Citrus Sinensis ID: 018502

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-----
MPLLRRLSSSLQQVVKFTNRSFKSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF
cHHHHHHHHHHHHHHcccccccccccccccccccccccccccEEEEEEccccccHHHHHHHHHHHcccccccccccccccccEEEEEEEEEEccccccHHHHHHHHHHHHHHHcccccEEEccccccccEEEEEEEccccHHHHHHHHHHccccccEEEEEEcccccccccHHHHHHHHccccEEEEcccccHHHHHHHHHHHcccEEEEEcccccccccHHHHHHHHHHHHccccccccccccccccHHHHHHHcccEEEEccccccccccccHHHHHHHHcccEEEccccccccccccccccEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEccccEEEc
cccHEEEcccccHEEEccccccccccccccccccccccccccEEEEEEccccccHHHHHHHHHHHccccEEEccccccccccEEEEEEEEEcccccccHHHHHHHHHHHHHHccccEEEEEEcccccccEEEEEEEccccHHHHHHHHHHccccccEEEEEEEcccccccccHHHHHHHccccEEEEEcccccHHHHHHHHHHcccEEEEHHHccccHHHHHHHHHHHHHHHccccEEEEccccccccHHHHHHccccEEEEEcccccccccccHHHHHHHccccEEEEEEEEcccccccccEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEcccEEEEc
MPLLRRLSSSLQQVVKFTNRsfkslkfpgepiessvsptlthgihvfhcpdeVGIVAKLSECIAsrggnilaadvfvpekknvfysrsefifdpikwpreqmdEDFFKLSKMFNAMRsvvrvpdidpkYKVAVLASKQEHCLVDFLygwqegklpvEITCVisnhdrgpnshVIRFLErhgipyhylcaKENEREEELLELVQNTDFLVLARYmqpvplqkeAYLGYKLLESlsskgsltSYFNMILSGKFLRSYGkdvinihhgllpsfkggkpakQAFDAGVKLIgatshfvteeldagpiIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCelrvlpyemnktvvf
mpllrrlsssLQQVVKFTnrsfkslkfpgePIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSefifdpikwprEQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKsycelrvlpyemnktvvf
MPllrrlssslQQVVKFTNRSFKSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKenereeellelVQNTDFLVLARYMQPVPLQKEAylgyklleslsskgsltsyFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF
***************************************LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMN*****
*******************************************IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF
MPLLRRLSSSLQQVVKFTNRSFKSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF
*PLLRRLSSSLQQVVKFTNR*F*****************LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MPLLRRLSSSLQQVVKFTNRSFKSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query355 2.2.26 [Sep-21-2011]
O34990300 Formyltetrahydrofolate de yes no 0.754 0.893 0.357 2e-47
Q55135284 Formyltetrahydrofolate de N/A no 0.752 0.940 0.355 1e-44
P0A5T6310 Formyltetrahydrofolate de yes no 0.757 0.867 0.342 6e-39
P0A5T7310 Formyltetrahydrofolate de yes no 0.757 0.867 0.342 6e-39
Q03432278 Formyltetrahydrofolate de yes no 0.729 0.931 0.338 5e-34
Q46339286 Formyltetrahydrofolate de N/A no 0.763 0.947 0.323 7e-34
P0A441280 Formyltetrahydrofolate de yes no 0.726 0.921 0.287 2e-32
P0A440280 Formyltetrahydrofolate de yes no 0.726 0.921 0.287 2e-32
P37051280 Formyltetrahydrofolate de N/A no 0.726 0.921 0.287 2e-32
P218721003 Trifunctional purine bios yes no 0.515 0.182 0.3 6e-14
>sp|O34990|PURU_BACSU Formyltetrahydrofolate deformylase OS=Bacillus subtilis (strain 168) GN=purU PE=3 SV=2 Back     alignment and function desciption
 Score =  189 bits (481), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 112/313 (35%), Positives = 171/313 (54%), Gaps = 45/313 (14%)

Query: 49  CPDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFF 107
           CPD+ GIV+ +S  +   G NI+ ++ +  + +   F+ R EF    I+  +  +   F 
Sbjct: 26  CPDQPGIVSAVSAFLFEHGANIIESNQYTTDPEGGRFFLRIEFDCAGIREKKSSLQAAFA 85

Query: 108 KLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDR 167
            +++ F+   S+    ++    +VA+  SK+ HCL + ++ WQ G L  EI  VISNH+ 
Sbjct: 86  SVAEKFDMTWSLTLASELK---RVAIFVSKELHCLHELIWEWQTGNLMAEIAVVISNHEE 142

Query: 168 GPNSHVIRFLERHGIPYHYLCAKENER---EEELLELVQ--NTDFLVLARYMQPVPLQKE 222
                    +ER  IP+HY+ A ++ R   E++ LEL++  + D +VLARYMQ       
Sbjct: 143 AR-----ELVERLNIPFHYMKANKDIRAEVEKKQLELLEQYDVDVIVLARYMQ------- 190

Query: 223 AYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDA 282
                                  IL+  F+ ++   +INIHH  LP+F G  P K+A++ 
Sbjct: 191 -----------------------ILTPDFVSAHPNRIINIHHSFLPAFIGANPYKRAYER 227

Query: 283 GVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCEL 342
           GVKLIGATSH+VT +LD GPIIEQ +ERV HRDN          +E+  LA+A+K + E 
Sbjct: 228 GVKLIGATSHYVTNDLDEGPIIEQDIERVDHRDNAEALKNIGRTIERSVLARAVKWHLED 287

Query: 343 RVLPYEMNKTVVF 355
           RV+ +E NKT+VF
Sbjct: 288 RVIVHE-NKTIVF 299

Bacillus subtilis (strain 168) (taxid: 224308)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 1EC: 0
>sp|Q55135|PURU_SYNY3 Formyltetrahydrofolate deformylase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=purU PE=3 SV=1 Back     alignment and function description
>sp|P0A5T6|PURU_MYCTU Formyltetrahydrofolate deformylase OS=Mycobacterium tuberculosis GN=purU PE=3 SV=1 Back     alignment and function description
>sp|P0A5T7|PURU_MYCBO Formyltetrahydrofolate deformylase OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=purU PE=3 SV=1 Back     alignment and function description
>sp|Q03432|PURU_HAEIN Formyltetrahydrofolate deformylase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=purU PE=3 SV=2 Back     alignment and function description
>sp|Q46339|PURU_CORS1 Formyltetrahydrofolate deformylase OS=Corynebacterium sp. (strain P-1) GN=purU PE=3 SV=1 Back     alignment and function description
>sp|P0A441|PURU_SHIFL Formyltetrahydrofolate deformylase OS=Shigella flexneri GN=purU PE=3 SV=1 Back     alignment and function description
>sp|P0A440|PURU_ECOL6 Formyltetrahydrofolate deformylase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=purU PE=3 SV=1 Back     alignment and function description
>sp|P37051|PURU_ECOLI Formyltetrahydrofolate deformylase OS=Escherichia coli (strain K12) GN=purU PE=1 SV=1 Back     alignment and function description
>sp|P21872|PUR2_CHICK Trifunctional purine biosynthetic protein adenosine-3 OS=Gallus gallus GN=GART PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query355
359495984329 PREDICTED: formyltetrahydrofolate deform 0.915 0.987 0.738 1e-151
449458970326 PREDICTED: formyltetrahydrofolate deform 0.915 0.996 0.702 1e-144
224074167317 formyltetrahydrofolate deformylase [Popu 0.873 0.977 0.716 1e-143
358248700316 uncharacterized protein LOC100780134 [Gl 0.887 0.996 0.705 1e-142
356563338316 PREDICTED: formyltetrahydrofolate deform 0.887 0.996 0.699 1e-141
224138620317 formyltetrahydrofolate deformylase [Popu 0.833 0.933 0.715 1e-137
357502477324 Formyltetrahydrofolate deformylase [Medi 0.898 0.984 0.690 1e-137
388513597322 unknown [Medicago truncatula] 0.898 0.990 0.690 1e-137
217071818324 unknown [Medicago truncatula] 0.898 0.984 0.690 1e-137
89257492332 formyltetrahydrofolate deformylase, puta 0.845 0.903 0.706 1e-136
>gi|359495984|ref|XP_003635126.1| PREDICTED: formyltetrahydrofolate deformylase-like [Vitis vinifera] gi|297744389|emb|CBI37363.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  541 bits (1394), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 265/359 (73%), Positives = 294/359 (81%), Gaps = 34/359 (9%)

Query: 1   MPLLRRLSSSLQQVVKFTNRSFKSLKFPGEPI---ESSVSPTLTHGIHVFHCPDEVGIVA 57
           M L RRLS+SL Q++ FTNRSFKSLKFP + +    SS   +L HGIHVFHCPD VGIVA
Sbjct: 1   MSLRRRLSTSLPQLLGFTNRSFKSLKFPQQSLHCFNSSSESSLAHGIHVFHCPDGVGIVA 60

Query: 58  KLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR 117
           KLS+CIASRGGNIL AD+FVPE K VFYSRSEFIFDP KWPR QMDEDF KLS MFNAM+
Sbjct: 61  KLSDCIASRGGNILGADIFVPENKKVFYSRSEFIFDPAKWPRAQMDEDFLKLSNMFNAMK 120

Query: 118 SVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFL 177
           SVVRVP +DPKYK++VLASKQ+HCLVD L+GWQ+G+LPV+ITCVISNHDRGPN+HV RFL
Sbjct: 121 SVVRVPILDPKYKISVLASKQDHCLVDLLHGWQDGRLPVDITCVISNHDRGPNTHVFRFL 180

Query: 178 ERHGIPYHYL-CAKENEREEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSK 236
           ERHGIPYHYL   KEN+RE E+L+LVQ+TDFLVLARYMQ                     
Sbjct: 181 ERHGIPYHYLHTTKENKREGEILDLVQDTDFLVLARYMQ--------------------- 219

Query: 237 GSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTE 296
                    ILSG FL+SYGKD+INIHHGLLPSFKGG P+KQAFDAGVKLIGATSHFVTE
Sbjct: 220 ---------ILSGNFLKSYGKDIINIHHGLLPSFKGGNPSKQAFDAGVKLIGATSHFVTE 270

