Citrus Sinensis ID: 018493

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-----
Protein Sequence
MMRMKTSKTTGPSPMATMNGGSAEAAAHEWELRPGGMLVQKRNPDSDRTSAPPPTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVEDPISQEKRLLEMRKNAKLEKASKSISEISLEVDRLAGQVSALESIITKGGKVAEKDVLNLIELLMNQLLKLDGIMADGDVKLQRKMQVRRVQKYVETLDMLKIKNSMPSSNKHHSNGQRLAPIQEQPQQQPPRHSNGHVLASIQEQQARHSFENLSIQQQYHQQQQQQQQQQSTTHSTSGPVVVTTKWETFDSSPGLMQVSSSSTSTFNPATNNNNNSSGPPKFPWEFFD
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccEEccccEEEEEEccccccccccccEEEEEEEEccEEEEEEEcccccHHHHHHHHcccccccccccEEEEccccccccccccccccccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccEEEEccccEEEEEcccccccccccccEEEEEEEEccEEEEEEEcccccHHHHHHHHHccccccHHHcEEEEcccccccHHHHHHcccccccEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccEEccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccHccHcccccccccccccccEEEEEEEEcccccccccccccccccccccccccccccccccccccHccc
Coil and Loop (DISEMBL)
mmrmktskttgpspmatmnggsaeaaahewelrpggmlvqkrnpdsdrtsappptirVRVKYGSIYHEIHINSQATFGELKklltgptglhhedqkliykdkerdsKAFLDvvgvkdksklvlveDPISQEKRLLEMRKNAKLEKASKSISEISLEVDRLAGQVSALESIITKGGKVAEKDVLNLIELLMNQLLKLDGIMADGDVKLQRKMQVRRVQKYVETLDMLKiknsmpssnkhhsngqrlapiqeqpqqqpprhsnghVLASIQEQQARHSFENLSIQQQYHQQQQQQQQqqstthstsgpvvvttkwetfdsspglmqvsssststfnpatnnnnnssgppkfpweffd
Flexible Loop (DISEMBL)
mmrmktskttgpspmatmNGGSAEAAAHEWELRPGGmlvqkrnpdsdrtsappptiRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKliykdkerdSKAFLdvvgvkdksklvlvedpisqekrlLEMRKnaklekasksiseislevdrLAGQVSALESIITKGGKVAEKDVLNLIELLMNQLLKLDGIMADGDVKLQRKMQVRRVQKYVETLDMLKIKNSMPSSNKHHSNGQRLAPIQEQPQQQPPRHSNGHVLASIQEQQARHSFENLSIQQQYHQQQQQQQQQQSTTHSTSGPVVVTTKWETFDSSPGLMQVSSSSTStfnpatnnnnnssgppkfpweffd
Low Complexity Region (SEG)
MMRMKTSKTTGPSPMATMNGGSAEAAAHEWELRPGGMLVQKRNPDSDRTSAPPPTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVEDPISQEKRLLEMRKNAKLEKASKSISEISLEVDRLAGQVSALESIITKGGKVAEKDVlnliellmnqllklDGIMADGDVKLQRKMQVRRVQKYVETLDMLKIKNSMPSSNKHHSNGQRLApiqeqpqqqppRHSNGHVLASIQEQQARHSFENLSIqqqyhqqqqqqqqqqSTTHSTSGPVVVTTKWETFDSSPGLMQVsssststfnpatnnnnnssGPPKFPWEFFD
Disordered region (IsUnstruct)
*******************************************************IRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE*****************************LEVDRLAGQVSALESIITKGGKVAEKDVLNLIELLMNQLLKLDGIMADGDVKLQRKMQVRRVQKYVETLDMLK********************************************************************************************************************************
Disordered Region (DISOPRED)
*******************************LRPGGML*****************IRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVL****************************EISLEVDRLAGQVS*************EKDVLNLIELLMNQLLKLDGIMAD***********RRVQKYVETLDM*************************************************************************************TKWETF********************************FPWEFFD
Disordered Region (DISEMBL)
*************PMATMNGGSAEAAAHEWELRPGGMLVQ**********APPPTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVEDPISQEKRLLEMRKNAKLEKASKSISEISLEVDRLAGQVSALESIITKGGKVAEKDVLNLIELLMNQLLKLDGIMADGDVKLQRKMQVRRVQKYVETLDMLKIKNS******************************GHVLASIQEQQARHSFENL*************************PVVVTTKWETFD****************NPATNNNNNSSGPPKFPWEFFD
Disordered Region (DISPRO)
**************************AHEWELRPGGMLVQKRNPDSDRTSAPPPTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVEDPISQEKRLLEMRKNAKLEKASKSISEISLEVDRLAGQVSALESIITKGGKVAEKDVLNLIELLMNQLLKLDGIMADGDVKLQRKMQVRRVQKYVETLDMLKIKN*************************************************************************SGPVVVTTKWETFDSSPGLM************************KFPW*FF*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMRMKTSKTTGPSPMATMNGGSAEAAAHEWELRPGGMLVQKRNPDSDRTSAPPPTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVEDPISQEKRLLEMRKNAKLEKASKSISEISLEVDRLAGQVSALESIITKGGKVAEKDVLNLIELLMNQLLKLDGIMADGDVKLQRKMQVRRVQKYVETLDMLKIKNSMPSSNKHHSNGQRLAPIQEQPQQQPPRHSNGHVLASIQEQQARHSFENLSIQQQYHQQQQQQQQQQSTTHSTSGPVVVTTKWETFDSSPGLMQVSSSSTSTFNPATNNNNNSSGPPKFPWEFFD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	355	2.2.26 [Sep-21-2011]
Q0WUQ1	342	BAG family molecular chap	yes	no	0.845	0.877	0.598	1e-95
Q9LYP4	303	BAG family molecular chap	no	no	0.850	0.996	0.528	1e-92
Q0WPX7	285	BAG family molecular chap	no	no	0.802	1.0	0.507	2e-87
Q8RX71	269	BAG family molecular chap	no	no	0.574	0.758	0.423	1e-39

>sp|Q0WUQ1|BAG1_ARATH BAG family molecular chaperone regulator 1 OS=Arabidopsis thaliana GN=BAG1 PE=1 SV=1

 Score =  350 bits (897), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 198/331 (59%), Positives = 247/331 (74%), Gaps = 31/331 (9%)

Query: 29  EWELRPGGMLVQKRNPDSDRTSAPPPT-IRVRVKYGSIYHEIHINSQATFGELKKLLTGP 87
           + E+RPGGMLVQKRNPD D    PPP  IRVR+KYG++YHEI+I+ QA+FGELKK+LTGP
Sbjct: 39  DLEIRPGGMLVQKRNPDLDPVGPPPPPMIRVRIKYGAVYHEINISPQASFGELKKMLTGP 98

Query: 88  TGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVEDPISQEKRLLEMRKNAKLEKAS 147
           TG+HH+DQKL+YKDKERDSKAFLDV GVKDKSK+VL+EDP+SQEKR LEMRK AK EKAS
Sbjct: 99  TGIHHQDQKLMYKDKERDSKAFLDVSGVKDKSKMVLIEDPLSQEKRFLEMRKIAKTEKAS 158

Query: 148 KSISEISLEVDRLAGQVSALESIITKGGKVAEKDVLNLIELLMNQLLKLDGIMADGDVKL 207
           K+IS+ISLEVDRL G+VSA E +  KGGK+AEKD++ +IELLMN+L+KLD I+A+GDVKL
Sbjct: 159 KAISDISLEVDRLGGRVSAFEMVTKKGGKIAEKDLVTVIELLMNELIKLDAIVAEGDVKL 218

Query: 208 QRKMQVRRVQKYVETLDMLKIKNSMPSS-NKHHSNGQRLAPIQEQPQQQPPRHSNGHVLA 266
           QRKMQV+RVQ YVETLD LK+KNSM +   K  S  QRLAPIQE        H+N     
Sbjct: 219 QRKMQVKRVQNYVETLDALKVKNSMANGQQKQSSTAQRLAPIQE--------HNN----E 266

Query: 267 SIQEQQARHSFENLSIQQQYHQQQQQQQQQQSTTHSTSGPVVV--TTKWETFDSSPGLMQ 324
             QEQ+   S  ++ IQ +  +Q+ +++ +    +S  GP V+  + KWETFD  P    
Sbjct: 267 ERQEQKPIQSLMDMPIQYKEKKQEIEEEPR----NSGEGPFVLDSSAKWETFDHHP---- 318

Query: 325 VSSSSTSTFNPATNNNNNSSGPPKFPWEFFD 355
           V+  S++T   A NN    + PP+F WEFFD
Sbjct: 319 VTPLSSTT---AKNN----AIPPRFNWEFFD 342

Co-chaperone that regulates diverse cellular pathways, such as programmed cell death and stress responses.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYP4|BAG3_ARATH BAG family molecular chaperone regulator 3 OS=Arabidopsis thaliana GN=BAG3 PE=1 SV=1

 Score =  340 bits (872), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 188/356 (52%), Positives = 241/356 (67%), Gaps = 54/356 (15%)

Query: 1   MMRMKTSKTTGPSPMATMNGGSAEAAAHEWELRPGGMLVQKRNPDSDRTSAPPPTIRVRV 60
           MM+M     TG SP + + GG++    +EWE RPGGM+VQ+R   +D+ S  P   RVRV
Sbjct: 1   MMKM----NTGTSP-SVIGGGTS---GNEWESRPGGMVVQRR---TDQNSDVPRVFRVRV 49

Query: 61  KYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSK 120
           KYGS+YHEI+INSQ++FGELKK+L+   GLHHED K++YKDKERDSK FLD+ GVKD+SK
Sbjct: 50  KYGSVYHEININSQSSFGELKKMLSDQVGLHHEDMKVLYKDKERDSKMFLDLCGVKDRSK 109

Query: 121 LVLVEDPISQEKRLLEMRKNAKLEKASKSISEISLEVDRLAGQVSALESIITKGGKVAEK 180
           LV+ EDPISQEKRLL  RKNA +EKASKSIS+IS EVDRLAGQVSA E++I KGGKV EK
Sbjct: 110 LVVKEDPISQEKRLLAKRKNAAIEKASKSISDISFEVDRLAGQVSAFETVINKGGKVEEK 169

Query: 181 DVLNLIELLMNQLLKLDGIMADGDVKLQRKMQVRRVQKYVETLDMLKIKNSMPSSNKHHS 240
            ++NLIE+LMNQLL+LD I+ADGDVKL RKMQV+RVQKYVE LD+LK+KNS      + S
Sbjct: 170 SLVNLIEMLMNQLLRLDAIIADGDVKLMRKMQVQRVQKYVEALDLLKVKNSAKKVEVNKS 229

Query: 241 NGQRLAPIQEQPQQQPPRHSNGHVLASIQEQQARHSFENLSIQQQYHQQQQQQQQQQSTT 300
                  ++ +PQ Q           +  EQ+   SF           ++++++ + S  
Sbjct: 230 -------VRHKPQTQ-----------TRFEQRDLLSF----------VEEEEEEPRNSNA 261

Query: 301 HSTSG-PVVVTTKWETFDSSPGLMQVSSSSTSTFNPATNNNNNSSGPPKFPWEFFD 355
            S+SG P VV +KWE FDS+      ++ +  T  P          PP+F WEFFD
Sbjct: 262 SSSSGTPAVVASKWEMFDSAS-----TAKAAETVKPV---------PPRFKWEFFD 303

Co-chaperone that regulates diverse cellular pathways, such as programmed cell death and stress responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WPX7|BAG2_ARATH BAG family molecular chaperone regulator 2 OS=Arabidopsis thaliana GN=BAG2 PE=2 SV=1

 Score =  322 bits (825), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 173/341 (50%), Positives = 226/341 (66%), Gaps = 56/341 (16%)

Query: 15  MATMNGGSAEAAAHEWELRPGGMLVQKRNPDSDRTSAPPPTIRVRVKYGSIYHEIHINSQ 74
           M  M+ G+  +   E ELRPGGM+VQKR   +D +S+ P  IRVRVKYGS++HEI INSQ
Sbjct: 1   MMKMSIGTTTSGDGEMELRPGGMVVQKR---TDHSSSVPRGIRVRVKYGSVHHEISINSQ 57

Query: 75  ATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVEDPISQEKRL 134
           +TFGELKK+L+G TG+HH+D ++IYKDKERDSK FLD+ GVKD+SKL+L+EDPISQEKRL
Sbjct: 58  STFGELKKILSGATGVHHQDMQIIYKDKERDSKMFLDLSGVKDRSKLILIEDPISQEKRL 117

Query: 135 LEMRKNAKLEKASKSISEISLEVDRLAGQVSALESIITKGGKVAEKDVLNLIELLMNQLL 194
           LE+RK A  EK+SK+IS+IS +V+RLAGQ+SA +++I KGGKV EK++ NL+E+LMNQL+
Sbjct: 118 LELRKIATKEKSSKAISDISFQVERLAGQLSAFDTVIGKGGKVEEKNLENLMEMLMNQLV 177

Query: 195 KLDGIMADGDVKLQRKMQVRRVQKYVETLDMLKIKNSMPSSNKHHSNGQRLAPIQEQPQQ 254
           KLD I  DGDVKL++KMQ  R+ KYVE LD+LKIKNS                   QPQ 
Sbjct: 178 KLDAISGDGDVKLKKKMQEERLHKYVEALDLLKIKNS------------------RQPQT 219

Query: 255 QPPRHSNGHVLASIQEQQARHSFENLSIQQQYHQQQQQQQQQQSTTHSTSGPVVVTTKWE 314
           +P        + +  E+ +R                      + T  S+S PV++TT+WE
Sbjct: 220 KPKPQYKEREMLTFYEEASR----------------------KPTASSSSPPVIITTRWE 257

Query: 315 TFDSSPGLMQVSSSSTSTFNPATNNNNNSSGPPKFPWEFFD 355
           TFDS       SS+ST+T  P    +      PKF WE F+
Sbjct: 258 TFDS-------SSASTATLQPVRPVH------PKFKWELFN 285

Co-chaperone that regulates diverse cellular pathways, such as programmed cell death and stress responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RX71|BAG4_ARATH BAG family molecular chaperone regulator 4 OS=Arabidopsis thaliana GN=BAG4 PE=1 SV=1

 Score =  164 bits (415), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 92/217 (42%), Positives = 135/217 (62%), Gaps = 13/217 (5%)

Query: 29  EWELRPGGMLVQKRN------------PDSDRTSAPPPTIRVRVKYGSIYHEIHINSQAT 76
           EWE+RPGGMLVQ+R+            PDS  ++A   TIR+ V +GS +H++HI++ AT
Sbjct: 10  EWEVRPGGMLVQRRDDAASSDHKPLQDPDS-ASAAFAQTIRITVSHGSSHHDLHISAHAT 68

Query: 77  FGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVEDPISQEKRLLE 136
           FG++KK L   TGL   + K++++  ERD    L   GVKD SKLV+V +  ++      
Sbjct: 69  FGDVKKALVQKTGLEASELKILFRGVERDDAEQLQAAGVKDASKLVVVVEDTNKRVEQQP 128

Query: 137 MRKNAKLEKASKSISEISLEVDRLAGQVSALESIITKGGKVAEKDVLNLIELLMNQLLKL 196
                ++EKA  +++ ++ EVD+L+ +V ALE  +  G +VA ++     ELLM QLLKL
Sbjct: 129 PVVTKEMEKAIAAVNAVTGEVDKLSDRVVALEVAVNGGTQVAVREFDMAAELLMRQLLKL 188

Query: 197 DGIMADGDVKLQRKMQVRRVQKYVETLDMLKIKNSMP 233
           DGI A+GD K+QRK +VRR+Q   E +D LK + S P
Sbjct: 189 DGIEAEGDAKVQRKAEVRRIQNLQEAVDKLKARCSNP 225

Co-chaperone that regulates diverse cellular pathways, such as programmed cell death and stress responses.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	355
224134647	349	predicted protein [Populus trichocarpa]	0.921	0.936	0.676	1e-135
255539551	353	protein binding protein, putative [Ricin	0.935	0.940	0.704	1e-130
224122484	308	predicted protein [Populus trichocarpa]	0.836	0.964	0.685	1e-120
225455457	343	PREDICTED: uncharacterized protein LOC10	0.926	0.959	0.647	1e-118
147799221	343	hypothetical protein VITISV_023247 [Viti	0.926	0.959	0.647	1e-118
321154014	338	BCL-2-associated athanogene [Malus hupeh	0.923	0.970	0.671	1e-117
363814402	337	uncharacterized protein LOC100790513 [Gl	0.873	0.919	0.677	1e-115
297741106	316	unnamed protein product [Vitis vinifera]	0.878	0.987	0.623	1e-114
356529292	339	PREDICTED: uncharacterized protein LOC10	0.898	0.941	0.661	1e-111
84468416	347	hypothetical protein [Trifolium pratense	0.912	0.933	0.646	1e-108

>gi|224134647|ref|XP_002321874.1| predicted protein [Populus trichocarpa] gi|222868870|gb|EEF06001.1| predicted protein [Populus trichocarpa]

 Score =  486 bits (1250), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 255/377 (67%), Positives = 291/377 (77%), Gaps = 50/377 (13%)

Query: 1   MMRMKTSKTTGPSPMATMNGGSAEAAAHEWELRPGGMLVQKRNPDSDRTSAPPPTIRVRV 60
           MMRMKT+KTTG S M   +  +   A  EWE+RPGGMLVQKR+PDSDRTS PPPTIRV+V
Sbjct: 1   MMRMKTAKTTGLSQMNGGS--AGGGAGGEWEVRPGGMLVQKRSPDSDRTSIPPPTIRVKV 58

Query: 61  KYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSK 120
           KYGS +HEI+I+SQATFGELKK+L+GPTGLHH+DQKLIYKDKERDSKAFLD+ GVKDKSK
Sbjct: 59  KYGSTHHEINISSQATFGELKKMLSGPTGLHHQDQKLIYKDKERDSKAFLDISGVKDKSK 118

Query: 121 LVLVEDPISQEKRLLEMRKNAKLEKASKSISEISLEVDRLAGQVSALESIITKGGKVAEK 180
           +VLVEDPISQEKR LE+RKNAK+EKASKSISEIS EVDRLAGQVSALES+IT+GGKVAEK
Sbjct: 119 MVLVEDPISQEKRFLELRKNAKMEKASKSISEISFEVDRLAGQVSALESVITRGGKVAEK 178

Query: 181 DVLNLIELLMNQLLKLDGIMADGDVKLQRKMQVRRVQKYVETLDMLKIKNS--------- 231
            VLNLIELLMNQLLKLDGIM DGDVKLQRKMQV+RVQ+YVETLDMLKIKNS         
Sbjct: 179 TVLNLIELLMNQLLKLDGIMVDGDVKLQRKMQVKRVQRYVETLDMLKIKNSMANENGEQI 238

Query: 232 ---MPSSNKH----------HSNGQRLAPIQEQPQQQPPRHSNGHVLASIQEQQARHSFE 278
              MP+SN +          HSNGQ+LAPIQE    + PR++NGH L  I+E+Q RHSF+
Sbjct: 239 KNPMPNSNGNHAPTQQQHHKHSNGQKLAPIQE----RQPRYTNGHSLIPIEEEQPRHSFD 294

Query: 279 NLSIQQQYHQQQQQQQQQQSTTHSTSGPVVVTTKWETFDSSPGLMQVSSSSTSTFNPATN 338
           NL I           QQ+Q   HS SG VVVTT+WETFD +P L+ V S+STST      
Sbjct: 295 NLPI----------HQQEQPPRHSASGAVVVTTQWETFDCTPALVPVPSTSTSTHQ---- 340

Query: 339 NNNNSSGPPKFPWEFFD 355
                   PKFPW+FF+
Sbjct: 341 --------PKFPWDFFN 349

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539551|ref|XP_002510840.1| protein binding protein, putative [Ricinus communis] gi|223549955|gb|EEF51442.1| protein binding protein, putative [Ricinus communis]

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 265/376 (70%), Positives = 289/376 (76%), Gaps = 44/376 (11%)

Query: 1   MMRMKTSKTTGPSPM---------ATMNGGSAEAAAHEWELRPGGMLVQKRNPDSDRTSA 51
           MMRM T K TG S M           + GG    +  EWELRPGGMLVQKR PDSDR+S 
Sbjct: 1   MMRMNT-KPTGLSHMNGGSTAGVGVGVGGGRGGESGSEWELRPGGMLVQKRTPDSDRSSI 59

Query: 52  PPPTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLD 111
            PPTIRVRVKYGS YHE+ I+SQATFGELKK+LTGPTGL+HEDQKLI+KDKERDSKAFLD
Sbjct: 60  SPPTIRVRVKYGSTYHELSISSQATFGELKKMLTGPTGLNHEDQKLIFKDKERDSKAFLD 119

Query: 112 VVGVKDKSKLVLVEDPISQEKRLLEMRKNAKLEKASKSISEISLEVDRLAGQVSALESII 171
           + GVKDKSK+VLVEDPISQEKR L+MRKNAK+EKASKSISEISLEVDRLAGQVSALESII
Sbjct: 120 ISGVKDKSKIVLVEDPISQEKRFLQMRKNAKMEKASKSISEISLEVDRLAGQVSALESII 179

Query: 172 TKGGKVAEKDVLNLIELLMNQLLKLDGIMADGDVKLQRKMQVRRVQKYVETLDMLKIKNS 231
           TKGGKVAEK VLNLIELLMNQLLKLDGIMADGDVKLQRKMQVRRVQKYVETLDMLK+KNS
Sbjct: 180 TKGGKVAEKTVLNLIELLMNQLLKLDGIMADGDVKLQRKMQVRRVQKYVETLDMLKLKNS 239

Query: 232 MPSSNKH----------HSNGQRLAPIQEQPQQQPPRHSNGHVLASI-QEQQARHSFENL 280
           MP+ N +          HSNGQRLAPIQEQ      R SNG  L  I +E+Q RHS    
Sbjct: 240 MPNGNGNHIPTRQQDLKHSNGQRLAPIQEQQA----RRSNGQSLIPIDEEEQPRHS---- 291

Query: 281 SIQQQYHQQQQQQQQQQSTTHSTSGPVVVTTKWETFDSSPGLMQVSSSSTSTFNPATNNN 340
                         QQQS+ HS +G VVVTT+WETFDS+P L+ V SSS S  NPATN N
Sbjct: 292 ------------PIQQQSSRHSATGAVVVTTQWETFDSTPALLPVPSSSAS--NPATNKN 337

Query: 341 NNSS-GPPKFPWEFFD 355
           NN+S   PKFPW+FFD
Sbjct: 338 NNNSVHQPKFPWDFFD 353

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122484|ref|XP_002318848.1| predicted protein [Populus trichocarpa] gi|222859521|gb|EEE97068.1| predicted protein [Populus trichocarpa]

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 225/328 (68%), Positives = 262/328 (79%), Gaps = 31/328 (9%)

Query: 29  EWELRPGGMLVQKRNPDSDRTSAPPPTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPT 88
           E E+RPGGMLVQKR+PDSDRTS PPPTIR++VKYGS YHEI+I+SQATFGELKK+L+ PT
Sbjct: 11  ELEVRPGGMLVQKRDPDSDRTSIPPPTIRIKVKYGSTYHEINISSQATFGELKKMLSAPT 70

Query: 89  GLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVEDPISQEKRLLEMRKNAKLEKASK 148
           GLHH+DQKLIYKDKERDSKAFLD+ GVKD+SK+VLVEDPISQEKR LEMRKNAK+EKASK
Sbjct: 71  GLHHQDQKLIYKDKERDSKAFLDISGVKDRSKMVLVEDPISQEKRFLEMRKNAKMEKASK 130

Query: 149 SISEISLEVDRLAGQVSALESIITKGGKVAEKDVLNLIELLMNQLLKLDGIMADGDVKLQ 208
            ISEISLEVDRLAGQVSA ES+ITKGGKVAEK VLNLIELLM+QLLKLDGIM DGDVKLQ
Sbjct: 131 FISEISLEVDRLAGQVSAFESVITKGGKVAEKSVLNLIELLMSQLLKLDGIMVDGDVKLQ 190

Query: 209 RKMQVRRVQKYVETLDMLKIKNSMPSSNKHHSNGQRLAPIQEQPQQQPPRHSNGHVLASI 268
           RK+QV+RVQKYVETLDMLKIKNSMP+++                Q++ PR++NGH L  I
Sbjct: 191 RKIQVQRVQKYVETLDMLKIKNSMPNASI---------------QKRQPRYTNGHTLIPI 235

Query: 269 QEQQA-RHSFENLSIQQQYHQQQQQQQQQQSTTHSTSGPVVVTTKWETFDSSPGLMQVSS 327
           +E++  RH FE+LSI           QQQQ + HS SG VVVTT+WETFDS+P L  V S
Sbjct: 236 EEEEEQRHPFEHLSI----------HQQQQPSRHSASGEVVVTTQWETFDSTPALEPVPS 285

Query: 328 SSTSTFNPATNNNNNSSGPPKFPWEFFD 355
                 + ++     S+  PKFPW+FF+
Sbjct: 286 -----ISTSSTATKTSAPQPKFPWDFFN 308

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455457|ref|XP_002279827.1| PREDICTED: uncharacterized protein LOC100260667 [Vitis vinifera]

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 239/369 (64%), Positives = 275/369 (74%), Gaps = 40/369 (10%)

Query: 1   MMRMKTSKTTGPSPMATMNGGSA----EAAAHEWELRPGGMLVQKRNPDSDRTSAPPPTI 56
           MMR+K      P+ ++++NGGSA    E+   EWELRPGGMLVQ+R+PDSDR+S P PTI
Sbjct: 1   MMRVKNK----PAGLSSINGGSAGDGGESGPVEWELRPGGMLVQRRDPDSDRSSVPAPTI 56

Query: 57  RVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVK 116
           RVRVK+GSIYHEI+I+SQATFGELKK+L+GPTGLHH+DQKL++KDKERDS A+LD+ GVK
Sbjct: 57  RVRVKFGSIYHEIYISSQATFGELKKMLSGPTGLHHQDQKLLFKDKERDSNAYLDMAGVK 116

Query: 117 DKSKLVLVEDPISQEKRLLEMRKNAKLEKASKSISEISLEVDRLAGQVSALESIITKGGK 176
           D+SK++LVEDPISQEKR LEMR+NAK+EKASKSISEISLEVDRLAGQVSALES+I+KGGK
Sbjct: 117 DRSKILLVEDPISQEKRYLEMRRNAKMEKASKSISEISLEVDRLAGQVSALESVISKGGK 176

Query: 177 VAEKDVLNLIELLMNQLLKLDGIMADGDVKLQRKMQVRRVQKYVETLDMLKIKNSMPSSN 236
           VAEK +LNL ELLMNQL+ LD I+ADGDVKLQRKMQVRRVQKYVETLDMLKIKNS P S+
Sbjct: 177 VAEKVMLNLTELLMNQLINLDSIIADGDVKLQRKMQVRRVQKYVETLDMLKIKNSTPDSD 236

Query: 237 ----------KHHSNGQRLAPIQEQPQQQPPRHSNGHVLASIQEQQARHSFENLSIQQQY 286
                     K  SNGQR       P   PP           Q QQ RHS  +L IQ   
Sbjct: 237 GDQMPMQHQQKRQSNGQR------PPPAAPPLVQ--------QLQQPRHSVAHLPIQ--- 279

Query: 287 HQQQQQQQQQQSTTHSTSGPVVVTTKWETFDSSPGLMQVSSSSTSTFNPATNNNNNSSGP 346
              QQQQQ  Q + HSTSGPVVVTTKWETFDS+     VS+  TS    A  N  +    
Sbjct: 280 -MHQQQQQPPQPSRHSTSGPVVVTTKWETFDSASAPPLVSAPPTSVTTAANINPVH---- 334

Query: 347 PKFPWEFFD 355
           PK  WEFFD
Sbjct: 335 PKLNWEFFD 343

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147799221|emb|CAN63593.1| hypothetical protein VITISV_023247 [Vitis vinifera]

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 239/369 (64%), Positives = 274/369 (74%), Gaps = 40/369 (10%)

Query: 1   MMRMKTSKTTGPSPMATMNGGSA----EAAAHEWELRPGGMLVQKRNPDSDRTSAPPPTI 56
           MMR+K      P  ++++NGGSA    E+   EWELRPGGMLVQ+R+PDSDR+S P PTI
Sbjct: 1   MMRVKNK----PXGLSSINGGSAGDGGESGPVEWELRPGGMLVQRRDPDSDRSSVPAPTI 56

Query: 57  RVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVK 116
           RVRVK+GSIYHEI+I+SQATFGELKK+L+GPTGLHH+DQKL++KDKERDS A+LD+ GVK
Sbjct: 57  RVRVKFGSIYHEIYISSQATFGELKKMLSGPTGLHHQDQKLLFKDKERDSNAYLDMAGVK 116

Query: 117 DKSKLVLVEDPISQEKRLLEMRKNAKLEKASKSISEISLEVDRLAGQVSALESIITKGGK 176
           D+SK++LVEDPISQEKR LEMR+NAK+EKASKSISEISLEVDRLAGQVSALES+I+KGGK
Sbjct: 117 DRSKILLVEDPISQEKRYLEMRRNAKMEKASKSISEISLEVDRLAGQVSALESVISKGGK 176

Query: 177 VAEKDVLNLIELLMNQLLKLDGIMADGDVKLQRKMQVRRVQKYVETLDMLKIKNSMPSSN 236
           VAEK +LNL ELLMNQL+ LD I+ADGDVKLQRKMQVRRVQKYVETLDMLKIKNS P S+
Sbjct: 177 VAEKVMLNLTELLMNQLINLDSIIADGDVKLQRKMQVRRVQKYVETLDMLKIKNSTPDSD 236

Query: 237 ----------KHHSNGQRLAPIQEQPQQQPPRHSNGHVLASIQEQQARHSFENLSIQQQY 286
                     K  SNGQR       P   PP           Q QQ RHS  +L IQ   
Sbjct: 237 GDQMPMQHQQKRQSNGQR------PPPAAPPLVQ--------QLQQPRHSVAHLPIQ--- 279

Query: 287 HQQQQQQQQQQSTTHSTSGPVVVTTKWETFDSSPGLMQVSSSSTSTFNPATNNNNNSSGP 346
              QQQQQ  Q + HSTSGPVVVTTKWETFDS+     VS+  TS    A  N  +    
Sbjct: 280 -MHQQQQQPPQPSRHSTSGPVVVTTKWETFDSASAPPLVSAPPTSVTTAANINPVH---- 334

Query: 347 PKFPWEFFD 355
           PK  WEFFD
Sbjct: 335 PKLNWEFFD 343

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|321154014|gb|ADW66455.1| BCL-2-associated athanogene [Malus hupehensis]

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 245/365 (67%), Positives = 276/365 (75%), Gaps = 37/365 (10%)

Query: 1   MMRMKTSKTTGPSPMATMNGGSAEAAAH----EWELRPGGMLVQKRNPDSDRTSAPPPTI 56
           MMRMKT KTTG S +A +NG S    A     EWELRPGGMLVQKRNPDSDR S PPPTI
Sbjct: 1   MMRMKT-KTTGVS-LAELNGRSGGGGADSGQGEWELRPGGMLVQKRNPDSDRNSVPPPTI 58

Query: 57  RVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVK 116
           RVRVKYGSIYHEI I++Q++FG+LKK+L GPTGLHH+DQKLI+KDKERDSKAFLD+ GVK
Sbjct: 59  RVRVKYGSIYHEISISAQSSFGDLKKMLVGPTGLHHQDQKLIFKDKERDSKAFLDMSGVK 118

Query: 117 DKSKLVLVEDPISQEKRLLEMRKNAKLEKASKSISEISLEVDRLAGQVSALESIITKGGK 176
           D+SK+VLVEDPISQEKR LEMR+NAK+EKASKSISEISLEVDRLAGQVSALESIITKG K
Sbjct: 119 DRSKMVLVEDPISQEKRYLEMRRNAKMEKASKSISEISLEVDRLAGQVSALESIITKGKK 178

Query: 177 VAEKDVLNLIELLMNQLLKLDGIMADGDVKLQRKMQVRRVQKYVETLDMLKIKNSMPSSN 236
           VAE+DVL LIE LMNQLLKLDGIM DGDVKLQRKMQV+RVQKYVETLD+LK KNS PS  
Sbjct: 179 VAEQDVLVLIEQLMNQLLKLDGIMGDGDVKLQRKMQVKRVQKYVETLDVLKAKNSSPS-- 236

Query: 237 KHHSNGQRLAPIQEQPQQQPPRHS------NGHVLASIQEQQARHSFENLSIQQQYHQQQ 290
              SNG ++      P+Q   RHS      NGH +A IQE Q R      S+       Q
Sbjct: 237 ---SNGSQI------PKQVQQRHSDGHSNGNGHRIAPIQEHQPRR-----SVGYSPTHNQ 282

Query: 291 QQQQQQQSTTHSTSGPVVVTTKWETFDSSPGLMQVSSSSTSTFNPATNNNNNSSGPPKFP 350
           Q QQQ+Q +  S SGPVVVTT+WETFDS+P L+  SS S +          N S  P+F 
Sbjct: 283 QLQQQEQPSGQSASGPVVVTTQWETFDSAPALIPASSISKAA---------NQSPYPRFN 333

Query: 351 WEFFD 355
           WE F+
Sbjct: 334 WESFE 338

Source: Malus hupehensis

Species: Malus hupehensis

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363814402|ref|NP_001242839.1| uncharacterized protein LOC100790513 [Glycine max] gi|255641638|gb|ACU21091.1| unknown [Glycine max]

 Score =  419 bits (1077), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 237/350 (67%), Positives = 269/350 (76%), Gaps = 40/350 (11%)

Query: 1   MMRMKTSKTTGPSPMATMNGGSA-----EAAAHEWELRPGGMLVQKRNPDSDRTSAPPPT 55
           MMRMK   ++       MNGG +     E  + EWE+RPGGMLVQ R  DS R  A  PT
Sbjct: 1   MMRMKNISSS------IMNGGGSVGCRSEPGSKEWEMRPGGMLVQMRTADSGRNPALLPT 54

Query: 56  IRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGV 115
           IRV+VK+GSIYHE++I+SQATFGELKK+L+G TGLHHEDQKL YKDKERDSKAFLD+VGV
Sbjct: 55  IRVKVKFGSIYHEVNISSQATFGELKKMLSGLTGLHHEDQKLFYKDKERDSKAFLDIVGV 114

Query: 116 KDKSKLVLVEDPISQEKRLLEMRKNAKLEKASKSISEISLEVDRLAGQVSALESIITKGG 175
           KDKSK+VLVEDPISQEKRLLE RKNAK+EKA+KSISEISLEVDRLAG+VSA ESII+KGG
Sbjct: 115 KDKSKIVLVEDPISQEKRLLERRKNAKMEKAAKSISEISLEVDRLAGRVSAFESIISKGG 174

Query: 176 KVAEKDVLNLIELLMNQLLKLDGIMADGDVKLQRKMQVRRVQKYVETLDMLKIKNSMPSS 235
           KV E DVLNLI LLMNQLLKLDGIMADGDVKLQRKMQVRRVQKYVETLD+LK+KNSMPSS
Sbjct: 175 KVVETDVLNLIGLLMNQLLKLDGIMADGDVKLQRKMQVRRVQKYVETLDVLKVKNSMPSS 234

Query: 236 N---------KHHSNGQRLAPIQEQPQQQPPRHSNGH---VLASIQEQQA---RHSFEN- 279
           N         + HSNGQR  PIQEQ Q    +HSNG     LA IQEQQ    R+S EN 
Sbjct: 235 NGDQAPVKPHQKHSNGQRKGPIQEQQQ----KHSNGRHRLALAPIQEQQQEQPRNSSENS 290

Query: 280 LSIQQQYHQQQQQQQQQQSTTHSTSGPVVVTTKWETFDSSPGLMQVSSSS 329
           L++         Q+QQ+Q + +STSG VVVTT WE FDS P L+ V ++S
Sbjct: 291 LAL--------YQEQQEQPSRNSTSG-VVVTTNWELFDSVPPLIPVQATS 331

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741106|emb|CBI31837.3| unnamed protein product [Vitis vinifera]

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 224/359 (62%), Positives = 264/359 (73%), Gaps = 47/359 (13%)

Query: 1   MMRMKTSKTTGPSPMATMNGGSA----EAAAHEWELRPGGMLVQKRNPDSDRTSAPPPTI 56
           MMR+K      P+ ++++NGGSA    E+   EWELRPGGMLVQ+R+PDSDR+S P PTI
Sbjct: 1   MMRVKNK----PAGLSSINGGSAGDGGESGPVEWELRPGGMLVQRRDPDSDRSSVPAPTI 56

Query: 57  RVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVK 116
           RVRVK+GSIYHEI+I+SQATFGELKK+L+GPTGLHH+DQKL++KDKERDS A+LD+ GVK
Sbjct: 57  RVRVKFGSIYHEIYISSQATFGELKKMLSGPTGLHHQDQKLLFKDKERDSNAYLDMAGVK 116

Query: 117 DKSKLVLVEDPISQEKRLLEMRKNAKLEKASKSISEISLEVDRLAGQVSALESIITKGGK 176
           D+SK++LVEDPISQEKR LEMR+NAK+EKASKSISEISLEVDRLAGQVSALES+I+KGGK
Sbjct: 117 DRSKILLVEDPISQEKRYLEMRRNAKMEKASKSISEISLEVDRLAGQVSALESVISKGGK 176

Query: 177 VAEKDVLNLIELLMNQLLKLDGIMADGDVKLQRKMQVRRVQKYVETLDMLKIKNSMPSSN 236
           VAEK +LNL ELLMNQL+ LD I+ADGDVKLQRKMQVRRVQKYVETLDMLKIKNS P   
Sbjct: 177 VAEKVMLNLTELLMNQLINLDSIIADGDVKLQRKMQVRRVQKYVETLDMLKIKNSTPD-- 234

Query: 237 KHHSNGQRLAPIQEQPQQQPPRHSNGHVLASIQEQQARHSFENLSIQQQYHQQQQQQQQQ 296
              S+G ++ P+Q Q +    R SNG                         Q+       
Sbjct: 235 ---SDGDQM-PMQHQQK----RQSNG-------------------------QRPPPAAPP 261

Query: 297 QSTTHSTSGPVVVTTKWETFDSSPGLMQVSSSSTSTFNPATNNNNNSSGPPKFPWEFFD 355
             + HSTSGPVVVTTKWETFDS+     VS+  TS    A  N  +    PK  WEFFD
Sbjct: 262 LPSRHSTSGPVVVTTKWETFDSASAPPLVSAPPTSVTTAANINPVH----PKLNWEFFD 316

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529292|ref|XP_003533229.1| PREDICTED: uncharacterized protein LOC100786421 [Glycine max]

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 235/355 (66%), Positives = 267/355 (75%), Gaps = 36/355 (10%)

Query: 8   KTTGPSPMATMNGGS----AEAAAHEWELRPGGMLVQKRNPDSDRTSAPPPTIRVRVKYG 63
           KT G S +   NGGS    AE  + EWE+RPGGMLVQ R  DSDR  A  PTIRVR+K+G
Sbjct: 14  KTNGHSSIMN-NGGSDGNRAEPGSKEWEMRPGGMLVQMRTADSDRNPALVPTIRVRIKFG 72

Query: 64  SIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVL 123
           SIYHE++I+SQATFGELKK+L+GPTGLHHEDQKL YKDKERDSKAFLD+VGVKDKSK+VL
Sbjct: 73  SIYHEVNISSQATFGELKKMLSGPTGLHHEDQKLFYKDKERDSKAFLDMVGVKDKSKIVL 132

Query: 124 VEDPISQEKRLLEMRKNAKLEKASKSISEISLEVDRLAGQVSALESIITKGGKVAEKDVL 183
           VEDPISQEKRLLE RKNAK+EKA+KSIS ISLEVDRLAG+VSA ESII+KGG+V E D+L
Sbjct: 133 VEDPISQEKRLLERRKNAKMEKAAKSISAISLEVDRLAGRVSAFESIISKGGRVVETDLL 192

Query: 184 NLIELLMNQLLKLDGIMADGDVKLQRKMQVRRVQKYVETLDMLKIKNSMPSSNKHHSNGQ 243
           NLIELLMNQLLKLDGI+ADGDVKLQRKMQV+R+QKYVETLD+LK+KNSM SSN  H+  Q
Sbjct: 193 NLIELLMNQLLKLDGIVADGDVKLQRKMQVKRIQKYVETLDVLKVKNSMSSSNGDHATVQ 252

Query: 244 RLAPIQEQPQQQPPRHSNGH---VLASIQEQQARHSFENLSIQQQYHQQQQQQQQQQSTT 300
            L       QQQ  +HSNGH    LA I                    Q+QQQ+Q+Q   
Sbjct: 253 -LQQKHSNGQQQ--KHSNGHHRSALAPI--------------------QEQQQEQEQPPR 289

Query: 301 HSTSGPVVVTTKWETFDSSPGLMQVSSSSTSTFNPATNNNNNSSGPPKFPWEFFD 355
           +STSG VVVTT WE FDS P L+ V S+S S     T    N SGPPKF WEFF+
Sbjct: 290 NSTSG-VVVTTNWELFDSVPPLIPVPSTSPSPHPSET----NKSGPPKFNWEFFN 339

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|84468416|dbj|BAE71291.1| hypothetical protein [Trifolium pratense]

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 227/351 (64%), Positives = 267/351 (76%), Gaps = 27/351 (7%)

Query: 19  NGGSA-EAAAHEWELRPGGMLVQKR-NPDSDRTSAPPPTIRVRVKYGSIYHEIHINSQAT 76
           NGGS  E    EWE+RPGGMLVQ+R + DSDR    PPTI+VRVKYGS YHE++I+S AT
Sbjct: 10  NGGSGTEPRGPEWEMRPGGMLVQRRTDGDSDRKPVQPPTIKVRVKYGSTYHEVNISSIAT 69

Query: 77  FGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVEDPISQEKRLLE 136
           FGELKK+LTGPTGLHH DQK+ YKDKERDSKAFLD+VGVKDKSKLV++EDPISQEKR LE
Sbjct: 70  FGELKKMLTGPTGLHHLDQKIFYKDKERDSKAFLDIVGVKDKSKLVVMEDPISQEKRYLE 129

Query: 137 MRKNAKLEKASKSISEISLEVDRLAGQVSALESIITKGGKVAEKDVLNLIELLMNQLLKL 196
           MRKNA +EKA+KSISEISLEVDRLAGQVSA+E+II+KGGKV E D+L+LIE LMNQL+KL
Sbjct: 130 MRKNANMEKAAKSISEISLEVDRLAGQVSAMETIISKGGKVVETDLLSLIEKLMNQLIKL 189

Query: 197 DGIM-ADGDVKLQRKMQVRRVQKYVETLDMLKIKNSMPSSNKH----------HSNGQRL 245
           DGIM ADGDVKLQRKMQV+RVQKYVETLDMLKIKN+  +SN H          HS G+RL
Sbjct: 190 DGIMVADGDVKLQRKMQVKRVQKYVETLDMLKIKNN--NSNGHQEAKKKHQQKHSYGKRL 247

Query: 246 APIQEQPQQQPPRHSNG-HVLASIQEQQARHSFENLSIQQQYHQQQQQQQQQQSTTHSTS 304
           API+EQPQ+     SNG H L    EQQ +    N      +     QQ Q   + +S++
Sbjct: 248 APIEEQPQED--NMSNGNHKLQPNLEQQKQAPQRN---SNGHSSLVFQQMQHNPSMNSSA 302

Query: 305 GPVVVTTKWETFDSSPGLMQVSSSSTSTFNPATNNNNNSSGPPKFPWEFFD 355
             VVVTTKWETFDS P L+ V+S+S+S+      +  N+S P KF WEFF+
Sbjct: 303 SEVVVTTKWETFDSLPPLIPVTSTSSSS------STTNNSVPRKFNWEFFE 347

Source: Trifolium pratense

Species: Trifolium pratense

Genus: Trifolium

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	355
TAIR|locus:2173108	342	BAG1 "BCL-2-associated athanog	0.870	0.903	0.532	1.4e-80
TAIR|locus:2182900	303	BAG3 "BCL-2-associated athanog	0.619	0.726	0.632	3.2e-75
TAIR|locus:2074353	269	BAG4 "BCL-2-associated athanog	0.577	0.762	0.388	7.2e-36
TAIR|locus:2145683	163	AT5G14360 "AT5G14360" [Arabido	0.321	0.699	0.428	2.7e-20
TAIR|locus:2168788	165	AT5G40630 "AT5G40630" [Arabido	0.369	0.793	0.316	3.2e-17
POMBASE|SPBC16G5.11c	195	bag101 "BAG family molecular c	0.321	0.584	0.283	0.00043

TAIR|locus:2173108 BAG1 "BCL-2-associated athanogene 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 809 (289.8 bits), Expect = 1.4e-80, P = 1.4e-80
 Identities = 181/340 (53%), Positives = 216/340 (63%)

Query:    20 GGSAEAAAHEWELRPGGMLVQKRNPDSDRTSAPPPT-IRVRVKYGSIYHEIHINSQATFG 78
             GG  E+   + E+RPGGMLVQKRNPD D    PPP  IRVR+KYG++YHEI+I+ QA+FG
Sbjct:    30 GGGRESGGRDLEIRPGGMLVQKRNPDLDPVGPPPPPMIRVRIKYGAVYHEINISPQASFG 89

Query:    79 ELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVEDPISQEKRLLEMR 138
             ELKK+LTGPTG+HH+DQKL+YKDKERDSKAFLDV GVKDKSK+VL+EDP+SQEKR LEMR
Sbjct:    90 ELKKMLTGPTGIHHQDQKLMYKDKERDSKAFLDVSGVKDKSKMVLIEDPLSQEKRFLEMR 149

Query:   139 KNAKLEKASKSISEISLEVDRLAGQVSALESIITKGGKVAEKDVXXXXXXXXXXXXXXDG 198
             K AK EKASK+IS+ISLEVDRL G+VSA E +  KGGK+AEKD+              D 
Sbjct:   150 KIAKTEKASKAISDISLEVDRLGGRVSAFEMVTKKGGKIAEKDLVTVIELLMNELIKLDA 209

Query:   199 IMADGDVKLQRKMQVRRVQKYVETLDMLKIKNSMPSSN-KHHSNGQRLAXXXXXXXXXXX 257
             I+A+GDVKLQRKMQV+RVQ YVETLD LK+KNSM +   K  S  QRLA           
Sbjct:   210 IVAEGDVKLQRKMQVKRVQNYVETLDALKVKNSMANGQQKQSSTAQRLAPIQ-------- 261

Query:   258 RHSNGHVLASIQEQQARHSFENLSIXXXXXXXXXXXXXXXSTTHSTSGPVVV--TTKWET 315
              H+N       QEQ+   S  ++ I                  +S  GP V+  + KWET
Sbjct:   262 EHNN----EERQEQKPIQSLMDMPIQYKEKKQEIEE----EPRNSGEGPFVLDSSAKWET 313

Query:   316 FDSSPGLMQVXXXXXXXXXXXXXXXXXXXGPPKFPWEFFD 355
             FD  P    V                    PP+F WEFFD
Sbjct:   314 FDHHP----VTPLSSTTAKNNAI-------PPRFNWEFFD 342

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0051087 "chaperone binding" evidence=IEA

GO:0006833 "water transport" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2182900 BAG3 "BCL-2-associated athanogene 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 704 (252.9 bits), Expect = 3.2e-75, Sum P(2) = 3.2e-75
 Identities = 146/231 (63%), Positives = 176/231 (76%)

