%  Similarity=0.206  Sum_probs=75.1

Q ss_pred             CcccEEEEccCcchhchhh-hccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCC-CCCCCCcceE
Q 018478          101 PSLKSLRVQGCSKLESIAE-TLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEG-GLPCAKLKEV  178 (355)
Q Consensus       101 ~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L  178 (355)
                      ++++.|++++|. +..+++ .+..+++|++|++++|......+..+..+++|+.|++++| .++.+|.. +..+++|+.|
T Consensus        32 ~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L  109 (220)
T 2v9t_B           32 ETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KITELPKSLFEGLFSLQLL  109 (220)
T ss_dssp             TTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred             cCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-cCCccCHhHccCCCCCCEE
Confidence            566777777665 554443 5566677777777776633333556666777777777765 45555543 3456677777


Q ss_pred             EEccccCcCcccccccCCCCCceEEEeecCcCC-----CCCCCCccEEEecCCc
Q 018478          179 VIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEE-----DGLPTNLHSLDIRGNM  227 (355)
Q Consensus       179 ~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~-----~~~~~~L~~L~l~~~~  227 (355)
                      ++++|......|..+..+++|++|+++.+.+..     ...+++|+.|++++|.
T Consensus       110 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B          110 LLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence            777654333334566667777777776333332     2234667777777665

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.31  E-value=2e-11  Score=103.58  Aligned_cols=123  Identities=20%  Similarity=0.290  Sum_probs=70.8

Q ss_pred             CcccEEEEccCcchhch-hhhccCCCCCcEEEeeccCCcCccc-ccccCCCCCceEeccccCCCcCCCCC-CCCCCCcce
Q 018478          101 PSLKSLRVQGCSKLESI-AETLDNSTSLETIHIFYCENMKILP-SGLHNLRQLQEISIEGCGNLESFPEG-GLPCAKLKE  177 (355)
Q Consensus       101 ~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~  177 (355)
                      ++|+.|++++|. +..+ |..+..+++|++|++++|. +..++ ..+..+++|+.|++++| .++.++.. +..+++|+.
T Consensus        40 ~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~  116 (229)
T 3e6j_A           40 TNAQILYLHDNQ-ITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKE  116 (229)
T ss_dssp             TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred             CCCCEEEcCCCc-cCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCC-cCCccChhHhCcchhhCe
Confidence            566666666665 4333 4455566666666666655 44444 23455666666666665 44454432 345666666


Q ss_pred             EEEccccCcCcccccccCCCCCceEEEeecCcCC-----CCCCCCccEEEecCCc
Q 018478          178 VVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEE-----DGLPTNLHSLDIRGNM  227 (355)
Q Consensus       178 L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~-----~~~~~~L~~L~l~~~~  227 (355)
                      |++++| .++.+|..+..+++|++|+++.+.+..     ...+++|+.|++.+|.
T Consensus       117 L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          117 LFMCCN-KLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             EECCSS-CCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             EeccCC-cccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence            666664 344566666666666666666333222     2334677777777775

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.30  E-value=9.9e-12  Score=112.96  Aligned_cols=158  Identities=21%  Similarity=0.246  Sum_probs=82.1

Q ss_pred             cEEeecccccCcccccCccCCCcceEecccCccccccccccCcCCCCCCCcccc-ccccccEEEecCCCccchhcccccc
Q 018478            9 EILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRY-TSYLLEELCISSCRSLTSIFSKNEL   87 (355)
Q Consensus         9 ~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~n~~   87 (355)
                      +.+++++ ..++.+| ..+++.++.|++++ +.+..++...           +. .+++|+.|+++++ .++.+      
T Consensus        21 ~~l~c~~-~~l~~iP-~~~~~~l~~L~Ls~-N~l~~l~~~~-----------~~~~l~~L~~L~L~~N-~i~~i------   79 (361)
T 2xot_A           21 NILSCSK-QQLPNVP-QSLPSYTALLDLSH-NNLSRLRAEW-----------TPTRLTNLHSLLLSHN-HLNFI------   79 (361)
T ss_dssp             TEEECCS-SCCSSCC-SSCCTTCSEEECCS-SCCCEECTTS-----------SSSCCTTCCEEECCSS-CCCEE------
T ss_pred             CEEEeCC-CCcCccC-ccCCCCCCEEECCC-CCCCccChhh-----------hhhcccccCEEECCCC-cCCcc------
Confidence            3455543 3455555 23445666666666 4455555432           22 4666666666654 33433      


Q ss_pred             chhcccccc--CCCCCcccEEEEccCcchhchh-hhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcC
Q 018478           88 SATLESLEV--GNLPPSLKSLRVQGCSKLESIA-ETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLES  164 (355)
Q Consensus        88 ~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~  164 (355)
                             +.  ...+++|+.|++++|. +..++ ..+..+++|++|++++|......+..+..+++|+.|++++| .+..
T Consensus        80 -------~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~  150 (361)
T 2xot_A           80 -------SSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISR  150 (361)
T ss_dssp             -------CTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCS
T ss_pred             -------ChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCe
Confidence                   22  1334566666666665 44443 34555666666666666532223445666666666666665 4555


Q ss_pred             CCCCC----CCCCCcceEEEccccCcCccc-ccccCCC
Q 018478          165 FPEGG----LPCAKLKEVVIRWCGRLEALP-KGLHNLK  197 (355)
Q Consensus       165 ~~~~~----~~~~~L~~L~l~~~~~~~~~p-~~l~~~~  197 (355)
                      +|...    ..+++|+.|++++| .++.+| ..+..++
T Consensus       151 l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~  187 (361)
T 2xot_A          151 FPVELIKDGNKLPKLMLLDLSSN-KLKKLPLTDLQKLP  187 (361)
T ss_dssp             CCGGGTC----CTTCCEEECCSS-CCCCCCHHHHHHSC
T ss_pred             eCHHHhcCcccCCcCCEEECCCC-CCCccCHHHhhhcc
Confidence            55432    33566666666664 333333 2334443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.29  E-value=1e-11  Score=100.04  Aligned_cols=128  Identities=15%  Similarity=0.134  Sum_probs=84.9

Q ss_pred             cCCCcceEecccCcccc--ccccccCcCCCCCCCccccccccccEEEecCCCccchhccccccchhccccccCCCCCccc
Q 018478           27 LPRSLKRLDIQCCSNIR--TLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLK  104 (355)
Q Consensus        27 ~~~~L~~L~l~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~~~~~~L~  104 (355)
                      .+++|++|++++|. +.  .+|..            +..+++|+.|+++++. ++.+             .....+++|+
T Consensus        22 ~~~~L~~L~l~~n~-l~~~~i~~~------------~~~l~~L~~L~l~~n~-l~~~-------------~~~~~l~~L~   74 (168)
T 2ell_A           22 TPAAVRELVLDNCK-SNDGKIEGL------------TAEFVNLEFLSLINVG-LISV-------------SNLPKLPKLK   74 (168)
T ss_dssp             CTTSCSEEECCSCB-CBTTBCSSC------------CGGGGGCCEEEEESSC-CCCC-------------SSCCCCSSCC
T ss_pred             CcccCCEEECCCCC-CChhhHHHH------------HHhCCCCCEEeCcCCC-CCCh-------------hhhccCCCCC
Confidence            44778888888854 54  55543            2447778888887753 4444             3334456788


Q ss_pred             EEEEccCcchhc-hhhhccCCCCCcEEEeeccCCcCccc--ccccCCCCCceEeccccCCCcCCCC----CCCCCCCcce
Q 018478          105 SLRVQGCSKLES-IAETLDNSTSLETIHIFYCENMKILP--SGLHNLRQLQEISIEGCGNLESFPE----GGLPCAKLKE  177 (355)
Q Consensus       105 ~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~l~~~~~----~~~~~~~L~~  177 (355)
                      .|++++|. +.. +|..+..+++|++|++++|. +..++  ..+..+++|+.|++++| .+...|.    .+..+++|+.
T Consensus        75 ~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~  151 (168)
T 2ell_A           75 KLELSENR-IFGGLDMLAEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTY  151 (168)
T ss_dssp             EEEEESCC-CCSCCCHHHHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCE
T ss_pred             EEECcCCc-CchHHHHHHhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcE
Confidence            88888777 444 66666667888888888776 55554  56777777888888776 4555554    5556777777


Q ss_pred             EEEcccc
Q 018478          178 VVIRWCG  184 (355)
Q Consensus       178 L~l~~~~  184 (355)
                      |++++|.
T Consensus       152 L~l~~n~  158 (168)
T 2ell_A          152 LDGYDRE  158 (168)
T ss_dssp             ETTEETT
T ss_pred             ecCCCCC
Confidence            7777753

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.29  E-value=6.5e-11  Score=98.78  Aligned_cols=80  Identities=23%  Similarity=0.318  Sum_probs=36.5

Q ss_pred             CcccEEEEccCcchhchhh-hccCCCCCcEEEeeccCCcCcccc-cccCCCCCceEeccccCCCcCCCCC-CCCCCCcce
Q 018478          101 PSLKSLRVQGCSKLESIAE-TLDNSTSLETIHIFYCENMKILPS-GLHNLRQLQEISIEGCGNLESFPEG-GLPCAKLKE  177 (355)
Q Consensus       101 ~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~  177 (355)
                      ++|++|++++|. +..++. .+..+++|++|++++|. +..++. .+..+++|+.|++++| .++.++.. +..+++|+.
T Consensus        76 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~  152 (208)
T 2o6s_A           76 TSLTYLNLSTNQ-LQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQY  152 (208)
T ss_dssp             TTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCE
T ss_pred             CCcCEEECCCCc-CCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccE
Confidence            455555555554 333332 23445555555555544 333322 2344555555555554 33333322 333445555


Q ss_pred             EEEccc
Q 018478          178 VVIRWC  183 (355)
Q Consensus       178 L~l~~~  183 (355)
                      |++++|
T Consensus       153 L~l~~N  158 (208)
T 2o6s_A          153 IWLHDN  158 (208)
T ss_dssp             EECCSC
T ss_pred             EEecCC
Confidence            555543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.28  E-value=1.3e-13  Score=132.56  Aligned_cols=120  Identities=18%  Similarity=0.161  Sum_probs=60.8

Q ss_pred             CCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEccccCcCcccccccCCCCCceEEEe
Q 018478          126 SLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIG  205 (355)
Q Consensus       126 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~  205 (355)
                      .|+.|++++|. ++.+|. ++.+++|+.|++++| .++.+|..+..+++|+.|++++| .++.+| .++.+++|++|+++
T Consensus       442 ~L~~L~Ls~n~-l~~lp~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          442 DVRVLHLAHKD-LTVLCH-LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLC  516 (567)
T ss_dssp             TCSEEECTTSC-CSSCCC-GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECC
T ss_pred             CceEEEecCCC-CCCCcC-ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECC
Confidence            35555555554 444544 555555555555554 44455555555555555555553 334444 55555555555555


Q ss_pred             ecCcCC------CCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEe
Q 018478          206 KGGLEE------DGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRI  251 (355)
Q Consensus       206 ~~~i~~------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l  251 (355)
                      .+.+..      ...+++|+.|++++|.... .++.....+..+++|+.|++
T Consensus       517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~-~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGGG-SSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCCCcHHHhcCCCCCEEEecCCcCCC-CccHHHHHHHHCcccCccCC
Confidence            332221      2234566666777765332 22211101234677777753

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.27  E-value=4.6e-11  Score=107.11  Aligned_cols=99  Identities=14%  Similarity=0.130  Sum_probs=60.4

Q ss_pred             CCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccc-eEEeccCCCccccc
Q 018478          215 PTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLT-SLAIFSFPNLERLS  293 (355)
Q Consensus       215 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~l~  293 (355)
                      +++|+.+++.+|. ++.++.. .  |.++++|+.+++.+  + ++.++...+      ....+|+ .+.+.+  .++.++
T Consensus       225 ~~~L~~l~L~~n~-i~~I~~~-a--F~~~~~L~~l~l~~--n-i~~I~~~aF------~~~~~L~~~l~l~~--~l~~I~  289 (329)
T 3sb4_A          225 MPNLVSLDISKTN-ATTIPDF-T--FAQKKYLLKIKLPH--N-LKTIGQRVF------SNCGRLAGTLELPA--SVTAIE  289 (329)
T ss_dssp             CTTCCEEECTTBC-CCEECTT-T--TTTCTTCCEEECCT--T-CCEECTTTT------TTCTTCCEEEEECT--TCCEEC
T ss_pred             cCCCeEEECCCCC-cceecHh-h--hhCCCCCCEEECCc--c-cceehHHHh------hCChhccEEEEEcc--cceEEc
Confidence            4677777777654 3333322 2  66777777777766  2 566665443      4556677 777765  555554


Q ss_pred             -ccCCCCCCccEEeeCCCCCCcccCCCCC--CCCccEEE
Q 018478          294 -SSIVDLQNLTSLYLVGCPKLKYFPEKGL--PSSLLELW  329 (355)
Q Consensus       294 -~~~~~~~~L~~L~l~~~~~l~~~~~~~~--~~~L~~L~  329 (355)
                       ..|.++++|+.+++.++ +++.++...+  +++|+.++
T Consensus       290 ~~aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          290 FGAFMGCDNLRYVLATGD-KITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             TTTTTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCEEE
T ss_pred             hhhhhCCccCCEEEeCCC-ccCccchhhhcCCcchhhhc
Confidence             35567777777777665 6777766554  56666654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.25  E-value=3e-14  Score=136.91  Aligned_cols=188  Identities=13%  Similarity=0.075  Sum_probs=113.2

Q ss_pred             CCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccC-------------CcCcccccccCCCCCceEe-ccccC----
Q 018478           99 LPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCE-------------NMKILPSGLHNLRQLQEIS-IEGCG----  160 (355)
Q Consensus        99 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-------------~~~~~~~~~~~l~~L~~L~-l~~~~----  160 (355)
                      ..++|+.|++++|. ++.+|+.++.+++|+.|++++|.             .....|..++.+++|+.|+ ++.+.    
T Consensus       347 ~~~~L~~L~Ls~n~-L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L  425 (567)
T 1dce_A          347 TDEQLFRCELSVEK-STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL  425 (567)
T ss_dssp             TTTTSSSCCCCHHH-HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             cCccceeccCChhh-HHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence            34677788888776 77778777777888887775543             2233445555666666666 33220    


Q ss_pred             --------CCcCCCCCCCCCCCcceEEEccccCcCcccccccCCCCCceEEEeecCcCCCCCCCCccEEEecCCcchhhh
Q 018478          161 --------NLESFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEEDGLPTNLHSLDIRGNMEIWKS  232 (355)
Q Consensus       161 --------~l~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~~~~~~~L~~L~l~~~~~~~~~  232 (355)
                              .+..++.     ..|+.|++++| .++.+|. ++.++                   +|+.|++++|... .+
T Consensus       426 ~~l~l~~n~i~~l~~-----~~L~~L~Ls~n-~l~~lp~-~~~l~-------------------~L~~L~Ls~N~l~-~l  478 (567)
T 1dce_A          426 RSKFLLENSVLKMEY-----ADVRVLHLAHK-DLTVLCH-LEQLL-------------------LVTHLDLSHNRLR-AL  478 (567)
T ss_dssp             HHHHHHHHHHHHHHH-----TTCSEEECTTS-CCSSCCC-GGGGT-------------------TCCEEECCSSCCC-CC
T ss_pred             hhhhhhcccccccCc-----cCceEEEecCC-CCCCCcC-ccccc-------------------cCcEeecCccccc-cc
Confidence                    1111111     13555666553 3444443 44444                   4444555555432 33


Q ss_pred             hhhhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccc--cccCCCCCCccEEeeCCC
Q 018478          233 MIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERL--SSSIVDLQNLTSLYLVGC  310 (355)
Q Consensus       233 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l--~~~~~~~~~L~~L~l~~~  310 (355)
                      +.  .  +..+++|++|++++  +.++.+| .+       ..+++|+.|++++ +.++.+  |..+..+++|++|++++|
T Consensus       479 p~--~--~~~l~~L~~L~Ls~--N~l~~lp-~l-------~~l~~L~~L~Ls~-N~l~~~~~p~~l~~l~~L~~L~L~~N  543 (567)
T 1dce_A          479 PP--A--LAALRCLEVLQASD--NALENVD-GV-------ANLPRLQELLLCN-NRLQQSAAIQPLVSCPRLVLLNLQGN  543 (567)
T ss_dssp             CG--G--GGGCTTCCEEECCS--SCCCCCG-GG-------TTCSSCCEEECCS-SCCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred             ch--h--hhcCCCCCEEECCC--CCCCCCc-cc-------CCCCCCcEEECCC-CCCCCCCCcHHHhcCCCCCEEEecCC
Confidence            32  1  56777888888877  5666666 34       4667888888887 567766  677778888888888887


Q ss_pred             CCCcccCCCCC-----CCCccEEEe
Q 018478          311 PKLKYFPEKGL-----PSSLLELWI  330 (355)
Q Consensus       311 ~~l~~~~~~~~-----~~~L~~L~l  330 (355)
                       .++.++....     +++|+.|++
T Consensus       544 -~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          544 -SLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             -GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             -cCCCCccHHHHHHHHCcccCccCC
Confidence             5777655321     577777753

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.23  E-value=6.4e-11  Score=107.60  Aligned_cols=163  Identities=15%  Similarity=0.136  Sum_probs=116.4

Q ss_pred             ceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccccchhccccccC--C-CCCcccEEEE
Q 018478           32 KRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEVG--N-LPPSLKSLRV  108 (355)
Q Consensus        32 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~--~-~~~~L~~L~l  108 (355)
                      +.+++++ +.++.+|...              ...++.|+++++ .++.+             +..  . .+++|+.|++
T Consensus        21 ~~l~c~~-~~l~~iP~~~--------------~~~l~~L~Ls~N-~l~~l-------------~~~~~~~~l~~L~~L~L   71 (361)
T 2xot_A           21 NILSCSK-QQLPNVPQSL--------------PSYTALLDLSHN-NLSRL-------------RAEWTPTRLTNLHSLLL   71 (361)
T ss_dssp             TEEECCS-SCCSSCCSSC--------------CTTCSEEECCSS-CCCEE-------------CTTSSSSCCTTCCEEEC
T ss_pred             CEEEeCC-CCcCccCccC--------------CCCCCEEECCCC-CCCcc-------------ChhhhhhcccccCEEEC
Confidence            5677777 5678888765              567888999875 45555             333  2 4578999999


Q ss_pred             ccCcchhchh-hhccCCCCCcEEEeeccCCcCccc-ccccCCCCCceEeccccCCCcCC-CCCCCCCCCcceEEEccccC
Q 018478          109 QGCSKLESIA-ETLDNSTSLETIHIFYCENMKILP-SGLHNLRQLQEISIEGCGNLESF-PEGGLPCAKLKEVVIRWCGR  185 (355)
Q Consensus       109 ~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~~~  185 (355)
                      ++|. +..++ ..+..+++|++|++++|. +..++ ..+..+++|+.|++++| .+..+ +..+..+++|+.|++++| .
T Consensus        72 ~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N-~  147 (361)
T 2xot_A           72 SHNH-LNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQN-Q  147 (361)
T ss_dssp             CSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-C
T ss_pred             CCCc-CCccChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCCEEECCCC-cccEECHHHhCCcccCCEEECCCC-c
Confidence            9887 66665 457889999999999987 55554 46788899999999987 45544 567777899999999985 4


Q ss_pred             cCcccccc----cCCCCCceEEEeecCcCCCC-----CCCC--ccEEEecCCc
Q 018478          186 LEALPKGL----HNLKSLQKLTIGKGGLEEDG-----LPTN--LHSLDIRGNM  227 (355)
Q Consensus       186 ~~~~p~~l----~~~~~L~~L~l~~~~i~~~~-----~~~~--L~~L~l~~~~  227 (355)
                      ++.+|..+    ..+++|+.|+++.+.+....     .++.  ++.|++.+|.
T Consensus       148 l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~  200 (361)
T 2xot_A          148 ISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP  200 (361)
T ss_dssp             CCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred             CCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence            66666543    56888888888855555432     2233  4678888775

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.23  E-value=2.6e-09  Score=98.12  Aligned_cols=252  Identities=11%  Similarity=0.140  Sum_probs=153.0

Q ss_pred             CCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccccchhccccccCCCC-CcccEEE
Q 018478           29 RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLP-PSLKSLR  107 (355)
Q Consensus        29 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~~~~-~~L~~L~  107 (355)
                      ..++.+.+.+  .++.++...           |.++ +|+.+.+..  +++.+             ....+. .+|+.+.
T Consensus       113 ~~l~~i~ip~--~i~~I~~~a-----------F~~~-~L~~i~l~~--~i~~I-------------~~~aF~~~~L~~i~  163 (401)
T 4fdw_A          113 KGYNEIILPN--SVKSIPKDA-----------FRNS-QIAKVVLNE--GLKSI-------------GDMAFFNSTVQEIV  163 (401)
T ss_dssp             SSCSEEECCT--TCCEECTTT-----------TTTC-CCSEEECCT--TCCEE-------------CTTTTTTCCCCEEE
T ss_pred             CCccEEEECC--ccCEehHhh-----------cccC-CccEEEeCC--CccEE-------------CHHhcCCCCceEEE
Confidence            4555565553  355555443           4443 577777653  24444             222110 2567777


Q ss_pred             EccCcchhchh-hhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCC-CCCCCCCCcceEEEccccC
Q 018478          108 VQGCSKLESIA-ETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFP-EGGLPCAKLKEVVIRWCGR  185 (355)
Q Consensus       108 l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~~~~  185 (355)
                      +..  .+..+. ..|..|++|+.+.+..+. +..++.......+|+.+.+..  .++.++ ..|..|++|+.+.+..+  
T Consensus       164 lp~--~l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~~--  236 (401)
T 4fdw_A          164 FPS--TLEQLKEDIFYYCYNLKKADLSKTK-ITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPEN--  236 (401)
T ss_dssp             CCT--TCCEECSSTTTTCTTCCEEECTTSC-CSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCTT--
T ss_pred             eCC--CccEehHHHhhCcccCCeeecCCCc-ceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEecCCC--
Confidence            664  244443 345667777777776654 555654444456777777764  355554 34555677777777652  


Q ss_pred             cCcccc-cccCCCCCceEEEe--ecCcCC--CCCCCCccEEEecCCcch----hhhhhhhcccCCCCCccceeEecccCC
Q 018478          186 LEALPK-GLHNLKSLQKLTIG--KGGLEE--DGLPTNLHSLDIRGNMEI----WKSMIEWGQGFHRFSSLRELRIEGCDD  256 (355)
Q Consensus       186 ~~~~p~-~l~~~~~L~~L~l~--~~~i~~--~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~~l~~L~~L~l~~~~~  256 (355)
                      ++.++. +|.. .+|+.+.+.  ...+..  ...+++|+.+++.++...    ..+.. ..  |.++++|+.+.+..   
T Consensus       237 l~~I~~~aF~~-~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~-~a--F~~c~~L~~l~l~~---  309 (401)
T 4fdw_A          237 VSTIGQEAFRE-SGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHP-YC--LEGCPKLARFEIPE---  309 (401)
T ss_dssp             CCEECTTTTTT-CCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECT-TT--TTTCTTCCEECCCT---
T ss_pred             ccCcccccccc-CCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECH-HH--hhCCccCCeEEeCC---
Confidence            444443 4444 567777775  333333  234567777777665321    11221 12  88999999999985   


Q ss_pred             cccccCccccccCCCCCCCCccceEEeccCCCcccccc-cCCCCCCccEEeeCCCCCCcccCCCCC---CCCccEEEecC
Q 018478          257 DMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSS-SIVDLQNLTSLYLVGCPKLKYFPEKGL---PSSLLELWIGG  332 (355)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~---~~~L~~L~l~~  332 (355)
                      .++.++...+      ...++|+.+.+.+  +++.+.. .|.++ +|+.+.+.++ .+..++...+   +..+..|.+..
T Consensus       310 ~i~~I~~~aF------~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~  379 (401)
T 4fdw_A          310 SIRILGQGLL------GGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPA  379 (401)
T ss_dssp             TCCEECTTTT------TTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECG
T ss_pred             ceEEEhhhhh------cCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCH
Confidence            4677776554      5668899999964  5776654 56788 9999999987 6777776544   46888998875


Q ss_pred             C
Q 018478          333 C  333 (355)
Q Consensus       333 c  333 (355)
                      -
T Consensus       380 ~  380 (401)
T 4fdw_A          380 E  380 (401)
T ss_dssp             G
T ss_pred             H
Confidence            3

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.18  E-value=8.6e-11  Score=94.54  Aligned_cols=81  Identities=14%  Similarity=0.210  Sum_probs=43.7

Q ss_pred             CCCcccEEEEccCcchh--chhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcC-CCCCCCCCCCc
Q 018478           99 LPPSLKSLRVQGCSKLE--SIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLES-FPEGGLPCAKL  175 (355)
Q Consensus        99 ~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~-~~~~~~~~~~L  175 (355)
                      .+++|+.|++++|. +.  .+|..+..+++|++|++++|. +..+ ..+..+++|+.|++++| .+.. +|..+..+++|
T Consensus        22 ~~~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L   97 (168)
T 2ell_A           22 TPAAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSEN-RIFGGLDMLAEKLPNL   97 (168)
T ss_dssp             CTTSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESC-CCCSCCCHHHHHCTTC
T ss_pred             CcccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCC-cCchHHHHHHhhCCCC
Confidence            34566666666665 43  455555556666666666655 4444 44555566666666655 2333 33333335555


Q ss_pred             ceEEEccc
Q 018478          176 KEVVIRWC  183 (355)
Q Consensus       176 ~~L~l~~~  183 (355)
                      +.|++++|
T Consensus        98 ~~L~Ls~N  105 (168)
T 2ell_A           98 THLNLSGN  105 (168)
T ss_dssp             CEEECBSS
T ss_pred             CEEeccCC
Confidence            55555554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.16  E-value=2.6e-11  Score=95.58  Aligned_cols=57  Identities=18%  Similarity=0.321  Sum_probs=24.6