Query: 297 ELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF 355
           ELDAGPII QMVERV HRDNL++FVQKSE++EKQCL KAIKSYCELRVLPYE NKTVVF
Sbjct: 271 ELDAGPIIGQMVERVCHRDNLKSFVQKSENLEKQCLVKAIKSYCELRVLPYEDNKTVVF 329

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449458970|ref|XP_004147219.1| PREDICTED: formyltetrahydrofolate deformylase-like [Cucumis sativus] gi|449504944|ref|XP_004162337.1| PREDICTED: formyltetrahydrofolate deformylase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224074167|ref|XP_002304283.1| formyltetrahydrofolate deformylase [Populus trichocarpa] gi|222841715|gb|EEE79262.1| formyltetrahydrofolate deformylase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|358248700|ref|NP_001240181.1| uncharacterized protein LOC100780134 [Glycine max] gi|255636588|gb|ACU18632.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356563338|ref|XP_003549921.1| PREDICTED: formyltetrahydrofolate deformylase-like [Glycine max] Back     alignment and taxonomy information
>gi|224138620|ref|XP_002326648.1| formyltetrahydrofolate deformylase [Populus trichocarpa] gi|222833970|gb|EEE72447.1| formyltetrahydrofolate deformylase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357502477|ref|XP_003621527.1| Formyltetrahydrofolate deformylase [Medicago truncatula] gi|355496542|gb|AES77745.1| Formyltetrahydrofolate deformylase [Medicago truncatula] Back     alignment and taxonomy information
>gi|388513597|gb|AFK44860.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|217071818|gb|ACJ84269.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|89257492|gb|ABD64983.1| formyltetrahydrofolate deformylase, putative [Brassica oleracea] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query355
TAIR|locus:2130893328 AT4G17360 [Arabidopsis thalian 0.560 0.606 0.675 9.4e-122
TAIR|locus:505006677323 AT5G47435 [Arabidopsis thalian 0.543 0.597 0.664 5.1e-121
TIGR_CMR|DET_1237284 DET_1237 "formyltetrahydrofola 0.312 0.390 0.392 5.1e-39
UNIPROTKB|G4MX54284 MGG_08008 "Formyltetrahydrofol 0.315 0.394 0.460 8.3e-39
TIGR_CMR|CPS_2482292 CPS_2482 "formyltetrahydrofola 0.315 0.383 0.433 4e-37
TIGR_CMR|CPS_4036292 CPS_4036 "formyltetrahydrofola 0.315 0.383 0.433 4e-37
TIGR_CMR|CPS_4357286 CPS_4357 "formyltetrahydrofola 0.312 0.388 0.419 1e-36
TIGR_CMR|CPS_3620292 CPS_3620 "formyltetrahydrofola 0.315 0.383 0.424 5.7e-36
UNIPROTKB|Q9KQK6277 VC_1992 "Formyltetrahydrofolat 0.304 0.389 0.458 6.3e-35
TIGR_CMR|VC_1992277 VC_1992 "formyltetrahydrofolat 0.304 0.389 0.458 6.3e-35
TAIR|locus:2130893 AT4G17360 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 727 (261.0 bits), Expect = 9.4e-122, Sum P(2) = 9.4e-122
 Identities = 135/200 (67%), Positives = 160/200 (80%)

Query:    17 FTNRSFKSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVF 76
             FT  SFKS +F GE ++SSVSP L  G HVFHCPD VGIVAKLS+CIA++GGNIL  DVF
Sbjct:    19 FTKWSFKSSQFHGESLDSSVSPLLIPGFHVFHCPDVVGIVAKLSDCIAAKGGNILGYDVF 78

Query:    77 VPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLAS 136
             VPE KNVFYSRSEFIFDP+KWPR QMDEDF  +++ F+A+ SVVRVP +DPKYK+A+L S
Sbjct:    79 VPENKNVFYSRSEFIFDPVKWPRRQMDEDFQTIAQKFSALSSVVRVPSLDPKYKIALLLS 138

Query:   137 KQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYL-CAKXXXXX 195
             KQ+HCLV+ L+ WQ+GKLPV+ITCVISNH+R PN+HV+RFL+RHGI YHYL         
Sbjct:   139 KQDHCLVEMLHKWQDGKLPVDITCVISNHERAPNTHVMRFLQRHGISYHYLPTTDQNKIE 198

Query:   196 XXXXXXVQNTDFLVLARYMQ 215
                   V+ TDFLVLARYMQ
Sbjct:   199 EEILELVKGTDFLVLARYMQ 218
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0006189 "'de novo' IMP biosynthetic process" evidence=IEA
GO:0008168 "methyltransferase activity" evidence=IEA
GO:0008864 "formyltetrahydrofolate deformylase activity" evidence=IEA;ISS
GO:0009058 "biosynthetic process" evidence=IEA;ISS
GO:0009152 "purine ribonucleotide biosynthetic process" evidence=ISS
GO:0016742 "hydroxymethyl-, formyl- and related transferase activity" evidence=IEA;ISS
GO:0009853 "photorespiration" evidence=IMP
GO:0046653 "tetrahydrofolate metabolic process" evidence=IMP
GO:0000023 "maltose metabolic process" evidence=RCA
GO:0019252 "starch biosynthetic process" evidence=RCA
GO:0043085 "positive regulation of catalytic activity" evidence=RCA
TAIR|locus:505006677 AT5G47435 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|DET_1237 DET_1237 "formyltetrahydrofolate deformylase" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
UNIPROTKB|G4MX54 MGG_08008 "Formyltetrahydrofolate deformylase" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_2482 CPS_2482 "formyltetrahydrofolate deformylase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_4036 CPS_4036 "formyltetrahydrofolate deformylase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_4357 CPS_4357 "formyltetrahydrofolate deformylase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_3620 CPS_3620 "formyltetrahydrofolate deformylase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KQK6 VC_1992 "Formyltetrahydrofolate deformylase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_1992 VC_1992 "formyltetrahydrofolate deformylase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.5.1.100.824
3rd Layer3.5.10.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query355
PLN02828268 PLN02828, PLN02828, formyltetrahydrofolate deformy 0.0
PRK06027286 PRK06027, purU, formyltetrahydrofolate deformylase 1e-105
cd08648196 cd08648, FMT_core_Formyl-FH4-Hydrolase_C, Formylte 1e-103
COG0788287 COG0788, PurU, Formyltetrahydrofolate hydrolase [N 1e-99
TIGR00655280 TIGR00655, PurU, formyltetrahydrofolate deformylas 3e-83
PRK13011286 PRK13011, PRK13011, formyltetrahydrofolate deformy 1e-74
PRK13010289 PRK13010, purU, formyltetrahydrofolate deformylase 4e-67
cd08645183 cd08645, FMT_core_GART, Phosphoribosylglycinamide 1e-37
COG0299200 COG0299, PurN, Folate-dependent phosphoribosylglyc 1e-33
PRK05647200 PRK05647, purN, phosphoribosylglycinamide formyltr 1e-30
pfam00551181 pfam00551, Formyl_trans_N, Formyl transferase 3e-30
cd08369173 cd08369, FMT_core, Formyltransferase, catalytic co 1e-28
TIGR00639190 TIGR00639, PurN, phosphoribosylglycinamide formylt 2e-25
cd0487574 cd04875, ACT_F4HF-DF, N-terminal ACT domain of for 2e-17
PLN02331207 PLN02331, PLN02331, phosphoribosylglycinamide form 6e-11
cd08653152 cd08653, FMT_core_like_3, Formyl transferase catal 7e-10
COG0223 307 COG0223, Fmt, Methionyl-tRNA formyltransferase [Tr 1e-08
TIGR00460 313 TIGR00460, fmt, methionyl-tRNA formyltransferase 5e-08
cd08644203 cd08644, FMT_core_ArnA_N, ArnA, N-terminal formylt 3e-07
PLN02285 334 PLN02285, PLN02285, methionyl-tRNA formyltransfera 3e-07
cd08823177 cd08823, FMT_core_like_5, Formyl transferase catal 3e-06
PRK08125 660 PRK08125, PRK08125, bifunctional UDP-glucuronic ac 5e-05
PRK06988 312 PRK06988, PRK06988, putative formyltransferase; Pr 5e-05
PRK00005 309 PRK00005, fmt, methionyl-tRNA formyltransferase; R 7e-05
cd08646204 cd08646, FMT_core_Met-tRNA-FMT_N, Methionyl-tRNA f 7e-05
PRK07579245 PRK07579, PRK07579, hypothetical protein; Provisio 1e-04
cd08651180 cd08651, FMT_core_like_4, Formyl transferase catal 0.002
cd0211660 cd02116, ACT, ACT domains are commonly involved in 0.003
>gnl|CDD|178422 PLN02828, PLN02828, formyltetrahydrofolate deformylase Back     alignment and domain information 
 Score =  537 bits (1384), Expect = 0.0
 Identities = 222/298 (74%), Positives = 249/298 (83%), Gaps = 31/298 (10%)

Query: 59  LSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRS 118
           LS+CIASRGGNIL  DVFVPE KNVFYSRSEFIFDP+KWPR QMDEDF ++SK F A++S
Sbjct: 1   LSDCIASRGGNILGVDVFVPENKNVFYSRSEFIFDPVKWPRAQMDEDFQEISKHFKALKS 60

Query: 119 VVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLE 178
           VVRVP +DPKYK+AVLASKQ+HCL+D L+ WQ+G+LPV+ITCVISNH+RGPN+HV+RFLE
Sbjct: 61  VVRVPGLDPKYKIAVLASKQDHCLIDLLHRWQDGRLPVDITCVISNHERGPNTHVMRFLE 120

Query: 179 RHGIPYHYLC-AKENEREEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKG 237
           RHGIPYHYL   KEN+RE+E+LELV+ TDFLVLARYMQ                      
Sbjct: 121 RHGIPYHYLPTTKENKREDEILELVKGTDFLVLARYMQ---------------------- 158

Query: 238 SLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEE 297
                   ILSG FL+ YGKD+INIHHGLLPSFKGG P+KQAFDAGVKLIGATSHFVTEE
Sbjct: 159 --------ILSGNFLKGYGKDIINIHHGLLPSFKGGNPSKQAFDAGVKLIGATSHFVTEE 210

Query: 298 LDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF 355
           LDAGPIIEQMVERVSHRDNLR+FVQKSE++EKQCLAKAIKSYCELRVLPY  NKTVVF
Sbjct: 211 LDAGPIIEQMVERVSHRDNLRSFVQKSENLEKQCLAKAIKSYCELRVLPYGTNKTVVF 268

Length = 268
>gnl|CDD|235676 PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>gnl|CDD|187717 cd08648, FMT_core_Formyl-FH4-Hydrolase_C, Formyltetrahydrofolate deformylase (Formyl-FH4 hydrolase), C-terminal hydrolase domain Back     alignment and domain information
>gnl|CDD|223859 COG0788, PurU, Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism] Back     alignment and domain information
>gnl|CDD|233074 TIGR00655, PurU, formyltetrahydrofolate deformylase Back     alignment and domain information
>gnl|CDD|237266 PRK13011, PRK13011, formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>gnl|CDD|139334 PRK13010, purU, formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>gnl|CDD|187714 cd08645, FMT_core_GART, Phosphoribosylglycinamide formyltransferase (GAR transformylase, GART) Back     alignment and domain information
>gnl|CDD|223376 COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism] Back     alignment and domain information
>gnl|CDD|235544 PRK05647, purN, phosphoribosylglycinamide formyltransferase; Reviewed Back     alignment and domain information
>gnl|CDD|144222 pfam00551, Formyl_trans_N, Formyl transferase Back     alignment and domain information
>gnl|CDD|187712 cd08369, FMT_core, Formyltransferase, catalytic core domain Back     alignment and domain information
>gnl|CDD|161973 TIGR00639, PurN, phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent Back     alignment and domain information
>gnl|CDD|153147 cd04875, ACT_F4HF-DF, N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) Back     alignment and domain information
>gnl|CDD|177965 PLN02331, PLN02331, phosphoribosylglycinamide formyltransferase Back     alignment and domain information
>gnl|CDD|187721 cd08653, FMT_core_like_3, Formyl transferase catalytic core domain found in a group of proteins with unknown functions Back     alignment and domain information
>gnl|CDD|223301 COG0223, Fmt, Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|232983 TIGR00460, fmt, methionyl-tRNA formyltransferase Back     alignment and domain information
>gnl|CDD|187713 cd08644, FMT_core_ArnA_N, ArnA, N-terminal formyltransferase domain Back     alignment and domain information
>gnl|CDD|215159 PLN02285, PLN02285, methionyl-tRNA formyltransferase Back     alignment and domain information
>gnl|CDD|187725 cd08823, FMT_core_like_5, Formyl transferase catalytic core domain found in a group of proteins with unknown functions Back     alignment and domain information
>gnl|CDD|236156 PRK08125, PRK08125, bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated Back     alignment and domain information
>gnl|CDD|235902 PRK06988, PRK06988, putative formyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|234567 PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed Back     alignment and domain information
>gnl|CDD|187715 cd08646, FMT_core_Met-tRNA-FMT_N, Methionyl-tRNA formyltransferase, N-terminal hydrolase domain Back     alignment and domain information
>gnl|CDD|236058 PRK07579, PRK07579, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|187720 cd08651, FMT_core_like_4, Formyl transferase catalytic core domain found in a group of proteins with unknown functions Back     alignment and domain information
>gnl|CDD|153139 cd02116, ACT, ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 355
COG0788287 PurU Formyltetrahydrofolate hydrolase [Nucleotide 100.0
TIGR00655280 PurU formyltetrahydrofolate deformylase. This mode 100.0
PRK13010289 purU formyltetrahydrofolate deformylase; Reviewed 100.0
PLN02828268 formyltetrahydrofolate deformylase 100.0
PRK13011286 formyltetrahydrofolate deformylase; Reviewed 100.0
PRK06027286 purU formyltetrahydrofolate deformylase; Reviewed 100.0
COG0299200 PurN Folate-dependent phosphoribosylglycinamide fo 100.0
KOG3076206 consensus 5'-phosphoribosylglycinamide formyltrans 100.0
PLN02331207 phosphoribosylglycinamide formyltransferase 100.0
TIGR00639190 PurN phosphoribosylglycinamide formyltransferase, 100.0
PRK05647200 purN phosphoribosylglycinamide formyltransferase; 100.0
PLN02285 334 methionyl-tRNA formyltransferase 100.0
PF00551181 Formyl_trans_N: Formyl transferase; InterPro: IPR0 100.0
COG0223 307 Fmt Methionyl-tRNA formyltransferase [Translation, 100.0
PRK06988 312 putative formyltransferase; Provisional 100.0
PRK00005 309 fmt methionyl-tRNA formyltransferase; Reviewed 100.0
TIGR00460 313 fmt methionyl-tRNA formyltransferase. The top-scor 100.0
PRK08125 660 bifunctional UDP-glucuronic acid decarboxylase/UDP 100.0
PRK07579245 hypothetical protein; Provisional 100.0
KOG3082 338 consensus Methionyl-tRNA formyltransferase [Transl 99.81
KOG2452 881 consensus Formyltetrahydrofolate dehydrogenase [Nu 99.78
cd0489377 ACT_GcvR_1 ACT domains that comprise the Glycine C 99.77
COG383090 ACT domain-containing protein [Signal transduction 99.73
cd0487574 ACT_F4HF-DF N-terminal ACT domain of formyltetrahy 99.66
cd0487288 ACT_1ZPV ACT domain proteins similar to the yet un 99.65
PF1374076 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A. 99.61
PRK0019490 hypothetical protein; Validated 99.6
cd0487075 ACT_PSP_1 CT domains found N-terminal of phosphose 99.59
PRK11589190 gcvR glycine cleavage system transcriptional repre 99.57
cd0486981 ACT_GcvR_2 ACT domains that comprise the Glycine C 99.56
PRK11589190 gcvR glycine cleavage system transcriptional repre 99.11
cd0487184 ACT_PSP_2 ACT domains found N-terminal of phosphos 99.03
COG2716176 GcvR Glycine cleavage system regulatory protein [A 98.74
PF0184266 ACT: ACT domain; InterPro: IPR002912 The ACT domai 98.67
cd0492574 ACT_ACR_2 ACT domain-containing protein which is c 98.34
COG2716176 GcvR Glycine cleavage system regulatory protein [A 98.12
PF1329180 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A. 98.11
CHL00100174 ilvH acetohydroxyacid synthase small subunit 97.99
cd0487370 ACT_UUR-ACR-like ACT domains of the bacterial sign 97.96
PRK08577136 hypothetical protein; Provisional 97.89
PRK04435147 hypothetical protein; Provisional 97.81
cd0488673 ACT_ThrD-II-like C-terminal ACT domain of biodegra 97.8
cd0489970 ACT_ACR-UUR-like_2 C-terminal ACT domains of the b 97.8
cd0488876 ACT_PheB-BS C-terminal ACT domain of a small (~147 97.8
cd0487472 ACT_Af1403 N-terminal ACT domain of the yet unchar 97.73
PRK03381774 PII uridylyl-transferase; Provisional 97.66
cd0490969 ACT_PDH-BS C-terminal ACT domain of the monofuncti 97.66
cd0490273 ACT_3PGDH-xct C-terminal ACT (regulatory) domain o 97.65
cd0492868 ACT_TyrKc Uncharacterized, N-terminal ACT domain o 97.65
cd0488774 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te 97.62
cd0488179 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin 97.56
cd0492776 ACT_ACR-like_2 Second ACT domain, of a novel type 97.5
cd0487872 ACT_AHAS N-terminal ACT domain of the Escherichia 97.5
cd0487671 ACT_RelA-SpoT ACT domain found C-terminal of the R 97.46
cd0490073 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, 97.43
cd0487971 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te 97.41
PRK0673776 acetolactate synthase 1 regulatory subunit; Valida 97.31
cd0490371 ACT_LSD C-terminal ACT domain of the L-serine dehy 97.23
cd0488372 ACT_AcuB C-terminal ACT domain of the Bacillus sub 97.19
cd0492672 ACT_ACR_4 C-terminal ACT domain, of a novel type o 97.18
PRK11895161 ilvH acetolactate synthase 3 regulatory subunit; R 97.1
cd0489775 ACT_ACR_3 ACT domain-containing protein which is c 97.1
cd0488956 ACT_PDH-BS-like C-terminal ACT domain of the monof 97.07
cd0490169 ACT_3PGDH C-terminal ACT (regulatory) domain of D- 97.04
cd0487774 ACT_TyrR N-terminal ACT domain of the TyrR protein 97.03
cd0211660 ACT ACT domains are commonly involved in specifica 97.02
PRK1115276 ilvM acetolactate synthase 2 regulatory subunit; P 97.01
TIGR01693850 UTase_glnD [Protein-PII] uridylyltransferase. This 97.01
cd0488472 ACT_CBS C-terminal ACT domain of the cystathionine 97.01
cd0489572 ACT_ACR_1 ACT domain-containing protein which is c 96.98
cd0488265 ACT_Bt0572_2 C-terminal ACT domain of a novel prot 96.91
PRK1356284 acetolactate synthase 1 regulatory subunit; Provis 96.9
TIGR00119157 acolac_sm acetolactate synthase, small subunit. ac 96.84
TIGR00719208 sda_beta L-serine dehydratase, iron-sulfur-depende 96.79
cd0490580 ACT_CM-PDT C-terminal ACT domain of the bifunction 96.72
PRK0817896 acetolactate synthase 1 regulatory subunit; Review 96.68
cd0490866 ACT_Bt0572_1 N-terminal ACT domain of a novel prot 96.67
cd0489469 ACT_ACR-like_1 ACT domain-containing protein which 96.52
cd0488075 ACT_AAAH-PDT-like ACT domain of the nonheme iron-d 96.51
cd0489675 ACT_ACR-like_3 ACT domain-containing protein which 96.42
PF1384065 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2 96.22
COG4492150 PheB ACT domain-containing protein [General functi 96.14
PRK05092931 PII uridylyl-transferase; Provisional 95.84
PF1371063 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B. 95.82
PRK03381774 PII uridylyl-transferase; Provisional 95.62
PRK07334403 threonine dehydratase; Provisional 95.58
PRK10872743 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; 95.54
cd0488568 ACT_ThrD-I Tandem C-terminal ACT domains of threon 95.37
PRK13581526 D-3-phosphoglycerate dehydrogenase; Provisional 95.23
PRK11790409 D-3-phosphoglycerate dehydrogenase; Provisional 95.2
COG1707218 ACT domain-containing protein [General function pr 95.13
TIGR01327525 PGDH D-3-phosphoglycerate dehydrogenase. This mode 95.01
cd0491375 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine- 94.97
PRK05092931 PII uridylyl-transferase; Provisional 94.9
TIGR00691683 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. ( 94.74
PRK11092702 bifunctional (p)ppGpp synthetase II/ guanosine-3', 94.53
PRK05007884 PII uridylyl-transferase; Provisional 94.5
PRK03059856 PII uridylyl-transferase; Provisional 94.37
PF00185158 OTCace: Aspartate/ornithine carbamoyltransferase, 94.12
TIGR01127380 ilvA_1Cterm threonine dehydratase, medium form. A 94.11
PRK01759854 glnD PII uridylyl-transferase; Provisional 94.11
PRK04374869 PII uridylyl-transferase; Provisional 93.96
COG4747142 ACT domain-containing protein [General function pr 93.95
cd0493190 ACT_PAH ACT domain of the nonheme iron-dependent a 93.89
PRK08198404 threonine dehydratase; Provisional 93.68
cd0489265 ACT_AK-like_2 ACT domains C-terminal to the cataly 93.62
PRK01759854 glnD PII uridylyl-transferase; Provisional 93.18
PRK05007884 PII uridylyl-transferase; Provisional 92.79
PRK09436 819 thrA bifunctional aspartokinase I/homoserine dehyd 92.71
cd0492266 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctiona 92.69
cd0490474 ACT_AAAH ACT domain of the nonheme iron-dependent, 92.59
PRK00275895 glnD PII uridylyl-transferase; Provisional 92.28
COG0440163 IlvH Acetolactate synthase, small (regulatory) sub 92.21
cd0493764 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimela 92.12
PRK04374869 PII uridylyl-transferase; Provisional 92.03
PRK00275895 glnD PII uridylyl-transferase; Provisional 91.98
TIGR01693850 UTase_glnD [Protein-PII] uridylyltransferase. This 91.94
COG0317701 SpoT Guanosine polyphosphate pyrophosphohydrolases 91.92
PLN02342348 ornithine carbamoyltransferase 91.91
PRK08818370 prephenate dehydrogenase; Provisional 91.9
COG2150167 Predicted regulator of amino acid metabolism, cont 91.75
PRK06382406 threonine dehydratase; Provisional 91.37
cd0492466 ACT_AK-Arch_2 ACT domains of a monofunctional aspa 91.07
cd0491966 ACT_AK-Hom3_2 ACT domains located C-terminal to th 91.03
cd0493275 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal 90.61
cd0492974 ACT_TPH ACT domain of the nonheme iron-dependent a 90.36
KOG2663309 consensus Acetolactate synthase, small subunit [Am 90.34
PRK03059856 PII uridylyl-transferase; Provisional 89.99
cd0490685 ACT_ThrD-I_1 First of two tandem C-terminal ACT do 89.97
cd0491275 ACT_AKiii-LysC-EC-like_1 ACT domains located C-ter 89.93
PRK06545359 prephenate dehydrogenase; Validated 89.76
COG2844867 GlnD UTP:GlnB (protein PII) uridylyltransferase [P 89.66
cd0491865 ACT_AK1-AT_2 ACT domains located C-terminal to the 89.44
PRK02255338 putrescine carbamoyltransferase; Provisional 89.32
cd0486860 ACT_AK-like ACT domains C-terminal to the catalyti 89.12
PRK10696258 tRNA 2-thiocytidine biosynthesis protein TtcA; Pro 88.92
PRK06349426 homoserine dehydrogenase; Provisional 88.5
cd04930115 ACT_TH ACT domain of the nonheme iron-dependent ar 88.43
PRK11899279 prephenate dehydratase; Provisional 87.61
cd0491666 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal 87.51
PRK10820 520 DNA-binding transcriptional regulator TyrR; Provis 87.45
PRK08526403 threonine dehydratase; Provisional 87.4
PRK00779304 ornithine carbamoyltransferase; Provisional 87.23
PRK09466 810 metL bifunctional aspartate kinase II/homoserine d 87.16
cd0493663 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine- 87.08
COG2102223 Predicted ATPases of PP-loop superfamily [General 86.92
cd0493378 ACT_AK1-AT_1 ACT domains located C-terminal to the 86.36
PRK04284332 ornithine carbamoyltransferase; Provisional 85.87
cd0491566 ACT_AK-Ectoine_2 ACT domains located C-terminal to 85.86
cd0489161 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine- 85.86
cd0492363 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine- 84.91
cd0493575 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AK 84.79
PRK08192338 aspartate carbamoyltransferase; Provisional 84.64
PRK13814310 pyrB aspartate carbamoyltransferase catalytic subu 84.41
COG397886 Acetolactate synthase (isozyme II), small (regulat 84.39
TIGR01761 343 thiaz-red thiazolinyl imide reductase. This reduct 84.07
COG2061170 ACT-domain-containing protein, predicted allosteri 83.88
cd0492180 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunc 83.57
PRK06291465 aspartate kinase; Provisional 82.59
TIGR00670301 asp_carb_tr aspartate carbamoyltransferase. Ornith 82.46
COG0482356 TrmU Predicted tRNA(5-methylaminomethyl-2-thiourid 82.35
COG2844867 GlnD UTP:GlnB (protein PII) uridylyltransferase [P 82.21
PRK03515336 ornithine carbamoyltransferase subunit I; Provisio 81.89
TIGR02079409 THD1 threonine dehydratase. This model represents 81.79
PRK06635404 aspartate kinase; Reviewed 81.61
PRK08639420 threonine dehydratase; Validated 81.14
cd01994194 Alpha_ANH_like_IV This is a subfamily of Adenine n 80.84
PRK10622386 pheA bifunctional chorismate mutase/prephenate deh 80.27
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=2.7e-78  Score=569.23  Aligned_cols=281  Identities=45%  Similarity=0.711  Sum_probs=268.9

Q ss_pred             CCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHhhhhh
Q 018502           36 VSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA  115 (355)
Q Consensus        36 ~~~~~~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~lg~  115 (355)
                      |++.+++++||++|||++||||+||++|+++||||++++||.|..+|+||||++|..+....+.++|+++|++++++|||
T Consensus         1 m~~~~~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~~~~~~~~~l~~~f~~~a~~f~m   80 (287)
T COG0788           1 MSNEPDTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEGGPLDREALRAAFAPLAEEFGM   80 (287)
T ss_pred             CCCCccceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEecCCCcccHHHHHHHHHHHHHhhCc
Confidence            56777999999999999999999999999999999999999998899999999999988778899999999999999997


Q ss_pred             ccceeeeCCCCCCceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeC-CCCChh
Q 018502          116 MRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKENER  194 (355)
Q Consensus       116 ~~~~~~~~~~~~~~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~-~~~~~~  194 (355)
                         .|++++.+.++||++|+|+.+|||.|||++|+.|+|+++|++|||||++     +...++++||||++++ +++++.
T Consensus        81 ---~~~~~~~~~~~ri~i~VSK~~HCL~DLL~r~~~g~L~~eI~~VIsNH~d-----l~~~v~~~~IPfhhip~~~~~k~  152 (287)
T COG0788          81 ---DWRLHDAAQRKRIAILVSKEDHCLGDLLYRWRIGELPAEIVAVISNHDD-----LRPLVERFDIPFHHIPVTKENKA  152 (287)
T ss_pred             ---eeEEeccccCceEEEEEechHHHHHHHHHHHhcCCcCCceEEEEcCCHH-----HHHHHHHcCCCeeeccCCCCcch
Confidence               6999999999999999999999999999999999999999999999974     7999999999999999 566543


Q ss_pred             --HHHHHHHhc--CCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChHHHhhcCCCeEEecCCCCCCC
Q 018502          195 --EEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSF  270 (355)
Q Consensus       195 --~~~~~~~l~--~~Dlivla~y~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~~l~~~~~~~INiHpslLP~y  270 (355)
                        +++++++++  ++|++|||+|||                              |||++|++++++++|||||||||+|
T Consensus       153 e~E~~~~~ll~~~~~DlvVLARYMq------------------------------ILS~d~~~~~~g~iINIHHSFLPaF  202 (287)
T COG0788         153 EAEARLLELLEEYGADLVVLARYMQ------------------------------ILSPDFVERFPGKIINIHHSFLPAF  202 (287)
T ss_pred             HHHHHHHHHHHHhCCCEEeehhhHh------------------------------hCCHHHHHhccCcEEEecccccccC
Confidence              467888887  799999999999                              9999999999999999999999999


Q ss_pred             CCchHHHHHHHhCCcEeEEEEEEecCcCCCCCeeeeEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeecCC
Q 018502          271 KGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMN  350 (355)
Q Consensus       271 rG~~p~~~A~~~G~~~~G~T~H~v~~~~D~G~Ii~q~~~~I~~~dt~~~l~~k~~~~~~~~l~~~i~~~~~~~~~~~~~~  350 (355)
                      .|++||++|+++|+|.+|+|+|||++++|+||||.|+.++|+|.+|.++|..+.+++|++.|.+|+++++++|++.++ |
T Consensus       203 ~GA~PY~QA~eRGVKlIGATAHYVT~dLDeGPIIeQdv~rV~H~~s~ed~~~~GrDvE~~VLARAv~~hle~Rv~v~g-n  281 (287)
T COG0788         203 IGANPYHQAYERGVKLIGATAHYVTADLDEGPIIEQDVIRVDHAYSVEDLVRAGRDVEKLVLARAVKAHLEDRVFVNG-N  281 (287)
T ss_pred             CCCChHHHHHhcCCeEeeeeeeeccCCCCCCCceeeeeeecCccCCHHHHHHhCCcHHHHHHHHHHHHHhcceEEEeC-C
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999996 9


Q ss_pred             ceeeC
Q 018502          351 KTVVF  355 (355)
Q Consensus       351 ~tvvf  355 (355)
                      |||||
T Consensus       282 kTVVf  286 (287)
T COG0788         282 KTVVF  286 (287)
T ss_pred             eEEec
Confidence            99998

>TIGR00655 PurU formyltetrahydrofolate deformylase Back     alignment and domain information
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>PLN02828 formyltetrahydrofolate deformylase Back     alignment and domain information
>PRK13011 formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG3076 consensus 5'-phosphoribosylglycinamide formyltransferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02331 phosphoribosylglycinamide formyltransferase Back     alignment and domain information
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent Back     alignment and domain information
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed Back     alignment and domain information
>PLN02285 methionyl-tRNA formyltransferase Back     alignment and domain information
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group Back     alignment and domain information
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK06988 putative formyltransferase; Provisional Back     alignment and domain information
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed Back     alignment and domain information
>TIGR00460 fmt methionyl-tRNA formyltransferase Back     alignment and domain information
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated Back     alignment and domain information
>PRK07579 hypothetical protein; Provisional Back     alignment and domain information
>KOG3082 consensus Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2452 consensus Formyltetrahydrofolate dehydrogenase [Nucleotide transport and metabolism] Back     alignment and domain information
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains Back     alignment and domain information
>COG3830 ACT domain-containing protein [Signal transduction mechanisms] Back     alignment and domain information
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) Back     alignment and domain information
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein Back     alignment and domain information
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A Back     alignment and domain information
>PRK00194 hypothetical protein; Validated Back     alignment and domain information
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB) Back     alignment and domain information
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional Back     alignment and domain information
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains Back     alignment and domain information
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional Back     alignment and domain information
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB) Back     alignment and domain information
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism] Back     alignment and domain information
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold Back     alignment and domain information
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism] Back     alignment and domain information
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A Back     alignment and domain information
>CHL00100 ilvH acetohydroxyacid synthase small subunit Back     alignment and domain information
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD Back     alignment and domain information
>PRK08577 hypothetical protein; Provisional Back     alignment and domain information
>PRK04435 hypothetical protein; Provisional Back     alignment and domain information
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains Back     alignment and domain information
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains Back     alignment and domain information
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a Back     alignment and domain information
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a Back     alignment and domain information
>PRK03381 PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) Back     alignment and domain information
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH) Back     alignment and domain information
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains Back     alignment and domain information
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains Back     alignment and domain information
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains Back     alignment and domain information
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS) Back     alignment and domain information
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains Back     alignment and domain information
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains Back     alignment and domain information
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH) Back     alignment and domain information
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated Back     alignment and domain information
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit Back     alignment and domain information
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB Back     alignment and domain information
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed Back     alignment and domain information
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate Back     alignment and domain information
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria Back     alignment and domain information
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein Back     alignment and domain information
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme Back     alignment and domain information
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional Back     alignment and domain information
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase Back     alignment and domain information
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria Back     alignment and domain information
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains Back     alignment and domain information
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional Back     alignment and domain information
>TIGR00119 acolac_sm acetolactate synthase, small subunit Back     alignment and domain information
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit Back     alignment and domain information
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme Back     alignment and domain information
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed Back     alignment and domain information
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains Back     alignment and domain information
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH) Back     alignment and domain information
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D Back     alignment and domain information
>COG4492 PheB ACT domain-containing protein [General function prediction only] Back     alignment and domain information
>PRK05092 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B Back     alignment and domain information
>PRK03381 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK07334 threonine dehydratase; Provisional Back     alignment and domain information
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional Back     alignment and domain information
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) Back     alignment and domain information
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional Back     alignment and domain information
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional Back     alignment and domain information
>COG1707 ACT domain-containing protein [General function prediction only] Back     alignment and domain information
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase Back     alignment and domain information
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins Back     alignment and domain information
>PRK05092 PII uridylyl-transferase; Provisional Back     alignment and domain information
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family Back     alignment and domain information
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional Back     alignment and domain information
>PRK05007 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK03059 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2 Back     alignment and domain information
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form Back     alignment and domain information
>PRK01759 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK04374 PII uridylyl-transferase; Provisional Back     alignment and domain information
>COG4747 ACT domain-containing protein [General function prediction only] Back     alignment and domain information
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH) Back     alignment and domain information
>PRK08198 threonine dehydratase; Provisional Back     alignment and domain information
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase) Back     alignment and domain information
>PRK01759 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK05007 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional Back     alignment and domain information
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH) Back     alignment and domain information
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH) Back     alignment and domain information
>PRK00275 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism] Back     alignment and domain information
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI Back     alignment and domain information
>PRK04374 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK00275 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase Back     alignment and domain information
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription] Back     alignment and domain information
>PLN02342 ornithine carbamoyltransferase Back     alignment and domain information
>PRK08818 prephenate dehydrogenase; Provisional Back     alignment and domain information
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only] Back     alignment and domain information
>PRK06382 threonine dehydratase; Provisional Back     alignment and domain information
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2) Back     alignment and domain information
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3 Back     alignment and domain information
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII Back     alignment and domain information
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes Back     alignment and domain information
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism] Back     alignment and domain information
>PRK03059 PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) Back     alignment and domain information
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII Back     alignment and domain information
>PRK06545 prephenate dehydrogenase; Validated Back     alignment and domain information
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1) Back     alignment and domain information
>PRK02255 putrescine carbamoyltransferase; Provisional Back     alignment and domain information
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase) Back     alignment and domain information
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional Back     alignment and domain information
>PRK06349 homoserine dehydrogenase; Provisional Back     alignment and domain information
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH) Back     alignment and domain information
>PRK11899 prephenate dehydratase; Provisional Back     alignment and domain information
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII Back     alignment and domain information
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional Back     alignment and domain information
>PRK08526 threonine dehydratase; Provisional Back     alignment and domain information
>PRK00779 ornithine carbamoyltransferase; Provisional Back     alignment and domain information
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional Back     alignment and domain information
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains Back     alignment and domain information
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only] Back     alignment and domain information
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1) Back     alignment and domain information
>PRK04284 ornithine carbamoyltransferase; Provisional Back     alignment and domain information
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway Back     alignment and domain information
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins Back     alignment and domain information
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains Back     alignment and domain information
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein Back     alignment and domain information
>PRK08192 aspartate carbamoyltransferase; Provisional Back     alignment and domain information
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional Back     alignment and domain information
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown] Back     alignment and domain information
>TIGR01761 thiaz-red thiazolinyl imide reductase Back     alignment and domain information
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH) Back     alignment and domain information
>PRK06291 aspartate kinase; Provisional Back     alignment and domain information
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase Back     alignment and domain information
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional Back     alignment and domain information
>TIGR02079 THD1 threonine dehydratase Back     alignment and domain information
>PRK06635 aspartate kinase; Reviewed Back     alignment and domain information
>PRK08639 threonine dehydratase; Validated Back     alignment and domain information
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily Back     alignment and domain information
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query355
3o1l_A302 Crystal Structure Of A Formyltetrahydrofolate Defor 1e-46
3obi_A288 Crystal Structure Of A Formyltetrahydrofolate Defor 1e-38
3nrb_A287 Crystal Structure Of A Formyltetrahydrofolate Defor 7e-36
3lou_A292 Crystal Structure Of Formyltetrahydrofolate Deformy 1e-31
3n0v_A286 Crystal Structure Of A Formyltetrahydrofolate Defor 2e-28
3kcq_A215 Crystal Structure Of Phosphoribosylglycinamide Form 2e-14
3p9x_A211 Crystal Structure Of Phosphoribosylglycinamide Form 1e-13
2ywr_A216 Crystal Structure Of Gar Transformylase From Aquife 6e-13
1zly_A203 The Structure Of Human Glycinamide Ribonucleotide T 8e-13
1meo_A209 Human Glycinamide Ribonucleotide Transformylase At 8e-13
1zlx_A203 The Apo Structure Of Human Glycinamide Ribonucleoti 9e-13
1mej_B223 Human Glycinamide Ribonucleotide Transformylase Dom 9e-13
3auf_A229 Crystal Structure Of Glycinamide Ribonucleotide Tra 5e-12
4ds3_A209 Crystal Structure Of Phosphoribosylglycinamide Form 2e-11
3av3_A212 Crystal Structure Of Glycinamide Ribonucleotide Tra 3e-08
1c3e_A209 New Insights Into Inhibitor Design From The Crystal 5e-08
1grc_A212 Crystal Structure Of Glycinamide Ribonucleotide Tra 5e-08
1cdd_A212 Structures Of Apo And Complexed Escherichia Coli Gl 5e-08
2gar_A212 A Ph-dependent Stablization Of An Active Site Loop 5e-08
4iqf_A 317 Crystal Structure Of Methyionyl-trna Formyltransfer 1e-07
3tqr_A215 Structure Of The Phosphoribosylglycinamide Formyltr 2e-07
3da8_A215 Crystal Structure Of Purn From Mycobacterium Tuberc 5e-07
1fmt_A 314 Methionyl-Trnafmet Formyltransferase From Escherich 5e-04
3tqq_A 314 Structure Of The Methionyl-Trna Formyltransferase ( 5e-04
>pdb|3O1L|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase (Pspto_4314) From Pseudomonas Syringae Pv. Tomato Str. Dc3000 At 2.20 A Resolution Length = 302 Back     alignment and structure 
Iteration: 1

 Score =  183 bits (465), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 120/315 (38%), Positives = 157/315 (49%), Gaps = 44/315 (13%)
Query: 46  VFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDED 105
           V  CPD VGIVAK+S  +AS  G I  A          F+ R E   D + +  +   E 
Sbjct: 26  VIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFXRHEIRADTLPFDLDGFREA 85
Query: 106 FFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNH 165
           F  +++ F+      R+ D   K +V + AS++ HCL D L+ W   +L  +I CVISNH
Sbjct: 86  FTPIAEEFSXD---WRITDSAQKKRVVLXASRESHCLADLLHRWHSDELDCDIACVISNH 142
Query: 166 DRGPNSHVIRFLERHGIPYHYLCAKXXXXXXXXXXXVQ-----NTDFLVLARYMQPVPLQ 220
                  +   +E H IPY+++               +       D +VLARY Q +P Q
Sbjct: 143 -----QDLRSXVEWHDIPYYHVPVDPKDKEPAFAEVSRLVGHHQADVVVLARYXQILPPQ 197
Query: 221 KEAXXXXXXXXXXXXXXXXXXXFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAF 280
                                           R Y   VINIHH  LPSF G KP  QA 
Sbjct: 198 ------------------------------LCREYAHQVINIHHSFLPSFVGAKPYHQAS 227
Query: 281 DAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYC 340
             GVKLIGAT H+VTEELDAGPIIEQ V RVSHRD++   V+   DVEK  LA+ ++++ 
Sbjct: 228 LRGVKLIGATCHYVTEELDAGPIIEQDVVRVSHRDSIENXVRFGRDVEKXVLARGLRAHL 287
Query: 341 ELRVLPYEMNKTVVF 355
           E RVL ++ NKTVVF
Sbjct: 288 EDRVLVHD-NKTVVF 301
>pdb|3OBI|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase (Np_949368) From Rhodopseudomonas Palustris Cga009 At 1.95 A Resolution Length = 288 Back     alignment and structure
>pdb|3NRB|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase (Puru, Pp_1943) From Pseudomonas Putida Kt2440 At 2.05 A Resolution Length = 287 Back     alignment and structure
>pdb|3LOU|A Chain A, Crystal Structure Of Formyltetrahydrofolate Deformylase (yp_105254.1) From Burkholderia Mallei Atcc 23344 At 1.90 A Resolution Length = 292 Back     alignment and structure
>pdb|3N0V|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase (Pp_0327) From Pseudomonas Putida Kt2440 At 2.25 A Resolution Length = 286 Back     alignment and structure
>pdb|3KCQ|A Chain A, Crystal Structure Of Phosphoribosylglycinamide Formyltransferase From Anaplasma Phagocytophilum Length = 215 Back     alignment and structure
>pdb|3P9X|A Chain A, Crystal Structure Of Phosphoribosylglycinamide Formyltransferase From Bacillus Halodurans Length = 211 Back     alignment and structure
>pdb|2YWR|A Chain A, Crystal Structure Of Gar Transformylase From Aquifex Aeolicus Length = 216 Back     alignment and structure
>pdb|1ZLY|A Chain A, The Structure Of Human Glycinamide Ribonucleotide Transformylase In Complex With Alpha,beta-n- (hydroxyacetyl)-d-ribofuranosylamine And 10-formyl-5,8, Dideazafolate Length = 203 Back     alignment and structure
>pdb|1MEO|A Chain A, Human Glycinamide Ribonucleotide Transformylase At Ph 4.2 Length = 209 Back     alignment and structure
>pdb|1ZLX|A Chain A, The Apo Structure Of Human Glycinamide Ribonucleotide Transformylase Length = 203 Back     alignment and structure
>pdb|1MEJ|B Chain B, Human Glycinamide Ribonucleotide Transformylase Domain At Ph 8.5 Length = 223 Back     alignment and structure
>pdb|3AUF|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide Transformylase 1 From Symbiobacterium Toebii Length = 229 Back     alignment and structure
>pdb|4DS3|A Chain A, Crystal Structure Of Phosphoribosylglycinamide Formyltransferase From Brucella Melitensis Length = 209 Back     alignment and structure
>pdb|3AV3|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide Transformylase 1 From Geobacillus Kaustophilus Length = 212 Back     alignment and structure
>pdb|1C3E|A Chain A, New Insights Into Inhibitor Design From The Crystal Structure And Nmr Studies Of E. Coli Gar Transformylate In Complex With Beta-Gar And 10-Formyl-5,8,10-Trideazafolic Acid. Length = 209 Back     alignment and structure
>pdb|1GRC|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide Transformylase From Escherichia Coli At 3.0 Angstroms Resolution: A Target Enzyme For Chemotherapy Length = 212 Back     alignment and structure
>pdb|1CDD|A Chain A, Structures Of Apo And Complexed Escherichia Coli Glycinamide Ribonucleotide Transformylase Length = 212 Back     alignment and structure
>pdb|2GAR|A Chain A, A Ph-dependent Stablization Of An Active Site Loop Observed From Low And High Ph Crystal Structures Of Mutant Monomeric Glycinamide Ribonucleotide Transformylase Length = 212 Back     alignment and structure
>pdb|4IQF|A Chain A, Crystal Structure Of Methyionyl-trna Formyltransferase From Bacillus Anthracis Length = 317 Back     alignment and structure
>pdb|3TQR|A Chain A, Structure Of The Phosphoribosylglycinamide Formyltransferase (Purn) In Complex With Ches From Coxiella Burnetii Length = 215 Back     alignment and structure
>pdb|3DA8|A Chain A, Crystal Structure Of Purn From Mycobacterium Tuberculosis Length = 215 Back     alignment and structure
>pdb|1FMT|A Chain A, Methionyl-Trnafmet Formyltransferase From Escherichia Coli Length = 314 Back     alignment and structure
>pdb|3TQQ|A Chain A, Structure Of The Methionyl-Trna Formyltransferase (Fmt) From Coxiella Burnetii Length = 314 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query355
3o1l_A302 Formyltetrahydrofolate deformylase; structural gen 1e-129
3obi_A288 Formyltetrahydrofolate deformylase; structural gen 1e-128
3lou_A292 Formyltetrahydrofolate deformylase; structural gen 1e-128
3n0v_A286 Formyltetrahydrofolate deformylase; formyl transfe 1e-127
3nrb_A287 Formyltetrahydrofolate deformylase; N-terminal ACT 1e-123
3kcq_A215 Phosphoribosylglycinamide formyltransferase; struc 2e-37
3auf_A229 Glycinamide ribonucleotide transformylase 1; struc 2e-36
3p9x_A211 Phosphoribosylglycinamide formyltransferase; struc 2e-36
3av3_A212 Phosphoribosylglycinamide formyltransferase; struc 3e-36
1jkx_A212 GART;, phosphoribosylglycinamide formyltransferase 4e-36
2ywr_A216 Phosphoribosylglycinamide formyltransferase; rossm 6e-36
4ds3_A209 Phosphoribosylglycinamide formyltransferase; struc 6e-36
3tqr_A215 Phosphoribosylglycinamide formyltransferase; purin 8e-36
3da8_A215 Probable 5'-phosphoribosylglycinamide formyltransf 1e-35
1meo_A209 Phosophoribosylglycinamide formyltransferase; puri 1e-35
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-09
1zgh_A260 Methionyl-tRNA formyltransferase; southeast collab 2e-09
1z7e_A 660 Protein aRNA; rossmann fold, OB-like fold, hydrola 8e-05
2bln_A 305 Protein YFBG; transferase, formyltransferase, L-AR 1e-04
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV} Length = 302 Back     alignment and structure
 Score =  370 bits (952), Expect = e-129
 Identities = 125/331 (37%), Positives = 167/331 (50%), Gaps = 44/331 (13%)

Query: 30  EPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSE 89
              E+     +     V  CPD VGIVAK+S  +AS  G I  A          F+ R E
Sbjct: 10  HHHENLYFQGMRTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHE 69

Query: 90  FIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGW 149
              D + +  +   E F  +++ F+      R+ D   K +V ++AS++ HCL D L+ W
Sbjct: 70  IRADTLPFDLDGFREAFTPIAEEFSM---DWRITDSAQKKRVVLMASRESHCLADLLHRW 126

Query: 150 QEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYL-CAKEN--EREEELLELVQ--N 204
              +L  +I CVISNH       +   +E H IPY+++    ++      E+  LV    
Sbjct: 127 HSDELDCDIACVISNHQ-----DLRSMVEWHDIPYYHVPVDPKDKEPAFAEVSRLVGHHQ 181

Query: 205 TDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHH 264
            D +VLARYMQ                              IL  +  R Y   VINIHH
Sbjct: 182 ADVVVLARYMQ------------------------------ILPPQLCREYAHQVINIHH 211

Query: 265 GLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKS 324
             LPSF G KP  QA   GVKLIGAT H+VTEELDAGPIIEQ V RVSHRD++   V+  
Sbjct: 212 SFLPSFVGAKPYHQASLRGVKLIGATCHYVTEELDAGPIIEQDVVRVSHRDSIENMVRFG 271

Query: 325 EDVEKQCLAKAIKSYCELRVLPYEMNKTVVF 355
            DVEK  LA+ ++++ E RVL ++ NKTVVF
Sbjct: 272 RDVEKMVLARGLRAHLEDRVLVHD-NKTVVF 301
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris} Length = 288 Back     alignment and structure
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei} Length = 292 Back     alignment and structure
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida} Length = 286 Back     alignment and structure
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida} Length = 287 Back     alignment and structure
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} Length = 215 Back     alignment and structure
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii} Length = 229 Back     alignment and structure
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans} Length = 211 Back     alignment and structure
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus} Length = 212 Back     alignment and structure
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A* Length = 212 Back     alignment and structure
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus} Length = 216 Back     alignment and structure
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV} Length = 209 Back     alignment and structure
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} Length = 215 Back     alignment and structure
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A* Length = 215 Back     alignment and structure
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A* Length = 209 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory FO structural genomics, PSI, protein structure initiative, secsg; 2.05A {Clostridium thermocellum} SCOP: b.46.1.1 c.65.1.1 Length = 260 Back     alignment and structure
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 Length = 660 Back     alignment and structure
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A Length = 305 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query355
3lou_A292 Formyltetrahydrofolate deformylase; structural gen 100.0
3n0v_A286 Formyltetrahydrofolate deformylase; formyl transfe 100.0
3o1l_A302 Formyltetrahydrofolate deformylase; structural gen 100.0
3nrb_A287 Formyltetrahydrofolate deformylase; N-terminal ACT 100.0
3obi_A288 Formyltetrahydrofolate deformylase; structural gen 100.0
3kcq_A215 Phosphoribosylglycinamide formyltransferase; struc 100.0
3tqr_A215 Phosphoribosylglycinamide formyltransferase; purin 100.0
4ds3_A209 Phosphoribosylglycinamide formyltransferase; struc 100.0
3da8_A215 Probable 5'-phosphoribosylglycinamide formyltransf 100.0
1meo_A209 Phosophoribosylglycinamide formyltransferase; puri 100.0
1jkx_A212 GART;, phosphoribosylglycinamide formyltransferase 100.0
3p9x_A211 Phosphoribosylglycinamide formyltransferase; struc 100.0
3auf_A229 Glycinamide ribonucleotide transformylase 1; struc 100.0
2ywr_A216 Phosphoribosylglycinamide formyltransferase; rossm 100.0
3av3_A212 Phosphoribosylglycinamide formyltransferase; struc 100.0
1fmt_A 314 Methionyl-tRNA FMet formyltransferase; initiator t 100.0
2bln_A 305 Protein YFBG; transferase, formyltransferase, L-AR 100.0
3q0i_A 318 Methionyl-tRNA formyltransferase; structural genom 100.0
3tqq_A 314 Methionyl-tRNA formyltransferase; protein synthesi 100.0
3rfo_A 317 Methionyl-tRNA formyltransferase; structural genom 100.0
1z7e_A 660 Protein aRNA; rossmann fold, OB-like fold, hydrola 100.0
2bw0_A 329 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase 100.0
1zgh_A260 Methionyl-tRNA formyltransferase; southeast collab 99.95
3p96_A415 Phosphoserine phosphatase SERB; ssgcid, structural 99.77
2nyi_A195 Unknown protein; protein structure initiative, PSI 99.57
1u8s_A192 Glycine cleavage system transcriptional repressor, 99.55
1zpv_A91 ACT domain protein; structural genomics, PSI, prot 99.53
2nyi_A195 Unknown protein; protein structure initiative, PSI 99.52
1u8s_A192 Glycine cleavage system transcriptional repressor, 99.43
2ko1_A88 CTR148A, GTP pyrophosphokinase; homodimer, alpha+b 98.24
3p96_A415 Phosphoserine phosphatase SERB; ssgcid, structural 97.53
2f1f_A164 Acetolactate synthase isozyme III small subunit; f 97.32
2f06_A144 Conserved hypothetical protein; structural genomic 97.17
2re1_A167 Aspartokinase, alpha and beta subunits; structural 97.13
1y7p_A223 Hypothetical protein AF1403; structural genomics, 97.08
2fgc_A193 Acetolactate synthase, small subunit; regulatory s 97.08
2pc6_A165 Probable acetolactate synthase isozyme III (small; 97.04
2dt9_A167 Aspartokinase; protein-ligand complex, regulatory 96.76
1ygy_A529 PGDH, D-3-phosphoglycerate dehydrogenase; oxidored 96.44
4go7_X200 Aspartokinase; transferase; 2.00A {Mycobacterium t 96.0
2jhe_A190 Transcription regulator TYRR; aromatic hydrocarbon 95.81
1sc6_A404 PGDH, D-3-phosphoglycerate dehydrogenase; alloster 95.73
2f06_A144 Conserved hypothetical protein; structural genomic 95.62
3s1t_A181 Aspartokinase; ACT domain, threonine binding, regu 95.2
2dtj_A178 Aspartokinase; protein-ligand complex, regulatory 94.19
2re1_A167 Aspartokinase, alpha and beta subunits; structural 93.12
2i6u_A307 Otcase, ornithine carbamoyltransferase; X-RAY crys 92.73
4gmf_A 372 Yersiniabactin biosynthetic protein YBTU; rossmann 92.27
3k5p_A416 D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, 92.11
2dtj_A178 Aspartokinase; protein-ligand complex, regulatory 91.84
3mtj_A444 Homoserine dehydrogenase; rossmann-fold, PSI, MCSG 90.62
3ab4_A421 Aspartokinase; aspartate kinase, concerted inhibit 90.59
2dt9_A167 Aspartokinase; protein-ligand complex, regulatory 90.15
1pvv_A315 Otcase, ornithine carbamoyltransferase; dodecamer; 90.12
1vlv_A325 Otcase, ornithine carbamoyltransferase; TM1097, st 89.98
3gd5_A323 Otcase, ornithine carbamoyltransferase; structural 89.31
4ep1_A340 Otcase, ornithine carbamoyltransferase; structural 88.85
3tpf_A307 Otcase, ornithine carbamoyltransferase; structural 88.15
3grf_A328 Ornithine carbamoyltransferase; ornithine transcar 87.29
3l76_A600 Aspartokinase; allostery, ACT domains, kinase tran 86.1
3s1t_A181 Aspartokinase; ACT domain, threonine binding, regu 85.9
1zhv_A134 Hypothetical protein ATU0741; NESG, ATR8, structur 84.3
4go7_X200 Aspartokinase; transferase; 2.00A {Mycobacterium t 84.14
3rjz_A237 N-type ATP pyrophosphatase superfamily; structural 83.74
1duv_G333 Octase-1, ornithine transcarbamoylase; enzyme-inhi 83.63
1dxh_A335 Ornithine carbamoyltransferase; transcarbamylase; 83.59
1zq6_A359 Otcase, ornithine carbamoyltransferase; alpha/beta 81.98
4f2g_A309 Otcase 1, ornithine carbamoyltransferase 1; struct 81.7
2w37_A359 Ornithine carbamoyltransferase, catabolic; transca 80.99
4a8t_A339 Putrescine carbamoyltransferase; trabnsferase PALO 80.15
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei} Back     alignment and structure
Probab=100.00  E-value=3.2e-75  Score=561.59  Aligned_cols=282  Identities=35%  Similarity=0.592  Sum_probs=259.1

Q ss_pred             CCCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeC--CCCCChHHHHHHHHHHHhh
Q 018502           35 SVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFD--PIKWPREQMDEDFFKLSKM  112 (355)
Q Consensus        35 ~~~~~~~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~--~~~~~~~~L~~~l~~la~~  112 (355)
                      ||+..+++++||++|||||||||+||++|+++||||+|++|+.|..+|.||||++|+.+  +...+.++|+++|+++|++
T Consensus         3 ~~~~~~~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~~~L~~~f~~la~~   82 (292)
T 3lou_A            3 SVPQRPHQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADALRVDALRREFEPIAER   82 (292)
T ss_dssp             -----CCEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC----CCHHHHHHHHHHHHHH
T ss_pred             CCcCCCCcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcccCCCHHHHHHHHHHHHHh
Confidence            57677788999999999999999999999999999999999988889999999999987  5356899999999999999


Q ss_pred             hhhccceeeeCCCCCCceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeCCC-C
Q 018502          113 FNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK-E  191 (355)
Q Consensus       113 lg~~~~~~~~~~~~~~~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~-~  191 (355)
                      ++|   +|++.+.++++|||||+||+||||++||++++.|+++++|++|+|||++     +.++|+++|||+++++.+ .
T Consensus        83 ~~m---~~~l~~~~~~~ri~vl~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~-----~~~~A~~~gIp~~~~~~~~~  154 (292)
T 3lou_A           83 FRM---QWAIHDVAARPKVLIMVSKLEHCLADLLFRWKMGELKMDIVGIVSNHPD-----FAPLAAQHGLPFRHFPITAD  154 (292)
T ss_dssp             HTC---EEEEEETTSCCEEEEEECSCCHHHHHHHHHHHHTSSCCEEEEEEESSST-----THHHHHHTTCCEEECCCCSS
T ss_pred             cCc---EEEeeccCCCCEEEEEEcCCCcCHHHHHHHHHcCCCCcEEEEEEeCcHH-----HHHHHHHcCCCEEEeCCCcC
Confidence            998   6899988999999999999999999999999999999999999999964     457899999999988743 2


Q ss_pred             Ch--hHHHHHHHhc--CCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChHHHhhcCCCeEEecCCCC
Q 018502          192 NE--REEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLL  267 (355)
Q Consensus       192 ~~--~~~~~~~~l~--~~Dlivla~y~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~~l~~~~~~~INiHpslL  267 (355)
                      +.  .++++++.++  ++|++|+||||+                              |||+++++.|++++||+|||||
T Consensus       155 ~r~~~~~~~~~~l~~~~~Dlivla~y~~------------------------------il~~~~l~~~~~~~iNiHpSlL  204 (292)
T 3lou_A          155 TKAQQEAQWLDVFETSGAELVILARYMQ------------------------------VLSPEASARLANRAINIHHSFL  204 (292)
T ss_dssp             CHHHHHHHHHHHHHHHTCSEEEESSCCS------------------------------CCCHHHHHHTTTSEEEEEEECS
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEecCchh------------------------------hCCHHHHhhhcCCeEEeCCCcC
Confidence            22  2457888887  899999999999                              9999999999999999999999


Q ss_pred             CCCCCchHHHHHHHhCCcEeEEEEEEecCcCCCCCeeeeEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeee
Q 018502          268 PSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPY  347 (355)
Q Consensus       268 P~yrG~~p~~~A~~~G~~~~G~T~H~v~~~~D~G~Ii~q~~~~I~~~dt~~~l~~k~~~~~~~~l~~~i~~~~~~~~~~~  347 (355)
                      |+|||++|++||+++|++.+|+|+|+|++++|+||||.|+.++|.++||.++|.+|++++|+++++++++++++|++..+
T Consensus       205 P~~rG~~p~~~Ai~~G~~~~G~Tvh~v~~~lD~G~Ii~Q~~v~i~~~dt~~~L~~r~~~~e~~~l~~av~~~~~~~~~~~  284 (292)
T 3lou_A          205 PGFKGAKPYHQAHARGVKLIGATAHFVTDDLDEGPIIEQVVERVDHSYRPEQLLAVGRDVECITLARAVKAFIERRVFLN  284 (292)
T ss_dssp             SCCCSSCHHHHHHHHTCSEEEEEEEECCSSTTCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             cCCCCccHHHHHHHcCCCeEEEEEEEEcCCCcCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCEEEc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCceeeC
Q 018502          348 EMNKTVVF  355 (355)
Q Consensus       348 ~~~~tvvf  355 (355)
                      + +|||||
T Consensus       285 ~-~~~~vf  291 (292)
T 3lou_A          285 G-DRTVVF  291 (292)
T ss_dssp             T-TEEEEC
T ss_pred             C-CEEEEe
Confidence            6 999998
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida} Back     alignment and structure
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV} Back     alignment and structure
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida} Back     alignment and structure
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris} Back     alignment and structure
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0 Back     alignment and structure
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0 Back     alignment and structure
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV} Back     alignment and structure
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A* Back     alignment and structure
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A* Back     alignment and structure
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A* Back     alignment and structure
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans} Back     alignment and structure
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii} Back     alignment and structure
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus} Back     alignment and structure
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus} Back     alignment and structure
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A Back     alignment and structure
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A Back     alignment and structure
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae} Back     alignment and structure
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii} Back     alignment and structure
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 Back     alignment and structure
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A Back     alignment and structure
>1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory FO structural genomics, PSI, protein structure initiative, secsg; 2.05A {Clostridium thermocellum} SCOP: b.46.1.1 c.65.1.1 Back     alignment and structure
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium} Back     alignment and structure
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} Back     alignment and structure
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 Back     alignment and structure
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7 Back     alignment and structure
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} Back     alignment and structure
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 Back     alignment and structure
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A Back     alignment and structure
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium} Back     alignment and structure
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6 Back     alignment and structure
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11 Back     alignment and structure
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58} Back     alignment and structure
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12 Back     alignment and structure
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6 Back     alignment and structure
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6 Back     alignment and structure
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A Back     alignment and structure
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* Back     alignment and structure
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X Back     alignment and structure
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli} Back     alignment and structure
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* Back     alignment and structure
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11 Back     alignment and structure
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis} Back     alignment and structure
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B* Back     alignment and structure
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58} Back     alignment and structure
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A Back     alignment and structure
>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* Back     alignment and structure
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} Back     alignment and structure
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B* Back     alignment and structure
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} Back     alignment and structure
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A Back     alignment and structure
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A Back     alignment and structure
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A Back     alignment and structure
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1 Back     alignment and structure
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus} Back     alignment and structure
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis} Back     alignment and structure
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp} Back     alignment and structure
>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis} Back     alignment and structure
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis} Back     alignment and structure
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis} Back     alignment and structure
>1zhv_A Hypothetical protein ATU0741; NESG, ATR8, structural genomics, PSI, protein struc initiative; 1.50A {Agrobacterium tumefaciens str} SCOP: d.58.18.8 d.58.18.8 Back     alignment and structure
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X Back     alignment and structure
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A Back     alignment and structure
>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A* Back     alignment and structure
>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A Back     alignment and structure
>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} Back     alignment and structure
>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii} Back     alignment and structure
>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 355
d1meoa_205 c.65.1.1 (A:) Glycinamide ribonucleotide transform 2e-22
d1jkxa_209 c.65.1.1 (A:) Glycinamide ribonucleotide transform 7e-21
d1zgha2164 c.65.1.1 (A:1-164) Methionyl-tRNAfmet formyltransf 3e-06
d1u8sa293 d.58.18.5 (A:88-180) putative transcriptional repr 4e-06
d1u8sa186 d.58.18.5 (A:2-87) putative transcriptional repres 9e-06
d1zpva183 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Strepto 7e-05
>d1meoa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase, GART {Human (Homo sapiens) [TaxId: 9606]} Length = 205 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Glycinamide ribonucleotide transformylase, GART
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.9 bits (227), Expect = 2e-22
 Identities = 56/226 (24%), Positives = 85/226 (37%), Gaps = 28/226 (12%)

Query: 130 KVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA 189
           +VAVL S     L   +   +E     +I  VISN                    ++   
Sbjct: 2   RVAVLISGTGSNLQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLY 61

Query: 190 KENEREEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSG 249
           K     +  +                             +LE  S      + F  ILSG
Sbjct: 62  KNRVEFDSAI---------------------------DLVLEEFSIDIVCLAGFMRILSG 94

Query: 250 KFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVE 309
            F++ +   ++NIH  LLPSFKG    +QA + GV + G T HFV E++DAG II Q   
Sbjct: 95  PFVQKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEDVDAGQIILQEAV 154

Query: 310 RVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF 355
            V   D + T  ++ +  E +    A++      V   E N  + +
Sbjct: 155 PVKRGDTVATLSERVKLAEHKIFPAALQLVASGTVQLGE-NGKICW 199
>d1jkxa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase, GART {Escherichia coli [TaxId: 562]} Length = 209 Back     information, alignment and structure
>d1zgha2 c.65.1.1 (A:1-164) Methionyl-tRNAfmet formyltransferase {Clostridium thermocellum [TaxId: 1515]} Length = 164 Back     information, alignment and structure
>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Length = 93 Back     information, alignment and structure
>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Length = 86 Back     information, alignment and structure
>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]} Length = 83 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query355
d1jkxa_209 Glycinamide ribonucleotide transformylase, GART {E 100.0
d1meoa_205 Glycinamide ribonucleotide transformylase, GART {H 100.0
d2bw0a2203 10-formyltetrahydrofolate dehydrogenase domain 1 { 100.0
d1fmta2206 Methionyl-tRNAfmet formyltransferase {Escherichia 100.0
d2blna2203 Polymyxin resistance protein ArnA, N-terminal doma 100.0
d1zgha2164 Methionyl-tRNAfmet formyltransferase {Clostridium 99.92
d1zpva183 UPF0237 protein SP0238 {Streptococcus pneumoniae [ 99.81
d1u8sa186 putative transcriptional repressor VC2159 {Vibrio 99.7
d1u8sa293 putative transcriptional repressor VC2159 {Vibrio 99.66
d1y7pa277 Hypothetical protein AF1403, N-terminal domain {Ar 98.02
d1ygya378 Phosphoglycerate dehydrogenase, regulatory (C-term 97.79
d1sc6a384 Phosphoglycerate dehydrogenase, regulatory (C-term 97.6
d2pc6a277 Acetolactate synthase small subunit, IlvH {Nitroso 97.47
d2fgca278 Acetolactate synthase small subunit, IlvH {Thermot 97.38
d2f1fa176 Acetolactate synthase small subunit, IlvH {Escheri 96.76
d2f06a270 Hypothetical protein BT0572 {Bacteroides thetaiota 96.34
d2f06a171 Hypothetical protein BT0572 {Bacteroides thetaiota 96.22
d2hmfa267 Aspartokinase {Methanococcus jannaschii [TaxId: 21 95.12
d2hmfa3100 Aspartokinase {Methanococcus jannaschii [TaxId: 21 95.1
d2cdqa375 Aspartokinase {Thale cress (Arabidopsis thaliana) 94.02
d2qmwa280 Prephenate dehydratase C-terminal domain {Staphylo 93.23
d2cdqa291 Aspartokinase {Thale cress (Arabidopsis thaliana) 92.03
d1phza197 Phenylalanine hydroxylase N-terminal domain {Rat ( 92.02
d1nvmb1157 Acetaldehyde dehydrogenase (acylating) {Pseudomona 90.73
d2d13a1226 Hypothetical protein PH1257 {Archaeon Pyrococcus h 87.31
d1ekxa2160 Aspartate carbamoyltransferase catalytic subunit { 87.02
d1zhva266 Hypothetical protein Atu0741 {Agrobacterium tumefa 86.96
d1ni5a1227 tRNA-Ile-lysidine synthetase, TilS, N-terminal dom 86.39
d1pvva2163 Ornithine transcarbamoylase {Archaeon Pyrococcus f 80.19
>d1jkxa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase, GART {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Glycinamide ribonucleotide transformylase, GART
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.2e-43  Score=320.95  Aligned_cols=193  Identities=28%  Similarity=0.406  Sum_probs=176.9

Q ss_pred             ceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeCCCC--C--hhHHHHHHHhc-
Q 018502          129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE--N--EREEELLELVQ-  203 (355)
Q Consensus       129 ~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~--~--~~~~~~~~~l~-  203 (355)
                      +|||||+||.|++|++|+++++.++++++|++|+||++   ++...++|++.++|......+.  +  ..++++.+.++ 
T Consensus         1 MkIaVl~SG~GSnL~aLl~a~~~~~l~~~I~~Visn~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   77 (209)
T d1jkxa_           1 MNIVVLISGNGSNLQAIIDACKTNKIKGTVRAVFSNKA---DAFGLERARQAGIATHTLIASAFDSREAYDRELIHEIDM   77 (209)
T ss_dssp             CEEEEEESSCCHHHHHHHHHHHTTSSSSEEEEEEESCT---TCHHHHHHHHTTCEEEECCGGGCSSHHHHHHHHHHHHGG
T ss_pred             CEEEEEEecCcHHHHHHHHHHHcCCCCCEEEEEEeCCC---CcccchhhhccccceeeeeccccccccchHHHHHHHHHh
Confidence            59999999999999999999999999999999999874   4578899999999998765321  1  23456777776 


Q ss_pred             -CCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChHHHhhcCCCeEEecCCCCCCCCCchHHHHHHHh
Q 018502          204 -NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDA  282 (355)
Q Consensus       204 -~~Dlivla~y~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~~l~~~~~~~INiHpslLP~yrG~~p~~~A~~~  282 (355)
                       ++|++|++|||+                              |+|+++++.++.++||+|||+||.|||++|++||+.+
T Consensus        78 ~~~Dliv~~g~~~------------------------------il~~~~l~~~~~~~iN~HpslLP~~rG~~p~~~~i~~  127 (209)
T d1jkxa_          78 YAPDVVVLAGFMR------------------------------ILSPAFVSHYAGRLLNIHPSLLPKYPGLHTHRQALEN  127 (209)
T ss_dssp             GCCSEEEESSCCS------------------------------CCCHHHHHHTTTSEEEEESSCTTSCCSSCHHHHHHHT
T ss_pred             cCCCEEEEeeeeE------------------------------ecChhhhcccccCEEEeCCchhcccCCcCchhHHHHC
Confidence             899999999999                              9999999999999999999999999999999999999


Q ss_pred             CCcEeEEEEEEecCcCCCCCeeeeEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeecCCceeeC
Q 018502          283 GVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF  355 (355)
Q Consensus       283 G~~~~G~T~H~v~~~~D~G~Ii~q~~~~I~~~dt~~~l~~k~~~~~~~~l~~~i~~~~~~~~~~~~~~~tvvf  355 (355)
                      |++.+|+|+|+|++++|+||||.|+.++|.++||.++|++|+.+++++++.++++.+++|++..++ +++.++
T Consensus       128 g~~~~G~t~h~~~~~~D~G~Ii~q~~~~i~~~d~~~~l~~k~~~~e~~l~~~~i~~i~~~~i~~~~-~~~~~~  199 (209)
T d1jkxa_         128 GDEEHGTSVHFVTDELDGGPVILQAKVPVFAGDSEDDITARVQTQEHAIYPLVISWFADGRLKMHE-NAAWLD  199 (209)
T ss_dssp             TCSEEEEEEEECCSSTTCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEET-TEEEET
T ss_pred             CCeeecceEEEecCCCCcccEeeEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeEEcC-CEEEEC
Confidence            999999999999999999999999999999999999999999999999999999999999999886 777653
>d1meoa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase, GART {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1zgha2 c.65.1.1 (A:1-164) Methionyl-tRNAfmet formyltransferase {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]} Back     information, alignment and structure
>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2cdqa3 d.58.18.10 (A:420-494) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} Back     information, alignment and structure
>d2d13a1 c.26.2.1 (A:2-227) Hypothetical protein PH1257 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1zhva2 d.58.18.8 (A:62-127) Hypothetical protein Atu0741 {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure