Citrus Sinensis ID: 018490

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-----
MLTGFHCNTLPFSCLPSRRSRTRTTDIILSALSKTPRFTSACRSSVPIHPTAFNFPTRRFSKVVSALVSEENAVATDVFKLTYLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQIVLIGMKTLVQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVIATPNAKTLLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQGQLTLYYEPHCVYNQNFLEKERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKFIVPMKNGDLDSKGFLASIIQSEGTVESFKELLSKELPDAQLLEPTPGEPLEIPAPSDNP
cccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccEEEEEEccEEEEEcccccccccccccccccccccccccHHHHHHcccccccccccccccEEEEcccccccccHHHHHHHHccccccEEEEcccHHHHHccccccEEEcccccEEEEcccccccEEEEEEccccccccccccccEEEEEEcccccEEEEcccccccccccccccccEEEEcccccccccccccccHHHHHHHHHHccccEEEEccccccccccHHHHHHcccccHHHHHHHHHHcccccEEEEcccccEEEEccccccc
cccHHccccccccccccccccccccccEcccccccccccccccccccccccccccccccccEEEEEEEEccccccccEEEEEEEcccEEEEEEcccEEEEcccccccccccccHHHccccccccccccccccccccccccccccccEEEEEccccccccHHHHHHHHHHccccEEEccHHHHHHHHHHHHccEEcccccEEEEEcccccEEEEEEcccccccccccccccEEEEEcccccEEEEEcccccccHHHHHcccccEEEEcccccccccccEcccHHHHHHHHHHccccEEEEccccccccccHHHHHHHccccHHHHHHHHHHcccccEEEEcccccEEEEccccccc
mltgfhcntlpfsclpsrrsrtrTTDIILSALsktprftsacrssvpihptafnfptrRFSKVVSALVSEENAVATDVFKLTYlegnswlwdldgvkvlvdpilvgnldfgipwLFDAGKKFLKSFQIVLIGMKTlvqlsdlpqvdCLLITQslddhchlktlkplskmspnlkviatpnaktlldplfqnvtyvepgqsseiegrngsklrvkatagpvlgppwqrpengylvnssqgqltlyyephcvynqnflekersdiiitPVIKQllpkftlvsGQEDAVKLAKLLHAKfivpmkngdldsKGFLASIIQSEGTVESFKELLSkelpdaqlleptpgepleipapsdnp
mltgfhcntlpfsclpsrrsrtRTTDIILsalsktprftsacrssvpihptafnfptRRFSKVVSALVSEENAVATDVFKLTYLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQIVLIGMKTLVQLSDLPQVDCLLITQSLDDHCHLKTlkplskmspnlKVIATPNAKTLLDPLFQNVTYVepgqsseiegrngskLRVKATAGPVLGPPWQRPENGYLVNSSQGQLTLYYEPHCVYNQNFLEKERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKFIVPMKNGDLDSKGFLASIIQSEGTVESFKELLSKELPdaqlleptpgepleipapsdnp
MLTGFHCNTLPFSCLPsrrsrtrttDIILSALSKTPRFTSACRSSVPIHPTAFNFPTRRFSKVVSALVSEENAVATDVFKLTYLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQIVLIGMKTLVQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVIATPNAKTLLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQGQLTLYYEPHCVYNQNFLEKERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKFIVPMKNGDLDSKGFLASIIQSEGTVESFKELLSKELPDAQLLEPTPGEPLEIPAPSDNP
****FHCNTLPFSCLP******RTTDIILSALSKTPRFTSACRSSVPIHPTAFNFPTRRFSKVVSALVSEENAVATDVFKLTYLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQIVLIGMKTLVQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVIATPNAKTLLDPLFQNVTYV*****************************WQRPENGYLVNSSQGQLTLYYEPHCVYNQNFLEKERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKFIVPMKNGDLDSKGFLASIIQS**************************************
*****************************************************************************VFKLTYLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQIVLIGMKTLVQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVIATPNAKTLLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQGQLTLYYEPHCVYNQNFLEKERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKFIVPMKNGDLDSKGFLASIIQSEGTVESFKELLSKELPDAQLLEPTPGEPL*********
MLTGFHCNTLPFSCLPSRRSRTRTTDIILSALSKTPRFTSACRSSVPIHPTAFNFPTRRFSKVVSALVSEENAVATDVFKLTYLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQIVLIGMKTLVQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVIATPNAKTLLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQGQLTLYYEPHCVYNQNFLEKERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKFIVPMKNGDLDSKGFLASIIQSEGTVESFKELLSKELPDAQLLEPTPGEPLE********
**T*FHC*TLPFSCL********TTDIILSALSKTPRFTSACRSSVPIHPTAFNFPTRRFSKVVSALVSEENAVATDVFKLTYLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQIVLIGMKTLVQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVIATPNAKTLLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQGQLTLYYEPHCVYNQNFLEKERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKFIVPMKNGDLDSKGFLASIIQSEGTVESFKELLSKELPDAQLLEPTPGEPLEIPA*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLTGFHCNTLPFSCLPSRRSRTRTTDIILSALSKTPRFTSACRSSVPIHPTAFNFPTRRFSKVVSALVSEENAVATDVFKLTYLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQIVLIGMKTLVQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVIATPNAKTLLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQGQLTLYYEPHCVYNQNFLEKERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKFIVPMKNGDLDSKGFLASIIQSEGTVESFKELLSKELPDAQLLEPTPGEPLEIPAPSDNP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query355
255576525336 conserved hypothetical protein [Ricinus 0.929 0.982 0.671 1e-132
225423905340 PREDICTED: uncharacterized protein LOC10 0.873 0.911 0.717 1e-131
224101687345 predicted protein [Populus trichocarpa] 0.870 0.895 0.727 1e-130
356499707338 PREDICTED: uncharacterized protein LOC10 0.918 0.964 0.671 1e-127
357488383334 hypothetical protein MTR_5g054360 [Medic 0.926 0.985 0.652 1e-123
449434654339 PREDICTED: uncharacterized protein LOC10 0.794 0.831 0.724 1e-122
449519675339 PREDICTED: uncharacterized protein LOC10 0.797 0.834 0.722 1e-122
297851388350 hypothetical protein ARALYDRAFT_473173 [ 0.898 0.911 0.606 1e-119
18397206350 metallo-beta-lactamase domain-containing 0.926 0.94 0.623 1e-119
116783498369 unknown [Picea sitchensis] 0.740 0.712 0.569 4e-98
>gi|255576525|ref|XP_002529154.1| conserved hypothetical protein [Ricinus communis] gi|223531433|gb|EEF33267.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  476 bits (1226), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 237/353 (67%), Positives = 280/353 (79%), Gaps = 23/353 (6%)

Query: 4   GFHCNTLPFSCLPSRRSRTRTTDIILSALSKTPRFTSACRSSVPIHPTAFNFPTRRFSKV 63
             HCN LP     S   RTR        L      +S C+  + I  ++   P +R  K 
Sbjct: 2   ALHCNYLP-----SNPFRTRPFSHF--TLFSPTHLSSCCKGPICISSSSLKLPKKRLHKG 54

Query: 64  VSALVSEENAVAT-----DVFKLTYLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDA 118
           VSA+VSEE AV +     D  KLTYLEGNSWLW++ G+ +LVDPILVGNLDFGIPWL+DA
Sbjct: 55  VSAVVSEETAVGSSSGTNDAIKLTYLEGNSWLWEVSGINLLVDPILVGNLDFGIPWLYDA 114

Query: 119 GKKFLKSFQIVLIGMKTLVQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVIAT 178
            KK +K+FQ           L+DLP+VD LLITQSLDDHCHLKTLKPLS+  PN+++IAT
Sbjct: 115 AKKLIKNFQ-----------LNDLPEVDSLLITQSLDDHCHLKTLKPLSEKLPNIRIIAT 163

Query: 179 PNAKTLLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQ 238
           PNA+ LLDPLF NVTY+EPG+++EIEG+NGSK+RV+ATAGPVLGPPWQRPENGYLV+S Q
Sbjct: 164 PNAQPLLDPLFCNVTYLEPGENAEIEGKNGSKVRVQATAGPVLGPPWQRPENGYLVSSPQ 223

Query: 239 GQLTLYYEPHCVYNQNFLEKERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKFIV 298
           GQ+TLYYEPHCVY++NFLEKE +DI+ITPVIKQLLPKFTLV GQEDAVKLAKLLHAKFIV
Sbjct: 224 GQMTLYYEPHCVYDKNFLEKEHADIVITPVIKQLLPKFTLVYGQEDAVKLAKLLHAKFIV 283