Q ss_pred             CcccEEEEccCcchhc-hhhhccCCCCCcEEEeeccCCcCccc--ccccCCCCCceEecccc
Q 018478          101 PSLKSLRVQGCSKLES-IAETLDNSTSLETIHIFYCENMKILP--SGLHNLRQLQEISIEGC  159 (355)
Q Consensus       101 ~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~  159 (355)
                      ++|+.|++++|. +.. +|..+..+++|++|++++|. ++.++  ..+..+++|+.|++++|
T Consensus        64 ~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N  123 (149)
T 2je0_A           64 NKLKKLELSDNR-VSGGLEVLAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNC  123 (149)
T ss_dssp             TTCCEEECCSSC-CCSCTHHHHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTC
T ss_pred             CCCCEEECCCCc-ccchHHHHhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCC
Confidence            444555554444 322 44433344444444444444 33222  33444444444444443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.16  E-value=3.4e-11  Score=119.13  Aligned_cols=81  Identities=17%  Similarity=0.139  Sum_probs=39.4

Q ss_pred             CcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEE
Q 018478          101 PSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVI  180 (355)
Q Consensus       101 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l  180 (355)
                      ++|+.|+|++|. +..+|..++.+++|++|++++|. +..+|..++.+++|+.|++++| .++.+|..+..+++|+.|++
T Consensus       247 ~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L  323 (727)
T 4b8c_D          247 DFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGV  323 (727)
T ss_dssp             CSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEEC
T ss_pred             CCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCC-CCCccChhhhcCCCccEEeC
Confidence            445555555544 33444444445555555555544 3344444455555555555544 34444444444555555555


Q ss_pred             cccc
Q 018478          181 RWCG  184 (355)
Q Consensus       181 ~~~~  184 (355)
                      ++|.
T Consensus       324 ~~N~  327 (727)
T 4b8c_D          324 EGNP  327 (727)
T ss_dssp             TTSC
T ss_pred             CCCc
Confidence            5543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.14  E-value=3.1e-11  Score=95.11  Aligned_cols=123  Identities=18%  Similarity=0.147  Sum_probs=84.5

Q ss_pred             cccccEEEecCCCccc--hhccccccchhccccccC-CCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCc
Q 018478           64 SYLLEELCISSCRSLT--SIFSKNELSATLESLEVG-NLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKI  140 (355)
Q Consensus        64 ~~~L~~L~l~~~~~l~--~~~~~n~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  140 (355)
                      .++|+.|+++++. ++  .+             +.. ..+++|+.|++++|. +..+ ..++.+++|++|++++|.....
T Consensus        16 ~~~l~~L~l~~n~-l~~~~~-------------~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~n~i~~~   79 (149)
T 2je0_A           16 PSDVKELVLDNSR-SNEGKL-------------EGLTDEFEELEFLSTINVG-LTSI-ANLPKLNKLKKLELSDNRVSGG   79 (149)
T ss_dssp             GGGCSEEECTTCB-CBTTBC-------------CSCCTTCTTCCEEECTTSC-CCCC-TTCCCCTTCCEEECCSSCCCSC
T ss_pred             CccCeEEEccCCc-CChhHH-------------HHHHhhcCCCcEEECcCCC-CCCc-hhhhcCCCCCEEECCCCcccch
Confidence            5677888887763 33  33             322 445788888888876 6655 5677788888888888774333


Q ss_pred             ccccccCCCCCceEeccccCCCcCCC--CCCCCCCCcceEEEccccCcCcccc----cccCCCCCceEEE
Q 018478          141 LPSGLHNLRQLQEISIEGCGNLESFP--EGGLPCAKLKEVVIRWCGRLEALPK----GLHNLKSLQKLTI  204 (355)
Q Consensus       141 ~~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~~~~~L~~L~l~~~~~~~~~p~----~l~~~~~L~~L~l  204 (355)
                      +|..+..+++|+.|++++| .++.++  ..+..+++|+.|++++|. ++..+.    .+..+++|+.|++
T Consensus        80 ~~~~~~~l~~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A           80 LEVLAEKCPNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             THHHHHHCTTCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETT
T ss_pred             HHHHhhhCCCCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccC
Confidence            6666667888888888887 455543  566677888888888864 444443    5677777777754

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.12  E-value=3.6e-11  Score=97.59  Aligned_cols=97  Identities=11%  Similarity=0.137  Sum_probs=54.1

Q ss_pred             CcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccc-cCCCCCceEeccccCCCcCCCC--CCCCCCCcce
Q 018478          101 PSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGL-HNLRQLQEISIEGCGNLESFPE--GGLPCAKLKE  177 (355)
Q Consensus       101 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~l~~~~~--~~~~~~~L~~  177 (355)
                      ++|+.|++++|. +..+ +.+..+++|++|++++|. +..+|..+ ..+++|+.|++++| .++.+|.  .+..+++|+.
T Consensus        42 ~~L~~L~Ls~N~-l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~  117 (176)
T 1a9n_A           42 DQFDAIDFSDNE-IRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLTELILTNN-SLVELGDLDPLASLKSLTY  117 (176)
T ss_dssp             TCCSEEECCSSC-CCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCE
T ss_pred             CCCCEEECCCCC-CCcc-cccccCCCCCEEECCCCc-ccccCcchhhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCE
Confidence            466666666665 5444 455666666666666665 44444333 56666666666665 4455554  4555666666


Q ss_pred             EEEccccCcCccccc----ccCCCCCceE
Q 018478          178 VVIRWCGRLEALPKG----LHNLKSLQKL  202 (355)
Q Consensus       178 L~l~~~~~~~~~p~~----l~~~~~L~~L  202 (355)
                      |++++|. +..+|..    +..+++|+.|
T Consensus       118 L~l~~N~-i~~~~~~~~~~~~~l~~L~~L  145 (176)
T 1a9n_A          118 LCILRNP-VTNKKHYRLYVIYKVPQVRVL  145 (176)
T ss_dssp             EECCSSG-GGGSTTHHHHHHHHCTTCSEE
T ss_pred             EEecCCC-CCCcHhHHHHHHHHCCcccee
Confidence            6666643 3333432    4444444443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.08  E-value=4.4e-10  Score=92.55  Aligned_cols=104  Identities=16%  Similarity=0.200  Sum_probs=68.2

Q ss_pred             CCcccEEEEccCcchhchhh--hccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCC-CCCCCCCCcc
Q 018478          100 PPSLKSLRVQGCSKLESIAE--TLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFP-EGGLPCAKLK  176 (355)
Q Consensus       100 ~~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~  176 (355)
                      +.+++.|++++|. +..+++  .+..+++|++|++++|......|..+..+++|+.|++++| .++.++ ..+..+++|+
T Consensus        28 ~~~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~  105 (192)
T 1w8a_A           28 PLHTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQLK  105 (192)
T ss_dssp             CTTCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSSTTCTTCC
T ss_pred             CCCCCEEECCCCc-CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC-cCCccCHHHhcCCCCCC
Confidence            3477888888776 665553  2667788888888877733334566777788888888776 444444 3466677788


Q ss_pred             eEEEccccCcCcccccccCCCCCceEEEe
Q 018478          177 EVVIRWCGRLEALPKGLHNLKSLQKLTIG  205 (355)
Q Consensus       177 ~L~l~~~~~~~~~p~~l~~~~~L~~L~l~  205 (355)
                      .|++++|......|..+..+++|++|+++
T Consensus       106 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  134 (192)
T 1w8a_A          106 TLNLYDNQISCVMPGSFEHLNSLTSLNLA  134 (192)
T ss_dssp             EEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred             EEECCCCcCCeeCHHHhhcCCCCCEEEeC
Confidence            88887765444445566666666665554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.07  E-value=9e-10  Score=90.73  Aligned_cols=103  Identities=19%  Similarity=0.333  Sum_probs=72.5

Q ss_pred             CCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCccc-ccccCCCCCceEeccccCCCcCCC-CCCCCCCCcc
Q 018478           99 LPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILP-SGLHNLRQLQEISIEGCGNLESFP-EGGLPCAKLK  176 (355)
Q Consensus        99 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~  176 (355)
                      .+++|+.|++++|. +..+|..+..+++|++|++++|. ++.++ ..+..+++|+.|++++| .++.++ ..+..+++|+
T Consensus        29 ~~~~l~~L~L~~n~-i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~  105 (193)
T 2wfh_A           29 IPRDVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRTFDGLKSLR  105 (193)
T ss_dssp             CCTTCCEEECCSSC-CCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCC
T ss_pred             CCCCCCEEECCCCc-CchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCCC-ccCEeCHHHhCCCCCCC
Confidence            44678888888877 67777777888888888888877 44443 56777888888888886 455554 4566778888


Q ss_pred             eEEEccccCcCcccc-cccCCCCCceEEEe
Q 018478          177 EVVIRWCGRLEALPK-GLHNLKSLQKLTIG  205 (355)
Q Consensus       177 ~L~l~~~~~~~~~p~-~l~~~~~L~~L~l~  205 (355)
                      .|++++|. ++.+|. .+..+++|+.|+++
T Consensus       106 ~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~  134 (193)
T 2wfh_A          106 LLSLHGND-ISVVPEGAFNDLSALSHLAIG  134 (193)
T ss_dssp             EEECCSSC-CCBCCTTTTTTCTTCCEEECC
T ss_pred             EEECCCCC-CCeeChhhhhcCccccEEEeC
Confidence            88888854 445543 45666666666554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.07  E-value=6e-10  Score=91.71  Aligned_cols=123  Identities=13%  Similarity=0.134  Sum_probs=85.0

Q ss_pred             ceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccccchhcccccc---CCCCCcccEEEE
Q 018478           32 KRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEV---GNLPPSLKSLRV  108 (355)
Q Consensus        32 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~---~~~~~~L~~L~l  108 (355)
                      +.+++++ +.++.+|...              ..++++|+++++ .++.+             +.   ...+++|++|++
T Consensus        11 ~~l~~s~-~~l~~ip~~~--------------~~~l~~L~l~~n-~i~~~-------------~~~~~~~~l~~L~~L~L   61 (192)
T 1w8a_A           11 TTVDCTG-RGLKEIPRDI--------------PLHTTELLLNDN-ELGRI-------------SSDGLFGRLPHLVKLEL   61 (192)
T ss_dssp             TEEECTT-SCCSSCCSCC--------------CTTCSEEECCSC-CCCSB-------------CCSCSGGGCTTCCEEEC
T ss_pred             CEEEcCC-CCcCcCccCC--------------CCCCCEEECCCC-cCCcc-------------CCccccccCCCCCEEEC
Confidence            5667776 4567777654              446777777764 34444             32   234568888888


Q ss_pred             ccCcchhch-hhhccCCCCCcEEEeeccCCcCcc-cccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEccccC
Q 018478          109 QGCSKLESI-AETLDNSTSLETIHIFYCENMKIL-PSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGR  185 (355)
Q Consensus       109 ~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~  185 (355)
                      ++|. +..+ |..+..+++|++|++++|. +..+ +..+..+++|+.|++++|..-...|..+..+++|+.|++++|..
T Consensus        62 s~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  138 (192)
T 1w8a_A           62 KRNQ-LTGIEPNAFEGASHIQELQLGENK-IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             CSSC-CCCBCTTTTTTCTTCCEEECCSCC-CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             CCCC-CCCcCHhHcCCcccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence            8887 5544 6677888888888888887 4444 44577888899999988743333466777788899999888654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.07  E-value=1.4e-10  Score=94.08  Aligned_cols=102  Identities=23%  Similarity=0.259  Sum_probs=74.4

Q ss_pred             CCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCC-CCCCCcce
Q 018478           99 LPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGG-LPCAKLKE  177 (355)
Q Consensus        99 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~  177 (355)
                      .+++|+.|++++|. +..++......++|++|++++|. ++.+ ..+..+++|+.|++++| .++.+|..+ ..+++|+.
T Consensus        17 ~~~~L~~L~l~~n~-l~~i~~~~~~~~~L~~L~Ls~N~-l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           17 NAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNE-IRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             CTTSCEEEECTTSC-CCSCCCGGGGTTCCSEEECCSSC-CCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCE
T ss_pred             CcCCceEEEeeCCC-CchhHHhhhcCCCCCEEECCCCC-CCcc-cccccCCCCCEEECCCC-cccccCcchhhcCCCCCE
Confidence            35688999999886 66665433334499999999887 6655 56788899999999887 567777554 66889999


Q ss_pred             EEEccccCcCcccc--cccCCCCCceEEEe
Q 018478          178 VVIRWCGRLEALPK--GLHNLKSLQKLTIG  205 (355)
Q Consensus       178 L~l~~~~~~~~~p~--~l~~~~~L~~L~l~  205 (355)
                      |++++| .++.+|.  .+..+++|+.|+++
T Consensus        93 L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~  121 (176)
T 1a9n_A           93 LILTNN-SLVELGDLDPLASLKSLTYLCIL  121 (176)
T ss_dssp             EECCSC-CCCCGGGGGGGGGCTTCCEEECC
T ss_pred             EECCCC-cCCcchhhHhhhcCCCCCEEEec
Confidence            999886 4566665  56667766666665

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.06  E-value=1.1e-09  Score=90.18  Aligned_cols=120  Identities=16%  Similarity=0.230  Sum_probs=89.8

Q ss_pred             ccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCC-CCCCCCCCcceEEEc
Q 018478          103 LKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFP-EGGLPCAKLKEVVIR  181 (355)
Q Consensus       103 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~  181 (355)
                      -+.++++++. +..+|..+  .++|++|++++|. ++.+|..+..+++|+.|++++| .++.++ ..+..+++|+.|+++
T Consensus        12 ~~~l~~~~~~-l~~ip~~~--~~~l~~L~L~~n~-i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls   86 (193)
T 2wfh_A           12 DTVVRCSNKG-LKVLPKGI--PRDVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILS   86 (193)
T ss_dssp             TTEEECTTSC-CSSCCSCC--CTTCCEEECCSSC-CCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEcCCCC-CCcCCCCC--CCCCCEEECCCCc-CchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECC
Confidence            4678888876 77888755  4799999999987 7788888999999999999997 566665 467889999999999


Q ss_pred             cccCcCcccccccCCCCCceEEEeecCcC---C--CCCCCCccEEEecCCc
Q 018478          182 WCGRLEALPKGLHNLKSLQKLTIGKGGLE---E--DGLPTNLHSLDIRGNM  227 (355)
Q Consensus       182 ~~~~~~~~p~~l~~~~~L~~L~l~~~~i~---~--~~~~~~L~~L~l~~~~  227 (355)
                      +|......+..+..+++|++|+++.+.+.   .  ...+++|+.|++++|.
T Consensus        87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A           87 YNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             SSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence            96543333457888888888888733333   2  2234566666666654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.01  E-value=2.1e-10  Score=113.42  Aligned_cols=104  Identities=20%  Similarity=0.197  Sum_probs=92.5

Q ss_pred             CCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcce
Q 018478           98 NLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKE  177 (355)
Q Consensus        98 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~  177 (355)
                      ..+++|+.|++++|. +..+|..+..+++|++|++++|. +..+|..++.+++|+.|++++| .++.+|..+..+++|+.
T Consensus       221 ~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~  297 (727)
T 4b8c_D          221 YDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSCFQLKY  297 (727)
T ss_dssp             -CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGGGTTCSE
T ss_pred             ccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCC-cCCccChhhcCCCCCCE
Confidence            445789999999988 77888888889999999999987 6689988999999999999998 57789999999999999


Q ss_pred             EEEccccCcCcccccccCCCCCceEEEe
Q 018478          178 VVIRWCGRLEALPKGLHNLKSLQKLTIG  205 (355)
Q Consensus       178 L~l~~~~~~~~~p~~l~~~~~L~~L~l~  205 (355)
                      |++++| .++.+|..++.+++|++|+++
T Consensus       298 L~L~~N-~l~~lp~~~~~l~~L~~L~L~  324 (727)
T 4b8c_D          298 FYFFDN-MVTTLPWEFGNLCNLQFLGVE  324 (727)
T ss_dssp             EECCSS-CCCCCCSSTTSCTTCCCEECT
T ss_pred             EECCCC-CCCccChhhhcCCCccEEeCC
Confidence            999996 567889899999999999998

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.99  E-value=3.8e-08  Score=90.35  Aligned_cols=251  Identities=9%  Similarity=0.092  Sum_probs=175.5

Q ss_pred             CCCccEEeecccccCcccccCccC-CCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhcc
Q 018478            5 NSSLEILEIWSCRSLTYLAAVQLP-RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFS   83 (355)
Q Consensus         5 ~~~L~~L~l~~~~~l~~l~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~   83 (355)
                      +..++++.+-  +.++.|+...|. .+|+++.+..  .++.++...           |.+ .+|+.+.+..  .++.+  
T Consensus       112 ~~~l~~i~ip--~~i~~I~~~aF~~~~L~~i~l~~--~i~~I~~~a-----------F~~-~~L~~i~lp~--~l~~I--  171 (401)
T 4fdw_A          112 LKGYNEIILP--NSVKSIPKDAFRNSQIAKVVLNE--GLKSIGDMA-----------FFN-STVQEIVFPS--TLEQL--  171 (401)
T ss_dssp             CSSCSEEECC--TTCCEECTTTTTTCCCSEEECCT--TCCEECTTT-----------TTT-CCCCEEECCT--TCCEE--
T ss_pred             cCCccEEEEC--CccCEehHhhcccCCccEEEeCC--CccEECHHh-----------cCC-CCceEEEeCC--CccEe--
Confidence            3567777775  467888877776 6789998875  377777654           555 3699999874  55555  


Q ss_pred             ccccchhccccccC--CCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCccc-ccccCCCCCceEeccccC
Q 018478           84 KNELSATLESLEVG--NLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILP-SGLHNLRQLQEISIEGCG  160 (355)
Q Consensus        84 ~n~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~  160 (355)
                                 ...  ..+++|+.+++..+. +..++.....+.+|+.+.+..+  +..++ ..|.++++|+.+.+..  
T Consensus       172 -----------~~~aF~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~--  235 (401)
T 4fdw_A          172 -----------KEDIFYYCYNLKKADLSKTK-ITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPE--  235 (401)
T ss_dssp             -----------CSSTTTTCTTCCEEECTTSC-CSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCT--
T ss_pred             -----------hHHHhhCcccCCeeecCCCc-ceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCC--
Confidence                       333  345789999998876 7777765555789999998743  55554 5677889999999986  


Q ss_pred             CCcCCCCCCCCCCCcceEEEccccCcCccc-ccccCCCCCceEEEeecC--------cCC--CCCCCCccEEEecCCcch
Q 018478          161 NLESFPEGGLPCAKLKEVVIRWCGRLEALP-KGLHNLKSLQKLTIGKGG--------LEE--DGLPTNLHSLDIRGNMEI  229 (355)
Q Consensus       161 ~l~~~~~~~~~~~~L~~L~l~~~~~~~~~p-~~l~~~~~L~~L~l~~~~--------i~~--~~~~~~L~~L~l~~~~~~  229 (355)
                      +++.++.....-.+|+.+.+..  .++.++ .+|..+++|+.+.+..+.        ++.  ...+++|+.+++.++  +
T Consensus       236 ~l~~I~~~aF~~~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i  311 (401)
T 4fdw_A          236 NVSTIGQEAFRESGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--I  311 (401)
T ss_dssp             TCCEECTTTTTTCCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--C
T ss_pred             CccCccccccccCCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc--e
Confidence            4666665444447899999964  355554 588899999999997322        443  335679999998753  4


Q ss_pred             hhhhhhhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccccc-cCCCCC-CccEEee
Q 018478          230 WKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSS-SIVDLQ-NLTSLYL  307 (355)
Q Consensus       230 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~-~L~~L~l  307 (355)
                      +.+... .  |.++++|+.+.+..   .++.++...+      ... +|+.+.+.+ +.+..++. .+.+++ ++..|.+
T Consensus       312 ~~I~~~-a--F~~c~~L~~l~lp~---~l~~I~~~aF------~~~-~L~~l~l~~-n~~~~l~~~~F~~~~~~l~~l~v  377 (401)
T 4fdw_A          312 RILGQG-L--LGGNRKVTQLTIPA---NVTQINFSAF------NNT-GIKEVKVEG-TTPPQVFEKVWYGFPDDITVIRV  377 (401)
T ss_dssp             CEECTT-T--TTTCCSCCEEEECT---TCCEECTTSS------SSS-CCCEEEECC-SSCCBCCCSSCCCSCTTCCEEEE
T ss_pred             EEEhhh-h--hcCCCCccEEEECc---cccEEcHHhC------CCC-CCCEEEEcC-CCCcccccccccCCCCCccEEEe
Confidence            333322 2  88999999999965   3667766553      455 899999998 45555543 345554 6777777


Q ss_pred             CC
Q 018478          308 VG  309 (355)
Q Consensus       308 ~~  309 (355)
                      ..
T Consensus       378 p~  379 (401)
T 4fdw_A          378 PA  379 (401)
T ss_dssp             CG
T ss_pred             CH
Confidence            54

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.98  E-value=2e-09  Score=96.37  Aligned_cols=181  Identities=14%  Similarity=0.150  Sum_probs=92.4

Q ss_pred             CCCCccEEeecccccCcccccCccC--CCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecC-------
Q 018478            4 TNSSLEILEIWSCRSLTYLAAVQLP--RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISS-------   74 (355)
Q Consensus         4 ~~~~L~~L~l~~~~~l~~l~~~~~~--~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-------   74 (355)
                      ++++|++|.+.+  .++.++...|.  ++|++|++.+ +.+..++...           |..+.++..+.+..       
T Consensus        99 g~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~-n~i~~i~~~a-----------F~~~~~l~~l~~~~~~~~~~~  164 (329)
T 3sb4_A           99 GKQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRK-KTAPNLLPEA-----------LADSVTAIFIPLGSSDAYRFK  164 (329)
T ss_dssp             ECTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCC-SSCCEECTTS-----------SCTTTCEEEECTTCTHHHHTS
T ss_pred             ccCCCcEEECCc--cccchhHHHhhcCcccceEEcCC-CCccccchhh-----------hcCCCceEEecCcchhhhhcc
Confidence            378889998875  78888877776  7899999987 5566665543           44444444444322       


Q ss_pred             ----------CCccchh--cc-ccccchhccccccCCCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcc
Q 018478           75 ----------CRSLTSI--FS-KNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKIL  141 (355)
Q Consensus        75 ----------~~~l~~~--~~-~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  141 (355)
                                |..++..  +. ...+.+.+.  .....+.+++.+.+.+.-....+......+++|+.+++.+|. +..+
T Consensus       165 ~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I  241 (329)
T 3sb4_A          165 NRWEHFAFIEGEPLETTIQVGAMGKLEDEIM--KAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN-ATTI  241 (329)
T ss_dssp             TTTTTSCEEESCCCEEEEEECTTCCHHHHHH--HTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC-CCEE
T ss_pred             ccccccccccccccceeEEecCCCcHHHHHh--hcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC-ccee
Confidence                      1111100  00 000000000  000112334444444332111111111225677777776655 5555


Q ss_pred             c-ccccCCCCCceEeccccCCCcCCC-CCCCCCCCcc-eEEEccccCcCccc-ccccCCCCCceEEEe
Q 018478          142 P-SGLHNLRQLQEISIEGCGNLESFP-EGGLPCAKLK-EVVIRWCGRLEALP-KGLHNLKSLQKLTIG  205 (355)
Q Consensus       142 ~-~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~-~L~l~~~~~~~~~p-~~l~~~~~L~~L~l~  205 (355)
                      + ..|.++++|+.+++.++  ++.++ ..|..|++|+ .+.+.+  .++.++ .+|.+|++|+.+++.
T Consensus       242 ~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~  305 (329)
T 3sb4_A          242 PDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLAT  305 (329)
T ss_dssp             CTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEEC
T ss_pred             cHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeC
Confidence            4 34666667777777653  55554 3455566676 776665  344443 466667777777764

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.92  E-value=9.5e-09  Score=83.19  Aligned_cols=101  Identities=24%  Similarity=0.344  Sum_probs=48.8

Q ss_pred             CcccEEEEccCcchhchhh-hccCCCCCcEEEeeccCCcCcccc-cccCCCCCceEeccccCCCcCCCC-CCCCCCCcce
Q 018478          101 PSLKSLRVQGCSKLESIAE-TLDNSTSLETIHIFYCENMKILPS-GLHNLRQLQEISIEGCGNLESFPE-GGLPCAKLKE  177 (355)
Q Consensus       101 ~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~  177 (355)
                      ++|+.|++++|. +..++. .+..+++|++|++++|. +..++. .+..+++|+.|++++| .++.+|. .+..+++|+.
T Consensus        28 ~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~  104 (177)
T 2o6r_A           28 SSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKE  104 (177)
T ss_dssp             TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred             CCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEECCCC-CccccCHHHhhCCcccCE
Confidence            455555555554 333332 23445555555555554 333332 2345555555555554 3444433 2344555555


Q ss_pred             EEEccccCcCcccc-cccCCCCCceEEEe
Q 018478          178 VVIRWCGRLEALPK-GLHNLKSLQKLTIG  205 (355)
Q Consensus       178 L~l~~~~~~~~~p~-~l~~~~~L~~L~l~  205 (355)
                      |++++| .++.+|. .+..+++|++|+++
T Consensus       105 L~l~~N-~l~~~~~~~~~~l~~L~~L~l~  132 (177)
T 2o6r_A          105 LALDTN-QLKSVPDGIFDRLTSLQKIWLH  132 (177)
T ss_dssp             EECCSS-CCSCCCTTTTTTCTTCCEEECC
T ss_pred             EECcCC-cceEeCHHHhcCCcccCEEEec
Confidence            555554 2333333 23455555555554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.92  E-value=1.1e-08  Score=82.72  Aligned_cols=122  Identities=20%  Similarity=0.248  Sum_probs=86.5

Q ss_pred             cccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCccc-ccccCCCCCceEeccccCCCcCCCC-CCCCCCCcceEE
Q 018478          102 SLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILP-SGLHNLRQLQEISIEGCGNLESFPE-GGLPCAKLKEVV  179 (355)
Q Consensus       102 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~  179 (355)
                      +.+.++++++. +..+|..+  .++|++|++++|. +..++ ..+..+++|+.|++++| .++.++. .+..+++|+.|+
T Consensus         8 ~~~~l~~~~~~-l~~~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~   82 (177)
T 2o6r_A            8 SGTEIRCNSKG-LTSVPTGI--PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILY   82 (177)
T ss_dssp             ETTEEECCSSC-CSSCCTTC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCEEEecCCC-CccCCCCC--CCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEE
Confidence            45677777766 66777544  4788999998877 55554 34677888999999887 5666664 356788899999