Query:     1 MMRMKTSKTTGPSPMATMNGGSAEAAAHEWELRPGGMLVQKRNPDSDRTSAPPPTIRVRV 60
             MM+M T    G SP + + GG++    +EWE RPGGM+VQ+R   +D+ S  P   RVRV
Sbjct:     1 MMKMNT----GTSP-SVIGGGTS---GNEWESRPGGMVVQRR---TDQNSDVPRVFRVRV 49

Query:    61 KYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSK 120
             KYGS+YHEI+INSQ++FGELKK+L+   GLHHED K++YKDKERDSK FLD+ GVKD+SK
Sbjct:    50 KYGSVYHEININSQSSFGELKKMLSDQVGLHHEDMKVLYKDKERDSKMFLDLCGVKDRSK 109

Query:   121 LVLVEDPISQEKRLLEMRKNAKLEKASKSISEISLEVDRLAGQVSALESIITKGGKVAEK 180
             LV+ EDPISQEKRLL  RKNA +EKASKSIS+IS EVDRLAGQVSA E++I KGGKV EK
Sbjct:   110 LVVKEDPISQEKRLLAKRKNAAIEKASKSISDISFEVDRLAGQVSAFETVINKGGKVEEK 169

Query:   181 DVXXXXXXXXXXXXXXDGIMADGDVKLQRKMQVRRVQKYVETLDMLKIKNS 231
              +              D I+ADGDVKL RKMQV+RVQKYVE LD+LK+KNS
Sbjct:   170 SLVNLIEMLMNQLLRLDAIIADGDVKLMRKMQVQRVQKYVEALDLLKVKNS 220

GO:0005634 "nucleus" evidence=ISM

GO:0051087 "chaperone binding" evidence=IEA

GO:0006301 "postreplication repair" evidence=RCA

GO:0006816 "calcium ion transport" evidence=RCA

TAIR|locus:2074353 BAG4 "BCL-2-associated athanogene 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 364 (133.2 bits), Expect = 7.2e-36, Sum P(2) = 7.2e-36
 Identities = 84/216 (38%), Positives = 125/216 (57%)

Query:    29 EWELRPGGMLVQKRN--------P--DSDRTSAP-PPTIRVRVKYGSIYHEIHINSQATF 77
             EWE+RPGGMLVQ+R+        P  D D  SA    TIR+ V +GS +H++HI++ ATF
Sbjct:    10 EWEVRPGGMLVQRRDDAASSDHKPLQDPDSASAAFAQTIRITVSHGSSHHDLHISAHATF 69

Query:    78 GELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVEDPISQEKRLLEM 137
             G++KK L   TGL   + K++++  ERD    L   GVKD SKLV+V +  ++       
Sbjct:    70 GDVKKALVQKTGLEASELKILFRGVERDDAEQLQAAGVKDASKLVVVVEDTNKRVEQQPP 129

Query:   138 RKNAKLEKASKSISEISLEVDRLAGQVSALESIITKGGKVAEKDVXXXXXXXXXXXXXXD 197
                 ++EKA  +++ ++ EVD+L+ +V ALE  +  G +VA ++               D
Sbjct:   130 VVTKEMEKAIAAVNAVTGEVDKLSDRVVALEVAVNGGTQVAVREFDMAAELLMRQLLKLD 189

Query:   198 GIMADGDVKLQRKMQVRRVQKYVETLDMLKIKNSMP 233
             GI A+GD K+QRK +VRR+Q   E +D LK + S P
Sbjct:   190 GIEAEGDAKVQRKAEVRRIQNLQEAVDKLKARCSNP 225

GO:0005634 "nucleus" evidence=ISM

GO:0051087 "chaperone binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0009651 "response to salt stress" evidence=IMP

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2145683 AT5G14360 "AT5G14360" [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
 Identities = 51/119 (42%), Positives = 77/119 (64%)

Query:    19 NGGSAEAAAHEWELRPGGMLVQKRNPDSDRTSAPPPTIRVRVKYGSIYHEIHINSQATFG 78
             N  S      +WELRPGGMLVQKR     + S     I +RV   + +H++ I + +TFG
Sbjct:    38 NNSSCSNCEIKWELRPGGMLVQKR-----QESIGEDLISIRVSTFAHFHDLSIEATSTFG 92

Query:    79 ELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVEDPISQEKRLLEM 137
             ELK +L+  TGL  + Q+L++K KER+   +L +VGV DK K++L+EDP  ++K+LL++
Sbjct:    93 ELKMVLSLLTGLEPKQQRLVFKGKEREDHEYLHMVGVGDKDKVLLLEDPGFKDKKLLDL 151

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2168788 AT5G40630 "AT5G40630" [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 45/142 (31%), Positives = 89/142 (62%)

Query:     3 RMKTSKTTGPSPMATMNGGSAEAAAH------EWELRPGGMLVQKRNPDSDRTSAPPPTI 56
             +  +S ++  S  ++++  S+ +++       +WE+RPGGMLVQKR+ DS+        I
Sbjct:    24 KRSSSSSSSSSSFSSLSSSSSSSSSSCNNNNIKWEMRPGGMLVQKRSEDSNTEDL----I 79

Query:    57 RVRVKYGS-IYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGV 115
              +RV   S + +EI I++ +TFGELK ++   +G+  ++Q+L+++ KER+ + +L ++GV
Sbjct:    80 SLRVSTVSQLSYEISIDANSTFGELKMMIAIVSGIEAKEQRLLFRGKEREDREYLHMIGV 139

Query:   116 KDKSKLVLVEDPISQEKRLLEM 137
              D  K+ L++DP  +E + + +
Sbjct:   140 GDGDKVFLLQDPAFKELKHIHL 161

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

POMBASE|SPBC16G5.11c bag101 "BAG family molecular chaperone regulator Bag101 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 109 (43.4 bits), Expect = 0.00043, P = 0.00043
 Identities = 34/120 (28%), Positives = 61/120 (50%)

Query:    55 TIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKE-RDSKAFLDVV 113
             T  V + YG+    + +N   T  EL   L   T +  +  KL Y  K  +D KA L  +
Sbjct:     5 TSTVTIHYGNQRFPVAVNLNETLSELIDDLLETTEISEKKVKLFYAGKRLKDKKASLSKL 64

Query:   114 GVKDKSKLVLVEDPISQEKRLLEMRKNAKLEKASKSISEISLEVDRLAGQVSALESIITK 173
             G+K+ SK++ +  P  Q++   E  K+  +E A K+ +E  +   R++G++ A++  + K
Sbjct:    65 GLKNHSKILCIR-PHKQQRGSKE--KDT-VEPAPKAEAENPV-FSRISGEIKAIDQYVDK 119


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.129   0.362    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      355       296   0.00093  115 3  11 23  0.45    34
                                                     33  0.44    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  589 (63 KB)
  Total size of DFA:  191 KB (2108 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  26.66u 0.18s 26.84t   Elapsed:  00:00:01
  Total cpu time:  26.66u 0.18s 26.84t   Elapsed:  00:00:01
  Start:  Mon May 20 15:45:09 2013   End:  Mon May 20 15:45:10 2013

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0006457 "protein folding" evidence=ISO

GO:0051087 "chaperone binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0WUQ1	BAG1_ARATH	No assigned EC number	0.5981	0.8450	0.8771	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	355
cd01812	71	cd01812, BAG1_N, Ubiquitin-like domain of BAG1	4e-31
pfam02179	76	pfam02179, BAG, BAG domain	3e-18
cd01769	69	cd01769, UBL, Ubiquitin-like domain of UBL	2e-09
smart00264	79	smart00264, BAG, BAG domains, present in regulator	5e-07
cd00196	69	cd00196, UBQ, Ubiquitin-like proteins	7e-06

>gnl|CDD|176407 cd01812, BAG1_N, Ubiquitin-like domain of BAG1

 Score =  112 bits (282), Expect = 4e-31
 Identities = 42/71 (59%), Positives = 54/71 (76%)

Query: 56  IRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGV 115
           IRVRVK+G   H++ I+SQATFG+LKK+L   TG+   DQKLI+K KERD    LD+ GV
Sbjct: 1   IRVRVKHGGESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGV 60

Query: 116 KDKSKLVLVED 126
           KD SK++L+ED
Sbjct: 61  KDGSKVMLLED 71

BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP). Length = 71

>gnl|CDD|216918 pfam02179, BAG, BAG domain

 Score = 78.0 bits (193), Expect = 3e-18
 Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 9/82 (10%)

Query: 149 SISEISLEVDR-LAGQVSALESIITKGGKVAEKDVLNLIELLMNQLLKLDGIMADG--DV 205
            I+ I  EV++ L  +V   +      GK  EK+   L E+LM  LLKLD I  +G  D+
Sbjct: 1   KINAILDEVEKELLPEVEQFD------GKKLEKEYKKLSEMLMKLLLKLDAIDTEGNPDI 54

Query: 206 KLQRKMQVRRVQKYVETLDMLK 227
           +  RK  V+RVQ  +E LD  K
Sbjct: 55  REARKRAVKRVQGLLEKLDAKK 76

Domain present in Hsp70 regulators. Length = 76

>gnl|CDD|176364 cd01769, UBL, Ubiquitin-like domain of UBL

 Score = 53.0 bits (128), Expect = 2e-09
 Identities = 19/64 (29%), Positives = 27/64 (42%)

Query: 63  GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLV 122
                E+ ++   T  ELK  +    G+  E Q+LIY  K       L   G++D S L 
Sbjct: 6   TGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLH 65

Query: 123 LVED 126
           LV  
Sbjct: 66  LVLR 69

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways. Length = 69

>gnl|CDD|214591 smart00264, BAG, BAG domains, present in regulator of Hsp70 proteins

 Score = 46.5 bits (111), Expect = 5e-07
 Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 6/82 (7%)

Query: 149 SISEISLEVDRLAGQVSALESIITK-GGKVAEKDVLNLIELLMNQLLKLDGIMADG--DV 205
           SI +I+  +D +      +E  +    GK  +K+ L L E LM  LLKLD +  +G  D+
Sbjct: 1   SIKKINEVLDEV---QKKIEKEVQVADGKKDDKEYLRLSEELMKLLLKLDSVDVEGCEDI 57

Query: 206 KLQRKMQVRRVQKYVETLDMLK 227
           +  RK  VR +Q  +  LD  K
Sbjct: 58  REARKRLVRLIQNLLNALDSKK 79

BAG domains, present in Bcl-2-associated athanogene 1 and silencer of death domains. Length = 79

>gnl|CDD|176352 cd00196, UBQ, Ubiquitin-like proteins

 Score = 42.9 bits (101), Expect = 7e-06
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 59  RVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKD 117
           +VK       E+ + S  T  +LK+ L    GL  E Q+L+   K       L+  G++D
Sbjct: 1   KVKLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQD 60

Query: 118 KSKLVLVE 125
             +LVLV 
Sbjct: 61  GDELVLVP 68

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate. Length = 69

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	355
KOG4361	344	consensus BCL2-associated athanogene-like proteins	99.8
cd01813	74	UBP_N UBP ubiquitin processing protease. The UBP (	99.76
cd01812	71	BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter	99.7
cd01807	74	GDX_N ubiquitin-like domain of GDX. GDX contains a	99.62
cd01791	73	Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also know	99.6
cd01793	74	Fubi Fubi ubiquitin-like protein. Fubi is a ubiqui	99.57
PF02179	76	BAG: BAG domain; InterPro: IPR003103 BAG domains a	99.57
cd01809	72	Scythe_N Ubiquitin-like domain of Scythe protein.	99.57
cd01804	78	midnolin_N Ubiquitin-like domain of midnolin. midn	99.55
cd01805	77	RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo	99.55
cd01798	70	parkin_N amino-terminal ubiquitin-like of parkin p	99.53
PF00240	69	ubiquitin: Ubiquitin family; InterPro: IPR000626 U	99.53
cd01794	70	DC_UbP_C dendritic cell derived ubiquitin-like pro	99.52
cd01796	71	DDI1_N DNA damage inducible protein 1 ubiquitin-li	99.52
cd01797	78	NIRF_N amino-terminal ubiquitin-like domain of Np9	99.52
smart00264	79	BAG BAG domains, present in regulator of Hsp70 pro	99.51
cd01808	71	hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC	99.5
cd01810	74	ISG15_repeat2 ISG15 ubiquitin-like protein, second	99.49
PTZ00044	76	ubiquitin; Provisional	99.48
cd01806	76	Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn	99.48
cd01792	80	ISG15_repeat1 ISG15 ubiquitin-like protein, first	99.48
cd01800	76	SF3a120_C Ubiquitin-like domain of Mammalian splic	99.47
cd01803	76	Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40	99.47
cd01802	103	AN1_N ubiquitin-like domain of AN1. AN1 (also know	99.47
cd01790	79	Herp_N Homocysteine-responsive endoplasmic reticul	99.42
smart00213	64	UBQ Ubiquitin homologues. Ubiquitin-mediated prote	99.41
cd01815	75	BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC	99.34
KOG0010	493	consensus Ubiquitin-like protein [Posttranslationa	99.31
TIGR00601	378	rad23 UV excision repair protein Rad23. All protei	99.28
cd01769	69	UBL Ubiquitin-like domain of UBL. UBLs function by	99.26
cd01799	75	Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HO	99.23
cd01763	87	Sumo Small ubiquitin-related modifier (SUMO). Smal	99.14
KOG0005	70	consensus Ubiquitin-like protein [Cell cycle contr	99.07
cd01789	84	Alp11_N Ubiquitin-like domain of Alp11 tubulin-fol	99.06
KOG1872	473	consensus Ubiquitin-specific protease [Posttransla	99.02
PF14560	87	Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K	99.01
cd01814	113	NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and AT	99.01
cd01795	107	USP48_C USP ubiquitin-specific protease. The USP (	98.99
PF11976	72	Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter	98.91
KOG0011	340	consensus Nucleotide excision repair factor NEF2,	98.83
KOG0003	128	consensus Ubiquitin/60s ribosomal protein L40 fusi	98.78
KOG0004	156	consensus Ubiquitin/40S ribosomal protein S27a fus	98.75
cd01801	77	Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-	98.48
KOG4248	1143	consensus Ubiquitin-like protein, regulator of apo	98.42
PLN02560	308	enoyl-CoA reductase	98.39
PF13881	111	Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB	98.37
cd00196	69	UBQ Ubiquitin-like proteins. Ubiquitin homologs; I	98.35
KOG0001	75	consensus Ubiquitin and ubiquitin-like proteins [P	98.28
cd01788	119	ElonginB Ubiquitin-like domain of Elongin B. Elong	98.27
PF11543	80	UN_NPL4: Nuclear pore localisation protein NPL4; I	98.19
PF08817	79	YukD: WXG100 protein secretion system (Wss), prote	97.67
PF11470	65	TUG-UBL1: GLUT4 regulating protein TUG; InterPro:	97.26
KOG0006	446	consensus E3 ubiquitin-protein ligase (Parkin prot	97.09
cd01811	80	OASL_repeat1 2'-5' oligoadenylate synthetase-like	96.71
PF10302	97	DUF2407: DUF2407 ubiquitin-like domain; InterPro:	96.71
KOG4495	110	consensus RNA polymerase II transcription elongati	96.7
KOG3206	234	consensus Alpha-tubulin folding cofactor B [Posttr	96.47
KOG1769	99	consensus Ubiquitin-like proteins [Posttranslation	96.38
KOG3493	73	consensus Ubiquitin-like protein [Posttranslationa	96.29
COG5417	81	Uncharacterized small protein [Function unknown]	96.25
PF00789	82	UBX: UBX domain; InterPro: IPR001012 The UBX domai	95.91
smart00166	80	UBX Domain present in ubiquitin-regulatory protein	95.88
cd01767	77	UBX UBX (ubiquitin regulatory X) domain. The UBX (	95.49
KOG4361	344	consensus BCL2-associated athanogene-like proteins	95.45
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	95.39
PF15044	76	CLU_N: Mitochondrial function, CLU-N-term	95.04
KOG0013	231	consensus Uncharacterized conserved protein [Funct	94.31
PF00564	84	PB1: PB1 domain; InterPro: IPR000270 The Phox and	94.22
cd01770	79	p47_UBX p47-like ubiquitin domain. p47_UBX p47 is	93.7
cd01772	79	SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-subst	93.1
cd01773	82	Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 i	93.1
KOG4583	391	consensus Membrane-associated ER protein involved	92.83
cd06406	80	PB1_P67 A PB1 domain is present in p67 proteins wh	92.74
cd05992	81	PB1 The PB1 domain is a modular domain mediating s	92.45
cd06407	82	PB1_NLP A PB1 domain is present in NIN like protei	92.35
PRK06437	67	hypothetical protein; Provisional	92.14
cd01771	80	Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated fac	91.8
KOG2982	418	consensus Uncharacterized conserved protein [Funct	91.32
cd01774	85	Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 i	91.11
COG5227	103	SMT3 Ubiquitin-like protein (sentrin) [Posttransla	90.91
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	89.71
cd06408	86	PB1_NoxR The PB1 domain is present in the Epichloe	88.98
PF13019	162	Telomere_Sde2: Telomere stability and silencing	88.81
KOG1639	297	consensus Steroid reductase required for elongatio	88.59
PRK08364	70	sulfur carrier protein ThiS; Provisional	87.99
cd06398	91	PB1_Joka2 The PB1 domain is present in the Nicotia	87.21
cd06396	81	PB1_NBR1 The PB1 domain is an essential part of NB	86.71
PLN02799	82	Molybdopterin synthase sulfur carrier subunit	83.72
cd00754	80	MoaD Ubiquitin domain of MoaD-like proteins. MoaD	83.3
TIGR02958	452	sec_mycoba_snm4 secretion protein snm4. Members of	82.81
KOG0012	380	consensus DNA damage inducible protein [Replicatio	82.52
PF14836	88	Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A	81.99
PF10209	122	DUF2340: Uncharacterized conserved protein (DUF234	80.05

>KOG4361 consensus BCL2-associated athanogene-like proteins and related BAG family chaperone regulators [Signal transduction mechanisms]

Probab=99.80  E-value=1.7e-20  Score=184.91  Aligned_cols=212  Identities=40%  Similarity=0.530  Sum_probs=175.6

Q ss_pred             ccceeecCCceEEEeecCCCCC--CCCCCCeeEEEEEeCCEEEEEEEcCCCCHH---HHHHHHhcccCCCccCc--EEec
Q 018493           27 AHEWELRPGGMLVQKRNPDSDR--TSAPPPTIRVRVKYGSIYHEIHINSQATFG---ELKKLLTGPTGLHHEDQ--KLIY   99 (355)
Q Consensus        27 ~~~we~rpggmlvqkR~~~~~~--~~~~~~~I~V~VK~gg~~~~V~V~~~sTVg---dLK~~I~e~TGVppe~Q--KLIy   99 (355)
                      +..|+.|||||.||.|..+...  .......|+|.+.++...+.+.+.+..+++   |+++.+.+.+|+....+  |++|
T Consensus        31 ~~~~~~~Pg~~~~q~r~~p~~~~~~~~~p~~~~v~~~~~~~~~~~~i~p~~~~g~~~d~a~~~~~~ag~sh~d~~~k~~y  110 (344)
T KOG4361|consen   31 GVDAAPRPGGMPVQQRPQPQPPLSWPHFPFGIRVQIEYGQLGHGLAIVPQYPSGNALDLAKPLTEDAGLSHYDQEVKLVY  110 (344)
T ss_pred             CcccccCCCCCcCCcCCCCCCcccccccCCCccceeeecccccccccccccccccchhhhcccccccceeecccccccce
Confidence            6799999999999999853222  112456799999999988999999999888   99999999999999887  9999


Q ss_pred             cCcc-cCCchhhhhcCCCCCCEEEEeecCCchHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhHH---HHHHHHHhCC
Q 018493          100 KDKE-RDSKAFLDVVGVKDKSKLVLVEDPISQEKRLLEMRKNAKLEKASKSISEISLEVDRLAGQVS---ALESIITKGG  175 (355)
Q Consensus       100 kGK~-ldD~~tLs~~GIKdgSkImLv~~p~s~E~~~~e~kk~k~ieka~~aIs~V~~eVDkLa~ev~---~LE~~I~~g~  175 (355)
                      .+++ .|....|+.+|+++-++|.++.++.+...+...........++...+..+..+.+++.+++.   ..+-....+.
T Consensus       111 ~~~e~rd~~l~l~~~g~p~~sk~~~~~~~~~q~~~~~~~~~~p~~~q~s~~v~~~~~~t~r~~~~~v~p~~~~~~~~~~~  190 (344)
T KOG4361|consen  111 VDKELRDQSLRLSSAGVPDASKINVVPDPGSQRARQLGALVAPAPTQTSKNVSDPQLETYRLIGQVVDPEQKELVPNGGG  190 (344)
T ss_pred             ecccccccccccccccCcccccceeccChhhcccccccccccccccccccccccccceeeeccccccchhhhhcccCCCC
Confidence            9999 67778999999999999999998887777755555555556666667666667776666664   3444566678


Q ss_pred             CcchhhHhhHHHHHHH----HHHhccCCCCChhhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCC
Q 018493          176 KVAEKDVLNLIELLMN----QLLKLDGIMADGDVKLQRKMQVRRVQKYVETLDMLKIKNSMPSSNKH  238 (355)
Q Consensus       176 Kv~eke~~~LsE~LMq----~LLKLD~IeaeGdaR~qRK~~VkrVQ~~Le~LD~lk~~n~~~~~~~~  238 (355)
                      +...+......+.||.    .||++|.+.++||+...||..++|+|.+-+..|.|++.+++.+.+-.
T Consensus       191 q~e~~p~~~~iq~l~~~~~e~ll~~~~~~~~~dv~~~~~~~~~r~q~~seaq~~l~~~~s~~~~~~~  257 (344)
T KOG4361|consen  191 QPESDPLVAQIQLLMNSLSEELLLLDAILPEGDVEVPRKPAVVRKQAYSEAQDLLKALDSTSNEEQP  257 (344)
T ss_pred             CcCCChhhhhHHHhhhhcchhhhhhcccCCCcccccccccccccccchhhhhhhhhhcccccccccc
Confidence            8888888888999999    79999999999999999999999999999999999999887655533

>cd01813 UBP_N UBP ubiquitin processing protease

Probab=99.76  E-value=1.8e-18  Score=136.12  Aligned_cols=71  Identities=25%  Similarity=0.358  Sum_probs=68.6

Q ss_pred             eEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEec---cCcccCCchhhhhcCCCCCCEEEEeec
Q 018493           56 IRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIY---KDKERDSKAFLDVVGVKDKSKLVLVED  126 (355)
Q Consensus        56 I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIy---kGK~ldD~~tLs~~GIKdgSkImLv~~  126 (355)
                      |+|.|||++..|+|+|++++||++||++|++.||||+++|||||   +|+.++|+.+|++|||++|++|||||.
T Consensus         1 ~~i~vk~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lmGs   74 (74)
T cd01813           1 VPVIVKWGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMMGT   74 (74)
T ss_pred             CEEEEEECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEEeC
Confidence            68999999999999999999999999999999999999999996   999999999999999999999999983

The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.

>cd01812 BAG1_N Ubiquitin-like domain of BAG1

Probab=99.70  E-value=3.4e-17  Score=125.00  Aligned_cols=71  Identities=59%  Similarity=0.849  Sum_probs=68.8

Q ss_pred             eEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493           56 IRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED  126 (355)
Q Consensus        56 I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~  126 (355)
                      |+|+|+|++..++++|++++||++||++|++.+|+|+++|+|+|+|+.++|+.+|++|||++|++|+|+++
T Consensus         1 i~i~vk~~g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~~   71 (71)
T cd01812           1 IRVRVKHGGESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLED   71 (71)
T ss_pred             CEEEEEECCEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEecC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999974

BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).

>cd01807 GDX_N ubiquitin-like domain of GDX

Probab=99.62  E-value=1e-15  Score=119.10  Aligned_cols=71  Identities=24%  Similarity=0.334  Sum_probs=65.4

Q ss_pred             EEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeecC
Q 018493           57 RVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVEDP  127 (355)
Q Consensus        57 ~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~p  127 (355)
                      .|.|+. +|..+.++|++++||++||++|++.+|+|+++|+|+|+|+.++|+.+|++|||++|++|+|+..+
T Consensus         2 ~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~   73 (74)
T cd01807           2 FLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP   73 (74)
T ss_pred             EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence            566774 56788999999999999999999999999999999999999999999999999999999998753

GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.

>cd01791 Ubl5 UBL5 ubiquitin-like modifier

Probab=99.60  E-value=1.8e-15  Score=119.05  Aligned_cols=70  Identities=24%  Similarity=0.174  Sum_probs=66.0

Q ss_pred             eeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEe
Q 018493           55 TIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLV  124 (355)
Q Consensus        55 ~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv  124 (355)
                      +|.|+|+. .|+.+.++|++++||++||++|++..|+++++|||+|+|+.++|+.+|++|||++|++|||.
T Consensus         1 ~~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~   71 (73)
T cd01791           1 MIEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELY   71 (73)
T ss_pred             CEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEE
Confidence            47888987 47889999999999999999999999999999999999999999999999999999999985

UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.

>cd01793 Fubi Fubi ubiquitin-like protein

Probab=99.57  E-value=5.1e-15  Score=115.38  Aligned_cols=69  Identities=23%  Similarity=0.356  Sum_probs=64.1

Q ss_pred             eEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493           56 IRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        56 I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~  125 (355)
                      +.|.|+.+ .++.++|++++||++||++|++.+|+|+++|+|+|.||.++|+.+|++|||+++++|+|+.
T Consensus         1 mqi~vk~~-~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~   69 (74)
T cd01793           1 MQLFVRAQ-NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAG   69 (74)
T ss_pred             CEEEEECC-CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEE
Confidence            35677765 6789999999999999999999999999999999999999999999999999999999975

Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.

>PF02179 BAG: BAG domain; InterPro: IPR003103 BAG domains are present in Bcl-2-associated athanogene 1 and silencer of death domains

Probab=99.57  E-value=6.2e-15  Score=116.44  Aligned_cols=72  Identities=43%  Similarity=0.673  Sum_probs=61.3

Q ss_pred             HHHHHHHHHH-hhhhHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHhccCCCCCh--hhHHHHHHHHHHHHHHHHHHHHh
Q 018493          150 ISEISLEVDR-LAGQVSALESIITKGGKVAEKDVLNLIELLMNQLLKLDGIMADG--DVKLQRKMQVRRVQKYVETLDML  226 (355)
Q Consensus       150 Is~V~~eVDk-La~ev~~LE~~I~~g~Kv~eke~~~LsE~LMq~LLKLD~IeaeG--daR~qRK~~VkrVQ~~Le~LD~l  226 (355)
                      |..+..+|+. |.+++..+      +.+..++++.+|+|+||+.|++||+|+++|  ++|.+||.+|++||++|+.||.+
T Consensus         2 I~~i~~~v~~~l~~~v~~~------~~~~~~~~~~~l~E~L~~~LlkLD~I~~~g~~~iR~~RK~~v~~iq~~l~~lD~~   75 (76)
T PF02179_consen    2 IEKIIDEVEKELQPEVEQF------DGKKDEKEYLRLSEMLMQLLLKLDSIETEGNPEIREKRKQAVKRIQQLLDKLDSL   75 (76)
T ss_dssp             HHHHHHHHHHCHHHHHHHH------HHHHCCHHHHHHHHHHHHHHHHHHTCECSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH------hccCcHHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            5566667775 66666555      444559999999999999999999999988  89999999999999999999997


Q ss_pred             h
Q 018493          227 K  227 (355)
Q Consensus       227 k  227 (355)
                      |
T Consensus        76 k   76 (76)
T PF02179_consen   76 K   76 (76)
T ss_dssp             H
T ss_pred             C
Confidence            6

The BAG proteins are modulators of chaperone activity, they bind to HSP70/HSC70 proteins and promote substrate release. The proteins have anti-apoptotic activity and increase the anti-cell death function of BCL-2 induced by various stimuli. BAG-1 binds to the serine/threonine kinase Raf-1 or Hsc70/Hsp70 in a mutually exclusive interaction. BAG-1 promotes cell growth by binding to and stimulating Raf-1 activity. The binding of Hsp70 to BAG-1 diminishes Raf-1 signalling and inhibits subsequent events, such as DNA synthesis, as well as arrests the cell cycle. BAG-1 has been suggested to function as a molecular switch that encourages cells to proliferate in normal conditions but become quiescent under a stressful environment []. BAG-family proteins contain a single BAG domain, except for human BAG-5 which has four BAG repeats. The BAG domain is a conserved region located at the C terminus of the BAG-family proteins that binds the ATPase domain of Hsc70/Hsp70. The BAG domain is evolutionarily conserved, and BAG domain containing proteins have been described and/or proven in a variety of organisms including Mus musculus (Mouse), Xenopus spp., Drosophila spp., Bombyx mori (Silk moth), Caenorhabditis elegans, Saccharomyces cerevisiae (Baker's yeast), Schizosaccharomyces pombe (Fission yeast), and Arabidopsis thaliana (Mouse-ear cress). The BAG domain has 110-124 amino acids and is comprised of three anti-parallel alpha-helices, each approximately 30-40 amino acids in length. The first and second helices interact with the serine/threonine kinase Raf-1 and the second and third helices are the sites of the BAG domain interaction with the ATPase domain of Hsc70/Hsp70. Binding of the BAG domain to the ATPase domain is mediated by both electrostatic and hydrophobic interactions in BAG-1 and is energy requiring.; GO: 0051087 chaperone binding; PDB: 1M7K_A 1M62_A 1T7S_A 1UGO_A 1I6Z_A 3A8Y_C 1UK5_A 3FZM_B 3FZL_B 3M3Z_B ....

>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein

Probab=99.57  E-value=6.8e-15  Score=112.20  Aligned_cols=70  Identities=27%  Similarity=0.394  Sum_probs=65.2

Q ss_pred             eEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493           56 IRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        56 I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~  125 (355)
                      |+|.|++ .+..+.+.+++++||++||++|++.+|+|+++|+|+|+|+.++|+.+|++|||++|++|+|+.
T Consensus         1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~   71 (72)
T cd01809           1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVK   71 (72)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEe
Confidence            5778886 467899999999999999999999999999999999999999999999999999999999974

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.

>cd01804 midnolin_N Ubiquitin-like domain of midnolin

Probab=99.55  E-value=1.1e-14  Score=115.28  Aligned_cols=70  Identities=21%  Similarity=0.295  Sum_probs=64.3

Q ss_pred             eEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493           56 IRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED  126 (355)
Q Consensus        56 I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~  126 (355)
                      ++|+|+. .|..++|+|++++||++||+.|++.+|+++++|||+|+|+.++|+ +|++|||++|++|+|+..
T Consensus         2 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~   72 (78)
T cd01804           2 MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPT   72 (78)
T ss_pred             eEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEee
Confidence            5677775 467799999999999999999999999999999999999999998 999999999999999863

midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.

>cd01805 RAD23_N Ubiquitin-like domain of RAD23

Probab=99.55  E-value=1.4e-14  Score=112.48  Aligned_cols=70  Identities=24%  Similarity=0.339  Sum_probs=64.6

Q ss_pred             EEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCC--CccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493           57 RVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGL--HHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED  126 (355)
Q Consensus        57 ~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGV--ppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~  126 (355)
                      .|+|+. +|..+.+++++++||++||+.|++.+|+  ++++|+|+|+|+.++|+.+|++|||++|++|+|+..
T Consensus         2 ~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~   74 (77)
T cd01805           2 KITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVS   74 (77)
T ss_pred             EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEe
Confidence            566664 5688999999999999999999999999  999999999999999999999999999999999864

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).

>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein

Probab=99.53  E-value=1.4e-14  Score=111.53  Aligned_cols=67  Identities=15%  Similarity=0.274  Sum_probs=62.0

Q ss_pred             EEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493           59 RVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        59 ~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~  125 (355)
                      .|+. +|..+.+++++++||++||++|++.+|+|+++|+|+|+|+.++|+.+|++|||++||+|+|+.
T Consensus         2 ~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~   69 (70)
T cd01798           2 YVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVR   69 (70)
T ss_pred             EEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence            3443 567788999999999999999999999999999999999999999999999999999999985

parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.

>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade

Probab=99.53  E-value=1.8e-14  Score=109.53  Aligned_cols=65  Identities=32%  Similarity=0.501  Sum_probs=61.7

Q ss_pred             CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeecC
Q 018493           63 GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVEDP  127 (355)
Q Consensus        63 gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~p  127 (355)
                      .|..|.++|++++||++||++|++.+|+|++.|+|+|+|+.++|+.+|++|||++|++|+|+.++
T Consensus         4 ~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~   68 (69)
T PF00240_consen    4 SGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKP   68 (69)
T ss_dssp             TSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESS
T ss_pred             CCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEec
Confidence            46789999999999999999999999999999999999999999999999999999999998753

There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....

>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein

Probab=99.52  E-value=1.8e-14  Score=112.30  Aligned_cols=63  Identities=19%  Similarity=0.250  Sum_probs=60.1

Q ss_pred             CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493           63 GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        63 gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~  125 (355)
                      +|.++.++|++++||++||++|++..|+|+++|+|+|+|+.++|+.+|.+|||++|++|+|+.
T Consensus         7 ~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~   69 (70)
T cd01794           7 TGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV   69 (70)
T ss_pred             CCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence            457789999999999999999999999999999999999999999999999999999999974

DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.

>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain

Probab=99.52  E-value=2.1e-14  Score=111.61  Aligned_cols=67  Identities=24%  Similarity=0.394  Sum_probs=60.9

Q ss_pred             EEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCc-hhhhhcCCCCCCEEEE
Q 018493           57 RVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSK-AFLDVVGVKDKSKLVL  123 (355)
Q Consensus        57 ~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~-~tLs~~GIKdgSkImL  123 (355)
                      +|+...++.++.+++++++||++||++|++.+|+|+++|+|+|+||.++|+ .+|++|||++|++|+|
T Consensus         2 ~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l   69 (71)
T cd01796           2 TVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVL   69 (71)
T ss_pred             EEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEE
Confidence            455554677899999999999999999999999999999999999999876 6899999999999987

DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.

>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF

Probab=99.52  E-value=2.5e-14  Score=113.68  Aligned_cols=71  Identities=17%  Similarity=0.215  Sum_probs=62.7

Q ss_pred             EEEEEe--CCEEEEEE-EcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeecC
Q 018493           57 RVRVKY--GSIYHEIH-INSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVEDP  127 (355)
Q Consensus        57 ~V~VK~--gg~~~~V~-V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~p  127 (355)
                      .|+|+.  |...+.++ +.+++||++||++|++.+|+|+++|||+|+||.++|+.+|++|||++|++|+|+...
T Consensus         2 ~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~   75 (78)
T cd01797           2 WIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQ   75 (78)
T ss_pred             EEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEec
Confidence            455664  44446885 889999999999999999999999999999999999999999999999999998643

NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.

>smart00264 BAG BAG domains, present in regulator of Hsp70 proteins

Probab=99.51  E-value=5.5e-14  Score=112.36  Aligned_cols=54  Identities=43%  Similarity=0.595  Sum_probs=50.9

Q ss_pred             CCCcchhhHhhHHHHHHHHHHhccCCCCCh--hhHHHHHHHHHHHHHHHHHHHHhh
Q 018493          174 GGKVAEKDVLNLIELLMNQLLKLDGIMADG--DVKLQRKMQVRRVQKYVETLDMLK  227 (355)
Q Consensus       174 g~Kv~eke~~~LsE~LMq~LLKLD~IeaeG--daR~qRK~~VkrVQ~~Le~LD~lk  227 (355)
                      .+++.+++|++|+|+||+.|++||+|+++|  ++|.+||.+|++||++++.||.++
T Consensus        24 ~~~~~~~~~~~l~E~l~~~LlkLD~i~~~g~~~~R~~RK~~v~~iq~~l~~lD~~~   79 (79)
T smart00264       24 DGKKDDKEYLRLSEELMKLLLKLDSVDVEGCPDIREARKRLVRLIQNLLNALDSKK   79 (79)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHcCcCcCCcHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            467789999999999999999999999999  899999999999999999999864

BAG domains, present in Bcl-2-associated athanogene 1 and silencer of death domains

>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2

Probab=99.50  E-value=3.5e-14  Score=109.67  Aligned_cols=70  Identities=26%  Similarity=0.263  Sum_probs=62.3

Q ss_pred             eEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493           56 IRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        56 I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~  125 (355)
                      |+|+|+.....+.+++++++||++||+.|++.+|+++++|+|+|+|+.++|+.+|++|||++|++|+|+-
T Consensus         1 ~~i~vk~~~g~~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~   70 (71)
T cd01808           1 IKVTVKTPKDKEEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVI   70 (71)
T ss_pred             CEEEEEcCCCCEEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEE
Confidence            4566775322358999999999999999999999999999999999999999999999999999999974

hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.

>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2

Probab=99.49  E-value=4.8e-14  Score=109.87  Aligned_cols=67  Identities=12%  Similarity=0.130  Sum_probs=61.9

Q ss_pred             EEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493           59 RVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        59 ~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~  125 (355)
                      .|+. .++++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+.
T Consensus         2 ~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~   69 (74)
T cd01810           2 LVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNL   69 (74)
T ss_pred             EEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEE
Confidence            4553 467889999999999999999999999999999999999999999999999999999999975

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>PTZ00044 ubiquitin; Provisional

Probab=99.48  E-value=7.4e-14  Score=108.42  Aligned_cols=70  Identities=19%  Similarity=0.241  Sum_probs=64.8

Q ss_pred             EEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493           57 RVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED  126 (355)
Q Consensus        57 ~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~  126 (355)
                      .|.|+. .|.++.+.|++++||++||++|++.+|+|++.|+|+|+|+.++|+.+|++|||++|++|+|+..
T Consensus         2 ~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~   72 (76)
T PTZ00044          2 QILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQ   72 (76)
T ss_pred             EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEE
Confidence            567775 5678899999999999999999999999999999999999999999999999999999999853

>cd01806 Nedd8 Nebb8-like ubiquitin protein

Probab=99.48  E-value=1.1e-13  Score=106.66  Aligned_cols=70  Identities=23%  Similarity=0.281  Sum_probs=64.5

Q ss_pred             eEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493           56 IRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        56 I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~  125 (355)
                      +.|+|+. +|..+.+.|+++.||++||++|++.+|+|+++|+|+|.|+.++|+.+|++|||++|++|+|+.
T Consensus         1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~   71 (76)
T cd01806           1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVL   71 (76)
T ss_pred             CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEE
Confidence            3566775 567789999999999999999999999999999999999999999999999999999999986

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.

>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2

Probab=99.48  E-value=1e-13  Score=109.78  Aligned_cols=72  Identities=21%  Similarity=0.234  Sum_probs=66.3

Q ss_pred             eEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEE--eccCcccCCchhhhhcCCCCCCEEEEeecC
Q 018493           56 IRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKL--IYKDKERDSKAFLDVVGVKDKSKLVLVEDP  127 (355)
Q Consensus        56 I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKL--IykGK~ldD~~tLs~~GIKdgSkImLv~~p  127 (355)
                      |.|+|+. .|..+.++|++++||++||++|++.+|+++++|||  +|+|+.++|+.+|++|||++|++|+|+..+
T Consensus         3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~~   77 (80)
T cd01792           3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQN   77 (80)
T ss_pred             eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEEc
Confidence            6777886 56788899999999999999999999999999999  999999999999999999999999998753

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120

Probab=99.47  E-value=6.5e-14  Score=109.95  Aligned_cols=66  Identities=17%  Similarity=0.140  Sum_probs=62.3

Q ss_pred             EeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493           61 KYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED  126 (355)
Q Consensus        61 K~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~  126 (355)
                      +-++++++++|++++||++||++|+..+|+|+++|+|+|+|+.++|+.+|++|||++|++|+|+..
T Consensus         4 ~l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~   69 (76)
T cd01800           4 KLNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLK   69 (76)
T ss_pred             ccCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEe
Confidence            347889999999999999999999999999999999999999999999999999999999999864

SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.

>cd01803 Ubiquitin Ubiquitin

Probab=99.47  E-value=1.1e-13  Score=106.61  Aligned_cols=71  Identities=20%  Similarity=0.303  Sum_probs=65.0

Q ss_pred             eEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493           56 IRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED  126 (355)
Q Consensus        56 I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~  126 (355)
                      +.|.|+. +|..+.++|++++||++||++|++.+|+|+++|+|+|+|+.++|+.+|++|||++|++|+|+..
T Consensus         1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~   72 (76)
T cd01803           1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR   72 (76)
T ss_pred             CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEE
Confidence            3567775 4678899999999999999999999999999999999999999999999999999999999853

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)

>cd01802 AN1_N ubiquitin-like domain of AN1

Probab=99.47  E-value=1.2e-13  Score=115.38  Aligned_cols=72  Identities=18%  Similarity=0.253  Sum_probs=66.5

Q ss_pred             CeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493           54 PTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        54 ~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~  125 (355)
                      +.+.|.|+. +|.++.++|++++||++||++|++..|+|+++|||+|.|+.++|+.+|++|||++|++|+|+.
T Consensus        26 ~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~stL~l~~   98 (103)
T cd01802          26 DTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYNISEGCTLKLVL   98 (103)
T ss_pred             CCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEE
Confidence            457777775 567889999999999999999999999999999999999999999999999999999999975

AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.

>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein

Probab=99.42  E-value=3.7e-13  Score=108.07  Aligned_cols=70  Identities=26%  Similarity=0.228  Sum_probs=60.7

Q ss_pred             eEEEEEe-CCEEEE--EEEcCCCCHHHHHHHHhcccC--CCccCcEEeccCcccCCchhhhhcC--CCCCCEEEEee
Q 018493           56 IRVRVKY-GSIYHE--IHINSQATFGELKKLLTGPTG--LHHEDQKLIYKDKERDSKAFLDVVG--VKDKSKLVLVE  125 (355)
Q Consensus        56 I~V~VK~-gg~~~~--V~V~~~sTVgdLK~~I~e~TG--Vppe~QKLIykGK~ldD~~tLs~~G--IKdgSkImLv~  125 (355)
                      |+|+||. .+.+++  |++++++||++||++|++..+  .++++|||||+||.|+|+.+|++|+  +.+|.+||||-
T Consensus         2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~   78 (79)
T cd01790           2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC   78 (79)
T ss_pred             eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence            7888997 456644  555899999999999999874  4579999999999999999999997  99999999983

Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.

>smart00213 UBQ Ubiquitin homologues

Probab=99.41  E-value=3.6e-13  Score=99.48  Aligned_cols=64  Identities=30%  Similarity=0.350  Sum_probs=59.8

Q ss_pred             eEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCC
Q 018493           56 IRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKS  119 (355)
Q Consensus        56 I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgS  119 (355)
                      |.|+|++.+..+.++|++++||++||++|+..+|+|+++|+|+|+|+.++|+.+|++|||++|+
T Consensus         1 ~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~   64 (64)
T smart00213        1 IELTVKTLDGTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS   64 (64)
T ss_pred             CEEEEEECCceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence            4688888667889999999999999999999999999999999999999999999999999986

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression

>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP

Probab=99.34  E-value=1e-12  Score=104.65  Aligned_cols=54  Identities=20%  Similarity=0.264  Sum_probs=49.8

Q ss_pred             cCCCCHHHHHHHHhccc--CCC-ccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493           72 NSQATFGELKKLLTGPT--GLH-HEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        72 ~~~sTVgdLK~~I~e~T--GVp-pe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~  125 (355)
                      +.++||++||++|++.+  |++ +++|||||+||.++|+.+|++|||++|++|+|+.
T Consensus        18 ~~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~   74 (75)
T cd01815          18 PGGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR   74 (75)
T ss_pred             CccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence            45689999999999996  475 9999999999999999999999999999999986

BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.

>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=99.31  E-value=2.6e-12  Score=131.22  Aligned_cols=73  Identities=26%  Similarity=0.317  Sum_probs=70.3

Q ss_pred             CeeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493           54 PTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED  126 (355)
Q Consensus        54 ~~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~  126 (355)
                      ..|+|+||+...+|+|.|+.++||.+||+.|+..+++++++++|||.||+|+|+.+|..|||+||.+||||.+
T Consensus        14 ~~irV~Vkt~~dk~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik   86 (493)
T KOG0010|consen   14 SLIRVTVKTPKDKYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIK   86 (493)
T ss_pred             ceeEEEEecCCcceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEec
Confidence            4699999998889999999999999999999999999999999999999999999999999999999999965

>TIGR00601 rad23 UV excision repair protein Rad23

Probab=99.28  E-value=6.3e-12  Score=126.24  Aligned_cols=71  Identities=23%  Similarity=0.294  Sum_probs=65.5

Q ss_pred             eEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccC---CCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493           56 IRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTG---LHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED  126 (355)
Q Consensus        56 I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TG---Vppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~  126 (355)
                      |+|+||. .+++|.|+|++++||.+||++|+..+|   +++++|||||+||+|+|+.+|++|||++|++|+||..
T Consensus         1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~   75 (378)
T TIGR00601         1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVS   75 (378)
T ss_pred             CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEec
Confidence            4677775 567899999999999999999999999   9999999999999999999999999999999998854

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd01769 UBL Ubiquitin-like domain of UBL

Probab=99.26  E-value=1.2e-11  Score=92.42  Aligned_cols=66  Identities=32%  Similarity=0.402  Sum_probs=60.9

Q ss_pred             EEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493           60 VKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        60 VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~  125 (355)
                      |++ .+..+.+.+++++||++||++|+..+|+++++|+|+|+|+.++|+.+|.+|||++|+.|+++.
T Consensus         2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~   68 (69)
T cd01769           2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL   68 (69)
T ss_pred             eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence            444 367788999999999999999999999999999999999999999999999999999999975

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.

>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1

Probab=99.23  E-value=2e-11  Score=96.61  Aligned_cols=61  Identities=13%  Similarity=0.126  Sum_probs=55.5

Q ss_pred             CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCccc-CCchhhhhcCCC-CCCEEEEe
Q 018493           63 GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKER-DSKAFLDVVGVK-DKSKLVLV  124 (355)
Q Consensus        63 gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~l-dD~~tLs~~GIK-dgSkImLv  124 (355)
                      ++.++.+.|++++||++||.+|++.+|+|+++|+| |.|+.+ +|+.+|++|||+ +|++|+|.
T Consensus        11 ~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~   73 (75)
T cd01799          11 HTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLY   73 (75)
T ss_pred             CCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEE
Confidence            34567799999999999999999999999999999 999997 577999999999 88999984

HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.

>cd01763 Sumo Small ubiquitin-related modifier (SUMO)

Probab=99.14  E-value=2e-10  Score=92.70  Aligned_cols=74  Identities=14%  Similarity=0.198  Sum_probs=68.4

Q ss_pred             CCCeeEEEEEeC-CEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493           52 PPPTIRVRVKYG-SIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        52 ~~~~I~V~VK~g-g~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~  125 (355)
                      ....|+|.|+.- +..+.+.|.+++|+..||.++++..|+++++|+|+|.|+.++++.++.+||+.+|++|.++.
T Consensus         8 ~~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l   82 (87)
T cd01763           8 ISEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVML   82 (87)
T ss_pred             CCCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEE
Confidence            456789999864 67788999999999999999999999999999999999999999999999999999999874

Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.