Query: 299 PMKNGDLDSKGFLASIIQSEGTVESFKELLSKELPDAQLLEPTPGEPLEIPAP 351
           PMKNGDLD+KG LASII+SEGT+ESFKELL+KELPD+++LEPTPG PL+I AP
Sbjct: 284 PMKNGDLDAKGLLASIIRSEGTIESFKELLAKELPDSRVLEPTPGVPLQISAP 336

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225423905|ref|XP_002281785.1| PREDICTED: uncharacterized protein LOC100247534 [Vitis vinifera] gi|297737856|emb|CBI27057.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224101687|ref|XP_002312382.1| predicted protein [Populus trichocarpa] gi|222852202|gb|EEE89749.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356499707|ref|XP_003518678.1| PREDICTED: uncharacterized protein LOC100798986 [Glycine max] Back     alignment and taxonomy information
>gi|357488383|ref|XP_003614479.1| hypothetical protein MTR_5g054360 [Medicago truncatula] gi|355515814|gb|AES97437.1| hypothetical protein MTR_5g054360 [Medicago truncatula] Back     alignment and taxonomy information
>gi|449434654|ref|XP_004135111.1| PREDICTED: uncharacterized protein LOC101203294 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449519675|ref|XP_004166860.1| PREDICTED: uncharacterized protein LOC101230153 [Cucumis sativus] Back     alignment and taxonomy information
>gi|297851388|ref|XP_002893575.1| hypothetical protein ARALYDRAFT_473173 [Arabidopsis lyrata subsp. lyrata] gi|297339417|gb|EFH69834.1| hypothetical protein ARALYDRAFT_473173 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18397206|ref|NP_564334.1| metallo-beta-lactamase domain-containing protein [Arabidopsis thaliana] gi|12321412|gb|AAG50777.1|AC079288_6 unknown protein [Arabidopsis thaliana] gi|12323515|gb|AAG51727.1|AC068667_6 unknown protein; 129333-127623 [Arabidopsis thaliana] gi|14596083|gb|AAK68769.1| Unknown protein [Arabidopsis thaliana] gi|18377530|gb|AAL66931.1| unknown protein [Arabidopsis thaliana] gi|332192998|gb|AEE31119.1| metallo-beta-lactamase domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|116783498|gb|ABK22966.1| unknown [Picea sitchensis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query355
TAIR|locus:2013723350 AT1G29700 "AT1G29700" [Arabido 0.923 0.937 0.619 2.9e-110
TAIR|locus:2013723 AT1G29700 "AT1G29700" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1089 (388.4 bits), Expect = 2.9e-110, P = 2.9e-110
 Identities = 220/355 (61%), Positives = 265/355 (74%)

Query:     6 HCNTLPFSCLPXXXXXXXXXDIILSALSKTPRFTSACRS-SVPIHPTAFNFPTRRFSKVV 64
             H N+LP S                   S TP   S  RS S+ + P      +R  + VV
Sbjct:    16 HANSLPLSINTKSRVLSASA---FPLFSSTPHLPS--RSLSIRLSPNV----SRSLT-VV 65

Query:    65 SALVSEENAV-----ATDVFKLTYLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAG 119
             S+++SE+ A       TD FKLTYLEGNSWLW+  G+K+LVDPILVGNLDFGIPWL+DA 
Sbjct:    66 SSVLSEDRATNVSGSGTDAFKLTYLEGNSWLWETAGLKILVDPILVGNLDFGIPWLYDAA 125

Query:   120 KKFLKSFQIVLIGMKTLVQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVIATP 179
             K++LK+F+           L DLP+VDCLLITQSLDDHCHL TL+PLS+ SP +KVIATP
Sbjct:   126 KRYLKAFK-----------LDDLPEVDCLLITQSLDDHCHLNTLRPLSEKSPGIKVIATP 174

Query:   180 NAKTLLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQG 239
             NAK LLDPLF NVTY+EPG S E+  RNGSK+RVKATAGPVLGPPWQRPENGYL+ S + 
Sbjct:   175 NAKPLLDPLFSNVTYLEPGDSFELNARNGSKVRVKATAGPVLGPPWQRPENGYLLVSPED 234

Query:   240 QLTLYYEPHCVYNQNFLEKERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKFIVP 299
             Q++LYYEPHCV N   L+ ER+DI+ITPVIKQLLP+FTLVSGQEDAV+LAKLL AKF+VP
Sbjct:   235 QISLYYEPHCVCNMELLKNERADIVITPVIKQLLPRFTLVSGQEDAVQLAKLLKAKFVVP 294

Query:   300 MKNGDLDSKGFLASIIQSEGTVESFKELLSKELPDAQLLEPTPGEPLEIPAPSDN 354
             M+NG+L++KG LAS+++ EGT+ESFKELL KELP+AQ+LEP  G PLEI  PS +
Sbjct:   295 MQNGELEAKGLLASLVKKEGTIESFKELLLKELPEAQVLEPIAGIPLEILVPSSD 349


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.137   0.408    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      355       346   0.00098  116 3  11 22  0.41    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  611 (65 KB)
  Total size of DFA:  226 KB (2124 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  29.30u 0.17s 29.47t   Elapsed:  00:00:02
  Total cpu time:  29.30u 0.17s 29.47t   Elapsed:  00:00:02
  Start:  Mon May 20 15:41:00 2013   End:  Mon May 20 15:41:02 2013
GO:0003674 "molecular_function" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0010207 "photosystem II assembly" evidence=RCA
GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query355
pfam13483158 pfam13483, Lactamase_B_3, Beta-lactamase superfami 2e-31
COG2220258 COG2220, COG2220, Predicted Zn-dependent hydrolase 3e-09
pfam12706197 pfam12706, Lactamase_B_2, Beta-lactamase superfami 2e-05
>gnl|CDD|222167 pfam13483, Lactamase_B_3, Beta-lactamase superfamily domain Back     alignment and domain information 
 Score =  116 bits (292), Expect = 2e-31
 Identities = 45/226 (19%), Positives = 77/226 (34%), Gaps = 74/226 (32%)

Query: 80  KLTYLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQIVLIGMKTLVQL 139
            +T+L  +S+L +  G ++L DP LVG      P                          
Sbjct: 1   TITWLGHSSFLIEGGGKRILTDPFLVG---GRPPP------------------------- 32

Query: 140 SDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVIATPNAKTLLDPLFQNVTYVEPGQ 199
                 D +LI+ + DDH H   L                           N   +  G 
Sbjct: 33  ---VDADVVLISHAHDDHGHPDPLP-------------------------GNPHVLNGGG 64

Query: 200 SSEIEGRNGSKLRVKATAGP--VLGPPWQRPENGYLVNSSQGQLTLYYEPHCVYNQNFLE 257
           S  + G     L ++        +G   +   + +L    Q  L++Y+  H  +  +  +
Sbjct: 65  SYTVGG-----LEIRGVPTDHDRVGGRRRGGNSIFLFE--QDGLSIYHLGHLGHPLSDEQ 117

Query: 258 KE---RSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKFIVPM 300
                R D+++ PV         L  G E+A +LAK L  + ++PM
Sbjct: 118 LAELGRVDVLLVPVGG------PLTYGAEEAAELAKRLKPRVVIPM 157