Q ss_pred             EccccCcCcccc-cccCCCCCceEEEeecC---cCC--CCCCCCccEEEecCCcch
Q 018478          180 IRWCGRLEALPK-GLHNLKSLQKLTIGKGG---LEE--DGLPTNLHSLDIRGNMEI  229 (355)
Q Consensus       180 l~~~~~~~~~p~-~l~~~~~L~~L~l~~~~---i~~--~~~~~~L~~L~l~~~~~~  229 (355)
                      +++|. ++.+|. .+..+++|++|+++.+.   ++.  ...+++|+.|++++|...
T Consensus        83 l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           83 LHENK-LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             CCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCCCC-ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence            98864 445543 56788899999888433   333  234678889999888643

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.90  E-value=1.9e-07  Score=85.54  Aligned_cols=204  Identities=16%  Similarity=0.148  Sum_probs=118.0

Q ss_pred             CcccEEEEccCcchhchh-hhccCCCCCcEEEeeccCCcCccc-ccccCCCCCceEeccccCCCcCCCCCCCCCCCcceE
Q 018478          101 PSLKSLRVQGCSKLESIA-ETLDNSTSLETIHIFYCENMKILP-SGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEV  178 (355)
Q Consensus       101 ~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L  178 (355)
                      .+|+.+.+..+  +..++ ..|..+.+|+.+.+..+  +..+. ..+.++..|+.+.+...  ...+........+|+.+
T Consensus       162 ~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~--~~~i~~~~~~~~~l~~i  235 (394)
T 4fs7_A          162 ESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNS--LYYLGDFALSKTGVKNI  235 (394)
T ss_dssp             TTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCCCCEE
T ss_pred             CCCcEEecCCc--cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCC--ceEeehhhcccCCCceE
Confidence            45566655432  22222 33445566666655432  23322 23445555655555432  22233334445567777


Q ss_pred             EEccccCcCccc-ccccCCCCCceEEEe--ecCcCC--CCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecc
Q 018478          179 VIRWCGRLEALP-KGLHNLKSLQKLTIG--KGGLEE--DGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEG  253 (355)
Q Consensus       179 ~l~~~~~~~~~p-~~l~~~~~L~~L~l~--~~~i~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  253 (355)
                      .+...  ++.+. .++..+..++.+.+.  ...+..  ......++.+...... +   + +..  +..+.+|+.+.+..
T Consensus       236 ~ip~~--~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~-i---~-~~~--F~~~~~L~~i~l~~  306 (394)
T 4fs7_A          236 IIPDS--FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI-V---P-EKT--FYGCSSLTEVKLLD  306 (394)
T ss_dssp             EECTT--CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE-E---C-TTT--TTTCTTCCEEEECT
T ss_pred             EECCC--ceecccccccccccceeEEcCCCcceeeccccccccccceeccCcee-e---c-ccc--cccccccccccccc
Confidence            66542  22232 355677777777775  222222  2234566666554432 1   1 112  67888899988865


Q ss_pred             cCCcccccCccccccCCCCCCCCccceEEeccCCCcccccc-cCCCCCCccEEeeCCCCCCcccCCCCC--CCCccEEEe
Q 018478          254 CDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSS-SIVDLQNLTSLYLVGCPKLKYFPEKGL--PSSLLELWI  330 (355)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~--~~~L~~L~l  330 (355)
                         .++.+++..+      ....+|+.+++.+  .++.+.. .+.++.+|+.+.+..  .++.++...+  +.+|+.+++
T Consensus       307 ---~i~~I~~~aF------~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~l  373 (394)
T 4fs7_A          307 ---SVKFIGEEAF------ESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVEL  373 (394)
T ss_dssp             ---TCCEECTTTT------TTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEE
T ss_pred             ---ccceechhhh------cCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEE
Confidence               3666665443      4567899998874  5676653 568899999999975  4888887766  789999998


Q ss_pred             cC
Q 018478          331 GG  332 (355)
Q Consensus       331 ~~  332 (355)
                      ..
T Consensus       374 p~  375 (394)
T 4fs7_A          374 PK  375 (394)
T ss_dssp             EG
T ss_pred             CC
Confidence            64

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.88  E-value=1.8e-11  Score=101.39  Aligned_cols=105  Identities=17%  Similarity=0.203  Sum_probs=62.3

Q ss_pred             cccccccEEEecCCCccchhccccccchhccccccCCCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcc
Q 018478           62 YTSYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKIL  141 (355)
Q Consensus        62 ~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  141 (355)
                      ..+++|++|+++++ .++.+             +....+++|+.|++++|. +..+|..+..+++|++|++++|. +..+
T Consensus        45 ~~l~~L~~L~ls~n-~l~~l-------------~~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~-l~~l  108 (198)
T 1ds9_A           45 STLKACKHLALSTN-NIEKI-------------SSLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQ-IASL  108 (198)
T ss_dssp             HHTTTCSEEECSEE-EESCC-------------CCHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEE-CCCH
T ss_pred             hcCCCCCEEECCCC-CCccc-------------cccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCc-CCcC
Confidence            44666777777654 34444             422333567777777765 55666555556677777777765 5555


Q ss_pred             cccccCCCCCceEeccccCCCcCCCC--CCCCCCCcceEEEcccc
Q 018478          142 PSGLHNLRQLQEISIEGCGNLESFPE--GGLPCAKLKEVVIRWCG  184 (355)
Q Consensus       142 ~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~~L~~L~l~~~~  184 (355)
                      | .+..+++|+.|++++| .+..++.  .+..+++|+.|++++|.
T Consensus       109 ~-~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~  151 (198)
T 1ds9_A          109 S-GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             H-HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred             C-ccccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCc
Confidence            4 4566667777777665 3444332  34456677777777654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.85  E-value=8.1e-11  Score=97.46  Aligned_cols=122  Identities=16%  Similarity=0.267  Sum_probs=83.9

Q ss_pred             cccEEEEccC-cchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEE
Q 018478          102 SLKSLRVQGC-SKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVI  180 (355)
Q Consensus       102 ~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l  180 (355)
                      .++...+.+. +.++.+|..+..+++|++|++++|. +..+| .+..+++|+.|++++| .+..+|..+..+++|+.|++
T Consensus        24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L  100 (198)
T 1ds9_A           24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWI  100 (198)
T ss_dssp             TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEE
T ss_pred             chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEEC
Confidence            4566666554 2355666677778888888888876 66676 6777888888888887 56677765555678888888


Q ss_pred             ccccCcCcccccccCCCCCceEEEeecCcCC------CCCCCCccEEEecCCcc
Q 018478          181 RWCGRLEALPKGLHNLKSLQKLTIGKGGLEE------DGLPTNLHSLDIRGNME  228 (355)
Q Consensus       181 ~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~------~~~~~~L~~L~l~~~~~  228 (355)
                      ++| .++.+| .+..+++|++|+++.+.+..      ...+++|+.|++++|..
T Consensus       101 ~~N-~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l  152 (198)
T 1ds9_A          101 SYN-QIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             EEE-ECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred             cCC-cCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence            886 455565 57777788888777433332      23456677777777653

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.74  E-value=3.9e-08  Score=79.05  Aligned_cols=96  Identities=22%  Similarity=0.387  Sum_probs=44.5

Q ss_pred             ccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcc-cccccCCCCCceEeccccCCCcCCCCC-CCCCCCcceEEE
Q 018478          103 LKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKIL-PSGLHNLRQLQEISIEGCGNLESFPEG-GLPCAKLKEVVI  180 (355)
Q Consensus       103 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l  180 (355)
                      .+.++++++. ++.+|..+  .++|++|++++|. +..+ +..+..+++|+.|++++| .++.+|.. +..+++|+.|++
T Consensus        11 ~~~l~~s~n~-l~~ip~~~--~~~l~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L   85 (170)
T 3g39_A           11 GTTVDCSGKS-LASVPTGI--PTTTQVLYLYDNQ-ITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSL   85 (170)
T ss_dssp             TTEEECTTSC-CSSCCSCC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCEEEeCCCC-cCccCccC--CCCCcEEEcCCCc-CCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEEC
Confidence            3455555544 44444433  2455555555554 3332 344555555555555554 34444432 344555555555


Q ss_pred             ccccCcCcccc-cccCCCCCceEEE
Q 018478          181 RWCGRLEALPK-GLHNLKSLQKLTI  204 (355)
Q Consensus       181 ~~~~~~~~~p~-~l~~~~~L~~L~l  204 (355)
                      ++|. ++.+|. .+..+++|++|++
T Consensus        86 ~~N~-l~~~~~~~~~~l~~L~~L~L  109 (170)
T 3g39_A           86 NDNQ-LKSIPRGAFDNLKSLTHIWL  109 (170)
T ss_dssp             CSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCc-cCEeCHHHhcCCCCCCEEEe
Confidence            5532 333332 3444444444444

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.73  E-value=4.1e-08  Score=79.24  Aligned_cols=79  Identities=16%  Similarity=0.316  Sum_probs=34.0

Q ss_pred             CcccEEEEccCcchhch-hhhccCCCCCcEEEeeccCCcCccccc-ccCCCCCceEeccccCCCcCCCCC-CCCCCCcce
Q 018478          101 PSLKSLRVQGCSKLESI-AETLDNSTSLETIHIFYCENMKILPSG-LHNLRQLQEISIEGCGNLESFPEG-GLPCAKLKE  177 (355)
Q Consensus       101 ~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~  177 (355)
                      ++|+.|++++|. +..+ |..+..+++|++|++++|. +..+|.. +..+++|+.|++++| .++.+|.. +..+++|+.
T Consensus        33 ~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~  109 (174)
T 2r9u_A           33 TDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDN-HLKSIPRGAFDNLKSLTH  109 (174)
T ss_dssp             TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCSE
T ss_pred             CCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCC-ccceeCHHHhccccCCCE
Confidence            444555555444 3332 3334444445555544443 3333322 234444444444443 33333332 333444444


Q ss_pred             EEEcc
Q 018478          178 VVIRW  182 (355)
Q Consensus       178 L~l~~  182 (355)
                      |++++
T Consensus       110 L~L~~  114 (174)
T 2r9u_A          110 IYLYN  114 (174)
T ss_dssp             EECCS
T ss_pred             EEeCC
Confidence            44444

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.66  E-value=3.2e-06  Score=77.40  Aligned_cols=102  Identities=14%  Similarity=0.213  Sum_probs=66.0

Q ss_pred             CCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccccc
Q 018478          215 PTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSS  294 (355)
Q Consensus       215 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~  294 (355)
                      +.+|+.+.+.+..  ..+. ...  +.++++|+.+.+..   .+..++...+      ....+|+.+.+.+  +++.+..
T Consensus       264 c~~L~~i~lp~~~--~~I~-~~a--F~~c~~L~~i~l~~---~i~~I~~~aF------~~c~~L~~i~lp~--~v~~I~~  327 (394)
T 4gt6_A          264 CAYLASVKMPDSV--VSIG-TGA--FMNCPALQDIEFSS---RITELPESVF------AGCISLKSIDIPE--GITQILD  327 (394)
T ss_dssp             CSSCCEEECCTTC--CEEC-TTT--TTTCTTCCEEECCT---TCCEECTTTT------TTCTTCCEEECCT--TCCEECT
T ss_pred             cccccEEeccccc--ceec-Ccc--cccccccccccCCC---cccccCceee------cCCCCcCEEEeCC--cccEehH
Confidence            3566666664432  1111 112  66777788777754   4556665443      4557888888874  4666643


Q ss_pred             -cCCCCCCccEEeeCCCCCCcccCCCCC--CCCccEEEecCCc
Q 018478          295 -SIVDLQNLTSLYLVGCPKLKYFPEKGL--PSSLLELWIGGCP  334 (355)
Q Consensus       295 -~~~~~~~L~~L~l~~~~~l~~~~~~~~--~~~L~~L~l~~c~  334 (355)
                       .|.+|.+|+.+.+.+  .++.++...+  +.+|+.+++.+..
T Consensus       328 ~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          328 DAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             TTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCH
T ss_pred             hHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCce
Confidence             567888999998864  4788877655  7889999887653

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.64  E-value=1.4e-07  Score=75.85  Aligned_cols=102  Identities=20%  Similarity=0.256  Sum_probs=81.1

Q ss_pred             cccEEEecCCCccchhccccccchhccccccCCCCCcccEEEEccCcchhch-hhhccCCCCCcEEEeeccCCcCcccc-
Q 018478           66 LLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESI-AETLDNSTSLETIHIFYCENMKILPS-  143 (355)
Q Consensus        66 ~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~-  143 (355)
                      ..+.+++++. .++.+             |.. .+++|+.|++++|. +..+ |..+..+++|++|++++|. ++.++. 
T Consensus        10 ~~~~l~~s~n-~l~~i-------------p~~-~~~~l~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~   72 (170)
T 3g39_A           10 SGTTVDCSGK-SLASV-------------PTG-IPTTTQVLYLYDNQ-ITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAG   72 (170)
T ss_dssp             ETTEEECTTS-CCSSC-------------CSC-CCTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC-CCCCCTT
T ss_pred             CCCEEEeCCC-CcCcc-------------Ccc-CCCCCcEEEcCCCc-CCccChhhhcCcccCCEEECCCCC-cCccChh
Confidence            3567777763 55666             543 35799999999998 6666 5678899999999999988 666664 


Q ss_pred             cccCCCCCceEeccccCCCcCCCC-CCCCCCCcceEEEccccC
Q 018478          144 GLHNLRQLQEISIEGCGNLESFPE-GGLPCAKLKEVVIRWCGR  185 (355)
Q Consensus       144 ~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~  185 (355)
                      .+..+++|+.|++++| .++.+|. .+..+++|+.|++++|..
T Consensus        73 ~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~  114 (170)
T 3g39_A           73 VFDKLTQLTQLSLNDN-QLKSIPRGAFDNLKSLTHIWLLNNPW  114 (170)
T ss_dssp             TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             hccCCCCCCEEECCCC-ccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence            4688999999999997 6777775 477899999999999753

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.63  E-value=1.5e-07  Score=75.92  Aligned_cols=102  Identities=20%  Similarity=0.306  Sum_probs=83.6

Q ss_pred             ccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcc-cccccCCCCCceEeccccCCCcCCCCC-CCCCCCcceEEE
Q 018478          103 LKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKIL-PSGLHNLRQLQEISIEGCGNLESFPEG-GLPCAKLKEVVI  180 (355)
Q Consensus       103 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l  180 (355)
                      -+.++++++. +..+|..+.  ++|++|++++|. +..+ |..+..+++|+.|++++| .++.+|.. +..+++|+.|++
T Consensus        14 ~~~l~~~~n~-l~~iP~~~~--~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L   88 (174)
T 2r9u_A           14 QTLVNCQNIR-LASVPAGIP--TDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDL   88 (174)
T ss_dssp             SSEEECCSSC-CSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred             CcEEEeCCCC-CCccCCCcC--CCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEEC
Confidence            4788998877 788887663  899999999988 5554 677889999999999997 77888765 467999999999


Q ss_pred             ccccCcCcccc-cccCCCCCceEEEeecCcC
Q 018478          181 RWCGRLEALPK-GLHNLKSLQKLTIGKGGLE  210 (355)
Q Consensus       181 ~~~~~~~~~p~-~l~~~~~L~~L~l~~~~i~  210 (355)
                      ++| .++.+|. .+..+++|++|+++.+.+.
T Consensus        89 ~~N-~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           89 NDN-HLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CSS-CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             CCC-ccceeCHHHhccccCCCEEEeCCCCcc
Confidence            996 4666665 4899999999999865554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.62  E-value=1.5e-06  Score=79.62  Aligned_cols=269  Identities=15%  Similarity=0.117  Sum_probs=167.3

Q ss_pred             CCCCccEEeecccccCcccccCccC--CCcceEecccCccccccccc--cCcCCCCC-----------------------
Q 018478            4 TNSSLEILEIWSCRSLTYLAAVQLP--RSLKRLDIQCCSNIRTLTME--EGIQSSSS-----------------------   56 (355)
Q Consensus         4 ~~~~L~~L~l~~~~~l~~l~~~~~~--~~L~~L~l~~~~~l~~~~~~--~~~~~~~~-----------------------   56 (355)
                      ++.+|+++.+.  ..++.|+...|.  ++|+.+++..  .++.++..  .+|..+..                       
T Consensus        69 ~c~~L~~i~lp--~~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~  144 (394)
T 4fs7_A           69 GCRKVTEIKIP--STVREIGEFAFENCSKLEIINIPD--SVKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEI  144 (394)
T ss_dssp             TCTTEEEEECC--TTCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEE
T ss_pred             CCCCceEEEeC--CCccCcchhHhhCCCCCcEEEeCC--CceEccchhhcccccchhhcccCceeeecceeeeccccccc
Confidence            46778888885  357788777775  6788888754  23433321  11111110                       


Q ss_pred             ---------CCccccccccccEEEecCCCccchhccccccchhccccccC--CCCCcccEEEEccCcchhchh-hhccCC
Q 018478           57 ---------SSSRRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEVG--NLPPSLKSLRVQGCSKLESIA-ETLDNS  124 (355)
Q Consensus        57 ---------~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~-~~~~~l  124 (355)
                               ...+|.++++|+.+.+..  .++.+             ...  ..+.+|+.+++..+  ++.+. ..+..+
T Consensus       145 ~~~~~~~~i~~~aF~~c~~L~~i~l~~--~~~~I-------------~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~  207 (394)
T 4fs7_A          145 TIPEGVTVIGDEAFATCESLEYVSLPD--SMETL-------------HNGLFSGCGKLKSIKLPRN--LKIIRDYCFAEC  207 (394)
T ss_dssp             ECCTTCCEECTTTTTTCTTCCEEECCT--TCCEE-------------CTTTTTTCTTCCBCCCCTT--CCEECTTTTTTC
T ss_pred             ccCccccccchhhhcccCCCcEEecCC--cccee-------------ccccccCCCCceEEEcCCC--ceEeCchhhccc
Confidence                     133455566666666643  22223             222  33467888888654  44443 456778


Q ss_pred             CCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCC-CCCCCCCCcceEEEccccCcCcccccccCCCCCceEE
Q 018478          125 TSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFP-EGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLT  203 (355)
Q Consensus       125 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~  203 (355)
                      ..|+.+.+..+.  ..+........+|+.+.+...  ...+. ..+..+.+++.+.+..+ ....-...+..+..++.+.
T Consensus       208 ~~L~~i~~~~~~--~~i~~~~~~~~~l~~i~ip~~--~~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~  282 (394)
T 4fs7_A          208 ILLENMEFPNSL--YYLGDFALSKTGVKNIIIPDS--FTELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVI  282 (394)
T ss_dssp             TTCCBCCCCTTC--CEECTTTTTTCCCCEEEECTT--CCEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEE
T ss_pred             cccceeecCCCc--eEeehhhcccCCCceEEECCC--ceecccccccccccceeEEcCCC-cceeeccccccccccceec
Confidence            889888776533  333334445678888888653  34443 35566889999988763 2233335778888888888


Q ss_pred             EeecCcCCC--CCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceE
Q 018478          204 IGKGGLEED--GLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSL  281 (355)
Q Consensus       204 l~~~~i~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L  281 (355)
                      .....++..  ..+.+|+.+.+.++  ++.+.. ..  |.++.+|+.+++..   .++.++...+      ....+|+.+
T Consensus       283 ~~~~~i~~~~F~~~~~L~~i~l~~~--i~~I~~-~a--F~~c~~L~~i~lp~---~v~~I~~~aF------~~c~~L~~i  348 (394)
T 4fs7_A          283 YGSVIVPEKTFYGCSSLTEVKLLDS--VKFIGE-EA--FESCTSLVSIDLPY---LVEEIGKRSF------RGCTSLSNI  348 (394)
T ss_dssp             ECSSEECTTTTTTCTTCCEEEECTT--CCEECT-TT--TTTCTTCCEECCCT---TCCEECTTTT------TTCTTCCEE
T ss_pred             cCceeeccccccccccccccccccc--cceech-hh--hcCCCCCCEEEeCC---cccEEhHHhc------cCCCCCCEE
Confidence            775445543  34578888888654  333322 22  88899999999975   3667766553      566789999


Q ss_pred             EeccCCCcccccc-cCCCCCCccEEeeCCCCCCccc
Q 018478          282 AIFSFPNLERLSS-SIVDLQNLTSLYLVGCPKLKYF  316 (355)
Q Consensus       282 ~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~~  316 (355)
                      .+..  +++.+.. .+.+|.+|+.+++...  ++.+
T Consensus       349 ~lp~--~l~~I~~~aF~~C~~L~~i~lp~~--~~~~  380 (394)
T 4fs7_A          349 NFPL--SLRKIGANAFQGCINLKKVELPKR--LEQY  380 (394)
T ss_dssp             CCCT--TCCEECTTTBTTCTTCCEEEEEGG--GGGG
T ss_pred             EECc--cccEehHHHhhCCCCCCEEEECCC--CEEh
Confidence            8875  4676654 5788999999998653  4444

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.51  E-value=7.1e-06  Score=75.08  Aligned_cols=122  Identities=13%  Similarity=0.129  Sum_probs=76.2

Q ss_pred             cccCCCCCceEEEe--ecCcCCC--CCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCccccc
Q 018478          192 GLHNLKSLQKLTIG--KGGLEED--GLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIR  267 (355)
Q Consensus       192 ~l~~~~~L~~L~l~--~~~i~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~  267 (355)
                      +|..+.+|+.+.+.  ...+...  ..+++|+.+.+...  ++.+.. ..  |.++.+|+.+.+..   .++.++...+ 
T Consensus       260 aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~--i~~I~~-~a--F~~c~~L~~i~lp~---~v~~I~~~aF-  330 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSR--ITELPE-SV--FAGCISLKSIDIPE---GITQILDDAF-  330 (394)
T ss_dssp             TTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECT-TT--TTTCTTCCEEECCT---TCCEECTTTT-
T ss_pred             eeeecccccEEecccccceecCcccccccccccccCCCc--ccccCc-ee--ecCCCCcCEEEeCC---cccEehHhHh-
Confidence            56677888888775  2233332  34578888888542  333332 23  88999999999975   4667766553 


Q ss_pred             cCCCCCCCCccceEEeccCCCcccccc-cCCCCCCccEEeeCCCCCCcccCCCCCCCCccEEEec
Q 018478          268 MGTTLPLPTSLTSLAIFSFPNLERLSS-SIVDLQNLTSLYLVGCPKLKYFPEKGLPSSLLELWIG  331 (355)
Q Consensus       268 ~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~  331 (355)
                           ....+|+.+.+.+  .++.+.. .|.+|.+|+.+++.++.  .....-..+.+|+.+.+.
T Consensus       331 -----~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~--~~~~~~~~~~~L~~i~i~  386 (394)
T 4gt6_A          331 -----AGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGSR--SQWNAISTDSGLQNLPVA  386 (394)
T ss_dssp             -----TTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCH--HHHHTCBCCCCC------
T ss_pred             -----hCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCce--eehhhhhccCCCCEEEeC
Confidence                 5667899999974  5676654 57899999999998752  222221225667766654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.33  E-value=6.5e-05  Score=68.16  Aligned_cols=13  Identities=8%  Similarity=0.289  Sum_probs=6.4

Q ss_pred             ccccccccEEEec
Q 018478           61 RYTSYLLEELCIS   73 (355)
Q Consensus        61 ~~~~~~L~~L~l~   73 (355)
                      |.++.+|+.+.+.
T Consensus        65 F~~C~~L~~I~lp   77 (379)
T 4h09_A           65 FNSCYNMTKVTVA   77 (379)
T ss_dssp             TTTCTTCCEEEEC
T ss_pred             hhCCCCCCEEEeC
Confidence            4445555555553

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.31  E-value=1.3e-06  Score=78.44  Aligned_cols=88  Identities=17%  Similarity=0.205  Sum_probs=63.7

Q ss_pred             ccCCCCCcccEEEEcc-Ccchhchh-hhccCCCCCcEEEeeccCCcCcc-cccccCCCCCceEeccccCCCcCCCCCCCC
Q 018478           95 EVGNLPPSLKSLRVQG-CSKLESIA-ETLDNSTSLETIHIFYCENMKIL-PSGLHNLRQLQEISIEGCGNLESFPEGGLP  171 (355)
Q Consensus        95 ~~~~~~~~L~~L~l~~-~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~  171 (355)
                      |....+.+|+.|+|++ |. +..++ ..|+.+++|++|++++|. +..+ +..+.++++|+.|++++| .+..+|.....
T Consensus        25 p~l~~~~~L~~L~l~~~n~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~  101 (347)
T 2ifg_A           25 HHLPGAENLTELYIENQQH-LQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTVQ  101 (347)
T ss_dssp             TTSCSCSCCSEEECCSCSS-CCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSS-CCSCCCSTTTC
T ss_pred             CCCCCCCCeeEEEccCCCC-CCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCC-ccceeCHHHcc
Confidence            5533446788999986 55 66665 567888899999998887 5544 456788888999999886 67777765544


Q ss_pred             CCCcceEEEccccC
Q 018478          172 CAKLKEVVIRWCGR  185 (355)
Q Consensus       172 ~~~L~~L~l~~~~~  185 (355)
                      ..+|+.|++.+|..
T Consensus       102 ~~~L~~l~l~~N~~  115 (347)
T 2ifg_A          102 GLSLQELVLSGNPL  115 (347)
T ss_dssp             SCCCCEEECCSSCC
T ss_pred             cCCceEEEeeCCCc
Confidence            33488888888653

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.31  E-value=0.00018  Score=65.25  Aligned_cols=134  Identities=13%  Similarity=0.141  Sum_probs=67.7

Q ss_pred             CCCCCCcceEEEccccCcCccc-ccccCCCCCceEEEe--ecCcCCC--CCCCCccEEEecCCcchhhhhhhhcccCCCC
Q 018478          169 GLPCAKLKEVVIRWCGRLEALP-KGLHNLKSLQKLTIG--KGGLEED--GLPTNLHSLDIRGNMEIWKSMIEWGQGFHRF  243 (355)
Q Consensus       169 ~~~~~~L~~L~l~~~~~~~~~p-~~l~~~~~L~~L~l~--~~~i~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l  243 (355)
                      +..+.+|+.+.+...  +..+. .++..+..|+.+.+.  ...+...  ....+|+.+.+...  ++.+.. ..  +.++
T Consensus       213 f~~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~-~a--F~~c  285 (379)
T 4h09_A          213 FSYGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAK--VKTVPY-LL--CSGC  285 (379)
T ss_dssp             TTTCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECCC--CSEECT-TT--TTTC
T ss_pred             cccccccceeeeccc--eeEEccccccCCccceEEEcCCCccEeCccccceeehhcccccccc--ceeccc-cc--cccc
Confidence            333456666655431  22222 345566666666664  2222222  23355666665432  222221 12  5666


Q ss_pred             CccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccccc-cCCCCCCccEEeeCCCCCCcccCCCCC
Q 018478          244 SSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSS-SIVDLQNLTSLYLVGCPKLKYFPEKGL  321 (355)
Q Consensus       244 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~  321 (355)
                      ++|+.+.+.+  ..++.+++..+      ....+|+.+.+.+  +++.+.. .|.++.+|+.+.+..  .++.++...+
T Consensus       286 ~~L~~i~l~~--~~i~~I~~~aF------~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~--~v~~I~~~aF  352 (379)
T 4h09_A          286 SNLTKVVMDN--SAIETLEPRVF------MDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPK--SITLIESGAF  352 (379)
T ss_dssp             TTCCEEEECC--TTCCEECTTTT------TTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCT--TCCEECTTTT
T ss_pred             cccccccccc--cccceehhhhh------cCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECC--ccCEEchhHh
Confidence            7777777765  44555555443      3445677766653  4555543 356666666666643  3555554433

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.30  E-value=2.7e-06  Score=76.41  Aligned_cols=58  Identities=17%  Similarity=0.256  Sum_probs=26.1

Q ss_pred             CCcccEEEEccCcchhchh-hhccCCCCCcEEEeeccCCcCcccccccCCCCCceEecccc
Q 018478          100 PPSLKSLRVQGCSKLESIA-ETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGC  159 (355)
Q Consensus       100 ~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  159 (355)
                      +++|+.|+|++|. +..++ ..|..+++|++|++++|. +..+|..+.....|+.|++.+|
T Consensus        55 l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~L~~l~l~~N  113 (347)
T 2ifg_A           55 LGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFNA-LESLSWKTVQGLSLQELVLSGN  113 (347)
T ss_dssp             CCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSSC-CSCCCSTTTCSCCCCEEECCSS
T ss_pred             ccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCCc-cceeCHHHcccCCceEEEeeCC
Confidence            3455555555554 33332 234455555555555544 3344332222222555555544

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.27  E-value=1.5e-06  Score=78.33  Aligned_cols=82  Identities=22%  Similarity=0.268  Sum_probs=44.1

Q ss_pred             ccCCCCCcEEEeeccCC----c-----CcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEccccCcCcccc
Q 018478          121 LDNSTSLETIHIFYCEN----M-----KILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEALPK  191 (355)
Q Consensus       121 ~~~l~~L~~L~l~~~~~----~-----~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~p~  191 (355)
                      +.++++|+.|.+.....    +     ..+...+..+|+|+.|.+.++..+ .++. + .+++|++|++..|........
T Consensus       135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~  211 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVE  211 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHH
T ss_pred             hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHH
Confidence            34466777777654321    0     123334455677888888765323 2333 2 256788888876542211112


Q ss_pred             cc--cCCCCCceEEEe
Q 018478          192 GL--HNLKSLQKLTIG  205 (355)
Q Consensus       192 ~l--~~~~~L~~L~l~  205 (355)
                      .+  ..+++|+.|.++
T Consensus       212 ~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          212 DILGSDLPNLEKLVLY  227 (362)
T ss_dssp             HHHHSBCTTCCEEEEE
T ss_pred             HHHHccCCCCcEEEEe
Confidence            23  256777777764

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.21  E-value=1.7e-06  Score=69.21  Aligned_cols=92  Identities=13%  Similarity=0.188  Sum_probs=47.7

Q ss_pred             CCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccccchhccccccC-CCCCcccEEE
Q 018478           29 RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEVG-NLPPSLKSLR  107 (355)
Q Consensus        29 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~-~~~~~L~~L~  107 (355)
                      ..|++|++++|. +.......           +..+++|++|++++|..+++.    .+...    ... ...++|+.|+
T Consensus        61 ~~L~~LDLs~~~-Itd~GL~~-----------L~~~~~L~~L~L~~C~~ItD~----gL~~L----~~~~~~~~~L~~L~  120 (176)
T 3e4g_A           61 YKIQAIDATDSC-IMSIGFDH-----------MEGLQYVEKIRLCKCHYIEDG----CLERL----SQLENLQKSMLEME  120 (176)
T ss_dssp             CCEEEEEEESCC-CCGGGGGG-----------GTTCSCCCEEEEESCTTCCHH----HHHHH----HTCHHHHHHCCEEE
T ss_pred             ceEeEEeCcCCC-ccHHHHHH-----------hcCCCCCCEEEeCCCCccCHH----HHHHH----HhcccccCCCCEEE
Confidence            356777777765 43322211           234667777777777665554    00000    000 0123577777


Q ss_pred             EccCcchhch-hhhccCCCCCcEEEeeccCCcCc
Q 018478          108 VQGCSKLESI-AETLDNSTSLETIHIFYCENMKI  140 (355)
Q Consensus       108 l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~  140 (355)
                      +++|..++.- -..+..+++|++|++++|+.++.
T Consensus       121 Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          121 IISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             EESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred             cCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence            7777655431 12344567777777777665554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.19  E-value=9.1e-07  Score=70.73  Aligned_cols=90  Identities=16%  Similarity=0.196  Sum_probs=56.1

Q ss_pred             CCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCccccccCCCCCC----CCccceEEeccCCCccc
Q 018478          216 TNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPL----PTSLTSLAIFSFPNLER  291 (355)
Q Consensus       216 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~l~~  291 (355)
                      .+|+.||+++|. +++.-..   .+.++++|++|++++ |..+++-.-...      ..    .++|++|++++|.+++.
T Consensus        61 ~~L~~LDLs~~~-Itd~GL~---~L~~~~~L~~L~L~~-C~~ItD~gL~~L------~~~~~~~~~L~~L~Ls~C~~ITD  129 (176)
T 3e4g_A           61 YKIQAIDATDSC-IMSIGFD---HMEGLQYVEKIRLCK-CHYIEDGCLERL------SQLENLQKSMLEMEIISCGNVTD  129 (176)
T ss_dssp             CCEEEEEEESCC-CCGGGGG---GGTTCSCCCEEEEES-CTTCCHHHHHHH------HTCHHHHHHCCEEEEESCTTCCH
T ss_pred             ceEeEEeCcCCC-ccHHHHH---HhcCCCCCCEEEeCC-CCccCHHHHHHH------HhcccccCCCCEEEcCCCCcCCH
Confidence            367888888887 3332211   166888888888888 776654322110      11    13688888888877663


Q ss_pred             cc-ccCCCCCCccEEeeCCCCCCccc
Q 018478          292 LS-SSIVDLQNLTSLYLVGCPKLKYF  316 (355)
Q Consensus       292 l~-~~~~~~~~L~~L~l~~~~~l~~~  316 (355)
                      -. ..+..+++|++|++++|++++..
T Consensus       130 ~Gl~~L~~~~~L~~L~L~~c~~Itd~  155 (176)
T 3e4g_A          130 KGIIALHHFRNLKYLFLSDLPGVKEK  155 (176)
T ss_dssp             HHHHHGGGCTTCCEEEEESCTTCCCH
T ss_pred             HHHHHHhcCCCCCEEECCCCCCCCch
Confidence            21 12355778888888888777653

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.16  E-value=8.5e-08  Score=87.13  Aligned_cols=58  Identities=17%  Similarity=0.323  Sum_probs=25.2

Q ss_pred             CcccEEEEccCcchhc-----hhhhcc-CCCCCcEEEeeccCCcCc-ccccccCCCCCceEecccc
Q 018478          101 PSLKSLRVQGCSKLES-----IAETLD-NSTSLETIHIFYCENMKI-LPSGLHNLRQLQEISIEGC  159 (355)
Q Consensus       101 ~~L~~L~l~~~~~~~~-----~~~~~~-~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~  159 (355)
                      ++|+.|++++|. +..     +...+. ..++|++|++++|..-.. .......+++|+.|++++|
T Consensus        72 ~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n  136 (372)
T 3un9_A           72 SSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN  136 (372)
T ss_dssp             TTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS
T ss_pred             hhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC
Confidence            355666666655 321     222222 124666666666552111 1111112345566666555

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.10  E-value=2e-07  Score=84.74  Aligned_cols=158  Identities=15%  Similarity=0.074  Sum_probs=101.7

Q ss_pred             CCCCceEeccccCCCcC-----CCCCCC-CCCCcceEEEccccCcCcccccc-cCCCCCceEEEeecCcCCC--------
Q 018478          148 LRQLQEISIEGCGNLES-----FPEGGL-PCAKLKEVVIRWCGRLEALPKGL-HNLKSLQKLTIGKGGLEED--------  212 (355)
Q Consensus       148 l~~L~~L~l~~~~~l~~-----~~~~~~-~~~~L~~L~l~~~~~~~~~p~~l-~~~~~L~~L~l~~~~i~~~--------  212 (355)
                      +++|+.|++++|. ++.     +...+. ..++|++|++++|.....-...+ ..+++|++|+++.+.+.+.        
T Consensus        71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~  149 (372)
T 3un9_A           71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL  149 (372)
T ss_dssp             HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred             HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence            4679999999974 432     111111 23689999999975322111222 3467899999986666432        


Q ss_pred             --CCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCccccc-----CccccccCCCCCCCCccceEEecc
Q 018478          213 --GLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSF-----PPEDIRMGTTLPLPTSLTSLAIFS  285 (355)
Q Consensus       213 --~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~L~~L~l~~  285 (355)
                        ...++|+.|++++|.........+...+...++|++|++++  +.++..     ...+       ...++|++|++++
T Consensus       150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~--N~l~~~g~~~L~~~L-------~~~~~L~~L~Ls~  220 (372)
T 3un9_A          150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLH--TGLGDEGLELLAAQL-------DRNRQLQELNVAY  220 (372)
T ss_dssp             HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTT--SSCHHHHHHHHHHHG-------GGCSCCCEEECCS
T ss_pred             HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCC--CCCCcHHHHHHHHHH-------hcCCCcCeEECCC
Confidence              23478999999999754433322222256788999999998  344432     2222       3456899999999


Q ss_pred             CCCccc-----ccccCCCCCCccEEeeCCCCCCcccC
Q 018478          286 FPNLER-----LSSSIVDLQNLTSLYLVGCPKLKYFP  317 (355)
Q Consensus       286 ~~~l~~-----l~~~~~~~~~L~~L~l~~~~~l~~~~  317 (355)
                      | .++.     ++..+...++|++|++++| .++..+
T Consensus       221 N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N-~i~~~g  255 (372)
T 3un9_A          221 N-GAGDTAALALARAAREHPSLELLHLYFN-ELSSEG  255 (372)
T ss_dssp             S-CCCHHHHHHHHHHHHHCSSCCEEECTTS-SCCHHH
T ss_pred             C-CCCHHHHHHHHHHHHhCCCCCEEeccCC-CCCHHH
Confidence            4 5553     3333456789999999998 576543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.10  E-value=2.2e-06  Score=77.34  Aligned_cols=60  Identities=20%  Similarity=0.197  Sum_probs=28.8

Q ss_pred             hhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCC-CCCC--CCCCCcceEEEc
Q 018478          118 AETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESF-PEGG--LPCAKLKEVVIR  181 (355)
Q Consensus       118 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~--~~~~~L~~L~l~  181 (355)
                      ...+..+|+|+.|.+.+|..+ .++. + .+++|+.|++..|. +..- ...+  ..+++|+.|++.
T Consensus       165 ~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~-l~~~~l~~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          165 SPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGG-LPDSVVEDILGSDLPNLEKLVLY  227 (362)
T ss_dssp             HHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSB-CCHHHHHHHHHSBCTTCCEEEEE
T ss_pred             HHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCC-CChHHHHHHHHccCCCCcEEEEe
Confidence            344445666777766655322 2222 2 25667777666542 2110 0111  135567777664

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.06  E-value=0.00015  Score=58.80  Aligned_cols=35  Identities=20%  Similarity=0.359  Sum_probs=16.4

Q ss_pred             CcccEEEEccC-cchh-----chhhhccCCCCCcEEEeeccC
Q 018478          101 PSLKSLRVQGC-SKLE-----SIAETLDNSTSLETIHIFYCE  136 (355)
Q Consensus       101 ~~L~~L~l~~~-~~~~-----~~~~~~~~l~~L~~L~l~~~~  136 (355)
                      ++|+.|++++| . +.     .+...+...++|++|++++|.
T Consensus        36 ~~L~~L~L~~n~~-i~~~g~~~l~~~L~~~~~L~~L~Ls~n~   76 (185)
T 1io0_A           36 PDLEEVNLNNIMN-IPVPTLKACAEALKTNTYVKKFSIVGTR   76 (185)
T ss_dssp             TTCCEEECTTCTT-CCHHHHHHHHHHHTTCCSCCEEECTTSC
T ss_pred             CCCCEEEecCCCC-CCHHHHHHHHHHHHhCCCcCEEECcCCC
Confidence            44555555554 2 21     123334444555555555554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.04  E-value=0.00021  Score=57.87  Aligned_cols=108  Identities=13%  Similarity=0.102  Sum_probs=57.1

Q ss_pred             CCccEEEecCC-cchhhhhhhhcccCCCCCccceeEecccCCcccc-----cCccccccCCCCCCCCccceEEeccCCCc
Q 018478          216 TNLHSLDIRGN-MEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVS-----FPPEDIRMGTTLPLPTSLTSLAIFSFPNL  289 (355)
Q Consensus       216 ~~L~~L~l~~~-~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  289 (355)
                      ++|++|++++| .............+...++|++|++++ | .+..     +....       ...++|++|++++| .+
T Consensus        36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~-n-~i~~~g~~~l~~~L-------~~n~~L~~L~L~~N-~i  105 (185)
T 1io0_A           36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVG-T-RSNDPVAFALAEML-------KVNNTLKSLNVESN-FI  105 (185)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTT-S-CCCHHHHHHHHHHH-------HHCSSCCEEECCSS-CC
T ss_pred             CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcC-C-CCChHHHHHHHHHH-------HhCCCcCEEECcCC-cC
Confidence            45555666666 332222221112245566777777776 2 2322     11111       23356777777773 44


Q ss_pred             cc-----ccccCCCCCCccEEee--CCCCCCcccCCCCC------CCCccEEEecCCc
Q 018478          290 ER-----LSSSIVDLQNLTSLYL--VGCPKLKYFPEKGL------PSSLLELWIGGCP  334 (355)
Q Consensus       290 ~~-----l~~~~~~~~~L~~L~l--~~~~~l~~~~~~~~------~~~L~~L~l~~c~  334 (355)
                      ..     +...+...+.|++|++  ++| .+..-....+      .++|++|++.+|.
T Consensus       106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          106 SGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             CHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             CHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence            42     3444566677888888  555 5554321111      4778888888775

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.87  E-value=0.00052  Score=58.77  Aligned_cols=79  Identities=15%  Similarity=0.133  Sum_probs=50.7

Q ss_pred             cCCCCCcEEEeeccCCcCc---ccccccCCCCCceEeccccCCCcCCCCCCCCCC--CcceEEEccccCcCcccc-----
Q 018478          122 DNSTSLETIHIFYCENMKI---LPSGLHNLRQLQEISIEGCGNLESFPEGGLPCA--KLKEVVIRWCGRLEALPK-----  191 (355)
Q Consensus       122 ~~l~~L~~L~l~~~~~~~~---~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~--~L~~L~l~~~~~~~~~p~-----  191 (355)
                      ..+++|+.|++++|. +..   ++..+..+++|+.|++++| .+..+. .+..+.  +|++|++++|+....+|.     
T Consensus       167 ~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~  243 (267)
T 3rw6_A          167 ENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGN-ELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYI  243 (267)
T ss_dssp             HHCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTS-CCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred             hhCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCC-ccCCch-hhhhcccCCcceEEccCCcCccccCcchhHH
Confidence            347888888888877 443   3455567888888888886 455442 122223  788888888765443331     


Q ss_pred             --cccCCCCCceEE
Q 018478          192 --GLHNLKSLQKLT  203 (355)
Q Consensus       192 --~l~~~~~L~~L~  203 (355)
                        .+..+++|+.|+
T Consensus       244 ~~il~~~P~L~~LD  257 (267)
T 3rw6_A          244 SAIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHHCTTCCEES
T ss_pred             HHHHHHCcccCeEC
Confidence              356677777664

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.63  E-value=0.00067  Score=58.12  Aligned_cols=78  Identities=19%  Similarity=0.269  Sum_probs=54.8

Q ss_pred             CCCcccEEEEccCcchhc---hhhhccCCCCCcEEEeeccCCcCcccccccCCC--CCceEeccccCCCcCCCC------
Q 018478           99 LPPSLKSLRVQGCSKLES---IAETLDNSTSLETIHIFYCENMKILPSGLHNLR--QLQEISIEGCGNLESFPE------  167 (355)
Q Consensus        99 ~~~~L~~L~l~~~~~~~~---~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~--~L~~L~l~~~~~l~~~~~------  167 (355)
                      .+++|+.|++++|. +..   +|..+..+++|+.|++++|. +..+ ..+..+.  +|+.|++.+|+-...+|.      
T Consensus       168 ~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          168 NIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNE-LKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSC-CCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCc-cCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            35789999999997 554   44556679999999999988 5544 2334444  899999999864444442      


Q ss_pred             -CCCCCCCcceEE
Q 018478          168 -GGLPCAKLKEVV  179 (355)
Q Consensus       168 -~~~~~~~L~~L~  179 (355)
                       .+..+++|+.|+
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence             233467888775

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=94.80  E-value=0.023  Score=42.72  Aligned_cols=37  Identities=27%  Similarity=0.362  Sum_probs=21.8

Q ss_pred             CCCccceEEeccCCCccccccc-CCCCCCccEEeeCCCC
Q 018478          274 LPTSLTSLAIFSFPNLERLSSS-IVDLQNLTSLYLVGCP  311 (355)
Q Consensus       274 ~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~~~~  311 (355)
                      .+++|++|++++ +.++.++.. +..+++|++|++.+|+
T Consensus        29 lp~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           29 FPVDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             CCTTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             CCcCCCEEECCC-CcCCccChhhhhhccccCEEEecCCC
Confidence            345666666666 566666543 3556666666666653

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=94.27  E-value=0.067  Score=40.12  Aligned_cols=33  Identities=18%  Similarity=0.369  Sum_probs=16.2

Q ss_pred             ccceeEecccCCcccccCccccccCCCCCCCCccceEEecc
Q 018478          245 SLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFS  285 (355)
Q Consensus       245 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  285 (355)
                      +|++|++++  +.++.++.+.+      ..+++|+.|++.+
T Consensus        32 ~l~~L~Ls~--N~l~~l~~~~f------~~l~~L~~L~L~~   64 (130)
T 3rfe_A           32 DTTELVLTG--NNLTALPPGLL------DALPALRTAHLGA   64 (130)
T ss_dssp             TCSEEECTT--SCCSSCCTTTG------GGCTTCCEEECCS
T ss_pred             CCCEEECCC--CcCCccChhhh------hhccccCEEEecC
Confidence            455555554  44555554332      2344555555554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=91.08  E-value=0.1  Score=42.23  Aligned_cols=59  Identities=17%  Similarity=0.208  Sum_probs=28.7

Q ss_pred             CcccEEEEccCcchh-----chhhhccCCCCCcEEEeeccCCcC----cccccccCCCCCceEecccc
Q 018478          101 PSLKSLRVQGCSKLE-----SIAETLDNSTSLETIHIFYCENMK----ILPSGLHNLRQLQEISIEGC  159 (355)
Q Consensus       101 ~~L~~L~l~~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~  159 (355)
                      +.|+.|+++++..+.     .+...+..-..|+.|++++|..-+    .+...+..-+.|+.|++++|
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N  108 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN  108 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred             CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC
Confidence            356666665541122     233444445566666666655221    12333334455666666655

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=87.15  E-value=0.38  Score=38.82  Aligned_cols=11  Identities=27%  Similarity=0.459  Sum_probs=6.0

Q ss_pred             CCCCceEeccc
Q 018478          148 LRQLQEISIEG  158 (355)
Q Consensus       148 l~~L~~L~l~~  158 (355)
                      -+.|+.|++++
T Consensus        40 n~~L~~L~L~~   50 (197)
T 1pgv_A           40 DTDLKEVNINN   50 (197)
T ss_dssp             CSSCCEEECTT
T ss_pred             CCCccEEECCC
Confidence            44556666654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	355
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.82
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.79
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.77
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.74
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.72
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.7
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.7
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.69
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.68
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.64
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.63
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.58
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.54
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.54
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.53
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.52
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.48
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.46
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.46
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.45
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.44
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.44
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.12
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.11
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.04
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.01
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.98
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.92
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.89
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.78
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.69
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.64
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.57
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.57
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.39
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.37
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.35
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.44
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.35
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.12
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.28
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.72

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.82  E-value=8.2e-19  Score=158.65  Aligned_cols=185  Identities=18%  Similarity=0.188  Sum_probs=100.4

Q ss_pred             CCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEccccCcCcccccccCCCCCceEE
Q 018478          124 STSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLT  203 (355)
Q Consensus       124 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~  203 (355)
                      +++++.+.+++|. ++.++. ...+++|+.|++++| .++.++ .+..+++|+.+++.+|. ++.++ .+..+++|++|+
T Consensus       196 l~~~~~l~l~~n~-i~~~~~-~~~~~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~-l~~~~-~~~~~~~L~~L~  269 (384)
T d2omza2         196 LTNLESLIATNNQ-ISDITP-LGILTNLDELSLNGN-QLKDIG-TLASLTNLTDLDLANNQ-ISNLA-PLSGLTKLTELK  269 (384)
T ss_dssp             CTTCSEEECCSSC-CCCCGG-GGGCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSC-CCCCG-GGTTCTTCSEEE
T ss_pred             ccccceeeccCCc-cCCCCc-ccccCCCCEEECCCC-CCCCcc-hhhcccccchhccccCc-cCCCC-cccccccCCEee
Confidence            4455555555544 333321 233455556666554 333332 23344556666665543 33332 355555666666


Q ss_pred             Eeec---CcCCCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccce
Q 018478          204 IGKG---GLEEDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTS  280 (355)
Q Consensus       204 l~~~---~i~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  280 (355)
                      ++..   .++.....+.++.+++.+|... ....     +..++++++|++++  +.++.+++ +       ..+++|++
T Consensus       270 l~~~~l~~~~~~~~~~~l~~l~~~~n~l~-~~~~-----~~~~~~l~~L~ls~--n~l~~l~~-l-------~~l~~L~~  333 (384)
T d2omza2         270 LGANQISNISPLAGLTALTNLELNENQLE-DISP-----ISNLKNLTYLTLYF--NNISDISP-V-------SSLTKLQR  333 (384)
T ss_dssp             CCSSCCCCCGGGTTCTTCSEEECCSSCCS-CCGG-----GGGCTTCSEEECCS--SCCSCCGG-G-------GGCTTCCE
T ss_pred             ccCcccCCCCccccccccccccccccccc-cccc-----cchhcccCeEECCC--CCCCCCcc-c-------ccCCCCCE
Confidence            5522   2222334455555555554422 1111     45566777777776  35555543 2       35567777


Q ss_pred             EEeccCCCcccccccCCCCCCccEEeeCCCCCCcccCCCCCCCCccEEEecCC
Q 018478          281 LAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPEKGLPSSLLELWIGGC  333 (355)
Q Consensus       281 L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c  333 (355)
                      |++++| .++.++ .+..+++|++|++++| +++.+++-.-+++|++|+++++
T Consensus       334 L~L~~n-~l~~l~-~l~~l~~L~~L~l~~N-~l~~l~~l~~l~~L~~L~L~~N  383 (384)
T d2omza2         334 LFFANN-KVSDVS-SLANLTNINWLSAGHN-QISDLTPLANLTRITQLGLNDQ  383 (384)
T ss_dssp             EECCSS-CCCCCG-GGGGCTTCCEEECCSS-CCCBCGGGTTCTTCSEEECCCE
T ss_pred             EECCCC-CCCCCh-hHcCCCCCCEEECCCC-cCCCChhhccCCCCCEeeCCCC
Confidence            887774 666665 3667777888888776 6777654333577777777653

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.79  E-value=4.6e-18  Score=149.15  Aligned_cols=259  Identities=15%  Similarity=0.189  Sum_probs=158.0

Q ss_pred             cEEeecccccCcccccCccCCCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccccc
Q 018478            9 EILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELS   88 (355)
Q Consensus         9 ~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~   88 (355)
                      +.++..+ .+++++|. .+++++++|++++ +.++.++...           |..+++|++|+++++... .+       
T Consensus        13 ~~~~C~~-~~L~~lP~-~l~~~l~~L~Ls~-N~i~~l~~~~-----------f~~l~~L~~L~l~~n~~~-~i-------   70 (305)
T d1xkua_          13 RVVQCSD-LGLEKVPK-DLPPDTALLDLQN-NKITEIKDGD-----------FKNLKNLHTLILINNKIS-KI-------   70 (305)
T ss_dssp             TEEECTT-SCCCSCCC-SCCTTCCEEECCS-SCCCCBCTTT-----------TTTCTTCCEEECCSSCCC-CB-------
T ss_pred             CEEEecC-CCCCccCC-CCCCCCCEEECcC-CcCCCcChhH-----------hhcccccccccccccccc-cc-------
Confidence            4444432 34666664 4567777777777 4566666532           344667777777665432 22       


Q ss_pred             hhcccccc--CCCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCccc-ccccCCCCCceEeccccCCCc--
Q 018478           89 ATLESLEV--GNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILP-SGLHNLRQLQEISIEGCGNLE--  163 (355)
Q Consensus        89 ~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~--  163 (355)
                            +.  ...+++|+.|++++|. ++.+|..+  ...++.|....+. +..++ ..+.....+..++...+....  
T Consensus        71 ------~~~~f~~l~~L~~L~l~~n~-l~~l~~~~--~~~l~~L~~~~n~-l~~l~~~~~~~~~~~~~l~~~~n~~~~~~  140 (305)
T d1xkua_          71 ------SPGAFAPLVKLERLYLSKNQ-LKELPEKM--PKTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSG  140 (305)
T ss_dssp             ------CTTTTTTCTTCCEEECCSSC-CSBCCSSC--CTTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGG
T ss_pred             ------chhhhhCCCccCEecccCCc-cCcCccch--hhhhhhhhccccc-hhhhhhhhhhccccccccccccccccccC
Confidence                  21  1334566777776665 55555433  3566666666655 33332 223334445555554432111  


Q ss_pred             CCCCCCCCCCCcceEEEccccCcCcccccccCCCCCceEEEeecCcCCCCCCCCccEEEecCCcchhhhhhhhcccCCCC
Q 018478          164 SFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEEDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRF  243 (355)
Q Consensus       164 ~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l  243 (355)
                      ..+..+..+++|+.+++.+|. +..+|                     ...+++|+.|++.+|......+.  .  +.++
T Consensus       141 ~~~~~~~~l~~L~~l~l~~n~-l~~l~---------------------~~~~~~L~~L~l~~n~~~~~~~~--~--~~~~  194 (305)
T d1xkua_         141 IENGAFQGMKKLSYIRIADTN-ITTIP---------------------QGLPPSLTELHLDGNKITKVDAA--S--LKGL  194 (305)
T ss_dssp             BCTTGGGGCTTCCEEECCSSC-CCSCC---------------------SSCCTTCSEEECTTSCCCEECTG--G--GTTC
T ss_pred             CCccccccccccCccccccCC-ccccC---------------------cccCCccCEEECCCCcCCCCChh--H--hhcc
Confidence            111223334444444444432 12222                     12356788888888765443332  2  7788


Q ss_pred             CccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEeeCCCCCCcccCCCCC--
Q 018478          244 SSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPEKGL--  321 (355)
Q Consensus       244 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~--  321 (355)
                      +.+++|++++  +.+..++...+      ...++|++|++++ +.++.+|.++..+++|++|++++| +|++++...+  
T Consensus       195 ~~l~~L~~s~--n~l~~~~~~~~------~~l~~L~~L~L~~-N~L~~lp~~l~~l~~L~~L~Ls~N-~i~~i~~~~f~~  264 (305)
T d1xkua_         195 NNLAKLGLSF--NSISAVDNGSL------ANTPHLRELHLNN-NKLVKVPGGLADHKYIQVVYLHNN-NISAIGSNDFCP  264 (305)
T ss_dssp             TTCCEEECCS--SCCCEECTTTG------GGSTTCCEEECCS-SCCSSCCTTTTTCSSCCEEECCSS-CCCCCCTTSSSC
T ss_pred             cccccccccc--ccccccccccc------cccccceeeeccc-ccccccccccccccCCCEEECCCC-ccCccChhhccC
Confidence            9999999998  56777765443      4678999999999 588999988999999999999998 7999875432  


Q ss_pred             ------CCCccEEEecCCch
Q 018478          322 ------PSSLLELWIGGCPL  335 (355)
Q Consensus       322 ------~~~L~~L~l~~c~~  335 (355)
                            .++|+.|++.++|.
T Consensus       265 ~~~~~~~~~L~~L~L~~N~~  284 (305)
T d1xkua_         265 PGYNTKKASYSGVSLFSNPV  284 (305)
T ss_dssp             SSCCTTSCCCSEEECCSSSS
T ss_pred             cchhcccCCCCEEECCCCcC
Confidence                  48899999999884

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.77  E-value=5.5e-19  Score=155.74  Aligned_cols=245  Identities=16%  Similarity=0.134  Sum_probs=177.5

Q ss_pred             cccEEEecCCCccchhccccccchhcccccc-CCCCCcccEEEEccCcchh-chhhhccCCCCCcEEEeeccCCcCcccc
Q 018478           66 LLEELCISSCRSLTSIFSKNELSATLESLEV-GNLPPSLKSLRVQGCSKLE-SIAETLDNSTSLETIHIFYCENMKILPS  143 (355)
Q Consensus        66 ~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~  143 (355)
                      ++++|+++++. +...       ..+   |. ...+++|++|+++++.++. .+|+.++++++|++|++++|......+.
T Consensus        51 ~v~~L~L~~~~-l~g~-------~~l---p~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~  119 (313)
T d1ogqa_          51 RVNNLDLSGLN-LPKP-------YPI---PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD  119 (313)
T ss_dssp             CEEEEEEECCC-CSSC-------EEC---CGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCG
T ss_pred             EEEEEECCCCC-CCCC-------CCC---ChHHhcCccccccccccccccccccccccccccccchhhhccccccccccc
Confidence            58888887752 2211       000   22 2456899999998754354 7888899999999999999985555667


Q ss_pred             cccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEccccCcCcccccccCCCCC-ceEEEeecCcC----CCCCCCCc
Q 018478          144 GLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSL-QKLTIGKGGLE----EDGLPTNL  218 (355)
Q Consensus       144 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L-~~L~l~~~~i~----~~~~~~~L  218 (355)
                      .+..+.+|+.+++++|.....+|..+..+++++.+++++|.....+|..+..+.++ +.+.++.+.+.    ........
T Consensus       120 ~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~  199 (313)
T d1ogqa_         120 FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL  199 (313)
T ss_dssp             GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC
T ss_pred             cccchhhhcccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccccc
Confidence            78889999999999887677788888889999999999977666788888877776 66666533222    11111244


Q ss_pred             cEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcc-cccccCC
Q 018478          219 HSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLE-RLSSSIV  297 (355)
Q Consensus       219 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~l~~~~~  297 (355)
                      ..+++..+......+..    +..+++++.+++++ + .+...+...       ..+++|+.|++++ ++++ .+|.++.
T Consensus       200 ~~l~l~~~~~~~~~~~~----~~~~~~l~~l~~~~-~-~l~~~~~~~-------~~~~~L~~L~Ls~-N~l~g~iP~~l~  265 (313)
T d1ogqa_         200 AFVDLSRNMLEGDASVL----FGSDKNTQKIHLAK-N-SLAFDLGKV-------GLSKNLNGLDLRN-NRIYGTLPQGLT  265 (313)
T ss_dssp             SEEECCSSEEEECCGGG----CCTTSCCSEEECCS-S-EECCBGGGC-------CCCTTCCEEECCS-SCCEECCCGGGG
T ss_pred             ccccccccccccccccc----cccccccccccccc-c-ccccccccc-------ccccccccccCcc-CeecccCChHHh
Confidence            56788777654433332    66789999999998 4 333333334       4678999999998 5666 8999999


Q ss_pred             CCCCccEEeeCCCCCCc-ccCCCCCCCCccEEEecCCchh
Q 018478          298 DLQNLTSLYLVGCPKLK-YFPEKGLPSSLLELWIGGCPLI  336 (355)
Q Consensus       298 ~~~~L~~L~l~~~~~l~-~~~~~~~~~~L~~L~l~~c~~l  336 (355)
                      .+++|++|++++| +++ .+|..+-+++|+.+++.+++.+
T Consensus       266 ~L~~L~~L~Ls~N-~l~g~iP~~~~L~~L~~l~l~~N~~l  304 (313)
T d1ogqa_         266 QLKFLHSLNVSFN-NLCGEIPQGGNLQRFDVSAYANNKCL  304 (313)
T ss_dssp             GCTTCCEEECCSS-EEEEECCCSTTGGGSCGGGTCSSSEE
T ss_pred             CCCCCCEEECcCC-cccccCCCcccCCCCCHHHhCCCccc
Confidence            9999999999998 787 6776555788888888887654

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=1.1e-16  Score=144.52  Aligned_cols=276  Identities=15%  Similarity=0.163  Sum_probs=179.7

Q ss_pred             CCCccEEeecccccCcccccCccCCCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccc
Q 018478            5 NSSLEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSK   84 (355)
Q Consensus         5 ~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~   84 (355)
                      +.+|++|+++++ +++++......++|++|++++ +.++.++.             +..+++|++|+++++. +..+   
T Consensus        43 l~~l~~L~l~~~-~I~~l~gl~~L~nL~~L~Ls~-N~l~~l~~-------------l~~L~~L~~L~L~~n~-i~~i---  103 (384)
T d2omza2          43 LDQVTTLQADRL-GIKSIDGVEYLNNLTQINFSN-NQLTDITP-------------LKNLTKLVDILMNNNQ-IADI---  103 (384)
T ss_dssp             HTTCCEEECCSS-CCCCCTTGGGCTTCCEEECCS-SCCCCCGG-------------GTTCTTCCEEECCSSC-CCCC---
T ss_pred             hCCCCEEECCCC-CCCCccccccCCCCCEEeCcC-CcCCCCcc-------------ccCCcccccccccccc-cccc---
Confidence            467888888764 566665444458888888888 45777664             2337888888888763 4444   


Q ss_pred             cccchhccccccCCCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCC---------------------------
Q 018478           85 NELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCEN---------------------------  137 (355)
Q Consensus        85 n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~---------------------------  137 (355)
                                +....+++|+.|+++++. ...++.. .....+.......+..                           
T Consensus       104 ----------~~l~~l~~L~~L~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (384)
T d2omza2         104 ----------TPLANLTNLTGLTLFNNQ-ITDIDPL-KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPL  171 (384)
T ss_dssp             ----------GGGTTCTTCCEEECCSSC-CCCCGGG-TTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGG
T ss_pred             ----------cccccccccccccccccc-ccccccc-cccccccccccccccccccccccccccccccccccccchhhhh
Confidence                      334455788888887765 4433321 1223333333222110                           


Q ss_pred             --------------cCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEccccCcCcccccccCCCCCceEE
Q 018478          138 --------------MKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLT  203 (355)
Q Consensus       138 --------------~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~  203 (355)
                                    ..........+++++.++++++ .+..++. ...+++|++|++++| .++.++ .+..+++|+.|+
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n-~i~~~~~-~~~~~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~  247 (384)
T d2omza2         172 ANLTTLERLDISSNKVSDISVLAKLTNLESLIATNN-QISDITP-LGILTNLDELSLNGN-QLKDIG-TLASLTNLTDLD  247 (384)
T ss_dssp             TTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSS-CCCCCGG-GGGCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEE
T ss_pred             ccccccccccccccccccccccccccccceeeccCC-ccCCCCc-ccccCCCCEEECCCC-CCCCcc-hhhcccccchhc
Confidence                          0011233455677788888776 4444432 334568888888885 455543 677788888888


Q ss_pred             Eeec---CcCCCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccce
Q 018478          204 IGKG---GLEEDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTS  280 (355)
Q Consensus       204 l~~~---~i~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  280 (355)
                      ++.+   .++.....++|+.|+++++... ....     +..++.++.+.+..  +.+..++. .       ...+++++
T Consensus       248 l~~n~l~~~~~~~~~~~L~~L~l~~~~l~-~~~~-----~~~~~~l~~l~~~~--n~l~~~~~-~-------~~~~~l~~  311 (384)
T d2omza2         248 LANNQISNLAPLSGLTKLTELKLGANQIS-NISP-----LAGLTALTNLELNE--NQLEDISP-I-------SNLKNLTY  311 (384)
T ss_dssp             CCSSCCCCCGGGTTCTTCSEEECCSSCCC-CCGG-----GTTCTTCSEEECCS--SCCSCCGG-G-------GGCTTCSE
T ss_pred             cccCccCCCCcccccccCCEeeccCcccC-CCCc-----cccccccccccccc--cccccccc-c-------chhcccCe
Confidence            8833   3334556678888888877633 2332     56778888888877  44544432 2       46789999


Q ss_pred             EEeccCCCcccccccCCCCCCccEEeeCCCCCCcccCCCCCCCCccEEEecCCc
Q 018478          281 LAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPEKGLPSSLLELWIGGCP  334 (355)
Q Consensus       281 L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~  334 (355)
                      |++++ +.++.++. +..+++|++|++++| +++.++.-+-+++|++|++++|.
T Consensus       312 L~ls~-n~l~~l~~-l~~l~~L~~L~L~~n-~l~~l~~l~~l~~L~~L~l~~N~  362 (384)
T d2omza2         312 LTLYF-NNISDISP-VSSLTKLQRLFFANN-KVSDVSSLANLTNINWLSAGHNQ  362 (384)
T ss_dssp             EECCS-SCCSCCGG-GGGCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECCSSC
T ss_pred             EECCC-CCCCCCcc-cccCCCCCEEECCCC-CCCCChhHcCCCCCCEEECCCCc
Confidence            99998 57777753 688999999999999 88888743347999999999874

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.72  E-value=1.3e-17  Score=146.69  Aligned_cols=246  Identities=17%  Similarity=0.161  Sum_probs=179.1

Q ss_pred             CCcceEecccCcccc---ccccccCcCCCCCCCccccccccccEEEecCCCccc-hhccccccchhccccccC-CCCCcc
Q 018478           29 RSLKRLDIQCCSNIR---TLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLT-SIFSKNELSATLESLEVG-NLPPSL  103 (355)
Q Consensus        29 ~~L~~L~l~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~n~~~~~~~~~~~~-~~~~~L  103 (355)
                      .+++.|++.++. +.   .+|..            +..+++|++|+++++..+. .+             |.. ..+++|
T Consensus        50 ~~v~~L~L~~~~-l~g~~~lp~~------------l~~L~~L~~L~Ls~~N~l~g~i-------------P~~i~~L~~L  103 (313)
T d1ogqa_          50 YRVNNLDLSGLN-LPKPYPIPSS------------LANLPYLNFLYIGGINNLVGPI-------------PPAIAKLTQL  103 (313)
T ss_dssp             CCEEEEEEECCC-CSSCEECCGG------------GGGCTTCSEEEEEEETTEESCC-------------CGGGGGCTTC
T ss_pred             EEEEEEECCCCC-CCCCCCCChH------------HhcCcccccccccccccccccc-------------cccccccccc
Confidence            368999999853 44   34444            4669999999998765554 34             432 456899


Q ss_pred             cEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCc-ceEEEcc
Q 018478          104 KSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKL-KEVVIRW  182 (355)
Q Consensus       104 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L-~~L~l~~  182 (355)
                      ++|++++|......+..+..+.+|+.++++.|.....+|..+.++++++.+++++|.....+|..+..+.++ +.+++++
T Consensus       104 ~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~  183 (313)
T d1ogqa_         104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR  183 (313)
T ss_dssp             SEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCS
T ss_pred             chhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccc
Confidence            999999988444455667789999999999988777888899999999999999986555778777776665 7777777


Q ss_pred             ccCcCcccccccCCCCCceEEEe----ecCcCC-CCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCc
Q 018478          183 CGRLEALPKGLHNLKSLQKLTIG----KGGLEE-DGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDD  257 (355)
Q Consensus       183 ~~~~~~~p~~l~~~~~L~~L~l~----~~~i~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  257 (355)
                      |......|..+..+.. ..+++.    ...++. ....++++.+++.++......+.     +..+++|+.|++++  +.
T Consensus       184 n~l~~~~~~~~~~l~~-~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~-----~~~~~~L~~L~Ls~--N~  255 (313)
T d1ogqa_         184 NRLTGKIPPTFANLNL-AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-----VGLSKNLNGLDLRN--NR  255 (313)
T ss_dssp             SEEEEECCGGGGGCCC-SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-----CCCCTTCCEEECCS--SC
T ss_pred             cccccccccccccccc-cccccccccccccccccccccccccccccccccccccccc-----cccccccccccCcc--Ce
Confidence            6544455556665543 356555    222332 34668999999999875443332     67889999999998  45


Q ss_pred             cc-ccCccccccCCCCCCCCccceEEeccCCCcc-cccccCCCCCCccEEeeCCCCCCcccC
Q 018478          258 MV-SFPPEDIRMGTTLPLPTSLTSLAIFSFPNLE-RLSSSIVDLQNLTSLYLVGCPKLKYFP  317 (355)
Q Consensus       258 ~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~l~~~~~~~~~L~~L~l~~~~~l~~~~  317 (355)
                      +. .+|+.+       ..+++|++|++++ ++++ .+|. +..+++|+.+++.+|+.+...|
T Consensus       256 l~g~iP~~l-------~~L~~L~~L~Ls~-N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~p  308 (313)
T d1ogqa_         256 IYGTLPQGL-------TQLKFLHSLNVSF-NNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             CEECCCGGG-------GGCTTCCEEECCS-SEEEEECCC-STTGGGSCGGGTCSSSEEESTT
T ss_pred             ecccCChHH-------hCCCCCCEEECcC-CcccccCCC-cccCCCCCHHHhCCCccccCCC
Confidence            54 788877       5778999999999 6777 6764 5678889999999986555443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2.7e-16  Score=134.96  Aligned_cols=193  Identities=21%  Similarity=0.246  Sum_probs=144.0

Q ss_pred             CCCCccEEeecccccCcccccCccCCCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhcc
Q 018478            4 TNSSLEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFS   83 (355)
Q Consensus         4 ~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~   83 (355)
                      +...+.+++.++ .+++++| ..+++++++|+|++ +.++.++...           |..+++|++|+++++ .++.+  
T Consensus         8 ~~~~~~~v~C~~-~~L~~iP-~~lp~~l~~L~Ls~-N~i~~l~~~~-----------f~~l~~L~~L~L~~N-~l~~l--   70 (266)
T d1p9ag_           8 KVASHLEVNCDK-RNLTALP-PDLPKDTTILHLSE-NLLYTFSLAT-----------LMPYTRLTQLNLDRA-ELTKL--   70 (266)
T ss_dssp             CSTTCCEEECTT-SCCSSCC-SCCCTTCCEEECTT-SCCSEEEGGG-----------GTTCTTCCEEECTTS-CCCEE--
T ss_pred             ccCCCeEEEccC-CCCCeeC-cCcCcCCCEEECcC-CcCCCcCHHH-----------hhccccccccccccc-ccccc--
Confidence            344566666653 4688887 45678999999999 6788888654           567999999999986 66777  


Q ss_pred             ccccchhccccccCCCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCc
Q 018478           84 KNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLE  163 (355)
Q Consensus        84 ~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~  163 (355)
                                 +....+++|+.|++++|. +...+..+..+++|+.|+++++......+..+..+.+++.|++.+| .+.
T Consensus        71 -----------~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n-~l~  137 (266)
T d1p9ag_          71 -----------QVDGTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELK  137 (266)
T ss_dssp             -----------ECCSCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS-CCC
T ss_pred             -----------cccccccccccccccccc-ccccccccccccccccccccccccceeecccccccccccccccccc-ccc
Confidence                       666677899999999987 7777778888999999999998844444566777899999999987 566


Q ss_pred             CCCC-CCCCCCCcceEEEccccCcCccc-ccccCCCCCceEEEeecC---cCC-CCCCCCccEEEecCCc
Q 018478          164 SFPE-GGLPCAKLKEVVIRWCGRLEALP-KGLHNLKSLQKLTIGKGG---LEE-DGLPTNLHSLDIRGNM  227 (355)
Q Consensus       164 ~~~~-~~~~~~~L~~L~l~~~~~~~~~p-~~l~~~~~L~~L~l~~~~---i~~-~~~~~~L~~L~l~~~~  227 (355)
                      .++. .+..+++++.+++++|+ ++.++ ..+..+++|++|+++.+.   +|. ....++|+.|++++|+
T Consensus       138 ~l~~~~~~~l~~l~~l~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         138 TLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             CCCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             eeccccccccccchhccccccc-ccccCccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCC
Confidence            6664 44558899999999965 44444 567788888888887333   332 2234566777776654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.70  E-value=1.5e-15  Score=132.76  Aligned_cols=241  Identities=16%  Similarity=0.212  Sum_probs=161.1

Q ss_pred             CCccEEeecccccCcccccCccC--CCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhcc
Q 018478            6 SSLEILEIWSCRSLTYLAAVQLP--RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFS   83 (355)
Q Consensus         6 ~~L~~L~l~~~~~l~~l~~~~~~--~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~   83 (355)
                      +++++|+++++ ++++++...+.  ++|++|+++++. +..++...           |..+++|+.|+++++ .++.+  
T Consensus        31 ~~l~~L~Ls~N-~i~~l~~~~f~~l~~L~~L~l~~n~-~~~i~~~~-----------f~~l~~L~~L~l~~n-~l~~l--   94 (305)
T d1xkua_          31 PDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNK-ISKISPGA-----------FAPLVKLERLYLSKN-QLKEL--   94 (305)
T ss_dssp             TTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTT-----------TTTCTTCCEEECCSS-CCSBC--
T ss_pred             CCCCEEECcCC-cCCCcChhHhhcccccccccccccc-ccccchhh-----------hhCCCccCEecccCC-ccCcC--
Confidence            67999999975 78899876665  899999999965 56665443           566899999999986 56666  


Q ss_pred             ccccchhccccccCCCCCcccEEEEccCcchhchh-hhccCCCCCcEEEeeccCCcCc--ccccccCCCCCceEeccccC
Q 018478           84 KNELSATLESLEVGNLPPSLKSLRVQGCSKLESIA-ETLDNSTSLETIHIFYCENMKI--LPSGLHNLRQLQEISIEGCG  160 (355)
Q Consensus        84 ~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~  160 (355)
                                 +.. ..+.++.|++.++. +..++ ..+.....+..+....+.....  .+..+..+++|+.+++.+| 
T Consensus        95 -----------~~~-~~~~l~~L~~~~n~-l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n-  160 (305)
T d1xkua_          95 -----------PEK-MPKTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-  160 (305)
T ss_dssp             -----------CSS-CCTTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-
T ss_pred             -----------ccc-hhhhhhhhhccccc-hhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccC-
Confidence                       544 34689999999887 55544 4456678888888877653322  2446777899999999987 


Q ss_pred             CCcCCCCCCCCCCCcceEEEccccCcCcccccccCCCCCceEEEeecCcCCCCCCCCccEEEecCCcchhhhhhhhcccC
Q 018478          161 NLESFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEEDGLPTNLHSLDIRGNMEIWKSMIEWGQGF  240 (355)
Q Consensus       161 ~l~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  240 (355)
                      .+..+|...  .++|+.|++++|......+..+..++.++.|.++.+.+..                    .+..+   +
T Consensus       161 ~l~~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~--------------------~~~~~---~  215 (305)
T d1xkua_         161 NITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA--------------------VDNGS---L  215 (305)
T ss_dssp             CCCSCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE--------------------ECTTT---G
T ss_pred             CccccCccc--CCccCEEECCCCcCCCCChhHhhccccccccccccccccc--------------------ccccc---c
Confidence            567777655  4699999999977666666677787777777665222221                    11111   3


Q ss_pred             CCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCccccccc-------CCCCCCccEEeeCCCC
Q 018478          241 HRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSS-------IVDLQNLTSLYLVGCP  311 (355)
Q Consensus       241 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-------~~~~~~L~~L~l~~~~  311 (355)
                      .++++|++|++++  +.++.+|..+       ..+++|++|++++ +.++.++..       ....++|+.|++.+|+
T Consensus       216 ~~l~~L~~L~L~~--N~L~~lp~~l-------~~l~~L~~L~Ls~-N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         216 ANTPHLRELHLNN--NKLVKVPGGL-------ADHKYIQVVYLHN-NNISAIGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             GGSTTCCEEECCS--SCCSSCCTTT-------TTCSSCCEEECCS-SCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             cccccceeeeccc--cccccccccc-------ccccCCCEEECCC-CccCccChhhccCcchhcccCCCCEEECCCCc
Confidence            4455566666655  3455555444       3445666666665 345554321       1335567777777663

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=3.9e-16  Score=133.94  Aligned_cols=179  Identities=18%  Similarity=0.186  Sum_probs=109.0

Q ss_pred             ccCCCCCcccEEEEccCcchhchh-hhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCC
Q 018478           95 EVGNLPPSLKSLRVQGCSKLESIA-ETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCA  173 (355)
Q Consensus        95 ~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~  173 (355)
                      |. .+++++++|++++|. ++.+| ..|..+++|++|++++|. ++.++. ++.+++|+.|++++| .+...+..+..++
T Consensus        26 P~-~lp~~l~~L~Ls~N~-i~~l~~~~f~~l~~L~~L~L~~N~-l~~l~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~  100 (266)
T d1p9ag_          26 PP-DLPKDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRAE-LTKLQV-DGTLPVLGTLDLSHN-QLQSLPLLGQTLP  100 (266)
T ss_dssp             CS-CCCTTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTSC-CCEEEC-CSCCTTCCEEECCSS-CCSSCCCCTTTCT
T ss_pred             Cc-CcCcCCCEEECcCCc-CCCcCHHHhhcccccccccccccc-cccccc-ccccccccccccccc-ccccccccccccc
Confidence            53 345688999999887 66665 457788899999998876 666653 467888889998887 5677777777788


Q ss_pred             CcceEEEccccCcCcccccccCCCCCceEEEeecCcCCCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecc
Q 018478          174 KLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEEDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEG  253 (355)
Q Consensus       174 ~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  253 (355)
                      +|+.|+++++......+..+..+.++++|.++                   +|.. ..++..+   +..+++++.+++++
T Consensus       101 ~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~-------------------~n~l-~~l~~~~---~~~l~~l~~l~l~~  157 (266)
T d1p9ag_         101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLK-------------------GNEL-KTLPPGL---LTPTPKLEKLSLAN  157 (266)
T ss_dssp             TCCEEECCSSCCCCCCSSTTTTCTTCCEEECT-------------------TSCC-CCCCTTT---TTTCTTCCEEECTT
T ss_pred             ccccccccccccceeecccccccccccccccc-------------------cccc-ceecccc---ccccccchhccccc
Confidence            88888888865444333455556666665554                   3321 1111111   34445555555554


Q ss_pred             cCCcccccCccccccCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEeeCCC
Q 018478          254 CDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGC  310 (355)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~  310 (355)
                        +.++.++.+.+      ..+++|++|++++ +.++.+|..+..+++|+.|++++|
T Consensus       158 --N~l~~~~~~~~------~~l~~L~~L~Ls~-N~L~~lp~~~~~~~~L~~L~L~~N  205 (266)
T d1p9ag_         158 --NNLTELPAGLL------NGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHGN  205 (266)
T ss_dssp             --SCCSCCCTTTT------TTCTTCCEEECCS-SCCCCCCTTTTTTCCCSEEECCSC
T ss_pred             --ccccccCcccc------ccccccceeeccc-CCCcccChhHCCCCCCCEEEecCC
Confidence              34444443321      2345555555555 345555555555555555555554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.68  E-value=7.8e-15  Score=130.29  Aligned_cols=93  Identities=29%  Similarity=0.414  Sum_probs=72.3

Q ss_pred             CccEEeecccccCcccccCccCCCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccc
Q 018478            7 SLEILEIWSCRSLTYLAAVQLPRSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNE   86 (355)
Q Consensus         7 ~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~   86 (355)
                      ++++|+++++ +++++|+  .+++|++|++++ ++++.+|..               ..+|+.|++.++ .++.+     
T Consensus        39 ~l~~LdLs~~-~L~~lp~--~~~~L~~L~Ls~-N~l~~lp~~---------------~~~L~~L~l~~n-~l~~l-----   93 (353)
T d1jl5a_          39 QAHELELNNL-GLSSLPE--LPPHLESLVASC-NSLTELPEL---------------PQSLKSLLVDNN-NLKAL-----   93 (353)
T ss_dssp             TCSEEECTTS-CCSCCCS--CCTTCSEEECCS-SCCSSCCCC---------------CTTCCEEECCSS-CCSCC-----
T ss_pred             CCCEEEeCCC-CCCCCCC--CCCCCCEEECCC-CCCcccccc---------------hhhhhhhhhhhc-ccchh-----
Confidence            6889999865 6888873  468999999997 678888764               567999999875 44544     


Q ss_pred             cchhccccccCCCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccC
Q 018478           87 LSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCE  136 (355)
Q Consensus        87 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  136 (355)
                              +  ..+++|++|++++|. +..+|. ++.+++|++|++.++.
T Consensus        94 --------~--~lp~~L~~L~L~~n~-l~~lp~-~~~l~~L~~L~l~~~~  131 (353)
T d1jl5a_          94 --------S--DLPPLLEYLGVSNNQ-LEKLPE-LQNSSFLKIIDVDNNS  131 (353)
T ss_dssp             --------C--SCCTTCCEEECCSSC-CSSCCC-CTTCTTCCEEECCSSC
T ss_pred             --------h--hhccccccccccccc-cccccc-hhhhccceeecccccc
Confidence                    3  345679999999987 777774 5678999999998876

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=9.7e-16  Score=132.71  Aligned_cols=201  Identities=19%  Similarity=0.249  Sum_probs=111.9

Q ss_pred             ccCCCCCcccEEEEccCcchhchhh-hccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCC-CCCCCC
Q 018478           95 EVGNLPPSLKSLRVQGCSKLESIAE-TLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFP-EGGLPC  172 (355)
Q Consensus        95 ~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~  172 (355)
                      |. ..++++++|++++|. ++.+|+ .+.++++|++|+++++......+..+..++.++.+.+..+..++.++ ..+..+
T Consensus        27 P~-~ip~~~~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l  104 (284)
T d1ozna_          27 PV-GIPAASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGL  104 (284)
T ss_dssp             CT-TCCTTCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTC
T ss_pred             CC-CCCCCCCEEECcCCc-CCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhccc
Confidence            54 355788999999887 777764 57888899999998877333334555667788888776666666664 456678


Q ss_pred             CCcceEEEccccCcCcccccccCCCCCceEEEeecCcC---C--CCCCCCccEEEecCCcchhhhhhhhcccCCCCCccc
Q 018478          173 AKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLE---E--DGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLR  247 (355)
Q Consensus       173 ~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~---~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~  247 (355)
                      ++|+.|++++|......+..+..+++|+.++++.+.+.   .  ....++|+.|++.+|.. +.++...   +.++++|+
T Consensus       105 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l-~~l~~~~---f~~l~~L~  180 (284)
T d1ozna_         105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI-SSVPERA---FRGLHSLD  180 (284)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CEECTTT---TTTCTTCC
T ss_pred             ccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcc-cccchhh---hccccccc
Confidence            88888888886543333345566666777666532222   1  11234455555555432 2222111   44445555


Q ss_pred             eeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCccccc-ccCCCCCCccEEeeCCC
Q 018478          248 ELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLS-SSIVDLQNLTSLYLVGC  310 (355)
Q Consensus       248 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~~  310 (355)
                      .+++++  +.+..++++.+      ..+++|++|++++ +.+..++ ..+..+++|++|++++|
T Consensus       181 ~l~l~~--N~l~~i~~~~f------~~l~~L~~L~l~~-N~i~~~~~~~~~~~~~L~~L~l~~N  235 (284)
T d1ozna_         181 RLLLHQ--NRVAHVHPHAF------RDLGRLMTLYLFA-NNLSALPTEALAPLRALQYLRLNDN  235 (284)
T ss_dssp             EEECCS--SCCCEECTTTT------TTCTTCCEEECCS-SCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred             hhhhhh--ccccccChhHh------hhhhhcccccccc-cccccccccccccccccCEEEecCC
Confidence            555554  23333322111      2334455555554 3333332 23344455555555444

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=4.7e-15  Score=128.32  Aligned_cols=210  Identities=19%  Similarity=0.250  Sum_probs=144.6

Q ss_pred             EEEccCcchhchhhhccCCCCCcEEEeeccCCcCccc-ccccCCCCCceEeccccCCCcCCC-CCCCCCCCcceEEEccc
Q 018478          106 LRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILP-SGLHNLRQLQEISIEGCGNLESFP-EGGLPCAKLKEVVIRWC  183 (355)
Q Consensus       106 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~~  183 (355)
                      ++.+++. ++.+|..+  .+++++|++++|. ++.++ ..+.++++|+.++++++ .+..++ ..+..+..++.+.+..+
T Consensus        16 v~c~~~~-L~~iP~~i--p~~~~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~ls~n-~l~~i~~~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          16 TSCPQQG-LQAVPVGI--PAASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             EECCSSC-CSSCCTTC--CTTCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSC
T ss_pred             EEcCCCC-CCccCCCC--CCCCCEEECcCCc-CCCCCHHHhhccccccccccccc-cccccccccccccccccccccccc
Confidence            3444333 67777655  3678888888877 66666 45778888888888876 455444 34455677888877666


Q ss_pred             cCcCcc-cccccCCCCCceEEEeecCcC-----CCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCc
Q 018478          184 GRLEAL-PKGLHNLKSLQKLTIGKGGLE-----EDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDD  257 (355)
Q Consensus       184 ~~~~~~-p~~l~~~~~L~~L~l~~~~i~-----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  257 (355)
                      ..++.+ +..+..+++|++|+++.+.+.     ......+|+.+++.+|.. +.++...   +..+++|++|++++  +.
T Consensus        91 ~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l-~~i~~~~---f~~~~~L~~L~l~~--N~  164 (284)
T d1ozna_          91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL-QALPDDT---FRDLGNLTHLFLHG--NR  164 (284)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTT---TTTCTTCCEEECCS--SC
T ss_pred             cccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccc-cccChhH---hccccchhhccccc--Cc
Confidence            666665 456788888888888833322     233567888888888764 3333222   66778888888887  56


Q ss_pred             ccccCccccccCCCCCCCCccceEEeccCCCcccc-cccCCCCCCccEEeeCCCCCCcccCCCCC--CCCccEEEecCCc
Q 018478          258 MVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERL-SSSIVDLQNLTSLYLVGCPKLKYFPEKGL--PSSLLELWIGGCP  334 (355)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~--~~~L~~L~l~~c~  334 (355)
                      ++.+++..+      ..+++|+.++++++ .+..+ |..+..+++|++|++++| +++.++...+  +++|++|++.++|
T Consensus       165 l~~l~~~~f------~~l~~L~~l~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         165 ISSVPERAF------RGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNP  236 (284)
T ss_dssp             CCEECTTTT------TTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             ccccchhhh------ccccccchhhhhhc-cccccChhHhhhhhhccccccccc-ccccccccccccccccCEEEecCCC
Confidence            777765443      56778888888884 55544 667788888888888887 6777765433  6888888888754

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.58  E-value=1.6e-13  Score=121.68  Aligned_cols=257  Identities=25%  Similarity=0.226  Sum_probs=157.5

Q ss_pred             CCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccccchhccccccCCCCCcccEEEE
Q 018478           29 RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRV  108 (355)
Q Consensus        29 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~~~~~~L~~L~l  108 (355)
                      .++++|+++++ .++.+|..               .++|++|++++ ..++.+             |.  .+.+|+.|++
T Consensus        38 ~~l~~LdLs~~-~L~~lp~~---------------~~~L~~L~Ls~-N~l~~l-------------p~--~~~~L~~L~l   85 (353)
T d1jl5a_          38 RQAHELELNNL-GLSSLPEL---------------PPHLESLVASC-NSLTEL-------------PE--LPQSLKSLLV   85 (353)
T ss_dssp             HTCSEEECTTS-CCSCCCSC---------------CTTCSEEECCS-SCCSSC-------------CC--CCTTCCEEEC
T ss_pred             cCCCEEEeCCC-CCCCCCCC---------------CCCCCEEECCC-CCCccc-------------cc--chhhhhhhhh
Confidence            46899999994 58888753               67899999986 477777             63  3568999999


Q ss_pred             ccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEccccCcCc
Q 018478          109 QGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEA  188 (355)
Q Consensus       109 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~  188 (355)
                      .+|. ++.++. +  .++|++|++++|. +..+|. ++.+++|+.+++.++ .+...+...   ..+..+.+..+.... 
T Consensus        86 ~~n~-l~~l~~-l--p~~L~~L~L~~n~-l~~lp~-~~~l~~L~~L~l~~~-~~~~~~~~~---~~l~~l~~~~~~~~~-  154 (353)
T d1jl5a_          86 DNNN-LKALSD-L--PPLLEYLGVSNNQ-LEKLPE-LQNSSFLKIIDVDNN-SLKKLPDLP---PSLEFIAAGNNQLEE-  154 (353)
T ss_dssp             CSSC-CSCCCS-C--CTTCCEEECCSSC-CSSCCC-CTTCTTCCEEECCSS-CCSCCCCCC---TTCCEEECCSSCCSS-
T ss_pred             hhcc-cchhhh-h--ccccccccccccc-cccccc-hhhhccceeeccccc-ccccccccc---ccccchhhccccccc-
Confidence            9987 666653 1  3579999999987 777875 578999999999886 444443322   344444444322211 


Q ss_pred             ccccccCCCCCceEEEe-----------------------ecCcCCCCCCCCccEEEecCCcchhhhhhhhc--------
Q 018478          189 LPKGLHNLKSLQKLTIG-----------------------KGGLEEDGLPTNLHSLDIRGNMEIWKSMIEWG--------  237 (355)
Q Consensus       189 ~p~~l~~~~~L~~L~l~-----------------------~~~i~~~~~~~~L~~L~l~~~~~~~~~~~~~~--------  237 (355)
                       ...+..++.++.+.++                       ...++....++.++.+++++|.... .+....        
T Consensus       155 -~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~-~~~~~~~l~~~~~~  232 (353)
T d1jl5a_         155 -LPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVR  232 (353)
T ss_dssp             -CCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS-CCSCCTTCCEEECC
T ss_pred             -cccccccccceecccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccc
Confidence             1233444445554443                       2233344456788999988775332 111000        


Q ss_pred             -----ccCCCCCccceeEeccc-CCcccccCcccccc-------CCCCCCCCccceEEeccCCCcccccccCCCCCCccE
Q 018478          238 -----QGFHRFSSLRELRIEGC-DDDMVSFPPEDIRM-------GTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTS  304 (355)
Q Consensus       238 -----~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~-------~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~  304 (355)
                           ......+.+...++... +..+..++......       ......+++|++|++++ +.++.+|   ..+++|++
T Consensus       233 ~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~-N~l~~lp---~~~~~L~~  308 (353)
T d1jl5a_         233 DNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSN-NKLIELP---ALPPRLER  308 (353)
T ss_dssp             SSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCS-SCCSCCC---CCCTTCCE
T ss_pred             cccccccccccccccccccccccccccccccchhcccccccCccccccccCCCCCEEECCC-CccCccc---cccCCCCE
Confidence                 00001122222332220 11111111111000       00113457899999998 5788888   45789999


Q ss_pred             EeeCCCCCCcccCCCCCCCCccEEEecCCchhhH
Q 018478          305 LYLVGCPKLKYFPEKGLPSSLLELWIGGCPLIEE  338 (355)
Q Consensus       305 L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~l~~  338 (355)
                      |++++| +|+++|.  .+++|++|++++|+ ++.
T Consensus       309 L~L~~N-~L~~l~~--~~~~L~~L~L~~N~-L~~  338 (353)
T d1jl5a_         309 LIASFN-HLAEVPE--LPQNLKQLHVEYNP-LRE  338 (353)
T ss_dssp             EECCSS-CCSCCCC--CCTTCCEEECCSSC-CSS
T ss_pred             EECCCC-cCCcccc--ccCCCCEEECcCCc-CCC
Confidence            999988 7998875  56899999999987 554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.54  E-value=3.6e-14  Score=118.43  Aligned_cols=186  Identities=17%  Similarity=0.181  Sum_probs=107.7

Q ss_pred             CCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEE
Q 018478          100 PPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVV  179 (355)
Q Consensus       100 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~  179 (355)
                      +.+|+.|++.+|. ++.++ ++..+++|++|++++|. +..++ .+..+++++.+++++| .++.++ .+..+++|+.+.
T Consensus        40 l~~L~~L~l~~~~-i~~l~-~l~~l~~L~~L~ls~n~-i~~~~-~l~~l~~l~~l~~~~n-~~~~i~-~l~~l~~L~~l~  113 (227)
T d1h6ua2          40 LDGITTLSAFGTG-VTTIE-GVQYLNNLIGLELKDNQ-ITDLA-PLKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLD  113 (227)
T ss_dssp             HHTCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSSC-CCCCG-GGTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEE
T ss_pred             cCCcCEEECCCCC-CCcch-hHhcCCCCcEeecCCce-eeccc-cccccccccccccccc-cccccc-cccccccccccc
Confidence            3567888887776 66663 46777888888887776 44443 2667777777777765 344443 344567777777


Q ss_pred             EccccCcCcccccccCCCCCceEEEeecCcCCCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCccc
Q 018478          180 IRWCGRLEALPKGLHNLKSLQKLTIGKGGLEEDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMV  259 (355)
Q Consensus       180 l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  259 (355)
                      ++++... .. ..+...+.++.+                   .+.++.... ...     +..+++|++|++++  +.+.
T Consensus       114 l~~~~~~-~~-~~~~~~~~~~~l-------------------~~~~~~~~~-~~~-----~~~~~~L~~L~l~~--n~~~  164 (227)
T d1h6ua2         114 LTSTQIT-DV-TPLAGLSNLQVL-------------------YLDLNQITN-ISP-----LAGLTNLQYLSIGN--AQVS  164 (227)
T ss_dssp             CTTSCCC-CC-GGGTTCTTCCEE-------------------ECCSSCCCC-CGG-----GGGCTTCCEEECCS--SCCC
T ss_pred             ccccccc-cc-chhccccchhhh-------------------hchhhhhch-hhh-----hccccccccccccc--cccc
Confidence            7665322 21 233444444444                   444433221 111     34456666666665  2333


Q ss_pred             ccCccccccCCCCCCCCccceEEeccCCCcccccccCCCCCCccEEeeCCCCCCcccCCCCCCCCccEEEec
Q 018478          260 SFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPEKGLPSSLLELWIG  331 (355)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~  331 (355)
                      ..+. +       ..+++|++|++++ +.++.++. +..+++|++|++++| +++.++.-..+++|++|++.
T Consensus       165 ~~~~-l-------~~l~~L~~L~Ls~-n~l~~l~~-l~~l~~L~~L~Ls~N-~lt~i~~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         165 DLTP-L-------ANLSKLTTLKADD-NKISDISP-LASLPNLIEVHLKNN-QISDVSPLANTSNLFIVTLT  225 (227)
T ss_dssp             CCGG-G-------TTCTTCCEEECCS-SCCCCCGG-GGGCTTCCEEECTTS-CCCBCGGGTTCTTCCEEEEE
T ss_pred             cchh-h-------cccccceecccCC-CccCCChh-hcCCCCCCEEECcCC-cCCCCcccccCCCCCEEEee
Confidence            3222 2       2455677777766 35665543 566677777777776 67776643445777777764

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.54  E-value=6.1e-14  Score=117.06  Aligned_cols=188  Identities=15%  Similarity=0.169  Sum_probs=129.5

Q ss_pred             cccccccEEEecCCCccchhccccccchhccccccCCCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcc
Q 018478           62 YTSYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKIL  141 (355)
Q Consensus        62 ~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  141 (355)
                      +.+.+|+.|.+.++ .++.+             +....+++|+.|++++|. +..+++ +..+++|+++.+++|. ++.+
T Consensus        38 ~~l~~L~~L~l~~~-~i~~l-------------~~l~~l~~L~~L~ls~n~-i~~~~~-l~~l~~l~~l~~~~n~-~~~i  100 (227)
T d1h6ua2          38 ADLDGITTLSAFGT-GVTTI-------------EGVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGNP-LKNV  100 (227)
T ss_dssp             HHHHTCCEEECTTS-CCCCC-------------TTGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSCC-CSCC
T ss_pred             HHcCCcCEEECCCC-CCCcc-------------hhHhcCCCCcEeecCCce-eecccc-cccccccccccccccc-cccc
Confidence            45899999999987 45666             544567899999999997 666654 7889999999999987 6666


Q ss_pred             cccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEccccCcCcccccccCCCCCceEEEeecCcCCCCCCCCccEE
Q 018478          142 PSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEEDGLPTNLHSL  221 (355)
Q Consensus       142 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~~~~~~~L~~L  221 (355)
                      + .+..+++|+.+.++++.. ... ..+...+.++.+.+.++.. ... ..+..+++|++|.+                 
T Consensus       101 ~-~l~~l~~L~~l~l~~~~~-~~~-~~~~~~~~~~~l~~~~~~~-~~~-~~~~~~~~L~~L~l-----------------  158 (227)
T d1h6ua2         101 S-AIAGLQSIKTLDLTSTQI-TDV-TPLAGLSNLQVLYLDLNQI-TNI-SPLAGLTNLQYLSI-----------------  158 (227)
T ss_dssp             G-GGTTCTTCCEEECTTSCC-CCC-GGGTTCTTCCEEECCSSCC-CCC-GGGGGCTTCCEEEC-----------------
T ss_pred             c-cccccccccccccccccc-ccc-chhccccchhhhhchhhhh-chh-hhhccccccccccc-----------------
Confidence            4 578899999999998743 333 2244467889998887543 222 24555555555544                 


Q ss_pred             EecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccccccCCCCCC
Q 018478          222 DIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSIVDLQN  301 (355)
Q Consensus       222 ~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~  301 (355)
                        .+|... ....     +.++++|++|++++  +.++.++. +       ..+++|++|++++| .++.++. +.++++
T Consensus       159 --~~n~~~-~~~~-----l~~l~~L~~L~Ls~--n~l~~l~~-l-------~~l~~L~~L~Ls~N-~lt~i~~-l~~l~~  218 (227)
T d1h6ua2         159 --GNAQVS-DLTP-----LANLSKLTTLKADD--NKISDISP-L-------ASLPNLIEVHLKNN-QISDVSP-LANTSN  218 (227)
T ss_dssp             --CSSCCC-CCGG-----GTTCTTCCEEECCS--SCCCCCGG-G-------GGCTTCCEEECTTS-CCCBCGG-GTTCTT
T ss_pred             --cccccc-cchh-----hcccccceecccCC--CccCCChh-h-------cCCCCCCEEECcCC-cCCCCcc-cccCCC
Confidence              444322 1121     56677788888877  35666543 2       35567888888874 6777763 577888


Q ss_pred             ccEEeeC
Q 018478          302 LTSLYLV  308 (355)
Q Consensus       302 L~~L~l~  308 (355)
                      |+.|+++
T Consensus       219 L~~L~ls  225 (227)
T d1h6ua2         219 LFIVTLT  225 (227)
T ss_dssp             CCEEEEE
T ss_pred             CCEEEee
Confidence            8888775

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=7.3e-14  Score=117.62  Aligned_cols=214  Identities=22%  Similarity=0.246  Sum_probs=124.0

Q ss_pred             cEEEecCCCccchhccccccchhccccccCCCCCcccEEEEccCcchhchhh-hccCCCCCcEEEeeccCCcCccc-ccc
Q 018478           68 EELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAE-TLDNSTSLETIHIFYCENMKILP-SGL  145 (355)
Q Consensus        68 ~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~  145 (355)
                      +.++..+ ..++.+             |. ..++++++|++++|. ++.+|. .|.++++|++|++++|...+.++ ..+
T Consensus        11 ~~i~c~~-~~l~~i-------------P~-~l~~~l~~L~Ls~n~-i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f   74 (242)
T d1xwdc1          11 RVFLCQE-SKVTEI-------------PS-DLPRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVF   74 (242)
T ss_dssp             SEEEEES-CSCSSC-------------CS-CSCSCCSEEEEESCC-CCEECTTTTTTCTTCCEEEEESCTTCCEECSSSE
T ss_pred             CEEEEeC-CCCCCc-------------CC-CCCCCCCEEECcCCc-CCccChhHhhccchhhhhhhccccccceeecccc
Confidence            5566654 345555             54 445688999999887 777765 46788999999999888555544 456


Q ss_pred             cCCCCCceEeccccCCCcCCC-CCCCCCCCcceEEEccccCcCcccccccCCCCCceEEEeecCcCCCCCCCCccEEEec
Q 018478          146 HNLRQLQEISIEGCGNLESFP-EGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGGLEEDGLPTNLHSLDIR  224 (355)
Q Consensus       146 ~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~i~~~~~~~~L~~L~l~  224 (355)
                      ..+++++.+.+..+..+...+ ..+..+++|+.+++.++. +...+ .+..+.+++.+...                ...
T Consensus        75 ~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~-l~~~~-~~~~~~~l~~l~~~----------------~~~  136 (242)
T d1xwdc1          75 SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG-IKHLP-DVHKIHSLQKVLLD----------------IQD  136 (242)
T ss_dssp             ESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCC-CCSCC-CCTTTCBSSCEEEE----------------EES
T ss_pred             ccccccccccccccccccccccccccccccccccccchhh-hcccc-cccccccccccccc----------------ccc
Confidence            778888888887655555544 445678888888888853 43332 23334444444332                111


Q ss_pred             CCcchhhhhhhhcccCCCC-CccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCccccccc-CCCCCCc
Q 018478          225 GNMEIWKSMIEWGQGFHRF-SSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSS-IVDLQNL  302 (355)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L  302 (355)
                      ++ .+..+....   +.++ ..++.+++++  +.++.++...       ...++++++...+++.++.+|.. +.++++|
T Consensus       137 n~-~l~~i~~~~---~~~~~~~l~~L~l~~--n~l~~i~~~~-------~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L  203 (242)
T d1xwdc1         137 NI-NIHTIERNS---FVGLSFESVILWLNK--NGIQEIHNCA-------FNGTQLDELNLSDNNNLEELPNDVFHGASGP  203 (242)
T ss_dssp             CT-TCCEECTTS---STTSBSSCEEEECCS--SCCCEECTTT-------TTTCCEEEEECTTCTTCCCCCTTTTTTSCCC
T ss_pred             cc-ccccccccc---cccccccceeeeccc--cccccccccc-------ccchhhhccccccccccccccHHHhcCCCCC
Confidence            11 111111110   2232 2555566655  4555555444       23345555554444666666653 4667777


Q ss_pred             cEEeeCCCCCCcccCCCCCCCCccEEEe
Q 018478          303 TSLYLVGCPKLKYFPEKGLPSSLLELWI  330 (355)
Q Consensus       303 ~~L~l~~~~~l~~~~~~~~~~~L~~L~l  330 (355)
                      ++|+++++ +++.+|..++ .++..|..
T Consensus       204 ~~L~Ls~N-~l~~l~~~~~-~~l~~L~~  229 (242)
T d1xwdc1         204 VILDISRT-RIHSLPSYGL-ENLKKLRA  229 (242)
T ss_dssp             SEEECTTS-CCCCCCSSSC-TTCCEEES
T ss_pred             CEEECCCC-cCCccCHHHH-cCCccccc
Confidence            77777776 5777665433 44444433

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=4e-13  Score=112.97  Aligned_cols=203  Identities=20%  Similarity=0.215  Sum_probs=118.0

Q ss_pred             ccccEEEecCCCccchhccccccchhccccccC--CCCCcccEEEEccCcchhchh-hhccCCCCCcEEEeeccCCcCcc
Q 018478           65 YLLEELCISSCRSLTSIFSKNELSATLESLEVG--NLPPSLKSLRVQGCSKLESIA-ETLDNSTSLETIHIFYCENMKIL  141 (355)
Q Consensus        65 ~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~  141 (355)
                      +++++|+++++ .++.+             +..  ..+++|++|++++|.....++ ..+..+++++++.+..+..+...
T Consensus        29 ~~l~~L~Ls~n-~i~~l-------------~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~   94 (242)
T d1xwdc1          29 RNAIELRFVLT-KLRVI-------------QKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI   94 (242)
T ss_dssp             SCCSEEEEESC-CCCEE-------------CTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEE
T ss_pred             CCCCEEECcCC-cCCcc-------------ChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccc
Confidence            47999999875 56666             543  345899999999998545454 45678999999998876556554


Q ss_pred             -cccccCCCCCceEeccccCCCcCCCCCCCCCCCcceE---EEccccCcCccc-ccccCCCCCceEEEeecCcCCCCCCC
Q 018478          142 -PSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEV---VIRWCGRLEALP-KGLHNLKSLQKLTIGKGGLEEDGLPT  216 (355)
Q Consensus       142 -~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L---~l~~~~~~~~~p-~~l~~~~~L~~L~l~~~~i~~~~~~~  216 (355)
                       +..+.++++|+.+++.++ .+...+. ...+.+++.+   ...+ ..+..++ ..+..++                  .
T Consensus        95 ~~~~~~~l~~L~~l~l~~~-~l~~~~~-~~~~~~l~~l~~~~~~n-~~l~~i~~~~~~~~~------------------~  153 (242)
T d1xwdc1          95 NPEAFQNLPNLQYLLISNT-GIKHLPD-VHKIHSLQKVLLDIQDN-INIHTIERNSFVGLS------------------F  153 (242)
T ss_dssp             CTTSEECCTTCCEEEEESC-CCCSCCC-CTTTCBSSCEEEEEESC-TTCCEECTTSSTTSB------------------S
T ss_pred             ccccccccccccccccchh-hhccccc-ccccccccccccccccc-ccccccccccccccc------------------c
Confidence             456788999999999987 5555543 2223344444   3333 3344433 2222222                  2


Q ss_pred             CccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCcccccccC
Q 018478          217 NLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLSSSI  296 (355)
Q Consensus       217 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~  296 (355)
                      .++.+++.++.. +.+...    +...+++.++.... ++.++.++.+.+      ..+++|++|++++ +.++.+|.  
T Consensus       154 ~l~~L~l~~n~l-~~i~~~----~~~~~~l~~~~~l~-~n~l~~l~~~~f------~~l~~L~~L~Ls~-N~l~~l~~--  218 (242)
T d1xwdc1         154 ESVILWLNKNGI-QEIHNC----AFNGTQLDELNLSD-NNNLEELPNDVF------HGASGPVILDISR-TRIHSLPS--  218 (242)
T ss_dssp             SCEEEECCSSCC-CEECTT----TTTTCCEEEEECTT-CTTCCCCCTTTT------TTSCCCSEEECTT-SCCCCCCS--
T ss_pred             cceeeecccccc-cccccc----cccchhhhcccccc-ccccccccHHHh------cCCCCCCEEECCC-CcCCccCH--
Confidence            444455554432 222211    22334555554444 456667765442      4567777788877 56777765  


Q ss_pred             CCCCCccEEeeCCCCCCcccC
Q 018478          297 VDLQNLTSLYLVGCPKLKYFP  317 (355)
Q Consensus       297 ~~~~~L~~L~l~~~~~l~~~~  317 (355)
                      ..+.++..|..-++.+++.+|
T Consensus       219 ~~~~~l~~L~~l~~~~l~~lp  239 (242)
T d1xwdc1         219 YGLENLKKLRARSTYNLKKLP  239 (242)
T ss_dssp             SSCTTCCEEESSSEESSSCSC
T ss_pred             HHHcCCcccccCcCCCCCcCC
Confidence            233444443333333444444

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=8.6e-15  Score=126.57  Aligned_cols=87  Identities=14%  Similarity=0.310  Sum_probs=52.5

Q ss_pred             CcccEEEEccCcch-hchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCC--CCCCCCCCCcce
Q 018478          101 PSLKSLRVQGCSKL-ESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESF--PEGGLPCAKLKE  177 (355)
Q Consensus       101 ~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~~~~~L~~  177 (355)
                      .+|++|++++|... ..+...+..+++|++|.+.+|......+..++.+++|+.|++++|..++..  ......+++|++
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            46777777776522 224455666777777777777633334455666777777777776555421  111233567777


Q ss_pred             EEEccccCcC
Q 018478          178 VVIRWCGRLE  187 (355)
Q Consensus       178 L~l~~~~~~~  187 (355)
                      |++++|..++
T Consensus       126 L~ls~c~~~~  135 (284)
T d2astb2         126 LNLSWCFDFT  135 (284)
T ss_dssp             EECCCCTTCC
T ss_pred             cccccccccc
Confidence            7777765544

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.46  E-value=4.9e-13  Score=109.06  Aligned_cols=94  Identities=17%  Similarity=0.236  Sum_probs=41.8

Q ss_pred             CCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEE
Q 018478          100 PPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVV  179 (355)
Q Consensus       100 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~  179 (355)
                      +++|+.|+++++. ...++ .+..+++|+.|++++|. +..++ .+..+++|+.|++.+| .++.++ .+..+++|+.|+
T Consensus       105 l~~L~~L~l~~~~-~~~~~-~~~~l~~L~~L~l~~n~-l~~~~-~l~~~~~L~~L~l~~n-~l~~l~-~l~~l~~L~~L~  178 (199)
T d2omxa2         105 LTNLTGLTLFNNQ-ITDID-PLKNLTNLNRLELSSNT-ISDIS-ALSGLTSLQQLNFSSN-QVTDLK-PLANLTTLERLD  178 (199)
T ss_dssp             CTTCSEEECCSSC-CCCCG-GGTTCTTCSEEECCSSC-CCCCG-GGTTCTTCSEEECCSS-CCCCCG-GGTTCTTCCEEE
T ss_pred             ccccccccccccc-ccccc-ccchhhhhHHhhhhhhh-hcccc-cccccccccccccccc-cccCCc-cccCCCCCCEEE
Confidence            3455555555444 22221 23445555555555544 33332 2444555555555544 333332 233445555555


Q ss_pred             EccccCcCcccccccCCCCCce
Q 018478          180 IRWCGRLEALPKGLHNLKSLQK  201 (355)
Q Consensus       180 l~~~~~~~~~p~~l~~~~~L~~  201 (355)
                      +++| .+++++ .+.++++|++
T Consensus       179 ls~N-~i~~i~-~l~~L~~L~~  198 (199)
T d2omxa2         179 ISSN-KVSDIS-VLAKLTNLES  198 (199)
T ss_dssp             CCSS-CCCCCG-GGGGCTTCSE
T ss_pred             CCCC-CCCCCc-cccCCCCCCc
Confidence            5553 234432 3444444444

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.46  E-value=5.3e-13  Score=109.83  Aligned_cols=139  Identities=18%  Similarity=0.175  Sum_probs=67.4

Q ss_pred             cccccEEEecCCCccchhccccccchhccccccCCCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccc
Q 018478           64 SYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPS  143 (355)
Q Consensus        64 ~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  143 (355)
                      +++|++|+++++ .++.+             +....+++|+.|++++|. ++.++ .+..+++|+.|++.+|. ...++ 
T Consensus        67 l~~L~~L~L~~n-~i~~l-------------~~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~l~~~~-~~~~~-  128 (210)
T d1h6ta2          67 LPNVTKLFLNGN-KLTDI-------------KPLANLKNLGWLFLDENK-VKDLS-SLKDLKKLKSLSLEHNG-ISDIN-  128 (210)
T ss_dssp             CTTCCEEECCSS-CCCCC-------------GGGTTCTTCCEEECCSSC-CCCGG-GGTTCTTCCEEECTTSC-CCCCG-
T ss_pred             CCCCCEEeCCCc-cccCc-------------cccccCcccccccccccc-ccccc-ccccccccccccccccc-ccccc-
Confidence            555666665554 33333             333334556666665554 44444 24455566666655554 33332 


Q ss_pred             cccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEccccCcCcccccccCCCCCceEEEeecC---cCCCCCCCCccE
Q 018478          144 GLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLTIGKGG---LEEDGLPTNLHS  220 (355)
Q Consensus       144 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~l~~~~---i~~~~~~~~L~~  220 (355)
                      .+..+++++.++++++ .+...+ .+..+++|+.+++++|. ++.++ .+..+++|++|+++.+.   ++....+++|+.
T Consensus       129 ~l~~l~~l~~l~~~~n-~l~~~~-~~~~l~~L~~l~l~~n~-l~~i~-~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~  204 (210)
T d1h6ta2         129 GLVHLPQLESLYLGNN-KITDIT-VLSRLTKLDTLSLEDNQ-ISDIV-PLAGLTKLQNLYLSKNHISDLRALAGLKNLDV  204 (210)
T ss_dssp             GGGGCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSC-CCCCG-GGTTCTTCCEEECCSSCCCBCGGGTTCTTCSE
T ss_pred             cccccccccccccccc-cccccc-ccccccccccccccccc-ccccc-cccCCCCCCEEECCCCCCCCChhhcCCCCCCE
Confidence            3445555555555554 233222 23334556666655542 33332 35555556666555222   222334455555


Q ss_pred             EEec
Q 018478          221 LDIR  224 (355)
Q Consensus       221 L~l~  224 (355)
                      |+++
T Consensus       205 L~Ls  208 (210)
T d1h6ta2         205 LELF  208 (210)
T ss_dssp             EEEE
T ss_pred             EEcc
Confidence            5554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.9e-15  Score=129.60  Aligned_cols=179  Identities=15%  Similarity=0.115  Sum_probs=119.4

Q ss_pred             cCCCCCcEEEeeccCCcCc-ccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEccccCcCcc--cccccCCCC
Q 018478          122 DNSTSLETIHIFYCENMKI-LPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEAL--PKGLHNLKS  198 (355)
Q Consensus       122 ~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~--p~~l~~~~~  198 (355)
                      ....+|++|++++|..... +...+..+++|+.|++.+|..-...+..+..+++|+.|++++|..+++.  ......+++
T Consensus        43 ~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~  122 (284)
T d2astb2          43 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR  122 (284)
T ss_dssp             CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred             ccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHh
Confidence            3467899999998763222 4455778899999999988432233344556789999999998877642  223457889


Q ss_pred             CceEEEee-cCcCCC-------CCCCCccEEEecCCc-chhhhhhhhcccCCCCCccceeEecccCCcccccC-cccccc
Q 018478          199 LQKLTIGK-GGLEED-------GLPTNLHSLDIRGNM-EIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFP-PEDIRM  268 (355)
Q Consensus       199 L~~L~l~~-~~i~~~-------~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~  268 (355)
                      |++|+++. ..+.+.       ..+++|+.|++++|. .+++......  +..+++|++|++++ |..++.-. ..+   
T Consensus       123 L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l--~~~~~~L~~L~L~~-~~~itd~~~~~l---  196 (284)
T d2astb2         123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL--VRRCPNLVHLDLSD-SVMLKNDCFQEF---  196 (284)
T ss_dssp             CCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH--HHHCTTCSEEECTT-CTTCCGGGGGGG---
T ss_pred             ccccccccccccccccchhhhcccccccchhhhccccccccccccccc--cccccccccccccc-ccCCCchhhhhh---
Confidence            99998873 333321       235788999998864 3333222112  45678899999988 76654322 222   


Q ss_pred             CCCCCCCCccceEEeccCCCcccc-cccCCCCCCccEEeeCCC
Q 018478          269 GTTLPLPTSLTSLAIFSFPNLERL-SSSIVDLQNLTSLYLVGC  310 (355)
Q Consensus       269 ~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~~  310 (355)
                          ...++|++|++++|+.++.- ...+..+++|++|++++|
T Consensus       197 ----~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         197 ----FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             ----GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ----cccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence                34578999999988777632 234567888999998887

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.44  E-value=6.1e-13  Score=108.49  Aligned_cols=161  Identities=18%  Similarity=0.198  Sum_probs=101.2

Q ss_pred             CCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEccccCcCcccccccCCCCCceEE
Q 018478          124 STSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLT  203 (355)
Q Consensus       124 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~  203 (355)
                      +.++++|++++|. +..+. .+..+++|+.|++++| .++.++. +..+++|+.|++++|. ...++ .+..+++|+.| 
T Consensus        39 l~~l~~L~l~~~~-i~~l~-~l~~l~nL~~L~Ls~N-~l~~~~~-l~~l~~L~~L~l~~n~-~~~~~-~l~~l~~L~~L-  111 (199)
T d2omxa2          39 LDQVTTLQADRLG-IKSID-GVEYLNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNNQ-IADIT-PLANLTNLTGL-  111 (199)
T ss_dssp             HTTCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCCCG-GGTTCTTCSEE-
T ss_pred             hcCCCEEECCCCC-CCCcc-ccccCCCcCcCccccc-cccCccc-ccCCcccccccccccc-ccccc-ccccccccccc-
Confidence            5788888888877 55553 4677888888888886 5665543 6667888888888754 33333 35555555555 


Q ss_pred             EeecCcCCCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEe
Q 018478          204 IGKGGLEEDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAI  283 (355)
Q Consensus       204 l~~~~i~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l  283 (355)
                                        ++++|.... ...     +..+++|+.|++++  +.+..++. +       ...++|+.|++
T Consensus       112 ------------------~l~~~~~~~-~~~-----~~~l~~L~~L~l~~--n~l~~~~~-l-------~~~~~L~~L~l  157 (199)
T d2omxa2         112 ------------------TLFNNQITD-IDP-----LKNLTNLNRLELSS--NTISDISA-L-------SGLTSLQQLNF  157 (199)
T ss_dssp             ------------------ECCSSCCCC-CGG-----GTTCTTCSEEECCS--SCCCCCGG-G-------TTCTTCSEEEC
T ss_pred             ------------------ccccccccc-ccc-----cchhhhhHHhhhhh--hhhccccc-c-------ccccccccccc
Confidence                              444444322 111     55667777777776  34444432 2       35567777777


Q ss_pred             ccCCCcccccccCCCCCCccEEeeCCCCCCcccCCCCCCCCccEE
Q 018478          284 FSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPEKGLPSSLLEL  328 (355)
Q Consensus       284 ~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L  328 (355)
                      .+ +.++.+++ +.++++|++|++++| ++++++.-+-+++|++|
T Consensus       158 ~~-n~l~~l~~-l~~l~~L~~L~ls~N-~i~~i~~l~~L~~L~~L  199 (199)
T d2omxa2         158 SS-NQVTDLKP-LANLTTLERLDISSN-KVSDISVLAKLTNLESL  199 (199)
T ss_dssp             CS-SCCCCCGG-GTTCTTCCEEECCSS-CCCCCGGGGGCTTCSEE
T ss_pred             cc-ccccCCcc-ccCCCCCCEEECCCC-CCCCCccccCCCCCCcC
Confidence            77 46666653 567778888888877 67776542225666654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.44  E-value=5.1e-13  Score=109.93  Aligned_cols=164  Identities=16%  Similarity=0.183  Sum_probs=97.8

Q ss_pred             CCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEccccCcCcccccccCCCCCceEE
Q 018478          124 STSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWCGRLEALPKGLHNLKSLQKLT  203 (355)
Q Consensus       124 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~l~~~~~L~~L~  203 (355)
                      +.+|++|++++|. +..++ .+..+++|+.|++++| .++.++. +..+++|+.|++++| .++.++ .+..+++|+.|+
T Consensus        45 L~~L~~L~l~~~~-i~~l~-~l~~l~~L~~L~L~~n-~i~~l~~-~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~  118 (210)
T d1h6ta2          45 LNSIDQIIANNSD-IKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDEN-KVKDLS-SLKDLKKLKSLS  118 (210)
T ss_dssp             HHTCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCGG-GGTTCTTCCEEE
T ss_pred             hcCccEEECcCCC-CCCch-hHhhCCCCCEEeCCCc-cccCccc-cccCccccccccccc-cccccc-cccccccccccc
Confidence            5678888888876 55554 4677888888888887 5666653 456778888888875 455554 456666666665


Q ss_pred             EeecCcCCCCCCCCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEe
Q 018478          204 IGKGGLEEDGLPTNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAI  283 (355)
Q Consensus       204 l~~~~i~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l  283 (355)
                      +.                   +|.... ...     +..+++++.+++++  +.+...+. .       ..+++|+.+++
T Consensus       119 l~-------------------~~~~~~-~~~-----l~~l~~l~~l~~~~--n~l~~~~~-~-------~~l~~L~~l~l  163 (210)
T d1h6ta2         119 LE-------------------HNGISD-ING-----LVHLPQLESLYLGN--NKITDITV-L-------SRLTKLDTLSL  163 (210)
T ss_dssp             CT-------------------TSCCCC-CGG-----GGGCTTCCEEECCS--SCCCCCGG-G-------GGCTTCSEEEC
T ss_pred             cc-------------------cccccc-ccc-----cccccccccccccc--cccccccc-c-------ccccccccccc
Confidence            54                   433211 111     44455666666655  33333322 1       23456666666


Q ss_pred             ccCCCcccccccCCCCCCccEEeeCCCCCCcccCCCCCCCCccEEEec
Q 018478          284 FSFPNLERLSSSIVDLQNLTSLYLVGCPKLKYFPEKGLPSSLLELWIG  331 (355)
Q Consensus       284 ~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~  331 (355)
                      ++ +.++.++. +..+++|++|++++| ++++++.-.-+++|++|+++
T Consensus       164 ~~-n~l~~i~~-l~~l~~L~~L~Ls~N-~i~~l~~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         164 ED-NQISDIVP-LAGLTKLQNLYLSKN-HISDLRALAGLKNLDVLELF  208 (210)
T ss_dssp             CS-SCCCCCGG-GTTCTTCCEEECCSS-CCCBCGGGTTCTTCSEEEEE
T ss_pred             cc-cccccccc-ccCCCCCCEEECCCC-CCCCChhhcCCCCCCEEEcc
Confidence            66 35555543 456666777777666 56666543335667776664

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.12  E-value=9.4e-11  Score=87.37  Aligned_cols=78  Identities=18%  Similarity=0.234  Sum_probs=33.3

Q ss_pred             CcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCC--CCCCCCCcceE
Q 018478          101 PSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPE--GGLPCAKLKEV  178 (355)
Q Consensus       101 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~~L~~L  178 (355)
                      ++|++|++++|. ++.+|+.++.+++|+.|++++|. ++.++ .+..+++|+.+++++| .+..++.  .+..+++|+.+
T Consensus        20 ~~L~~L~ls~N~-l~~lp~~~~~l~~L~~L~l~~N~-i~~l~-~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~~~~L~~L   95 (124)
T d1dcea3          20 LLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLL   95 (124)
T ss_dssp             TTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEE
T ss_pred             CCCCEEECCCCc-cCcchhhhhhhhccccccccccc-ccccC-ccccccccCeEECCCC-ccCCCCCchhhcCCCCCCEE
Confidence            344444444443 44444444444444444444443 33333 2444444444444443 3333321  22334444444


Q ss_pred             EEcc
Q 018478          179 VIRW  182 (355)
Q Consensus       179 ~l~~  182 (355)
                      ++++
T Consensus        96 ~l~~   99 (124)
T d1dcea3          96 NLQG   99 (124)
T ss_dssp             ECTT
T ss_pred             ECCC
Confidence            4444

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.11  E-value=8.1e-11  Score=87.73  Aligned_cols=101  Identities=20%  Similarity=0.260  Sum_probs=81.0

Q ss_pred             cEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEccc
Q 018478          104 KSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIRWC  183 (355)
Q Consensus       104 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~  183 (355)
                      +.|++++|. ++.++ .++.+++|++|++++|. +..+|..++.+++|+.|++++| .++.+| .+..+++|+.+++++|
T Consensus         1 R~L~Ls~n~-l~~l~-~l~~l~~L~~L~ls~N~-l~~lp~~~~~l~~L~~L~l~~N-~i~~l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKD-LTVLC-HLEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSC-CSSCC-CGGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCC-CCCCc-ccccCCCCCEEECCCCc-cCcchhhhhhhhcccccccccc-cccccC-ccccccccCeEECCCC
Confidence            578899887 77776 47788999999999887 7788888889999999999987 677775 4777899999999985


Q ss_pred             cCcCccc--ccccCCCCCceEEEeecCcC
Q 018478          184 GRLEALP--KGLHNLKSLQKLTIGKGGLE  210 (355)
Q Consensus       184 ~~~~~~p--~~l~~~~~L~~L~l~~~~i~  210 (355)
                       .++.++  ..+..+++|++|+++.+.+.
T Consensus        76 -~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          76 -RLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             -CCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             -ccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence             455554  46788899999999855544

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=7.8e-11  Score=92.22  Aligned_cols=120  Identities=12%  Similarity=0.083  Sum_probs=64.4

Q ss_pred             cccccEEEecCCCccchhccccccchhccccccC-CCCCcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCccc
Q 018478           64 SYLLEELCISSCRSLTSIFSKNELSATLESLEVG-NLPPSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILP  142 (355)
Q Consensus        64 ~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  142 (355)
                      ..++++|+++++ .++.+             +.. ..+++|+.|++++|. +..++ .+..+++|++|++++|. +..++
T Consensus        17 ~~~lr~L~L~~n-~I~~i-------------~~~~~~l~~L~~L~Ls~N~-i~~l~-~~~~l~~L~~L~ls~N~-i~~l~   79 (162)
T d1a9na_          17 AVRDRELDLRGY-KIPVI-------------ENLGATLDQFDAIDFSDNE-IRKLD-GFPLLRRLKTLLVNNNR-ICRIG   79 (162)
T ss_dssp             TTSCEEEECTTS-CCCSC-------------CCGGGGTTCCSEEECCSSC-CCEEC-CCCCCSSCCEEECCSSC-CCEEC
T ss_pred             cCcCcEEECCCC-CCCcc-------------CccccccccCCEEECCCCC-CCccC-CcccCcchhhhhccccc-ccCCC
Confidence            455666666654 33444             221 233566666666665 55553 35566666666666666 44444


Q ss_pred             cc-ccCCCCCceEeccccCCCcCCCC--CCCCCCCcceEEEccccCcCcccc----cccCCCCCceE
Q 018478          143 SG-LHNLRQLQEISIEGCGNLESFPE--GGLPCAKLKEVVIRWCGRLEALPK----GLHNLKSLQKL  202 (355)
Q Consensus       143 ~~-~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~~L~~L~l~~~~~~~~~p~----~l~~~~~L~~L  202 (355)
                      .. +..+++|+.|++++| .+..+++  .+..+++|+.+++++|+ ++..|.    .+..+++|+.|
T Consensus        80 ~~~~~~l~~L~~L~L~~N-~i~~~~~l~~l~~l~~L~~L~l~~N~-i~~~~~~r~~~i~~lp~L~~L  144 (162)
T d1a9na_          80 EGLDQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVL  144 (162)
T ss_dssp             SCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEE
T ss_pred             ccccccccccccceeccc-cccccccccccccccccchhhcCCCc-cccccchHHHHHHHCCCcCee
Confidence            32 345666666666665 4444432  34445666666666643 333332    34455555554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=1.7e-10  Score=90.22  Aligned_cols=79  Identities=18%  Similarity=0.249  Sum_probs=50.3

Q ss_pred             CcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCCCC-CCCCCcceEE
Q 018478          101 PSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPEGG-LPCAKLKEVV  179 (355)
Q Consensus       101 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~  179 (355)
                      .+++.|++++|. ++.++..+..+++|+.|++++|. +..++ .+..+++|+.|++++| .+..++..+ ..+++|++|+
T Consensus        18 ~~lr~L~L~~n~-I~~i~~~~~~l~~L~~L~Ls~N~-i~~l~-~~~~l~~L~~L~ls~N-~i~~l~~~~~~~l~~L~~L~   93 (162)
T d1a9na_          18 VRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNE-IRKLD-GFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTELI   93 (162)
T ss_dssp             TSCEEEECTTSC-CCSCCCGGGGTTCCSEEECCSSC-CCEEC-CCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCEEE
T ss_pred             CcCcEEECCCCC-CCccCccccccccCCEEECCCCC-CCccC-CcccCcchhhhhcccc-cccCCCccccccccccccce
Confidence            467777777766 66665544556777777777765 55553 4566777777777776 455555443 3366777777


Q ss_pred             Eccc
Q 018478          180 IRWC  183 (355)
Q Consensus       180 l~~~  183 (355)
                      +++|
T Consensus        94 L~~N   97 (162)
T d1a9na_          94 LTNN   97 (162)
T ss_dssp             CCSC
T ss_pred             eccc
Confidence            7764

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.98  E-value=1.2e-09  Score=87.87  Aligned_cols=103  Identities=15%  Similarity=0.169  Sum_probs=52.0

Q ss_pred             CCcccEEEEccCcchh-ch-hhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCCC-CCCCCCCcc
Q 018478          100 PPSLKSLRVQGCSKLE-SI-AETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFPE-GGLPCAKLK  176 (355)
Q Consensus       100 ~~~L~~L~l~~~~~~~-~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~  176 (355)
                      ++++++|++++|. +. .+ +..|..+++|++|++++|......+..+..+++|+.|++++| .++.+|. .|..+++|+
T Consensus        28 p~~l~~L~Ls~N~-i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N-~l~~l~~~~F~~l~~L~  105 (192)
T d1w8aa_          28 PLHTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQLK  105 (192)
T ss_dssp             CTTCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSSTTCTTCC
T ss_pred             CCCCCEEEeCCCC-CcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc-cccccCHHHHhCCCccc
Confidence            3455556655555 32 22 233445556666666555533333344555555666666554 3444432 344455666


Q ss_pred             eEEEccccCcCccc-ccccCCCCCceEEEe
Q 018478          177 EVVIRWCGRLEALP-KGLHNLKSLQKLTIG  205 (355)
Q Consensus       177 ~L~l~~~~~~~~~p-~~l~~~~~L~~L~l~  205 (355)
                      +|++++|. ++.++ .+|..+++|++|+++
T Consensus       106 ~L~L~~N~-l~~i~~~~f~~l~~L~~l~L~  134 (192)
T d1w8aa_         106 TLNLYDNQ-ISCVMPGSFEHLNSLTSLNLA  134 (192)
T ss_dssp             EEECCSSC-CCEECTTSSTTCTTCCEEECT
T ss_pred             ccccCCcc-ccccCHHHhcCCccccccccc
Confidence            66666543 33332 345555666666554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.92  E-value=2.1e-09  Score=86.48  Aligned_cols=123  Identities=14%  Similarity=0.097  Sum_probs=91.9

Q ss_pred             ccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcc-cccccCCCCCceEeccccCCCcCCCCCCCCCCCcceEEEc
Q 018478          103 LKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKIL-PSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEVVIR  181 (355)
Q Consensus       103 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~  181 (355)
                      .+.++.+++. ++.+|..+  .+++++|++++|.....+ +..+..+++|+.|+++++......+..+..+++|++|+++
T Consensus        10 ~~~v~Cs~~~-L~~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          10 GTTVDCTGRG-LKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSC-CSSCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEEeCCC-cCccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            4567777765 77888766  378999999998843434 3567889999999999874434445667778999999999


Q ss_pred             cccCcCccc-ccccCCCCCceEEEeecCc---CC--CCCCCCccEEEecCCcch
Q 018478          182 WCGRLEALP-KGLHNLKSLQKLTIGKGGL---EE--DGLPTNLHSLDIRGNMEI  229 (355)
Q Consensus       182 ~~~~~~~~p-~~l~~~~~L~~L~l~~~~i---~~--~~~~~~L~~L~l~~~~~~  229 (355)
                      +|. ++.+| .+|.++++|++|+++.+.+   +.  ....++|++|++++|...
T Consensus        87 ~N~-l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          87 ENK-IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             SCC-CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             ccc-ccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            964 55554 5788999999999994443   33  345689999999988643

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=7.9e-11  Score=107.53  Aligned_cols=114  Identities=20%  Similarity=0.319  Sum_probs=59.4

Q ss_pred             CCccEEeecccccCcccccCc-cC--CCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhc
Q 018478            6 SSLEILEIWSCRSLTYLAAVQ-LP--RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIF   82 (355)
Q Consensus         6 ~~L~~L~l~~~~~l~~l~~~~-~~--~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~   82 (355)
                      ++|++|+++ |++++...-.. ++  +++++|++.+|. +.......-       ...+..+++|++|+++++. ++.. 
T Consensus         2 ~~l~~ld~~-~~~i~~~~~~~l~~~l~~l~~L~L~~~~-i~~~~~~~l-------~~~L~~~~~L~~LdLs~N~-i~~~-   70 (460)
T d1z7xw1           2 LDIQSLDIQ-CEELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDI-------SSALRVNPALAELNLRSNE-LGDV-   70 (460)
T ss_dssp             EEEEEEEEE-SCCCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHH-------HHHHHTCTTCCEEECTTCC-CHHH-
T ss_pred             CCCCEEEee-CCcCChHHHHHHHHhCCCCCEEEeCCCC-CCHHHHHHH-------HHHHhcCCCCCEEECcCCc-CChH-
Confidence            367888886 66665432122 22  788888888874 432111000       0012346778888887653 3321 


Q ss_pred             cccccchhccccccCCCCCcccEEEEccCcchh-----chhhhccCCCCCcEEEeeccC
Q 018478           83 SKNELSATLESLEVGNLPPSLKSLRVQGCSKLE-----SIAETLDNSTSLETIHIFYCE  136 (355)
Q Consensus        83 ~~n~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~l~~L~~L~l~~~~  136 (355)
                         +......  .......+|++|++++|. ++     .++..+..+++|++|++++|.
T Consensus        71 ---~~~~l~~--~l~~~~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          71 ---GVHCVLQ--GLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             ---HHHHHHH--TTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             ---HHHHHHH--HHhcCCCCCCEEECCCCC-ccccccccccchhhcccccccccccccc
Confidence               0000000  000112467777777775 43     244556667777777777665

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.78  E-value=2e-11  Score=99.11  Aligned_cols=80  Identities=16%  Similarity=0.258  Sum_probs=41.2

Q ss_pred             CcccEEEEccCcchhchhhhccCCCCCcEEEeeccCCcCcccccccCCCCCceEeccccCCCcCCC--CCCCCCCCcceE
Q 018478          101 PSLKSLRVQGCSKLESIAETLDNSTSLETIHIFYCENMKILPSGLHNLRQLQEISIEGCGNLESFP--EGGLPCAKLKEV  178 (355)
Q Consensus       101 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~~~~~L~~L  178 (355)
                      ++|+.|++++|. ++.++.....+++|++|++++|. ++.++ .+..+++|+.|++++| .++.++  ..+..+++|+.|
T Consensus        70 ~~L~~L~Ls~N~-i~~i~~~~~~~~~L~~L~l~~N~-i~~l~-~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L  145 (198)
T d1m9la_          70 ENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQ-IASLS-GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDL  145 (198)
T ss_dssp             TTCCEEECCEEE-ECSCSSHHHHHHHCCEEECSEEE-CCCHH-HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEE
T ss_pred             ccccChhhcccc-ccccccccccccccccccccccc-ccccc-cccccccccccccccc-hhccccccccccCCCcccee
Confidence            456666666554 44444333334456666666554 44442 2445556666666554 333333  123445566666


Q ss_pred             EEcccc
Q 018478          179 VIRWCG  184 (355)
Q Consensus       179 ~l~~~~  184 (355)
                      ++++|+
T Consensus       146 ~L~~N~  151 (198)
T d1m9la_         146 LLAGNP  151 (198)
T ss_dssp             EECSSH
T ss_pred             ecCCCc
Confidence            666543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=6e-08  Score=74.83  Aligned_cols=106  Identities=23%  Similarity=0.200  Sum_probs=72.8

Q ss_pred             CCccEEEecCCcchhhhhhhhcccCCCCCccceeEecccCCcccccCccccccCCCCCCCCccceEEeccCCCccccc-c
Q 018478          216 TNLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEGCDDDMVSFPPEDIRMGTTLPLPTSLTSLAIFSFPNLERLS-S  294 (355)
Q Consensus       216 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~  294 (355)
                      ...+.++..++...+ .+.  .  +.++++|++|++++ .+.++.++.+.+      ..+++|+.|++++ +.++.++ .
T Consensus         8 ~~~~~l~c~~~~~~~-~p~--~--l~~l~~l~~L~l~~-n~~l~~i~~~~f------~~l~~L~~L~Ls~-N~l~~i~~~   74 (156)
T d2ifga3           8 HGSSGLRCTRDGALD-SLH--H--LPGAENLTELYIEN-QQHLQHLELRDL------RGLGELRNLTIVK-SGLRFVAPD   74 (156)
T ss_dssp             SSSSCEECCSSCCCT-TTT--T--SCSCSCCSEEECCS-CSSCCEECGGGS------CSCCCCSEEECCS-SCCCEECTT
T ss_pred             CCCCeEEecCCCCcc-Ccc--c--ccCccccCeeecCC-CccccccCchhh------ccccccCcceeec-cccCCcccc
Confidence            344556666544332 222  1  55677888888876 456777776543      5677888888888 6777774 4


Q ss_pred             cCCCCCCccEEeeCCCCCCcccCCCCC-CCCccEEEecCCch
Q 018478          295 SIVDLQNLTSLYLVGCPKLKYFPEKGL-PSSLLELWIGGCPL  335 (355)
Q Consensus       295 ~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~L~~L~l~~c~~  335 (355)
                      .+..+++|++|++++| +++.++...+ ..+|++|++.++|.
T Consensus        75 ~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          75 AFHFTPRLSRLNLSFN-ALESLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             GGGSCSCCCEEECCSS-CCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             cccccccccceeccCC-CCcccChhhhccccccccccCCCcc
Confidence            4678888888888887 7888877655 45788888887653

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.64  E-value=6.1e-10  Score=90.07  Aligned_cols=120  Identities=16%  Similarity=0.203  Sum_probs=84.4

Q ss_pred             CCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccccchhccccccC-CCCCcccEEE
Q 018478           29 RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEVG-NLPPSLKSLR  107 (355)
Q Consensus        29 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~-~~~~~L~~L~  107 (355)
                      ++|++|++++ +.++.++.             +..+++|+.|+++++ .++.+             +.. ..+++|+.|+
T Consensus        48 ~~L~~L~Ls~-n~I~~i~~-------------l~~l~~L~~L~Ls~N-~i~~i-------------~~~~~~~~~L~~L~   99 (198)
T d1m9la_          48 KACKHLALST-NNIEKISS-------------LSGMENLRILSLGRN-LIKKI-------------ENLDAVADTLEELW   99 (198)
T ss_dssp             TTCCEEECSE-EEESCCCC-------------HHHHTTCCEEECCEE-EECSC-------------SSHHHHHHHCCEEE
T ss_pred             cccceeECcc-cCCCCccc-------------ccCCccccChhhccc-ccccc-------------cccccccccccccc
Confidence            8899999998 55777753             244888999999876 45555             322 2345799999


Q ss_pred             EccCcchhchhhhccCCCCCcEEEeeccCCcCccc--ccccCCCCCceEeccccCCCcCCCCC----------CCCCCCc
Q 018478          108 VQGCSKLESIAETLDNSTSLETIHIFYCENMKILP--SGLHNLRQLQEISIEGCGNLESFPEG----------GLPCAKL  175 (355)
Q Consensus       108 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~l~~~~~~----------~~~~~~L  175 (355)
                      +++|. ++.++ .+..+++|+.|++++|. ++.++  ..+..+++|+.|++++|+.....+..          +..+++|
T Consensus       100 l~~N~-i~~l~-~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L  176 (198)
T d1m9la_         100 ISYNQ-IASLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNL  176 (198)
T ss_dssp             CSEEE-CCCHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSC
T ss_pred             ccccc-ccccc-cccccccccccccccch-hccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCc
Confidence            99886 77665 36668899999999887 65554  35788999999999987422222211          3346788


Q ss_pred             ceEE
Q 018478          176 KEVV  179 (355)
Q Consensus       176 ~~L~  179 (355)
                      +.|+
T Consensus       177 ~~LD  180 (198)
T d1m9la_         177 KKLD  180 (198)
T ss_dssp             CEES
T ss_pred             CEeC
Confidence            8875

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.57  E-value=6.3e-09  Score=91.50  Aligned_cols=153  Identities=14%  Similarity=0.145  Sum_probs=73.8

Q ss_pred             CCcccEEEEccCcch----------hchhhhccCCCCCcEEEeeccCCcCc----ccccccCCCCCceEeccccCCCcC-
Q 018478          100 PPSLKSLRVQGCSKL----------ESIAETLDNSTSLETIHIFYCENMKI----LPSGLHNLRQLQEISIEGCGNLES-  164 (355)
Q Consensus       100 ~~~L~~L~l~~~~~~----------~~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~l~~-  164 (355)
                      .++|+.++++++...          ..+...+..+++|++|++++|..-..    +...+...++|+.|++++|. +.. 
T Consensus        58 ~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~-l~~~  136 (344)
T d2ca6a1          58 KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQ  136 (344)
T ss_dssp             CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHH
T ss_pred             CCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccccchhhhhcccccchheeccccc-cccc
Confidence            356666666654311          11223345566777777776652221    23334445667777776652 211 


Q ss_pred             ----CCC---------CCCCCCCcceEEEccccCc----CcccccccCCCCCceEEEeecCcCC----------CCCCCC
Q 018478          165 ----FPE---------GGLPCAKLKEVVIRWCGRL----EALPKGLHNLKSLQKLTIGKGGLEE----------DGLPTN  217 (355)
Q Consensus       165 ----~~~---------~~~~~~~L~~L~l~~~~~~----~~~p~~l~~~~~L~~L~l~~~~i~~----------~~~~~~  217 (355)
                          +..         .....+.|+.+.++++..-    ..+...+...++|+.|+++.+.+..          ....++
T Consensus       137 ~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~  216 (344)
T d2ca6a1         137 AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQE  216 (344)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTT
T ss_pred             ccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhh
Confidence                000         0112346666766664321    1122334555666666665332221          123456


Q ss_pred             ccEEEecCCcchhhhhhhhcccCCCCCccceeEecc
Q 018478          218 LHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEG  253 (355)
Q Consensus       218 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  253 (355)
                      |+.|++++|.............+..+++|++|++++
T Consensus       217 L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~  252 (344)
T d2ca6a1         217 LKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND  252 (344)
T ss_dssp             CCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTT
T ss_pred             hcccccccccccccccccccccccccccchhhhhhc
Confidence            667777766533322221212255666777777776

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=1.8e-07  Score=72.03  Aligned_cols=81  Identities=19%  Similarity=0.287  Sum_probs=38.4

Q ss_pred             CcccEEEEccCcchhchh-hhccCCCCCcEEEeeccCCcCcc-cccccCCCCCceEeccccCCCcCCCCCCCCCCCcceE
Q 018478          101 PSLKSLRVQGCSKLESIA-ETLDNSTSLETIHIFYCENMKIL-PSGLHNLRQLQEISIEGCGNLESFPEGGLPCAKLKEV  178 (355)
Q Consensus       101 ~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L  178 (355)
                      ++|+.|++.++..++.++ ..|..+++|+.|++++|. ++.+ +..+..+++|+.|++++| .++.+|.......+|+.|
T Consensus        31 ~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~~~l~~L  108 (156)
T d2ifga3          31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTVQGLSLQEL  108 (156)
T ss_dssp             SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSS-CCSCCCSTTTCSCCCCEE
T ss_pred             cccCeeecCCCccccccCchhhccccccCcceeeccc-cCCcccccccccccccceeccCC-CCcccChhhhcccccccc
Confidence            445555554443344443 234445555555555544 3333 233445555555555554 344444443333345555


Q ss_pred             EEccc
Q 018478          179 VIRWC  183 (355)
Q Consensus       179 ~l~~~  183 (355)
                      ++++|
T Consensus       109 ~L~~N  113 (156)
T d2ifga3         109 VLSGN  113 (156)
T ss_dssp             ECCSS
T ss_pred             ccCCC
Confidence            55543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=7.6e-09  Score=94.00  Aligned_cols=111  Identities=22%  Similarity=0.330  Sum_probs=71.8

Q ss_pred             CCcceEecccCccccccccccCcCCCCCCCccccccccccEEEecCCCccchhccccccchhccccccCCCCCcccEEEE
Q 018478           29 RSLKRLDIQCCSNIRTLTMEEGIQSSSSSSSRRYTSYLLEELCISSCRSLTSIFSKNELSATLESLEVGNLPPSLKSLRV  108 (355)
Q Consensus        29 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~n~~~~~~~~~~~~~~~~~L~~L~l  108 (355)
                      ++|++|++++ +++.......          .+..+++++.|+|.+|. ++.. .-.++...      ....++|+.|++
T Consensus         2 ~~l~~ld~~~-~~i~~~~~~~----------l~~~l~~l~~L~L~~~~-i~~~-~~~~l~~~------L~~~~~L~~LdL   62 (460)
T d1z7xw1           2 LDIQSLDIQC-EELSDARWAE----------LLPLLQQCQVVRLDDCG-LTEA-RCKDISSA------LRVNPALAELNL   62 (460)
T ss_dssp             EEEEEEEEES-CCCCHHHHHH----------HHHHHTTCSEEEEESSC-CCHH-HHHHHHHH------HHTCTTCCEEEC
T ss_pred             CCCCEEEeeC-CcCChHHHHH----------HHHhCCCCCEEEeCCCC-CCHH-HHHHHHHH------HhcCCCCCEEEC
Confidence            4689999976 7776432111          02338899999999984 4432 00011111      123478999999


Q ss_pred             ccCcchhc-----hhhhcc-CCCCCcEEEeeccCCcCc-----ccccccCCCCCceEeccccC
Q 018478          109 QGCSKLES-----IAETLD-NSTSLETIHIFYCENMKI-----LPSGLHNLRQLQEISIEGCG  160 (355)
Q Consensus       109 ~~~~~~~~-----~~~~~~-~l~~L~~L~l~~~~~~~~-----~~~~~~~l~~L~~L~l~~~~  160 (355)
                      ++|. ++.     +...+. ...+|++|++++|. ++.     ++..+..+++|+.|++++|.
T Consensus        63 s~N~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          63 RSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             TTCC-CHHHHHHHHHHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             cCCc-CChHHHHHHHHHHhcCCCCCCEEECCCCC-ccccccccccchhhcccccccccccccc
Confidence            9987 542     333333 23589999999998 543     35567788999999998863

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.37  E-value=2.5e-08  Score=87.53  Aligned_cols=223  Identities=14%  Similarity=0.133  Sum_probs=141.6

Q ss_pred             CCcccEEEEccCcch----hchhhhccCCCCCcEEEeeccCCcC----------cccccccCCCCCceEeccccCCCcC-
Q 018478          100 PPSLKSLRVQGCSKL----ESIAETLDNSTSLETIHIFYCENMK----------ILPSGLHNLRQLQEISIEGCGNLES-  164 (355)
Q Consensus       100 ~~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~~~----------~~~~~~~~l~~L~~L~l~~~~~l~~-  164 (355)
                      ..+++.|++++|...    ..+...+...++|+.+.+.++..-.          .+...+..+++|+.|++++|. +.. 
T Consensus        30 ~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~  108 (344)
T d2ca6a1          30 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA-FGPT  108 (344)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC-CCTT
T ss_pred             CCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccc-cccc
Confidence            367999999998621    2345567778999999998764211          123345667899999999873 332 


Q ss_pred             ----CCCCCCCCCCcceEEEccccCcCc----ccc---------cccCCCCCceEEEeecCcCCCC---------CCCCc
Q 018478          165 ----FPEGGLPCAKLKEVVIRWCGRLEA----LPK---------GLHNLKSLQKLTIGKGGLEEDG---------LPTNL  218 (355)
Q Consensus       165 ----~~~~~~~~~~L~~L~l~~~~~~~~----~p~---------~l~~~~~L~~L~l~~~~i~~~~---------~~~~L  218 (355)
                          +...+..+++|++|++++|..-..    +..         .....+.|+.+.++.+.+...+         ..+.|
T Consensus       109 ~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L  188 (344)
T d2ca6a1         109 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL  188 (344)
T ss_dssp             THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred             cccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhh
Confidence                222333468999999998753110    111         1234668889988755554322         34789


Q ss_pred             cEEEecCCcchhhhhhh-hcccCCCCCccceeEecccCCcccc-----cCccccccCCCCCCCCccceEEeccCCCccc-
Q 018478          219 HSLDIRGNMEIWKSMIE-WGQGFHRFSSLRELRIEGCDDDMVS-----FPPEDIRMGTTLPLPTSLTSLAIFSFPNLER-  291 (355)
Q Consensus       219 ~~L~l~~~~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-  291 (355)
                      +.|++++|......... ..+.+..+++|++|++++ + .+..     +...+       ...++|++|++++|. +.. 
T Consensus       189 ~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~-N-~i~~~g~~~L~~~l-------~~~~~L~~L~Ls~n~-i~~~  258 (344)
T d2ca6a1         189 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQD-N-TFTHLGSSALAIAL-------KSWPNLRELGLNDCL-LSAR  258 (344)
T ss_dssp             CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCS-S-CCHHHHHHHHHHHG-------GGCTTCCEEECTTCC-CCHH
T ss_pred             cccccccccccccccccchhhhhcchhhhccccccc-c-cccccccccccccc-------cccccchhhhhhcCc-cCch
Confidence            99999998754432111 122266789999999998 3 3322     22222       356789999999963 442 


Q ss_pred             ----ccccC--CCCCCccEEeeCCCCCCcccCCCC-------CCCCccEEEecCCc
Q 018478          292 ----LSSSI--VDLQNLTSLYLVGCPKLKYFPEKG-------LPSSLLELWIGGCP  334 (355)
Q Consensus       292 ----l~~~~--~~~~~L~~L~l~~~~~l~~~~~~~-------~~~~L~~L~l~~c~  334 (355)
                          +...+  ...+.|++|++++| +++.-....       -.++|++|++.++.
T Consensus       259 g~~~l~~~l~~~~~~~L~~L~ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~  313 (344)
T d2ca6a1         259 GAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNR  313 (344)
T ss_dssp             HHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             hhHHHHHHhhhccCCCCCEEECCCC-cCChHHHHHHHHHHHccCCCCCEEECCCCc
Confidence                22222  23567999999998 566522111       15789999998865

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=5.4e-06  Score=63.88  Aligned_cols=80  Identities=18%  Similarity=0.172  Sum_probs=44.8

Q ss_pred             ccCCCCCcEEEeeccCCcCcc---cccccCCCCCceEeccccCCCcCCCC-CCCCCCCcceEEEccccCcCccc------
Q 018478          121 LDNSTSLETIHIFYCENMKIL---PSGLHNLRQLQEISIEGCGNLESFPE-GGLPCAKLKEVVIRWCGRLEALP------  190 (355)
Q Consensus       121 ~~~l~~L~~L~l~~~~~~~~~---~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~p------  190 (355)
                      ...+++|++|++++|. ++.+   +..+..+++|+.|++++| .++.+++ ......+|+.+++.+|+......      
T Consensus        61 ~~~~~~L~~L~Ls~N~-i~~l~~~~~~~~~l~~L~~L~Ls~N-~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~  138 (162)
T d1koha1          61 EENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYI  138 (162)
T ss_dssp             HHHCTTCCCCCCCSSC-CCCCSGGGTHHHHSTTCCCCCCTTS-CCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHH
T ss_pred             HHhCCCCCEeeCCCcc-ccCCchhHHHHhhCCcccccccccC-ccccchhhhhhhccccceeecCCCCcCcCcccchhHH
Confidence            3456777777777766 4443   233455777777777775 5555543 11223457777777764432221      


Q ss_pred             -ccccCCCCCceE
Q 018478          191 -KGLHNLKSLQKL  202 (355)
Q Consensus       191 -~~l~~~~~L~~L  202 (355)
                       ..+..+++|+.|
T Consensus       139 ~~i~~~~P~L~~L  151 (162)
T d1koha1         139 SAIRERFPKLLRL  151 (162)
T ss_dssp             HHHHTTSTTCCEE
T ss_pred             HHHHHHCCCCCEE
Confidence             123456666665

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.44  E-value=0.00024  Score=54.21  Aligned_cols=59  Identities=19%  Similarity=0.241  Sum_probs=36.1

Q ss_pred             CCcccEEEEccCcchhch---hhhccCCCCCcEEEeeccCCcCcccc-cccCCCCCceEeccccC
Q 018478          100 PPSLKSLRVQGCSKLESI---AETLDNSTSLETIHIFYCENMKILPS-GLHNLRQLQEISIEGCG  160 (355)
Q Consensus       100 ~~~L~~L~l~~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~  160 (355)
                      +++|+.|++++|. ++.+   +..+..+++|+.|++++|. ++.++. ......+|+.+++.+|+
T Consensus        64 ~~~L~~L~Ls~N~-i~~l~~~~~~~~~l~~L~~L~Ls~N~-i~~l~~l~~l~~~~L~~L~L~~Np  126 (162)
T d1koha1          64 IPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNE-LKSERELDKIKGLKLEELWLDGNS  126 (162)
T ss_dssp             CTTCCCCCCCSSC-CCCCSGGGTHHHHSTTCCCCCCTTSC-CCCGGGHHHHTTCCCSSCCCTTST
T ss_pred             CCCCCEeeCCCcc-ccCCchhHHHHhhCCcccccccccCc-cccchhhhhhhccccceeecCCCC
Confidence            3577777777776 5433   3344557777777777766 555432 22234457777777764

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.35  E-value=0.00052  Score=52.56  Aligned_cols=82  Identities=16%  Similarity=0.143  Sum_probs=35.1

Q ss_pred             CcccEEEEccCcchh-----chhhhccCCCCCcEEEeeccCCcC----cccccccCCCCCceEeccccCCCcC-----CC
Q 018478          101 PSLKSLRVQGCSKLE-----SIAETLDNSTSLETIHIFYCENMK----ILPSGLHNLRQLQEISIEGCGNLES-----FP  166 (355)
Q Consensus       101 ~~L~~L~l~~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~l~~-----~~  166 (355)
                      ++|+.|+++++..+.     .+...+...++|++|++++|..-.    .+...+...+.|+.|++++| .+..     +.
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n-~i~~~g~~~l~   93 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPELLARLL   93 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHHHHHH
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehh-hcchHHHHHHH
Confidence            455555555432221     122334445555555555554211    12223333455555555554 2221     11


Q ss_pred             CCCCCCCCcceEEEccc
Q 018478          167 EGGLPCAKLKEVVIRWC  183 (355)
Q Consensus       167 ~~~~~~~~L~~L~l~~~  183 (355)
                      ..+...+.|++|+++++
T Consensus        94 ~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          94 RSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             HHTTTTCCCSEEECCCC
T ss_pred             HHHHhCCcCCEEECCCC
Confidence            22333445666666543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.12  E-value=0.00092  Score=51.09  Aligned_cols=37  Identities=14%  Similarity=0.141  Sum_probs=15.7

Q ss_pred             CccEEEecCCcchhhhhhhhcccCCCCCccceeEecc
Q 018478          217 NLHSLDIRGNMEIWKSMIEWGQGFHRFSSLRELRIEG  253 (355)
Q Consensus       217 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  253 (355)
                      .|+.|++++|.........+...+...++|++|++++
T Consensus        73 ~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~  109 (167)
T d1pgva_          73 SLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN  109 (167)
T ss_dssp             SCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred             cccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCC
Confidence            4444555555433222222212244445555555554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.28  E-value=0.0021  Score=48.91  Aligned_cols=59  Identities=19%  Similarity=0.273  Sum_probs=25.6

Q ss_pred             CcccEEEEccCcchh-----chhhhccCCCCCcEEEeeccCCcCc----ccccccCCCCCceEecccc
Q 018478          101 PSLKSLRVQGCSKLE-----SIAETLDNSTSLETIHIFYCENMKI----LPSGLHNLRQLQEISIEGC  159 (355)
Q Consensus       101 ~~L~~L~l~~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~  159 (355)
                      ++|+.|+++++..++     .+...+...++|++|++++|..-..    +...+...+.++.+++.+|
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~   84 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN   84 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccc
Confidence            355555555432221     1223344455555555555542111    2223333455555555544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.72  E-value=0.0023  Score=48.66  Aligned_cols=85  Identities=21%  Similarity=0.183  Sum_probs=47.6

Q ss_pred             hhccCCCCCcEEEeeccCCcCc-----ccccccCCCCCceEeccccCCCcC-----CCCCCCCCCCcceEEEccccCcC-
Q 018478          119 ETLDNSTSLETIHIFYCENMKI-----LPSGLHNLRQLQEISIEGCGNLES-----FPEGGLPCAKLKEVVIRWCGRLE-  187 (355)
Q Consensus       119 ~~~~~l~~L~~L~l~~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~l~~-----~~~~~~~~~~L~~L~l~~~~~~~-  187 (355)
                      ....+.++|++|++.++..++.     +...+...++|+.|++++| .++.     +...+...+.++.+++.+|..-. 
T Consensus        11 ~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n-~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~   89 (166)
T d1io0a_          11 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGS   89 (166)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             HHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCC-cccHHHHHHHHHHHhhcccchhhhhccccccch
Confidence            3345678999999887544432     3345556788888888886 3321     11122234577777777654211 


Q ss_pred             ---cccccccCCCCCceEEE
Q 018478          188 ---ALPKGLHNLKSLQKLTI  204 (355)
Q Consensus       188 ---~~p~~l~~~~~L~~L~l  204 (355)
                         .+...+...++|+.+++
T Consensus        90 g~~~l~~~l~~~~~L~~l~L  109 (166)
T d1io0a_          90 GILALVEALQSNTSLIELRI  109 (166)
T ss_dssp             HHHHHHHGGGGCSSCCEEEC
T ss_pred             hHHHHHHHHHhCccccEEee
Confidence               12234455555555544