>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=1.5e-10  Score=88.74  Aligned_cols=68  Identities=24%  Similarity=0.283  Sum_probs=62.8

Q ss_pred             EEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEe
Q 018493           57 RVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLV  124 (355)
Q Consensus        57 ~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv  124 (355)
                      .|+|++ .++.++|++++.++|..+|..|+++.||||.+|+|||.||.+.|+.+-..|++.-||.|+++
T Consensus         2 ~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv   70 (70)
T KOG0005|consen    2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV   70 (70)
T ss_pred             eeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence            466665 45778999999999999999999999999999999999999999999999999999999985

>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B

Probab=99.06  E-value=5.2e-10  Score=89.99  Aligned_cols=70  Identities=23%  Similarity=0.335  Sum_probs=59.5

Q ss_pred             eEEEEEeC--CEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEE-eccCc-----cc-CCchhhhhcCCCCCCEEEEee
Q 018493           56 IRVRVKYG--SIYHEIHINSQATFGELKKLLTGPTGLHHEDQKL-IYKDK-----ER-DSKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        56 I~V~VK~g--g~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKL-IykGK-----~l-dD~~tLs~~GIKdgSkImLv~  125 (355)
                      |+|.|++.  ....+..++++.||++||++|+..+|++|..|+| +|.|+     .+ +|+.+|..||+++|++|+|+.
T Consensus         2 v~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD   80 (84)
T cd01789           2 VTVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVID   80 (84)
T ss_pred             EEEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEe
Confidence            45666654  4445566999999999999999999999999999 58888     34 788899999999999999985

Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.

>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=3.3e-10  Score=115.41  Aligned_cols=75  Identities=23%  Similarity=0.267  Sum_probs=70.7

Q ss_pred             CeeEEEEEeCCEEEEEE-EcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeecCC
Q 018493           54 PTIRVRVKYGSIYHEIH-INSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVEDPI  128 (355)
Q Consensus        54 ~~I~V~VK~gg~~~~V~-V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~p~  128 (355)
                      +...|.|||+|+.|++. ++.++|+..||++|...|||+|++||+++||+.+.|+-.+..++||+|.+|||||.+.
T Consensus         2 ~~~~v~VKW~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt~e   77 (473)
T KOG1872|consen    2 PSDTVIVKWGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGTAE   77 (473)
T ss_pred             CcceEeeeecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeecccc
Confidence            45689999999999998 9999999999999999999999999999999999999899999999999999999644

>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A

Probab=99.01  E-value=6.5e-10  Score=89.26  Aligned_cols=72  Identities=26%  Similarity=0.364  Sum_probs=60.7

Q ss_pred             eeEEEEEeCCE---EEEEEEcCCCCHHHHHHHHhcccCCCccCcEEecc----Ccc----cCCchhhhhcCCCCCCEEEE
Q 018493           55 TIRVRVKYGSI---YHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYK----DKE----RDSKAFLDVVGVKDKSKLVL  123 (355)
Q Consensus        55 ~I~V~VK~gg~---~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIyk----GK~----ldD~~tLs~~GIKdgSkImL  123 (355)
                      .|+|.|.+...   .++..++.+.||++||.+|+..+|+|++.|+|.|.    |..    .+|..+|..||+++|++|++
T Consensus         1 ~v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V   80 (87)
T PF14560_consen    1 VVKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHV   80 (87)
T ss_dssp             EEEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEE
T ss_pred             CEEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEE
Confidence            47888998765   88999999999999999999999999999999877    111    46789999999999999999


Q ss_pred             eec
Q 018493          124 VED  126 (355)
Q Consensus       124 v~~  126 (355)
                      +..
T Consensus        81 ~D~   83 (87)
T PF14560_consen   81 VDT   83 (87)
T ss_dssp             EE-
T ss_pred             EeC
Confidence            863

>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4

Probab=99.01  E-value=2.8e-10  Score=96.92  Aligned_cols=78  Identities=18%  Similarity=0.114  Sum_probs=64.4

Q ss_pred             eEEEEEeCCEEEEEEEcCCCCHHHHHHHHh-----cccCCC--ccCcEEeccCcccCCchhhhhcC------CCCCCEEE
Q 018493           56 IRVRVKYGSIYHEIHINSQATFGELKKLLT-----GPTGLH--HEDQKLIYKDKERDSKAFLDVVG------VKDKSKLV  122 (355)
Q Consensus        56 I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~-----e~TGVp--pe~QKLIykGK~ldD~~tLs~~G------IKdgSkIm  122 (355)
                      |+++...|...=+..+++++||++||++|+     ...|+|  +++|||||.||+|+|+.+|++|+      +....++|
T Consensus         7 ~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~~TmH   86 (113)
T cd01814           7 IKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGVITMH   86 (113)
T ss_pred             EEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCceEEE
Confidence            455555566666778899999999999999     555666  99999999999999999999999      77789999


Q ss_pred             EeecCCchHHH
Q 018493          123 LVEDPISQEKR  133 (355)
Q Consensus       123 Lv~~p~s~E~~  133 (355)
                      |+-.+...+.+
T Consensus        87 vvlr~~~~~~~   97 (113)
T cd01814          87 VVVQPPLADKK   97 (113)
T ss_pred             EEecCCCCCcc
Confidence            99876654443

NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.

>cd01795 USP48_C USP ubiquitin-specific protease

Probab=98.99  E-value=6.3e-10  Score=93.10  Aligned_cols=60  Identities=27%  Similarity=0.282  Sum_probs=55.4

Q ss_pred             EEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCccc-CCchhhhhcCCCCCCEEEEeec
Q 018493           67 HEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKER-DSKAFLDVVGVKDKSKLVLVED  126 (355)
Q Consensus        67 ~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~l-dD~~tLs~~GIKdgSkImLv~~  126 (355)
                      ..+.|++++||++||.+|.+.++|+|.+|||+|.|+.| ||..+|++|||-.||.|+|+.+
T Consensus        17 ~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llid   77 (107)
T cd01795          17 KALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKAD   77 (107)
T ss_pred             ceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEec
Confidence            45679999999999999999999999999999999985 6789999999999999999863

The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,

>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins

Probab=98.91  E-value=3.3e-09  Score=81.47  Aligned_cols=69  Identities=17%  Similarity=0.331  Sum_probs=62.4

Q ss_pred             eEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCc-cCcEEeccCcccCCchhhhhcCCCCCCEEEEe
Q 018493           56 IRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHH-EDQKLIYKDKERDSKAFLDVVGVKDKSKLVLV  124 (355)
Q Consensus        56 I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVpp-e~QKLIykGK~ldD~~tLs~~GIKdgSkImLv  124 (355)
                      |+|+|+. ++..+.+.|.++++|+.|++.+++..|+++ +..+|+|.|+.++++.++.+||+++|+.|.++
T Consensus         1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~   71 (72)
T PF11976_consen    1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVI   71 (72)
T ss_dssp             EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEE
Confidence            6777776 467899999999999999999999999999 99999999999999999999999999999886

SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....

>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]

Probab=98.83  E-value=4.8e-09  Score=103.15  Aligned_cols=72  Identities=26%  Similarity=0.329  Sum_probs=66.4

Q ss_pred             eEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccC--CCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeecC
Q 018493           56 IRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTG--LHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVEDP  127 (355)
Q Consensus        56 I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TG--Vppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~p  127 (355)
                      ++|+||+ .+.++.|++.++.||.+||+.|+...|  +|...|||||.||.|.|+.+|.+|+|++++.|.||.++
T Consensus         1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK   75 (340)
T KOG0011|consen    1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSK   75 (340)
T ss_pred             CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEec
Confidence            4678886 567889999999999999999999999  99999999999999999999999999999999888654

>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]

Probab=98.78  E-value=2.2e-09  Score=90.91  Aligned_cols=66  Identities=18%  Similarity=0.280  Sum_probs=61.7

Q ss_pred             EEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEe
Q 018493           59 RVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLV  124 (355)
Q Consensus        59 ~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv  124 (355)
                      -+..-|++..+++.+++||..||..|....||||+.|+|+|.||.++|..+|.+|||+.-|+|+++
T Consensus         5 ~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~   70 (128)
T KOG0003|consen    5 VKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV   70 (128)
T ss_pred             EEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhh
Confidence            344567888899999999999999999999999999999999999999999999999999999987

>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]

Probab=98.75  E-value=5.9e-09  Score=93.04  Aligned_cols=67  Identities=21%  Similarity=0.310  Sum_probs=60.6

Q ss_pred             EEEEeC-CEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEe
Q 018493           58 VRVKYG-SIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLV  124 (355)
Q Consensus        58 V~VK~g-g~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv  124 (355)
                      |.|++- +.+...++.+++|+..+|+.|+...|||+++|+|||.|+.|+|..+|++|+|+.-++|+|+
T Consensus         3 ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~   70 (156)
T KOG0004|consen    3 IFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV   70 (156)
T ss_pred             cchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEE
Confidence            445542 3567788999999999999999999999999999999999999999999999999999998

>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13

Probab=98.48  E-value=2.5e-07  Score=72.86  Aligned_cols=52  Identities=29%  Similarity=0.314  Sum_probs=47.2

Q ss_pred             cCCCCHHHHHHHHhcccC-CCccCcEEe--ccCcccCCchhhhhcCCCCCCEEEE
Q 018493           72 NSQATFGELKKLLTGPTG-LHHEDQKLI--YKDKERDSKAFLDVVGVKDKSKLVL  123 (355)
Q Consensus        72 ~~~sTVgdLK~~I~e~TG-Vppe~QKLI--ykGK~ldD~~tLs~~GIKdgSkImL  123 (355)
                      ++++||++||..|+...+ +++++|+|.  |+|+.+.|+.+|.+|||++|++|++
T Consensus        20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv   74 (77)
T cd01801          20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV   74 (77)
T ss_pred             CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence            678999999999999876 578999985  8999999999999999999999886

Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.

>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]

Probab=98.42  E-value=2.5e-07  Score=101.50  Aligned_cols=72  Identities=28%  Similarity=0.322  Sum_probs=66.7

Q ss_pred             eEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeecCC
Q 018493           56 IRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVEDPI  128 (355)
Q Consensus        56 I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~p~  128 (355)
                      +.|+||+ ...++.+.|...+||.+||+.|...+.|+.+.|||||.|++|.|+.++.+||| ||-+|||++.+.
T Consensus         3 ~~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverpp   75 (1143)
T KOG4248|consen    3 PNVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPP   75 (1143)
T ss_pred             cceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeeccCC
Confidence            3488887 56889999999999999999999999999999999999999999999999999 999999997643

>PLN02560 enoyl-CoA reductase

Probab=98.39  E-value=6e-07  Score=88.35  Aligned_cols=57  Identities=23%  Similarity=0.257  Sum_probs=51.4

Q ss_pred             EEEEcCCCCHHHHHHHHhcccCC-CccCcEEecc---Cc----ccCCchhhhhcCCCCCCEEEEe
Q 018493           68 EIHINSQATFGELKKLLTGPTGL-HHEDQKLIYK---DK----ERDSKAFLDVVGVKDKSKLVLV  124 (355)
Q Consensus        68 ~V~V~~~sTVgdLK~~I~e~TGV-ppe~QKLIyk---GK----~ldD~~tLs~~GIKdgSkImLv  124 (355)
                      .|++++++||+|||+.|++..++ ++++|||+|.   |+    .++|+.+|+++||++|++|++-
T Consensus        17 ~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~k   81 (308)
T PLN02560         17 GLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVFK   81 (308)
T ss_pred             eEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEEE
Confidence            78999999999999999999987 8999999982   43    6789999999999999998885

>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A

Probab=98.37  E-value=1.2e-06  Score=74.49  Aligned_cols=73  Identities=18%  Similarity=0.226  Sum_probs=52.6

Q ss_pred             eEEEEE--eCCEEEEEEEcCCCCHHHHHHHHhccc-------CCCccCcEEeccCcccCCchhhhhcCCCCCC------E
Q 018493           56 IRVRVK--YGSIYHEIHINSQATFGELKKLLTGPT-------GLHHEDQKLIYKDKERDSKAFLDVVGVKDKS------K  120 (355)
Q Consensus        56 I~V~VK--~gg~~~~V~V~~~sTVgdLK~~I~e~T-------GVppe~QKLIykGK~ldD~~tLs~~GIKdgS------k  120 (355)
                      |.|++.  .|..+.++.+++.+||++||+.|....       -..+...||||.||.|+|+.+|.+|++..|+      +
T Consensus         3 i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~v   82 (111)
T PF13881_consen    3 IELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPTV   82 (111)
T ss_dssp             EEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--EE
T ss_pred             EEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCEE
Confidence            444444  344489999999999999999998542       2235789999999999999999999999887      4


Q ss_pred             EEEeecCC
Q 018493          121 LVLVEDPI  128 (355)
Q Consensus       121 ImLv~~p~  128 (355)
                      +||+..+.
T Consensus        83 mHlvvrp~   90 (111)
T PF13881_consen   83 MHLVVRPN   90 (111)
T ss_dssp             EEEEE-SS
T ss_pred             EEEEecCC
Confidence            67776544

>cd00196 UBQ Ubiquitin-like proteins

Probab=98.35  E-value=1.2e-06  Score=60.40  Aligned_cols=63  Identities=30%  Similarity=0.364  Sum_probs=57.8

Q ss_pred             CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493           63 GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        63 gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~  125 (355)
                      ++....+.+++..|+++|++.|.+.+|++++.++|++.|..+++...+..+++.+|+.|+++.
T Consensus         6 ~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~   68 (69)
T cd00196           6 DGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP   68 (69)
T ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence            456677888899999999999999999999999999999999988888999999999999874

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.

>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=98.28  E-value=3.9e-06  Score=61.55  Aligned_cols=65  Identities=18%  Similarity=0.258  Sum_probs=60.1

Q ss_pred             eCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493           62 YGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED  126 (355)
Q Consensus        62 ~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~  126 (355)
                      .-++.+.+.+.+..+|..+|.+|+...|+++..|.|+|+|+.+.|..+|.+|+|..++.+.|...
T Consensus         7 ~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~   71 (75)
T KOG0001|consen    7 LDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLS   71 (75)
T ss_pred             cCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEe
Confidence            45667788999999999999999999999999999999999999999999999999999998764

>cd01788 ElonginB Ubiquitin-like domain of Elongin B

Probab=98.27  E-value=2.4e-06  Score=73.22  Aligned_cols=70  Identities=20%  Similarity=0.170  Sum_probs=61.4

Q ss_pred             eEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCC-------CCCCEEEEee
Q 018493           56 IRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGV-------KDKSKLVLVE  125 (355)
Q Consensus        56 I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GI-------KdgSkImLv~  125 (355)
                      +.|.|+....+|-++..++.||-+||++|+..+.+||+.|+|+-.+-.++|+.+|++||+       ..-+.|-|.-
T Consensus         3 vFlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~   79 (119)
T cd01788           3 VFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAF   79 (119)
T ss_pred             eEEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEE
Confidence            678888888889999999999999999999999999999999933345999999999999       6677877764

Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.

>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway

Probab=98.19  E-value=3.7e-06  Score=67.61  Aligned_cols=70  Identities=21%  Similarity=0.319  Sum_probs=41.8

Q ss_pred             eeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEec--cCc-cc--CCchhhhhcCCCCCCEEEEe
Q 018493           55 TIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIY--KDK-ER--DSKAFLDVVGVKDKSKLVLV  124 (355)
Q Consensus        55 ~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIy--kGK-~l--dD~~tLs~~GIKdgSkImLv  124 (355)
                      .|.|+|......+-|++++++|+++|+++|.+.++++...|.|..  .++ .+  .++.+|+++||+.||-|+|-
T Consensus         4 ~milRvrS~dG~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~   78 (80)
T PF11543_consen    4 SMILRVRSKDGMKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK   78 (80)
T ss_dssp             --EEEEE-SSEEEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred             cEEEEEECCCCCEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence            455666665556778899999999999999999999999888752  121 23  57899999999999999873

Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.

>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []

Probab=97.67  E-value=8.6e-05  Score=58.80  Aligned_cols=69  Identities=26%  Similarity=0.280  Sum_probs=52.6

Q ss_pred             eeEEEEEeCC-EEEEEEEcCCCCHHHHHHHHhcccCCCcc------CcEEe-ccCcccCCchhhhhcCCCCCCEEEE
Q 018493           55 TIRVRVKYGS-IYHEIHINSQATFGELKKLLTGPTGLHHE------DQKLI-YKDKERDSKAFLDVVGVKDKSKLVL  123 (355)
Q Consensus        55 ~I~V~VK~gg-~~~~V~V~~~sTVgdLK~~I~e~TGVppe------~QKLI-ykGK~ldD~~tLs~~GIKdgSkImL  123 (355)
                      .++|+|.++. ..+++.+|.+.+|++|...|.+..+.+..      .-+|. -+|..++++.+|.++||.||+.|+|
T Consensus         2 ~~rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L   78 (79)
T PF08817_consen    2 LCRVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL   78 (79)
T ss_dssp             EEEEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred             EEEEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence            4788999975 89999999999999999999998887543      24666 6788899999999999999999987

Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.

>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly

Probab=97.26  E-value=0.0006  Score=53.13  Aligned_cols=64  Identities=16%  Similarity=0.202  Sum_probs=48.4

Q ss_pred             EEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEE
Q 018493           60 VKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVL  123 (355)
Q Consensus        60 VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImL  123 (355)
                      |.+++.++.|.+.+.+++.++-+..+.+.|+.+++-.|.|++|.+|-+.+++-.|+-+|++|-|
T Consensus         2 i~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL   65 (65)
T PF11470_consen    2 ICYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL   65 (65)
T ss_dssp             E-TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred             CccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence            6678889999999999999999999999999999999999999999999999999999999865

TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.

>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]

Probab=97.09  E-value=0.00056  Score=67.96  Aligned_cols=59  Identities=14%  Similarity=0.285  Sum_probs=51.6

Q ss_pred             EEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEe
Q 018493           66 YHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLV  124 (355)
Q Consensus        66 ~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv  124 (355)
                      ..+|+|+.+..+.+||+.++..+|||+++.++||.||+|.++.++..+.+..-+.+++|
T Consensus        15 ~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~   73 (446)
T KOG0006|consen   15 GLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIM   73 (446)
T ss_pred             ceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhh
Confidence            35677888899999999999999999999999999999999999997766666666555

>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2

Probab=96.71  E-value=0.0055  Score=49.34  Aligned_cols=70  Identities=20%  Similarity=0.286  Sum_probs=60.4

Q ss_pred             eEEEEE-eCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEecc---Ccc--cCCchhhhhcCCCCCCEEEEeec
Q 018493           56 IRVRVK-YGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYK---DKE--RDSKAFLDVVGVKDKSKLVLVED  126 (355)
Q Consensus        56 I~V~VK-~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIyk---GK~--ldD~~tLs~~GIKdgSkImLv~~  126 (355)
                      |.|+|+ ||.....+.|+|+.+|..||..|....|++= .|+|-|.   |+.  +.+..+|.+|||=.+-.|.|++.
T Consensus         1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT   76 (80)
T cd01811           1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLET   76 (80)
T ss_pred             CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEec
Confidence            568888 6777788999999999999999999999985 8999984   443  78999999999998888888863

OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.

>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi

Probab=96.71  E-value=0.0025  Score=53.23  Aligned_cols=62  Identities=16%  Similarity=0.117  Sum_probs=45.0

Q ss_pred             eEEEEEeCCEEEEEEEc--CCCCHHHHHHHHhccc--CCCccCcEEeccCcccCCchhhhhcCCCC
Q 018493           56 IRVRVKYGSIYHEIHIN--SQATFGELKKLLTGPT--GLHHEDQKLIYKDKERDSKAFLDVVGVKD  117 (355)
Q Consensus        56 I~V~VK~gg~~~~V~V~--~~sTVgdLK~~I~e~T--GVppe~QKLIykGK~ldD~~tLs~~GIKd  117 (355)
                      |+|++..+---.+++|+  ...||.+||++|-+..  ...-.++||||.||.|.|...|...-..+
T Consensus         3 l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~l~~~   68 (97)
T PF10302_consen    3 LTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSELKLP   68 (97)
T ss_pred             EEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhhhccc
Confidence            45555543222445555  7789999999999987  34446899999999999999887765444

They contain a characteristic GFDRL sequence motif.

>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]

Probab=96.70  E-value=0.0026  Score=53.49  Aligned_cols=61  Identities=23%  Similarity=0.162  Sum_probs=53.1

Q ss_pred             eEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCc--ccCCchhhhhcCCC
Q 018493           56 IRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDK--ERDSKAFLDVVGVK  116 (355)
Q Consensus        56 I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK--~ldD~~tLs~~GIK  116 (355)
                      +.|.|+-...+|-++..++.||-+||.+|+..+.-|++.|+|+--.-  .|+|..+|.++|..
T Consensus         3 ~f~~VrR~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gft   65 (110)
T KOG4495|consen    3 VFLRVRRHKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFT   65 (110)
T ss_pred             eeeeeeecceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhcccc
Confidence            56788887788888999999999999999999999999999975343  49999999999764

>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]

Probab=96.47  E-value=0.0046  Score=58.30  Aligned_cols=74  Identities=20%  Similarity=0.237  Sum_probs=60.4

Q ss_pred             eeEEEEEeCCEE--EEEEEcCCCCHHHHHHHHhcccCCCccCcEEe-ccC------cccCCchhhhhcCCCCCCEEEEee
Q 018493           55 TIRVRVKYGSIY--HEIHINSQATFGELKKLLTGPTGLHHEDQKLI-YKD------KERDSKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        55 ~I~V~VK~gg~~--~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLI-ykG------K~ldD~~tLs~~GIKdgSkImLv~  125 (355)
                      +|+|.|.+....  .+..++.+.||.+||.+|+.+||.+++.++|- |+|      ..-++++.|..|++.+|..||++.
T Consensus         1 ~v~v~Iss~~~~~~~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD   80 (234)
T KOG3206|consen    1 MVRVVISSSLNDFRTEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVID   80 (234)
T ss_pred             CeEEEEecccccchhhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEe
Confidence            367777776544  45668899999999999999999999999984 666      124677899999999999999997


Q ss_pred             cCC
Q 018493          126 DPI  128 (355)
Q Consensus       126 ~p~  128 (355)
                      ..+
T Consensus        81 ~~~   83 (234)
T KOG3206|consen   81 SNA   83 (234)
T ss_pred             cCc
Confidence            544

>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]

Probab=96.38  E-value=0.016  Score=48.77  Aligned_cols=73  Identities=14%  Similarity=0.218  Sum_probs=66.7

Q ss_pred             CCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493           53 PPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        53 ~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~  125 (355)
                      ...|+++|+- ++....+.|-.++.+.-|...-++..|++.+..+++|.|+.+.+..+=.+++..+|+.|-++.
T Consensus        18 ~~hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~   91 (99)
T KOG1769|consen   18 SEHINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQ   91 (99)
T ss_pred             cceEEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEe
Confidence            4679999995 566678889999999999999999999999999999999999999999999999999998774

>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.29  E-value=0.0018  Score=50.79  Aligned_cols=60  Identities=25%  Similarity=0.227  Sum_probs=49.3

Q ss_pred             CEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEE
Q 018493           64 SIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVL  123 (355)
Q Consensus        64 g~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImL  123 (355)
                      |++..|.-.+++||||||+.|+..||-.++...|=--+-..+|.-+|++|.|++|--+-|
T Consensus        11 GKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lel   70 (73)
T KOG3493|consen   11 GKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLEL   70 (73)
T ss_pred             CceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEE
Confidence            455666778999999999999999999999776653344588999999999999977654

>COG5417 Uncharacterized small protein [Function unknown]

Probab=96.25  E-value=0.012  Score=47.45  Aligned_cols=68  Identities=12%  Similarity=0.099  Sum_probs=57.1

Q ss_pred             EEEEE-eCCEEEEEEEcCCCCHHHHHHHHhcccCCCc-----cCcEEeccCcccCCchhhhhcCCCCCCEEEEe
Q 018493           57 RVRVK-YGSIYHEIHINSQATFGELKKLLTGPTGLHH-----EDQKLIYKDKERDSKAFLDVVGVKDKSKLVLV  124 (355)
Q Consensus        57 ~V~VK-~gg~~~~V~V~~~sTVgdLK~~I~e~TGVpp-----e~QKLIykGK~ldD~~tLs~~GIKdgSkImLv  124 (355)
                      +|-.+ |++.+|++.+|.+-++..|-..+.+...|..     ...|..-|++.+.++..|.+|||.+|+.|.++
T Consensus         8 TvD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~LeiL   81 (81)
T COG5417           8 TVDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEIL   81 (81)
T ss_pred             EEEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEeC
Confidence            33334 5889999999999999999999988766653     35789999999999999999999999988653

>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast

Probab=95.91  E-value=0.035  Score=43.58  Aligned_cols=71  Identities=15%  Similarity=0.261  Sum_probs=57.4

Q ss_pred             CCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccC-cEEe--ccCcccCCc--hhhhhcCCCCCCEEEE
Q 018493           53 PPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHED-QKLI--YKDKERDSK--AFLDVVGVKDKSKLVL  123 (355)
Q Consensus        53 ~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~-QKLI--ykGK~ldD~--~tLs~~GIKdgSkImL  123 (355)
                      ...++|.|+. +|..+.-.+..++|+.+|.+-|......+... ..|+  |-.+.+.+.  .+|.++|+.+++.|+|
T Consensus         4 ~~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v   80 (82)
T PF00789_consen    4 SDVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIV   80 (82)
T ss_dssp             SSEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEE
T ss_pred             CCEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEE
Confidence            4667888886 45678888999999999999999988887765 7776  565665433  6999999999999887

The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....

>smart00166 UBX Domain present in ubiquitin-regulatory proteins

Probab=95.88  E-value=0.065  Score=42.31  Aligned_cols=70  Identities=13%  Similarity=0.118  Sum_probs=55.1

Q ss_pred             CeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEe--ccCcccCC---chhhhhcCCCCCCEEEE
Q 018493           54 PTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLI--YKDKERDS---KAFLDVVGVKDKSKLVL  123 (355)
Q Consensus        54 ~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLI--ykGK~ldD---~~tLs~~GIKdgSkImL  123 (355)
                      +..+|.|+. +|.+....+++++|+.+|.+-|....+.......|+  |-.|.+.+   +.+|.++|+.+++.|+|
T Consensus         3 ~~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v   78 (80)
T smart00166        3 DQCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL   78 (80)
T ss_pred             CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence            456777774 567778889999999999999977777776777886  66666543   57999999998888876

Present in FAF1 and Shp1p.

>cd01767 UBX UBX (ubiquitin regulatory X) domain

Probab=95.49  E-value=0.12  Score=40.34  Aligned_cols=68  Identities=12%  Similarity=0.192  Sum_probs=50.0

Q ss_pred             eeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEe--ccCcccC---CchhhhhcCCCCCCEEEEe
Q 018493           55 TIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLI--YKDKERD---SKAFLDVVGVKDKSKLVLV  124 (355)
Q Consensus        55 ~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLI--ykGK~ld---D~~tLs~~GIKdgSkImLv  124 (355)
                      ..+|.|+. +|......++.++|+++|.+-|.....- .....|+  |-.+.+.   ++.+|.++|+. ++.+++.
T Consensus         2 ~t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~-~s~~~~~   75 (77)
T cd01767           2 TTKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLV-NEVVFQR   75 (77)
T ss_pred             cEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCc-cceEEEE
Confidence            45566664 4566777899999999999999876543 5566776  5566653   58899999999 5666654

The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.

>KOG4361 consensus BCL2-associated athanogene-like proteins and related BAG family chaperone regulators [Signal transduction mechanisms]

Probab=95.45  E-value=0.0073  Score=60.73  Aligned_cols=51  Identities=33%  Similarity=0.476  Sum_probs=40.3

Q ss_pred             hhHHHHHHHHHh--CCCcchhhHhhHHHHHHHHHHhccCCCCChhhHHHHHHHHH
Q 018493          162 GQVSALESIITK--GGKVAEKDVLNLIELLMNQLLKLDGIMADGDVKLQRKMQVR  214 (355)
Q Consensus       162 ~ev~~LE~~I~~--g~Kv~eke~~~LsE~LMq~LLKLD~IeaeGdaR~qRK~~Vk  214 (355)
                      +++..+|..+.+  |++. ++.+.+|-|+|.+.||+||+|++. ++|..||..|+
T Consensus       292 ~~~~~~~~~v~sf~g~~~-~k~y~~~Ee~lt~~ll~ld~~d~~-~~~~ar~~~~~  344 (344)
T KOG4361|consen  292 EKVLELEGAVESFEGPRT-DKSYAKLEEFLTKNLLALDSVDPQ-SVRRARKEAVR  344 (344)
T ss_pred             hhhhhhhhhhhhcCCCcc-chhHHHHHHhcccccchhhccCcc-hhhhhhhhhcC
Confidence            344444444443  4444 999999999999999999999998 99999999874

>smart00666 PB1 PB1 domain

Probab=95.39  E-value=0.05  Score=42.42  Aligned_cols=47  Identities=23%  Similarity=0.518  Sum_probs=42.5

Q ss_pred             eeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccC
Q 018493           55 TIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKD  101 (355)
Q Consensus        55 ~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykG  101 (355)
                      .++|+|.+++..+.+.++...|+.+|+.+|....++.....+|-|+.
T Consensus         1 ~~~vK~~~~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~D   47 (81)
T smart00666        1 TVDVKLRYGGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQD   47 (81)
T ss_pred             CccEEEEECCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEEC
Confidence            36889999999999999999999999999999999988788888874

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

>PF15044 CLU_N: Mitochondrial function, CLU-N-term

Probab=95.04  E-value=0.081  Score=42.16  Aligned_cols=59  Identities=22%  Similarity=0.320  Sum_probs=50.5

Q ss_pred             EcCCCCHHHHHHHHhcccC-CCccCcEEeccCcccCCchhhhhc-CCCCCCEEEEeecCCc
Q 018493           71 INSQATFGELKKLLTGPTG-LHHEDQKLIYKDKERDSKAFLDVV-GVKDKSKLVLVEDPIS  129 (355)
Q Consensus        71 V~~~sTVgdLK~~I~e~TG-Vppe~QKLIykGK~ldD~~tLs~~-GIKdgSkImLv~~p~s  129 (355)
                      |.++++|.||++.|..... ..-....|.|+|+.++|...|+++ |+++|++|.|+.+|..
T Consensus         1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~pYt   61 (76)
T PF15044_consen    1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEEPYT   61 (76)
T ss_pred             CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEecCCC
Confidence            4678899999999998755 445678899999999999998887 7999999999998874

>KOG0013 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.31  E-value=0.033  Score=52.79  Aligned_cols=69  Identities=17%  Similarity=0.253  Sum_probs=59.1

Q ss_pred             eEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEe
Q 018493           56 IRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLV  124 (355)
Q Consensus        56 I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv  124 (355)
                      .++++..-++.+-+.++..+|++++|..+..+-|+.+-.|+++|.|+.+-|...|..|+|..|++-.|-
T Consensus       148 lk~rlTtT~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvlq  216 (231)
T KOG0013|consen  148 LKLRLTTTREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVLQ  216 (231)
T ss_pred             hHHHhhhhhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEEE
Confidence            445555445666777888999999999999999999999999999999999999999999999765554

>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins

Probab=94.22  E-value=0.11  Score=40.50  Aligned_cols=47  Identities=38%  Similarity=0.650  Sum_probs=42.9

Q ss_pred             eeEEEEEeCCEEEE-EEEcCCCCHHHHHHHHhcccCCCccCcEEeccC
Q 018493           55 TIRVRVKYGSIYHE-IHINSQATFGELKKLLTGPTGLHHEDQKLIYKD  101 (355)
Q Consensus        55 ~I~V~VK~gg~~~~-V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykG  101 (355)
                      +++|++.|++..+- +.++...++.+|+..|+...+++....+|-|..
T Consensus         1 t~~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D   48 (84)
T PF00564_consen    1 TVRVKVRYGGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKD   48 (84)
T ss_dssp             SEEEEEEETTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEE
T ss_pred             CEEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeC
Confidence            47899999998888 999999999999999999999998888998875

The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....

>cd01770 p47_UBX p47-like ubiquitin domain

Probab=93.70  E-value=0.45  Score=38.06  Aligned_cols=68  Identities=13%  Similarity=0.200  Sum_probs=50.5

Q ss_pred             CeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCC-ccCcEEe--ccCccc-CCchhhhhcCCCCCCEE
Q 018493           54 PTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLH-HEDQKLI--YKDKER-DSKAFLDVVGVKDKSKL  121 (355)
Q Consensus        54 ~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVp-pe~QKLI--ykGK~l-dD~~tLs~~GIKdgSkI  121 (355)
                      |..+|.|.. +|.+....++.++||++|.+-|....+-+ .....|+  |=.|.+ +++.+|.++|+.+...+
T Consensus         3 p~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v~   75 (79)
T cd01770           3 PTTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVIV   75 (79)
T ss_pred             CeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEEE
Confidence            456667764 45667778999999999999999876433 3556776  667774 56889999999965433

p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd01772 SAKS1_UBX SAKS1-like UBX domain

Probab=93.10  E-value=0.74  Score=36.52  Aligned_cols=68  Identities=12%  Similarity=0.205  Sum_probs=51.8

Q ss_pred             eeEEEEE-eCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEe--ccCcccC---CchhhhhcCCCCCCEEEE
Q 018493           55 TIRVRVK-YGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLI--YKDKERD---SKAFLDVVGVKDKSKLVL  123 (355)
Q Consensus        55 ~I~V~VK-~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLI--ykGK~ld---D~~tLs~~GIKdgSkImL  123 (355)
                      ..+|.|+ .+|......++.++|+.+|.+-|....+.. ....|+  |--|.+.   .+.+|.++|+.+...|+|
T Consensus         4 ~~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v   77 (79)
T cd01772           4 ETRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV   77 (79)
T ss_pred             EEEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence            3556666 355667778999999999999998765433 556776  6677754   257999999999988876

SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain

Probab=93.10  E-value=0.84  Score=37.22  Aligned_cols=71  Identities=18%  Similarity=0.322  Sum_probs=57.4

Q ss_pred             CCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEe--ccCcc---cCCchhhhhcCCCCCCEEEEe
Q 018493           53 PPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLI--YKDKE---RDSKAFLDVVGVKDKSKLVLV  124 (355)
Q Consensus        53 ~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLI--ykGK~---ldD~~tLs~~GIKdgSkImLv  124 (355)
                      ++.-+|.|+. +|....-.+..+.++.+|...|.. .|.+++..+|+  |==|.   .+.+.+|.++|+.+..+|+|-
T Consensus         3 ~~~t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq   79 (82)
T cd01773           3 GPKARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ   79 (82)
T ss_pred             CCeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEe
Confidence            5666777775 567778889999999999999998 57788999998  44444   355679999999999999874

Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]

Probab=92.83  E-value=0.081  Score=53.27  Aligned_cols=63  Identities=22%  Similarity=0.136  Sum_probs=46.9

Q ss_pred             CCeeEEEEEeCCEEE-EEEEcC--CCCHHHHHHHHhcccCCC--ccCcEEeccCcccCCchhhhhcCC
Q 018493           53 PPTIRVRVKYGSIYH-EIHINS--QATFGELKKLLTGPTGLH--HEDQKLIYKDKERDSKAFLDVVGV  115 (355)
Q Consensus        53 ~~~I~V~VK~gg~~~-~V~V~~--~sTVgdLK~~I~e~TGVp--pe~QKLIykGK~ldD~~tLs~~GI  115 (355)
                      .-.+++.||.....| +++|..  .-||++||..++...--.  +.+|||||.||.+.|...|++.=+
T Consensus         7 e~~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~lr   74 (391)
T KOG4583|consen    7 EFPVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWLR   74 (391)
T ss_pred             CcceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHHH
Confidence            345778888766555 355554  459999999999875332  358999999999999988887633

>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis

Probab=92.74  E-value=0.3  Score=39.80  Aligned_cols=47  Identities=19%  Similarity=0.290  Sum_probs=40.2

Q ss_pred             eEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcc
Q 018493           56 IRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKE  103 (355)
Q Consensus        56 I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~  103 (355)
                      ..|+|.+.. ++-|.+++..++.+|+++|.++.++|++..+|-|+...
T Consensus         3 ~vvKV~f~~-tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde~   49 (80)
T cd06406           3 YVVKVHFKY-TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSEA   49 (80)
T ss_pred             eEEEEEEEE-EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccCC
Confidence            345555555 78899999999999999999999999999999998653

PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain

>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity

Probab=92.45  E-value=0.27  Score=38.06  Aligned_cols=46  Identities=30%  Similarity=0.509  Sum_probs=39.8

Q ss_pred             eEEEEEeCCEEEEEEEc-CCCCHHHHHHHHhcccCCCccCcEEeccC
Q 018493           56 IRVRVKYGSIYHEIHIN-SQATFGELKKLLTGPTGLHHEDQKLIYKD  101 (355)
Q Consensus        56 I~V~VK~gg~~~~V~V~-~~sTVgdLK~~I~e~TGVppe~QKLIykG  101 (355)
                      |+|++.+++..+.+.++ ...|+.+|+.+|....+++.....|-|+.
T Consensus         1 ~~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D   47 (81)
T cd05992           1 VRVKVKYGGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPD   47 (81)
T ss_pred             CcEEEEecCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeC
Confidence            57899999989999999 89999999999999999987666666665

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium)

Probab=92.35  E-value=0.34  Score=39.20  Aligned_cols=46  Identities=26%  Similarity=0.363  Sum_probs=39.3

Q ss_pred             eEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCc-cCcEEeccC
Q 018493           56 IRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHH-EDQKLIYKD  101 (355)
Q Consensus        56 I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVpp-e~QKLIykG  101 (355)
                      |+|++.+|+..+-+.++++.++.+|++.|....++.. ....|-|..
T Consensus         1 ~~vK~~~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~D   47 (82)
T cd06407           1 VRVKATYGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLD   47 (82)
T ss_pred             CEEEEEeCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEEC
Confidence            5789999999999999999999999999999999865 455555544

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte

>PRK06437 hypothetical protein; Provisional

Probab=92.14  E-value=0.6  Score=36.11  Aligned_cols=60  Identities=27%  Similarity=0.401  Sum_probs=47.7

Q ss_pred             CeeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493           54 PTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        54 ~~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~  125 (355)
                      .+|+|+   |+....++++...|+.+|=+.    .|++++...+..+|....     .++-|++|++|-++.
T Consensus         3 ~~~~v~---g~~~~~~~i~~~~tv~dLL~~----Lgi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~   62 (67)
T PRK06437          3 AMIRVK---GHINKTIEIDHELTVNDIIKD----LGLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILE   62 (67)
T ss_pred             ceEEec---CCcceEEEcCCCCcHHHHHHH----cCCCCccEEEEECCEECC-----CceEcCCCCEEEEEe
Confidence            345554   767778888888999998766    488888888889999876     566889999998874

>cd01771 Faf1_UBX Faf1 UBX domain

Probab=91.80  E-value=1.5  Score=35.24  Aligned_cols=69  Identities=17%  Similarity=0.301  Sum_probs=54.6

Q ss_pred             CeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEe--ccCccc---CCchhhhhcCCCCCCEEEE
Q 018493           54 PTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLI--YKDKER---DSKAFLDVVGVKDKSKLVL  123 (355)
Q Consensus        54 ~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLI--ykGK~l---dD~~tLs~~GIKdgSkImL  123 (355)
                      +.++|.|+. +|....-.+..++++++|..-|... |.+++..+|+  |==|.+   +.+.+|.++|+.+...|+|
T Consensus         3 ~~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~V   77 (80)
T cd01771           3 PISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLIL   77 (80)
T ss_pred             CeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEE
Confidence            566777775 4566677899999999999999875 7788889997  555554   4467999999998888877

Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.32  E-value=0.29  Score=49.41  Aligned_cols=72  Identities=15%  Similarity=0.171  Sum_probs=55.4

Q ss_pred             CeeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEec---cCcc-----cCCchhhhhcCCCCCCEEEEee
Q 018493           54 PTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIY---KDKE-----RDSKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        54 ~~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIy---kGK~-----ldD~~tLs~~GIKdgSkImLv~  125 (355)
                      ..+++...+....-..-|.-+-||-||+..+..+.||-+.++||+|   .||.     .+.+.+|..|+|.+|+.+++=+
T Consensus       337 krvk~l~~~~~v~~s~~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lvqe  416 (418)
T KOG2982|consen  337 KRVKALNSGPKVIASGLICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLVQE  416 (418)
T ss_pred             heeeeeccCCccccceEEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeeeec
Confidence            3344444444444555666677999999999999999999999996   3554     4667899999999999988743

>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain

Probab=91.11  E-value=1.7  Score=35.30  Aligned_cols=69  Identities=12%  Similarity=0.098  Sum_probs=51.8

Q ss_pred             CeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccC--cccC--------CchhhhhcCCCCCCEEE
Q 018493           54 PTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKD--KERD--------SKAFLDVVGVKDKSKLV  122 (355)
Q Consensus        54 ~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykG--K~ld--------D~~tLs~~GIKdgSkIm  122 (355)
                      ..++|.|+. +|....-.+..+.|+.+|..-|.. .+..++...|++.=  |.+.        .+.+|.++||.+...|+
T Consensus         3 ~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~-~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~   81 (85)
T cd01774           3 DTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFS-LKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLF   81 (85)
T ss_pred             ceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-CCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEE
Confidence            356667764 456677789999999999999975 45566888888644  5553        46799999999777766


Q ss_pred             E
Q 018493          123 L  123 (355)
Q Consensus       123 L  123 (355)
                      |
T Consensus        82 V   82 (85)
T cd01774          82 V   82 (85)
T ss_pred             E
Confidence            5

Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]

Probab=90.91  E-value=0.54  Score=39.44  Aligned_cols=71  Identities=14%  Similarity=0.212  Sum_probs=62.4

Q ss_pred             CCeeEEEEE-eCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEE
Q 018493           53 PPTIRVRVK-YGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVL  123 (355)
Q Consensus        53 ~~~I~V~VK-~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImL  123 (355)
                      ...|.++|. .++...-+.|-.+.++.-|-+..+...|-.-+..|++|.|+..+-+.+=.+++..+|+.|-.
T Consensus        22 t~hinLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEa   93 (103)
T COG5227          22 TKHINLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEA   93 (103)
T ss_pred             ccccceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHH
Confidence            346888888 46777778899999999999999999999999999999999999999999999999876643

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=89.71  E-value=6.2  Score=43.53  Aligned_cols=68  Identities=21%  Similarity=0.263  Sum_probs=52.6

Q ss_pred             eeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcc--cCCchhhhhcCCCCCCEEEEe
Q 018493           55 TIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKE--RDSKAFLDVVGVKDKSKLVLV  124 (355)
Q Consensus        55 ~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~--ldD~~tLs~~GIKdgSkImLv  124 (355)
                      .|.|.-......|.+.++++.|+..|+.+|+..||||.+.|-|+|.|..  +.|.....--|+  .+-|+++
T Consensus       315 vvhiFs~~~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~~h~~~~~Q~~~dg~--~~~l~l~  384 (732)
T KOG4250|consen  315 VVHIFSMVQATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGLSHLEDSAQCIPDGL--DSPLYLV  384 (732)
T ss_pred             eeEEEeeccceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCccccCcccccCCCCC--CCceEEE
Confidence            3666666678889999999999999999999999999999999999876  556444444442  2334544

>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA

Probab=88.98  E-value=1.2  Score=36.80  Aligned_cols=45  Identities=22%  Similarity=0.317  Sum_probs=38.1

Q ss_pred             eeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEecc
Q 018493           55 TIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYK  100 (355)
Q Consensus        55 ~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIyk  100 (355)
                      .|+|+|.+++..+.|.|+++.++.+|..+|.+++|+. +..+|=|+
T Consensus         2 ~ikVKv~~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKyk   46 (86)
T cd06408           2 KIRVKVHAQDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMK   46 (86)
T ss_pred             cEEEEEEecCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEE
Confidence            4789999999999999999999999999999999995 44444444

NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is

>PF13019 Telomere_Sde2: Telomere stability and silencing

Probab=88.81  E-value=1.7  Score=39.71  Aligned_cols=64  Identities=19%  Similarity=0.149  Sum_probs=47.9

Q ss_pred             eEEEEEe-CC----EEEEEEEcCCCCHHHHHHHHhcccCCCccCcE-Eec-cCcc--cCCchhhhhcCCCCCC
Q 018493           56 IRVRVKY-GS----IYHEIHINSQATFGELKKLLTGPTGLHHEDQK-LIY-KDKE--RDSKAFLDVVGVKDKS  119 (355)
Q Consensus        56 I~V~VK~-gg----~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QK-LIy-kGK~--ldD~~tLs~~GIKdgS  119 (355)
                      |.|.|+. .+    .+..+.+++++||.+|+..|...++++...|- |.+ .|+.  ..++..++.+.-.+.+
T Consensus         1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~   73 (162)
T PF13019_consen    1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQD   73 (162)
T ss_pred             CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCC
Confidence            4566774 33    57888999999999999999999999998853 433 3444  4677778887766554

>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]

Probab=88.59  E-value=0.93  Score=44.32  Aligned_cols=56  Identities=14%  Similarity=0.122  Sum_probs=44.3

Q ss_pred             EEEcCCCCHHHHHHHHhcc-cCCCccCcEEe----ccCcccCCchhhhhcCCCCCCEEEEe
Q 018493           69 IHINSQATFGELKKLLTGP-TGLHHEDQKLI----YKDKERDSKAFLDVVGVKDKSKLVLV  124 (355)
Q Consensus        69 V~V~~~sTVgdLK~~I~e~-TGVppe~QKLI----ykGK~ldD~~tLs~~GIKdgSkImLv  124 (355)
                      .+++...|++|+++.+... ..+.+.++++-    -+||.+-|+.+|++||+.+|++|.+-
T Consensus        17 ~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~vK   77 (297)
T KOG1639|consen   17 KDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYVK   77 (297)
T ss_pred             ecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEEe
Confidence            4566778999999766654 66777555544    47999999999999999999998875

>PRK08364 sulfur carrier protein ThiS; Provisional

Probab=87.99  E-value=3.1  Score=32.25  Aligned_cols=62  Identities=21%  Similarity=0.205  Sum_probs=44.3

Q ss_pred             eeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493           55 TIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        55 ~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~  125 (355)
                      +|+|++-.......++++...|+.+|-+.+    +++++.-.+..+|....     .+.-|++|++|-++.
T Consensus         4 mm~v~vng~~~~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~-----~~~~l~~gD~Veii~   65 (70)
T PRK08364          4 MIRVKVIGRGIEKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVAL-----EDDPVKDGDYVEVIP   65 (70)
T ss_pred             EEEEEEeccccceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECC-----CCcCcCCCCEEEEEc
Confidence            455555333235567888889999998776    77777766778888764     356689999998874

>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein

Probab=87.21  E-value=2  Score=35.53  Aligned_cols=46  Identities=24%  Similarity=0.393  Sum_probs=38.5

Q ss_pred             eEEEEEeCCEEEEEEEcC-----CCCHHHHHHHHhcccCCCc-cCcEEeccC
Q 018493           56 IRVRVKYGSIYHEIHINS-----QATFGELKKLLTGPTGLHH-EDQKLIYKD  101 (355)
Q Consensus        56 I~V~VK~gg~~~~V~V~~-----~sTVgdLK~~I~e~TGVpp-e~QKLIykG  101 (355)
                      +.|+|+|++..+-+.++.     +.++.+|+++|.+...+++ ...-|-|+.
T Consensus         1 l~vKv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~D   52 (91)
T cd06398           1 LVVKVKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTD   52 (91)
T ss_pred             CEEEEEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEEC
Confidence            468999999999898885     6899999999999999998 455565654

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module

>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62

Probab=86.71  E-value=1.5  Score=35.83  Aligned_cols=36  Identities=14%  Similarity=0.395  Sum_probs=33.7

Q ss_pred             eEEEEEeCCEEEEEEEcC--CCCHHHHHHHHhcccCCC
Q 018493           56 IRVRVKYGSIYHEIHINS--QATFGELKKLLTGPTGLH   91 (355)
Q Consensus        56 I~V~VK~gg~~~~V~V~~--~sTVgdLK~~I~e~TGVp   91 (355)
                      |+|++.|++.+..+.+++  ..++.+|++.|....+++
T Consensus         1 V~vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~   38 (81)
T cd06396           1 VNLKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGLN   38 (81)
T ss_pred             CEEEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC
Confidence            689999999999999999  669999999999999999

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.

>PLN02799 Molybdopterin synthase sulfur carrier subunit

Probab=83.72  E-value=4.1  Score=31.98  Aligned_cols=65  Identities=14%  Similarity=0.234  Sum_probs=42.1

Q ss_pred             eEEEEEe--------CCEEEEEEEcCCCCHHHHHHHHhccc-CCCc--cCcEEeccCcccCCchhhhhcCCCCCCEEEEe
Q 018493           56 IRVRVKY--------GSIYHEIHINSQATFGELKKLLTGPT-GLHH--EDQKLIYKDKERDSKAFLDVVGVKDKSKLVLV  124 (355)
Q Consensus        56 I~V~VK~--------gg~~~~V~V~~~sTVgdLK~~I~e~T-GVpp--e~QKLIykGK~ldD~~tLs~~GIKdgSkImLv  124 (355)
                      ++|+|++        |.....++++...|+.+|.+.|.... ++..  ..-.+..+|+..+     .+.=|++|++|-++
T Consensus         2 m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~-----~~~~l~dgDeVai~   76 (82)
T PLN02799          2 VEIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTT-----ESAALKDGDELAII   76 (82)
T ss_pred             eEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcC-----CCcCcCCCCEEEEe
Confidence            4666665        33456778888899999999997654 1111  1123445666543     33468999999987


Q ss_pred             e
Q 018493          125 E  125 (355)
Q Consensus       125 ~  125 (355)
                      .
T Consensus        77 P   77 (82)
T PLN02799         77 P   77 (82)
T ss_pred             C
Confidence            4

>cd00754 MoaD Ubiquitin domain of MoaD-like proteins

Probab=83.30  E-value=3.4  Score=31.70  Aligned_cols=58  Identities=17%  Similarity=0.144  Sum_probs=41.9

Q ss_pred             CCEEEEEEEcCCCCHHHHHHHHhcccCC----CccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493           63 GSIYHEIHINSQATFGELKKLLTGPTGL----HHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        63 gg~~~~V~V~~~sTVgdLK~~I~e~TGV----ppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~  125 (355)
                      |.....++++...||.+|.+.|....+-    ......+..+|+...     .+.-|++|+.|.++.
T Consensus        14 g~~~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~p   75 (80)
T cd00754          14 GKDEEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAIIP   75 (80)
T ss_pred             CCceEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEeC
Confidence            3344567787789999999999987542    234455667787765     345699999999874

MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.

>TIGR02958 sec_mycoba_snm4 secretion protein snm4

Probab=82.81  E-value=4.5  Score=42.23  Aligned_cols=70  Identities=26%  Similarity=0.195  Sum_probs=57.5

Q ss_pred             eEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCC------ccCcEEe-ccCcccCCchhhhhcCCCCCCEEEEee
Q 018493           56 IRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLH------HEDQKLI-YKDKERDSKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        56 I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVp------pe~QKLI-ykGK~ldD~~tLs~~GIKdgSkImLv~  125 (355)
                      .+|+|..+....++-+|.+..|.||--.|-...|=.      +..-.|- -.|..+|.+.+|.+.||.||+.++|..
T Consensus         3 ~RVtV~~~~~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p   79 (452)
T TIGR02958         3 CRVTVLAGRRAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVP   79 (452)
T ss_pred             EEEEEeeCCeeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEee
Confidence            578899988889999999999999998888877642      2223333 456679999999999999999999985

Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.

>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]

Probab=82.52  E-value=1.9  Score=43.96  Aligned_cols=63  Identities=24%  Similarity=0.256  Sum_probs=55.6

Q ss_pred             CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCC--chhhhhcCCCCCCEEEEee
Q 018493           63 GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDS--KAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        63 gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD--~~tLs~~GIKdgSkImLv~  125 (355)
                      ..+..++.+..+..+.+|+..+...+|+..+..-|+|+++.+.+  ...|..||+++|+.|++=.
T Consensus        11 ~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~   75 (380)
T KOG0012|consen   11 FEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRC   75 (380)
T ss_pred             ceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEeccC
Confidence            44667888999999999999999999999999999999999554  5789999999999998854

>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A

Probab=81.99  E-value=3.9  Score=33.91  Aligned_cols=58  Identities=16%  Similarity=0.214  Sum_probs=40.8

Q ss_pred             EEEEEEcCCCCHHHHHHHHhcccCCCccCcEEecc----Ccc-c-CCchhhhhcCCCCCCEEEEe
Q 018493           66 YHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYK----DKE-R-DSKAFLDVVGVKDKSKLVLV  124 (355)
Q Consensus        66 ~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIyk----GK~-l-dD~~tLs~~GIKdgSkImLv  124 (355)
                      .+...+...+||+.+...+.+.+.| .+.-||--+    +-+ | +...+|.++||.+|..|+|=
T Consensus        15 ~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE   78 (88)
T PF14836_consen   15 VLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIE   78 (88)
T ss_dssp             EEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEE
T ss_pred             HhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEE
Confidence            4566789999999999999999999 666788532    222 4 45579999999999977663

>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown

Probab=80.05  E-value=4.1  Score=35.74  Aligned_cols=55  Identities=20%  Similarity=0.340  Sum_probs=41.3

Q ss_pred             EcC-CCCHHHHHHHHhc----ccCCCc------cCcEEecc----------------C-ccc---CCchhhhhcCCCCCC
Q 018493           71 INS-QATFGELKKLLTG----PTGLHH------EDQKLIYK----------------D-KER---DSKAFLDVVGVKDKS  119 (355)
Q Consensus        71 V~~-~sTVgdLK~~I~e----~TGVpp------e~QKLIyk----------------G-K~l---dD~~tLs~~GIKdgS  119 (355)
                      |+. +.||++|++.+.+    ..|++|      +..||+++                . -.+   +++.+|.++||.+..
T Consensus        22 vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nET  101 (122)
T PF10209_consen   22 VDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENET  101 (122)
T ss_pred             CCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCccc
Confidence            676 7899999877665    467765      67888854                1 235   677789999999999


Q ss_pred             EEEEee
Q 018493          120 KLVLVE  125 (355)
Q Consensus       120 kImLv~  125 (355)
                      .|-+..
T Consensus       102 EiSfF~  107 (122)
T PF10209_consen  102 EISFFN  107 (122)
T ss_pred             eeeeeC
Confidence            988764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	355
3a8y_C	142	BAG family molecular chaperone regulator 5; BAG do	5e-16
1m62_A	87	BAG-family molecular chaperone regulator-4; BAG do	3e-14
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	8e-14
1m7k_A	99	Silencer of death domains; three helix bundle, cha	3e-12
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	6e-12
1uk5_A	111	BAG-family molecular chaperone regulator-3; triple	1e-11
1ugo_A	99	BCL2-associated athanogene 5; triple helix bundle,	6e-10
1v5t_A	90	8430435I17RIK protein; hypothetical protein, ubiqu	2e-06
1wgg_A	96	Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-06
1wxv_A	92	BAG-family molecular chaperone regulator-1; struct	2e-05
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	9e-05
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	2e-04
2kj6_A	97	Tubulin folding cofactor B; methods development, N	6e-04

>3a8y_C BAG family molecular chaperone regulator 5; BAG domain, HSP70, ATPase domain, protein complex, triple helix, structural genomics, NPPSFA; 2.30A {Homo sapiens} Length = 142

 Score = 73.3 bits (179), Expect = 5e-16
 Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 10/111 (9%)

Query: 132 KRLLEMRKNAKLEK--ASKSISEISLEVDRLAGQVSALESIITKGGKVAEKDVLNLIELL 189
           K  LE RK    E+  + K++  +   +  + G+V + +      G   +K+ + L ELL
Sbjct: 16  KEALEKRKLFACEEHPSHKAVWNVLGNLSEIQGEVLSFD------GNRTDKNYIRLEELL 69

Query: 190 MNQLLKLDGIMADGD--VKLQRKMQVRRVQKYVETLDMLKIKNSMPSSNKH 238
             QLL LD +   G+   K  RK  VR  Q  +  LD+   +     + + 
Sbjct: 70  TKQLLALDAVDPQGEEKCKAARKQAVRLAQNILSYLDLKSDEWEYCKAARK 120

>1m62_A BAG-family molecular chaperone regulator-4; BAG domain, SODD, silencer of death domains, HSP70/HSC70 CO-chaperone; NMR {Homo sapiens} SCOP: a.7.7.1 Length = 87

 Score = 66.5 bits (162), Expect = 3e-14
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 8/84 (9%)

Query: 144 EKASKSISEISLEVDRLAGQVSALESIITKGGKVAEKDVLNLIELLMNQLLKLDGIMADG 203
             + K I  +  +V  L  +V          GK  +K    L E+L  +LL+LD +   G
Sbjct: 7   PPSIKKIIHVLEKVQYLEQEVEEFV------GKKTDKAYWLLEEMLTKELLELDSVETGG 60

Query: 204 --DVKLQRKMQVRRVQKYVETLDM 225
              V+  RK  V ++Q  +E L+ 
Sbjct: 61  QDSVRQARKEAVCKIQAILEKLEK 84

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 65.6 bits (160), Expect = 8e-14
 Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 1/75 (1%)

Query: 50  SAPPPTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAF 109
                 + +++ +    H++ +   +T  ELK+ +   TGL    QK++YK    + K  
Sbjct: 12  GVGKELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPEDKT- 70

Query: 110 LDVVGVKDKSKLVLV 124
           L  + V   +K+++V
Sbjct: 71  LREIKVTSGAKIMVV 85

>1m7k_A Silencer of death domains; three helix bundle, chaperone; NMR {Homo sapiens} SCOP: a.7.7.1 Length = 99

 Score = 61.2 bits (148), Expect = 3e-12
 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 8/80 (10%)

Query: 148 KSISEISLEVDRLAGQVSALESIITKGGKVAEKDVLNLIELLMNQLLKLDGIMADGD--V 205
           K I  +  +V  L  +V          GK  +K    L E+L  +LL+LD +   G   V
Sbjct: 24  KKIIHVLEKVQYLEQEVEEFV------GKKTDKAYWLLEEMLTKELLELDSVETGGQDSV 77

Query: 206 KLQRKMQVRRVQKYVETLDM 225
           +  RK  V ++Q  +E L+ 
Sbjct: 78  RQARKEAVCKIQAILEKLEK 97

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana} Length = 85

 Score = 60.0 bits (146), Expect = 6e-12
 Identities = 21/73 (28%), Positives = 34/73 (46%)

Query: 52  PPPTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLD 111
              TI++ VK+G     + ++   T  +LK  L   T +    QKLI+K K     + L 
Sbjct: 9   SHSTIKLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLK 68

Query: 112 VVGVKDKSKLVLV 124
              V   +KL+L+
Sbjct: 69  QSDVGSGAKLMLM 81

>1uk5_A BAG-family molecular chaperone regulator-3; triple helix bandle, CAIR-1, BIS, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.7.7.1 Length = 111

 Score = 60.1 bits (145), Expect = 1e-11
 Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 11/92 (11%)

Query: 146 ASKSISEISLEVDRLAGQVSALESIITKGGKVAEKDVLNLIELLMNQLLKLDGIMADG-- 203
               +  I  +V  L   V +        GK  +K  L + E L  +LL LD +  +G  
Sbjct: 28  GVLKVEAILEKVQGLEQAVDSF------EGKKTDKKYLMIEEYLTKELLALDSVDPEGRA 81

Query: 204 DVKLQRKMQVRRVQKYVETLDMLKIKNSMPSS 235
           DV+  R+  VR+VQ  +E L+    K S PSS
Sbjct: 82  DVRQARRDGVRKVQTILEKLEQ---KASGPSS 110

>1ugo_A BCL2-associated athanogene 5; triple helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics, chaperone; NMR {Mus musculus} SCOP: a.7.7.1 Length = 99

 Score = 55.0 bits (132), Expect = 6e-10
 Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 11/90 (12%)

Query: 148 KSISEISLEVDRLAGQVSALESIITKGGKVAEKDVLNLIELLMNQLLKLDGIMADG--DV 205
             + EI  EV  +  QV          G   +K+   L  +L  QL ++D +  +G  D+
Sbjct: 18  SRLQEIQREVKAIEPQVVGFS------GLSDDKNYKRLERILTKQLFEIDSVDTEGKGDI 71

Query: 206 KLQRKMQVRRVQKYVETLDMLKIKNSMPSS 235
           +  RK   +  ++ ++ L+      S PSS
Sbjct: 72  QQARKRAAQETERLLKELEQ---NASGPSS 98

>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A Length = 90

 Score = 44.5 bits (105), Expect = 2e-06
 Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 4/79 (5%)

Query: 50  SAPPPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIY---KDKERD 105
           S+    + + VK+ G  Y    ++   T  +LK+ L   TG+  E QKL+    K K  +
Sbjct: 2   SSGSSGLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAE 61

Query: 106 SKAFLDVVGVKDKSKLVLV 124
           +   L  + +K  +K++++
Sbjct: 62  NDVKLGALKLKPNTKIMMM 80

>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score = 44.5 bits (105), Expect = 3e-06
 Identities = 13/76 (17%), Positives = 29/76 (38%), Gaps = 2/76 (2%)

Query: 50  SAPPPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKA 108
           S+      V VK+    +  + +N+       K  L   TG+    QK++ K        
Sbjct: 2   SSGSSGYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDDD 61

Query: 109 FLDVVGVKDKSKLVLV 124
               + +K+   ++++
Sbjct: 62  -WGNIKMKNGMTVLMM 76

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 9e-06
 Identities = 43/248 (17%), Positives = 75/248 (30%), Gaps = 58/248 (23%)

Query: 91  HHED-----QKLIYKD----KERDSKAFLDVVGVKDKSKLVL----------VEDPISQE 131
           HH D      +  YKD     E       D   V+D  K +L           +D +S  
Sbjct: 5   HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64

Query: 132 KRLLEMRKNAKLEKASKSISEISLEVDRLAGQVSALESIITKGGKVAEKDVLNLIELLMN 191
            RL        L    + + +  +E + L      L S I    +         IE   +
Sbjct: 65  LRLFWT-----LLSKQEEMVQKFVE-EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR-D 117

Query: 192 QLLKLDGIMADGDVKLQRKMQVRRVQKYVETLDML-KIKNS-------MPSSNKHHSNGQ 243
           +L          D ++  K  V R+Q Y++    L +++ +       +  S K      
Sbjct: 118 RLY--------NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK-----T 164

Query: 244 RLAP--IQEQPQQQPPRHSNGHV--LASIQEQQARHSFENLSIQQQYHQQQQQQQQQQST 299
            +A         Q      +  +  L            E L  Q+  +Q       +   
Sbjct: 165 WVALDVCLSYKVQ---CKMDFKIFWLNLKNCNSPETVLEML--QKLLYQIDPNWTSRSD- 218

Query: 300 THSTSGPV 307
            HS++  +
Sbjct: 219 -HSSNIKL 225

>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 92

 Score = 42.0 bits (98), Expect = 2e-05
 Identities = 18/81 (22%), Positives = 43/81 (53%), Gaps = 6/81 (7%)

Query: 50  SAPPPTIRVRVKYGSIYHEIHI-----NSQATFGELKKLLTGPTGLHHEDQKLIYKDKE- 103
           S+    + V V + +  H++H+     +S+    +L +++    G+    QKLI+K K  
Sbjct: 2   SSGSSGLTVTVTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSL 61

Query: 104 RDSKAFLDVVGVKDKSKLVLV 124
           ++ +  L  +G++D  +++L+
Sbjct: 62  KEMETPLSALGIQDGCRVMLI 82

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S Length = 77

 Score = 39.5 bits (93), Expect = 9e-05
 Identities = 14/70 (20%), Positives = 34/70 (48%)

Query: 55  TIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVG 114
           ++ + +K G    E+++  ++T  + K+ +    G+   +Q+LIY  K       ++   
Sbjct: 4   SLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYH 63

Query: 115 VKDKSKLVLV 124
           ++D   + LV
Sbjct: 64  IQDGHSVHLV 73

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 101

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 14/70 (20%), Positives = 34/70 (48%)

Query: 55  TIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVG 114
           ++ + +K G    E+++  ++T  + K+ +    G+   +Q+LIY  K       ++   
Sbjct: 28  SLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYH 87

Query: 115 VKDKSKLVLV 124
           ++D   + LV
Sbjct: 88  IQDGHSVHLV 97

>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 97

 Score = 38.0 bits (88), Expect = 6e-04
 Identities = 10/71 (14%), Positives = 19/71 (26%), Gaps = 3/71 (4%)

Query: 44  PDSDRTSAPPPTIRVRVK---YGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYK 100
                 S    ++ + +      S   +   + Q +   +K+ L    G       L   
Sbjct: 3   HHHHHHSHGDDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELY 62

Query: 101 DKERDSKAFLD 111
           D      A L 
Sbjct: 63  DDSGSKVAVLS 73

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	355
1m62_A	87	BAG-family molecular chaperone regulator-4; BAG do	99.76
1wgg_A	96	Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti	99.74
1uk5_A	111	BAG-family molecular chaperone regulator-3; triple	99.74
1m7k_A	99	Silencer of death domains; three helix bundle, cha	99.74
1v5t_A	90	8430435I17RIK protein; hypothetical protein, ubiqu	99.73
3a8y_C	142	BAG family molecular chaperone regulator 5; BAG do	99.71
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	99.71
1ugo_A	99	BCL2-associated athanogene 5; triple helix bundle,	99.7
1wxv_A	92	BAG-family molecular chaperone regulator-1; struct	99.7
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	99.69
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	99.68
1i6z_A	135	BAG-family molecular chaperone regulator-1; triple	99.68
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	99.66
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	99.65
3v6c_B	91	Ubiquitin; structural genomics, structural genomic	99.64
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	99.64
3plu_A	93	Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-	99.63
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	99.63
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	99.63
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	99.62
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	99.62
2lxa_A	87	Ubiquitin-like protein MDY2; ubiquitin-like domain	99.62
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	99.62
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	99.62
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	99.62
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	99.61
4a20_A	98	Ubiquitin-like protein MDY2; protein binding, GET-	99.61
1wju_A	100	NEDD8 ultimate buster-1; ubiquitin-like domain, st	99.6
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	99.6
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	99.6
1uh6_A	100	Ubiquitin-like 5; beta-grAsp fold, structural geno	99.6
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	99.59
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	99.59
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	99.59
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	99.59
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	99.59
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	99.59
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	99.59
4hcn_B	98	Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidas	99.59
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	99.59
2dzm_A	100	FAS-associated factor 1; ubiquitin-like domain, HF	99.59
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	99.59
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	99.58
1x1m_A	107	Ubiquitin-like protein SB132; structural genomics,	99.58
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	99.58
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	99.58
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	99.58
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	99.58
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	99.58
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	99.57
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	99.56
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	99.56
1t7s_A	137	BAG-1 cochaperone; structural genomics, PSI, prote	99.53
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	99.53
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	99.53
4b6w_A	86	Tubulin-specific chaperone; CAP-Gly, ubiquitin-lik	99.52
2uyz_B	79	Small ubiquitin-related modifier 1; sumoylation, c	99.51
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	99.51
1wia_A	95	Hypothetical ubiquitin-like protein (riken cDNA 20	99.51
1we6_A	111	Splicing factor, putative; structural genomics, ub	99.51
1hx1_B	114	BAG-1, BAG-family molecular chaperone regulator-1;	99.5
1v6e_A	95	Cytoskeleton-associated protein 1; tubulin-specifi	99.5
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	99.25
2daf_A	118	FLJ35834 protein; hypothetical protein FLJ35834, u	99.5
3vdz_A	111	Ubiquitin-40S ribosomal protein S27A; gadolinium,	99.5
2fnj_B	118	Transcription elongation factor B polypeptide 2; b	99.5
4ajy_B	118	Transcription elongation factor B polypeptide 2; E	99.49
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	99.49
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	99.48
2kjr_A	95	CG11242; UBL, ubiquitin, ubiquitin-like, structura	99.48
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	99.47
1v2y_A	105	3300001G02RIK protein; hypothetical protein, ubiqu	99.47
2kdb_A	99	Homocysteine-responsive endoplasmic reticulum- res	99.46
2kj6_A	97	Tubulin folding cofactor B; methods development, N	99.45
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	99.45
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	99.44
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	99.42
1wgh_A	116	Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo	99.42
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	99.41
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	99.41
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	99.41
2gow_A	125	HCG-1 protein, ubiquitin-like protein 3; BC059385,	99.41
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	99.4
1t0y_A	122	Tubulin folding cofactor B; ubiquitin-like, cytosk	99.4
4dbg_A	105	Ranbp-type and C3HC4-type zinc finger-containing;	99.39
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	99.37
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	99.36
1wf9_A	107	NPL4 family protein; beta-grAsp fold like domain,	99.31
3u5c_f	152	40S ribosomal protein S31; translation, ribosome,	99.31
2dzj_A	88	Synaptic glycoprotein SC2; ubiquitin-like fold, st	99.31
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	99.3
1se9_A	126	Ubiquitin family; ubiquitin-like, cell-free, wheat	99.3
2kzr_A	86	Ubiquitin thioesterase OTU1; structural genomics,	99.29
3ai5_A	307	Yeast enhanced green fluorescent protein, ubiquit;	99.28
1wjn_A	97	Tubulin-folding protein TBCE; ubiquitin-like domai	99.14
2io1_B	94	Small ubiquitin-related modifier 3 precursor; SUMO	98.98
3a4r_A	79	Nfatc2-interacting protein; ubiquitin fold, coiled	98.97
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	98.93
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	98.89
1wm3_A	72	Ubiquitin-like protein SMT3B; ubiquitin fold, half	98.89
2d07_B	93	Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Ho	98.8
1wz0_A	104	Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li	98.78
2eke_C	106	Ubiquitin-like protein SMT3; UBC9, SUMO binding mo	98.77
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	98.73
2pjh_A	80	Protein NPL4, nuclear protein localization protein	98.4
3kyd_D	115	Small ubiquitin-related modifier 1; SUMO, thioeste	98.33
3pge_A	200	SUMO-modified proliferating cell nuclear antigen;	98.26
3tix_A	207	Ubiquitin-like protein SMT3, RNA-induced transcri	98.19
4efo_A	94	Serine/threonine-protein kinase TBK1; ubiquitin li	98.16
2d9d_A	89	BAG family molecular chaperone regulator 5; triple	97.9
3v7o_A	227	Minor nucleoprotein VP30; ssgcid, seattle structur	97.72
2jxx_A	97	Nfatc2-interacting protein; nuclear factor of acti	97.71
2bps_A	81	YUKD protein; ubiquitin-like protein, ubiquitin; 2	97.57
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	97.46
2l76_A	95	Nfatc2-interacting protein; ubiquitin-like domain,	97.44
3goe_A	82	DNA repair protein RAD60; SUMO-like domain, sumoyl	97.4
3ix6_A	360	TS, tsase, thymidylate synthase; niaid, ssgcid, se	97.37
4da1_A	389	Protein phosphatase 1K, mitochondrial; metal-ION-a	97.17
2al3_A	90	TUG long isoform; TUG UBL1 insulin, endocytosis/ex	97.11
2kc2_A	128	Talin-1, F1; FERM, adhesion, cell membrane, cell p	96.78
3qx1_A	84	FAS-associated factor 1; UBX, protein binding, P97	96.75
1wj4_A	124	KIAA0794 protein; UBX domain, beta-grAsp fold, str	96.59
2dzk_A	109	UBX domain-containing protein 2; ubiquitin-like fo	95.31
2daj_A	91	KIAA0977 protein, COBL-like 1; ubiquitin-like doma	94.83
1oey_A	83	P67-PHOX, neutrophil cytosol factor 2; immune syst	93.98
4a3p_A	217	Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {H	93.78
1vd2_A	89	Protein kinase C, IOTA type; PB1 domain, OPCA moti	93.22
3ivf_A	371	Talin-1; FERM domain, cell membrane, cell projecti	92.87
2cr5_A	109	Reproduction 8; UBX domain, D0H8S2298E protein, st	92.75
3jyu_A	231	Ubiquitin carboxyl-terminal hydrolase; domain in u	92.51
1ip9_A	85	BEM1 protein; ubiquitin alpha/beta roll, signaling	91.59
1ryj_A	70	Unknown; beta/alpha protein, structural genomics,	91.3
1s3s_G	127	P47 protein; AAA ATPase, protein-protein complex,	91.12
2l32_A	74	Small archaeal modifier protein 2; protein BIN; NM	90.31
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	87.39
1vjk_A	98	Molybdopterin converting factor, subunit 1; struct	85.83
3po0_A	89	Small archaeal modifier protein 1; ubiquitin-like	80.63

>1m62_A BAG-family molecular chaperone regulator-4; BAG domain, SODD, silencer of death domains, HSP70/HSC70 CO-chaperone; NMR {Homo sapiens} SCOP: a.7.7.1

Probab=99.76  E-value=1.3e-18  Score=140.48  Aligned_cols=74  Identities=31%  Similarity=0.432  Sum_probs=68.8

Q ss_pred             hhhhHHHHHHHHHHhhhhHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHhccCCCCChh--hHHHHHHHHHHHHHHHHHH
Q 018493          146 ASKSISEISLEVDRLAGQVSALESIITKGGKVAEKDVLNLIELLMNQLLKLDGIMADGD--VKLQRKMQVRRVQKYVETL  223 (355)
Q Consensus       146 a~~aIs~V~~eVDkLa~ev~~LE~~I~~g~Kv~eke~~~LsE~LMq~LLKLD~IeaeGd--aR~qRK~~VkrVQ~~Le~L  223 (355)
                      ++.+|..|..+|++|+.+|..|+      +++.+++|.+|+|+||++|||||+|+++|+  +|++||.+|++||++|+.|
T Consensus         9 a~~~I~~I~~ev~~L~~~V~~f~------g~~~dkey~~L~E~L~k~LLkLD~Ie~eG~~~~R~~RK~~Vk~iQ~~l~~L   82 (87)
T 1m62_A            9 SIKKIIHVLEKVQYLEQEVEEFV------GKKTDKAYWLLEEMLTKELLELDSVETGGQDSVRQARKEAVCKIQAILEKL   82 (87)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHCC------CCTTSHHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh------CCcchHHHHHHHHHHHHHHHHHCCcCcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            56789999999999999998885      457899999999999999999999999995  9999999999999999999


Q ss_pred             HH
Q 018493          224 DM  225 (355)
Q Consensus       224 D~  225 (355)
                      |.
T Consensus        83 D~   84 (87)
T 1m62_A           83 EK   84 (87)
T ss_dssp             HH
T ss_pred             Hh
Confidence            97

>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.74  E-value=3e-18  Score=139.01  Aligned_cols=76  Identities=17%  Similarity=0.192  Sum_probs=72.0

Q ss_pred             CCCeeEEEEEeCCEEE-EEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeecCC
Q 018493           52 PPPTIRVRVKYGSIYH-EIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVEDPI  128 (355)
Q Consensus        52 ~~~~I~V~VK~gg~~~-~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~p~  128 (355)
                      ...+|+|+|+|++..| .|+|++++||++||++|++.+|||+++|||+|+||.++|+ +|++|||++|++||||+.+.
T Consensus         4 ~~~~m~i~Vk~~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~~   80 (96)
T 1wgg_A            4 GSSGYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSAD   80 (96)
T ss_dssp             CCCEEEEEEEETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCCC
T ss_pred             CCcEEEEEEEECCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecch
Confidence            4568999999999999 6999999999999999999999999999999999999998 99999999999999998765

>1uk5_A BAG-family molecular chaperone regulator-3; triple helix bandle, CAIR-1, BIS, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.7.7.1

Probab=99.74  E-value=3.7e-18  Score=143.26  Aligned_cols=78  Identities=29%  Similarity=0.414  Sum_probs=69.2

Q ss_pred             hhhhHHHHHHHHHHhhhhHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHhccCCCCChh--hHHHHHHHHHHHHHHHHHH
Q 018493          146 ASKSISEISLEVDRLAGQVSALESIITKGGKVAEKDVLNLIELLMNQLLKLDGIMADGD--VKLQRKMQVRRVQKYVETL  223 (355)
Q Consensus       146 a~~aIs~V~~eVDkLa~ev~~LE~~I~~g~Kv~eke~~~LsE~LMq~LLKLD~IeaeGd--aR~qRK~~VkrVQ~~Le~L  223 (355)
                      ++.+|..|..+|++|..+|..|     .+ +..|++|.+|+|+||++|||||+|+++|+  +|++||.+||+||++|+.|
T Consensus        28 ~~~~I~~I~~eV~~L~~qV~~f-----~g-~k~dkey~~L~E~L~k~LLkLD~IeteG~~~vR~aRK~aVk~iQ~~l~~L  101 (111)
T 1uk5_A           28 GVLKVEAILEKVQGLEQAVDSF-----EG-KKTDKKYLMIEEYLTKELLALDSVDPEGRADVRQARRDGVRKVQTILEKL  101 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTC-----CS-CSSSHHHHHHHHHHHHHHHHHHSCCCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-----cC-CcchHHHHHHHHHHHHHHHHHCCcCcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            4678999999999998888877     34 44799999999999999999999999995  9999999999999999999


Q ss_pred             HHhhhh
Q 018493          224 DMLKIK  229 (355)
Q Consensus       224 D~lk~~  229 (355)
                      |....-
T Consensus       102 D~k~~~  107 (111)
T 1uk5_A          102 EQKASG  107 (111)
T ss_dssp             HHHHHC
T ss_pred             HhcccC
Confidence            985543

>1m7k_A Silencer of death domains; three helix bundle, chaperone; NMR {Homo sapiens} SCOP: a.7.7.1

Probab=99.74  E-value=4e-18  Score=140.59  Aligned_cols=75  Identities=31%  Similarity=0.426  Sum_probs=69.1

Q ss_pred             hhhhhHHHHHHHHHHhhhhHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHhccCCCCChh--hHHHHHHHHHHHHHHHHH
Q 018493          145 KASKSISEISLEVDRLAGQVSALESIITKGGKVAEKDVLNLIELLMNQLLKLDGIMADGD--VKLQRKMQVRRVQKYVET  222 (355)
Q Consensus       145 ka~~aIs~V~~eVDkLa~ev~~LE~~I~~g~Kv~eke~~~LsE~LMq~LLKLD~IeaeGd--aR~qRK~~VkrVQ~~Le~  222 (355)
                      .++.+|..|..+|++|+.+|..|+     |.| .+++|.+|+|+||++|||||+|+++|+  +|++||.+|++||++|+.
T Consensus        21 ~~~~kI~~I~~ev~~L~~~V~~f~-----G~k-~dkey~~L~E~L~k~LLkLD~IeteG~~~vR~~RK~~Vk~iQ~~l~~   94 (99)
T 1m7k_A           21 PSIKKIIHVLEKVQYLEQEVEEFV-----GKK-TDKAYWLLEEMLTKELLELDSVETGGQDSVRQARKEAVCKIQAILEK   94 (99)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHCC-----SCT-TSHHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHh-----CCc-hHHHHHHHHHHHHHHHHHHCCcCcCCcHHHHHHHHHHHHHHHHHHHH
Confidence            467889999999999999998886     444 799999999999999999999999995  999999999999999999


Q ss_pred             HHH
Q 018493          223 LDM  225 (355)
Q Consensus       223 LD~  225 (355)
                      ||.
T Consensus        95 LD~   97 (99)
T 1m7k_A           95 LEK   97 (99)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            997

>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A

Probab=99.73  E-value=4.6e-18  Score=135.79  Aligned_cols=77  Identities=23%  Similarity=0.346  Sum_probs=73.0

Q ss_pred             CCCeeEEEEEeCCEEEEE-EEcCCCCHHHHHHHHhcccCCCccCcEEe---ccCcccCCchhhhhcCCCCCCEEEEeecC
Q 018493           52 PPPTIRVRVKYGSIYHEI-HINSQATFGELKKLLTGPTGLHHEDQKLI---YKDKERDSKAFLDVVGVKDKSKLVLVEDP  127 (355)
Q Consensus        52 ~~~~I~V~VK~gg~~~~V-~V~~~sTVgdLK~~I~e~TGVppe~QKLI---ykGK~ldD~~tLs~~GIKdgSkImLv~~p  127 (355)
                      ...+|+|+|+|++..|.| +|++++||++||++|++.+|||+++|||+   |+|+.++|+.+|++|||++|++||||+.+
T Consensus         4 ~~~~m~i~Vk~~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~   83 (90)
T 1v5t_A            4 GSSGLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTR   83 (90)
T ss_dssp             CCCSCCEEEEETTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCC
T ss_pred             CCceEEEEEEECCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecC
Confidence            456799999999999999 99999999999999999999999999999   99999999999999999999999999976


Q ss_pred             C
Q 018493          128 I  128 (355)
Q Consensus       128 ~  128 (355)
                      .
T Consensus        84 ~   84 (90)
T 1v5t_A           84 E   84 (90)
T ss_dssp             S
T ss_pred             c
Confidence            5

>3a8y_C BAG family molecular chaperone regulator 5; BAG domain, HSP70, ATPase domain, protein complex, triple helix, structural genomics, NPPSFA; 2.30A {Homo sapiens}

Probab=99.71  E-value=1.6e-17  Score=144.37  Aligned_cols=82  Identities=28%  Similarity=0.401  Sum_probs=73.6

Q ss_pred             hhhhHHHHHHHHHHhhhhHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHhccCCCCChh--hHHHHHHHHHHHHHHHHHH
Q 018493          146 ASKSISEISLEVDRLAGQVSALESIITKGGKVAEKDVLNLIELLMNQLLKLDGIMADGD--VKLQRKMQVRRVQKYVETL  223 (355)
Q Consensus       146 a~~aIs~V~~eVDkLa~ev~~LE~~I~~g~Kv~eke~~~LsE~LMq~LLKLD~IeaeGd--aR~qRK~~VkrVQ~~Le~L  223 (355)
                      ++.+|..|..+||+|+.+|..|      .+++.+++|.+|+|+||++|||||+|+++|+  +|.+||.+||+||++|+.|
T Consensus        32 ~~~aI~~V~~eVd~L~~eV~~F------~G~~~dkey~~L~E~L~k~LLKLD~IdteGd~~vR~aRK~aVk~VQ~~Le~L  105 (142)
T 3a8y_C           32 SHKAVWNVLGNLSEIQGEVLSF------DGNRTDKNYIRLEELLTKQLLALDAVDPQGEEKCKAARKQAVRLAQNILSYL  105 (142)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTC------CSCTTSHHHHHHHHHHHHHHHHHHTCCCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHh------cCCchHHHHHHHHHHHHHHHHHHcCcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            5678999999999999999877      4457899999999999999999999999995  9999999999999999999


Q ss_pred             HHhhhhcCCC
Q 018493          224 DMLKIKNSMP  233 (355)
Q Consensus       224 D~lk~~n~~~  233 (355)
                      |..+..+.+.
T Consensus       106 D~k~~e~~~~  115 (142)
T 3a8y_C          106 DLKSDEWEYC  115 (142)
T ss_dssp             HHHHCBCCC-
T ss_pred             HHhhHHHHHH
Confidence            9988766543

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.71  E-value=1.9e-17  Score=133.82  Aligned_cols=77  Identities=23%  Similarity=0.356  Sum_probs=71.1

Q ss_pred             CCCCeeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeecCC
Q 018493           51 APPPTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVEDPI  128 (355)
Q Consensus        51 ~~~~~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~p~  128 (355)
                      ....+|+|+|+|++..|.|+|++++||.+||++|++.+|||+++|||+|+|+.++|. +|++|||++|++|||++.+.
T Consensus        13 ~~~~~~~i~Vk~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ldd~-tL~~~~i~~g~~i~lv~~~~   89 (95)
T 1v86_A           13 VGKELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPEDK-TLREIKVTSGAKIMVVGSTI   89 (95)
T ss_dssp             CCCCCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCSSS-BHHHHCCCTTEEEEECCSSC
T ss_pred             CCCceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCCcC-cHHHCCCCCCCEEEEEeccc
Confidence            345679999999999999999999999999999999999999999999999999655 99999999999999998654

>1ugo_A BCL2-associated athanogene 5; triple helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics, chaperone; NMR {Mus musculus} SCOP: a.7.7.1

Probab=99.70  E-value=1.8e-17  Score=136.60  Aligned_cols=75  Identities=23%  Similarity=0.395  Sum_probs=67.2

Q ss_pred             hhhhHHHHHHHHHHhhhhHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHhccCCCCChh--hHHHHHHHHHHHHHHHHHH
Q 018493          146 ASKSISEISLEVDRLAGQVSALESIITKGGKVAEKDVLNLIELLMNQLLKLDGIMADGD--VKLQRKMQVRRVQKYVETL  223 (355)
Q Consensus       146 a~~aIs~V~~eVDkLa~ev~~LE~~I~~g~Kv~eke~~~LsE~LMq~LLKLD~IeaeGd--aR~qRK~~VkrVQ~~Le~L  223 (355)
                      +..+|..|..+|++|+++|..|     .+.| .+++|.+|+|+||++|||||+|+++|+  +|++||.+|++||++|+.|
T Consensus        16 pi~kI~~I~~ev~~L~~~V~~f-----~g~k-~dkey~~L~E~L~k~LLkLD~IeteG~~~iR~~RK~~Vk~iQ~~l~~L   89 (99)
T 1ugo_A           16 SISRLQEIQREVKAIEPQVVGF-----SGLS-DDKNYKRLERILTKQLFEIDSVDTEGKGDIQQARKRAAQETERLLKEL   89 (99)
T ss_dssp             THHHHHHHHHHHHHSHHHHHTC-----CCCT-TSSHHHHHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHh-----cCCc-hhHHHHHHHHHHHHHHHHHcCcCcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            4567899999999999988887     3444 799999999999999999999999994  5999999999999999999


Q ss_pred             HHh
Q 018493          224 DML  226 (355)
Q Consensus       224 D~l  226 (355)
                      |..
T Consensus        90 D~k   92 (99)
T 1ugo_A           90 EQN   92 (99)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            984

>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.70  E-value=3.3e-17  Score=130.45  Aligned_cols=78  Identities=24%  Similarity=0.405  Sum_probs=71.5

Q ss_pred             CCCeeEEEEEeCCEEEEEEEcCC-----CCHHHHHHHHhcccCCCccCcEEeccCcccCC-chhhhhcCCCCCCEEEEee
Q 018493           52 PPPTIRVRVKYGSIYHEIHINSQ-----ATFGELKKLLTGPTGLHHEDQKLIYKDKERDS-KAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        52 ~~~~I~V~VK~gg~~~~V~V~~~-----sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD-~~tLs~~GIKdgSkImLv~  125 (355)
                      ...+|+|+|+|++..|.|+|+++     +||++||++|++.+|||+++|||+|+|+.|+| +.+|++|||++|++|+|++
T Consensus         4 ~~~~~~v~Vk~~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~   83 (92)
T 1wxv_A            4 GSSGLTVTVTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIG   83 (92)
T ss_dssp             CCSSEEEEEECSSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEES
T ss_pred             CCCeEEEEEEECCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEe
Confidence            34689999999999999999996     99999999999999999999999999999877 6689999999999999998


Q ss_pred             cCCc
Q 018493          126 DPIS  129 (355)
Q Consensus       126 ~p~s  129 (355)
                      .+.+
T Consensus        84 ~~~~   87 (92)
T 1wxv_A           84 KKNS   87 (92)
T ss_dssp             CCSC
T ss_pred             cCCC
Confidence            6553

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.69  E-value=4.2e-17  Score=138.54  Aligned_cols=97  Identities=18%  Similarity=0.179  Sum_probs=85.3

Q ss_pred             CCccccccceeecCCceEEEeecCCCCCCCCCCCeeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEecc
Q 018493           21 GSAEAAAHEWELRPGGMLVQKRNPDSDRTSAPPPTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYK  100 (355)
Q Consensus        21 ~~~~~~~~~we~rpggmlvqkR~~~~~~~~~~~~~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIyk  100 (355)
                      |+....-..|+++|+|+.+.+-         ...+|+|+|++.+..+.|+|++++||.+||++|++.+|||+++|||+|+
T Consensus         7 ~~~~~~~~~~~~~~~~s~~~~~---------~~~~m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~   77 (125)
T 1j8c_A            7 SSGPPRPSRGPAAAQGSAAAPA---------EPKIIKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFA   77 (125)
T ss_dssp             CCCCCSSCCCSCCCCCSSSCCC---------CCCCEEEEEECSSCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEET
T ss_pred             CCCCCChhhCCcCCCCCCcccC---------CCCcEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEEC
Confidence            3334445689999999886652         2357999999877889999999999999999999999999999999999


Q ss_pred             CcccCCchhhhhcCCCCCCEEEEeec
Q 018493          101 DKERDSKAFLDVVGVKDKSKLVLVED  126 (355)
Q Consensus       101 GK~ldD~~tLs~~GIKdgSkImLv~~  126 (355)
                      |+.|+|+.+|.+|||++|++|+|+..
T Consensus        78 Gk~L~D~~tL~dygI~~gstI~lv~~  103 (125)
T 1j8c_A           78 GKILKDQDTLIQHGIHDGLTVHLVIK  103 (125)
T ss_dssp             TEEESTTSCGGGTTCSSSEEEEEEEC
T ss_pred             CEEcCCCCCHHHcCCCCCCEEEEEec
Confidence            99999999999999999999999974

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S

Probab=99.68  E-value=1e-16  Score=122.04  Aligned_cols=72  Identities=19%  Similarity=0.364  Sum_probs=68.9

Q ss_pred             eEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeecC
Q 018493           56 IRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVEDP  127 (355)
Q Consensus        56 I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~p  127 (355)
                      |.|+|++++..+.++|++++||++||++|++.+|+|+++|+|+|+|+.++|+.+|++|||++|++|+|+..+
T Consensus         5 m~i~vk~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~   76 (77)
T 2bwf_A            5 LNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ   76 (77)
T ss_dssp             EEEEEEETTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred             EEEEEEECCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEcC
Confidence            888999988999999999999999999999999999999999999999999999999999999999999764

>1i6z_A BAG-family molecular chaperone regulator-1; triple helix bundle; NMR {Mus musculus} SCOP: a.7.7.1

Probab=99.68  E-value=6.8e-17  Score=139.41  Aligned_cols=109  Identities=22%  Similarity=0.338  Sum_probs=92.6

Q ss_pred             CCCEEEEeecCCchHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhHHHHHH-------HHHhCCCcchhhHhhHHHHH
Q 018493          117 DKSKLVLVEDPISQEKRLLEMRKNAKLEKASKSISEISLEVDRLAGQVSALES-------IITKGGKVAEKDVLNLIELL  189 (355)
Q Consensus       117 dgSkImLv~~p~s~E~~~~e~kk~k~ieka~~aIs~V~~eVDkLa~ev~~LE~-------~I~~g~Kv~eke~~~LsE~L  189 (355)
                      +|++|||+|.+.++|++ .+.++.++++++   +..+...++.+..++..|++       .+.+..++ +|++..++|.+
T Consensus         1 ~G~KvMviGkK~~peee-~~lKkL~dveks---v~~~~k~l~~l~~el~~iekGFL~k~l~~ea~~kl-~Krik~~~E~~   75 (135)
T 1i6z_A            1 GSPEFMLIGEKSNPEEE-VELKKLKDLEVS---AEKIANHLQELNKELSGIQQGFLAKELQAEALCKL-DRKVKATIEQF   75 (135)
T ss_dssp             CCCCCSSSCCCCCHHHH-HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred             CCceEEEeCCCCChHHH-HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcchhhhhhhhHHHHH-HHHHHHHHHHH
Confidence            69999999999999988 677777777775   55666788888888888876       33455677 99999999999


Q ss_pred             HHHHHhccCCC---CChhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 018493          190 MNQLLKLDGIM---ADGDVKLQRKMQVRRVQKYVETLDMLKIKN  230 (355)
Q Consensus       190 Mq~LLKLD~Ie---aeGdaR~qRK~~VkrVQ~~Le~LD~lk~~n  230 (355)
                      |+.|++||++.   .+.++|.+||.+|++||.+|+++|.+.++-
T Consensus        76 Mk~LE~LDs~~ip~~~~~~R~kRK~lV~~iQ~~L~~~D~l~~~~  119 (135)
T 1i6z_A           76 MKILEEIDTMVLPEQFKDSRLKRKNLVKKVQVFLAECDTVEQYI  119 (135)
T ss_dssp             HHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999994   344899999999999999999999999763

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.66  E-value=2.4e-16  Score=124.75  Aligned_cols=75  Identities=28%  Similarity=0.356  Sum_probs=71.4

Q ss_pred             CCeeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeecC
Q 018493           53 PPTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVEDP  127 (355)
Q Consensus        53 ~~~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~p  127 (355)
                      -.++.+.+++++..+.++|++++||++||++|++.+|+|+++|||+|+|+.++|+.+|++|||++|++|+|+..+
T Consensus        10 ~~~~~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s~   84 (85)
T 2kd0_A           10 HSTIKLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMASQ   84 (85)
T ss_dssp             CCCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECCC
T ss_pred             CCcEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEeC
Confidence            467889999999999999999999999999999999999999999999999999999999999999999999865

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}

Probab=99.65  E-value=3e-16  Score=120.77  Aligned_cols=72  Identities=17%  Similarity=0.214  Sum_probs=68.3

Q ss_pred             CeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493           54 PTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        54 ~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~  125 (355)
                      +.+.|.|++ +|..+.++|++++||++||++|++.+|+|+++|+|+|+|+.++|+.+|++|||++|++|+|+.
T Consensus         3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~   75 (79)
T 3phx_B            3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNL   75 (79)
T ss_dssp             CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred             CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEE
Confidence            468899997 678899999999999999999999999999999999999999999999999999999999985

>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B

Probab=99.64  E-value=4.6e-16  Score=123.57  Aligned_cols=76  Identities=18%  Similarity=0.299  Sum_probs=70.5

Q ss_pred             CCCCCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493           50 SAPPPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        50 ~~~~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~  125 (355)
                      ..+...|.|+|+. +|..+.|+|++++||++||++|++.+|+|+++|||+|+|+.++|+.+|.+|||++|++|+|+.
T Consensus        12 ~~~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~   88 (91)
T 3v6c_B           12 LVPRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL   88 (91)
T ss_dssp             CCCCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEEC
T ss_pred             CCCCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEE
Confidence            3445679999995 678899999999999999999999999999999999999999999999999999999999985

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.64  E-value=5.2e-16  Score=119.12  Aligned_cols=75  Identities=20%  Similarity=0.245  Sum_probs=69.3

Q ss_pred             CCCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493           52 PPPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED  126 (355)
Q Consensus        52 ~~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~  126 (355)
                      ....|.|+|+. ++..+.++|++++||++||++|++.+|+|+++|+|+|+|+.++|+.+|++|||++|++|+|+..
T Consensus         4 ~~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~   79 (81)
T 2dzi_A            4 GSSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVK   79 (81)
T ss_dssp             SSSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECC
T ss_pred             CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEe
Confidence            34678899985 5688999999999999999999999999999999999999999999999999999999999864

>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A

Probab=99.63  E-value=5.4e-16  Score=126.69  Aligned_cols=73  Identities=19%  Similarity=0.152  Sum_probs=68.6

Q ss_pred             CCCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEe
Q 018493           52 PPPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLV  124 (355)
Q Consensus        52 ~~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv  124 (355)
                      .+++|.|.|+. .|+++.|.+.+++||++||++|+++.|+|+++|+|+|.|++++|..+|++|||++|++|+|.
T Consensus        18 ~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~   91 (93)
T 3plu_A           18 GSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY   91 (93)
T ss_dssp             --CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred             CCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence            56899999996 67899999999999999999999999999999999999999999999999999999999985

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I

Probab=99.63  E-value=7.4e-16  Score=120.22  Aligned_cols=75  Identities=21%  Similarity=0.253  Sum_probs=70.1

Q ss_pred             CCCCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493           51 APPPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        51 ~~~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~  125 (355)
                      .....|.|+|++ .+..+.|+|++++||.+||++|++.+|+|+++|+|+|+|+.++|+.+|.+|||++|++|+|+.
T Consensus         8 ~~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~   83 (88)
T 3dbh_I            8 GSGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVL   83 (88)
T ss_dssp             SCCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECC
T ss_pred             CCCCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEE
Confidence            345679999996 678899999999999999999999999999999999999999999999999999999999975

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}

Probab=99.63  E-value=6.8e-16  Score=121.29  Aligned_cols=72  Identities=25%  Similarity=0.345  Sum_probs=68.1

Q ss_pred             CCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493           53 PPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        53 ~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~  125 (355)
                      ...|.|+|++ ++..+.++|++++||++||++|++.+|+|+++|||+|+|+.++|+.+|++||| +|++|+|+.
T Consensus        15 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~~i~lv~   87 (88)
T 4eew_A           15 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVE   87 (88)
T ss_dssp             CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEE
T ss_pred             CCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-CCcEEEEEE
Confidence            4679999998 57889999999999999999999999999999999999999999999999999 899999974

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.62  E-value=1.2e-15  Score=119.20  Aligned_cols=76  Identities=22%  Similarity=0.272  Sum_probs=70.8

Q ss_pred             CCCCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493           51 APPPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED  126 (355)
Q Consensus        51 ~~~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~  126 (355)
                      .+.++|.|+|++ .+..+.++|++++||.+||++|++.+|+|+++|+|+|+|+.++|+.+|++|||++|++|+|+..
T Consensus         3 ~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~   79 (87)
T 1wh3_A            3 SGSSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKK   79 (87)
T ss_dssp             CCSSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEEC
T ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEe
Confidence            355789999998 5788999999999999999999999999999999999999999999999999999999999864

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.62  E-value=6.8e-16  Score=122.19  Aligned_cols=74  Identities=12%  Similarity=0.126  Sum_probs=68.8

Q ss_pred             CeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcc-cCCchhhhhcCCCCCCEEEEeecC
Q 018493           54 PTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKE-RDSKAFLDVVGVKDKSKLVLVEDP  127 (355)
Q Consensus        54 ~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~-ldD~~tLs~~GIKdgSkImLv~~p  127 (355)
                      ..++|.|+. .|+.+.++|++++||++||++|++.+|+|+++|||+|+|+. ++|+.+|++|||++|++|+|+..|
T Consensus         9 ~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~p   84 (84)
T 2kk8_A            9 SHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVSS   84 (84)
T ss_dssp             CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEECC
T ss_pred             CceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEcC
Confidence            457888885 67889999999999999999999999999999999999999 999999999999999999998754

>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}

Probab=99.62  E-value=3.6e-16  Score=125.48  Aligned_cols=74  Identities=20%  Similarity=0.258  Sum_probs=66.4

Q ss_pred             eeEEEEEe-CCEEEEEEE--cCCCCHHHHHHHH-hcccCCCccCcEEeccCcccCCchhhhhcCC-CCCCEEEEeecCC
Q 018493           55 TIRVRVKY-GSIYHEIHI--NSQATFGELKKLL-TGPTGLHHEDQKLIYKDKERDSKAFLDVVGV-KDKSKLVLVEDPI  128 (355)
Q Consensus        55 ~I~V~VK~-gg~~~~V~V--~~~sTVgdLK~~I-~e~TGVppe~QKLIykGK~ldD~~tLs~~GI-KdgSkImLv~~p~  128 (355)
                      +|.|+||+ .+.++.|+|  ++++||++||++| ++.+|+|+++|||||+||.|+|+.+|++||| ++|++|+|++.|.
T Consensus         1 mmqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~~   79 (87)
T 2lxa_A            1 MVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKPN   79 (87)
T ss_dssp             CCEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECCC
T ss_pred             CEEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCCC
Confidence            47889997 456676664  4999999999999 9999999999999999999999999999999 6999999999775

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A

Probab=99.62  E-value=1.2e-15  Score=120.27  Aligned_cols=74  Identities=24%  Similarity=0.336  Sum_probs=69.5

Q ss_pred             CCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeecC
Q 018493           53 PPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVEDP  127 (355)
Q Consensus        53 ~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~p  127 (355)
                      .++|.|+|++ .+..+.|+|++++||.+||++|++.+|+|+++|||+|+|+.|+|+.+|.+||| +|++|+|+...
T Consensus         3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~   77 (90)
T 4dwf_A            3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERA   77 (90)
T ss_dssp             CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECC
T ss_pred             CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecC
Confidence            4689999998 57889999999999999999999999999999999999999999999999999 89999999754

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.62  E-value=4.8e-16  Score=127.87  Aligned_cols=73  Identities=19%  Similarity=0.237  Sum_probs=67.5

Q ss_pred             eeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeecC
Q 018493           55 TIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVEDP  127 (355)
Q Consensus        55 ~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~p  127 (355)
                      +|.|+|++ +|..+.|+|++++||++||++|++.+|+|+++|||+|+|+.|+|+.+|++|||++|++|+|+..+
T Consensus         1 mm~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~   74 (106)
T 3m62_B            1 MVSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQ   74 (106)
T ss_dssp             --CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC
T ss_pred             CEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcC
Confidence            47889997 67889999999999999999999999999999999999999999999999999999999999753

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A

Probab=99.62  E-value=1.3e-15  Score=118.25  Aligned_cols=74  Identities=18%  Similarity=0.223  Sum_probs=68.5

Q ss_pred             CeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcc---cCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeecC
Q 018493           54 PTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGP---TGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVEDP  127 (355)
Q Consensus        54 ~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~---TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~p  127 (355)
                      .+|.|+|++ ++..+.++|++++||++||++|++.   +|+|+++|+|+|+|+.++|+.+|++|||++|++|+|+..+
T Consensus         4 ~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~   81 (85)
T 2wyq_A            4 MAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK   81 (85)
T ss_dssp             CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC-
T ss_pred             ceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcC
Confidence            568999998 4788999999999999999999997   9999999999999999999999999999999999999754

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}

Probab=99.61  E-value=8.3e-16  Score=149.25  Aligned_cols=77  Identities=23%  Similarity=0.284  Sum_probs=70.7

Q ss_pred             CCCeeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEe---ccCcccCCchhhhhcCCCCCCEEEEeecCC
Q 018493           52 PPPTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLI---YKDKERDSKAFLDVVGVKDKSKLVLVEDPI  128 (355)
Q Consensus        52 ~~~~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLI---ykGK~ldD~~tLs~~GIKdgSkImLv~~p~  128 (355)
                      ....|+|+|||+|+.|.|+|++++||++||++|++.|||||++||||   |+||.++|+.+|++|||++|++|||||+++
T Consensus         2 ~~~~i~i~Vk~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~~   81 (320)
T 3shq_A            2 EVKEVVVIVKWSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGSTE   81 (320)
T ss_dssp             --CEEEEEEEETTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCCC
T ss_pred             CCceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccch
Confidence            35689999999999999999999999999999999999999999999   899999999999999999999999999765

>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A

Probab=99.61  E-value=1.5e-15  Score=124.51  Aligned_cols=77  Identities=19%  Similarity=0.271  Sum_probs=67.0

Q ss_pred             CCCCeeEEEEEe-CCEEEEE--EEcCCCCHHHHHHHH-hcccCCCccCcEEeccCcccCCchhhhhcCC-CCCCEEEEee
Q 018493           51 APPPTIRVRVKY-GSIYHEI--HINSQATFGELKKLL-TGPTGLHHEDQKLIYKDKERDSKAFLDVVGV-KDKSKLVLVE  125 (355)
Q Consensus        51 ~~~~~I~V~VK~-gg~~~~V--~V~~~sTVgdLK~~I-~e~TGVppe~QKLIykGK~ldD~~tLs~~GI-KdgSkImLv~  125 (355)
                      ...+.|.|+||+ .|.++.+  +|++++||++||++| ++.+|+|+++|||||+||.|+|+.+|++||| ++|++|+||.
T Consensus        15 ~~~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmv   94 (98)
T 4a20_A           15 MDNAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMI   94 (98)
T ss_dssp             ---CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEE
T ss_pred             CCCCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEE
Confidence            456789999998 4555555  667999999999999 9999999999999999999999999999999 9999999998


Q ss_pred             cC
Q 018493          126 DP  127 (355)
Q Consensus       126 ~p  127 (355)
                      ++
T Consensus        95 sk   96 (98)
T 4a20_A           95 KP   96 (98)
T ss_dssp             CC
T ss_pred             eC
Confidence            54

>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.60  E-value=1.3e-15  Score=125.73  Aligned_cols=78  Identities=21%  Similarity=0.173  Sum_probs=68.7

Q ss_pred             CeeEEEEEe---CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeecCCch
Q 018493           54 PTIRVRVKY---GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVEDPISQ  130 (355)
Q Consensus        54 ~~I~V~VK~---gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~p~s~  130 (355)
                      ++|.|++..   ++.++.|+|++++||++||++|++..|||+++|||||+||+|+|+.+|++|||++|++||||.-+.+.
T Consensus        16 ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti~vl~lrg~~   95 (100)
T 1wju_A           16 ATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVLELKQSS   95 (100)
T ss_dssp             EEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEEECCCCCC
T ss_pred             EEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEEEEEEECCCC
Confidence            356666655   25789999999999999999999999999999999999999999999999999999999998755543


Q ss_pred             H
Q 018493          131 E  131 (355)
Q Consensus       131 E  131 (355)
                      +
T Consensus        96 ~   96 (100)
T 1wju_A           96 G   96 (100)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A

Probab=99.60  E-value=1.7e-15  Score=114.21  Aligned_cols=70  Identities=23%  Similarity=0.275  Sum_probs=65.8

Q ss_pred             eEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493           56 IRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        56 I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~  125 (355)
                      +.|+|++ .+..+.++|++++||++||++|++.+|+|+++|+|+|+|+.++|+.+|++|||++|++|+|+.
T Consensus         1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~   71 (76)
T 1ndd_A            1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVL   71 (76)
T ss_dssp             CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred             CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEE
Confidence            4688887 578899999999999999999999999999999999999999999999999999999999985

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1

Probab=99.60  E-value=2.1e-15  Score=116.43  Aligned_cols=72  Identities=18%  Similarity=0.281  Sum_probs=67.5

Q ss_pred             CeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493           54 PTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        54 ~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~  125 (355)
                      .+|.|+|++ .+..+.|+|++++||.+||++|++.+|+|+++|+|+|+|+.++|+.+|++|||++|++|+|+.
T Consensus         2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~   74 (85)
T 3mtn_B            2 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLL   74 (85)
T ss_dssp             -CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC
T ss_pred             CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEE
Confidence            468899997 568899999999999999999999999999999999999999999999999999999999985

>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.60  E-value=1.3e-15  Score=125.76  Aligned_cols=74  Identities=22%  Similarity=0.184  Sum_probs=69.4

Q ss_pred             CCCCeeEEEEEeC-CEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEe
Q 018493           51 APPPTIRVRVKYG-SIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLV  124 (355)
Q Consensus        51 ~~~~~I~V~VK~g-g~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv  124 (355)
                      ...++|.|+||.. |+++.|+|++++||++||++|++..|+|+++|+|+|.||.|+|+.+|++|||++|++|+|.
T Consensus        24 ~~~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~   98 (100)
T 1uh6_A           24 GAATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELY   98 (100)
T ss_dssp             SCCCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEE
T ss_pred             CCCCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEE
Confidence            3456799999974 7889999999999999999999999999999999999999999999999999999999986

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.59  E-value=1.3e-15  Score=121.77  Aligned_cols=75  Identities=23%  Similarity=0.263  Sum_probs=70.7

Q ss_pred             CCCeeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493           52 PPPTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED  126 (355)
Q Consensus        52 ~~~~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~  126 (355)
                      +..+|.|+|++.+..+.++|++++||.+||++|++.+|+|+++|+|+|+|+.++|+.+|.+|||++|++|+|+..
T Consensus        14 ~~~~m~i~Vk~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~   88 (96)
T 1wx8_A           14 SSRIIRVSVKTPQDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVR   88 (96)
T ss_dssp             CSCEEEEEEECSSSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBC
T ss_pred             CCCcEEEEEEECCeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEe
Confidence            456799999998888999999999999999999999999999999999999999999999999999999999864

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}

Probab=99.59  E-value=2.4e-15  Score=119.05  Aligned_cols=73  Identities=16%  Similarity=0.210  Sum_probs=68.5

Q ss_pred             CeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493           54 PTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED  126 (355)
Q Consensus        54 ~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~  126 (355)
                      .+|.|+|++ .|..+.++|++++||++||++|++.+|+|+++|+|+|+|+.++|+.+|++|||++|++|+|+..
T Consensus         3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~   76 (88)
T 2hj8_A            3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLR   76 (88)
T ss_dssp             CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC
T ss_pred             ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEE
Confidence            468899997 4688899999999999999999999999999999999999999999999999999999999874

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.59  E-value=2.3e-15  Score=121.51  Aligned_cols=76  Identities=21%  Similarity=0.248  Sum_probs=70.2

Q ss_pred             CCCCeeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCc-hhhhhcCCCCCCEEEEeec
Q 018493           51 APPPTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSK-AFLDVVGVKDKSKLVLVED  126 (355)
Q Consensus        51 ~~~~~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~-~tLs~~GIKdgSkImLv~~  126 (355)
                      .....|.|.|++.+.++.|+|++++||++||++|++.+|+|+++|+|+|+||.|+|+ .+|++|||++|++|+|+..
T Consensus        11 ~~~~~~~I~Vk~~~~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r   87 (94)
T 2kan_A           11 AAVRKIHVTVKFPSKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLK   87 (94)
T ss_dssp             SSSCCEEEEEECSSCEEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEEC
T ss_pred             cCCCCEEEEEEcCCcEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEe
Confidence            345679999998655899999999999999999999999999999999999999999 9999999999999999864

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.59  E-value=2.6e-15  Score=122.45  Aligned_cols=75  Identities=19%  Similarity=0.224  Sum_probs=69.8

Q ss_pred             CeeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeecCC
Q 018493           54 PTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVEDPI  128 (355)
Q Consensus        54 ~~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~p~  128 (355)
                      ..|.|+|++.+..+.++|++++||++||++|++.+|+|+++|+|+|+|+.++|+.+|++|||++|++|+|+....
T Consensus        24 ~~m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~   98 (101)
T 2klc_A           24 KIMKVTVKTPKEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQ   98 (101)
T ss_dssp             CCEEEEEECSSCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCS
T ss_pred             CeEEEEEEeCCcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCC
Confidence            468889998778899999999999999999999999999999999999999999999999999999999997543

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B

Probab=99.59  E-value=1.6e-15  Score=120.28  Aligned_cols=70  Identities=23%  Similarity=0.275  Sum_probs=65.8

Q ss_pred             eEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493           56 IRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        56 I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~  125 (355)
                      +.|+|+. .+..+.|+|++++||.+||++|++.+|+|+++|||+|+|+.++|+.+|++|||++|++|+|+.
T Consensus         1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~   71 (88)
T 4fbj_B            1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVL   71 (88)
T ss_dssp             CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEEC
T ss_pred             CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEE
Confidence            4678885 678899999999999999999999999999999999999999999999999999999999985

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.59  E-value=3.4e-15  Score=121.75  Aligned_cols=77  Identities=23%  Similarity=0.277  Sum_probs=70.4

Q ss_pred             CCCCeeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeecC
Q 018493           51 APPPTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVEDP  127 (355)
Q Consensus        51 ~~~~~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~p  127 (355)
                      ....+|.|+|++.+..+.++|++++||++||++|++.+|+|+++|+|+|+|+.++|+.+|++|||++|++|+|+...
T Consensus        18 ~~~~~m~I~Vk~~~g~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~   94 (100)
T 1yqb_A           18 GSPHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKR   94 (100)
T ss_dssp             CCTTEEEEEEECSSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECC
T ss_pred             CCCCeEEEEEEcCCCcEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcC
Confidence            44567999999865458999999999999999999999999999999999999999999999999999999998653

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.59  E-value=3.7e-15  Score=114.21  Aligned_cols=72  Identities=15%  Similarity=0.227  Sum_probs=65.2

Q ss_pred             eeEEEEEe-CCEE-EEEE-EcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493           55 TIRVRVKY-GSIY-HEIH-INSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED  126 (355)
Q Consensus        55 ~I~V~VK~-gg~~-~~V~-V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~  126 (355)
                      .+.|.|++ .|+. +.++ |++++||++||++|++.+|+|+++|+|+|+|+.++|+.+|++|||++|++|+|+..
T Consensus         2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r   76 (78)
T 2faz_A            2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVR   76 (78)
T ss_dssp             CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEEC
T ss_pred             cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEe
Confidence            46778886 3444 6899 99999999999999999999999999999999999999999999999999999864

>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}

Probab=99.59  E-value=1.5e-15  Score=122.61  Aligned_cols=75  Identities=20%  Similarity=0.281  Sum_probs=67.9

Q ss_pred             CCCCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493           51 APPPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        51 ~~~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~  125 (355)
                      ..+..|.|+|+. .+..+.|+|++++||.+||++|++.+|+|+++|||+|+|+.++|+.+|.+|||++|++|+|+.
T Consensus        18 ~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~   93 (98)
T 4hcn_B           18 FQGRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL   93 (98)
T ss_dssp             ----CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEEC
T ss_pred             CCCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEE
Confidence            345569999995 678899999999999999999999999999999999999999999999999999999999985

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.59  E-value=1.6e-15  Score=121.64  Aligned_cols=75  Identities=20%  Similarity=0.322  Sum_probs=66.9

Q ss_pred             CCCCeeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493           51 APPPTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED  126 (355)
Q Consensus        51 ~~~~~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~  126 (355)
                      .....|.|+|++ +..+.++|++++||.+||++|++.+|+|+++|+|+|+|+.++|+.+|.+|||++|++|+|+..
T Consensus        15 ~~~~~m~I~Vk~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~r   89 (93)
T 2l7r_A           15 VPRGSMQLFVRA-QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGR   89 (93)
T ss_dssp             -----CEEEEES-SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECC
T ss_pred             CCCCcEEEEEEC-CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEe
Confidence            345678999999 688999999999999999999999999999999999999999999999999999999999853

>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.59  E-value=2.2e-15  Score=124.14  Aligned_cols=75  Identities=16%  Similarity=0.271  Sum_probs=68.3

Q ss_pred             CCCCeeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEec-cCcccCCchhhhhcCCCCCCEEEEee
Q 018493           51 APPPTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIY-KDKERDSKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        51 ~~~~~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIy-kGK~ldD~~tLs~~GIKdgSkImLv~  125 (355)
                      .+..++.++|+|+++.|.|+|++++||++||++|+++|||||++|||+| +|+.++|+.+|++|||++|++|||+-
T Consensus         5 ~~~~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gkL~D~~tLs~~~I~~gstL~lvl   80 (100)
T 2dzm_A            5 SSGRMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGDVEDSTVLKSLHLPKNNSLYVLT   80 (100)
T ss_dssp             CCCCEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSCCCTTSBHHHHCCCSEEEEEECC
T ss_pred             CCcceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCCCCCcCCHHHcCCCCCCEEEEEe
Confidence            3456899999999999999999999999999999999999999999996 44448999999999999999999974

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=99.59  E-value=1.7e-15  Score=117.23  Aligned_cols=72  Identities=19%  Similarity=0.292  Sum_probs=66.5

Q ss_pred             CeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493           54 PTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        54 ~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~  125 (355)
                      .+|.|+|++ .+..+.++|++++||.+||++|++.+|+|+++|+|+|+|+.++|+.+|++|||++|++|+|+.
T Consensus         2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~   74 (85)
T 3n3k_B            2 SHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLL   74 (85)
T ss_dssp             --CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEE
T ss_pred             CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEE
Confidence            467889996 568899999999999999999999999999999999999999999999999999999999985

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.58  E-value=4.1e-16  Score=127.52  Aligned_cols=72  Identities=19%  Similarity=0.372  Sum_probs=68.2

Q ss_pred             eeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493           55 TIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED  126 (355)
Q Consensus        55 ~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~  126 (355)
                      .|+|+|++++..+.|+|++++||++||++|++.+|+|+++|||+|+|+.++|+.+|++|||++|++|+|+.+
T Consensus        28 ~i~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~~   99 (101)
T 3m63_B           28 SLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS   99 (101)
T ss_dssp             -CCEEEECSSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECCC
T ss_pred             EEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence            478899998889999999999999999999999999999999999999999999999999999999999874

>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.58  E-value=2.9e-15  Score=123.22  Aligned_cols=80  Identities=16%  Similarity=0.258  Sum_probs=71.0

Q ss_pred             CCCCCCeeEEEEEeCCE----EEEEEEcC---------CCCHHHHHHHHhccc--CCCccC-cEEeccCcccCCchhhhh
Q 018493           49 TSAPPPTIRVRVKYGSI----YHEIHINS---------QATFGELKKLLTGPT--GLHHED-QKLIYKDKERDSKAFLDV  112 (355)
Q Consensus        49 ~~~~~~~I~V~VK~gg~----~~~V~V~~---------~sTVgdLK~~I~e~T--GVppe~-QKLIykGK~ldD~~tLs~  112 (355)
                      .++....|.|+||+.+.    .|.|+|++         ++||++||++|++.+  |+|+++ |||||+||.|+|+.+|++
T Consensus         6 ~~~~~~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~   85 (107)
T 1x1m_A            6 SGMSLSDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDF   85 (107)
T ss_dssp             CCCCCCSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHH
T ss_pred             CCccCCceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHH
Confidence            35667779999998544    88999665         599999999999999  999999 999999999999999999


Q ss_pred             cCCCCCCEEEEeecCC
Q 018493          113 VGVKDKSKLVLVEDPI  128 (355)
Q Consensus       113 ~GIKdgSkImLv~~p~  128 (355)
                      |||++|++|+|+....
T Consensus        86 y~i~~g~~i~lv~~~~  101 (107)
T 1x1m_A           86 YGIQPGSTVHVLRKSW  101 (107)
T ss_dssp             HTCCTTCEEEEEESSC
T ss_pred             cCCCCCCEEEEEeCCC
Confidence            9999999999997543

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...

Probab=99.58  E-value=3.2e-15  Score=112.70  Aligned_cols=71  Identities=20%  Similarity=0.299  Sum_probs=66.0

Q ss_pred             eEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493           56 IRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED  126 (355)
Q Consensus        56 I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~  126 (355)
                      +.|+|++ ++..+.++|++++||++||++|++.+|+|+++|+|+|+|+.++|+.+|++|||++|++|+|+..
T Consensus         1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~   72 (76)
T 3a9j_A            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLR   72 (76)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEEC
T ss_pred             CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEe
Confidence            4678887 5678999999999999999999999999999999999999999999999999999999999864

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.58  E-value=4.9e-15  Score=121.52  Aligned_cols=74  Identities=11%  Similarity=0.184  Sum_probs=69.8

Q ss_pred             CCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493           53 PPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED  126 (355)
Q Consensus        53 ~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~  126 (355)
                      ...|.|+|++ +|..+.++|++++||++||.+|+..+|+|+++|||+|+|+.++|+.+|.+|||++|++|+|+..
T Consensus        21 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~   95 (106)
T 1ttn_A           21 GYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVS   95 (106)
T ss_dssp             CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECC
T ss_pred             CCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEe
Confidence            4469999997 6789999999999999999999999999999999999999999999999999999999999975

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.58  E-value=6.2e-15  Score=115.80  Aligned_cols=74  Identities=19%  Similarity=0.202  Sum_probs=68.1

Q ss_pred             CCeeEEEEEe-CC-EEEEE-EEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493           53 PPTIRVRVKY-GS-IYHEI-HINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED  126 (355)
Q Consensus        53 ~~~I~V~VK~-gg-~~~~V-~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~  126 (355)
                      ..+|.|+|++ .+ ..+.| +|++++||.+||++|++.+|+|+++|+|+|+|+.++|+.+|.+|||++|++|+|+..
T Consensus         5 ~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~   81 (89)
T 1wy8_A            5 SSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVR   81 (89)
T ss_dssp             SSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEEC
T ss_pred             CCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEe
Confidence            4678999997 35 68999 599999999999999999999999999999999999999999999999999999854

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.58  E-value=4.6e-15  Score=119.15  Aligned_cols=71  Identities=23%  Similarity=0.306  Sum_probs=66.2

Q ss_pred             eEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcc---cCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493           56 IRVRVKY-GSIYHEIHINSQATFGELKKLLTGP---TGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED  126 (355)
Q Consensus        56 I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~---TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~  126 (355)
                      +.|+|++ .+..+.++|++++||++||++|++.   +|+|+++|+|+|+|+.++|+.+|++|||++|++|+|+..
T Consensus         1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~   75 (95)
T 1uel_A            1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVT   75 (95)
T ss_dssp             CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEES
T ss_pred             CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEe
Confidence            4688887 4788999999999999999999999   899999999999999999999999999999999999864

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.58  E-value=4.2e-15  Score=121.15  Aligned_cols=73  Identities=16%  Similarity=0.335  Sum_probs=65.6

Q ss_pred             CeeEEEEEe--CC---EEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCc-hhhhhcCCCCCCEEEEeec
Q 018493           54 PTIRVRVKY--GS---IYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSK-AFLDVVGVKDKSKLVLVED  126 (355)
Q Consensus        54 ~~I~V~VK~--gg---~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~-~tLs~~GIKdgSkImLv~~  126 (355)
                      ..|.|+|++  ++   +.|.|+|++++||++||++|++.+|||+++|+|+|+|+.|+|+ .+|.+|||++|++|+|+..
T Consensus         6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~   84 (102)
T 1v5o_A            6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQK   84 (102)
T ss_dssp             CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBC
T ss_pred             CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEEC
Confidence            456666665  54   7899999999999999999999999999999999999998877 6999999999999999864

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.57  E-value=3e-15  Score=119.46  Aligned_cols=74  Identities=24%  Similarity=0.196  Sum_probs=66.1

Q ss_pred             CCeeEEEEEeC-CE--EEEEEEcCCCCHHHHHHHHhccc--CCCccCcEEeccCcccCCchhhhhc--CCCCCCEEEEee
Q 018493           53 PPTIRVRVKYG-SI--YHEIHINSQATFGELKKLLTGPT--GLHHEDQKLIYKDKERDSKAFLDVV--GVKDKSKLVLVE  125 (355)
Q Consensus        53 ~~~I~V~VK~g-g~--~~~V~V~~~sTVgdLK~~I~e~T--GVppe~QKLIykGK~ldD~~tLs~~--GIKdgSkImLv~  125 (355)
                      ...|.|+|++. +.  .+.|++++++||++||++|++.+  |+|+++|||||+||.|+|+.+|++|  ||++|++|+|+.
T Consensus         5 ~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~   84 (93)
T 1wgd_A            5 SSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVC   84 (93)
T ss_dssp             SCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEEC
T ss_pred             CcEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEe
Confidence            45689999984 34  46677779999999999999999  9999999999999999999999999  999999999985


Q ss_pred             c
Q 018493          126 D  126 (355)
Q Consensus       126 ~  126 (355)
                      .
T Consensus        85 ~   85 (93)
T 1wgd_A           85 N   85 (93)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.56  E-value=7e-15  Score=120.28  Aligned_cols=74  Identities=24%  Similarity=0.289  Sum_probs=68.6

Q ss_pred             CCeeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493           53 PPTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED  126 (355)
Q Consensus        53 ~~~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~  126 (355)
                      ..+|+|+|++.+..+.|+|++++||.+||++|++.+||++++|||+|+|+.|+|+.+|.+|||++|++|+|+..
T Consensus        15 ~~~m~I~Vk~~~g~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~   88 (106)
T 1wx7_A           15 PHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIK   88 (106)
T ss_dssp             SSEEEEEEECSSCEEEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEEC
T ss_pred             CceEEEEEEeCCCcEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEc
Confidence            45699999986545899999999999999999999999999999999999999999999999999999999964

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A

Probab=99.56  E-value=5.8e-15  Score=117.50  Aligned_cols=71  Identities=20%  Similarity=0.303  Sum_probs=66.4

Q ss_pred             eEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493           56 IRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED  126 (355)
Q Consensus        56 I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~  126 (355)
                      |.|+|++ .+..+.|+|++++||.+||++|++.+|+|+++|+|+|+|+.++|+.+|.+|||++|++|+|+..
T Consensus         2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r   73 (96)
T 3k9o_B            2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR   73 (96)
T ss_dssp             CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred             cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEE
Confidence            5788886 5688999999999999999999999999999999999999999999999999999999999853

>1t7s_A BAG-1 cochaperone; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.80A {Caenorhabditis elegans} SCOP: a.7.7.1

Probab=99.53  E-value=2e-14  Score=124.09  Aligned_cols=107  Identities=21%  Similarity=0.205  Sum_probs=87.7

Q ss_pred             CEEEEeecCCchHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhh-hhHHHHHH-------HHHhCCCcchhhHhhHHHHHH
Q 018493          119 SKLVLVEDPISQEKRLLEMRKNAKLEKASKSISEISLEVDRLA-GQVSALES-------IITKGGKVAEKDVLNLIELLM  190 (355)
Q Consensus       119 SkImLv~~p~s~E~~~~e~kk~k~ieka~~aIs~V~~eVDkLa-~ev~~LE~-------~I~~g~Kv~eke~~~LsE~LM  190 (355)
                      ++|||+|++.++|++ .+.+....+++++.   .+...++.+. .++..||+       ...+.+|+ ++++..++|.+|
T Consensus         1 ~KvMvlGkk~~~eed-~~lK~L~~~Ek~~~---~~~~kl~~~n~~el~~iekGFL~k~l~~ea~kkl-dKrik~~~E~~M   75 (137)
T 1t7s_A            1 DKIIVMGGKNALVDD-AGFKMLMQYEKHNL---SNLQKAYDLNLRDVADLERGFLEKPKQVEMGKKL-EKKVKYFNEEAE   75 (137)
T ss_dssp             CCCEEECSSSEEECH-HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred             CceeeeCCCCCcchh-HHHHHHHHHHHHHH---HHHHHHHHccHHHHHHHHHhhhccHhHHhHHHHH-HHHHHHHHHHHH
Confidence            589999999998888 67777777776544   4556777777 77888876       34455677 999999999999


Q ss_pred             HHHHhccCCC--C-------ChhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 018493          191 NQLLKLDGIM--A-------DGDVKLQRKMQVRRVQKYVETLDMLKIKN  230 (355)
Q Consensus       191 q~LLKLD~Ie--a-------eGdaR~qRK~~VkrVQ~~Le~LD~lk~~n  230 (355)
                      +.|++|||+.  .       ..++|.+||.+|++||.+|.+||.+.++-
T Consensus        76 K~LE~LDsl~i~~~~t~~~q~~~~R~KRK~lV~~IQ~~L~~~D~l~~~i  124 (137)
T 1t7s_A           76 RHLETLDGMNIITETTPENQAKRNREKRKTLVNGIQTLLNQNDALLRRL  124 (137)
T ss_dssp             HHHHHHHTEEECCCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcccCCcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHHHH
Confidence            9999999992  2       24899999999999999999999999873

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B

Probab=99.53  E-value=1.7e-14  Score=115.91  Aligned_cols=71  Identities=20%  Similarity=0.303  Sum_probs=66.2

Q ss_pred             eEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493           56 IRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED  126 (355)
Q Consensus        56 I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~  126 (355)
                      +.|+|++ ++..+.++|++++||++||++|++.+|+|+++|+|+|+|+.++|+.+|++|||++|++|+|+..
T Consensus         1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~   72 (98)
T 1yx5_B            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR   72 (98)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEe
Confidence            4678887 5678899999999999999999999999999999999999999999999999999999999864

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1

Probab=99.53  E-value=1.4e-14  Score=114.72  Aligned_cols=71  Identities=20%  Similarity=0.324  Sum_probs=65.1

Q ss_pred             eEEEEE-eCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493           56 IRVRVK-YGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED  126 (355)
Q Consensus        56 I~V~VK-~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~  126 (355)
                      +.|.|+ +.|+.+.++|++++||++||++|++.+|+|+++|||+|+|+.++|+.+|++|||++|++|+|+..
T Consensus        10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r   81 (88)
T 1sif_A           10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR   81 (88)
T ss_dssp             CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC-
T ss_pred             eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEe
Confidence            566666 46788999999999999999999999999999999999999999999999999999999999863

>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}

Probab=99.52  E-value=3.7e-14  Score=113.35  Aligned_cols=72  Identities=14%  Similarity=0.069  Sum_probs=65.4

Q ss_pred             eeEEEEEe---CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEecc-------CcccCCchhhhhcCCCCCCEEEEe
Q 018493           55 TIRVRVKY---GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYK-------DKERDSKAFLDVVGVKDKSKLVLV  124 (355)
Q Consensus        55 ~I~V~VK~---gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIyk-------GK~ldD~~tLs~~GIKdgSkImLv  124 (355)
                      .|+|.|.|   +...+++.|++++||++||++|+..+|+||++|||+|+       |+.++|+.+|++|||++|++|||+
T Consensus         2 ~V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlv   81 (86)
T 4b6w_A            2 VVKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVV   81 (86)
T ss_dssp             EEEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEE
T ss_pred             EEEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEE
Confidence            57888887   34678999999999999999999999999999999975       788999999999999999999999


Q ss_pred             ec
Q 018493          125 ED  126 (355)
Q Consensus       125 ~~  126 (355)
                      ..
T Consensus        82 d~   83 (86)
T 4b6w_A           82 DL   83 (86)
T ss_dssp             EC
T ss_pred             eC
Confidence            63

>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B

Probab=99.51  E-value=2.4e-14  Score=110.04  Aligned_cols=73  Identities=10%  Similarity=0.211  Sum_probs=67.9

Q ss_pred             CeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493           54 PTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED  126 (355)
Q Consensus        54 ~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~  126 (355)
                      ..|.|+|+. .+..+.++|.+++||++||++|++..|+|+++|+|+|.|+.++|+.+|++|||++|++|+|+..
T Consensus         2 ~~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~   75 (79)
T 2uyz_B            2 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE   75 (79)
T ss_dssp             CEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEEC
T ss_pred             CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEe
Confidence            358899996 5678899999999999999999999999999999999999999999999999999999999853

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}

Probab=99.51  E-value=3.1e-14  Score=117.62  Aligned_cols=76  Identities=18%  Similarity=0.262  Sum_probs=70.2

Q ss_pred             CCCCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493           51 APPPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED  126 (355)
Q Consensus        51 ~~~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~  126 (355)
                      .+...|.|+|++ .+..+.++|++++||++||++|++.+|+|+++|+|+|+|+.++|+.+|++|||++|++|+|+..
T Consensus        31 ~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~r  107 (111)
T 2ojr_A           31 DELLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR  107 (111)
T ss_dssp             GGSSCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEEC
T ss_pred             CCCCeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEe
Confidence            345679999997 5688999999999999999999999999999999999999999999999999999999999863

>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.51  E-value=5.9e-14  Score=112.16  Aligned_cols=72  Identities=18%  Similarity=0.226  Sum_probs=66.6

Q ss_pred             CCCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCc-hhhhhcCCCCCCEEEEeec
Q 018493           52 PPPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSK-AFLDVVGVKDKSKLVLVED  126 (355)
Q Consensus        52 ~~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~-~tLs~~GIKdgSkImLv~~  126 (355)
                      ....|.|+|++ .+..+.++|++++||++||++|++.+   +++|||+|+|+.|+|+ .+|.+|||++|++|+|+..
T Consensus         4 ~~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~   77 (95)
T 1wia_A            4 GSSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRS   77 (95)
T ss_dssp             CCCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECC
T ss_pred             CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEEC
Confidence            45679999997 57889999999999999999999998   8999999999999888 9999999999999999964

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.51  E-value=2.8e-14  Score=117.77  Aligned_cols=72  Identities=24%  Similarity=0.228  Sum_probs=65.7

Q ss_pred             CeeEEEEEe----CCEEEEEEEcC-CCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493           54 PTIRVRVKY----GSIYHEIHINS-QATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        54 ~~I~V~VK~----gg~~~~V~V~~-~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~  125 (355)
                      ..|.|+|+.    ++..+.++|++ ++||++||++|++.+|+|+++|+|+|+|+.++|+.+|++|||++|++|+|+.
T Consensus        26 ~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~  102 (111)
T 1we6_A           26 GPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSL  102 (111)
T ss_dssp             SCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEEC
T ss_pred             CcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEE
Confidence            346777775    46778899998 9999999999999999999999999999999999999999999999999985

>1hx1_B BAG-1, BAG-family molecular chaperone regulator-1; protein-protein complex, apoptosis, protein folding, molecul chaperone; 1.90A {Homo sapiens} SCOP: a.7.7.1 PDB: 3fzf_B* 3fzh_B* 3fzk_B* 3fzl_B* 3fzm_B* 3ldq_B* 3m3z_B*

Probab=99.50  E-value=1.4e-13  Score=115.50  Aligned_cols=98  Identities=23%  Similarity=0.365  Sum_probs=81.5

Q ss_pred             chHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhHHHHHH-------HHHhCCCcchhhHhhHHHHHHHHHHhccCCC-
Q 018493          129 SQEKRLLEMRKNAKLEKASKSISEISLEVDRLAGQVSALES-------IITKGGKVAEKDVLNLIELLMNQLLKLDGIM-  200 (355)
Q Consensus       129 s~E~~~~e~kk~k~ieka~~aIs~V~~eVDkLa~ev~~LE~-------~I~~g~Kv~eke~~~LsE~LMq~LLKLD~Ie-  200 (355)
                      ++|++ .++++.+++++++   ..+...+|.+..++..||+       ...+.+|+ ++++..++|.||+.|++||++. 
T Consensus         3 ~peeE-~~lK~L~~veksv---~~~~kkl~~~~~el~~iekGFL~kel~~eal~kl-dKrik~~~E~~MK~LE~lDsl~i   77 (114)
T 1hx1_B            3 SPQEE-VELKKLKHLEKSV---EKIADQLEELNKELTGIQQGFLPKDLQAEALCKL-DRRVKATIEQFMKILEEIDTLIL   77 (114)
T ss_dssp             CHHHH-HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             ChHHH-HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHcccccHhHHHHHHHH-HHHHHHHHHHHHHHHHHhhcccC
Confidence            56666 5577777777654   5667788888899999877       34456788 9999999999999999999994 


Q ss_pred             --CChhhHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 018493          201 --ADGDVKLQRKMQVRRVQKYVETLDMLKIKNS  231 (355)
Q Consensus       201 --aeGdaR~qRK~~VkrVQ~~Le~LD~lk~~n~  231 (355)
                        ...++|.+||.+|++||++|.+||.+.++..
T Consensus        78 ~e~~~~~R~kRK~lV~~iQ~~l~~cD~l~~~i~  110 (114)
T 1hx1_B           78 PENFKDSRLKRKGLVKKVQAFLAECDTVEQNIC  110 (114)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence              4559999999999999999999999998753

>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.50  E-value=3.3e-14  Score=114.44  Aligned_cols=74  Identities=18%  Similarity=0.112  Sum_probs=67.1

Q ss_pred             CCCeeEEEEEeCCE--EEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccC---cc----cCCchhhhhcCCCCCCEEE
Q 018493           52 PPPTIRVRVKYGSI--YHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKD---KE----RDSKAFLDVVGVKDKSKLV  122 (355)
Q Consensus        52 ~~~~I~V~VK~gg~--~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykG---K~----ldD~~tLs~~GIKdgSkIm  122 (355)
                      ....|+|+|++.+.  .+++.|++++||++||++|+..+|+|+++|||+|+|   +.    ++|+.+|.+|||++|++|+
T Consensus         4 ~~~~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~   83 (95)
T 1v6e_A            4 GSSGVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIH   83 (95)
T ss_dssp             CCCCEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEE
T ss_pred             CCcEEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEE
Confidence            34569999999766  699999999999999999999999999999999987   43    5899999999999999999


Q ss_pred             Eee
Q 018493          123 LVE  125 (355)
Q Consensus       123 Lv~  125 (355)
                      |+.
T Consensus        84 v~d   86 (95)
T 1v6e_A           84 VID   86 (95)
T ss_dssp             EBC
T ss_pred             EEE
Confidence            986

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A

Probab=99.25  E-value=1.5e-15  Score=115.67  Aligned_cols=71  Identities=17%  Similarity=0.329  Sum_probs=65.1

Q ss_pred             eEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493           56 IRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED  126 (355)
Q Consensus        56 I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~  126 (355)
                      +.|+|++ .|..+.++|++++||++||++|++.+|+|+++|+|+|+|+.++|+.+|++|||++|++|+|+..
T Consensus         1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~r   72 (76)
T 3b1l_X            1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQR   72 (76)
Confidence            3577776 4677889999999999999999999999999999999999999999999999999999999853

>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=3e-14  Score=120.90  Aligned_cols=78  Identities=17%  Similarity=0.079  Sum_probs=70.3

Q ss_pred             CCCCeeEEEEE--eCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeecCC
Q 018493           51 APPPTIRVRVK--YGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVEDPI  128 (355)
Q Consensus        51 ~~~~~I~V~VK--~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~p~  128 (355)
                      .-.+.|+|+|+  .++..+.++|++++||++||+.|++..++|+++|+|||+||.++|+++|.+|||++|.+|+|+....
T Consensus        11 ~~~~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~   90 (118)
T 2daf_A           11 VEDSLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFST   90 (118)
T ss_dssp             CCSSCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEES
T ss_pred             ccCccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecC
Confidence            34566888876  3578899999999999999999999999999999999999999999999999999999999996543

>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A

Probab=99.50  E-value=3.5e-14  Score=117.57  Aligned_cols=73  Identities=19%  Similarity=0.287  Sum_probs=68.5

Q ss_pred             CeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493           54 PTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED  126 (355)
Q Consensus        54 ~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~  126 (355)
                      ..|.|+|+. .+..+.|.|++++||.+||.+|++.+|+|+++|||+|+|+.++|+.+|++|||++|++|+|+..
T Consensus        34 ~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~r  107 (111)
T 3vdz_A           34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR  107 (111)
T ss_dssp             GCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEEC
T ss_pred             ccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEe
Confidence            369999995 6788999999999999999999999999999999999999999999999999999999999853

>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A

Probab=99.50  E-value=2.9e-14  Score=120.94  Aligned_cols=72  Identities=18%  Similarity=0.149  Sum_probs=68.0

Q ss_pred             eeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCC-------CCCEEEEeec
Q 018493           55 TIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVK-------DKSKLVLVED  126 (355)
Q Consensus        55 ~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIK-------dgSkImLv~~  126 (355)
                      .|.|+|+++..++.++|.+++||++||++|++++|||+++|||||.||.|+|+.+|++|||+       ++++|+|+-.
T Consensus         2 ~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr   80 (118)
T 2fnj_B            2 DVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR   80 (118)
T ss_dssp             EEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred             cEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence            37889999988899999999999999999999999999999999999999999999999999       7999999854

>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*

Probab=99.49  E-value=3.7e-14  Score=120.39  Aligned_cols=72  Identities=17%  Similarity=0.149  Sum_probs=68.7

Q ss_pred             eeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCC-------CCEEEEeec
Q 018493           55 TIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKD-------KSKLVLVED  126 (355)
Q Consensus        55 ~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKd-------gSkImLv~~  126 (355)
                      .+.|+|+++..++.+++.+++||.+||++|++..|+|+++|||||.||.|+|+.+|++|||++       +++|+|+-.
T Consensus         2 ~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr   80 (118)
T 4ajy_B            2 DVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR   80 (118)
T ss_dssp             EEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred             ceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence            378999999999999999999999999999999999999999999999999999999999999       999999843

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}

Probab=99.49  E-value=5.3e-14  Score=123.49  Aligned_cols=76  Identities=18%  Similarity=0.282  Sum_probs=69.5

Q ss_pred             CCCCeeEEEEE-eCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493           51 APPPTIRVRVK-YGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED  126 (355)
Q Consensus        51 ~~~~~I~V~VK-~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~  126 (355)
                      .+...|.|+|+ ++++++.|+|++++||++||++|++.+|+|+++|||+|+|+.++|+.+|++|||++|++|+|+..
T Consensus        16 ~~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~   92 (172)
T 3u30_A           16 PRGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR   92 (172)
T ss_dssp             ---CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEEC
T ss_pred             CCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeec
Confidence            44567999999 57899999999999999999999999999999999999999999999999999999999999853

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C

Probab=99.48  E-value=5.5e-14  Score=113.56  Aligned_cols=74  Identities=9%  Similarity=0.187  Sum_probs=69.0

Q ss_pred             CCCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493           52 PPPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        52 ~~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~  125 (355)
                      +...|.|+|+. .|..+.+.|.+++||++||++|++..|||+++|+|+|.|+.|+|+.+|++|||++|++|+|+.
T Consensus        18 ~~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~   92 (97)
T 1wyw_B           18 EGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQ   92 (97)
T ss_dssp             -CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEE
T ss_pred             CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEE
Confidence            45679999996 568899999999999999999999999999999999999999999999999999999999985

>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}

Probab=99.48  E-value=7.7e-14  Score=113.49  Aligned_cols=75  Identities=23%  Similarity=0.221  Sum_probs=66.9

Q ss_pred             CCCCeeEEEEEeCC---EEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEecc--Cc---c-cCCchhhhhcCCCCCCEE
Q 018493           51 APPPTIRVRVKYGS---IYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYK--DK---E-RDSKAFLDVVGVKDKSKL  121 (355)
Q Consensus        51 ~~~~~I~V~VK~gg---~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIyk--GK---~-ldD~~tLs~~GIKdgSkI  121 (355)
                      .+...|+|.|++..   ..+++.|++++||++||++|+..+|||+++|||+|+  |+   . ++|+.+|++|||++|++|
T Consensus        11 ~~~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gsti   90 (95)
T 2kjr_A           11 GKSDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRL   90 (95)
T ss_dssp             CCCCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEE
T ss_pred             CCCCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEE
Confidence            45678999999854   379999999999999999999999999999999998  45   3 489999999999999999


Q ss_pred             EEee
Q 018493          122 VLVE  125 (355)
Q Consensus       122 mLv~  125 (355)
                      +|+.
T Consensus        91 hlvD   94 (95)
T 2kjr_A           91 HVVD   94 (95)
T ss_dssp             EEEE
T ss_pred             EEEC
Confidence            9974

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A

Probab=99.47  E-value=8.5e-14  Score=115.65  Aligned_cols=62  Identities=15%  Similarity=0.078  Sum_probs=59.8

Q ss_pred             CEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493           64 SIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        64 g~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~  125 (355)
                      |..+.|+|++++||.+||++|++.+|+|+++|+|+|+|+.++|+.+|++|||++|++|+|+.
T Consensus        45 G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~lv~  106 (115)
T 1we7_A           45 GQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIHLAL  106 (115)
T ss_dssp             SEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEEEEE
T ss_pred             CeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEE
Confidence            57899999999999999999999999999999999999999999999999999999999985

>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.47  E-value=3e-14  Score=118.41  Aligned_cols=75  Identities=17%  Similarity=0.238  Sum_probs=66.8

Q ss_pred             CCCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCcc---------------CcEEeccCccc-CCchhhhhcC
Q 018493           52 PPPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHE---------------DQKLIYKDKER-DSKAFLDVVG  114 (355)
Q Consensus        52 ~~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe---------------~QKLIykGK~l-dD~~tLs~~G  114 (355)
                      .+..|+|+|+. .+.+++|+|++++||++||++|++.+|+|+.               +|+|||.|+.| +|+.+|++||
T Consensus         4 ~~~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dyg   83 (105)
T 1v2y_A            4 GSSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYG   83 (105)
T ss_dssp             CCCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHT
T ss_pred             CCCcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcC
Confidence            34568999985 6789999999999999999999999999984               56999999997 5779999999


Q ss_pred             CCCCCEEEEeec
Q 018493          115 VKDKSKLVLVED  126 (355)
Q Consensus       115 IKdgSkImLv~~  126 (355)
                      |++|++|+|+..
T Consensus        84 I~~g~~l~lv~~   95 (105)
T 1v2y_A           84 IRNRDEVSFIKK   95 (105)
T ss_dssp             CCSSEEEEEEEC
T ss_pred             CCCCCEEEEEeh
Confidence            999999999853

>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=99.46  E-value=4.9e-14  Score=115.53  Aligned_cols=73  Identities=19%  Similarity=0.175  Sum_probs=62.3

Q ss_pred             CCCeeEEEEEeC-CE--EEEEEEcCCCCHHHHHHHHhcc-cCCCc-cCcEEeccCcccCCchhhhhc--CCCCCCEEEEe
Q 018493           52 PPPTIRVRVKYG-SI--YHEIHINSQATFGELKKLLTGP-TGLHH-EDQKLIYKDKERDSKAFLDVV--GVKDKSKLVLV  124 (355)
Q Consensus        52 ~~~~I~V~VK~g-g~--~~~V~V~~~sTVgdLK~~I~e~-TGVpp-e~QKLIykGK~ldD~~tLs~~--GIKdgSkImLv  124 (355)
                      ....|.|+|++. +.  .+.|++++++||++||++|++. .|+|+ ++|||||+||.|+|+.+|++|  ||++|++|+|+
T Consensus        20 ~~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv   99 (99)
T 2kdb_A           20 QGHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV   99 (99)
T ss_dssp             ---CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred             CCCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence            346689999973 33  4688889999999999999985 67765 999999999999999999999  99999999985

>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.45  E-value=1.6e-13  Score=112.21  Aligned_cols=74  Identities=14%  Similarity=0.164  Sum_probs=65.9

Q ss_pred             CCeeEEEEEeCC---EEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCc---c----cCCchhhhhcCCCCCCEEE
Q 018493           53 PPTIRVRVKYGS---IYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDK---E----RDSKAFLDVVGVKDKSKLV  122 (355)
Q Consensus        53 ~~~I~V~VK~gg---~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK---~----ldD~~tLs~~GIKdgSkIm  122 (355)
                      ...|+|.|++..   ..+++.|++++||++||++|+..+||||++|||+|.|+   .    ++|+.+|++|||++|++|+
T Consensus        12 ~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ih   91 (97)
T 2kj6_A           12 DDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLH   91 (97)
T ss_dssp             CCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEE
T ss_pred             CceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEE
Confidence            457888998753   36899999999999999999999999999999999984   3    4899999999999999999


Q ss_pred             Eeec
Q 018493          123 LVED  126 (355)
Q Consensus       123 Lv~~  126 (355)
                      |+..
T Consensus        92 lvd~   95 (97)
T 2kj6_A           92 IIDL   95 (97)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            9863

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}

Probab=99.45  E-value=1.5e-13  Score=114.46  Aligned_cols=73  Identities=19%  Similarity=0.272  Sum_probs=67.4

Q ss_pred             CeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493           54 PTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED  126 (355)
Q Consensus        54 ~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~  126 (355)
                      ..+.|.|+. .|..+.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+..
T Consensus         8 ~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~   81 (114)
T 2kdi_A            8 GEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLR   81 (114)
T ss_dssp             CCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEEC
T ss_pred             CcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEE
Confidence            346778875 6688999999999999999999999999999999999999999999999999999999999864

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A

Probab=99.44  E-value=2.1e-13  Score=117.75  Aligned_cols=74  Identities=16%  Similarity=0.204  Sum_probs=68.5

Q ss_pred             CCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493           53 PPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED  126 (355)
Q Consensus        53 ~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~  126 (355)
                      ...|.|.|++ .|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.++|+.+|++|||++|++|+|+..
T Consensus        79 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~r  153 (159)
T 3rt3_B           79 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLR  153 (159)
T ss_dssp             CCCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEe
Confidence            3457888887 5788999999999999999999999999999999999999999999999999999999999853

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A

Probab=99.42  E-value=2.5e-13  Score=117.24  Aligned_cols=71  Identities=24%  Similarity=0.292  Sum_probs=67.3

Q ss_pred             eEEEEE-eCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEe-c-cCcccCCchhhhhcCCCCCCEEEEeec
Q 018493           56 IRVRVK-YGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLI-Y-KDKERDSKAFLDVVGVKDKSKLVLVED  126 (355)
Q Consensus        56 I~V~VK-~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLI-y-kGK~ldD~~tLs~~GIKdgSkImLv~~  126 (355)
                      +.|+|+ ++++.+.++|++++||++||++|++.+|+|+++|+|+ | +|+.++|+.+|++|||++|++|+|+..
T Consensus         3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~   76 (159)
T 3rt3_B            3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVD   76 (159)
T ss_dssp             CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEEC
T ss_pred             eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEcc
Confidence            678888 5788999999999999999999999999999999999 9 799999999999999999999999986

>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.42  E-value=3.2e-13  Score=114.07  Aligned_cols=79  Identities=14%  Similarity=0.164  Sum_probs=68.1

Q ss_pred             CCCCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhc------ccCC--CccCcEEeccCcccCCchhhhhcCCCCC--C
Q 018493           51 APPPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTG------PTGL--HHEDQKLIYKDKERDSKAFLDVVGVKDK--S  119 (355)
Q Consensus        51 ~~~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e------~TGV--ppe~QKLIykGK~ldD~~tLs~~GIKdg--S  119 (355)
                      .+...|.|+|+. .|.++.|+|++++||++||++|++      ..|+  ++++|||||.||.|+|+.+|++|+|+.+  +
T Consensus        12 ~~~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~   91 (116)
T 1wgh_A           12 VPADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTT   91 (116)
T ss_dssp             CCSSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEE
T ss_pred             CCCCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCce
Confidence            345679999996 568999999999999999999999      6675  6999999999999999999999999877  5


Q ss_pred             EEEEeecCCc
Q 018493          120 KLVLVEDPIS  129 (355)
Q Consensus       120 kImLv~~p~s  129 (355)
                      +|||+.....
T Consensus        92 tlhLvlr~~~  101 (116)
T 1wgh_A           92 VMHLVARETL  101 (116)
T ss_dssp             EEEEEECSSC
T ss_pred             EEEEEccCCC
Confidence            6888765443

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B

Probab=99.41  E-value=3.3e-13  Score=119.76  Aligned_cols=71  Identities=21%  Similarity=0.318  Sum_probs=65.8

Q ss_pred             eEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493           56 IRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED  126 (355)
Q Consensus        56 I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~  126 (355)
                      +.|+|+. .|+.+.++|++++||++||++|++.+|+|+++|||+|+|+.++|+.+|++|||++|++|+|+..
T Consensus         1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlr   72 (169)
T 3l0w_B            1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR   72 (169)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEE
Confidence            4677776 5688999999999999999999999999999999999999999999999999999999999853

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B

Probab=99.41  E-value=4e-13  Score=113.68  Aligned_cols=72  Identities=19%  Similarity=0.288  Sum_probs=66.7

Q ss_pred             eEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeecC
Q 018493           56 IRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVEDP  127 (355)
Q Consensus        56 I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~p  127 (355)
                      +.|+|++ ++..+.++|++++||++||++|++.+|+|+++|+|+|+|+.++|+.+|++|||++|++|+|+...
T Consensus         1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~   73 (152)
T 3b08_A            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL   73 (152)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred             CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeec
Confidence            4678885 56789999999999999999999999999999999999999999999999999999999999753

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B

Probab=99.41  E-value=1e-12  Score=111.22  Aligned_cols=72  Identities=19%  Similarity=0.294  Sum_probs=66.5

Q ss_pred             eeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493           55 TIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED  126 (355)
Q Consensus        55 ~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~  126 (355)
                      .+.|.|+. .|..+.++|++++||.+||++|++.+|+|+++|+|+|+|+.++|+.+|++|||++|++|+|+..
T Consensus        76 ~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r  148 (152)
T 3b08_A           76 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR  148 (152)
T ss_dssp             CEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred             ccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEe
Confidence            46777775 5678999999999999999999999999999999999999999999999999999999999864

>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}

Probab=99.41  E-value=5.4e-13  Score=113.94  Aligned_cols=77  Identities=14%  Similarity=0.163  Sum_probs=67.4

Q ss_pred             CCCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhc------ccCCC--ccCcEEeccCcccCCchhhhhcCCCCCC--E
Q 018493           52 PPPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTG------PTGLH--HEDQKLIYKDKERDSKAFLDVVGVKDKS--K  120 (355)
Q Consensus        52 ~~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e------~TGVp--pe~QKLIykGK~ldD~~tLs~~GIKdgS--k  120 (355)
                      ....|.|+|+. .|.++.++|++++||++||++|++      ..|+|  +++|||||.||.|+|+.+|++|||+.|+  +
T Consensus        14 ~~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~t   93 (125)
T 2gow_A           14 PADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTV   93 (125)
T ss_dssp             CTTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEE
T ss_pred             CCCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceE
Confidence            44569999986 468999999999999999999999      78885  8999999999999999999999999887  6


Q ss_pred             EEEeecCC
Q 018493          121 LVLVEDPI  128 (355)
Q Consensus       121 ImLv~~p~  128 (355)
                      |||+....
T Consensus        94 lhlv~r~~  101 (125)
T 2gow_A           94 MHLVARET  101 (125)
T ss_dssp             EEEEECSC
T ss_pred             EEEEecCC
Confidence            77775543

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p

Probab=99.40  E-value=2.2e-14  Score=121.44  Aligned_cols=70  Identities=21%  Similarity=0.324  Sum_probs=0.0

Q ss_pred             eEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493           56 IRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        56 I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~  125 (355)
                      |.|+|++ +|.++.|+|++++||++||++|++.+|||+++|+|+|+|+.++|+.+|++|||++|++|+|+.
T Consensus         1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~   71 (128)
T 3u5e_m            1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL   71 (128)
T ss_dssp             -----------------------------------------------------------------------
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEE
Confidence            4567776 567899999999999999999999999999999999999999999999999999999999985

>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1

Probab=99.40  E-value=4.3e-13  Score=112.99  Aligned_cols=73  Identities=18%  Similarity=0.219  Sum_probs=66.4

Q ss_pred             CCeeEEEEEeCCE--EEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccC---cc----cCCchhhhhcCCCCCCEEEE
Q 018493           53 PPTIRVRVKYGSI--YHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKD---KE----RDSKAFLDVVGVKDKSKLVL  123 (355)
Q Consensus        53 ~~~I~V~VK~gg~--~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykG---K~----ldD~~tLs~~GIKdgSkImL  123 (355)
                      ...|+|.|++.+.  .+++.|++++||++||.+|+..+|||+++|||+|.|   +.    ++|+.+|.+|||++|++|+|
T Consensus         4 ~~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihv   83 (122)
T 1t0y_A            4 TEVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHA   83 (122)
T ss_dssp             CCEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEE
T ss_pred             CCEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEE
Confidence            3479999999766  689999999999999999999999999999999987   42    48999999999999999999


Q ss_pred             ee
Q 018493          124 VE  125 (355)
Q Consensus       124 v~  125 (355)
                      +.
T Consensus        84 vd   85 (122)
T 1t0y_A           84 VD   85 (122)
T ss_dssp             EE
T ss_pred             Ee
Confidence            86

>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A

Probab=99.39  E-value=8.7e-13  Score=109.82  Aligned_cols=72  Identities=15%  Similarity=0.136  Sum_probs=64.5

Q ss_pred             eeEEEEEeC---CEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCC-CCCCEEEEeec
Q 018493           55 TIRVRVKYG---SIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGV-KDKSKLVLVED  126 (355)
Q Consensus        55 ~I~V~VK~g---g~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GI-KdgSkImLv~~  126 (355)
                      .+.|+|+.-   +..+.++|.+++||++||++|++..|+|+++|||+|+|+.++|+.+|.+||| ++|++|+|+--
T Consensus        24 ~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~   99 (105)
T 4dbg_A           24 RLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLL   99 (105)
T ss_dssp             EEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEEC
T ss_pred             EEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEE
Confidence            366666652   3788999999999999999999999999999999999999999999999999 59999999864

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}

Probab=99.37  E-value=6.6e-13  Score=120.57  Aligned_cols=72  Identities=19%  Similarity=0.261  Sum_probs=68.0

Q ss_pred             eeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493           55 TIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED  126 (355)
Q Consensus        55 ~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~  126 (355)
                      .|.|+|++ .+.++.|+|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+..
T Consensus       105 eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~Lvlr  177 (189)
T 3q3f_A          105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR  177 (189)
T ss_dssp             CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCC
T ss_pred             ceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEE
Confidence            48999997 5788999999999999999999999999999999999999999999999999999999999853

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}

Probab=99.36  E-value=1.7e-12  Score=113.80  Aligned_cols=71  Identities=20%  Similarity=0.308  Sum_probs=65.3

Q ss_pred             eeEEEEE-eCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493           55 TIRVRVK-YGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        55 ~I~V~VK-~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~  125 (355)
                      .+.|.|+ ..++++.+.|++++||.+||++|+..+|+|+++|+|+|+|+.++|+.+|.+|||++|++|+|+.
T Consensus        96 g~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~  167 (172)
T 3u30_A           96 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL  167 (172)
T ss_dssp             CEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC
T ss_pred             cccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEE
Confidence            3556666 4678899999999999999999999999999999999999999999999999999999999985

>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.31  E-value=4.1e-12  Score=104.60  Aligned_cols=72  Identities=15%  Similarity=0.216  Sum_probs=63.7

Q ss_pred             eEEEEEeCCEEEEEEEc-CCCCHHHHHHHHhcccCCCccCcEEeccCc-----------c----cCCchhhhhcCCCCCC
Q 018493           56 IRVRVKYGSIYHEIHIN-SQATFGELKKLLTGPTGLHHEDQKLIYKDK-----------E----RDSKAFLDVVGVKDKS  119 (355)
Q Consensus        56 I~V~VK~gg~~~~V~V~-~~sTVgdLK~~I~e~TGVppe~QKLIykGK-----------~----ldD~~tLs~~GIKdgS  119 (355)
                      |.|+|+.....+.|+|+ +++||.+||++|++.+|||+++|+|+|.|+           .    ++|+.+|.+|||++|+
T Consensus         8 M~irvrs~~G~~~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G~   87 (107)
T 1wf9_A            8 TMLRVRSRDGLERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHGS   87 (107)
T ss_dssp             EEEEEECSSCEEEEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTTC
T ss_pred             EEEEEECCCCCEEEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCCC
Confidence            67888875445578999 999999999999999999999999999998           4    5899999999999999


Q ss_pred             EEEEeecC
Q 018493          120 KLVLVEDP  127 (355)
Q Consensus       120 kImLv~~p  127 (355)
                      +|+|+...
T Consensus        88 ~L~l~~~~   95 (107)
T 1wf9_A           88 MVYLAYEG   95 (107)
T ss_dssp             EEECCCSS
T ss_pred             EEEEEeCC
Confidence            99998653

>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f

Probab=99.31  E-value=1.7e-13  Score=120.36  Aligned_cols=71  Identities=21%  Similarity=0.318  Sum_probs=0.0

Q ss_pred             eEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493           56 IRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED  126 (355)
Q Consensus        56 I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~  126 (355)
                      |.|.|++ +|..+.|+|++++||++||++|++.+|||+++|+|+|+|+.|+|+.+|++|||++|++|+|+..
T Consensus         1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlr   72 (152)
T 3u5c_f            1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR   72 (152)
T ss_dssp             ------------------------------------------------------------------------
T ss_pred             CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEee
Confidence            3567776 4678899999999999999999999999999999999999999999999999999999999853

>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=4.6e-12  Score=101.36  Aligned_cols=71  Identities=18%  Similarity=0.170  Sum_probs=61.8

Q ss_pred             CCeeEEEEEeC--CEE-EEE-EEcCCCCHHHHHHHHhc-ccCCCccCcEEecc--CcccCCchhhhhcCCCCCCEEEE
Q 018493           53 PPTIRVRVKYG--SIY-HEI-HINSQATFGELKKLLTG-PTGLHHEDQKLIYK--DKERDSKAFLDVVGVKDKSKLVL  123 (355)
Q Consensus        53 ~~~I~V~VK~g--g~~-~~V-~V~~~sTVgdLK~~I~e-~TGVppe~QKLIyk--GK~ldD~~tLs~~GIKdgSkImL  123 (355)
                      ..+|.|+|+..  ... +.| +|++++||++||+.|++ ..|++|++|+|+|.  ||.|+|+.+|++|||++|++|++
T Consensus         8 ~~~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~   85 (88)
T 2dzj_A            8 MKHYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF   85 (88)
T ss_dssp             CCCEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred             eEEEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence            34588888863  332 468 99999999999999999 58999999999965  99999999999999999999887

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=99.30  E-value=1.9e-12  Score=128.05  Aligned_cols=72  Identities=18%  Similarity=0.254  Sum_probs=65.7

Q ss_pred             CCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhc---ccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEe
Q 018493           53 PPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTG---PTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLV  124 (355)
Q Consensus        53 ~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e---~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv  124 (355)
                      ..+|+|+||+ .+++|.|+|++++||++||++|+.   ++|||+++|||||+||.|+|+.+|++|||++|++|++|
T Consensus         5 ~~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~l   80 (368)
T 1oqy_A            5 SSAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVM   80 (368)
T ss_dssp             -CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEE
T ss_pred             CceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEE
Confidence            3568899998 478999999999999999999999   78999999999999999999999999999999999444

>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.30  E-value=4.1e-12  Score=108.91  Aligned_cols=74  Identities=12%  Similarity=0.119  Sum_probs=63.2

Q ss_pred             CCeeEEEEEe--CCEEEEEEEcCCCCHHHHHHHH-----hcccCCCc--cCcEEeccCcccCCchhhhhcCCCCC-----
Q 018493           53 PPTIRVRVKY--GSIYHEIHINSQATFGELKKLL-----TGPTGLHH--EDQKLIYKDKERDSKAFLDVVGVKDK-----  118 (355)
Q Consensus        53 ~~~I~V~VK~--gg~~~~V~V~~~sTVgdLK~~I-----~e~TGVpp--e~QKLIykGK~ldD~~tLs~~GIKdg-----  118 (355)
                      ...+.|+|+.  |....++++++++||.+||++|     ++..|+|+  ++|||||.||.|+|+.+|++|+|++|     
T Consensus        14 ~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~   93 (126)
T 1se9_A           14 HNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGA   93 (126)
T ss_dssp             CCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTC
T ss_pred             cccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCC
Confidence            3556777765  4455589999999999999999     67889997  89999999999999999999999999     


Q ss_pred             -CEEEEeec
Q 018493          119 -SKLVLVED  126 (355)
Q Consensus       119 -SkImLv~~  126 (355)
                       ++|+|+-.
T Consensus        94 v~tmhlVlr  102 (126)
T 1se9_A           94 VTTMHVIIQ  102 (126)
T ss_dssp             CEEEEEEEC
T ss_pred             cEEEEEEec
Confidence             56888754

>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}

Probab=99.29  E-value=3.5e-12  Score=100.68  Aligned_cols=72  Identities=22%  Similarity=0.288  Sum_probs=62.6

Q ss_pred             eEEEEEeCCEEEEEE-EcCCCCHHHHHHHHhcccCCCccCcEEeccC--cccC---CchhhhhcCCCCCCEEEEeecC
Q 018493           56 IRVRVKYGSIYHEIH-INSQATFGELKKLLTGPTGLHHEDQKLIYKD--KERD---SKAFLDVVGVKDKSKLVLVEDP  127 (355)
Q Consensus        56 I~V~VK~gg~~~~V~-V~~~sTVgdLK~~I~e~TGVppe~QKLIykG--K~ld---D~~tLs~~GIKdgSkImLv~~p  127 (355)
                      |+|+|++.+..+.|. |++++||++||+.|++.+||++++|+|+|.+  |.++   |+.+|++|||++|++|+|..+.
T Consensus         1 m~i~vr~~~G~~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~~   78 (86)
T 2kzr_A            1 WRVRCKAKGGTHLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEEDQ   78 (86)
T ss_dssp             CCEEEEETTEEEEECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCCS
T ss_pred             CEEEEEcCCCCEEeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeCC
Confidence            467888865566788 9999999999999999999999999999864  7763   7889999999999999998753

>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*

Probab=99.28  E-value=6.5e-12  Score=121.67  Aligned_cols=73  Identities=19%  Similarity=0.296  Sum_probs=68.7

Q ss_pred             CCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493           53 PPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        53 ~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~  125 (355)
                      ...|.|.|++ .++.+.|+|++++||++||++|++.+|||+++|||+|+|+.|+|+.+|++|||++|++|+|+.
T Consensus       231 ~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~Lvl  304 (307)
T 3ai5_A          231 TGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL  304 (307)
T ss_dssp             CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC
T ss_pred             CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEE
Confidence            4568899998 568899999999999999999999999999999999999999999999999999999999985

>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.14  E-value=2.4e-10  Score=91.99  Aligned_cols=76  Identities=14%  Similarity=0.142  Sum_probs=65.5

Q ss_pred             CCCCeeEEEEEe----CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCc------c-c-CCchhhhhcCCCCC
Q 018493           51 APPPTIRVRVKY----GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDK------E-R-DSKAFLDVVGVKDK  118 (355)
Q Consensus        51 ~~~~~I~V~VK~----gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK------~-l-dD~~tLs~~GIKdg  118 (355)
                      +....|+|.|++    .+..+++.|+.+.||++||.+|+..||+|+..|||+|.+.      . + +|..+|..|||.+|
T Consensus         5 ~~~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G   84 (97)
T 1wjn_A            5 SSGQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENG   84 (97)
T ss_dssp             SSSCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTT
T ss_pred             ccCccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCC
Confidence            445678888875    3568889999999999999999999999999999998742      2 3 78899999999999


Q ss_pred             CEEEEeec
Q 018493          119 SKLVLVED  126 (355)
Q Consensus       119 SkImLv~~  126 (355)
                      ++|+|...
T Consensus        85 ~~I~V~d~   92 (97)
T 1wjn_A           85 DCLLVRWS   92 (97)
T ss_dssp             CEEEEECC
T ss_pred             CEEEEEec
Confidence            99999863

>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=98.98  E-value=1e-09  Score=89.00  Aligned_cols=74  Identities=11%  Similarity=0.181  Sum_probs=67.9

Q ss_pred             CCCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493           52 PPPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        52 ~~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~  125 (355)
                      ....|+|+|+. .+..+.+.|.+++++..|++.++++.|+++++++|+|.|+.++++.|+.+|++.+|++|.|+.
T Consensus         4 ~~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~   78 (94)
T 2io1_B            4 MNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ   78 (94)
T ss_dssp             --CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEE
T ss_pred             CCCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEE
Confidence            35679999996 567788999999999999999999999999999999999999999999999999999999985

>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A

Probab=98.97  E-value=2e-09  Score=84.28  Aligned_cols=75  Identities=13%  Similarity=0.202  Sum_probs=68.3

Q ss_pred             CCCCeeEEEEEe-CC-EEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493           51 APPPTIRVRVKY-GS-IYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        51 ~~~~~I~V~VK~-gg-~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~  125 (355)
                      .....|+|+|+. .+ ..+.+.|.+++++..|+...++..|+++++++|+|.|+.+.++.|+.+|++.+|+.|.+++
T Consensus         3 ~~~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~~   79 (79)
T 3a4r_A            3 LGSQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVWG   79 (79)
T ss_dssp             TCCCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEEC
T ss_pred             CCCCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEeC
Confidence            345679999996 45 4788999999999999999999999999999999999999999999999999999999874

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9

Probab=98.93  E-value=1.1e-10  Score=106.27  Aligned_cols=64  Identities=14%  Similarity=0.144  Sum_probs=0.0

Q ss_pred             EEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493           57 RVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        57 ~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~  125 (355)
                      .|.|+. .+.++.|+|++++||.+||.+|++.+|||+++|+|||.|++|+|+.+|+     ++|+|+|+.
T Consensus         2 qI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvl   66 (189)
T 2xzm_9            2 QVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSL   66 (189)
T ss_dssp             ----------------------------------------------------------------------
T ss_pred             EEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEE
Confidence            466665 4678899999999999999999999999999999999999999999999     999999984

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1

Probab=98.89  E-value=3.4e-09  Score=85.49  Aligned_cols=74  Identities=11%  Similarity=0.193  Sum_probs=67.8

Q ss_pred             CCCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493           52 PPPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        52 ~~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~  125 (355)
                      +...|+|+|+. .+..+.+.|.+++++..|+...++..|++++.++|+|.|+.+.++.|+.+|++.+|+.|.++.
T Consensus         2 ~~~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~   76 (91)
T 2io0_B            2 ANDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ   76 (91)
T ss_dssp             --CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEE
T ss_pred             CCCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEE
Confidence            35679999996 567788999999999999999999999999999999999999999999999999999999985

>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B

Probab=98.89  E-value=3.5e-09  Score=81.19  Aligned_cols=69  Identities=12%  Similarity=0.206  Sum_probs=64.8

Q ss_pred             eEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEe
Q 018493           56 IRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLV  124 (355)
Q Consensus        56 I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv  124 (355)
                      |+|+|+. .|..+.+.|.+++++..|+...++..|++++.++|+|.|+.+.++.|..+||+.+|+.|.++
T Consensus         2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~   71 (72)
T 1wm3_A            2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF   71 (72)
T ss_dssp             EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence            7888885 56778899999999999999999999999999999999999999999999999999999885

>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A

Probab=98.80  E-value=1.2e-08  Score=82.30  Aligned_cols=74  Identities=11%  Similarity=0.187  Sum_probs=67.9

Q ss_pred             CCCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493           52 PPPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        52 ~~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~  125 (355)
                      ....|+|+|+. .+..+.+.|.+++++..|+..+++..|++++.++|+|.|+.+.++.|+.+|++.+|+.|.++.
T Consensus        14 ~~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~   88 (93)
T 2d07_B           14 NNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ   88 (93)
T ss_dssp             -CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEE
T ss_pred             CCCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEe
Confidence            35679999996 556788999999999999999999999999999999999999999999999999999999975

>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=98.78  E-value=1.5e-08  Score=83.82  Aligned_cols=74  Identities=11%  Similarity=0.187  Sum_probs=68.3

Q ss_pred             CCCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493           52 PPPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        52 ~~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~  125 (355)
                      ....|+|+|+. .+..+.+.|.+++++..|+..+++..|++++.++|+|.|+.+.++.|+.+|++.+|++|.|+.
T Consensus        21 ~~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~   95 (104)
T 1wz0_A           21 NNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ   95 (104)
T ss_dssp             CSCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECC
T ss_pred             CCCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEE
Confidence            34679999996 566788999999999999999999999999999999999999999999999999999999984

>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1

Probab=98.77  E-value=2e-08  Score=83.46  Aligned_cols=74  Identities=14%  Similarity=0.217  Sum_probs=68.6

Q ss_pred             CCCeeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493           52 PPPTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        52 ~~~~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~  125 (355)
                      ....|+|+|+..+..+.+.|..++++..|+..+++..|++++.++|+|.|+.+.++.|..+|++.+|++|.|+.
T Consensus        28 ~~~~I~IkV~~~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~  101 (106)
T 2eke_C           28 PETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR  101 (106)
T ss_dssp             CCSEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEE
T ss_pred             CCCeEEEEEecCCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEe
Confidence            45679999998667788999999999999999999999999999999999999999999999999999999875

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}

Probab=98.73  E-value=2.7e-08  Score=83.11  Aligned_cols=75  Identities=12%  Similarity=0.219  Sum_probs=68.8

Q ss_pred             CCCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493           52 PPPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED  126 (355)
Q Consensus        52 ~~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~  126 (355)
                      ....|+|+|+. .+..+.+.|.+++++..|+..+++..|++++.++|+|.|+.+.++.|+.+|++.+|++|.|+..
T Consensus        23 ~~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~   98 (110)
T 2k8h_A           23 ETALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVE   98 (110)
T ss_dssp             CCCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECC
T ss_pred             CCCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEc
Confidence            44679999996 4567889999999999999999999999999999999999999999999999999999999853

>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}

Probab=98.40  E-value=1.8e-07  Score=73.60  Aligned_cols=69  Identities=17%  Similarity=0.207  Sum_probs=57.2

Q ss_pred             eEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcc-----cCCchhhhhcCCCCCCEEEEe
Q 018493           56 IRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKE-----RDSKAFLDVVGVKDKSKLVLV  124 (355)
Q Consensus        56 I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~-----ldD~~tLs~~GIKdgSkImLv  124 (355)
                      +.|+|+.....+-|++++++||++|++.|++.++++++.|.|.+.-..     ..++.+|+++||++|+.|+|.
T Consensus         5 m~lRvrs~~G~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~   78 (80)
T 2pjh_A            5 IIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF   78 (80)
T ss_dssp             CCCEEECSSEEEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred             EEEEEECCCCCEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence            667777766678888999999999999999999999998887654332     347789999999999999874

>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1

Probab=98.33  E-value=1.2e-06  Score=73.86  Aligned_cols=91  Identities=12%  Similarity=0.204  Sum_probs=66.9

Q ss_pred             CceEEEeecCCC-CC-CCCCCCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhh
Q 018493           35 GGMLVQKRNPDS-DR-TSAPPPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLD  111 (355)
Q Consensus        35 ggmlvqkR~~~~-~~-~~~~~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs  111 (355)
                      |-|..+.-..+. +. .......|+|+|+. .+....+.|..++++..|+...++..|++++.++|+|.|+.+.++.|..
T Consensus        18 ~~~~~~~~~~~~~~~~~k~~~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~   97 (115)
T 3kyd_D           18 SHMSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPK   97 (115)
T ss_dssp             ---------------------CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTT
T ss_pred             CccccccccCccccccCCCCCCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHH
Confidence            445555544322 11 12335679999996 4566788999999999999999999999999999999999999999999


Q ss_pred             hcCCCCCCEEEEee
Q 018493          112 VVGVKDKSKLVLVE  125 (355)
Q Consensus       112 ~~GIKdgSkImLv~  125 (355)
                      ++++.+|++|.++.
T Consensus        98 dL~MEDgD~IdV~~  111 (115)
T 3kyd_D           98 ELGMEEEDVIEVYQ  111 (115)
T ss_dssp             TTTCCTTCEEEEEE
T ss_pred             HcCCCCCCEEEEEe
Confidence            99999999999875

>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}

Probab=98.26  E-value=1.4e-06  Score=79.71  Aligned_cols=74  Identities=14%  Similarity=0.217  Sum_probs=69.2

Q ss_pred             CCCeeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493           52 PPPTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        52 ~~~~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~  125 (355)
                      +...|+|+|+..+..+.+.|..++++..|+...+++.|++++++||+|.|+.+.++.|..++|+.+|++|.++.
T Consensus        26 ~~~~I~LkV~~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~   99 (200)
T 3pge_A           26 PETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR   99 (200)
T ss_dssp             CCCCEEEEEECSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEE
T ss_pred             CCCeEEEEEecCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEe
Confidence            35679999987778889999999999999999999999999999999999999999999999999999999883

>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}

Probab=98.19  E-value=2.2e-06  Score=78.50  Aligned_cols=73  Identities=14%  Similarity=0.188  Sum_probs=68.8

Q ss_pred             CCeeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493           53 PPTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        53 ~~~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~  125 (355)
                      ...|+|+|+..+..+.+.|..++++..|++..++..|+++..++|+|.|+.+.++.|..++++.||++|.++.
T Consensus        55 ~e~InLKVk~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~l  127 (207)
T 3tix_A           55 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHR  127 (207)
T ss_dssp             CCEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECC
T ss_pred             CCcEEEEEecCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEE
Confidence            4569999987778889999999999999999999999999999999999999999999999999999999984

>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}

Probab=98.16  E-value=3.6e-06  Score=68.76  Aligned_cols=70  Identities=20%  Similarity=0.233  Sum_probs=56.5

Q ss_pred             eEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcc--cCCchhhhhcCC-CCCCEEEEee
Q 018493           56 IRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKE--RDSKAFLDVVGV-KDKSKLVLVE  125 (355)
Q Consensus        56 I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~--ldD~~tLs~~GI-KdgSkImLv~  125 (355)
                      |.|.-...+..|.|.|.++.|+..||++|++.||||+.+|+|||.|+.  ++.+.+-..|-- .....|+|+.
T Consensus        15 vHVf~~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~s   87 (94)
T 4efo_A           15 IHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVS   87 (94)
T ss_dssp             EEEEETTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEEE
T ss_pred             EEEEEcccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEEe
Confidence            444444578899999999999999999999999999999999999986  677777666644 3345677765

>2d9d_A BAG family molecular chaperone regulator 5; triple helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.90  E-value=2.3e-05  Score=62.59  Aligned_cols=69  Identities=14%  Similarity=0.194  Sum_probs=55.0

Q ss_pred             hHHHHHHHHHHhhhhHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHhccCCCCCh--hhHHHHHHHHHHHHHHHHHHHH
Q 018493          149 SISEISLEVDRLAGQVSALESIITKGGKVAEKDVLNLIELLMNQLLKLDGIMADG--DVKLQRKMQVRRVQKYVETLDM  225 (355)
Q Consensus       149 aIs~V~~eVDkLa~ev~~LE~~I~~g~Kv~eke~~~LsE~LMq~LLKLD~IeaeG--daR~qRK~~VkrVQ~~Le~LD~  225 (355)
                      .|.+|+..+-.|..++..+.     ++   .+.|..+.|.|-+.++.||.|+++|  ++|..||.+|++||.+..-||-
T Consensus        11 ~Ie~v~~r~r~l~~ell~~~-----~~---s~~yl~~k~eLq~Li~~LDev~~~~NpcIReaRRrAV~EvQ~lit~lDl   81 (89)
T 2d9d_A           11 KIEKVLKRMREIKNELLQAQ-----NP---SELYLSSKTELQGLIGQLDEVSLEKNPCIREARRRAVIEVQTLITYIDL   81 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHCS-----CT---TTHHHHHHHHHHHHHHHHGGGCSCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhc-----Cc---hHHHhhhHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555555554444331     11   7889999999999999999999998  7999999999999999999993

>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}

Probab=97.72  E-value=4.5e-06  Score=77.40  Aligned_cols=74  Identities=14%  Similarity=0.217  Sum_probs=0.0

Q ss_pred             CCCeeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493           52 PPPTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        52 ~~~~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~  125 (355)
                      +...|+|+|...+....+.|..++.+..|++..+++.|++++.+|++|.|+.+.++.|..++++.||++|.++.
T Consensus        18 p~e~InLKV~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~l   91 (227)
T 3v7o_A           18 PETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR   91 (227)
T ss_dssp             --------------------------------------------------------------------------
T ss_pred             CCCeEEEEEeCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEe
Confidence            34568888866667788899999999999999999999999999999999999999999999999999999874

>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}

Probab=97.71  E-value=0.00014  Score=59.50  Aligned_cols=74  Identities=9%  Similarity=0.194  Sum_probs=66.5

Q ss_pred             CCCeeEEEEEe-CC-EEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493           52 PPPTIRVRVKY-GS-IYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        52 ~~~~I~V~VK~-gg-~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~  125 (355)
                      ....|+|+|+. .+ ....+.|..++++.-|....++..|++++..+++|.|..+.++.|..++++.+|+.|-+++
T Consensus        22 ~~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~~   97 (97)
T 2jxx_A           22 TSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVWG   97 (97)
T ss_dssp             SCSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEEC
T ss_pred             CCCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEeC
Confidence            45679999986 34 4678899999999999999999999999999999999999999999999999999998763

>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}

Probab=97.57  E-value=0.00011  Score=58.31  Aligned_cols=70  Identities=11%  Similarity=0.228  Sum_probs=60.8

Q ss_pred             eeEEEEE---eCCEEEEEEEcCCCCHHHHHHHHhcccCCCc-----cCcEEeccCcccCCchhhhhcCCCCCCEEEEe
Q 018493           55 TIRVRVK---YGSIYHEIHINSQATFGELKKLLTGPTGLHH-----EDQKLIYKDKERDSKAFLDVVGVKDKSKLVLV  124 (355)
Q Consensus        55 ~I~V~VK---~gg~~~~V~V~~~sTVgdLK~~I~e~TGVpp-----e~QKLIykGK~ldD~~tLs~~GIKdgSkImLv  124 (355)
                      -|.|++-   |.++.|++.||...||..|.+.|.+..+++.     -..|+.-||..+.++..|.+|||++||.|-++
T Consensus         4 yI~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Leil   81 (81)
T 2bps_A            4 YIDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEIL   81 (81)
T ss_dssp             EEEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEEC
T ss_pred             EEEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEEC
Confidence            3566666   5889999999999999999999999999885     24678899999999999999999999998753

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=97.46  E-value=0.00022  Score=64.93  Aligned_cols=75  Identities=13%  Similarity=0.226  Sum_probs=69.0

Q ss_pred             CCCeeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493           52 PPPTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED  126 (355)
Q Consensus        52 ~~~~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~  126 (355)
                      +...|+|+|+..+..+.+.|..++++.-|+...++..|+++++++|+|.|+.+.++.+-.++.+.+++.|-+...
T Consensus        18 ~~~~i~ikv~~~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~e   92 (209)
T 3uf8_A           18 PETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRE   92 (209)
T ss_dssp             CCSEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECS
T ss_pred             CCCcEEEEEEcCCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhcc
Confidence            456799999976677789999999999999999999999999999999999999999999999999999988853

>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}

Probab=97.44  E-value=0.00052  Score=56.14  Aligned_cols=74  Identities=8%  Similarity=0.104  Sum_probs=68.2

Q ss_pred             CCeeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493           53 PPTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED  126 (355)
Q Consensus        53 ~~~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~  126 (355)
                      ...|+|+|+.++....+.|-.++.+.-|.+..+++.|+++...+++|.|..+.++.|-.++|+.+|+.|-++.-
T Consensus        19 ~~~IniKV~~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~   92 (95)
T 2l76_A           19 PRLFPLKIRCRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVVL   92 (95)
T ss_dssp             CCCEEEEEECSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEEC
T ss_pred             CCeEEEEEEcCCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEe
Confidence            34599999988888889999999999999999999999999999999999999999999999999999987753

>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*

Probab=97.40  E-value=0.00058  Score=54.26  Aligned_cols=72  Identities=14%  Similarity=0.144  Sum_probs=63.4

Q ss_pred             CeeEEEEEeC-CEEEEEEEcCCCCHHHHHHHHhcccCCCcc-CcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493           54 PTIRVRVKYG-SIYHEIHINSQATFGELKKLLTGPTGLHHE-DQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        54 ~~I~V~VK~g-g~~~~V~V~~~sTVgdLK~~I~e~TGVppe-~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~  125 (355)
                      ..|++..... +.-..+.|+.+++|..|-+.-+.+-||+++ ..+|+|-|..++.+.++.+|++.||+.|-+|-
T Consensus         8 ~~~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL   81 (82)
T 3goe_A            8 KLITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL   81 (82)
T ss_dssp             CEEEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred             HHHHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence            3466666653 355778899999999999999999999999 99999999999999999999999999998764

>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}

Probab=97.37  E-value=2.7e-05  Score=77.01  Aligned_cols=75  Identities=13%  Similarity=0.226  Sum_probs=0.0

Q ss_pred             CCCeeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493           52 PPPTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED  126 (355)
Q Consensus        52 ~~~~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~  126 (355)
                      +...|+|+|+..+....+.|..++++..|++..++..|++++.++++|.|+.+.++.|..++|+.+|+.|.++..
T Consensus        18 ~~~~I~LKV~~~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~   92 (360)
T 3ix6_A           18 PETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRE   92 (360)
T ss_dssp             ---------------------------------------------------------------------------
T ss_pred             CCCeEEEEEecCCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhc
Confidence            456799999887777788999999999999999999999999999999999999999999999999999999854

>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A

Probab=97.17  E-value=5.8e-05  Score=74.00  Aligned_cols=73  Identities=12%  Similarity=0.185  Sum_probs=0.0

Q ss_pred             CCeeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493           53 PPTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        53 ~~~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~  125 (355)
                      ...|+|+|+..+....+.|..++++..|++..+++.|+++..++++|.|+.+.++.|-.++|+.+|+.|.++.
T Consensus        28 ~~~i~lkv~~~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~  100 (389)
T 4da1_A           28 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHR  100 (389)
T ss_dssp             -------------------------------------------------------------------------
T ss_pred             CCcEEEEEecCCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeee
Confidence            4568999988767778899999999999999999999999999999999999999999999999999998884

>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2

Probab=97.11  E-value=0.00087  Score=54.30  Aligned_cols=73  Identities=12%  Similarity=0.118  Sum_probs=64.8

Q ss_pred             EEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeecCCc
Q 018493           57 RVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVEDPIS  129 (355)
Q Consensus        57 ~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~p~s  129 (355)
                      .|.|-+ ++.++.|.|.+.+++.++-+..+++.|+.+++-.|.|++|.+|-+.+++-.||-+|++|-|+....+
T Consensus        11 ~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s~s   84 (90)
T 2al3_A           11 AVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVSRS   84 (90)
T ss_dssp             CEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSSSC
T ss_pred             EEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEccCC
Confidence            445553 5678899999999999999999999999999999999999999999999999999999999975443

>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}

Probab=96.78  E-value=0.0018  Score=55.48  Aligned_cols=68  Identities=18%  Similarity=0.264  Sum_probs=54.7

Q ss_pred             EEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCcc-------------------------------------CcEEec
Q 018493           58 VRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHE-------------------------------------DQKLIY   99 (355)
Q Consensus        58 V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe-------------------------------------~QKLIy   99 (355)
                      |+|+- ++....+.|+.+.||++++..|+...||+..                                     .|||-.
T Consensus        14 LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~~   93 (128)
T 2kc2_A           14 LKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLHT   93 (128)
T ss_dssp             EEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCCC
T ss_pred             EEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhcc
Confidence            45553 5677899999999999999999999999954                                     455532


Q ss_pred             --cCcccCCchhhhhcCCCCCCEEEEee
Q 018493          100 --KDKERDSKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus       100 --kGK~ldD~~tLs~~GIKdgSkImLv~  125 (355)
                        .+..+|++.+|.++||.++++|+|-.
T Consensus        94 dd~~~WLD~srtL~EQGI~e~~tllLRr  121 (128)
T 2kc2_A           94 DDELNWLDHGRTLREQGVEEHETLLLRR  121 (128)
T ss_dssp             SSSEEEECSSSCHHHHTCCTTSEEEEEE
T ss_pred             cCCCCcccCCCcHHHcCCCCCCEEEEEE
Confidence              23458999999999999999988743

>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A

Probab=96.75  E-value=0.0056  Score=47.70  Aligned_cols=73  Identities=15%  Similarity=0.263  Sum_probs=59.1

Q ss_pred             CCCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEe--ccCccc---CCchhhhhcCCCCCCEEEEee
Q 018493           52 PPPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLI--YKDKER---DSKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        52 ~~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLI--ykGK~l---dD~~tLs~~GIKdgSkImLv~  125 (355)
                      ..+..+|.|+. +|....-.++.++||.+|..-|.. .+.++...+|+  |=.|.+   |.+.+|.++|+.+++.|+|-.
T Consensus         4 ~~~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~   82 (84)
T 3qx1_A            4 MEPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA   82 (84)
T ss_dssp             CCCEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEE
T ss_pred             CCCeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEe
Confidence            45777888886 456667789999999999999988 67788888998  556765   567899999999999888754

>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2

Probab=96.59  E-value=0.011  Score=49.90  Aligned_cols=96  Identities=17%  Similarity=0.222  Sum_probs=69.9

Q ss_pred             cccccceeecCCceEEEeecCCCCCCCCCCCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEe--cc
Q 018493           24 EAAAHEWELRPGGMLVQKRNPDSDRTSAPPPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLI--YK  100 (355)
Q Consensus        24 ~~~~~~we~rpggmlvqkR~~~~~~~~~~~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLI--yk  100 (355)
                      ......|+..||--.=  .....   ....+.++|.|+. .|.+..-.++.++||.+|..-|... |.++....|+  |=
T Consensus        17 ~~~~~~~~~~~~~~~~--~~~~~---d~~~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fP   90 (124)
T 1wj4_A           17 AVDSEILEMPPEKADG--VVEGI---DVNGPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFP   90 (124)
T ss_dssp             CCCCCSCSCCCCCCCC--CCCCC---CCSSCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSS
T ss_pred             ccChhhhhcCCCCCCC--ccccc---CCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCC
Confidence            3445789988772210  00000   1235678888886 4667788899999999999999887 7777888887  56


Q ss_pred             Cccc---CCchhhhhcCCCCCCEEEEee
Q 018493          101 DKER---DSKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus       101 GK~l---dD~~tLs~~GIKdgSkImLv~  125 (355)
                      .|.+   +.+.+|.++|+.+...|+|..
T Consensus        91 rk~l~~~d~~~TL~e~gL~psa~Liv~~  118 (124)
T 1wj4_A           91 RRKLSHLDYDITLQEAGLCPQETVFVQE  118 (124)
T ss_dssp             CCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred             CcCCccCCCCCCHHHCCCCCceEEEEEE
Confidence            7776   457899999999988888764

>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A

Probab=95.31  E-value=0.088  Score=43.16  Aligned_cols=73  Identities=15%  Similarity=0.179  Sum_probs=58.9

Q ss_pred             CCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEe--ccCcccC---CchhhhhcCCCCCCEEEEee
Q 018493           53 PPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLI--YKDKERD---SKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        53 ~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLI--ykGK~ld---D~~tLs~~GIKdgSkImLv~  125 (355)
                      .+..+|.|+. +|.+..-.++.++||.+|++-|....+.+.....|+  |--|.+.   .+.+|.++|+.+...|++..
T Consensus        11 ~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~   89 (109)
T 2dzk_A           11 STIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLP   89 (109)
T ss_dssp             SCCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEEC
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEE
Confidence            3457777775 456777889999999999999999888877788887  5566654   47899999999998888764

>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.83  E-value=0.079  Score=42.69  Aligned_cols=74  Identities=18%  Similarity=0.337  Sum_probs=63.2

Q ss_pred             CCCCCCeeEEEEEeC-CEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEe--ccCc-ccCCchhhhhcCCCCCCEEEEe
Q 018493           49 TSAPPPTIRVRVKYG-SIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLI--YKDK-ERDSKAFLDVVGVKDKSKLVLV  124 (355)
Q Consensus        49 ~~~~~~~I~V~VK~g-g~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLI--ykGK-~ldD~~tLs~~GIKdgSkImLv  124 (355)
                      +.++..++++.|-+. .++.-+-|++..++.+|--.|+++..+.|+.--|+  ++-. .||-+..|.+|||++   |+.+
T Consensus         4 ~~~PE~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE---Lya~   80 (91)
T 2daj_A            4 GSSGEKTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE---LYAM   80 (91)
T ss_dssp             CSCCCSCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE---EEEE
T ss_pred             CCCCccEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh---hhee
Confidence            357788999999985 57888999999999999999999999999999888  3333 499999999999997   6665


Q ss_pred             e
Q 018493          125 E  125 (355)
Q Consensus       125 ~  125 (355)
                      .
T Consensus        81 d   81 (91)
T 2daj_A           81 D   81 (91)
T ss_dssp             E
T ss_pred             c
Confidence            4

>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=93.98  E-value=0.088  Score=41.87  Aligned_cols=49  Identities=14%  Similarity=0.311  Sum_probs=43.9

Q ss_pred             CCeeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCc
Q 018493           53 PPTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDK  102 (355)
Q Consensus        53 ~~~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK  102 (355)
                      ...++|+|.+. -++-|.|+...++.+|+.+|+++.+++++..+|-|+..
T Consensus         3 ~~~~~VKV~~~-~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~   51 (83)
T 1oey_A            3 HMAYTLKVHYK-YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPR   51 (83)
T ss_dssp             SSCEEEEEESS-SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCT
T ss_pred             CCcEEEEEEEE-EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCC
Confidence            34478888888 67889999999999999999999999999999999875

>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A

Probab=93.78  E-value=0.24  Score=45.03  Aligned_cols=69  Identities=12%  Similarity=0.161  Sum_probs=53.3

Q ss_pred             eEEEEEeCCE---EEEEEEcCCCCHHHHHHHHhcccCCCcc-CcEEe--c-cCcc--cCC-chhhhhcCCCCCCEEEEe
Q 018493           56 IRVRVKYGSI---YHEIHINSQATFGELKKLLTGPTGLHHE-DQKLI--Y-KDKE--RDS-KAFLDVVGVKDKSKLVLV  124 (355)
Q Consensus        56 I~V~VK~gg~---~~~V~V~~~sTVgdLK~~I~e~TGVppe-~QKLI--y-kGK~--ldD-~~tLs~~GIKdgSkImLv  124 (355)
                      +.+++...+.   .+.+.++..+||.+|++.+...++|+++ ..||-  | .++.  ++| +.+|.+++|.+|..|+|=
T Consensus       128 ~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE  206 (217)
T 4a3p_A          128 TELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIE  206 (217)
T ss_dssp             EEEEEEETTEEEEEEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEE
T ss_pred             cEEEEEecCCCCcceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEE
Confidence            4555555442   3567889999999999999999999997 68875  3 3333  555 579999999999999874

>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A

Probab=93.22  E-value=0.22  Score=39.98  Aligned_cols=50  Identities=16%  Similarity=0.218  Sum_probs=43.1

Q ss_pred             CCCeeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccC-cEEeccC
Q 018493           52 PPPTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHED-QKLIYKD  101 (355)
Q Consensus        52 ~~~~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~-QKLIykG  101 (355)
                      ++..|+|++.+.|..+-+.++++.++.+|.++|.+..+++.++ ..|-|+.
T Consensus         3 ~~~~vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~D   53 (89)
T 1vd2_A            3 LGSQVRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWID   53 (89)
T ss_dssp             CSSCEEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECC
T ss_pred             CCCeEEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEEC
Confidence            4567999999999999999999999999999999999998655 5666764

>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A

Probab=92.87  E-value=0.41  Score=46.08  Aligned_cols=70  Identities=9%  Similarity=0.138  Sum_probs=57.0

Q ss_pred             eeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccC----CCccCcEEec------cCcccCCchhhhhcCCCCCCEEEEe
Q 018493           55 TIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTG----LHHEDQKLIY------KDKERDSKAFLDVVGVKDKSKLVLV  124 (355)
Q Consensus        55 ~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TG----Vppe~QKLIy------kGK~ldD~~tLs~~GIKdgSkImLv  124 (355)
                      .+.++|...+.+..+.+++++||.|....|.++..    .+.++--|.-      +|+-+++..+|+.||+++|+.|..-
T Consensus         3 ~~~~~~~~~~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~   82 (371)
T 3ivf_A            3 ALSLKISIGNVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYR   82 (371)
T ss_dssp             CEEEEEEETTEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEE
T ss_pred             cEEEEEEecceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeecc
Confidence            35666666688899999999999999999988764    3577778876      4555888999999999999988654

>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2

Probab=92.75  E-value=0.41  Score=39.04  Aligned_cols=72  Identities=13%  Similarity=0.141  Sum_probs=56.5

Q ss_pred             CCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEe--ccCccc--CCchhhhhcCCCCCCEEEEee
Q 018493           53 PPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLI--YKDKER--DSKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        53 ~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLI--ykGK~l--dD~~tLs~~GIKdgSkImLv~  125 (355)
                      .+.++|.|+. .|.++.-.+..++||.+|..-|... +..+...+|+  |=.|.+  +.+.+|.++||.+...|+|-.
T Consensus        21 ~~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~   97 (109)
T 2cr5_A           21 EEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE   97 (109)
T ss_dssp             SSEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEe
Confidence            4578888886 4566777899999999999999864 5566778887  556665  467899999999988887754

>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}

Probab=92.51  E-value=0.43  Score=43.75  Aligned_cols=70  Identities=13%  Similarity=0.137  Sum_probs=53.0

Q ss_pred             eEEEEEeCCE---EEEEEEcCCCCHHHHHHHHhcccCCCcc-CcEEec-c-C-cc--cCC-chhhhhcCCCCCCEEEEee
Q 018493           56 IRVRVKYGSI---YHEIHINSQATFGELKKLLTGPTGLHHE-DQKLIY-K-D-KE--RDS-KAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        56 I~V~VK~gg~---~~~V~V~~~sTVgdLK~~I~e~TGVppe-~QKLIy-k-G-K~--ldD-~~tLs~~GIKdgSkImLv~  125 (355)
                      +.+++...+.   .+.+.++..+||.+|++.+...++|+++ ..||-. . . +.  ++| +.+|.+++|.+|..|+|=.
T Consensus       140 ~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~  219 (231)
T 3jyu_A          140 LELKLCENSDPTNVLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEP  219 (231)
T ss_dssp             EEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEE
T ss_pred             ceEEEEecCCCCceEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEE
Confidence            4555555443   3456779999999999999999999997 688863 2 2 22  554 6899999999999888743

>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A

Probab=91.59  E-value=0.47  Score=37.96  Aligned_cols=69  Identities=14%  Similarity=0.238  Sum_probs=51.8

Q ss_pred             CeeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEe-ccCc----ccCCchhhhhcCCCCCCEEEEee
Q 018493           54 PTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLI-YKDK----ERDSKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        54 ~~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLI-ykGK----~ldD~~tLs~~GIKdgSkImLv~  125 (355)
                      ..++|++-+.+..+-|-||.+-++.+|+.+|.....+  +...|+ |++-    .+.++..|+.. |..++||+|..
T Consensus        11 ~~~KVK~yy~DDIiAIrvP~di~~~~L~dKi~~RLk~--~~~~l~~ykde~~g~~i~sD~dl~~a-iqrn~KL~l~~   84 (85)
T 1ip9_A           11 KTTKIKFYYKDDIFALMLKGDTTYKELRSKIAPRIDT--DNFKLQTKLFDGSGEEIKTDSQVSNI-IQAKLKISVHD   84 (85)
T ss_dssp             CCEEEEECBTTCCEEEEECSCCCHHHHHHHHHHHHTS--SCEEEEECCSSSCCSCCCSHHHHHHH-HHTTCCEEEEE
T ss_pred             CceEEEEEecCcEEEEECCCCCCHHHHHHHHHHHhcc--cceEEEEecCCCCCCcccCHHHHHHH-HHhcCeeEEec
Confidence            5689999999999999999999999999999999998  455554 4432    34455555443 66677777653

>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2

Probab=91.30  E-value=1.4  Score=32.87  Aligned_cols=61  Identities=7%  Similarity=0.004  Sum_probs=46.9

Q ss_pred             eEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493           56 IRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        56 I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~  125 (355)
                      ++|+|-.......++++...|+.+|.+.+    +++++..-+.++|.....+.     -|++||+|-++.
T Consensus         5 m~i~vNg~~~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~   65 (70)
T 1ryj_A            5 MKFTVITDDGKKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIR   65 (70)
T ss_dssp             EEEEEEETTEEEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEE
T ss_pred             EEEEEeCccCceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEe
Confidence            56666666656677888889999999987    56677777778998865443     689999998874

>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A

Probab=91.12  E-value=0.38  Score=40.38  Aligned_cols=68  Identities=10%  Similarity=0.213  Sum_probs=50.3

Q ss_pred             CeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcc-cCCCccCcEEe--ccCcccC-CchhhhhcCCCCCCEE
Q 018493           54 PTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGP-TGLHHEDQKLI--YKDKERD-SKAFLDVVGVKDKSKL  121 (355)
Q Consensus        54 ~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~-TGVppe~QKLI--ykGK~ld-D~~tLs~~GIKdgSkI  121 (355)
                      +..+|.|+. +|.+..-.++.++||.+|++-|... .+.......|+  |-.|.++ ++.+|.++|+.+...|
T Consensus        51 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl  123 (127)
T 1s3s_G           51 PTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIV  123 (127)
T ss_dssp             CCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEE
T ss_pred             CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEE
Confidence            445555554 3456677899999999999999885 45556677887  5667764 5689999999985433

>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}

Probab=90.31  E-value=0.65  Score=35.53  Aligned_cols=59  Identities=12%  Similarity=0.289  Sum_probs=43.9

Q ss_pred             EEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493           57 RVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        57 ~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~  125 (355)
                      +|+|+- |.....++++..+|+.||-+.    .|++++.--++.+|+....+.      +.+|++|-++.
T Consensus         2 ~v~Vkl~g~~~~~~ev~~g~Tv~dLL~~----Lgl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv~   61 (74)
T 2l32_A            2 NVTVEVVGEETSEVAVDDDGTYADLVRA----VDLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVLR   61 (74)
T ss_dssp             EEEEECSSSSEEEEECSTTCSHHHHHHT----TCCCSSCCCEECCCCCCCTTS------SSCCCCEEECS
T ss_pred             EEEEEEeCccceeEEcCCCCcHHHHHHH----cCCCcceEEEEECCEECCHHH------CCCCCEEEEEE
Confidence            445552 555667899999999998655    899999987788898855444      34699998873

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=87.39  E-value=1.4  Score=41.89  Aligned_cols=71  Identities=20%  Similarity=0.201  Sum_probs=55.7

Q ss_pred             eEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCc-c-cCCchhhhhcCCCC-CCEEEEeec
Q 018493           56 IRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDK-E-RDSKAFLDVVGVKD-KSKLVLVED  126 (355)
Q Consensus        56 I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK-~-ldD~~tLs~~GIKd-gSkImLv~~  126 (355)
                      +.+........+.+.+.+..|+.+|++.++..||++++.|.|+|.|. . ++...+.+.|.-.. .+-|+|+..
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (396)
T 4eut_A          313 IHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVSR  386 (396)
T ss_dssp             EEEEETTTTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSSCCCCSSSCEEEEEC
T ss_pred             EEEEEeccceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccCCCCCCCCCeEEEec
Confidence            34444456788889999999999999999999999999999999994 4 67777777776533 356676654

>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1

Probab=85.83  E-value=4.3  Score=31.87  Aligned_cols=66  Identities=18%  Similarity=0.234  Sum_probs=45.2

Q ss_pred             eeEEEEEe--------CCEEEEEEEcCCCCHHHHHHHHhcccC-C----------CccCcEEeccCcccCCchhhhhcCC
Q 018493           55 TIRVRVKY--------GSIYHEIHINSQATFGELKKLLTGPTG-L----------HHEDQKLIYKDKERDSKAFLDVVGV  115 (355)
Q Consensus        55 ~I~V~VK~--------gg~~~~V~V~~~sTVgdLK~~I~e~TG-V----------ppe~QKLIykGK~ldD~~tLs~~GI  115 (355)
                      .++|+|++        |.....++++...||++|.+.|..... +          ......+..+|+..+.     ++-|
T Consensus         9 ~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~L   83 (98)
T 1vjk_A            9 SVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEEL   83 (98)
T ss_dssp             CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBC
T ss_pred             cEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCCC
Confidence            45677775        434567888888999999999876531 1          1133456667776542     5679


Q ss_pred             CCCCEEEEee
Q 018493          116 KDKSKLVLVE  125 (355)
Q Consensus       116 KdgSkImLv~  125 (355)
                      ++|+.|.++.
T Consensus        84 ~dGDeV~i~p   93 (98)
T 1vjk_A           84 KDGDVVGVFP   93 (98)
T ss_dssp             CTTCEEEEES
T ss_pred             CCCCEEEEEC
Confidence            9999998874

>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A

Probab=80.63  E-value=6.7  Score=29.90  Aligned_cols=58  Identities=17%  Similarity=0.251  Sum_probs=39.8

Q ss_pred             CCEEEEEEEcCCCCHHHHHHHHhcccC-CCc----------cCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493           63 GSIYHEIHINSQATFGELKKLLTGPTG-LHH----------EDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        63 gg~~~~V~V~~~sTVgdLK~~I~e~TG-Vpp----------e~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~  125 (355)
                      |.....++++...||++|.+.|..... +..          ....+..+|+..+.     +.-|++|+.|.++.
T Consensus        16 g~~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~P   84 (89)
T 3po0_A           16 GSRTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALFP   84 (89)
T ss_dssp             TCSEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEEC
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEEC
Confidence            445567888888999999999987642 110          12455567766543     45689999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	355
d1ugoa_	99	a.7.7.1 (A:) BAG-family molecular chaperone regula	5e-20
d1m7ka_	81	a.7.7.1 (A:) Silencer of death domains, Sodd (Bag4	9e-20
d1uk5a_	111	a.7.7.1 (A:) BAG-family molecular chaperone regula	1e-17
d1wxva1	81	d.15.1.1 (A:7-87) Bag-family molecular chaperone r	2e-09
d1j8ca_	103	d.15.1.1 (A:) Ubiquitin-like N-terminal domain of	8e-09
d1v86a_	95	d.15.1.1 (A:) hypothetical D7wsu128e protein {Mous	1e-08
d2bwfa1	73	d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyc	2e-07
d1wx8a1	83	d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus muscul	5e-07
d1yqba1	84	d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapien	7e-07
d1euvb_	79	d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yea	5e-05
d1t0ya_	90	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	0.001
d1zkha1	86	d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-t	0.004

>d1ugoa_ a.7.7.1 (A:) BAG-family molecular chaperone regulator-5, BAG-5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 99

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: BAG domain
family: BAG domain
domain: BAG-family molecular chaperone regulator-5, BAG-5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 81.8 bits (202), Expect = 5e-20
 Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 11/94 (11%)

Query: 144 EKASKSISEISLEVDRLAGQVSALESIITKGGKVAEKDVLNLIELLMNQLLKLDGIMADG 203
             +   + EI  EV  +  QV          G   +K+   L  +L  QL ++D +  +G
Sbjct: 14  HPSISRLQEIQREVKAIEPQVVGFS------GLSDDKNYKRLERILTKQLFEIDSVDTEG 67

Query: 204 D--VKLQRKMQVRRVQKYVETLDMLKIKNSMPSS 235
              ++  RK   +  ++ ++ L+      S PSS
Sbjct: 68  KGDIQQARKRAAQETERLLKELEQ---NASGPSS 98

>d1m7ka_ a.7.7.1 (A:) Silencer of death domains, Sodd (Bag4) {Human (Homo sapiens) [TaxId: 9606]} Length = 81

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: BAG domain
family: BAG domain
domain: Silencer of death domains, Sodd (Bag4)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.2 bits (198), Expect = 9e-20
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 8/84 (9%)

Query: 144 EKASKSISEISLEVDRLAGQVSALESIITKGGKVAEKDVLNLIELLMNQLLKLDGIMADG 203
             + K I  +  +V  L  +V          GK  +K    L E+L  +LL+LD +   G
Sbjct: 2   PPSIKKIIHVLEKVQYLEQEVEEFV------GKKTDKAYWLLEEMLTKELLELDSVETGG 55

Query: 204 D--VKLQRKMQVRRVQKYVETLDM 225
              V+  RK  V ++Q  +E L+ 
Sbjct: 56  QDSVRQARKEAVCKIQAILEKLEK 79

>d1uk5a_ a.7.7.1 (A:) BAG-family molecular chaperone regulator-3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 111

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: BAG domain
family: BAG domain
domain: BAG-family molecular chaperone regulator-3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.6 bits (186), Expect = 1e-17
 Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 6/84 (7%)

Query: 155 LEVDRLAGQVSALESIITK-GGKVAEKDVLNLIELLMNQLLKLDGIMADGD--VKLQRKM 211
           L+V+ +  +V  LE  +    GK  +K  L + E L  +LL LD +  +G   V+  R+ 
Sbjct: 30  LKVEAILEKVQGLEQAVDSFEGKKTDKKYLMIEEYLTKELLALDSVDPEGRADVRQARRD 89

Query: 212 QVRRVQKYVETLDMLKIKNSMPSS 235
            VR+VQ  +E L+    K S PSS
Sbjct: 90  GVRKVQTILEKLEQ---KASGPSS 110

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 81

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (123), Expect = 2e-09
 Identities = 17/75 (22%), Positives = 41/75 (54%), Gaps = 6/75 (8%)

Query: 56  IRVRVKYGSIYHEIHI-----NSQATFGELKKLLTGPTGLHHEDQKLIYKDKE-RDSKAF 109
           + V V + +  H++H+     +S+    +L +++    G+    QKLI+K K  ++ +  
Sbjct: 2   LTVTVTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETP 61

Query: 110 LDVVGVKDKSKLVLV 124
           L  +G++D  +++L+
Sbjct: 62  LSALGIQDGCRVMLI 76

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (120), Expect = 8e-09
 Identities = 21/102 (20%), Positives = 34/102 (33%), Gaps = 2/102 (1%)

Query: 23  AEAAAHEWELRPGGMLVQKRNPDSDRTSAPPPTIRVRVKYGSIYHEIHINSQATFGELKK 82
           AE        RP           S    A P  I+V VK      E  +   ++  + K+
Sbjct: 2   AENGESSGPPRPSRGPAAA--QGSAAAPAEPKIIKVTVKTPKEKEEFAVPENSSVQQFKE 59

Query: 83  LLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLV 124
            ++       +   LI+  K    +  L   G+ D   + LV
Sbjct: 60  AISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLV 101

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.6 bits (118), Expect = 1e-08
 Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 1/71 (1%)

Query: 54  PTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVV 113
             + +++ +    H++ +   +T  ELK+ +   TGL    QK++YK    + K  L  +
Sbjct: 16  ELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPEDKT-LREI 74

Query: 114 GVKDKSKLVLV 124
            V   +K+++V
Sbjct: 75  KVTSGAKIMVV 85

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.5 bits (108), Expect = 2e-07
 Identities = 14/70 (20%), Positives = 34/70 (48%)

Query: 55  TIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVG 114
           ++ + +K G    E+++  ++T  + K+ +    G+   +Q+LIY  K       ++   
Sbjct: 1   SLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYH 60

Query: 115 VKDKSKLVLV 124
           ++D   + LV
Sbjct: 61  IQDGHSVHLV 70

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 83

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.0 bits (106), Expect = 5e-07
 Identities = 17/73 (23%), Positives = 28/73 (38%)

Query: 52  PPPTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLD 111
               IRV VK     HE  +   +     KK ++     + +   LI+  K    +  L 
Sbjct: 7   SSRIIRVSVKTPQDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILS 66

Query: 112 VVGVKDKSKLVLV 124
             G+ D S + +V
Sbjct: 67  QRGILDGSTVHVV 79

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (105), Expect = 7e-07
 Identities = 18/74 (24%), Positives = 29/74 (39%)

Query: 51  APPPTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFL 110
             P  I+V VK      +  +    T  +LK+ ++     H +   LI+  K       L
Sbjct: 3   GSPHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSL 62

Query: 111 DVVGVKDKSKLVLV 124
              GV+D   + LV
Sbjct: 63  AQCGVRDGLTVHLV 76

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} Length = 79

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

 Score = 39.0 bits (91), Expect = 5e-05
 Identities = 10/73 (13%), Positives = 22/73 (30%)

Query: 52  PPPTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLD 111
           P   I ++V  GS      I        L +      G   +  + +Y      +    +
Sbjct: 1   PETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPE 60

Query: 112 VVGVKDKSKLVLV 124
            + ++D   +   
Sbjct: 61  DLDMEDNDIIEAH 73

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 35.2 bits (81), Expect = 0.001
 Identities = 13/78 (16%), Positives = 27/78 (34%), Gaps = 7/78 (8%)

Query: 55  TIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDV-- 112
            + +         E    +  +  +LKK L    G   +  ++   D +   K  L    
Sbjct: 6   DLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGA 65

Query: 113 -----VGVKDKSKLVLVE 125
                +GV+D  ++  V+
Sbjct: 66  KSLKDLGVRDGYRIHAVD 83

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 86

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.7 bits (77), Expect = 0.004
 Identities = 14/81 (17%), Positives = 26/81 (32%), Gaps = 9/81 (11%)

Query: 53  PPTIRVRVKYGSIYHE---------IHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKE 103
           P +I+V+V       E           +        +K  +   TG+    QKL Y+   
Sbjct: 1   PVSIKVQVPNMQDKTEWKLNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIF 60

Query: 104 RDSKAFLDVVGVKDKSKLVLV 124
                 L    + + + + L 
Sbjct: 61  IKDSNSLAYYNMANGAVIHLA 81

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	355
d2bwfa1	73	DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.76
d1wxva1	81	Bag-family molecular chaperone regulator-1 {Human	99.75
d1yqba1	84	Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}	99.74
d1v5ta_	90	8430435i17rik protein {Mouse (Mus musculus) [TaxId	99.74
d1wgga_	96	Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (M	99.73
d1v86a_	95	hypothetical D7wsu128e protein {Mouse (Mus musculu	99.73
d1j8ca_	103	Ubiquitin-like N-terminal domain of PLIC-2 {Human	99.71
d1wx8a1	83	4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]	99.7
d1ugoa_	99	BAG-family molecular chaperone regulator-5, BAG-5	99.68
d1m7ka_	81	Silencer of death domains, Sodd (Bag4) {Human (Hom	99.67
d1uk5a_	111	BAG-family molecular chaperone regulator-3 {Mouse	99.67
d1wh3a_	87	2'-5'-oligoadenylate synthetase-like protein, OASL	99.66
d1m94a_	73	Ubiquitin-like modifier protein hub1 {Baker's yeas	99.66
d1z2ma2	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.66
d1ttna1	80	Dendritic cell-derived ubiquitin-like protein {Hum	99.65
d1bt0a_	73	Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI	99.64
d1z2ma1	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.64
d1ogwa_	76	Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}	99.64
d2zeqa1	78	Ubiquitin-like domain of parkin {Mouse (Mus muscul	99.64
d1oqya4	77	Ubiquitin-like domain of Rad23 homolog A (Hhr23a)	99.64
d1uh6a_	100	Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu	99.6
d1wy8a1	76	Ubiquitin-like PHD and RING finger domain-containi	99.6
d1wx9a1	73	Large proline-rich protein BAT3 {Human (Homo sapie	99.6
d2faza1	76	Ubiquitin-like PHD and RING finger domain-containi	99.57
d1uela_	95	Ubiquitin-like domain of Rad23 homolog B (Hhr23B)	99.57
d1zkha1	86	Splicing factor 3 subunit 1, C-terminal domain {Hu	99.54
d1v5oa_	102	1700011n24rik protein {Mouse (Mus musculus) [TaxId	99.54
d1wgha_	116	Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculu	99.53
d1wiaa_	95	Ubiquitin-like protein bab25500 (2010008E23Rik) {M	99.51
d1wjua_	100	NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens	99.5
d1v2ya_	105	Ubiquitin-like protein 3300001g02rik {Mouse (Mus m	99.48
d1t7sa_	129	BAG-family molecular chaperon regulator-1, BAG1 {N	99.48
d1we6a_	111	Splicing factor 3 subunit 1, C-terminal domain {Th	99.46
d1se9a_	101	Hypothetical protein At3g01050 {Thale cress (Arabi	99.45
d1hx1b_	112	BAG-family molecular chaperon regulator-1, BAG1 {H	99.43
d2c9wb1	103	Elongin B {Human (Homo sapiens) [TaxId: 9606]}	99.4
d1v6ea_	95	Ubiquitin-like domain of tubulin folding cofactor	99.4
d1wgda_	93	Homocysteine-responsive endoplasmic reticulum-resi	99.35
d1wjna_	97	Tubulin-folding protein TbcE {Mouse (Mus musculus)	99.34
d1euvb_	79	SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy	99.32
d1t0ya_	90	Ubiquitin-like domain of tubulin folding cofactor	99.29
d1x1ma1	94	Ubiquitin-like protein 7 {Mouse (Mus musculus) [Ta	99.1
d2uyzb1	77	SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax	98.93
d1wf9a1	94	NPL4-like protein 1 {Thale cress (Arabidopsis thal	98.22
d1wm3a_	72	SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}	98.05
d2al3a1	76	Tether containing UBX domain for GLUT4 (Tug) {Mous	96.74
d1h8ca_	82	Fas-associated factor 1, Faf1 {Human (Homo sapiens	96.18
d2cr5a1	96	UBX domain-containing protein 6 (Reproduction 8) {	94.55
d1i42a_	89	p47 {Rat (Rattus norvegicus) [TaxId: 10116]}	94.12
d1vjka_	88	Molybdopterin synthase subunit MoaD {Pyrococcus fu	93.95
d1wj4a_	124	Hypothetical protein KIAA0794 {Human (Homo sapiens	93.49
d1ip9a_	85	Bud emergence mediator Bemp1 {Baker's yeast (Sacch	92.81
d2bkfa1	85	Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Hum	85.8
d1xo3a_	101	C9orf74 homolog {Mouse (Mus musculus) [TaxId: 1009	83.11

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.76  E-value=8.3e-19  Score=133.89  Aligned_cols=72  Identities=19%  Similarity=0.372  Sum_probs=69.6

Q ss_pred             eeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493           55 TIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED  126 (355)
Q Consensus        55 ~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~  126 (355)
                      +|+|+|++++.+|+|+|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+.+
T Consensus         1 si~I~Vk~~~~~~~i~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~I~~g~~i~lV~~   72 (73)
T d2bwfa1           1 SLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS   72 (73)
T ss_dssp             EEEEEEEETTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred             CEEEEEEeCCeEEEEEECCCChHHHHHHHHHHHHCcChHHeEEEECCeEccCCCcHHHCCCCCCCEEEEEee
Confidence            589999999999999999999999999999999999999999999999999999999999999999999974

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=9.5e-19  Score=136.58  Aligned_cols=74  Identities=24%  Similarity=0.434  Sum_probs=68.7

Q ss_pred             eEEEEEeCCEEEEEEEc-----CCCCHHHHHHHHhcccCCCccCcEEeccCccc-CCchhhhhcCCCCCCEEEEeecCCc
Q 018493           56 IRVRVKYGSIYHEIHIN-----SQATFGELKKLLTGPTGLHHEDQKLIYKDKER-DSKAFLDVVGVKDKSKLVLVEDPIS  129 (355)
Q Consensus        56 I~V~VK~gg~~~~V~V~-----~~sTVgdLK~~I~e~TGVppe~QKLIykGK~l-dD~~tLs~~GIKdgSkImLv~~p~s  129 (355)
                      |+|+|+|++..|+|+|+     +++||++||++|+..+|+|+++|||+|+|+.+ +|+.+|++|||++|++|+||+++.|
T Consensus         2 i~i~V~~~~~~~~i~v~~~~~~~~~Tv~~LK~~I~~~tgvp~~~QkL~~~G~~L~~d~~tL~~~gi~~g~~i~lv~~~~s   81 (81)
T d1wxva1           2 LTVTVTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGKKNS   81 (81)
T ss_dssp             EEEEEECSSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESCCSC
T ss_pred             EEEEEEECCeeEEEEEecCCCCCccHHHHHHHHHHHHHCcCHHHEEeeecCeEeCcCCCChHHCCCCCCCEEEEEEecCC
Confidence            78999999999999995     57899999999999999999999999999997 5788999999999999999997653

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=2.8e-18  Score=134.32  Aligned_cols=77  Identities=23%  Similarity=0.267  Sum_probs=72.8

Q ss_pred             CCCeeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeecCC
Q 018493           52 PPPTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVEDPI  128 (355)
Q Consensus        52 ~~~~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~p~  128 (355)
                      ++.+|+|+|++.+.++.++|++++||++||++|++.+|+|+++|+|+|+|+.++|+.+|++|||++|++|+|+.++.
T Consensus         4 ~~~~i~I~Vkt~~~~~~~~V~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~D~~tL~~y~i~~gsti~lv~r~~   80 (84)
T d1yqba1           4 SPHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQ   80 (84)
T ss_dssp             CTTEEEEEEECSSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCC
T ss_pred             CCCEEEEEEEcCCCcEEEEECCCCcHHHHHHHHHHHHCcCchhEEEEEeeeeccccCcHHHcCCCCCCEEEEEECCC
Confidence            45689999999888899999999999999999999999999999999999999999999999999999999997654

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=1.6e-18  Score=137.16  Aligned_cols=79  Identities=24%  Similarity=0.351  Sum_probs=73.3

Q ss_pred             CCCCeeEEEEEeCCEEEEE-EEcCCCCHHHHHHHHhcccCCCccCcEEe---ccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493           51 APPPTIRVRVKYGSIYHEI-HINSQATFGELKKLLTGPTGLHHEDQKLI---YKDKERDSKAFLDVVGVKDKSKLVLVED  126 (355)
Q Consensus        51 ~~~~~I~V~VK~gg~~~~V-~V~~~sTVgdLK~~I~e~TGVppe~QKLI---ykGK~ldD~~tLs~~GIKdgSkImLv~~  126 (355)
                      .....|+|+|||++..|++ +|++++||.+||++|++.+|||+++||||   |+|+.++|+.+|++|||++|++||||++
T Consensus         3 s~s~~~~i~Vk~~~~~~~i~~v~~~~tV~~LK~~i~~~t~vp~~~QkLi~~~~~Gk~L~D~~tL~~~~i~~g~~i~lv~s   82 (90)
T d1v5ta_           3 SGSSGLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGT   82 (90)
T ss_dssp             CCCCSCCEEEEETTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECC
T ss_pred             CCCCcEEEEEEECCeEEEEEEeCCCCcHHHHHHHHHHHHcCCHHHhhhhhhccCCcCCCCcCcHHHcCCCCCCEEEEEee
Confidence            4567899999999999998 59999999999999999999999999999   5899999999999999999999999987


Q ss_pred             CCc
Q 018493          127 PIS  129 (355)
Q Consensus       127 p~s  129 (355)
                      +.+
T Consensus        83 ~~~   85 (90)
T d1v5ta_          83 RES   85 (90)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            653

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=2.8e-18  Score=137.80  Aligned_cols=77  Identities=17%  Similarity=0.195  Sum_probs=70.4

Q ss_pred             CCCCeeEEEEEeCCEEE-EEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeecCC
Q 018493           51 APPPTIRVRVKYGSIYH-EIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVEDPI  128 (355)
Q Consensus        51 ~~~~~I~V~VK~gg~~~-~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~p~  128 (355)
                      .....|+|+|||++..| .|+|++++||.+||++|++.+|||+++|||||+|+.|+|+ +|++|||++|++||||+.+.
T Consensus         3 s~s~~~~I~VK~~~~~~~~v~v~~~~tV~~lK~~i~~~~gvp~~~QkLi~~Gk~L~d~-tL~~~gi~~g~~i~lv~t~~   80 (96)
T d1wgga_           3 SGSSGYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSAD   80 (96)
T ss_dssp             SCCCEEEEEEEETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCCC
T ss_pred             CCCCceEEEEEeCCCCEEEEEECCCCcHHHHHHHhhhhcCccceeeEEeecCcccCCC-cHHHCCCCCCCEEEEEeeCC
Confidence            45678999999977665 7999999999999999999999999999999999999886 79999999999999998654

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=3.8e-18  Score=136.81  Aligned_cols=76  Identities=21%  Similarity=0.317  Sum_probs=71.4

Q ss_pred             CCCCeeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeecC
Q 018493           51 APPPTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVEDP  127 (355)
Q Consensus        51 ~~~~~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~p  127 (355)
                      .....|+|+|+|++++|+|+|++++||.+||++|++.+|||+++|||+|+|+ ++|+.+|++|||++|++|+||+..
T Consensus        13 ~~~~~i~v~V~~~~k~~~i~v~~~~TV~~LK~~I~~~tgvp~~~q~Li~~g~-l~D~~tL~~~~I~~gs~i~lvgs~   88 (95)
T d1v86a_          13 VGKELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGL-VPEDKTLREIKVTSGAKIMVVGST   88 (95)
T ss_dssp             CCCCCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSB-CCSSSBHHHHCCCTTEEEEECCSS
T ss_pred             CCccEEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEeccc-ccCCCcHHHCCCCCCCEEEEEecC
Confidence            3456899999999999999999999999999999999999999999999997 888999999999999999999854

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=9e-18  Score=136.02  Aligned_cols=75  Identities=21%  Similarity=0.245  Sum_probs=70.9

Q ss_pred             CCCCeeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493           51 APPPTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        51 ~~~~~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~  125 (355)
                      .....|+|+||+.+.++.|+|++++||++||++|++.+||++++|+|+|+|+.|+|+.+|++|||++|++|+|+.
T Consensus        28 ~~~~~i~V~Vk~~~~~~~i~V~~~~tV~~LK~~I~~~~gi~~~~qrLi~~Gk~L~D~~tL~~~~I~~g~~I~lvl  102 (103)
T d1j8ca_          28 AEPKIIKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVI  102 (103)
T ss_dssp             CCCCCEEEEEECSSCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEE
T ss_pred             CCCCeEEEEEECCCccEEEEECCCChHHHHHHHHHHHHCcCHHHeeeeeeeecccCCCcHHHcCCCCCCEEEEEE
Confidence            345679999999888899999999999999999999999999999999999999999999999999999999985

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=8.7e-18  Score=131.21  Aligned_cols=76  Identities=22%  Similarity=0.260  Sum_probs=71.8

Q ss_pred             CCCCeeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493           51 APPPTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED  126 (355)
Q Consensus        51 ~~~~~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~  126 (355)
                      ++...|.|+|++.+..++|+|++++||++||+.|++.+|+|+++|+|+|+||.|+|+.+|++|||++|++|+|+.+
T Consensus         6 ~~~~~i~v~Vk~~~~~~~i~v~~~~tV~~lK~~I~~~~~v~~~~qrL~f~Gk~L~d~~tL~~~gI~~gs~I~lv~r   81 (83)
T d1wx8a1           6 PSSRIIRVSVKTPQDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVR   81 (83)
T ss_dssp             CCSCEEEEEEECSSSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBC
T ss_pred             CCCCeEEEEEEcCCCcEEEEECCCChHHHHHHHHHHHhCCChhHEEEEEEhhccccCCcHHHcCCCCCCEEEEEEe
Confidence            3567899999998888999999999999999999999999999999999999999999999999999999999864

>d1ugoa_ a.7.7.1 (A:) BAG-family molecular chaperone regulator-5, BAG-5 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: BAG domain
family: BAG domain
domain: BAG-family molecular chaperone regulator-5, BAG-5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=2.8e-17  Score=133.71  Aligned_cols=75  Identities=24%  Similarity=0.431  Sum_probs=68.0

Q ss_pred             hhhhhHHHHHHHHHHhhhhHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHhccCCCCCh--hhHHHHHHHHHHHHHHHHH
Q 018493          145 KASKSISEISLEVDRLAGQVSALESIITKGGKVAEKDVLNLIELLMNQLLKLDGIMADG--DVKLQRKMQVRRVQKYVET  222 (355)
Q Consensus       145 ka~~aIs~V~~eVDkLa~ev~~LE~~I~~g~Kv~eke~~~LsE~LMq~LLKLD~IeaeG--daR~qRK~~VkrVQ~~Le~  222 (355)
                      .+..+|..|..+|++|..+|..+      .++..+++|.+|+|+||+.|||||+|+++|  ++|.+||.+|++||++|+.
T Consensus        15 ~sl~~I~~i~~ev~~L~~~V~~f------~~~~~dke~~~L~E~L~~~LlkLD~Ie~~G~~~vR~~RK~~vk~vQ~~l~~   88 (99)
T d1ugoa_          15 PSISRLQEIQREVKAIEPQVVGF------SGLSDDKNYKRLERILTKQLFEIDSVDTEGKGDIQQARKRAAQETERLLKE   88 (99)
T ss_dssp             TTHHHHHHHHHHHHHSHHHHHTC------CCCTTSSHHHHHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH------hCccchHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHH
Confidence            36678999999999998888887      456779999999999999999999999988  6899999999999999999


Q ss_pred             HHH
Q 018493          223 LDM  225 (355)
Q Consensus       223 LD~  225 (355)
                      ||.
T Consensus        89 LD~   91 (99)
T d1ugoa_          89 LEQ   91 (99)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            995

>d1m7ka_ a.7.7.1 (A:) Silencer of death domains, Sodd (Bag4) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: BAG domain
family: BAG domain
domain: Silencer of death domains, Sodd (Bag4)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=8.2e-17  Score=126.59  Aligned_cols=73  Identities=32%  Similarity=0.424  Sum_probs=63.6

Q ss_pred             hhhHHHHHHHHHHhhhhHHHHHHHHHhCCCcchhhHhhHHHHHHHHHHhccCCCCCh--hhHHHHHHHHHHHHHHHHHHH
Q 018493          147 SKSISEISLEVDRLAGQVSALESIITKGGKVAEKDVLNLIELLMNQLLKLDGIMADG--DVKLQRKMQVRRVQKYVETLD  224 (355)
Q Consensus       147 ~~aIs~V~~eVDkLa~ev~~LE~~I~~g~Kv~eke~~~LsE~LMq~LLKLD~IeaeG--daR~qRK~~VkrVQ~~Le~LD  224 (355)
                      ...|..|..+|++|..+|..|      .++..+++|..|+|+||++|||||+|+++|  ++|.+||++|++||++|+.||
T Consensus         5 ~~~I~~i~~~v~~l~~~V~~f------~g~~~dke~~~L~E~L~~~llkLD~Ie~~G~~~vR~~RK~~vk~vq~~l~~LD   78 (81)
T d1m7ka_           5 IKKIIHVLEKVQYLEQEVEEF------VGKKTDKAYWLLEEMLTKELLELDSVETGGQDSVRQARKEAVCKIQAILEKLE   78 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC------CSCTTSHHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH------cCCcccHHHHHHHHHHHHHHHHhCCcccCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence            456777777777777766666      456779999999999999999999999999  589999999999999999999


Q ss_pred             H
Q 018493          225 M  225 (355)
Q Consensus       225 ~  225 (355)
                      .
T Consensus        79 ~   79 (81)
T d1m7ka_          79 K   79 (81)
T ss_dssp             H
T ss_pred             c
Confidence            6

>d1uk5a_ a.7.7.1 (A:) BAG-family molecular chaperone regulator-3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: BAG domain
family: BAG domain
domain: BAG-family molecular chaperone regulator-3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=9.5e-17  Score=132.96  Aligned_cols=70  Identities=34%  Similarity=0.545  Sum_probs=60.7

Q ss_pred             HHHHhhhhHHHHHHHHHh-CCCcchhhHhhHHHHHHHHHHhccCCCCCh--hhHHHHHHHHHHHHHHHHHHHH
Q 018493          156 EVDRLAGQVSALESIITK-GGKVAEKDVLNLIELLMNQLLKLDGIMADG--DVKLQRKMQVRRVQKYVETLDM  225 (355)
Q Consensus       156 eVDkLa~ev~~LE~~I~~-g~Kv~eke~~~LsE~LMq~LLKLD~IeaeG--daR~qRK~~VkrVQ~~Le~LD~  225 (355)
                      +|+++..+|..|+..|.. +++..+++|++|+|+||++|||||+|+++|  ++|.+||.+||+||++|+.||.
T Consensus        31 ki~~i~~~v~~L~~~V~~f~g~~~dkey~~L~E~L~~~LlkLD~Ie~~G~~~vR~~RK~~vk~vQ~~l~~LD~  103 (111)
T d1uk5a_          31 KVEAILEKVQGLEQAVDSFEGKKTDKKYLMIEEYLTKELLALDSVDPEGRADVRQARRDGVRKVQTILEKLEQ  103 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCSCSSSHHHHHHHHHHHHHHHHHHSCCCSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            455555666666666665 678889999999999999999999999999  5999999999999999999997

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.3e-16  Score=125.29  Aligned_cols=75  Identities=23%  Similarity=0.271  Sum_probs=70.3

Q ss_pred             CCCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493           52 PPPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED  126 (355)
Q Consensus        52 ~~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~  126 (355)
                      ....|.|.|+. +++++.|+|.+++||.+||++|++++|||+++|+|+|+||.|+|+.+|.+|||++|++|+|+..
T Consensus         4 ~s~~mqI~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~d~~tL~~y~I~~~stl~l~~r   79 (87)
T d1wh3a_           4 GSSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKK   79 (87)
T ss_dssp             CSSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEEC
T ss_pred             CCCcEEEEEECCCCCEEEEEECCcCcHHHHHHHHHHHHCcChHHeEEEeeceEcCCCCcHHHcCCCCCCEEEEEec
Confidence            45678899997 6789999999999999999999999999999999999999999999999999999999999864

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.66  E-value=7.9e-17  Score=123.02  Aligned_cols=70  Identities=20%  Similarity=0.173  Sum_probs=67.1

Q ss_pred             eeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEe
Q 018493           55 TIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLV  124 (355)
Q Consensus        55 ~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv  124 (355)
                      +|.|+|+. .|+++.|+|.+++||.+||++|++.+|+|+++|+|+|+||.|+|+.+|++|||++|++|+|.
T Consensus         1 mi~i~vk~~~Gk~~~v~V~~~~tV~~lK~~I~~~~~i~~~~q~Li~~Gk~L~d~~tL~~y~I~~gstl~L~   71 (73)
T d1m94a_           1 MIEVVVNDRLGKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY   71 (73)
T ss_dssp             CEEEEEEETTTEEEEEEECTTSBHHHHHHHHHHHHCCTTTSEEEESSSCEECTTSBHHHHTCCTTEEEEEE
T ss_pred             CeEEEEECCCCCEEEEEECCcCcHHHHHHHHHHhhcccccEEEEEEEeEEecccCcHHHcCCCCCCEEEEE
Confidence            58899998 48999999999999999999999999999999999999999999999999999999999984

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.1e-16  Score=122.47  Aligned_cols=72  Identities=17%  Similarity=0.214  Sum_probs=68.3

Q ss_pred             CeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493           54 PTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        54 ~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~  125 (355)
                      ..|.|.|+. .|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+.
T Consensus         2 ~~~qi~Vk~~~G~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~qrL~~~gk~L~d~~tL~~y~I~~~sti~l~l   74 (76)
T d1z2ma2           2 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNL   74 (76)
T ss_dssp             CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred             CCEEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHhcCChhHeEEEECCeECCCCCcHHHcCCCCCCEEEEEE
Confidence            468899996 678999999999999999999999999999999999999999999999999999999999975

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.7e-16  Score=122.83  Aligned_cols=73  Identities=11%  Similarity=0.194  Sum_probs=69.0

Q ss_pred             CeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493           54 PTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED  126 (355)
Q Consensus        54 ~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~  126 (355)
                      ..|.|+|+. .|+++.++|.+++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+..
T Consensus         2 ~e~qi~Vk~~~G~~~~l~V~~~~tV~~lK~~I~~~~~ip~~~qrLi~~Gk~L~d~~tL~~y~I~~~sti~lvi~   75 (80)
T d1ttna1           2 YECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVS   75 (80)
T ss_dssp             CSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECC
T ss_pred             CeEEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCcccEEEEECceEcCCCCcHHHcCCCCCCEEEEEec
Confidence            468899997 5799999999999999999999999999999999999999999999999999999999999864

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.64  E-value=1.3e-16  Score=121.25  Aligned_cols=70  Identities=24%  Similarity=0.284  Sum_probs=65.8

Q ss_pred             eEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493           56 IRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        56 I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~  125 (355)
                      +.|+||. .|+++.++|++++||++||++|++.+|+|+++|+|+|+||.++|+.+|++|||++|++|+|+-
T Consensus         1 M~I~Vk~~~G~~~~l~V~~~~tV~~lK~~i~~~~gi~~~~qrLi~~Gk~L~d~~tL~~y~I~~~sti~lvl   71 (73)
T d1bt0a_           1 MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVL   71 (73)
T ss_dssp             CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEe
Confidence            4678885 678999999999999999999999999999999999999999999999999999999999974

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.4e-16  Score=121.14  Aligned_cols=71  Identities=24%  Similarity=0.302  Sum_probs=65.6

Q ss_pred             EEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEec--cCcccCCchhhhhcCCCCCCEEEEeecC
Q 018493           57 RVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIY--KDKERDSKAFLDVVGVKDKSKLVLVEDP  127 (355)
Q Consensus        57 ~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIy--kGK~ldD~~tLs~~GIKdgSkImLv~~p  127 (355)
                      .|+||. +|+.+.|+|++++||.+||++|++.+|||+++|||+|  +||.++|+.+|++|||++|++|+|+...
T Consensus         2 ~l~Vk~l~G~~~~v~V~~~~tV~~lK~~I~~~~gip~~~QrLi~~~~Gk~L~D~~tL~~y~i~~g~~i~lv~~~   75 (76)
T d1z2ma1           2 DLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDK   75 (76)
T ss_dssp             EEEEEESSSCEEEEECCSSCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCSSSCSGGGTCCTTCEEEEEECC
T ss_pred             EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhccCCccEEEEEcCCCeeccCCCcHHHcCCCCCCEEEEEEEC
Confidence            467774 6788999999999999999999999999999999999  7999999999999999999999999753

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.2e-16  Score=120.80  Aligned_cols=71  Identities=20%  Similarity=0.303  Sum_probs=66.6

Q ss_pred             eEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493           56 IRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED  126 (355)
Q Consensus        56 I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~  126 (355)
                      |.|.|++ .|.++.++|++++||++||++|+..+|+|+++|+|+|+||.++|+.+|++|||++|++|+|+..
T Consensus         1 MqI~Vk~l~G~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~qrL~~~Gk~L~d~~tL~~y~i~~~s~I~L~~r   72 (76)
T d1ogwa_           1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR   72 (76)
T ss_dssp             CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred             CEEEEEcCCCCEEEEEECCCCcHHHHHHhhhhhcCCChHHEEeEECCeEcCCCCCHHHcCCCCCCEEEEEEe
Confidence            4688886 5789999999999999999999999999999999999999999999999999999999999853

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=1.8e-16  Score=122.62  Aligned_cols=72  Identities=18%  Similarity=0.356  Sum_probs=67.3

Q ss_pred             eEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeecC
Q 018493           56 IRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVEDP  127 (355)
Q Consensus        56 I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~p  127 (355)
                      +.|.|+. .|+++.|+|++++||.+||++|++.+|||+++|+|+|+||+|+|+.+|++|||++||+|+|+..+
T Consensus         3 M~I~Vk~~~g~t~~l~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~y~I~~~sti~lv~R~   75 (78)
T d2zeqa1           3 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRP   75 (78)
T ss_dssp             EEEEEESSSSSCEEEEECTTCBHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCBGGGSSCCTTCEEEEEESS
T ss_pred             eEEEEEcCCCCEEEEEEcccccHHHHHHHHHHHHCcChhHeEEEEeeeEcCCCCCHHHcCCCCCCEEEEEecc
Confidence            5688885 67899999999999999999999999999999999999999999999999999999999998754

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.2e-16  Score=122.76  Aligned_cols=71  Identities=20%  Similarity=0.276  Sum_probs=66.8

Q ss_pred             eeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccC---CCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493           55 TIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTG---LHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        55 ~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TG---Vppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~  125 (355)
                      .|+|+||. .|.+|.|+|++++||++||++|++..|   +|+++|||+|+||.|+|+.+|++|||++|++|+||.
T Consensus         2 ~~~i~vk~l~g~~~~l~v~~~~TV~~lK~~i~~~~g~~~i~~~~qrLi~~Gk~L~D~~tL~~y~I~~~s~i~~~v   76 (77)
T d1oqya4           2 AVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMV   76 (77)
T ss_dssp             CCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEE
T ss_pred             cEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCChHHEEeEECCcCccCCCcHHHcCCCCCCEEEEEE
Confidence            57899997 679999999999999999999999887   899999999999999999999999999999999975

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=5.2e-16  Score=125.99  Aligned_cols=73  Identities=22%  Similarity=0.169  Sum_probs=69.2

Q ss_pred             CCCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEe
Q 018493           52 PPPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLV  124 (355)
Q Consensus        52 ~~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv  124 (355)
                      +..+|.|.|+. .|+.+.|.|.+++||++||++|++.+|+|+++|+|+|+||.|+|+.+|++|||++|++|+|.
T Consensus        25 ~~~~i~V~V~~~~Gk~~~v~V~p~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~dygI~~GstI~L~   98 (100)
T d1uh6a_          25 AATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELY   98 (100)
T ss_dssp             CCCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEE
T ss_pred             CCceEEEEEECCCCCEEEEEECCcChHHHHHHHHHHHHCCCcceEEEEEEeecccCcCCHHHcCCCCCCEEEEE
Confidence            45679999998 57889999999999999999999999999999999999999999999999999999999986

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=7.5e-16  Score=118.70  Aligned_cols=72  Identities=26%  Similarity=0.278  Sum_probs=64.2

Q ss_pred             eEEEEEeCCEEEEE-EEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeecC
Q 018493           56 IRVRVKYGSIYHEI-HINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVEDP  127 (355)
Q Consensus        56 I~V~VK~gg~~~~V-~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~p  127 (355)
                      |+|+...|.+++.+ .|++++||.+||.+|++.+|+|+++|+|+|+|+.++|+.+|++|||++|++|+|+..|
T Consensus         3 I~Vk~l~G~~t~~~~~v~~~~TV~~lK~~I~~~~gip~~~qrLi~~Gk~L~d~~tL~~y~I~~~s~i~lv~rp   75 (76)
T d1wy8a1           3 IQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRP   75 (76)
T ss_dssp             EEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECC
T ss_pred             EEEEeCCCCceEEEeccCCCChHHHHHHHHHHHHCCCchhcEEEEEeeEecCCCCHHHcCCCCCCEEEEEEcc
Confidence            34444456677777 5999999999999999999999999999999999999999999999999999998765

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=3.4e-16  Score=119.31  Aligned_cols=70  Identities=24%  Similarity=0.314  Sum_probs=65.2

Q ss_pred             eEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493           56 IRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED  126 (355)
Q Consensus        56 I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~  126 (355)
                      |.|+|+. +|+++.++|++++||++||++|++.+|+|+++|||+|+|+.|+|+.+|++||| +|++|+|+.+
T Consensus         1 m~I~Vk~~~g~~~~l~V~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~d~~tL~dy~i-~~~ti~lv~r   71 (73)
T d1wx9a1           1 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVER   71 (73)
T ss_dssp             EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHCCCTTTCCCEETTEECCSSSBHHHHTC-TTEEEBCCCS
T ss_pred             CEEEEEcCCCCEEEEEECCCChHHHHHHHHHHHhCCChHHEEEEECCeEccCCCCHHHhCC-CCCEEEEEec
Confidence            5788886 67899999999999999999999999999999999999999999999999999 5899998854

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.4e-15  Score=117.19  Aligned_cols=70  Identities=17%  Similarity=0.239  Sum_probs=63.6

Q ss_pred             EEEEE--eCCEEEEEE-EcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493           57 RVRVK--YGSIYHEIH-INSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED  126 (355)
Q Consensus        57 ~V~VK--~gg~~~~V~-V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~  126 (355)
                      .|.|+  .|..++.++ +++++||++||++|++.+|+|+++|+|+|+||.++|+.+|++|||++|++|+|+..
T Consensus         2 ~I~Vktl~Gk~t~~l~~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~~sti~lv~r   74 (76)
T d2faza1           2 WIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVR   74 (76)
T ss_dssp             EEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEEC
T ss_pred             EEEEEeCCCCcEEEEecCCCCCCHHHHHHHHHHHHCcChHHeEEEEeeEeccCCCcHHHcCCCCCCEEEEEEE
Confidence            45666  455688885 89999999999999999999999999999999999999999999999999999864

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2.7e-15  Score=119.19  Aligned_cols=71  Identities=24%  Similarity=0.335  Sum_probs=65.0

Q ss_pred             eEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccC---CCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493           56 IRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTG---LHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED  126 (355)
Q Consensus        56 I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TG---Vppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~  126 (355)
                      +.|+|+. .|++|.|+|++++||++||++|++.+|   +|+++|||||+||.|+|+.+|++|||++|++|+|+..
T Consensus         1 M~I~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~~~~i~~~~qrLi~~Gk~L~d~~tL~~y~I~~~s~i~lv~~   75 (95)
T d1uela_           1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVT   75 (95)
T ss_dssp             CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEES
T ss_pred             CEEEEEeCCCCEEEEEECCCccHHHHHHHHHhhhcccCCCccceEEEECCeEccCCCcHHHcCCCCCCEEEEEEC
Confidence            3677885 678899999999999999999999876   8899999999999999999999999999999999864

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=4.8e-15  Score=116.69  Aligned_cols=64  Identities=14%  Similarity=0.104  Sum_probs=61.1

Q ss_pred             CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493           63 GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED  126 (355)
Q Consensus        63 gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~  126 (355)
                      .|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+.+
T Consensus        20 ~G~~~~l~v~~~~tV~~lK~~I~~~~~ip~~~q~Li~~Gk~L~D~~tL~dY~I~~gsti~l~~r   83 (86)
T d1zkha1          20 NGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVIHLALK   83 (86)
T ss_dssp             SSCEEEEEECTTSBHHHHHHHHHHHTCCCTTTEEEEETTEEECTTSBHHHHTCCTTEEEEEEES
T ss_pred             CCeEEEEEECCCChHHHHHHHHHhhhcCChHHEEEEeCCcCcCCCCCHHHcCCCCCCEEEEEEe
Confidence            5788999999999999999999999999999999999999999999999999999999999853

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=4.9e-15  Score=120.25  Aligned_cols=75  Identities=19%  Similarity=0.317  Sum_probs=64.9

Q ss_pred             CCCeeEEEEEe---CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCccc-CCchhhhhcCCCCCCEEEEeec
Q 018493           52 PPPTIRVRVKY---GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKER-DSKAFLDVVGVKDKSKLVLVED  126 (355)
Q Consensus        52 ~~~~I~V~VK~---gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~l-dD~~tLs~~GIKdgSkImLv~~  126 (355)
                      ++-.|+|.+..   .+.+|.|+|++++||.+||++|+..+|||+++|+|+|+||.| +|..+|.+|||++|+.|+|+..
T Consensus         6 ~~m~itV~~~~~~~~~~t~~l~V~~~~tV~~LK~~Ie~~~gip~~~Q~Li~~Gk~L~dd~~tL~~~gI~~g~~i~l~~r   84 (102)
T d1v5oa_           6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQK   84 (102)
T ss_dssp             CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBC
T ss_pred             CCEEEEEEecccCCCCCEEEEEECCcccHHHHHHHHHHHhCCCcceEEEEeCCeEeecccCCHHHcCCCCCCEEEEEEC
Confidence            33345554443   467999999999999999999999999999999999999998 5778999999999999999864

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=1.5e-14  Score=120.16  Aligned_cols=77  Identities=14%  Similarity=0.173  Sum_probs=69.3

Q ss_pred             CCCCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHH--------hcccCCCccCcEEeccCcccCCchhhhhcCCCCCCE-
Q 018493           51 APPPTIRVRVKY-GSIYHEIHINSQATFGELKKLL--------TGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSK-  120 (355)
Q Consensus        51 ~~~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I--------~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSk-  120 (355)
                      .+..+|.|+|+. .|+++.+.|++++||++||++|        ++..|+++++|||||.||.|+|+.+|.+|+|++|++ 
T Consensus        12 ~~~~~i~i~v~~l~Gk~~~~~v~p~~TV~~lK~~I~~~~p~~~~e~~~~~~~~qRLiy~Gk~L~D~~tL~~~~i~~g~~~   91 (116)
T d1wgha_          12 VPADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTT   91 (116)
T ss_dssp             CCSSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEE
T ss_pred             CCCCeEEEEEEEcCCCEEEEEECCcchHHHHHHHHHhhcccccccccCCChHHeEEEECCEEecCCCCHHHcCCCCCCEE
Confidence            456789999996 5788999999999999999999        688999999999999999999999999999999987 


Q ss_pred             -EEEeecC
Q 018493          121 -LVLVEDP  127 (355)
Q Consensus       121 -ImLv~~p  127 (355)
                       |||+..+
T Consensus        92 ~lhlv~r~   99 (116)
T d1wgha_          92 VMHLVARE   99 (116)
T ss_dssp             EEEEEECS
T ss_pred             EEEEEeCC
Confidence             6666553

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=2.4e-14  Score=114.94  Aligned_cols=73  Identities=19%  Similarity=0.239  Sum_probs=65.2

Q ss_pred             CCCCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCccc-CCchhhhhcCCCCCCEEEEeec
Q 018493           51 APPPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKER-DSKAFLDVVGVKDKSKLVLVED  126 (355)
Q Consensus        51 ~~~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~l-dD~~tLs~~GIKdgSkImLv~~  126 (355)
                      .....|+|+||. .+..+.|.|.+++||++||++|+.   +++++|||||+||.| ||..+|++|||++|++|+|+..
T Consensus         3 ~~~s~m~i~vK~l~~~~~~v~v~~~~TV~~lK~~i~~---~~~~~qrLi~~Gk~L~dd~~tL~~y~i~~g~~v~l~~~   77 (95)
T d1wiaa_           3 SGSSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFP---GQESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRS   77 (95)
T ss_dssp             CCCCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSS---STTTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECC
T ss_pred             CCCCcEEEEEEcCCCCEEEEEECCcCcHHHHHHHHhc---CCcceeEEEECCEEcccCCCCHHHcCCCCCCEEEEEEc
Confidence            346789999998 678999999999999999999974   578999999999998 5778999999999999999864

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=7e-15  Score=118.90  Aligned_cols=74  Identities=20%  Similarity=0.183  Sum_probs=67.0

Q ss_pred             CeeEEEEEe---CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeecC
Q 018493           54 PTIRVRVKY---GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVEDP  127 (355)
Q Consensus        54 ~~I~V~VK~---gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~p  127 (355)
                      ++|.|.|..   .+.++.|+|..++||.+||++|++.+|+|+++|||||+||.|+|+.+|++|||++|++||||...
T Consensus        16 ati~V~~~~~~~~g~~~~lev~~~~TV~~LK~~I~~~~gi~~~~qkLi~~Gk~L~d~~tL~~~gI~~~s~i~vi~~~   92 (100)
T d1wjua_          16 ATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVLELK   92 (100)
T ss_dssp             EEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEEECCC
T ss_pred             EEEEEEEeeccCCCeEEEEEECCCcHHHHHHHHHHHHHCCCCeeEEEEEcccCcCCCcCHHHcCCCCCCEEEEEEcC
Confidence            467777642   56889999999999999999999999999999999999999999999999999999999998643

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.48  E-value=8.8e-15  Score=119.09  Aligned_cols=75  Identities=17%  Similarity=0.231  Sum_probs=67.8

Q ss_pred             CCCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcE---------------EeccCcccCC-chhhhhcC
Q 018493           52 PPPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQK---------------LIYKDKERDS-KAFLDVVG  114 (355)
Q Consensus        52 ~~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QK---------------LIykGK~ldD-~~tLs~~G  114 (355)
                      ....|+|+|+. .|..++|+|++++||.+||++|++.+|||+++||               |+|+|+.|.| ..+|++||
T Consensus         4 gss~M~v~Vk~~~G~~~~v~V~~~~TV~~LK~~I~~~~~ip~~~Qr~~~~~~~~~~~~~~~Li~~G~~L~d~~~tL~~~g   83 (105)
T d1v2ya_           4 GSSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYG   83 (105)
T ss_dssp             CCCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHT
T ss_pred             CCCcEEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcCHHHhcccccccccccccceEEEECCEECcccCCCHHHcC
Confidence            34678999986 6789999999999999999999999999999998               9999999854 56999999


Q ss_pred             CCCCCEEEEeec
Q 018493          115 VKDKSKLVLVED  126 (355)
Q Consensus       115 IKdgSkImLv~~  126 (355)
                      |++|++|+|+..
T Consensus        84 I~~g~~l~lv~r   95 (105)
T d1v2ya_          84 IRNRDEVSFIKK   95 (105)
T ss_dssp             CCSSEEEEEEEC
T ss_pred             CCCCCEEEEEEe
Confidence            999999999864

>d1t7sa_ a.7.7.1 (A:) BAG-family molecular chaperon regulator-1, BAG1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: BAG domain
family: BAG domain
domain: BAG-family molecular chaperon regulator-1, BAG1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.48  E-value=4.4e-14  Score=118.43  Aligned_cols=107  Identities=22%  Similarity=0.207  Sum_probs=85.5

Q ss_pred             CEEEEeecCCchHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhh-hhHHHHHH-------HHHhCCCcchhhHhhHHHHHH
Q 018493          119 SKLVLVEDPISQEKRLLEMRKNAKLEKASKSISEISLEVDRLA-GQVSALES-------IITKGGKVAEKDVLNLIELLM  190 (355)
Q Consensus       119 SkImLv~~p~s~E~~~~e~kk~k~ieka~~aIs~V~~eVDkLa-~ev~~LE~-------~I~~g~Kv~eke~~~LsE~LM  190 (355)
                      ++|||+|++.+++++ .++++..++++....   +...+.++. .++..||+       ...+..|+ ++++..++|.+|
T Consensus         1 ~kvMviGKk~~peed-~~lK~L~~~Ek~v~~---~~~kl~~~n~~el~giekGFL~k~l~~eal~kl-~Krik~~~E~~M   75 (129)
T d1t7sa_           1 DKIIVMGGKNALVDD-AGFKMLMQYEKHNLS---NLQKAYDLNLRDVADLERGFLEKPKQVEMGKKL-EKKVKYFNEEAE   75 (129)
T ss_dssp             CCCEEECSSSEEECH-HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred             CceeeeCCCCCcHHH-HHHHHHHHHHHHHHH---HHHHHHhhhHHHHHHHHhcccccHHHHHHHHHH-HHHHHHHHHHHH
Confidence            579999999999988 778888888775543   333444443 46666665       55566777 999999999999


Q ss_pred             HHHHhccCCCC---------ChhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 018493          191 NQLLKLDGIMA---------DGDVKLQRKMQVRRVQKYVETLDMLKIKN  230 (355)
Q Consensus       191 q~LLKLD~Iea---------eGdaR~qRK~~VkrVQ~~Le~LD~lk~~n  230 (355)
                      +.|+.||++..         ..++|.+||.+|++||.+|.++|.+.++-
T Consensus        76 k~LEtLDsl~l~~~~~~ee~~~~~R~kRK~LV~~iQ~~L~~~D~l~~~i  124 (129)
T d1t7sa_          76 RHLETLDGMNIITETTPENQAKRNREKRKTLVNGIQTLLNQNDALLRRL  124 (129)
T ss_dssp             HHHHHHHTEEECCCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhcCCcccCcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            99999999932         22899999999999999999999998763

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.46  E-value=2.7e-14  Score=117.64  Aligned_cols=71  Identities=27%  Similarity=0.250  Sum_probs=63.5

Q ss_pred             eeEEEEE--eCCEEEEEEEcC-CCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493           55 TIRVRVK--YGSIYHEIHINS-QATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        55 ~I~V~VK--~gg~~~~V~V~~-~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~  125 (355)
                      +|+|.|+  +.|+++.|.|.+ ++||.+||.+|++.+|+|+++|||+|+||.|+|+.+|.+|||++|++|+|+.
T Consensus        29 ti~V~v~~~~~G~~i~l~v~~~sdtV~~lK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ynI~~gsti~L~l  102 (111)
T d1we6a_          29 TIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSL  102 (111)
T ss_dssp             EEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEEC
T ss_pred             EEEEEcccCCCCeEEEEEecCCccHHHHHHHHHHHHHCCCccceEEEEeeEEccccCCHHHcCCCCCCEEEEEe
Confidence            3444443  357889999976 8999999999999999999999999999999999999999999999999985

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.45  E-value=6.3e-14  Score=114.03  Aligned_cols=76  Identities=12%  Similarity=0.096  Sum_probs=65.5

Q ss_pred             CCeeEEEEEe--CCEEEEEEEcCCCCHHHHHHHHhcc-----cCCC--ccCcEEeccCcccCCchhhhhcCCCCCC----
Q 018493           53 PPTIRVRVKY--GSIYHEIHINSQATFGELKKLLTGP-----TGLH--HEDQKLIYKDKERDSKAFLDVVGVKDKS----  119 (355)
Q Consensus        53 ~~~I~V~VK~--gg~~~~V~V~~~sTVgdLK~~I~e~-----TGVp--pe~QKLIykGK~ldD~~tLs~~GIKdgS----  119 (355)
                      ...|.|+|+.  |...+++.|++++||.+||++|+..     .|+|  +++|||||+||.|+|+.+|.+|+|.+|+    
T Consensus         5 ~~~i~I~~r~~~G~~i~~~~v~~s~TV~~lK~~I~~~~~~~k~~iP~~~~~qRLIf~Gk~L~D~~tL~dy~i~~g~~~~~   84 (101)
T d1se9a_           5 HNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGA   84 (101)
T ss_dssp             CCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTC
T ss_pred             cceEEEEEEeCCCCeecceecCccCHHHHHHHHHHHhccccccCCCCCcccEEEEECCeEecCCCCHHHcCCCCCCcCCC
Confidence            3456666665  5556789999999999999999764     8898  8899999999999999999999999998    


Q ss_pred             --EEEEeecCC
Q 018493          120 --KLVLVEDPI  128 (355)
Q Consensus       120 --kImLv~~p~  128 (355)
                        +|||+..+.
T Consensus        85 ~~tmHlVvrpp   95 (101)
T d1se9a_          85 VTTMHVIIQAP   95 (101)
T ss_dssp             CEEEEEEECCC
T ss_pred             ceEEEEEeCCC
Confidence              999997654

>d1hx1b_ a.7.7.1 (B:) BAG-family molecular chaperon regulator-1, BAG1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: BAG domain
family: BAG domain
domain: BAG-family molecular chaperon regulator-1, BAG1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=4.4e-13  Score=110.30  Aligned_cols=97  Identities=25%  Similarity=0.370  Sum_probs=77.8

Q ss_pred             chHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhhhHHHHHH-------HHHhCCCcchhhHhhHHHHHHHHHHhccCC--
Q 018493          129 SQEKRLLEMRKNAKLEKASKSISEISLEVDRLAGQVSALES-------IITKGGKVAEKDVLNLIELLMNQLLKLDGI--  199 (355)
Q Consensus       129 s~E~~~~e~kk~k~ieka~~aIs~V~~eVDkLa~ev~~LE~-------~I~~g~Kv~eke~~~LsE~LMq~LLKLD~I--  199 (355)
                      ++++. .++++..++++   ++..+...++.|..++..||+       ...+..|+ ++++..++|.+|+.|++||++  
T Consensus         3 ~PeEe-~~LK~l~~~ek---~v~~~~kkL~~l~~eL~giekGFL~~~l~~ea~~kl-~krik~~~E~~Mk~LE~LDsl~l   77 (112)
T d1hx1b_           3 SPQEE-VELKKLKHLEK---SVEKIADQLEELNKELTGIQQGFLPKDLQAEALCKL-DRRVKATIEQFMKILEEIDTLIL   77 (112)
T ss_dssp             CHHHH-HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             ChHHH-HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhccC
Confidence            45555 55655555555   555666677777788888877       34456777 999999999999999999999  


Q ss_pred             -CCChhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 018493          200 -MADGDVKLQRKMQVRRVQKYVETLDMLKIKN  230 (355)
Q Consensus       200 -eaeGdaR~qRK~~VkrVQ~~Le~LD~lk~~n  230 (355)
                       +.+.++|..||.+|++||.+|.++|.+.++.
T Consensus        78 p~~~~~~R~kRK~lV~~iQ~~L~q~D~l~~~i  109 (112)
T d1hx1b_          78 PENFKDSRLKRKGLVKKVQAFLAECDTVEQNI  109 (112)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence             4455999999999999999999999999764

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.6e-13  Score=111.81  Aligned_cols=64  Identities=17%  Similarity=0.188  Sum_probs=61.3

Q ss_pred             eEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCC
Q 018493           56 IRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKS  119 (355)
Q Consensus        56 I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgS  119 (355)
                      |.|+|+++..++.++|.+++||.+||++|++.+||++++|+|||+|+.|+|+.+|++|||.+++
T Consensus         2 ifv~i~~~k~Ti~l~v~~~~TV~~lK~~I~~~~gip~~~QrLi~~Gk~L~D~~TL~dYgI~~~~   65 (103)
T d2c9wb1           2 VFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQT   65 (103)
T ss_dssp             EEEEEEEBTEEEEEEECTTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTT
T ss_pred             EEEEEeCCCEEEEEEeCCCCcHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCccc
Confidence            7899999999999999999999999999999999999999999999999999999999997665

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.40  E-value=2.9e-13  Score=108.25  Aligned_cols=75  Identities=16%  Similarity=0.127  Sum_probs=66.8

Q ss_pred             CCeeEEEEEeCC--EEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCc-------ccCCchhhhhcCCCCCCEEEE
Q 018493           53 PPTIRVRVKYGS--IYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDK-------ERDSKAFLDVVGVKDKSKLVL  123 (355)
Q Consensus        53 ~~~I~V~VK~gg--~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK-------~ldD~~tLs~~GIKdgSkImL  123 (355)
                      ...|.|.|++..  ..++..|+++.||.+||++|+..+|+|++.|+|+|.|+       .++|+.+|.+|||.+|++|||
T Consensus         5 ss~v~v~I~s~~~~~~~E~r~~~~~TV~~LK~kle~~tGip~~~qrL~~~~~~~~~~~~l~~d~~~L~~y~i~dg~~ihl   84 (95)
T d1v6ea_           5 SSGVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHV   84 (95)
T ss_dssp             CCCEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEE
T ss_pred             CCcEEEEEEECCCCcEEEEEeCCCCCHHHHHHHHHHHhCcCchhEEEEEeCCCCceeecccCCcCCHHHCCCCCCCEEEE
Confidence            456888888853  45788899999999999999999999999999999998       478999999999999999999


Q ss_pred             eecC
Q 018493          124 VEDP  127 (355)
Q Consensus       124 v~~p  127 (355)
                      +...
T Consensus        85 vd~~   88 (95)
T d1v6ea_          85 IDHS   88 (95)
T ss_dssp             BCCS
T ss_pred             EeCC
Confidence            9653

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=8.7e-13  Score=104.94  Aligned_cols=75  Identities=25%  Similarity=0.173  Sum_probs=63.1

Q ss_pred             CCeeEEEEEeC---CEEEEEEEcCCCCHHHHHHHHhccc--CCCccCcEEeccCcccCCchhhhhcCCCCCC--EEEEee
Q 018493           53 PPTIRVRVKYG---SIYHEIHINSQATFGELKKLLTGPT--GLHHEDQKLIYKDKERDSKAFLDVVGVKDKS--KLVLVE  125 (355)
Q Consensus        53 ~~~I~V~VK~g---g~~~~V~V~~~sTVgdLK~~I~e~T--GVppe~QKLIykGK~ldD~~tLs~~GIKdgS--kImLv~  125 (355)
                      ...|+|+||.-   ...+.+++++++||.+||++|++..  .+|+++|||||+||.|+|+.+|++|+++.++  +|||+-
T Consensus         5 s~~i~l~Ik~~~~~~~~~~~~v~~~~TV~~LK~~I~~~~~~~~~~~~qrLIy~Gk~L~D~~~L~d~~~~~~~~~viHLV~   84 (93)
T d1wgda_           5 SSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVC   84 (93)
T ss_dssp             SCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEEC
T ss_pred             CCcEEEEEECCCCCceeEEEEcCCCCcHHHHHHHHHHHcCCCCChHHEEEEECCeEccCCCCHHHhCcccCCCCEEEEEe
Confidence            34588888863   2357889999999999999999985  5999999999999999999999999876554  899986


Q ss_pred             cC
Q 018493          126 DP  127 (355)
Q Consensus       126 ~p  127 (355)
                      .+
T Consensus        85 ~~   86 (93)
T d1wgda_          85 NV   86 (93)
T ss_dssp             CC
T ss_pred             cC
Confidence            43

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.34  E-value=2.1e-12  Score=103.27  Aligned_cols=76  Identities=14%  Similarity=0.163  Sum_probs=65.9

Q ss_pred             CCCCCeeEEEEEeC----CEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcc-------c-CCchhhhhcCCCC
Q 018493           50 SAPPPTIRVRVKYG----SIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKE-------R-DSKAFLDVVGVKD  117 (355)
Q Consensus        50 ~~~~~~I~V~VK~g----g~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~-------l-dD~~tLs~~GIKd  117 (355)
                      ++.+..|+|+|+..    ...+++.|+.++||++||.+|+..+|||+++|+|+|.|+.       + +|+.+|..|||++
T Consensus         4 ~ss~~~iti~i~~~~~~~~~~~~~kv~~~~TV~~LK~~i~~~~gip~~~qrL~y~~~~~~~~~~~l~~d~~tL~~YgI~d   83 (97)
T d1wjna_           4 GSSGQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVEN   83 (97)
T ss_dssp             CSSSCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCT
T ss_pred             CcCCCeEEEEEEeCCCCCCceEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEecCCCCCcccceecCCCcCHhhccCCC
Confidence            34566788888763    4667899999999999999999999999999999999983       3 4789999999999


Q ss_pred             CCEEEEee
Q 018493          118 KSKLVLVE  125 (355)
Q Consensus       118 gSkImLv~  125 (355)
                      |++|+|..
T Consensus        84 g~~I~V~~   91 (97)
T d1wjna_          84 GDCLLVRW   91 (97)
T ss_dssp             TCEEEEEC
T ss_pred             CCEEEEEe
Confidence            99999875

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

Probab=99.32  E-value=1.5e-12  Score=100.08  Aligned_cols=73  Identities=12%  Similarity=0.185  Sum_probs=69.6

Q ss_pred             CCeeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493           53 PPTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        53 ~~~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~  125 (355)
                      ...|+|+|+.++..+.+.|..++++..|++.+++..|+++++++|+|.|+.++++.++.+|||++|++|.++-
T Consensus         2 ~~~I~ikv~~~~~~~~f~v~~~~~~~~l~~~~~~~~~i~~~~~~l~f~G~~l~~~~T~~~~~i~dgd~I~v~~   74 (79)
T d1euvb_           2 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR   74 (79)
T ss_dssp             CSEEEEEEESSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEE
T ss_pred             CcEEEEEECCCCeEEEEEECCCCcHHHHHHHHHHHhCCChHhEEEEECCEEeCCCCCHHHCCCCCCCEEEEEE
Confidence            4579999999888888999999999999999999999999999999999999999999999999999999985

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.29  E-value=2.7e-12  Score=101.41  Aligned_cols=75  Identities=17%  Similarity=0.170  Sum_probs=65.4

Q ss_pred             CeeEEEEEeCCEE--EEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCc-------ccCCchhhhhcCCCCCCEEEEe
Q 018493           54 PTIRVRVKYGSIY--HEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDK-------ERDSKAFLDVVGVKDKSKLVLV  124 (355)
Q Consensus        54 ~~I~V~VK~gg~~--~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK-------~ldD~~tLs~~GIKdgSkImLv  124 (355)
                      ..+.|.|.+....  .+..|+.+.||++||.+|+..+|+|+..|+|+|.|+       ..+|+.+|.+|||++|++|||+
T Consensus         3 ~~~~l~it~~~t~~~~E~r~~~~~TV~~LK~kle~~~Gip~~~q~L~~~~~~~~~~~~l~dd~~~L~~ygi~dG~~Ihvv   82 (90)
T d1t0ya_           3 EVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAV   82 (90)
T ss_dssp             CEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEE
T ss_pred             cEEEEEEEECCCccEEEEecCCCCCHHHHHHHHHHHHCCChhheEEEEeCCCCCcccccccCCCCHHHCCCCCCCEEEEE
Confidence            3578888886554  466789999999999999999999999999999997       3678999999999999999999


Q ss_pred             ecCC
Q 018493          125 EDPI  128 (355)
Q Consensus       125 ~~p~  128 (355)
                      ....
T Consensus        83 d~~~   86 (90)
T d1t0ya_          83 DVTG   86 (90)
T ss_dssp             ECTT
T ss_pred             eCCC
Confidence            7543

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.10  E-value=1.6e-11  Score=98.48  Aligned_cols=56  Identities=21%  Similarity=0.287  Sum_probs=50.3

Q ss_pred             EcCCCCHHHHHHHHhccc--CCC-ccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493           71 INSQATFGELKKLLTGPT--GLH-HEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED  126 (355)
Q Consensus        71 V~~~sTVgdLK~~I~e~T--GVp-pe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~  126 (355)
                      ++...||.+||+.|+...  ++| |++|||||+||.|+|+.+|++|||++|++|+|+.+
T Consensus        34 ~~~~~tV~~lK~~i~~~~~~~~P~p~~~rLIy~Gk~L~D~~tL~~y~I~~gstihLV~r   92 (94)
T d1x1ma1          34 SLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGSTVHVLRK   92 (94)
T ss_dssp             CCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCTTCEEEEEES
T ss_pred             CCCccCHHHHHHHHHHHcccCCCChhheEEEECCeEECCCccHHHcCCCCCCEEEEEEe
Confidence            456789999999998875  455 69999999999999999999999999999999974

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=7.9e-10  Score=84.19  Aligned_cols=71  Identities=10%  Similarity=0.207  Sum_probs=66.7

Q ss_pred             eeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEee
Q 018493           55 TIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        55 ~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~  125 (355)
                      .|+|+|+. .+..+.+.|..++++..|+...++..|+++++++|+|.|+.++++.|+.+||+++|++|.++.
T Consensus         2 ~I~ikv~~~dg~~v~f~v~~~t~l~kl~~~y~~~~~~~~~~~~f~fdG~~l~~~~T~~~l~~edgD~Idv~~   73 (77)
T d2uyzb1           2 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQ   73 (77)
T ss_dssp             EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEE
T ss_pred             EEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCChhHEEEEECCEECCCCCCHHHcCCCCCCEEEEEE
Confidence            58899987 567788999999999999999999999999999999999999999999999999999999875

>d1wf9a1 d.15.1.1 (A:8-101) NPL4-like protein 1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NPL4-like protein 1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.22  E-value=9e-07  Score=70.14  Aligned_cols=69  Identities=16%  Similarity=0.200  Sum_probs=53.1

Q ss_pred             EEEEeCCEEEEEEEcC-CCCHHHHHHHHhcccCCCccCcEEec-------------cCc--ccCCchhhhhcCCCCCCEE
Q 018493           58 VRVKYGSIYHEIHINS-QATFGELKKLLTGPTGLHHEDQKLIY-------------KDK--ERDSKAFLDVVGVKDKSKL  121 (355)
Q Consensus        58 V~VK~gg~~~~V~V~~-~sTVgdLK~~I~e~TGVppe~QKLIy-------------kGK--~ldD~~tLs~~GIKdgSkI  121 (355)
                      |+|.....++-|+|+. ..||++||..|++..+||.+.|.|--             .+-  ..+|..+|++|||.+||.|
T Consensus         3 iRiRsrdG~eRv~v~~~~~Tl~~LK~~Ie~~L~VPv~~Q~LSl~~~llL~k~P~~~~~~~~l~d~~~~L~sl~i~hGsiv   82 (94)
T d1wf9a1           3 LRVRSRDGLERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHGSMV   82 (94)
T ss_dssp             EEEECSSCEEEEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTTCEE
T ss_pred             EEEEecCCceEEEecCCCCcHHHHHHHHHHHhCCCcccceeecChhhhccCCccccchhhhccCCccCHHHcCccCceEE
Confidence            3344433456677864 78999999999999999999999832             122  2567788999999999999


Q ss_pred             EEeec
Q 018493          122 VLVED  126 (355)
Q Consensus       122 mLv~~  126 (355)
                      +|.-+
T Consensus        83 yL~y~   87 (94)
T d1wf9a1          83 YLAYE   87 (94)
T ss_dssp             ECCCS
T ss_pred             EEEee
Confidence            99753

>d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=4.6e-06  Score=62.29  Aligned_cols=69  Identities=12%  Similarity=0.206  Sum_probs=63.3

Q ss_pred             eEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEe
Q 018493           56 IRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLV  124 (355)
Q Consensus        56 I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv  124 (355)
                      |+|+|+. .+..+.+.|..++++..|....++..|+++...+|+|.|..++.+.|..++|+.+|+.|-+-
T Consensus         2 I~lkv~~~~g~~v~f~vk~~t~l~kl~~~y~~~~~~~~~~~~f~fdG~~i~~~~Tp~~l~med~D~Idv~   71 (72)
T d1wm3a_           2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF   71 (72)
T ss_dssp             EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred             EEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence            7788886 45778899999999999999999999999999999999999999999999999999998663

>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Tether containing UBX domain for GLUT4 (Tug)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.74  E-value=0.0018  Score=49.08  Aligned_cols=64  Identities=9%  Similarity=0.125  Sum_probs=60.0

Q ss_pred             CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEeccCcccCCchhhhhcCCCCCCEEEEeec
Q 018493           63 GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYKDKERDSKAFLDVVGVKDKSKLVLVED  126 (355)
Q Consensus        63 gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIykGK~ldD~~tLs~~GIKdgSkImLv~~  126 (355)
                      .+....|.|.|.+|+.++-+..+++.|+.+++--|.|++|.+|-+.+++-.|+-+|++|-|+..
T Consensus         9 ~~rR~~VKvtP~t~l~~VL~eaC~k~~~~~~~~~Lkh~~k~ldLsl~~R~sgLpnnakLELv~~   72 (76)
T d2al3a1           9 NGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPV   72 (76)
T ss_dssp             TSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECS
T ss_pred             CCcEEEEEeCCCcCHHHHHHHHHHHhCCChhHceeeeCCEEcCccceeeecCCCCCCEEEEEEc
Confidence            4566789999999999999999999999999999999999999999999999999999999864

>d1h8ca_ d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Fas-associated factor 1, Faf1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.18  E-value=0.0083  Score=44.74  Aligned_cols=72  Identities=15%  Similarity=0.278  Sum_probs=57.6

Q ss_pred             CCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEe--ccCccc---CCchhhhhcCCCCCCEEEEee
Q 018493           53 PPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLI--YKDKER---DSKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        53 ~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLI--ykGK~l---dD~~tLs~~GIKdgSkImLv~  125 (355)
                      .+.++|.|+. +|....-.+++++|+.+|..-|.. .+.++....|+  |-.+.+   |++.+|.++|+-+.+.|+|=+
T Consensus         3 e~~~~i~iRlPdG~~~~~~F~~~~tl~~v~~~v~~-~~~~~~~~~l~~~~Pr~~l~~~d~~~TL~e~gL~p~~~L~vq~   80 (82)
T d1h8ca_           3 EPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA   80 (82)
T ss_dssp             CCCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHH-HTCCSSSEEEEETTTTEETTTCCTTSBHHHHCCCSEEEEEEEE
T ss_pred             CCcEEEEEECCCCCEEEEEECCCCcHHHHHHHHHh-cCCCCCceEEEecCcccccccccccCCHHHCCCCCCCEEEEEe
Confidence            4566777775 456677789999999999999987 47788888887  666664   567899999999999888743

>d2cr5a1 d.15.1.2 (A:8-103) UBX domain-containing protein 6 (Reproduction 8) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: UBX domain-containing protein 6 (Reproduction 8)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.55  E-value=0.084  Score=39.91  Aligned_cols=73  Identities=12%  Similarity=0.141  Sum_probs=55.8

Q ss_pred             CCCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEe--ccCccc--CCchhhhhcCCCCCCEEEEee
Q 018493           52 PPPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLI--YKDKER--DSKAFLDVVGVKDKSKLVLVE  125 (355)
Q Consensus        52 ~~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLI--ykGK~l--dD~~tLs~~GIKdgSkImLv~  125 (355)
                      ..+.++|.|+. +|.++.-.+..++||.+|..-|... +.......|+  |-.+.+  +.+.+|.++||.+...|+|-.
T Consensus        13 ~~~~~~i~iRlPdG~r~~r~F~~~dtl~~l~~fv~~~-~~~~~~f~l~~~~Pr~~~~~d~~~TL~e~gl~p~~~L~v~~   90 (96)
T d2cr5a1          13 AEEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE   90 (96)
T ss_dssp             CSSEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred             CCCeEEEEEECCCCCEEEEEECCcccHHHHHHHHHHh-ccCcccceeecCCCceecCccCCCcHHHCCCCCCCEEEEec
Confidence            34578888886 4677788899999999999999765 4455667776  333443  557899999999998888764

>d1i42a_ d.15.1.2 (A:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: p47
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.12  E-value=0.054  Score=40.88  Aligned_cols=69  Identities=13%  Similarity=0.229  Sum_probs=52.3

Q ss_pred             CCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcc-cCCCccCcEEecc--Cccc-CCchhhhhcCCCCCCEEE
Q 018493           53 PPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGP-TGLHHEDQKLIYK--DKER-DSKAFLDVVGVKDKSKLV  122 (355)
Q Consensus        53 ~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~-TGVppe~QKLIyk--GK~l-dD~~tLs~~GIKdgSkIm  122 (355)
                      .|..+|.|+. +|......+++++||++|.+-|... .+.+.....|+..  -|.+ +++.+|.++|+.+. .|+
T Consensus        12 ~p~t~I~iRlPdG~~~~~~F~~~~tl~dv~~~v~~~~~~~~~~~f~L~t~~Prr~l~d~~~TL~e~gL~~s-~vl   85 (89)
T d1i42a_          12 EPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNA-VIV   85 (89)
T ss_dssp             SCCEEEEEEETTTCCEEEEECSSSCGGGHHHHHHHHCTTTSSCCEEEEETTTTEECCCCSSCSGGGTTCCS-EEE
T ss_pred             CCcEEEEEEcCCCCEEEEEECCchhHHHHHHHHHHhCccCCCCCEEEecCCCCcccCCCcCcHHHCCCcCc-eEE
Confidence            4566777775 4567888999999999999999775 4666777888754  3444 77899999999964 443

>d1vjka_ d.15.3.1 (A:) Molybdopterin synthase subunit MoaD {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: MoaD
domain: Molybdopterin synthase subunit MoaD
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.95  E-value=0.14  Score=37.63  Aligned_cols=66  Identities=18%  Similarity=0.213  Sum_probs=47.0

Q ss_pred             eeEEEEEe--------CCEEEEEEEcCCCCHHHHHHHHhcccCC-----------CccCcEEeccCcccCCchhhhhcCC
Q 018493           55 TIRVRVKY--------GSIYHEIHINSQATFGELKKLLTGPTGL-----------HHEDQKLIYKDKERDSKAFLDVVGV  115 (355)
Q Consensus        55 ~I~V~VK~--------gg~~~~V~V~~~sTVgdLK~~I~e~TGV-----------ppe~QKLIykGK~ldD~~tLs~~GI  115 (355)
                      +|+|+|++        |.....++++..+||++|.+.|.+..+-           .....++..+|+..++     ++-|
T Consensus         1 smkI~v~~Fa~lre~~G~~~~~~~~~~~~Tv~~l~~~L~~~~~~~~~~l~~~~~~~~~~i~iavN~~~~~~-----d~~L   75 (88)
T d1vjka_           1 SVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEEL   75 (88)
T ss_dssp             CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBC
T ss_pred             CeEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHChHHHHHhhhccccccccEEEEEcceEcCC-----CcCc
Confidence            46788886        5567788999999999999999876431           1123445566666544     3458


Q ss_pred             CCCCEEEEee
Q 018493          116 KDKSKLVLVE  125 (355)
Q Consensus       116 KdgSkImLv~  125 (355)
                      ++|+.|-++.
T Consensus        76 ~~gDevai~P   85 (88)
T d1vjka_          76 KDGDVVGVFP   85 (88)
T ss_dssp             CTTCEEEEES
T ss_pred             CCCCEEEEeC
Confidence            9999998874

>d1wj4a_ d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Hypothetical protein KIAA0794
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.49  E-value=0.1  Score=41.69  Aligned_cols=75  Identities=19%  Similarity=0.306  Sum_probs=58.5

Q ss_pred             CCCCeeEEEEEe-CCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEe--ccCccc---CCchhhhhcCCCCCCEEEEe
Q 018493           51 APPPTIRVRVKY-GSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLI--YKDKER---DSKAFLDVVGVKDKSKLVLV  124 (355)
Q Consensus        51 ~~~~~I~V~VK~-gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLI--ykGK~l---dD~~tLs~~GIKdgSkImLv  124 (355)
                      ...+..+|.|+. +|.++...|..++||.+|...|... +......+|+  |--+.+   |.+.+|.++||-+...|+|-
T Consensus        39 ~~~p~~~l~iRlPdG~r~~r~F~~~~tl~~l~~~v~~~-~~~~~~~~L~~~fPr~~l~~~d~~~TL~e~gL~P~~~L~ve  117 (124)
T d1wj4a_          39 VNGPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ  117 (124)
T ss_dssp             CSSCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEE
T ss_pred             CCCCceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-ccCCcceEEeecccccccccccccCcHHHcCCCCCCEEEEE
Confidence            345678888886 5677888999999999999999764 5566777777  444444   56789999999999999886


Q ss_pred             ec
Q 018493          125 ED  126 (355)
Q Consensus       125 ~~  126 (355)
                      +.
T Consensus       118 e~  119 (124)
T d1wj4a_         118 ES  119 (124)
T ss_dssp             EC
T ss_pred             ec
Confidence            54

>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Bud emergence mediator Bemp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.81  E-value=0.11  Score=38.99  Aligned_cols=48  Identities=17%  Similarity=0.245  Sum_probs=41.2

Q ss_pred             CCCCeeEEEEEeCCEEEEEEEcCCCCHHHHHHHHhcccCCCccCcEEecc
Q 018493           51 APPPTIRVRVKYGSIYHEIHINSQATFGELKKLLTGPTGLHHEDQKLIYK  100 (355)
Q Consensus        51 ~~~~~I~V~VK~gg~~~~V~V~~~sTVgdLK~~I~e~TGVppe~QKLIyk  100 (355)
                      .....|+|++.+++..+-+.|+++.++.+|+++|...+++.  ..+|-|+
T Consensus         8 ~~~~~ikVKv~~~~D~~~~~l~~~it~~dL~~kI~~rf~~~--~~~lkY~   55 (85)
T d1ip9a_           8 SGLKTTKIKFYYKDDIFALMLKGDTTYKELRSKIAPRIDTD--NFKLQTK   55 (85)
T ss_dssp             CCCCCEEEEECBTTCCEEEEECSCCCHHHHHHHHHHHHTSS--CEEEEEC
T ss_pred             CCCCCEEEEEEECCcEEEEEeCCCCCHHHHHHHHHHHhCCC--ceEEEEE
Confidence            44567999999999999999999999999999999999864  4666665

>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Next to BRCA1 gene 1 protein, NBR1 (KIAA0049)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.80  E-value=0.48  Score=35.92  Aligned_cols=39  Identities=10%  Similarity=0.277  Sum_probs=33.2

Q ss_pred             CCeeEEEEEeCCEEEEEE--EcCCCCHHHHHHHHhcccCCC
Q 018493           53 PPTIRVRVKYGSIYHEIH--INSQATFGELKKLLTGPTGLH   91 (355)
Q Consensus        53 ~~~I~V~VK~gg~~~~V~--V~~~sTVgdLK~~I~e~TGVp   91 (355)
                      .|.|+|+|.+++.+..+.  ++...++.+|+.+|....++.
T Consensus         2 ep~vtvKvtf~~dt~RF~ls~~~~~~~~~L~~~i~~rf~l~   42 (85)
T d2bkfa1           2 EPQVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN   42 (85)
T ss_dssp             CCCEEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCS
T ss_pred             CccEEEEEEECCceEEEEecCCCCCcHHHHHHHHHHhcCcc
Confidence            478999999999886554  456789999999999999985

>d1xo3a_ d.15.3.3 (A:) C9orf74 homolog {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: C9orf74 homolog
domain: C9orf74 homolog
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.11  E-value=1.1  Score=33.91  Aligned_cols=70  Identities=13%  Similarity=0.247  Sum_probs=42.6

Q ss_pred             CeeEEEEEeCC---------EEEEEEEcCC---CCHHHHHHHHhcccCCCccCcEEeccC-c------c-cCCc--hhhh
Q 018493           54 PTIRVRVKYGS---------IYHEIHINSQ---ATFGELKKLLTGPTGLHHEDQKLIYKD-K------E-RDSK--AFLD  111 (355)
Q Consensus        54 ~~I~V~VK~gg---------~~~~V~V~~~---sTVgdLK~~I~e~TGVppe~QKLIykG-K------~-ldD~--~tLs  111 (355)
                      +.|+|+|++.|         +.+.+.++..   .||++|-+.|.+...-.-  -.|+..+ .      + ..+.  ..|.
T Consensus         3 ~~m~V~V~F~g~L~~lf~~~r~~~v~l~~~~~~~TV~dll~~L~~~~p~~~--~~l~~~~~~lr~~v~v~vN~~di~~l~   80 (101)
T d1xo3a_           3 APLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLLKER--PELFIQGDSVRPGILVLINDADWELLG   80 (101)
T ss_dssp             SSCEEEEEECSSGGGGGTTCCCEEEECCSSSCCCCHHHHHHHHHHHHCCSC--GGGSCCTTSCCSSEEEEETTEEHHHHT
T ss_pred             CCeEEEEEEechHHHHhCCcceEEEEcCCCCCCcCHHHHHHHHHHhCCcch--hhhhccCcCeeeeEEEEEcCcceeccC
Confidence            55678888733         5677887653   699999999987654321  1222111 1      1 1111  2232


Q ss_pred             --hcCCCCCCEEEEee
Q 018493          112 --VVGVKDKSKLVLVE  125 (355)
Q Consensus       112 --~~GIKdgSkImLv~  125 (355)
                        ++-|++|+.|.++-
T Consensus        81 gl~t~l~dgDeV~~~p   96 (101)
T d1xo3a_          81 ELDYQLQDQDSILFIS   96 (101)
T ss_dssp             TTSCCCCTTCEEEEEE
T ss_pred             CCccCcCCCCEEEEeC
Confidence              57899999999874