This family is part of the beta-lactamase superfamily and is related to pfam00753. Length = 158
>gnl|CDD|225130 COG2220, COG2220, Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only] Back     alignment and domain information
>gnl|CDD|221727 pfam12706, Lactamase_B_2, Beta-lactamase superfamily domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 355
KOG3798343 consensus Predicted Zn-dependent hydrolase (beta-l 100.0
PRK11709355 putative L-ascorbate 6-phosphate lactonase; Provis 100.0
PRK00685228 metal-dependent hydrolase; Provisional 100.0
COG2220258 Predicted Zn-dependent hydrolases of the beta-lact 100.0
PF13483163 Lactamase_B_3: Beta-lactamase superfamily domain; 99.96
PF12706194 Lactamase_B_2: Beta-lactamase superfamily domain; 99.83
TIGR02651299 RNase_Z ribonuclease Z. Processing of the 3-prime 99.82
PRK11244250 phnP carbon-phosphorus lyase complex accessory pro 99.82
PRK02113252 putative hydrolase; Provisional 99.81
PRK00055270 ribonuclease Z; Reviewed 99.79
TIGR02649303 true_RNase_BN ribonuclease BN. Members of this pro 99.78
TIGR03307238 PhnP phosphonate metabolism protein PhnP. This fam 99.77
PRK05184302 pyrroloquinoline quinone biosynthesis protein PqqB 99.69
COG1234292 ElaC Metal-dependent hydrolases of the beta-lactam 99.63
TIGR02108302 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. 99.61
PRK04286298 hypothetical protein; Provisional 99.6
PRK02126334 ribonuclease Z; Provisional 99.59
TIGR00649 422 MG423 conserved hypothetical protein. Contains an 99.54
TIGR03675 630 arCOG00543 arCOG00543 universal archaeal KH-domain 99.46
smart00849183 Lactamase_B Metallo-beta-lactamase superfamily. Ap 99.4
COG0595 555 mRNA degradation ribonucleases J1/J2 (metallo-beta 99.3
PRK11921 394 metallo-beta-lactamase/flavodoxin domain-containin 99.24
COG1782 637 Predicted metal-dependent RNase, consists of a met 99.21
TIGR02650277 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Me 99.19
COG1236 427 YSH1 Predicted exonuclease of the beta-lactamase f 99.09
COG0426 388 FpaA Uncharacterized flavoproteins [Energy product 99.05
PRK05452 479 anaerobic nitric oxide reductase flavorubredoxin; 99.04
COG1235269 PhnP Metal-dependent hydrolases of the beta-lactam 98.99
PF00753194 Lactamase_B: Metallo-beta-lactamase superfamily; I 98.99
COG1237259 Metal-dependent hydrolases of the beta-lactamase s 98.94
COG2248304 Predicted hydrolase (metallo-beta-lactamase superf 98.94
TIGR03413248 GSH_gloB hydroxyacylglutathione hydrolase. Members 98.93
TIGR00361662 ComEC_Rec2 DNA internalization-related competence 98.93
KOG2121746 consensus Predicted metal-dependent hydrolase (bet 98.92
PRK11539755 ComEC family competence protein; Provisional 98.92
PLN02398329 hydroxyacylglutathione hydrolase 98.91
KOG1137 668 consensus mRNA cleavage and polyadenylation factor 98.9
PLN02469258 hydroxyacylglutathione hydrolase 98.9
PLN02962251 hydroxyacylglutathione hydrolase 98.77
KOG1136 501 consensus Predicted cleavage and polyadenylation s 98.77
PRK10241251 hydroxyacylglutathione hydrolase; Provisional 98.73
COG2333293 ComEC Predicted hydrolase (metallo-beta-lactamase 98.71
KOG0813265 consensus Glyoxylase [General function prediction 98.52
COG0491252 GloB Zn-dependent hydrolases, including glyoxylase 98.36
KOG1135 764 consensus mRNA cleavage and polyadenylation factor 97.88
PF02112335 PDEase_II: cAMP phosphodiesterases class-II; Inter 97.83
KOG0814237 consensus Glyoxylase [General function prediction 97.6
KOG1361 481 consensus Predicted hydrolase involved in interstr 97.32
PF14597199 Lactamase_B_5: Metallo-beta-lactamase superfamily; 97.08
COG5212356 PDE1 Low-affinity cAMP phosphodiesterase [Signal t 95.51
KOG4736302 consensus Uncharacterized conserved protein [Funct 93.47
COG2015 655 Alkyl sulfatase and related hydrolases [Secondary 83.16
TIGR00649422 MG423 conserved hypothetical protein. Contains an 82.91
>KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=2.1e-40  Score=294.14  Aligned_cols=246  Identities=22%  Similarity=0.276  Sum_probs=201.2

Q ss_pred             CceEEEEecCcEEEEEeCCeEEEEccccCCCCCCCcccccccCccccchhhhhhhccccCCCCCCCCCcCEEEecCCCCC
Q 018490           77 DVFKLTYLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQIVLIGMKTLVQLSDLPQVDCLLITQSLDD  156 (355)
Q Consensus        77 ~~~~itwlGhss~li~~~g~~iLiDP~~sg~~~~p~~~~~~g~~~r~~~~~~~~~g~~~~~~~~~lp~iD~VlISH~H~D  156 (355)
                      ..+--|||||||.++..+|.++++||+|+.+++|  .-  .|+ +|+.+         ++..++++|++|.+++||+|+|
T Consensus        79 ~~~~~twlg~a~~~~~~~g~~~~tdpvf~d~~if--~s--~gP-kry~~---------pp~~~~~~p~~d~~~vsh~h~d  144 (343)
T KOG3798|consen   79 SDLFATWLGHATVLVDLEGVKFVTDPVWADRASF--TS--FGP-KRYRP---------PPMKLEDLPDLDFAVVSHDHYD  144 (343)
T ss_pred             CcHHHhhhcceeEEEeccCcEEecchhhccchhh--cc--cCc-ccccC---------CchhhccCCCCceecccccccc
Confidence            4455699999999999999999999999987763  22  244 34444         5667899999999999999999


Q ss_pred             CCChhhHHHhhhcCCCceEEEcCChHH-HHhhcC-CceEEcCCCceEEeCcccCCceEEEEEecCccC-CCC-C---CCc
Q 018490          157 HCHLKTLKPLSKMSPNLKVIATPNAKT-LLDPLF-QNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLG-PPW-Q---RPE  229 (355)
Q Consensus       157 Hld~~tl~~l~~~~~~~~v~~~~~~~~-~l~~~~-~~v~~l~~~e~~~l~~~~~~~l~i~~~pa~~~g-~~~-~---~~~  229 (355)
                      |+|..+++.+..+.  .++.+.+++.. ++...+ ..++++.||++.++- ..+..++|.|+|++|++ |++ +   +.|
T Consensus       145 hld~~~~~~~~~~~--~~~wfvp~g~k~~m~~~gc~~v~el~wwe~~~~v-kn~~~~ti~~tPaqHw~~R~L~D~Nk~LW  221 (343)
T KOG3798|consen  145 HLDADAVKKITDRN--PQIWFVPLGMKKWMEGDGSSTVTELNWGESSEFV-KNGKTYTIWCLPAQHWGQRGLFDRNKRLW  221 (343)
T ss_pred             ccchHHHHhhhccC--ccceeehhhhhheecCCCCCceeEeeccchhcee-cCCcEEEEEEcchhhhcccccccCCccee
Confidence            99999999998764  44455566554 665554 569999999887763 22456899999999875 443 2   349


Q ss_pred             cEEEEEecCCceeEEEcCCCCCCc-cccccc----CCcEEEEccccccCCCcee---ccCHHHHHHHHHHcCCCEEEEec
Q 018490          230 NGYLVNSSQGQLTLYYEPHCVYNQ-NFLEKE----RSDIIITPVIKQLLPKFTL---VSGQEDAVKLAKLLHAKFIVPMK  301 (355)
Q Consensus       230 ~g~~i~~~~~~~~i~~sGDt~~~~-~~~~~~----~~Dl~~l~~g~~~~~~~~~---h~~~~ea~~~~~~l~~k~~ip~H  301 (355)
                      +||.+..+  +.++||+|||||.+ .|++|+    ++|||.+|||+ |.|+|.|   |.+|+||+++++++++|..|.+|
T Consensus       222 ~sw~v~g~--~nrfffaGDTGyc~~~F~~IgerfGpfdLAaiPiGa-YePrWfmK~~HInPeEav~Ihkdv~arns~gIH  298 (343)
T KOG3798|consen  222 SSWAVIGE--NNRFFFAGDTGYCDGEFKKIGERFGPFDLAAIPIGA-YEPRWFMKSQHINPEEAVEIHKDVRAKNSIGIH  298 (343)
T ss_pred             eeeEEecC--CceEEecCCCCcccHHHHHHHHhcCCcceeeccccc-cCchhhcccccCCHHHHHHHHHHHhhhcceeEe
Confidence            99999988  56999999999998 677764    99999999987 9998876   99999999999999999999999


Q ss_pred             cCCccccccccccccccCCHHHHHHHHHhcCCCCe-EeccCCCCeEE
Q 018490          302 NGDLDSKGFLASIIQSEGTVESFKELLSKELPDAQ-LLEPTPGEPLE  347 (355)
Q Consensus       302 ~~~f~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~Ge~~~  347 (355)
                      ||||.    |+.+ -.-||.++++++++..|.+.+ +++++.||.++
T Consensus       299 WGTf~----l~~E-yyLEP~~KL~el~e~~glkd~~f~~~e~Ge~~e  340 (343)
T KOG3798|consen  299 WGTFH----LGSE-YYLEPRDKLKELMEAEGLKDTSFVTIEMGEIWE  340 (343)
T ss_pred             eeeee----cccc-eecCcHHHHHHHHHhcCCCCceEEeeccccccc
Confidence            99998    7776 357999999999999877644 99999999553

>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional Back     alignment and domain information
>PRK00685 metal-dependent hydrolase; Provisional Back     alignment and domain information
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only] Back     alignment and domain information
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A Back     alignment and domain information
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A Back     alignment and domain information
>TIGR02651 RNase_Z ribonuclease Z Back     alignment and domain information
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional Back     alignment and domain information
>PRK02113 putative hydrolase; Provisional Back     alignment and domain information
>PRK00055 ribonuclease Z; Reviewed Back     alignment and domain information
>TIGR02649 true_RNase_BN ribonuclease BN Back     alignment and domain information
>TIGR03307 PhnP phosphonate metabolism protein PhnP Back     alignment and domain information
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional Back     alignment and domain information
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only] Back     alignment and domain information
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B Back     alignment and domain information
>PRK04286 hypothetical protein; Provisional Back     alignment and domain information
>PRK02126 ribonuclease Z; Provisional Back     alignment and domain information
>TIGR00649 MG423 conserved hypothetical protein Back     alignment and domain information
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein Back     alignment and domain information
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily Back     alignment and domain information
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair] Back     alignment and domain information
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional Back     alignment and domain information
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only] Back     alignment and domain information
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type Back     alignment and domain information
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion] Back     alignment and domain information
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional Back     alignment and domain information
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only] Back     alignment and domain information
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain [] Back     alignment and domain information
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only] Back     alignment and domain information
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only] Back     alignment and domain information
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase Back     alignment and domain information
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2 Back     alignment and domain information
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only] Back     alignment and domain information
>PRK11539 ComEC family competence protein; Provisional Back     alignment and domain information
>PLN02398 hydroxyacylglutathione hydrolase Back     alignment and domain information
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>PLN02469 hydroxyacylglutathione hydrolase Back     alignment and domain information
>PLN02962 hydroxyacylglutathione hydrolase Back     alignment and domain information
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>PRK10241 hydroxyacylglutathione hydrolase; Provisional Back     alignment and domain information
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only] Back     alignment and domain information
>KOG0813 consensus Glyoxylase [General function prediction only] Back     alignment and domain information
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only] Back     alignment and domain information
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3 Back     alignment and domain information
>KOG0814 consensus Glyoxylase [General function prediction only] Back     alignment and domain information
>KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair] Back     alignment and domain information
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B Back     alignment and domain information
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms] Back     alignment and domain information
>KOG4736 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>TIGR00649 MG423 conserved hypothetical protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query355
3rpc_A264 Possible metal-dependent hydrolase; structural gen 5e-16
3kl7_A235 Putative metal-dependent hydrolase; structural gen 5e-09
3bv6_A379 Metal-dependent hydrolase; metallo protein, beta-l 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
2wyl_A360 L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2e-06
>3rpc_A Possible metal-dependent hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.49A {Veillonella parvula} Length = 264 Back     alignment and structure
 Score = 75.9 bits (187), Expect = 5e-16
 Identities = 35/289 (12%), Positives = 95/289 (32%), Gaps = 50/289 (17%)

Query: 80  KLTYLEGNS-WLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQIVLIGMKTLVQ 138
           + T++  N+     +     L+DP L           F+    + +   +V + +     
Sbjct: 6   QYTHI-RNATGKLTIKNTTFLIDPFL---APKDTYPGFEGTFNYQQRMPMVDLPLS---M 58

Query: 139 LSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVIATP--NAKTLLDPLFQNVTYVE 196
              L  V  +++T +  DH     +  + K   +L +      + + +    F +V    
Sbjct: 59  DDLLSNVTAVVVTHTHLDHWDDTAINSIPK---SLPIFVQNTADKELITSQGFIDVR--I 113

Query: 197 PGQSSEIEGRNGSKLRVKAT-----AGPVLG----PPWQRPENGYLVNSSQGQLTLY--- 244
             +S E  G     + ++ T        +       P      G +   +  + T+Y   
Sbjct: 114 IFESLEFNG-----ITLRKTGGSHGTVEMYANPVLAPLAGDAMGVIF-EAADEPTVYLVG 167

Query: 245 ---YEPHCVYNQNFLEKERSDIIITPVIKQLLPKF--TLVSGQEDAVKLAKLLHAKFIVP 299
              +       +  L +   ++II       +  F  +++ G +D  ++        I+ 
Sbjct: 168 DTVWTSD---VEKALLRFDPNVIIMNTGYAQILGFEDSIIMGTKDIGRMVVRKPEAKIIA 224

Query: 300 MKNGDLDSKGFLASIIQSEGTVESFKELLSKELPDAQLLEPTPGEPLEI 348
           +    ++          +  + +  ++ +     ++ +  P  GE + +
Sbjct: 225 VHMDTVN---------HTATSRKDVRKFIKGNNIESHVAVPEDGETITL 264
>3kl7_A Putative metal-dependent hydrolase; structural genomics, JOI for structural genomics, JCSG; 2.30A {Parabacteroides distasonis atcc 8503} Length = 235 Back     alignment and structure
>3bv6_A Metal-dependent hydrolase; metallo protein, beta-lactamase like fold, MCSG, structural PSI-2, protein structure initiative; 1.80A {Vibrio cholerae o1 biovar eltor} Length = 379 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2wyl_A L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59A {Escherichia coli} PDB: 2wym_A* Length = 360 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query355
3rpc_A264 Possible metal-dependent hydrolase; structural gen 100.0
2wyl_A360 L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 100.0
3kl7_A235 Putative metal-dependent hydrolase; structural gen 100.0
3bv6_A379 Metal-dependent hydrolase; metallo protein, beta-l 100.0
1vjn_A220 Zn-dependent hydrolase of metallo-beta-lactamase s 99.92
1zkp_A268 Hypothetical protein BA1088; zinc binding protein, 99.91
3zwf_A368 Zinc phosphodiesterase ELAC protein 1; beta-lactam 99.91
1y44_A320 Ribonuclease Z; zinc-dependent metal hydrolase, hy 99.9
2cbn_A306 Ribonuclease Z; phosphodiesterase beta lactamase t 99.89
3md7_A293 Beta-lactamase-like; ssgcid, hydrolase, structural 99.86
3g1p_A258 Protein PHNP; C-P lyase, phosphodiesterase, phosph 99.85
2e7y_A280 TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, 99.84
3jxp_A321 Coenzyme PQQ synthesis protein B; alpha-beta prote 99.79
2ycb_A 636 Beta-CAsp RNAse, cleavage and polyadenylation spec 99.71
3iek_A 431 Ribonuclease TTHA0252; metallo beta lactamase fold 99.66
2xr1_A 640 Cleavage and polyadenylation specificity factor 1 99.66
2az4_A 429 Hypothetical protein EF2904; structural genomics, 99.65
2i7t_A 459 Cleavage and polyadenylation specificity factor 73 99.61
3af5_A 651 Putative uncharacterized protein PH1404; archaeal 99.58
3zq4_A 555 Ribonuclease J 1, RNAse J1; hydrolase, RNA maturat 99.58
3bk2_A 562 RNAse J, metal dependent hydrolase; endoribonuclea 99.58
2i7x_A 717 Protein CFT2; polyadenylation, metallo-B-lactamase 99.48
3m8t_A294 'BLR6230 protein; subclass B3 beta-lactamase, zinc 99.48
4ax1_B303 Metallo-beta-lactamase AIM-1; hydrolase, antibioti 99.44
4b87_A 367 DNA cross-LINK repair 1A protein; dclre1A, DCLRE, 99.44
3hnn_A262 Putative diflavin flavoprotein A 5; PSI-2, protein 99.42
3l6n_A219 Metallo-beta-lactamase; zinc, hydolase, antibiotic 99.36
2bib_A 547 CBPE, teichoic acid phosphorylcholine esterase/ ch 99.34
2r2d_A276 AGR_PTI_140P, Zn-dependent hydrolases; lactonase, 99.3
1m2x_A223 Class B carbapenemase BLAB-1; alpha-beta/BETA-alph 99.29
3esh_A280 Protein similar to metal-dependent hydrolase; stru 99.29
3zdk_A 336 5' exonuclease apollo; hydrolase; HET: TLA; 2.16A 99.27
3adr_A261 Putative uncharacterized protein ST1585; quorum se 99.27
4efz_A298 Metallo-beta-lactamase family protein; structural 99.24
1p9e_A331 Methyl parathion hydrolase; Zn containing; 2.40A { 99.23
1k07_A263 FEZ-1 beta-lactamase; monomer with alpha-beta/BETA 99.23
4ad9_A289 Lactb2, beta-lactamase-like protein 2; hydrolase, 99.22
2xf4_A210 Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A 99.21
1e5d_A 402 Rubredoxin\:oxygen oxidoreductase; oxygenreductase 99.2
2ohh_A 404 Type A flavoprotein FPRA; beta-lactamase like doma 99.18
2zwr_A207 Metallo-beta-lactamase superfamily protein; hydrol 99.18
1a7t_A232 Metallo-beta-lactamase; hydrolase (beta-lactamase) 99.18
1ycg_A 398 Nitric oxide reductase; DIIRON site, oxidoreductas 99.17
4dik_A 410 Flavoprotein; TM0755, electron transport, DI-iron 99.17
3dha_A254 N-acyl homoserine lactone hydrolase; zinc bimetall 99.16
2q9u_A 414 A-type flavoprotein; flavodoxin like, beta lactama 99.15
2zo4_A317 Metallo-beta-lactamase family protein; hydrolase; 99.14
2vw8_A303 PA1000, PQSE; quinolone signal response protein, s 99.12
2gcu_A245 Putative hydroxyacylglutathione hydrolase 3; ethyl 99.11
1mqo_A227 Beta-lactamase II; alpha-beta/BETA-alpha fold, hyd 99.11
1sml_A269 Protein (penicillinase); metallo-beta-lactamase, a 99.1
4hl2_A243 Beta-lactamase NDM-1; structural genomics, PSI-bio 99.07
3aj3_A274 MLR6805 protein, 4-pyridoxolactonase; Zn-protein, 99.07
2p4z_A284 Metal-dependent hydrolases of the beta-lactamase s 99.06
2qed_A258 Hydroxyacylglutathione hydrolase; metallo-B- super 99.05
3tp9_A 474 Beta-lactamase and rhodanese domain protein; struc 99.04
3iog_A227 Beta-lactamase; hydrolase, antibiotic resistance, 99.03
1xm8_A254 Glyoxalase II; structural genomics, protein struct 99.02
3r2u_A 466 Metallo-beta-lactamase family protein; structural 99.02
1ztc_A221 Hypothetical protein TM0894; structural genomics, 99.02
1jjt_A228 IMP-1 metallo beta-lactamase; metallo-beta-lactama 99.01
3q6v_A233 Beta-lactamase; metalloenzyme, alpha-beta, hydrola 99.01
2y8b_A265 Metallo-B-lactamase; hydrolase, cephalosporins, an 98.98
2p18_A311 Glyoxalase II; metalloprotein, beta sandwich, alph 98.97
2p97_A201 Hypothetical protein; putative metal-dependent hyd 98.95
2fhx_A246 SPM-1; metallo-beta-lactamase, dinuclear zinc, ant 98.88
1qh5_A260 Glyoxalase II, protein (hydroxyacylglutathione hyd 98.86
4eyb_A270 Beta-lactamase NDM-1; metallo beta lactamase, anti 98.67
2cfu_A 658 SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1 98.44
3h3e_A267 Uncharacterized protein TM1679; structural genomic 98.25
2yhe_A 668 SEC-alkyl sulfatase; hydrolase, inversion, metallo 97.33
3bk2_A 562 RNAse J, metal dependent hydrolase; endoribonuclea 80.46
>3rpc_A Possible metal-dependent hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.49A {Veillonella parvula} Back     alignment and structure
Probab=100.00  E-value=2.5e-39  Score=300.66  Aligned_cols=244  Identities=13%  Similarity=0.217  Sum_probs=186.6

Q ss_pred             ceEEEEecCcEEEEEeCCeEEEEccccCCCCCCCcccccccCccccchhhhhhhccccCCCCCCCC-CcCEEEecCCCCC
Q 018490           78 VFKLTYLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQIVLIGMKTLVQLSDLP-QVDCLLITQSLDD  156 (355)
Q Consensus        78 ~~~itwlGhss~li~~~g~~iLiDP~~sg~~~~p~~~~~~g~~~r~~~~~~~~~g~~~~~~~~~lp-~iD~VlISH~H~D  156 (355)
                      .|+|||+||||++|+.+|++|||||++++++++ .++......++..+..      +.++++++++ ++|+|||||.|+|
T Consensus         4 ~m~it~lGha~~li~~~g~~iLiDp~~s~~~~~-~~~~~~~~~~~~~~~~------~~~~~~~~l~~~id~iliTH~H~D   76 (264)
T 3rpc_A            4 MTQYTHIRNATGKLTIKNTTFLIDPFLAPKDTY-PGFEGTFNYQQRMPMV------DLPLSMDDLLSNVTAVVVTHTHLD   76 (264)
T ss_dssp             CCEEEEEETTEEEEEETTEEEEESCCCCCTTCB-CCCTTBTTTTSCBSSS------CCSSCHHHHHTTCCEEECSCCCGG
T ss_pred             eEEEEEEeCcEEEEEECCEEEEeCcccCCCcCc-cCCCCcccccccCCCC------CCCCCHHHccccCCEEEECCCchh
Confidence            589999999999999999999999999986652 2232110001101110      1245566665 8999999999999


Q ss_pred             CCChhhHHHhhhcCCCceEEEc-CChHHHHhhcC-CceEEcCCCceEEeCcccCCceEEEEEecCccCCC-C--------
Q 018490          157 HCHLKTLKPLSKMSPNLKVIAT-PNAKTLLDPLF-QNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPP-W--------  225 (355)
Q Consensus       157 Hld~~tl~~l~~~~~~~~v~~~-~~~~~~l~~~~-~~v~~l~~~e~~~l~~~~~~~l~i~~~pa~~~g~~-~--------  225 (355)
                      |++..++..+.   .++++|++ +....++++++ .++.++  +++++++     +++|+++|++|+... +        
T Consensus        77 H~~~~~~~~~~---~~~~v~~~~~~~~~~l~~~g~~~~~~~--~~~~~~~-----~~~i~~~pa~H~~~~~~~~p~~~~~  146 (264)
T 3rpc_A           77 HWDDTAINSIP---KSLPIFVQNTADKELITSQGFIDVRII--FESLEFN-----GITLRKTGGSHGTVEMYANPVLAPL  146 (264)
T ss_dssp             GSCHHHHHHSC---TTSCEEESSHHHHHHHHHTTCSCEEEC--SSEEEET-----TEEEEEECCCSSCHHHHTSTTHHHH
T ss_pred             hCCCHHHHhhc---cCCeEEEeCHHHHHHHHhcCCCeeEEe--cccEEEC-----CEEEEEeccccCCcccccccccccc
Confidence            98755544443   37899998 55666888886 456665  5789997     899999999986321 0        


Q ss_pred             CCCccEEEEEecCCceeEEEcCCCCCCccccccc---CCcEEEEccccccCCCc--eeccCHHHHHHHHHHcCCCEEEEe
Q 018490          226 QRPENGYLVNSSQGQLTLYYEPHCVYNQNFLEKE---RSDIIITPVIKQLLPKF--TLVSGQEDAVKLAKLLHAKFIVPM  300 (355)
Q Consensus       226 ~~~~~g~~i~~~~~~~~i~~sGDt~~~~~~~~~~---~~Dl~~l~~g~~~~~~~--~~h~~~~ea~~~~~~l~~k~~ip~  300 (355)
                      ...|+||+|+.++ +.+|||+|||+|.+++.++.   ++|++++|+|++..+++  ..||+++||+++++.+++|++||+
T Consensus       147 ~~~~~g~~i~~~~-~~~i~~~GDt~~~~~~~~~~~~~~~Dv~il~~g~~~~~~~~~~~hm~~~ea~~~~~~l~~~~vi~~  225 (264)
T 3rpc_A          147 AGDAMGVIFEAAD-EPTVYLVGDTVWTSDVEKALLRFDPNVIIMNTGYAQILGFEDSIIMGTKDIGRMVVRKPEAKIIAV  225 (264)
T ss_dssp             HCCCCEEEEECTT-SCCEEECCSCCSCHHHHHHHHHHCCSEEEEECSCBCBTTCSSCSSCCHHHHHHHHHHCTTSEEEEE
T ss_pred             ccccEEEEEEeCC-ccEEEEECCcCchHHHHHHHHHhCCCEEEEecCccccccccCCcccCHHHHHHHHHhCCcCeEEEE
Confidence            1247899999863 47999999999999877643   79999999986322222  469999999999999999999999


Q ss_pred             ccCCccccccccccccccCCHHHHHHHHHhcCCCCeEeccCCCCeEEc
Q 018490          301 KNGDLDSKGFLASIIQSEGTVESFKELLSKELPDAQLLEPTPGEPLEI  348 (355)
Q Consensus       301 H~~~f~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~Ge~~~l  348 (355)
                      ||++|.         .+.++.+++++.+++.+.+.++.+|++||+++|
T Consensus       226 H~~~~~---------~~~~~~~~l~~~~~~~g~~~~~~~~~~Ge~~~l  264 (264)
T 3rpc_A          226 HMDTVN---------HTATSRKDVRKFIKGNNIESHVAVPEDGETITL  264 (264)
T ss_dssp             SCSSST---------TBCSCHHHHHHHHHHTTCTTTEECCCTTCEEEC
T ss_pred             cccccc---------ccccCHHHHHHHHHHcCCCCcEEecCCCCEEeC
Confidence            999987         257899999999988655568999999999975
>2wyl_A L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59A {Escherichia coli} PDB: 2wym_A* Back     alignment and structure
>3kl7_A Putative metal-dependent hydrolase; structural genomics, JOI for structural genomics, JCSG; 2.30A {Parabacteroides distasonis atcc 8503} Back     alignment and structure
>3bv6_A Metal-dependent hydrolase; metallo protein, beta-lactamase like fold, MCSG, structural PSI-2, protein structure initiative; 1.80A {Vibrio cholerae o1 biovar eltor} Back     alignment and structure
>1vjn_A Zn-dependent hydrolase of metallo-beta-lactamase superfamily TM0207; metallo-hydrolase/oxidoreductase fold, structural genomics; 2.00A {Thermotoga maritima} SCOP: d.157.1.4 Back     alignment and structure
>1zkp_A Hypothetical protein BA1088; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.50A {Bacillus anthracis str} SCOP: d.157.1.9 Back     alignment and structure
>3zwf_A Zinc phosphodiesterase ELAC protein 1; beta-lactamase, hydrolase, metal-binding, tRNA processing, zinc-binding, catabolism; 1.70A {Homo sapiens} Back     alignment and structure
>1y44_A Ribonuclease Z; zinc-dependent metal hydrolase, hydrolase; HET: MES; 2.10A {Bacillus subtilis} SCOP: d.157.1.7 PDB: 2fk6_A* Back     alignment and structure
>2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z, hydrolase, metal- binding, endonuclease, tRNA processing, zinc; 2.9A {Escherichia coli} SCOP: d.157.1.7 Back     alignment and structure
>3md7_A Beta-lactamase-like; ssgcid, hydrolase, structural genomics, structural genomics center for infectious disease; HET: 5GP TLA; 1.27A {Brucella melitensis biovar abortus} PDB: 3qh8_A* 3py6_A* 3py5_A* Back     alignment and structure
>3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate utilization, alkylphosphonate uptake; 1.40A {Escherichia coli} PDB: 3p2u_A Back     alignment and structure
>2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.97A {Thermotoga maritima} SCOP: d.157.1.7 PDB: 1ww1_A Back     alignment and structure
>3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas putida} SCOP: d.157.1.6 PDB: 1xto_A Back     alignment and structure
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid} Back     alignment and structure
>3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease, hydrolase, metal- nuclease, RNA-binding, rRNA processing; HET: FLC; 2.05A {Thermus thermophilus} SCOP: d.157.1.10 PDB: 2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A* Back     alignment and structure
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei} Back     alignment and structure
>2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein STR initiative, midwest center for structural genomics, MCSG, U function; 2.00A {Enterococcus faecalis} SCOP: d.157.1.10 Back     alignment and structure
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A Back     alignment and structure
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A* Back     alignment and structure
>3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A {Bacillus subtilis} Back     alignment and structure
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A* Back     alignment and structure
>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10 Back     alignment and structure
>3m8t_A 'BLR6230 protein; subclass B3 beta-lactamase, zinc enzyme, sulfonamide complex hydrolase-hydrolase inhibitor complex; HET: 4NZ; 1.33A {Bradyrhizobium japonicum} PDB: 3lvz_A* 2gmn_A Back     alignment and structure
>4ax1_B Metallo-beta-lactamase AIM-1; hydrolase, antibiotic resistance, acquired B3, drug binding; 1.40A {Pseudomonas aeruginosa} PDB: 4awy_B 4awz_A 4ax0_B Back     alignment and structure
>4b87_A DNA cross-LINK repair 1A protein; dclre1A, DCLRE, interstrand crosslink repair, hydrolase, NIT mustard, cancer, chemotherapy, PSO2 homolog,; HET: DNA; 2.16A {Homo sapiens} Back     alignment and structure
>3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance, hydrolase; 1.65A {Chryseobacterium indologenes} SCOP: d.157.1.0 Back     alignment and structure
>2bib_A CBPE, teichoic acid phosphorylcholine esterase/ choline protein; choline-binding protein, PCE, phosphorylcholine estera hydrolase; HET: PC BTB; 1.92A {Streptococcus pneumoniae} SCOP: b.109.1.1 d.157.1.8 PDB: 1wra_A* Back     alignment and structure
>2r2d_A AGR_PTI_140P, Zn-dependent hydrolases; lactonase, N-acyl hompserine lactone, DI-nuclear zinc center quenching, AIIB, phosphate; HET: PO4; 1.75A {Agrobacterium tumefaciens} Back     alignment and structure
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1 Back     alignment and structure
>3esh_A Protein similar to metal-dependent hydrolase; structural genomics, PSI-2, protein structure initiative; 2.50A {Staphylococcus aureus subsp} Back     alignment and structure
>3zdk_A 5' exonuclease apollo; hydrolase; HET: TLA; 2.16A {Homo sapiens} Back     alignment and structure
>3adr_A Putative uncharacterized protein ST1585; quorum sensing, quinolone signal, metallo-beta-lactamase FOL conserved hypothetical protein; HET: EPE; 1.80A {Sulfolobus tokodaii} Back     alignment and structure
>4efz_A Metallo-beta-lactamase family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.60A {Burkholderia pseudomallei} Back     alignment and structure
>1p9e_A Methyl parathion hydrolase; Zn containing; 2.40A {Pseudomonas SP} SCOP: d.157.1.5 Back     alignment and structure
>1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two monomers PER AS UNIT., hydrolase; HET: GOL; 1.65A {Fluoribacter gormanii} SCOP: d.157.1.1 PDB: 1jt1_A* 1l9y_A Back     alignment and structure
>4ad9_A Lactb2, beta-lactamase-like protein 2; hydrolase, metallo-beta lactamase, mitochondria; 2.60A {Homo sapiens} Back     alignment and structure
>2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella enterica} Back     alignment and structure
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3 Back     alignment and structure
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A* Back     alignment and structure
>2zwr_A Metallo-beta-lactamase superfamily protein; hydrolase; 2.20A {Thermus thermophilus} PDB: 2zzi_A Back     alignment and structure
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A* Back     alignment and structure
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A* Back     alignment and structure
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A* Back     alignment and structure
>3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase, quorum quenching; HET: C6L GOL; 0.95A {Bacillus thuringiensis serovar kurstakorganism_taxid} PDB: 3dhb_A* 3dhc_A* 2a7m_A* 2br6_A 2btn_A Back     alignment and structure
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis} Back     alignment and structure
>2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus thermophilus} Back     alignment and structure
>2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein, SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A 2q0i_A 3dh8_A* Back     alignment and structure
>2gcu_A Putative hydroxyacylglutathione hydrolase 3; ethylmalonic encephalopathy, ETHE1, structural genomics, protein structure initiative; 1.48A {Arabidopsis thaliana} Back     alignment and structure
>1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT; 1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A 1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A 3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A 3kns_A 3knr_A 2bfz_A ... Back     alignment and structure
>1sml_A Protein (penicillinase); metallo-beta-lactamase, antibiotic resistance, binuclear zinc, hydrolase; 1.70A {Stenotrophomonas maltophilia} SCOP: d.157.1.1 PDB: 2aio_A* 2fm6_A 2fu6_A 2fu7_A* 2fu8_A* 2fu9_A* 2gfj_A* 2gfk_A* 2h6a_A 2hb9_A* 2qdt_A* 2qjs_A 2qin_A Back     alignment and structure
>4hl2_A Beta-lactamase NDM-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ZZ7; 1.05A {Klebsiella pneumoniae} PDB: 4hl1_A* 4h0d_A* 4gyu_A* 4gyq_A 3q6x_A* 3spu_A 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A Back     alignment and structure
>3aj3_A MLR6805 protein, 4-pyridoxolactonase; Zn-protein, metallo-beta-lactamase, hydrolase; 1.58A {Mesorhizobium loti} PDB: 3aj0_A Back     alignment and structure
>2p4z_A Metal-dependent hydrolases of the beta-lactamase superfamily II; metal-dependent hydrolases of the beta-lactamase superfamily hydrolase; 2.10A {Thermoanaerobacter tengcongensis} Back     alignment and structure
>2qed_A Hydroxyacylglutathione hydrolase; metallo-B- superfamily, salmonella typhimurium LT2; 1.45A {Salmonella typhimurium} SCOP: d.157.1.2 Back     alignment and structure
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding; HET: SDF; 1.41A {Aeromonas hydrophila} SCOP: d.157.1.1 PDB: 1x8i_A 3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A 3t9m_A 3sw3_A Back     alignment and structure
>1xm8_A Glyoxalase II; structural genomics, protein structure initiative, CESG, AT2G31350, metallo-hydrolase, zinc/iron binuclear center; 1.74A {Arabidopsis thaliana} SCOP: d.157.1.2 PDB: 2q42_A Back     alignment and structure
>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus} Back     alignment and structure
>1ztc_A Hypothetical protein TM0894; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, hydrolase; HET: MSE; 2.10A {Thermotoga maritima} SCOP: d.157.1.11 Back     alignment and structure
>1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase inhibitor, succinic acid inhibitor, I metallo-beta-lactamase, hydrolase; HET: BDS; 1.80A {Pseudomonas aeruginosa} SCOP: d.157.1.1 PDB: 1dd6_A* 1vgn_A* 2doo_A* 1wup_A 1wuo_A 1jje_A* 1ddk_A Back     alignment and structure
>3q6v_A Beta-lactamase; metalloenzyme, alpha-beta, hydrolase; 1.37A {Serratia fonticola} PDB: 3sd9_A Back     alignment and structure
>2y8b_A Metallo-B-lactamase; hydrolase, cephalosporins, antibiotic recognition; 1.70A {Pseudomonas aeruginosa} PDB: 2y8a_A 2y87_A 2yz3_A* 2whg_A* 2wrs_A* 1ko3_A 1ko2_A Back     alignment and structure
>2p18_A Glyoxalase II; metalloprotein, beta sandwich, alpha-helical domain, hydrola; HET: SPD; 1.80A {Leishmania infantum} PDB: 2p1e_A* Back     alignment and structure
>2p97_A Hypothetical protein; putative metal-dependent hydrolase, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.157.1.12 Back     alignment and structure
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa} Back     alignment and structure
>1qh5_A Glyoxalase II, protein (hydroxyacylglutathione hydrolase); metallo-hydrolase; HET: GSH GBP; 1.45A {Homo sapiens} SCOP: d.157.1.2 PDB: 1qh3_A* Back     alignment and structure
>4eyb_A Beta-lactamase NDM-1; metallo beta lactamase, antibiotic, hydrolase-antibiotic COM; HET: 0WO; 1.16A {Klebsiella pneumoniae} PDB: 4ey2_A* 4eyf_A* 4exy_A 4exs_B 4eyl_A* 3spu_A 3q6x_A* 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A Back     alignment and structure
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A* Back     alignment and structure
>3h3e_A Uncharacterized protein TM1679; structural genomics, surface entropy reduction, ISFI, beta- lactamase superfamily, PSI-2; 2.75A {Thermotoga maritima} Back     alignment and structure
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP} Back     alignment and structure
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 355
d1vjna_209 d.157.1.4 (A:) Hypothetical protein TM0207 {Thermo 1e-04
>d1vjna_ d.157.1.4 (A:) Hypothetical protein TM0207 {Thermotoga maritima [TaxId: 2336]} Length = 209 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Hypothetical protein TM0207
domain: Hypothetical protein TM0207
species: Thermotoga maritima [TaxId: 2336]

 Score = 40.6 bits (94), Expect = 1e-04
 Identities = 39/273 (14%), Positives = 77/273 (28%), Gaps = 75/273 (27%)

Query: 80  KLTYLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQIVLIGMKTLVQL 139
           K+T+     +  +++G  ++ DP           +    G                    
Sbjct: 3   KITWFGHACFALEMEGKTIVTDP-----------FDESVGYPIPN--------------- 36

Query: 140 SDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVIATPNAKTLLDPLFQNVTYVEPGQ 199
                 D +  +    DH     +K   ++            K      F + ++     
Sbjct: 37  ---VTADVVTESHQHFDHNAHHLVKGNFRVIDRPGAYTVNGVKIKGVETFHDPSH----- 88

Query: 200 SSEIEGRNGSKLRVKATAGPVLGPPWQRPENGYLVNSSQGQLTLYYEPHCVYN--QNFLE 257
                                     +R +N   V   +G    +              E
Sbjct: 89  ------------------------GRERGKNIVFVFEGEGIKVCHLGDLGHVLTPAQVEE 124

Query: 258 KERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKFIVPMKNGDLDSKGFLASIIQS 317
               D+++ PV       +T+  G ++A ++A LL+AK I+PM       K  L      
Sbjct: 125 IGEIDVLLVPVG----GTYTI--GPKEAKEVADLLNAKVIIPMHYKTKYLKFNL------ 172

Query: 318 EGTVESFKELL--SKELPDAQLLEPTPGEPLEI 348
              V+ F +L    + + +   L   P E   +
Sbjct: 173 -LPVDDFLKLFDSYERVGNILELFEKPKERKVV 204

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query355
d1vjna_209 Hypothetical protein TM0207 {Thermotoga maritima [ 100.0
d1zkpa1244 Hypothetical protein BA1088 (BAS1016) {Bacillus an 99.93
d1y44a1307 Ribonuclease Z (RNase Z) {Bacillus subtilis [TaxId 99.77
d2cbna1305 Ribonuclease Z (RNase Z) {Escherichia coli [TaxId: 99.75
d2e7ya1280 Ribonuclease Z (RNase Z) {Thermotoga maritima [Tax 99.62
d2dkfa1 431 Putative RNA-degradation protein TTHA0252 {Thermus 99.57
d1xtoa_304 Coenzyme PQQ synthesis protein B, PqqB {Pseudomona 99.53
d2i7ta1 451 Cleavage and polyadenylation specificity factor su 99.34
d2i7xa1 514 Cleavage factor two protein 2, CFT2 {Baker's yeast 99.29
d2az4a1183 Hypothetical protein EF2904 {Enterococcus faecalis 99.26
d2aioa1266 Zn metallo-beta-lactamase {Xanthomonas maltophilia 99.21
d1k07a_262 Zn metallo-beta-lactamase {Fluoribacter gormanii, 99.17
d1ycga2249 Nitric oxide reductase N-terminal domain {Moorella 99.15
d2gmna1264 Zn metallo-beta-lactamase {Bradyrhizobium japonicu 99.13
d1e5da2249 Rubredoxin oxygen:oxidoreductase (ROO), N-terminal 99.07
d1vmea2250 ROO-like flavoprotein TM0755, N-terminal domain {T 98.99
d1ztca1207 Hypothetical protein TM0894 {Thermotoga maritima [ 98.93
d1p9ea_294 Methyl parathion hydrolase {Pseudomonas sp. WBC-3 98.92
d2q0ia1298 Quinolone signal response protein PqsE {Pseudomona 98.87
d1m2xa_219 Zn metallo-beta-lactamase {Chryseobacterium mening 98.85
d1znba_230 Zn metallo-beta-lactamase {Bacteroides fragilis [T 98.75
d1wraa1305 Teichoic acid phosphorylcholine esterase Pce (LytD 98.73
d1ko3a_230 Zn metallo-beta-lactamase {Pseudomonas aeruginosa, 98.67
d2p97a1200 Hypothetical protein Ava3068 {Anabaena variabilis 98.65
d1qh5a_260 Glyoxalase II (hydroxyacylglutathione hydrolase) { 98.64
d1jjta_220 Zn metallo-beta-lactamase {Pseudomonas aeruginosa, 98.58
d1mqoa_221 Zn metallo-beta-lactamase {Bacillus cereus [TaxId: 98.54
d1xm8a_254 Glyoxalase II (hydroxyacylglutathione hydrolase) { 98.5
d2qeda1251 Glyoxalase II (hydroxyacylglutathione hydrolase) { 98.36
d1x8ha_228 Zn metallo-beta-lactamase {Aeromonas hydrophila, C 98.3
d2cfua2 505 Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI 98.04
d2i7xa1514 Cleavage factor two protein 2, CFT2 {Baker's yeast 91.9
d2i7ta1451 Cleavage and polyadenylation specificity factor su 91.76
>d1vjna_ d.157.1.4 (A:) Hypothetical protein TM0207 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Hypothetical protein TM0207
domain: Hypothetical protein TM0207
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=6.2e-34  Score=253.68  Aligned_cols=180  Identities=16%  Similarity=0.219  Sum_probs=132.9

Q ss_pred             ceEEEEecCcEEEEEeCCeEEEEccccCCCCCCCcccccccCccccchhhhhhhccccCCCCCCCCCcCEEEecCCCCCC
Q 018490           78 VFKLTYLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQIVLIGMKTLVQLSDLPQVDCLLITQSLDDH  157 (355)
Q Consensus        78 ~~~itwlGhss~li~~~g~~iLiDP~~sg~~~~p~~~~~~g~~~r~~~~~~~~~g~~~~~~~~~lp~iD~VlISH~H~DH  157 (355)
                      .|+|||+|||||+|+++|++|||||+++. ...              +             ..++ ++|+|||||.|+||
T Consensus         1 ~MkItwlGhs~~lIe~~g~~iliDP~~~~-~~~--------------~-------------~~~~-~~D~VliSH~H~DH   51 (209)
T d1vjna_           1 HMKITWFGHACFALEMEGKTIVTDPFDES-VGY--------------P-------------IPNV-TADVVTESHQHFDH   51 (209)
T ss_dssp             CEEEEEEETTEEEEEETTEEEEESCCC--------------------C-------------CCCC-BCSEEECSSCC---
T ss_pred             CeEEEEecccEEEEEECCEEEEECCCCCc-cCC--------------C-------------CccC-cCCEEEECCCCCCc
Confidence            38999999999999999999999997753 110              0             1222 57999999999999


Q ss_pred             CChhhHHHhhhcCCCceEEEcCChHHHHhhcCCceEEcCCCceEEeCcccCCceEEEEEecCccCC-C-CCCCccEEEEE
Q 018490          158 CHLKTLKPLSKMSPNLKVIATPNAKTLLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGP-P-WQRPENGYLVN  235 (355)
Q Consensus       158 ld~~tl~~l~~~~~~~~v~~~~~~~~~l~~~~~~v~~l~~~e~~~l~~~~~~~l~i~~~pa~~~g~-~-~~~~~~g~~i~  235 (355)
                      ++...+    +                     .+...++++++++++     +++|+++|+.|... + ..+.++||+|+
T Consensus        52 ~~~~~~----~---------------------~~~~~~~~~g~~~~~-----~~~i~~v~a~h~~~~~~~~~~~~~~~i~  101 (209)
T d1vjna_          52 NAHHLV----K---------------------GNFRVIDRPGAYTVN-----GVKIKGVETFHDPSHGRERGKNIVFVFE  101 (209)
T ss_dssp             CGGGGC----B---------------------SSCEEECSSEEEEET-----TEEEEEEEEEEC-------CEEEEEEEE
T ss_pred             Cchhhc----c---------------------cccccccCcCcEecC-----CceeeeeeeeecCCCCccCCcceEEEEE
Confidence            743321    1                     112345667788898     89999999986532 1 12236799999


Q ss_pred             ecCCceeEEEcCCCCCCccccc---ccCCcEEEEccccccCCCceeccCHHHHHHHHHHcCCCEEEEeccCCcccccccc
Q 018490          236 SSQGQLTLYYEPHCVYNQNFLE---KERSDIIITPVIKQLLPKFTLVSGQEDAVKLAKLLHAKFIVPMKNGDLDSKGFLA  312 (355)
Q Consensus       236 ~~~~~~~i~~sGDt~~~~~~~~---~~~~Dl~~l~~g~~~~~~~~~h~~~~ea~~~~~~l~~k~~ip~H~~~f~~~g~l~  312 (355)
                      .+  +.+|||+|||+|...+.+   .+++|++++|+|+    .  .||+++||++++++++||++|||||++|.    +.
T Consensus       102 ~~--g~~i~~~GDt~~~~~~~~~~~~~~~Dva~lpigg----~--~~m~~~ea~~~~~~l~pk~viP~H~~t~~----~~  169 (209)
T d1vjna_         102 GE--GIKVCHLGDLGHVLTPAQVEEIGEIDVLLVPVGG----T--YTIGPKEAKEVADLLNAKVIIPMHYKTKY----LK  169 (209)
T ss_dssp             ET--TEEEEECTTCCSCCCHHHHHHHCCCSEEEEECCS----S--SSCCHHHHHHHHHHTTCSEEEEESCCCSS----CC
T ss_pred             cC--CcEEEEeCCccCCCCHHHHhhcCCceEEEEecCC----c--cccCHHHHHHHHHHhCCCEEEEeccCCcc----cc
Confidence            98  789999999999876654   3599999999987    2  37899999999999999999999999987    33


Q ss_pred             ccccccCCHHHHHHHHHhc
Q 018490          313 SIIQSEGTVESFKELLSKE  331 (355)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~  331 (355)
                      .   ..+++++|.+.+++.
T Consensus       170 ~---~~~~~~~f~~~~~~~  185 (209)
T d1vjna_         170 F---NLLPVDDFLKLFDSY  185 (209)
T ss_dssp             T---TCCCTHHHHTTSSCC
T ss_pred             c---CcCCHHHHHHHhhhh
Confidence            2   257888888876643
>d1zkpa1 d.157.1.9 (A:1-244) Hypothetical protein BA1088 (BAS1016) {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d1y44a1 d.157.1.7 (A:1-307) Ribonuclease Z (RNase Z) {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2cbna1 d.157.1.7 (A:1-305) Ribonuclease Z (RNase Z) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2e7ya1 d.157.1.7 (A:1-280) Ribonuclease Z (RNase Z) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein TTHA0252 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1xtoa_ d.157.1.6 (A:) Coenzyme PQQ synthesis protein B, PqqB {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation specificity factor subunit 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein 2, CFT2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2az4a1 d.157.1.10 (A:56-238) Hypothetical protein EF2904 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d2aioa1 d.157.1.1 (A:23-311) Zn metallo-beta-lactamase {Xanthomonas maltophilia [TaxId: 40324]} Back     information, alignment and structure
>d1k07a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Fluoribacter gormanii, (Legionella gormanii) FEZ-1 [TaxId: 464]} Back     information, alignment and structure
>d1ycga2 d.157.1.3 (A:2-250) Nitric oxide reductase N-terminal domain {Moorella thermoacetica [TaxId: 1525]} Back     information, alignment and structure
>d2gmna1 d.157.1.1 (A:29-292) Zn metallo-beta-lactamase {Bradyrhizobium japonicum [TaxId: 375]} Back     information, alignment and structure
>d1e5da2 d.157.1.3 (A:2-250) Rubredoxin oxygen:oxidoreductase (ROO), N-terminal domain {Desulfovibrio gigas [TaxId: 879]} Back     information, alignment and structure
>d1vmea2 d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ztca1 d.157.1.11 (A:1-207) Hypothetical protein TM0894 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1p9ea_ d.157.1.5 (A:) Methyl parathion hydrolase {Pseudomonas sp. WBC-3 [TaxId: 165468]} Back     information, alignment and structure
>d2q0ia1 d.157.1.14 (A:1-298) Quinolone signal response protein PqsE {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1m2xa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Chryseobacterium meningosepticum, carbapenemase BLAB-1 [TaxId: 238]} Back     information, alignment and structure
>d1znba_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacteroides fragilis [TaxId: 817]} Back     information, alignment and structure
>d1wraa1 d.157.1.8 (A:30-334) Teichoic acid phosphorylcholine esterase Pce (LytD), N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1ko3a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas aeruginosa, VIM-2 [TaxId: 287]} Back     information, alignment and structure
>d2p97a1 d.157.1.12 (A:1-200) Hypothetical protein Ava3068 {Anabaena variabilis [TaxId: 1172]} Back     information, alignment and structure
>d1qh5a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jjta_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas aeruginosa, IMP-1 [TaxId: 287]} Back     information, alignment and structure
>d1mqoa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1xm8a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2qeda1 d.157.1.2 (A:1-251) Glyoxalase II (hydroxyacylglutathione hydrolase) {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1x8ha_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Aeromonas hydrophila, CphA [TaxId: 644]} Back     information, alignment and structure
>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein 2, CFT2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation specificity factor subunit 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure