Citrus Sinensis ID: 018506
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 355 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SUC0 | 347 | Probable 3-hydroxyisobuty | yes | no | 0.977 | 1.0 | 0.713 | 1e-145 | |
| Q99L13 | 335 | 3-hydroxyisobutyrate dehy | yes | no | 0.833 | 0.883 | 0.512 | 7e-80 | |
| Q2HJD7 | 336 | 3-hydroxyisobutyrate dehy | yes | no | 0.830 | 0.877 | 0.507 | 5e-79 | |
| P31937 | 336 | 3-hydroxyisobutyrate dehy | yes | no | 0.808 | 0.854 | 0.521 | 6e-79 | |
| Q5R5E7 | 336 | 3-hydroxyisobutyrate dehy | yes | no | 0.808 | 0.854 | 0.521 | 7e-79 | |
| P29266 | 335 | 3-hydroxyisobutyrate dehy | yes | no | 0.833 | 0.883 | 0.503 | 3e-78 | |
| Q54CX6 | 321 | Probable 3-hydroxyisobuty | yes | no | 0.808 | 0.894 | 0.491 | 5e-70 | |
| Q9XTI0 | 299 | Probable 3-hydroxyisobuty | yes | no | 0.802 | 0.953 | 0.451 | 3e-62 | |
| Q9V8M5 | 324 | Probable 3-hydroxyisobuty | yes | no | 0.808 | 0.885 | 0.435 | 5e-62 | |
| P28811 | 298 | 3-hydroxyisobutyrate dehy | yes | no | 0.825 | 0.983 | 0.402 | 1e-56 |
| >sp|Q9SUC0|3HIDH_ARATH Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=At4g20930 PE=2 SV=3 | Back alignment and function desciption |
|---|
Score = 514 bits (1325), Expect = e-145, Method: Compositional matrix adjust.
Identities = 252/353 (71%), Positives = 297/353 (84%), Gaps = 6/353 (1%)
Query: 3 MAICRVRVLPSLSNLKSTVLLSSPFQSSAMRRFFSSQVPSCQFESVGFIGLGNMGFRMAS 62
MAI R + L LS K+ F S ++ RF SS S QF++VGFIGLGNMGFRM +
Sbjct: 1 MAIRRAQTLLCLSKFKTN------FVSGSLHRFSSSSQNSNQFQNVGFIGLGNMGFRMVN 54
Query: 63 NLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122
NL++AGYK+ VHD+N +VMKMF++MGV ++ETP+EVA+ S+VVITMLPSSSHV+DVY G
Sbjct: 55 NLIRAGYKVTVHDINRDVMKMFTEMGVSSRETPYEVAQDSEVVITMLPSSSHVMDVYTGT 114
Query: 123 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVL 182
NGLL G N +RP L IDSSTIDPQT+R IS AVSNC LKEK+D+WE PVMLDAPVSGGVL
Sbjct: 115 NGLLLGENDIRPALFIDSSTIDPQTTRKISLAVSNCNLKEKRDNWEKPVMLDAPVSGGVL 174
Query: 183 AAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVS 242
AAEAGTLTFMVGG EDAY AA+P+ SMG+ +IYCGG+GNG+AAKICNNL MAVSMLG S
Sbjct: 175 AAEAGTLTFMVGGPEDAYLAARPILQSMGRTSIYCGGSGNGSAAKICNNLAMAVSMLGTS 234
Query: 243 EALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAK 302
EAL LGQSLGISASTLT++LN+SS RCWSSD+YNPVPGVM+GVP+SR+Y GGFASKLMAK
Sbjct: 235 EALALGQSLGISASTLTEVLNTSSGRCWSSDAYNPVPGVMKGVPSSRDYNGGFASKLMAK 294
Query: 303 DLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGKDEV 355
DLNLA ASA+EVG PL S+AQ+IY K+CE GH++KDFSCVF+H+Y GKDEV
Sbjct: 295 DLNLAAASAEEVGHKSPLISKAQEIYKKMCEEGHETKDFSCVFRHFYNGKDEV 347
|
Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 1 |
| >sp|Q99L13|3HIDH_MOUSE 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Mus musculus GN=Hibadh PE=2 SV=1 | Back alignment and function description |
|---|
Score = 297 bits (761), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 161/314 (51%), Positives = 201/314 (64%), Gaps = 18/314 (5%)
Query: 34 RFFSSQVPSCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKE 93
R +S+ P VGFIGLGNMG MA NLMK GY + ++DV +V K F + G
Sbjct: 33 RSMASKTP------VGFIGLGNMGNPMAKNLMKHGYPLILYDVFPDVCKEFKEAGEQVAS 86
Query: 94 TPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISA 153
+P EVAE +D +ITMLPSS + ++VY+G NG+L+ + LLIDSSTIDP S+ ++
Sbjct: 87 SPAEVAEKADRIITMLPSSMNAVEVYSGANGILK--KVKKGSLLIDSSTIDPSVSKELAK 144
Query: 154 AVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKN 213
V EK + V +DAPVSGGV AA +G LTFMVGG ED + AA+ L MG N
Sbjct: 145 EV------EKMGA----VFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLECMGSN 194
Query: 214 TIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSD 273
+YCG G G +AKICNN+ +A+SM+G +EA+ LG G+ L KILN SS RCWSSD
Sbjct: 195 VVYCGAVGTGQSAKICNNMLLAISMIGTAEAMNLGIRSGLDPKLLAKILNMSSGRCWSSD 254
Query: 274 SYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCE 333
+YNPVPGVM GVP+S NY GGF + LMAKDL LA SA L S A IY +C
Sbjct: 255 TYNPVPGVMHGVPSSNNYQGGFGTTLMAKDLGLAQDSATSTKTPILLGSLAHQIYRMMCS 314
Query: 334 NGHDSKDFSCVFQH 347
G+ KDFS VFQ+
Sbjct: 315 KGYSKKDFSSVFQY 328
|
Mus musculus (taxid: 10090) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 1 |
| >sp|Q2HJD7|3HIDH_BOVIN 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Bos taurus GN=HIBADH PE=2 SV=1 | Back alignment and function description |
|---|
Score = 295 bits (754), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 159/313 (50%), Positives = 201/313 (64%), Gaps = 18/313 (5%)
Query: 34 RFFSSQVPSCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKE 93
R +S+ P VGFIG+GNMG MA NLMK GY + ++DV + K F D G
Sbjct: 34 RSMASKTP------VGFIGVGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFLDAGEQVVS 87
Query: 94 TPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISA 153
+P +VAE +D +ITMLP+S + ++ Y+G NG+L+ + LLIDSSTIDP S+ ++
Sbjct: 88 SPADVAEKADRIITMLPTSINAIEAYSGANGILK--KVKKGSLLIDSSTIDPMVSKELAK 145
Query: 154 AVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKN 213
V EK + V +DAPVSGGV AA +G LTFMVGG E+ + AA+ L MG N
Sbjct: 146 EV------EKMGA----VFMDAPVSGGVGAARSGNLTFMVGGVEEEFAAAQELLGCMGSN 195
Query: 214 TIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSD 273
+YCG G G AAKICNNL +A+SM+G +EA+ LG LG+ L KILN SS RCWSSD
Sbjct: 196 VVYCGAVGTGQAAKICNNLLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSD 255
Query: 274 SYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCE 333
+YNPVPGVM+GVP++ NY GGF + LMAKDL LA SA L SQA IY +C
Sbjct: 256 TYNPVPGVMDGVPSANNYQGGFGTTLMAKDLGLAQDSATSTKSPILLGSQAHQIYRMMCA 315
Query: 334 NGHDSKDFSCVFQ 346
G+ KDFS VFQ
Sbjct: 316 KGYSKKDFSSVFQ 328
|
Bos taurus (taxid: 9913) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 1 |
| >sp|P31937|3HIDH_HUMAN 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Homo sapiens GN=HIBADH PE=1 SV=2 | Back alignment and function description |
|---|
Score = 294 bits (753), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 156/299 (52%), Positives = 195/299 (65%), Gaps = 12/299 (4%)
Query: 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 107
VGFIGLGNMG MA NLMK GY + ++DV + K F D G +P +VAE +D +IT
Sbjct: 42 VGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIIT 101
Query: 108 MLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW 167
MLP+S + ++ Y+G NG+L+ + LLIDSSTIDP S+ ++ V EK +
Sbjct: 102 MLPTSINAIEAYSGANGILK--KVKKGSLLIDSSTIDPAVSKELAKEV------EKMGA- 152
Query: 168 ENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAK 227
V +DAPVSGGV AA +G LTFMVGG ED + AA+ L MG N +YCG G G AAK
Sbjct: 153 ---VFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAK 209
Query: 228 ICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPA 287
ICNN+ +A+SM+G +EA+ LG LG+ L KILN SS RCWSSD+YNPVPGVM+GVP+
Sbjct: 210 ICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPS 269
Query: 288 SRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 346
+ NY GGF + LMAKDL LA SA L S A IY +C G+ KDFS VFQ
Sbjct: 270 ANNYQGGFGTTLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQ 328
|
Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 1 |
| >sp|Q5R5E7|3HIDH_PONAB 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Pongo abelii GN=HIBADH PE=2 SV=1 | Back alignment and function description |
|---|
Score = 294 bits (752), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 156/299 (52%), Positives = 195/299 (65%), Gaps = 12/299 (4%)
Query: 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 107
VGFIGLGNMG MA NLMK GY + ++DV + K F D G +P +VAE +D +IT
Sbjct: 42 VGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIIT 101
Query: 108 MLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW 167
MLP+S + ++ Y+G NG+L+ + LLIDSSTIDP S+ ++ V EK +
Sbjct: 102 MLPTSINAIEAYSGANGILK--KVKKGSLLIDSSTIDPAVSKELAKEV------EKMGA- 152
Query: 168 ENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAK 227
V +DAPVSGGV AA +G LTFMVGG ED + AA+ L MG N +YCG G G AAK
Sbjct: 153 ---VFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAK 209
Query: 228 ICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPA 287
ICNN+ +A+SM+G +EA+ LG LG+ L KILN SS RCWSSD+YNPVPGVM+GVP+
Sbjct: 210 ICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPS 269
Query: 288 SRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 346
+ NY GGF + LMAKDL LA SA L S A IY +C G+ KDFS VFQ
Sbjct: 270 ANNYQGGFGATLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQ 328
|
Pongo abelii (taxid: 9601) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 1 |
| >sp|P29266|3HIDH_RAT 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Hibadh PE=1 SV=3 | Back alignment and function description |
|---|
Score = 291 bits (746), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 158/314 (50%), Positives = 203/314 (64%), Gaps = 18/314 (5%)
Query: 34 RFFSSQVPSCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKE 93
R +S+ P VGFIGLGNMG MA NL+K GY + ++DV +V K F + G
Sbjct: 33 RSMASKTP------VGFIGLGNMGNPMAKNLIKHGYPLILYDVFPDVCKEFKEAGEQVAS 86
Query: 94 TPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISA 153
+P +VAE +D +ITMLPSS + ++VY+G NG+L+ + LLIDSSTIDP S+ ++
Sbjct: 87 SPADVAEKADRIITMLPSSMNSIEVYSGANGILK--KVKKGSLLIDSSTIDPSVSKELAK 144
Query: 154 AVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKN 213
V EK + V +DAPVSGGV AA +G LTFMVGG E+ + AA+ L MG N
Sbjct: 145 EV------EKMGA----VFMDAPVSGGVGAARSGNLTFMVGGVENEFAAAQELLGCMGSN 194
Query: 214 TIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSD 273
+YCG G+G +AKICNN+ +A+SM+G +EA+ LG G+ L KILN SS RCWSSD
Sbjct: 195 VLYCGAVGSGQSAKICNNMLLAISMIGTAEAMNLGIRSGLDPKLLAKILNMSSGRCWSSD 254
Query: 274 SYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCE 333
+YNPVPGVM+GVP+S NY GGF + LMAKDL LA SA L S A IY +C
Sbjct: 255 TYNPVPGVMDGVPSSNNYQGGFGTTLMAKDLGLAQDSATSTKTPILLGSVAHQIYRMMCS 314
Query: 334 NGHDSKDFSCVFQH 347
G+ KDFS VFQ+
Sbjct: 315 KGYSKKDFSSVFQY 328
|
Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 1 |
| >sp|Q54CX6|3HIDH_DICDI Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Dictyostelium discoideum GN=hibA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 265 bits (676), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 148/301 (49%), Positives = 193/301 (64%), Gaps = 14/301 (4%)
Query: 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVV 105
++VGFIGLGNMG A NL+K G+ + V D++ + M + G +P EVA+ +DV+
Sbjct: 23 KTVGFIGLGNMGGHQAINLIKKGHNLIVFDMSKDNMNRLKEKGAKIANSPAEVAKEADVI 82
Query: 106 ITMLPSSSHVLDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEKK 164
+TMLP+S+HV +VY G NG+ Q +VRP LL+DSSTIDP T+R +++ I K+ +
Sbjct: 83 VTMLPASAHVKNVYCGENGIFQ---TVRPGTLLLDSSTIDPATAREVAS-----IAKKHQ 134
Query: 165 DSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGA 224
+ MLD PVSGG AEAGTLTFMVGGSE + AK MGKN ++CG G G
Sbjct: 135 ST-----MLDCPVSGGTGGAEAGTLTFMVGGSEQDFNTAKTYLECMGKNIVHCGDVGTGQ 189
Query: 225 AAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEG 284
AK+CNNL + +SM+ VSEA+ LG G+ L I N+SSARCW+S+ YNP PGV+E
Sbjct: 190 VAKVCNNLVLGISMIAVSEAMNLGVKQGMDPKKLAGIFNTSSARCWTSELYNPCPGVIET 249
Query: 285 VPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCV 344
PASR Y GGF S LM KDL LA+ SAK +G L + A +Y L G KDFS V
Sbjct: 250 SPASRGYTGGFGSALMTKDLGLAVDSAKSIGEPLLLGNSAHQLYTLLVAKGDGQKDFSVV 309
Query: 345 F 345
+
Sbjct: 310 Y 310
|
Dictyostelium discoideum (taxid: 44689) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 1 |
| >sp|Q9XTI0|3HIDH_CAEEL Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=B0250.5 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 239 bits (609), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 136/301 (45%), Positives = 187/301 (62%), Gaps = 16/301 (5%)
Query: 49 GFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITM 108
GFIGLGNMG MA NL+K G K+ V+DVN V++ F G P ++A AS +IT+
Sbjct: 5 GFIGLGNMGGHMARNLIKNGKKLIVYDVNKAVVQEFKAEGCEVAAHPADIAAASKEIITV 64
Query: 109 LPSSSHVLDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW 167
LPSS HV VY G G+ + +++P L +DSSTID S ++ A + +LK +
Sbjct: 65 LPSSPHVKAVYQGEAGIFK---TIQPGTLCMDSSTIDQIVSLEVAQAAA--LLKAE---- 115
Query: 168 ENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDA-YQAAKPLFLSMGKNTIYCGGAGNGAAA 226
+DAP+SGGV A+ TLTFMVG DA ++ A+ + MGKN + G GNG AA
Sbjct: 116 ----YIDAPISGGVTGAQQATLTFMVGAGNDATFKRAEAVLSLMGKNIVNLGAVGNGTAA 171
Query: 227 KICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVP 286
KICNN+ + + M+ V+E + LG S+G+ A L I+N+SS RCWSSD+YNPVPGV+E +P
Sbjct: 172 KICNNMLLGIQMVAVAETMNLGISMGLDAKALAGIVNTSSGRCWSSDTYNPVPGVIENIP 231
Query: 287 ASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCEN-GHDSKDFSCVF 345
+ R Y GGF + LMAKDL+LA ++ P+ S A IY L + + +KDF V+
Sbjct: 232 SCRGYAGGFGTTLMAKDLSLAQNASTNTQAPTPMGSLAHQIYRILARDPQYQAKDFGVVY 291
Query: 346 Q 346
Q
Sbjct: 292 Q 292
|
Caenorhabditis elegans (taxid: 6239) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 1 |
| >sp|Q9V8M5|3HIDH_DROME Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Drosophila melanogaster GN=CG15093 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 238 bits (607), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 131/301 (43%), Positives = 180/301 (59%), Gaps = 14/301 (4%)
Query: 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVV 105
+++GF+GLGNMG MASNL+KAG+K+ V D++ + G E+A+ SD V
Sbjct: 29 KNIGFVGLGNMGANMASNLIKAGHKLHVFDISKPACDGLAAKGATVYAKTSELAKNSDFV 88
Query: 106 ITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKD 165
ITMLP+++ V Y+ + + + IDSSTI P +++ +KK
Sbjct: 89 ITMLPNNAIVDASYDE----MTADGVNKDTIFIDSSTISPDLVKSL----------QKKI 134
Query: 166 SWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAA 225
S + +DAPVSGGV AE TLTFMVGG+E Y A K + MGK +CG G G A
Sbjct: 135 SAKGARFIDAPVSGGVPGAEQATLTFMVGGTEAEYNAVKAVLECMGKKITHCGVYGMGQA 194
Query: 226 AKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGV 285
AK+CNN+ +A+SM+GVSEA+ L G+ A+ +I+NSS+ RCW+S+ YNPVPGV
Sbjct: 195 AKLCNNMMLAISMIGVSEAMNLAVRQGLDANVFAEIINSSTGRCWASEIYNPVPGVCPSA 254
Query: 286 PASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVF 345
PA+R+Y GGF+S L+ KDL LA A PL S A +Y LC+ G +KDFS V+
Sbjct: 255 PANRDYAGGFSSALITKDLGLASGVANASNSPIPLGSLAHKVYQSLCDKGLGNKDFSVVY 314
Query: 346 Q 346
Sbjct: 315 D 315
|
Drosophila melanogaster (taxid: 7227) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 1 |
| >sp|P28811|MMSB_PSEAE 3-hydroxyisobutyrate dehydrogenase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=mmsB PE=2 SV=1 | Back alignment and function description |
|---|
Score = 220 bits (560), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 124/308 (40%), Positives = 182/308 (59%), Gaps = 15/308 (4%)
Query: 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 107
+ F+GLGNMG MA+NL+KAG+++ V D+ + + G ++ + E ++VVI+
Sbjct: 4 IAFLGLGNMGGPMAANLLKAGHRVNVFDLQPKAVLGLVEQGAQGADSALQCCEGAEVVIS 63
Query: 108 MLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW 167
MLP+ HV +Y G +GLL LLID STI P+T+R ++ A + L
Sbjct: 64 MLPAGQHVESLYLGDDGLLA--RVAGKPLLIDCSTIAPETARKVAEAAAAKGL------- 114
Query: 168 ENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAK 227
+LDAPVSGGV A AGTL+F+VGG + + A+P+ +MG+N + G G G AK
Sbjct: 115 ---TLLDAPVSGGVGGARAGTLSFIVGGPAEGFARARPVLENMGRNIFHAGDHGAGQVAK 171
Query: 228 ICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPA 287
ICNN+ + + M G +EAL LG G+ + L++++ SS W+ + YNP PGVM PA
Sbjct: 172 ICNNMLLGILMAGTAEALALGVKNGLDPAVLSEVMKQSSGGNWALNLYNPWPGVMPQAPA 231
Query: 288 SRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYA--KLCENGHDSKDFSCVF 345
S Y GGF +LM KDL LALA+A+ V PL + A+++++ + H+ DFS +
Sbjct: 232 SNGYAGGFQVRLMNKDLGLALANAQAVQASTPLGALARNLFSLHAQADAEHEGLDFSSI- 290
Query: 346 QHYYGGKD 353
Q Y GKD
Sbjct: 291 QKLYRGKD 298
|
Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) (taxid: 208964) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 355 | ||||||
| 224061611 | 347 | predicted protein [Populus trichocarpa] | 0.977 | 1.0 | 0.807 | 1e-157 | |
| 255564371 | 388 | 3-hydroxyisobutyrate dehydrogenase, puta | 0.985 | 0.902 | 0.75 | 1e-152 | |
| 225444069 | 345 | PREDICTED: probable 3-hydroxyisobutyrate | 0.966 | 0.994 | 0.742 | 1e-151 | |
| 18415593 | 347 | 3-hydroxyisobutyrate dehydrogenase [Arab | 0.977 | 1.0 | 0.713 | 1e-143 | |
| 21555592 | 347 | 3-hydroxyisobutyrate dehydrogenase-like | 0.977 | 1.0 | 0.711 | 1e-143 | |
| 449435530 | 353 | PREDICTED: probable 3-hydroxyisobutyrate | 0.921 | 0.926 | 0.746 | 1e-142 | |
| 7431189 | 371 | 3-hydroxyisobutyrate dehydrogenase homol | 0.977 | 0.935 | 0.668 | 1e-139 | |
| 356533081 | 350 | PREDICTED: probable 3-hydroxyisobutyrate | 0.932 | 0.945 | 0.716 | 1e-138 | |
| 363814571 | 350 | uncharacterized protein LOC100814043 [Gl | 0.971 | 0.985 | 0.698 | 1e-137 | |
| 297799966 | 372 | hypothetical protein ARALYDRAFT_329506 [ | 0.980 | 0.935 | 0.663 | 1e-136 |
| >gi|224061611|ref|XP_002300566.1| predicted protein [Populus trichocarpa] gi|222847824|gb|EEE85371.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 561 bits (1445), Expect = e-157, Method: Compositional matrix adjust.
Identities = 285/353 (80%), Positives = 307/353 (86%), Gaps = 6/353 (1%)
Query: 3 MAICRVRVLPSLSNLKSTVLLSSPFQSSAMRRFFSSQVPSCQFESVGFIGLGNMGFRMAS 62
MAICR+R SLS LK+ SPF FSS S QFESVGFIGLGNMG RMA+
Sbjct: 1 MAICRLRA--SLSLLKT----KSPFFHYVPLHGFSSSQLSSQFESVGFIGLGNMGSRMAN 54
Query: 63 NLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122
NL+K GYK+AVHD+NCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVY GP
Sbjct: 55 NLIKNGYKVAVHDINCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYTGP 114
Query: 123 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVL 182
NGLL+ N +RPQLLIDSSTIDPQTSR +S AVSNCILKEKKD WE PVMLDAPVSGGVL
Sbjct: 115 NGLLRCANLMRPQLLIDSSTIDPQTSRKVSVAVSNCILKEKKDHWEKPVMLDAPVSGGVL 174
Query: 183 AAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVS 242
AAEAGTLTFMVGGSEDAY AAKPLFLSMGKN IYCGGAG G+AAKICNNL +AVSMLGVS
Sbjct: 175 AAEAGTLTFMVGGSEDAYLAAKPLFLSMGKNAIYCGGAGTGSAAKICNNLALAVSMLGVS 234
Query: 243 EALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAK 302
EA LGQSLGISA TLTK+LN+SSARCWSSDSYNPVPGVMEGVPASRNY GGFASKLMAK
Sbjct: 235 EAFVLGQSLGISAGTLTKVLNTSSARCWSSDSYNPVPGVMEGVPASRNYAGGFASKLMAK 294
Query: 303 DLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGKDEV 355
DLNLA SAKEVG+ CPLT QAQ+IY +LC++GH+SKDFSC F+HYY G+DE+
Sbjct: 295 DLNLAATSAKEVGLQCPLTYQAQEIYTELCKDGHESKDFSCAFRHYYSGQDEL 347
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255564371|ref|XP_002523182.1| 3-hydroxyisobutyrate dehydrogenase, putative [Ricinus communis] gi|223537589|gb|EEF39213.1| 3-hydroxyisobutyrate dehydrogenase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 543 bits (1399), Expect = e-152, Method: Compositional matrix adjust.
Identities = 267/356 (75%), Positives = 303/356 (85%), Gaps = 6/356 (1%)
Query: 1 MTMAI-CRVRVLPSLSNLKSTVLLSSPFQSSAMRRFFSSQVPSCQFESVGFIGLGNMGFR 59
++MA+ CRVR L S S+ +S P M F +S S QFE+VGFIGLGNMG R
Sbjct: 38 LSMAMYCRVRSLLSSVRTNSSFSISVP-----MHSFSTSPASSSQFENVGFIGLGNMGSR 92
Query: 60 MASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVY 119
MA NL+KAGYK+AVHD+NCNV+KMF+DMGV TKETP EVAEAS++VITMLPS+SHVLDVY
Sbjct: 93 MAQNLIKAGYKVAVHDINCNVIKMFTDMGVSTKETPLEVAEASNIVITMLPSTSHVLDVY 152
Query: 120 NGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSG 179
NGPNGLLQGG +RPQL I+SSTIDP+TSR +SAAVSN ++KEK +WE P+MLDAPVSG
Sbjct: 153 NGPNGLLQGGTFLRPQLFINSSTIDPETSRKLSAAVSNFVVKEKTGNWEKPLMLDAPVSG 212
Query: 180 GVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSML 239
GVLAAEAGTLTFMVGGS+DAY AAKPLFLSMGK+TIYCGGAG G+AAKICNNL MAVSML
Sbjct: 213 GVLAAEAGTLTFMVGGSKDAYLAAKPLFLSMGKSTIYCGGAGTGSAAKICNNLAMAVSML 272
Query: 240 GVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKL 299
GVSEAL LGQSLGI A TLTK+ NSSSARCWSSDSYNPVPGVMEGVPASRNY GGFASKL
Sbjct: 273 GVSEALALGQSLGIDADTLTKVFNSSSARCWSSDSYNPVPGVMEGVPASRNYAGGFASKL 332
Query: 300 MAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGKDEV 355
M KDLNLA ASAK V CPLT QA +IY ++CENGH+++DFSCVF+HYY GKD++
Sbjct: 333 MTKDLNLAAASAKAVDFTCPLTQQALEIYTEMCENGHETEDFSCVFRHYYFGKDKL 388
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225444069|ref|XP_002264140.1| PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial [Vitis vinifera] gi|297740847|emb|CBI31029.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 540 bits (1391), Expect = e-151, Method: Compositional matrix adjust.
Identities = 262/353 (74%), Positives = 298/353 (84%), Gaps = 10/353 (2%)
Query: 3 MAICRVR-VLPSLSNLKSTVLLSSPFQSSAMRRFFSSQVPSCQFESVGFIGLGNMGFRMA 61
MAI RVR +LP S + +V S++ RF+SS S FE+VGFIGLGNMG RMA
Sbjct: 1 MAISRVRSLLPFSSAIHKSV--------SSIYRFYSS-TSSTHFENVGFIGLGNMGSRMA 51
Query: 62 SNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 121
+NL+ AGYK+AVHD+N VM+MF++ GVPTKETPFE+AE SDVVITMLPSSSHVLDVY G
Sbjct: 52 NNLIMAGYKVAVHDINHEVMRMFAERGVPTKETPFEIAETSDVVITMLPSSSHVLDVYTG 111
Query: 122 PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGV 181
PNGL+ GN +RP L IDSSTIDPQTSR +S AVSNC LK++KD WE P++LDAPVSGGV
Sbjct: 112 PNGLIHDGNLLRPMLFIDSSTIDPQTSRRLSVAVSNCGLKQRKDIWETPIILDAPVSGGV 171
Query: 182 LAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGV 241
LAAE GTLTFMVGGSE+AY AAK LFLSMGKNTIYCGGAGNG+AAKICNNL MAVSMLGV
Sbjct: 172 LAAETGTLTFMVGGSEEAYLAAKSLFLSMGKNTIYCGGAGNGSAAKICNNLAMAVSMLGV 231
Query: 242 SEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMA 301
SEA LGQSLGI+A TL KI NSSSARCWSSDSYNPVPGVMEGVP+SRNY GGFA+KLMA
Sbjct: 232 SEAFALGQSLGIAAGTLAKIFNSSSARCWSSDSYNPVPGVMEGVPSSRNYVGGFATKLMA 291
Query: 302 KDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGKDE 354
KDLNLA SAKE G+ CPLTSQA++I+ +LC+ GH++KDFSCVF+HYY GKDE
Sbjct: 292 KDLNLAAESAKETGLTCPLTSQAKEIFVELCKEGHEAKDFSCVFRHYYSGKDE 344
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18415593|ref|NP_567617.1| 3-hydroxyisobutyrate dehydrogenase [Arabidopsis thaliana] gi|30316393|sp|Q9SUC0.3|3HIDH_ARATH RecName: Full=Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial; Short=HIBADH; Flags: Precursor gi|105830240|gb|ABF74718.1| At4g20930 [Arabidopsis thaliana] gi|110737072|dbj|BAF00489.1| 3-hydroxyisobutyrate dehydrogenase -like protein [Arabidopsis thaliana] gi|332658977|gb|AEE84377.1| 3-hydroxyisobutyrate dehydrogenase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust.
Identities = 252/353 (71%), Positives = 297/353 (84%), Gaps = 6/353 (1%)
Query: 3 MAICRVRVLPSLSNLKSTVLLSSPFQSSAMRRFFSSQVPSCQFESVGFIGLGNMGFRMAS 62
MAI R + L LS K+ F S ++ RF SS S QF++VGFIGLGNMGFRM +
Sbjct: 1 MAIRRAQTLLCLSKFKTN------FVSGSLHRFSSSSQNSNQFQNVGFIGLGNMGFRMVN 54
Query: 63 NLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122
NL++AGYK+ VHD+N +VMKMF++MGV ++ETP+EVA+ S+VVITMLPSSSHV+DVY G
Sbjct: 55 NLIRAGYKVTVHDINRDVMKMFTEMGVSSRETPYEVAQDSEVVITMLPSSSHVMDVYTGT 114
Query: 123 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVL 182
NGLL G N +RP L IDSSTIDPQT+R IS AVSNC LKEK+D+WE PVMLDAPVSGGVL
Sbjct: 115 NGLLLGENDIRPALFIDSSTIDPQTTRKISLAVSNCNLKEKRDNWEKPVMLDAPVSGGVL 174
Query: 183 AAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVS 242
AAEAGTLTFMVGG EDAY AA+P+ SMG+ +IYCGG+GNG+AAKICNNL MAVSMLG S
Sbjct: 175 AAEAGTLTFMVGGPEDAYLAARPILQSMGRTSIYCGGSGNGSAAKICNNLAMAVSMLGTS 234
Query: 243 EALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAK 302
EAL LGQSLGISASTLT++LN+SS RCWSSD+YNPVPGVM+GVP+SR+Y GGFASKLMAK
Sbjct: 235 EALALGQSLGISASTLTEVLNTSSGRCWSSDAYNPVPGVMKGVPSSRDYNGGFASKLMAK 294
Query: 303 DLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGKDEV 355
DLNLA ASA+EVG PL S+AQ+IY K+CE GH++KDFSCVF+H+Y GKDEV
Sbjct: 295 DLNLAAASAEEVGHKSPLISKAQEIYKKMCEEGHETKDFSCVFRHFYNGKDEV 347
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|21555592|gb|AAM63893.1| 3-hydroxyisobutyrate dehydrogenase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust.
Identities = 251/353 (71%), Positives = 296/353 (83%), Gaps = 6/353 (1%)
Query: 3 MAICRVRVLPSLSNLKSTVLLSSPFQSSAMRRFFSSQVPSCQFESVGFIGLGNMGFRMAS 62
MAI R + L LS K+ + S + RF SS S QF++VGFIGLGNMGFRM +
Sbjct: 1 MAIRRAQTLLCLSKFKTNFVFGS------LHRFSSSSQNSNQFQNVGFIGLGNMGFRMVN 54
Query: 63 NLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122
NL++AGYK+ VHD+N +VMKMF++MGV ++ETP+EVA+ S+VVITMLPSSSHV+DVY G
Sbjct: 55 NLIRAGYKVTVHDINRDVMKMFTEMGVSSRETPYEVAQDSEVVITMLPSSSHVMDVYTGT 114
Query: 123 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVL 182
NGLL G N +RP L IDSSTIDPQT+R IS AVSNC LKEK+D+WE PVMLDAPVSGGVL
Sbjct: 115 NGLLLGENDIRPALFIDSSTIDPQTTRKISLAVSNCNLKEKRDNWEKPVMLDAPVSGGVL 174
Query: 183 AAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVS 242
AAEAGTLTFMVGG EDAY AA+P+ SMG+ +IYCGG+GNG+AAKICNNL MAVSMLG S
Sbjct: 175 AAEAGTLTFMVGGPEDAYLAARPILQSMGRTSIYCGGSGNGSAAKICNNLAMAVSMLGTS 234
Query: 243 EALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAK 302
EAL LGQSLGISASTLT++LN+SS RCWSSD+YNPVPGVM+GVP+SR+Y GGFASKLMAK
Sbjct: 235 EALALGQSLGISASTLTEVLNTSSGRCWSSDAYNPVPGVMKGVPSSRDYNGGFASKLMAK 294
Query: 303 DLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGKDEV 355
DLNLA ASA+EVG PL S+AQ+IY K+CE GH++KDFSCVF+H+Y GKDEV
Sbjct: 295 DLNLAAASAEEVGHKSPLISKAQEIYKKMCEEGHETKDFSCVFRHFYNGKDEV 347
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449435530|ref|XP_004135548.1| PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust.
Identities = 245/328 (74%), Positives = 286/328 (87%), Gaps = 1/328 (0%)
Query: 28 QSSAMRRFFSSQVPSCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM 87
++ ++RRFFS+ + F+S+GFIGLGNMG RMA+NL+KAGY M VHD+N N MK +SD+
Sbjct: 27 ETPSIRRFFSADSLA-SFQSIGFIGLGNMGTRMANNLIKAGYNMVVHDINRNTMKNYSDL 85
Query: 88 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQT 147
GV TKETPFEVAEASDVVITMLPS SHVLDVYNG +GLL GG +RP LLIDSSTIDPQT
Sbjct: 86 GVATKETPFEVAEASDVVITMLPSPSHVLDVYNGSHGLLHGGCHIRPWLLIDSSTIDPQT 145
Query: 148 SRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLF 207
SR +SA VS+ ILKEK+ SWE+PVMLDAPVSGGVLAA+A TLTFMVGG E+AY AAK LF
Sbjct: 146 SRELSAVVSSRILKEKRGSWESPVMLDAPVSGGVLAADARTLTFMVGGLEEAYHAAKALF 205
Query: 208 LSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSA 267
LSMGK ++YCGG+GNG+AAKICNNL +AVSMLGVSEAL LGQSLGISA TLTK+ NSSSA
Sbjct: 206 LSMGKGSVYCGGSGNGSAAKICNNLALAVSMLGVSEALALGQSLGISAKTLTKVFNSSSA 265
Query: 268 RCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDI 327
RCWSS+SYNPVPGVME VP++R+Y GGFA+KLM KDLNLA ASA EVG+ PLTSQAQ+I
Sbjct: 266 RCWSSESYNPVPGVMEEVPSARDYDGGFATKLMFKDLNLAKASAGEVGLQHPLTSQAQEI 325
Query: 328 YAKLCENGHDSKDFSCVFQHYYGGKDEV 355
Y KLCE+G+++KDFSCVF+H+Y G DE+
Sbjct: 326 YKKLCEDGYENKDFSCVFRHFYSGDDEL 353
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|7431189|pir||T10635 3-hydroxyisobutyrate dehydrogenase homolog T13K14.90 - Arabidopsis thaliana gi|5262783|emb|CAB45888.1| 3-hydroxyisobutyrate dehydrogenase-like protein [Arabidopsis thaliana] gi|7268890|emb|CAB79093.1| 3-hydroxyisobutyrate dehydrogenase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust.
Identities = 252/377 (66%), Positives = 297/377 (78%), Gaps = 30/377 (7%)
Query: 3 MAICRVRVLPSLSNLKSTVLLSSPFQSSAMRRFFSSQVPSCQFESVGFIGLGNMGFRMAS 62
MAI R + L LS K+ F S ++ RF SS S QF++VGFIGLGNMGFRM +
Sbjct: 1 MAIRRAQTLLCLSKFKTN------FVSGSLHRFSSSSQNSNQFQNVGFIGLGNMGFRMVN 54
Query: 63 NLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122
NL++AGYK+ VHD+N +VMKMF++MGV ++ETP+EVA+ S+VVITMLPSSSHV+DVY G
Sbjct: 55 NLIRAGYKVTVHDINRDVMKMFTEMGVSSRETPYEVAQDSEVVITMLPSSSHVMDVYTGT 114
Query: 123 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKK------------------ 164
NGLL G N +RP L IDSSTIDPQT+R IS AVSNC LKEK+
Sbjct: 115 NGLLLGENDIRPALFIDSSTIDPQTTRKISLAVSNCNLKEKRASFCSSCEQVEIVSFSLV 174
Query: 165 ------DSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCG 218
D+WE PVMLDAPVSGGVLAAEAGTLTFMVGG EDAY AA+P+ SMG+ +IYCG
Sbjct: 175 SSIFDVDNWEKPVMLDAPVSGGVLAAEAGTLTFMVGGPEDAYLAARPILQSMGRTSIYCG 234
Query: 219 GAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPV 278
G+GNG+AAKICNNL MAVSMLG SEAL LGQSLGISASTLT++LN+SS RCWSSD+YNPV
Sbjct: 235 GSGNGSAAKICNNLAMAVSMLGTSEALALGQSLGISASTLTEVLNTSSGRCWSSDAYNPV 294
Query: 279 PGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDS 338
PGVM+GVP+SR+Y GGFASKLMAKDLNLA ASA+EVG PL S+AQ+IY K+CE GH++
Sbjct: 295 PGVMKGVPSSRDYNGGFASKLMAKDLNLAAASAEEVGHKSPLISKAQEIYKKMCEEGHET 354
Query: 339 KDFSCVFQHYYGGKDEV 355
KDFSCVF+H+Y GKDEV
Sbjct: 355 KDFSCVFRHFYNGKDEV 371
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356533081|ref|XP_003535097.1| PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust.
Identities = 237/331 (71%), Positives = 279/331 (84%)
Query: 24 SSPFQSSAMRRFFSSQVPSCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKM 83
+S SS++R F S+QVP +VGFIGLGNMG RMA+NL+KAG+++ VHD+N +V++M
Sbjct: 16 NSALVSSSIRAFSSAQVPPNHLRNVGFIGLGNMGSRMANNLIKAGFRLTVHDLNSDVLEM 75
Query: 84 FSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 143
FS MGVPTK+TP+EV+EASDVVITMLP+S+HV+DVY GPNGLL GG +RP LL+DSSTI
Sbjct: 76 FSQMGVPTKKTPYEVSEASDVVITMLPTSAHVIDVYTGPNGLLHGGKLLRPWLLLDSSTI 135
Query: 144 DPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAA 203
DPQTSRN+SA V+N IL+EKK WE P LDAPVSG V AAEAGTLTFMVGGSE+A+ AA
Sbjct: 136 DPQTSRNLSATVTNYILREKKGEWEKPFKLDAPVSGSVTAAEAGTLTFMVGGSEEAFLAA 195
Query: 204 KPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILN 263
KPL SMGK+ IYCGGAG+G+AAKICNNL +AVSMLG+SEAL LGQSLG+SASTLT I N
Sbjct: 196 KPLLFSMGKSAIYCGGAGSGSAAKICNNLALAVSMLGISEALALGQSLGVSASTLTNIFN 255
Query: 264 SSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQ 323
SSARCWSSD+YNPVPG+MEGVP+S +Y GGFASKLMAKDLNLA+ SAK G PLTSQ
Sbjct: 256 CSSARCWSSDAYNPVPGLMEGVPSSGDYNGGFASKLMAKDLNLAVESAKLAGCKYPLTSQ 315
Query: 324 AQDIYAKLCENGHDSKDFSCVFQHYYGGKDE 354
AQ IY +LC GH++KDFSC F+HYY G DE
Sbjct: 316 AQKIYTELCSVGHEAKDFSCAFRHYYSGIDE 346
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|363814571|ref|NP_001242761.1| uncharacterized protein LOC100814043 [Glycine max] gi|255639588|gb|ACU20088.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust.
Identities = 245/351 (69%), Positives = 289/351 (82%), Gaps = 6/351 (1%)
Query: 3 MAICRVRVLPSLSNLKSTVLLSSPFQSSAMRRFFSSQVPSCQFESVGFIGLGNMGFRMAS 62
MAICR++ L SLS S ++ SS++R F SS+VP ++VGFIGLGNMG RMA+
Sbjct: 1 MAICRLKSLLSLSKCNSALV------SSSIRTFSSSEVPPRHLQNVGFIGLGNMGSRMAN 54
Query: 63 NLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122
NL+KAG+++ VHD+N +V++MFS MGVPTK+TP+EV+EASDVVITMLP+S+HV+DVY GP
Sbjct: 55 NLIKAGFRLTVHDLNSDVLEMFSQMGVPTKKTPYEVSEASDVVITMLPNSAHVIDVYTGP 114
Query: 123 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVL 182
NGLL GG +RP LL+DSSTIDP+TSRN+SA VSN ILKEKK WE P LDAPVSG V
Sbjct: 115 NGLLHGGKLLRPWLLLDSSTIDPETSRNLSATVSNYILKEKKGDWEKPFKLDAPVSGSVT 174
Query: 183 AAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVS 242
AAEAGTLTFMVGG E+A+ AAKPL SMGK+ IYCGGAG+G+AAKICNNL +AVSMLG+S
Sbjct: 175 AAEAGTLTFMVGGLEEAFLAAKPLLFSMGKSAIYCGGAGSGSAAKICNNLALAVSMLGIS 234
Query: 243 EALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAK 302
EAL LGQSLG+SA TLT I N SSARCWSSD+YNPVPG+MEGVP+SR+Y GGFASKLMAK
Sbjct: 235 EALALGQSLGVSARTLTNIFNCSSARCWSSDAYNPVPGLMEGVPSSRDYNGGFASKLMAK 294
Query: 303 DLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGKD 353
DLNLA+ SAK G PLTSQAQ IY +LC GH++KDFSC F HYY G D
Sbjct: 295 DLNLAVESAKLAGCKYPLTSQAQKIYTELCSVGHEAKDFSCAFHHYYSGMD 345
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297799966|ref|XP_002867867.1| hypothetical protein ARALYDRAFT_329506 [Arabidopsis lyrata subsp. lyrata] gi|297313703|gb|EFH44126.1| hypothetical protein ARALYDRAFT_329506 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust.
Identities = 250/377 (66%), Positives = 294/377 (77%), Gaps = 29/377 (7%)
Query: 3 MAICRVRVLPSLSNLKSTVLLSSPFQSSAMRRFFSSQVPSCQFESVGFIGLGNMGFRMAS 62
MAI R + L LS K+ + S R F SS S QF++VGFIGLGNMG RM +
Sbjct: 1 MAIRRAQTLLCLSKFKTNFVFGS-----LHRLFSSSSQNSNQFQNVGFIGLGNMGSRMVN 55
Query: 63 NLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122
NL+KAGYK+ VHD+N +VMKMF++MGV +ETP++VA+ S+VVITMLPSSSHV+DVY G
Sbjct: 56 NLVKAGYKVTVHDINRDVMKMFTEMGVSARETPYQVAQDSEVVITMLPSSSHVMDVYTGT 115
Query: 123 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS---------------- 166
NGLL G N++RP LLIDSSTIDPQT+R IS AVSNC LKEK+ S
Sbjct: 116 NGLLLGENAIRPALLIDSSTIDPQTTRKISLAVSNCNLKEKRASFCSSCQQVEIIQFSIV 175
Query: 167 --------WENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCG 218
WE PVMLDAPVSGGVLAAEAGTLTFMVGG +DAY AA+P+ SMG+ +IYCG
Sbjct: 176 SSIIDAGNWEKPVMLDAPVSGGVLAAEAGTLTFMVGGPKDAYVAARPILQSMGRTSIYCG 235
Query: 219 GAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPV 278
G+GNG+AAKICNNL MAVSMLG SEAL LGQSLGISASTLT++LN+SS RCWSSD+YNPV
Sbjct: 236 GSGNGSAAKICNNLAMAVSMLGTSEALALGQSLGISASTLTEVLNTSSGRCWSSDAYNPV 295
Query: 279 PGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDS 338
PGVM+GVP+SR+Y GGFASKLMAKDLNLA ASA+EVG PL S+AQ+IY K+CE GH++
Sbjct: 296 PGVMKGVPSSRDYNGGFASKLMAKDLNLAAASAEEVGHKSPLISKAQEIYKKMCEEGHET 355
Query: 339 KDFSCVFQHYYGGKDEV 355
KDFSCVF+H+Y GKDEV
Sbjct: 356 KDFSCVFRHFYNGKDEV 372
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 355 | ||||||
| TAIR|locus:2133134 | 347 | AT4G20930 [Arabidopsis thalian | 0.977 | 1.0 | 0.713 | 2.3e-133 | |
| UNIPROTKB|Q5ZLI9 | 333 | HIBADH "Uncharacterized protei | 0.808 | 0.861 | 0.538 | 1.6e-77 | |
| MGI|MGI:1889802 | 335 | Hibadh "3-hydroxyisobutyrate d | 0.811 | 0.859 | 0.526 | 1.2e-74 | |
| UNIPROTKB|F1PYB6 | 336 | HIBADH "Uncharacterized protei | 0.808 | 0.854 | 0.525 | 1.5e-74 | |
| UNIPROTKB|Q2HJD7 | 336 | HIBADH "3-hydroxyisobutyrate d | 0.808 | 0.854 | 0.521 | 6.5e-74 | |
| UNIPROTKB|P31937 | 336 | HIBADH "3-hydroxyisobutyrate d | 0.808 | 0.854 | 0.521 | 8.4e-74 | |
| UNIPROTKB|Q5R5E7 | 336 | HIBADH "3-hydroxyisobutyrate d | 0.808 | 0.854 | 0.521 | 8.4e-74 | |
| RGD|708399 | 335 | Hibadh "3-hydroxyisobutyrate d | 0.811 | 0.859 | 0.516 | 2.2e-73 | |
| ZFIN|ZDB-GENE-040426-1582 | 329 | hibadhb "3-hydroxyisobutyrate | 0.808 | 0.872 | 0.511 | 1.1e-71 | |
| ZFIN|ZDB-GENE-040801-264 | 328 | hibadha "3-hydroxyisobutyrate | 0.808 | 0.875 | 0.508 | 1.8e-71 |
| TAIR|locus:2133134 AT4G20930 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1307 (465.1 bits), Expect = 2.3e-133, P = 2.3e-133
Identities = 252/353 (71%), Positives = 297/353 (84%)
Query: 3 MAICRVRVLPSLSNLKSTVLLSSPFQSSAMRRFFSSQVPSCQFESVGFIGLGNMGFRMAS 62
MAI R + L LS K+ F S ++ RF SS S QF++VGFIGLGNMGFRM +
Sbjct: 1 MAIRRAQTLLCLSKFKTN------FVSGSLHRFSSSSQNSNQFQNVGFIGLGNMGFRMVN 54
Query: 63 NLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122
NL++AGYK+ VHD+N +VMKMF++MGV ++ETP+EVA+ S+VVITMLPSSSHV+DVY G
Sbjct: 55 NLIRAGYKVTVHDINRDVMKMFTEMGVSSRETPYEVAQDSEVVITMLPSSSHVMDVYTGT 114
Query: 123 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVL 182
NGLL G N +RP L IDSSTIDPQT+R IS AVSNC LKEK+D+WE PVMLDAPVSGGVL
Sbjct: 115 NGLLLGENDIRPALFIDSSTIDPQTTRKISLAVSNCNLKEKRDNWEKPVMLDAPVSGGVL 174
Query: 183 AAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVS 242
AAEAGTLTFMVGG EDAY AA+P+ SMG+ +IYCGG+GNG+AAKICNNL MAVSMLG S
Sbjct: 175 AAEAGTLTFMVGGPEDAYLAARPILQSMGRTSIYCGGSGNGSAAKICNNLAMAVSMLGTS 234
Query: 243 EALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAK 302
EAL LGQSLGISASTLT++LN+SS RCWSSD+YNPVPGVM+GVP+SR+Y GGFASKLMAK
Sbjct: 235 EALALGQSLGISASTLTEVLNTSSGRCWSSDAYNPVPGVMKGVPSSRDYNGGFASKLMAK 294
Query: 303 DLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGKDEV 355
DLNLA ASA+EVG PL S+AQ+IY K+CE GH++KDFSCVF+H+Y GKDEV
Sbjct: 295 DLNLAAASAEEVGHKSPLISKAQEIYKKMCEEGHETKDFSCVFRHFYNGKDEV 347
|
|
| UNIPROTKB|Q5ZLI9 HIBADH "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 780 (279.6 bits), Expect = 1.6e-77, P = 1.6e-77
Identities = 161/299 (53%), Positives = 197/299 (65%)
Query: 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 107
VGFIGLGNMG MA NL+K GY + +DV K F D+G ++P +VAE +D +IT
Sbjct: 39 VGFIGLGNMGNPMAKNLIKHGYPVIAYDVFPEACKEFQDLGAQVTDSPADVAERADRIIT 98
Query: 108 MLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW 167
MLPSS + ++VY G NG+L+ + LLIDSSTIDP S+ ++ AV EK +
Sbjct: 99 MLPSSPNAIEVYTGANGILK--KVKKGSLLIDSSTIDPSVSKELAKAV------EKMGA- 149
Query: 168 ENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAK 227
V +DAPVSGGV AA AG LTFMVGG E + AAK L + MG N +YCG G G AAK
Sbjct: 150 ---VFMDAPVSGGVGAARAGNLTFMVGGMEQEFDAAKELLICMGSNVVYCGEVGTGQAAK 206
Query: 228 ICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPA 287
ICNN+ +A+SM+G +E + LG LG+ L KILN SS RCWSSD+YNPVPGVMEGVP+
Sbjct: 207 ICNNMLLAISMIGTAETMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMEGVPS 266
Query: 288 SRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 346
+ NY GGF + LMAKDL LA SA PL SQA IY +C G+ KDFS VFQ
Sbjct: 267 ANNYQGGFGTTLMAKDLGLAQISATNTKTPVPLGSQAHQIYRMMCAKGYALKDFSAVFQ 325
|
|
| MGI|MGI:1889802 Hibadh "3-hydroxyisobutyrate dehydrogenase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 753 (270.1 bits), Expect = 1.2e-74, P = 1.2e-74
Identities = 158/300 (52%), Positives = 196/300 (65%)
Query: 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 107
VGFIGLGNMG MA NLMK GY + ++DV +V K F + G +P EVAE +D +IT
Sbjct: 41 VGFIGLGNMGNPMAKNLMKHGYPLILYDVFPDVCKEFKEAGEQVASSPAEVAEKADRIIT 100
Query: 108 MLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW 167
MLPSS + ++VY+G NG+L+ + LLIDSSTIDP S+ ++ V EK +
Sbjct: 101 MLPSSMNAVEVYSGANGILK--KVKKGSLLIDSSTIDPSVSKELAKEV------EKMGA- 151
Query: 168 ENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAK 227
V +DAPVSGGV AA +G LTFMVGG ED + AA+ L MG N +YCG G G +AK
Sbjct: 152 ---VFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLECMGSNVVYCGAVGTGQSAK 208
Query: 228 ICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPA 287
ICNN+ +A+SM+G +EA+ LG G+ L KILN SS RCWSSD+YNPVPGVM GVP+
Sbjct: 209 ICNNMLLAISMIGTAEAMNLGIRSGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMHGVPS 268
Query: 288 SRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQH 347
S NY GGF + LMAKDL LA SA L S A IY +C G+ KDFS VFQ+
Sbjct: 269 SNNYQGGFGTTLMAKDLGLAQDSATSTKTPILLGSLAHQIYRMMCSKGYSKKDFSSVFQY 328
|
|
| UNIPROTKB|F1PYB6 HIBADH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 752 (269.8 bits), Expect = 1.5e-74, P = 1.5e-74
Identities = 157/299 (52%), Positives = 196/299 (65%)
Query: 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 107
VGFIGLGNMG MA NLMK GY + ++DV + K F D G +P +VAE +D +IT
Sbjct: 42 VGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIIT 101
Query: 108 MLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW 167
MLP+S + ++ Y+G NG+L+ + LLIDSSTIDP S+ ++ V EK +
Sbjct: 102 MLPTSINAIEAYSGANGILK--KVKKGSLLIDSSTIDPAVSKELAKEV------EKMGA- 152
Query: 168 ENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAK 227
V +DAPVSGGV AA +G LTFMVGG ED + AA+ L MG N +YCG G G AAK
Sbjct: 153 ---VFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAK 209
Query: 228 ICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPA 287
ICNN+ +A+SM+G +EA+ LG LG+ L KILN SS RCWSSD+YNPVPGVM+GVP+
Sbjct: 210 ICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPS 269
Query: 288 SRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 346
+ NY GGF + LMAKDL LA SA L SQA IY +C G+ KDFS VFQ
Sbjct: 270 ANNYQGGFGATLMAKDLGLAQDSATSTKSPILLGSQAHQIYRMMCAKGYSKKDFSSVFQ 328
|
|
| UNIPROTKB|Q2HJD7 HIBADH "3-hydroxyisobutyrate dehydrogenase, mitochondrial" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 746 (267.7 bits), Expect = 6.5e-74, P = 6.5e-74
Identities = 156/299 (52%), Positives = 196/299 (65%)
Query: 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 107
VGFIG+GNMG MA NLMK GY + ++DV + K F D G +P +VAE +D +IT
Sbjct: 42 VGFIGVGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFLDAGEQVVSSPADVAEKADRIIT 101
Query: 108 MLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW 167
MLP+S + ++ Y+G NG+L+ + LLIDSSTIDP S+ ++ V EK +
Sbjct: 102 MLPTSINAIEAYSGANGILK--KVKKGSLLIDSSTIDPMVSKELAKEV------EKMGA- 152
Query: 168 ENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAK 227
V +DAPVSGGV AA +G LTFMVGG E+ + AA+ L MG N +YCG G G AAK
Sbjct: 153 ---VFMDAPVSGGVGAARSGNLTFMVGGVEEEFAAAQELLGCMGSNVVYCGAVGTGQAAK 209
Query: 228 ICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPA 287
ICNNL +A+SM+G +EA+ LG LG+ L KILN SS RCWSSD+YNPVPGVM+GVP+
Sbjct: 210 ICNNLLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPS 269
Query: 288 SRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 346
+ NY GGF + LMAKDL LA SA L SQA IY +C G+ KDFS VFQ
Sbjct: 270 ANNYQGGFGTTLMAKDLGLAQDSATSTKSPILLGSQAHQIYRMMCAKGYSKKDFSSVFQ 328
|
|
| UNIPROTKB|P31937 HIBADH "3-hydroxyisobutyrate dehydrogenase, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 745 (267.3 bits), Expect = 8.4e-74, P = 8.4e-74
Identities = 156/299 (52%), Positives = 195/299 (65%)
Query: 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 107
VGFIGLGNMG MA NLMK GY + ++DV + K F D G +P +VAE +D +IT
Sbjct: 42 VGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIIT 101
Query: 108 MLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW 167
MLP+S + ++ Y+G NG+L+ + LLIDSSTIDP S+ ++ V EK +
Sbjct: 102 MLPTSINAIEAYSGANGILK--KVKKGSLLIDSSTIDPAVSKELAKEV------EKMGA- 152
Query: 168 ENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAK 227
V +DAPVSGGV AA +G LTFMVGG ED + AA+ L MG N +YCG G G AAK
Sbjct: 153 ---VFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAK 209
Query: 228 ICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPA 287
ICNN+ +A+SM+G +EA+ LG LG+ L KILN SS RCWSSD+YNPVPGVM+GVP+
Sbjct: 210 ICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPS 269
Query: 288 SRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 346
+ NY GGF + LMAKDL LA SA L S A IY +C G+ KDFS VFQ
Sbjct: 270 ANNYQGGFGTTLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQ 328
|
|
| UNIPROTKB|Q5R5E7 HIBADH "3-hydroxyisobutyrate dehydrogenase, mitochondrial" [Pongo abelii (taxid:9601)] | Back alignment and assigned GO terms |
|---|
Score = 745 (267.3 bits), Expect = 8.4e-74, P = 8.4e-74
Identities = 156/299 (52%), Positives = 195/299 (65%)
Query: 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 107
VGFIGLGNMG MA NLMK GY + ++DV + K F D G +P +VAE +D +IT
Sbjct: 42 VGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIIT 101
Query: 108 MLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW 167
MLP+S + ++ Y+G NG+L+ + LLIDSSTIDP S+ ++ V EK +
Sbjct: 102 MLPTSINAIEAYSGANGILK--KVKKGSLLIDSSTIDPAVSKELAKEV------EKMGA- 152
Query: 168 ENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAK 227
V +DAPVSGGV AA +G LTFMVGG ED + AA+ L MG N +YCG G G AAK
Sbjct: 153 ---VFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAK 209
Query: 228 ICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPA 287
ICNN+ +A+SM+G +EA+ LG LG+ L KILN SS RCWSSD+YNPVPGVM+GVP+
Sbjct: 210 ICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPS 269
Query: 288 SRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 346
+ NY GGF + LMAKDL LA SA L S A IY +C G+ KDFS VFQ
Sbjct: 270 ANNYQGGFGATLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQ 328
|
|
| RGD|708399 Hibadh "3-hydroxyisobutyrate dehydrogenase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 741 (265.9 bits), Expect = 2.2e-73, P = 2.2e-73
Identities = 155/300 (51%), Positives = 198/300 (66%)
Query: 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 107
VGFIGLGNMG MA NL+K GY + ++DV +V K F + G +P +VAE +D +IT
Sbjct: 41 VGFIGLGNMGNPMAKNLIKHGYPLILYDVFPDVCKEFKEAGEQVASSPADVAEKADRIIT 100
Query: 108 MLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW 167
MLPSS + ++VY+G NG+L+ + LLIDSSTIDP S+ ++ V EK +
Sbjct: 101 MLPSSMNSIEVYSGANGILK--KVKKGSLLIDSSTIDPSVSKELAKEV------EKMGA- 151
Query: 168 ENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAK 227
V +DAPVSGGV AA +G LTFMVGG E+ + AA+ L MG N +YCG G+G +AK
Sbjct: 152 ---VFMDAPVSGGVGAARSGNLTFMVGGVENEFAAAQELLGCMGSNVLYCGAVGSGQSAK 208
Query: 228 ICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPA 287
ICNN+ +A+SM+G +EA+ LG G+ L KILN SS RCWSSD+YNPVPGVM+GVP+
Sbjct: 209 ICNNMLLAISMIGTAEAMNLGIRSGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPS 268
Query: 288 SRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQH 347
S NY GGF + LMAKDL LA SA L S A IY +C G+ KDFS VFQ+
Sbjct: 269 SNNYQGGFGTTLMAKDLGLAQDSATSTKTPILLGSVAHQIYRMMCSKGYSKKDFSSVFQY 328
|
|
| ZFIN|ZDB-GENE-040426-1582 hibadhb "3-hydroxyisobutyrate dehydrogenase b" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
Identities = 153/299 (51%), Positives = 192/299 (64%)
Query: 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 107
VGFIGLGNMG MA NL+K GY + DV K ++G ++P +VA+ +D +IT
Sbjct: 35 VGFIGLGNMGNPMAKNLIKHGYPVIATDVFPESCKELQELGAQILDSPADVADKADRIIT 94
Query: 108 MLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW 167
MLPS+ +V+DVY GPNG+L+ + LLIDSSTIDP S+ ++ A EK +
Sbjct: 95 MLPSNPNVVDVYTGPNGILK--KVKKGSLLIDSSTIDPAVSKEMAVAA------EKLGA- 145
Query: 168 ENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAK 227
V + APVSGGV AA +G LTFMVGG E+ + AAK L MG N +YCG G G AAK
Sbjct: 146 ---VFMGAPVSGGVGAATSGKLTFMVGGPEEEFNAAKELLSCMGANVVYCGQVGTGQAAK 202
Query: 228 ICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPA 287
ICNN+ +A+ M+G +E + LG LG+ L KILN SS RCWSSD+YNPVPGVMEGVP+
Sbjct: 203 ICNNMLLAIGMIGTAETMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMEGVPS 262
Query: 288 SRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 346
+ NY GGF + LM KDL LA SA L S A IY +C G+ +KDFS VFQ
Sbjct: 263 ANNYQGGFGTTLMTKDLGLAQNSATNTKTPVLLGSVAHQIYRMMCGRGYANKDFSSVFQ 321
|
|
| ZFIN|ZDB-GENE-040801-264 hibadha "3-hydroxyisobutyrate dehydrogenase a" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 723 (259.6 bits), Expect = 1.8e-71, P = 1.8e-71
Identities = 152/299 (50%), Positives = 189/299 (63%)
Query: 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 107
VGFIGLGNMG MA NL+K GY + D K D G ++P EVAE +D +IT
Sbjct: 35 VGFIGLGNMGTPMARNLLKNGYPVIATDAFPESCKELQDSGAQILDSPAEVAEKADRIIT 94
Query: 108 MLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW 167
MLPSS +V++VY G N +L+ + LLIDSSTIDP S+ ++ A EK +
Sbjct: 95 MLPSSPNVIEVYTGSNSILR--KVKKGTLLIDSSTIDPAVSKEMAVAA------EKMGA- 145
Query: 168 ENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAK 227
V +DAPVSGGV AA LTF+VGG E+ Y AA+ L MG N +YCG G+G AAK
Sbjct: 146 ---VFMDAPVSGGVGAASLAKLTFLVGGVEEEYNAAQELLTCMGANVVYCGQVGSGQAAK 202
Query: 228 ICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPA 287
ICNN+ +A+ MLG +E + LG LG+ L KILN SS RCWSSD+YNPVPGVMEGVP+
Sbjct: 203 ICNNMLLAIGMLGTAETMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMEGVPS 262
Query: 288 SRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 346
+ NY GGF + LMAKDL A +A PL S A +Y +C G+ +KDFS VFQ
Sbjct: 263 ANNYQGGFITTLMAKDLGFAQNTATSTRTPIPLGSLAHQVYRTMCARGYSNKDFSSVFQ 321
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| P28811 | MMSB_PSEAE | 1, ., 1, ., 1, ., 3, 1 | 0.4025 | 0.8253 | 0.9832 | yes | no |
| Q9V8M5 | 3HIDH_DROME | 1, ., 1, ., 1, ., 3, 1 | 0.4352 | 0.8084 | 0.8858 | yes | no |
| Q5R5E7 | 3HIDH_PONAB | 1, ., 1, ., 1, ., 3, 1 | 0.5217 | 0.8084 | 0.8541 | yes | no |
| P63935 | MMSB_MYCTU | 1, ., 1, ., 1, ., 3, 1 | 0.3935 | 0.8112 | 0.9795 | yes | no |
| P63936 | MMSB_MYCBO | 1, ., 1, ., 1, ., 3, 1 | 0.3935 | 0.8112 | 0.9795 | yes | no |
| Q9SUC0 | 3HIDH_ARATH | 1, ., 1, ., 1, ., 3, 1 | 0.7138 | 0.9774 | 1.0 | yes | no |
| Q54CX6 | 3HIDH_DICDI | 1, ., 1, ., 1, ., 3, 1 | 0.4916 | 0.8084 | 0.8940 | yes | no |
| P29266 | 3HIDH_RAT | 1, ., 1, ., 1, ., 3, 1 | 0.5031 | 0.8338 | 0.8835 | yes | no |
| Q9XTI0 | 3HIDH_CAEEL | 1, ., 1, ., 1, ., 3, 1 | 0.4518 | 0.8028 | 0.9531 | yes | no |
| P31937 | 3HIDH_HUMAN | 1, ., 1, ., 1, ., 3, 1 | 0.5217 | 0.8084 | 0.8541 | yes | no |
| Q99L13 | 3HIDH_MOUSE | 1, ., 1, ., 1, ., 3, 1 | 0.5127 | 0.8338 | 0.8835 | yes | no |
| Q2HJD7 | 3HIDH_BOVIN | 1, ., 1, ., 1, ., 3, 1 | 0.5079 | 0.8309 | 0.8779 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 355 | |||
| TIGR01692 | 288 | TIGR01692, HIBADH, 3-hydroxyisobutyrate dehydrogen | 1e-113 | |
| COG2084 | 286 | COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase | 3e-94 | |
| PRK11559 | 296 | PRK11559, garR, tartronate semialdehyde reductase; | 7e-62 | |
| TIGR01505 | 291 | TIGR01505, tartro_sem_red, 2-hydroxy-3-oxopropiona | 5e-58 | |
| pfam03446 | 163 | pfam03446, NAD_binding_2, NAD binding domain of 6- | 9e-56 | |
| PRK15059 | 292 | PRK15059, PRK15059, tartronate semialdehyde reduct | 5e-41 | |
| PRK15461 | 296 | PRK15461, PRK15461, NADH-dependent gamma-hydroxybu | 2e-39 | |
| PLN02858 | 1378 | PLN02858, PLN02858, fructose-bisphosphate aldolase | 1e-31 | |
| PLN02858 | 1378 | PLN02858, PLN02858, fructose-bisphosphate aldolase | 2e-25 | |
| PRK09599 | 301 | PRK09599, PRK09599, 6-phosphogluconate dehydrogena | 3e-15 | |
| PRK12490 | 299 | PRK12490, PRK12490, 6-phosphogluconate dehydrogena | 4e-14 | |
| COG1023 | 300 | COG1023, Gnd, Predicted 6-phosphogluconate dehydro | 1e-13 | |
| TIGR00872 | 298 | TIGR00872, gnd_rel, 6-phosphogluconate dehydrogena | 4e-11 | |
| PLN02688 | 266 | PLN02688, PLN02688, pyrroline-5-carboxylate reduct | 0.003 | |
| COG0362 | 473 | COG0362, Gnd, 6-phosphogluconate dehydrogenase [Ca | 0.004 |
| >gnl|CDD|130753 TIGR01692, HIBADH, 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Score = 329 bits (846), Expect = e-113
Identities = 140/299 (46%), Positives = 186/299 (62%), Gaps = 12/299 (4%)
Query: 50 FIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITML 109
FIGLGNMG MA+NL+KAG+ + V D+ + ++ G +P E AE +D VITML
Sbjct: 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITML 60
Query: 110 PSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWEN 169
P+ HV+ VY+G G+L + LLID STIDP ++R ++ +
Sbjct: 61 PAGQHVISVYSGDEGILP--KVAKGSLLIDCSTIDPDSARKLAELAAA----------HG 108
Query: 170 PVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKIC 229
V +DAPVSGGV A AGTLTFMVGG + + AA+P+ MG+N ++CG G G AAKIC
Sbjct: 109 AVFMDAPVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLGPMGRNIVHCGDHGAGQAAKIC 168
Query: 230 NNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASR 289
NN+ + +SM+G +EA+ LG+ LG+ L +I N+SS RCWSSD+YNPVPGVM PAS
Sbjct: 169 NNMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSGRCWSSDTYNPVPGVMPQAPASN 228
Query: 290 NYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 348
Y GGF + LM KDL LA +AK G PL + A+ +Y+ + GH KDFS V Q
Sbjct: 229 GYQGGFGTALMLKDLGLAQDAAKSAGAPTPLGALARQLYSLFDDKGHGGKDFSSVIQLL 287
|
3-hydroxyisobutyrate dehydrogenase is an enzyme that catalyzes the NAD+-dependent oxidation of 3-hydroxyisobutyrate to methylmalonate semialdehyde of the valine catabolism pathway. In Pseudomonas aeruginosa, 3-hydroxyisobutyrate dehydrogenase (mmsB) is co-induced with methylmalonate-semialdehyde dehydrogenase (mmsA) when grown on medium containing valine as the sole carbon source. The positive transcriptional regulator of this operon (mmsR) is located upstream of these genes and has been identified as a member of the XylS/AraC family of transcriptional regulators. 3-hydroxyisobutyrate dehydrogenase shares high sequence homology to the characterized 3-hydroxyisobutyrate dehydrogenase from rat liver with conservation of proposed NAD+ binding residues at the N-terminus (G-8,10,13,24 and D-31). This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446) [Energy metabolism, Amino acids and amines]. Length = 288 |
| >gnl|CDD|224995 COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 282 bits (723), Expect = 3e-94
Identities = 119/304 (39%), Positives = 172/304 (56%), Gaps = 20/304 (6%)
Query: 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMF-SDMGVPTKETPFEVAEASDV 104
+ FIGLG MG MA+NL+KAG+++ V++ + G +P E A +DV
Sbjct: 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADV 60
Query: 105 VITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKK 164
VITMLP + V V G NGLL+G ++ID STI P+T+R ++AA L K
Sbjct: 61 VITMLPDDAAVRAVLFGENGLLEG--LKPGAIVIDMSTISPETARELAAA-----LAAKG 113
Query: 165 DSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGA 224
LDAPVSGGV A AGTLT MVGG +A++ AKP+ +MGKN ++ G G G
Sbjct: 114 LE-----FLDAPVSGGVPGAAAGTLTIMVGGDAEAFERAKPVLEAMGKNIVHVGPVGAGQ 168
Query: 225 AAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEG 284
AAK+ NN+ +A ++ ++EAL L + G+ + ++++ +A W ++Y P M
Sbjct: 169 AAKLANNILLAGNIAALAEALALAEKAGLDPDVVLEVISGGAAGSWILENYGP---RM-- 223
Query: 285 VPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCV 344
++ GFA LM KDL LAL +AKE+G PLT+ A ++YAK G +DFS +
Sbjct: 224 --LEGDFSPGFAVDLMLKDLGLALDAAKELGAPLPLTALAAELYAKAAAAGGGEEDFSAL 281
Query: 345 FQHY 348
+
Sbjct: 282 IKLL 285
|
Length = 286 |
| >gnl|CDD|183197 PRK11559, garR, tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Score = 199 bits (508), Expect = 7e-62
Identities = 110/302 (36%), Positives = 157/302 (51%), Gaps = 21/302 (6%)
Query: 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 107
VGFIGLG MG M+ NL+KAGY + V+D N + G T T VAE DV+IT
Sbjct: 5 VGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIIT 64
Query: 108 MLPSSSHVLDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 166
MLP+S HV +V G NG+++G +P ++ID S+I P SR I+AA LK K
Sbjct: 65 MLPNSPHVKEVALGENGIIEG---AKPGTVVIDMSSIAPLASREIAAA-----LKAK--- 113
Query: 167 WENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAA 226
MLDAPVSGG A GTL+ MVGG + + L +M + ++ G G G
Sbjct: 114 --GIEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGDIGAGNVT 171
Query: 227 KICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVP 286
K+ N + +A+++ +SEAL L G++ + + + A D+ P VM+
Sbjct: 172 KLANQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGGLAGSTVLDA--KAPMVMD--- 226
Query: 287 ASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 346
RN+ GF L KDL AL ++ VG PLT+ ++ L +G + D S +
Sbjct: 227 --RNFKPGFRIDLHIKDLANALDTSHGVGAPLPLTAAVMEMMQALKADGLGTADHSALAC 284
Query: 347 HY 348
+Y
Sbjct: 285 YY 286
|
Length = 296 |
| >gnl|CDD|130569 TIGR01505, tartro_sem_red, 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Score = 189 bits (481), Expect = 5e-58
Identities = 110/301 (36%), Positives = 155/301 (51%), Gaps = 19/301 (6%)
Query: 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 107
VGFIGLG MG M+ NL KAGY++ V + V G T ET +V E +DV+ T
Sbjct: 2 VGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFT 61
Query: 108 MLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW 167
M+P S V +V G NG+++ + + L+D S+I P S+ + AV KEK
Sbjct: 62 MVPDSPQVEEVAFGENGIIE--GAKPGKTLVDMSSISPIESKRFAKAV-----KEKGID- 113
Query: 168 ENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAK 227
LDAPVSGG + A GTL+ MVGG + + KPLF ++GKN + GG G+G K
Sbjct: 114 ----YLDAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKPLFEALGKNIVLVGGNGDGQTCK 169
Query: 228 ICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPA 287
+ N + +A+++ VSEAL G+ + + L A + V++
Sbjct: 170 VANQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLAGSTVLEVKGER--VID---- 223
Query: 288 SRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQH 347
R + GF L KDLNLAL SAK VG + P T+ Q+++ L NG D S + Q
Sbjct: 224 -RTFKPGFRIDLHQKDLNLALDSAKAVGANLPNTATVQELFNTLRANGGGQLDHSALVQA 282
Query: 348 Y 348
Sbjct: 283 L 283
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. Length = 291 |
| >gnl|CDD|217563 pfam03446, NAD_binding_2, NAD binding domain of 6-phosphogluconate dehydrogenase | Back alignment and domain information |
|---|
Score = 179 bits (456), Expect = 9e-56
Identities = 70/174 (40%), Positives = 97/174 (55%), Gaps = 14/174 (8%)
Query: 47 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVI 106
+GFIGLG MG MA NL+KAGY + V++ ++ G +P E ++DVVI
Sbjct: 2 KIGFIGLGVMGSPMALNLLKAGYTVTVYNRTPEKVEELVAEGAVGAASPAEFVASADVVI 61
Query: 107 TMLPSSSHVLDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEKKD 165
TM+P+ + V V G +GLL G ++P ++ID ST DP +R + L EK
Sbjct: 62 TMVPAGAAVDAVILGEDGLLPG---LKPGDIIIDGSTSDPDDTRRRAKE-----LAEK-- 111
Query: 166 SWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGG 219
LDAPVSGG AEAGTL+ MVGG E+A++ KP+ +MG + G
Sbjct: 112 ---GIHFLDAPVSGGEEGAEAGTLSIMVGGDEEAFERVKPILEAMGACVTHYIG 162
|
The NAD binding domain of 6-phosphogluconate dehydrogenase adopts a Rossmann fold. Length = 163 |
| >gnl|CDD|185019 PRK15059, PRK15059, tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Score = 145 bits (366), Expect = 5e-41
Identities = 100/299 (33%), Positives = 152/299 (50%), Gaps = 20/299 (6%)
Query: 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 107
+GFIGLG MG MA NL +AG+++ V + ++ S +G + ET +V EASD++
Sbjct: 3 LGFIGLGIMGTPMAINLARAGHQLHVTTIGPVADELLS-LGAVSVETARQVTEASDIIFI 61
Query: 108 MLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW 167
M+P + V +V G NG + S++ + ++D S+I P ++ + V+
Sbjct: 62 MVPDTPQVEEVLFGENGCTKA--SLKGKTIVDMSSISPIETKRFARQVNEL--------- 110
Query: 168 ENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAK 227
LDAPVSGG + A GTL+ MVGG E ++ KPLF +GKN GG G+G K
Sbjct: 111 -GGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLFELLGKNITLVGGNGDGQTCK 169
Query: 228 ICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPA 287
+ N + +A+++ VSEAL G + + L ++S V G
Sbjct: 170 VANQIIVALNIEAVSEALLFASKAGADPVRVRQALMGG----FASSRILEVHGERM---I 222
Query: 288 SRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 346
R + GF L KDLNLAL SAK + ++ P T+ Q+++ NG D S + Q
Sbjct: 223 KRTFNPGFKIALHQKDLNLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSALVQ 281
|
Length = 292 |
| >gnl|CDD|185358 PRK15461, PRK15461, NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 141 bits (356), Expect = 2e-39
Identities = 95/301 (31%), Positives = 154/301 (51%), Gaps = 20/301 (6%)
Query: 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 107
+ FIGLG MG MASNL+K G+++ V DVN + D G +P + A ++ VIT
Sbjct: 4 IAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVIT 63
Query: 108 MLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW 167
MLP+ V V G NG+ +G + R L+ID STI P + + A ++ K S
Sbjct: 64 MLPNGDLVRSVLFGENGVCEGLS--RDALVIDMSTIHPLQTDKLIAD-----MQAKGFS- 115
Query: 168 ENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAK 227
M+D PV A GTL + GG+ + + A P+ ++MG I GG G G K
Sbjct: 116 ----MMDVPVGRTSDNAITGTLLLLAGGTAEQVERATPILMAMGNELINAGGPGMGIRVK 171
Query: 228 ICNNLTMAVSMLGVS-EALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVP 286
+ NN M++++ +S EA L ++LG+S K+++ ++A + P V++G
Sbjct: 172 LINNY-MSIALNALSAEAAVLCEALGLSFDVALKVMSGTAAGKGHFTTTWP-NKVLKG-- 227
Query: 287 ASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 346
+ F L KDL +AL A ++ V PL + ++++Y++ G +D+S + +
Sbjct: 228 ---DLSPAFMIDLAHKDLGIALDVANQLHVPMPLGAASREVYSQARAAGRGRQDWSAILE 284
Query: 347 H 347
Sbjct: 285 Q 285
|
Length = 296 |
| >gnl|CDD|215463 PLN02858, PLN02858, fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Score = 126 bits (317), Expect = 1e-31
Identities = 81/288 (28%), Positives = 140/288 (48%), Gaps = 26/288 (9%)
Query: 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVV 105
+ +GFIGLG MGF MAS+L+K+ + + +DV + F + G +P EVA+ DV+
Sbjct: 325 KRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVL 384
Query: 106 ITMLPSSSHVLDVYNGPNG---LLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKE 162
+ M+ + +V G G L G S+ + SST+ P V L+
Sbjct: 385 VIMVANEVQAENVLFGDLGAVSALPAGASI-----VLSSTVSP-------GFVIQ--LER 430
Query: 163 K-KDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMG-KNTIYCGGA 220
+ ++ + ++DAPVSGGV A GTLT M G+++A ++A + ++ K + GG
Sbjct: 431 RLENEGRDIKLVDAPVSGGVKRAAMGTLTIMASGTDEALKSAGSVLSALSEKLYVIKGGC 490
Query: 221 GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPG 280
G G+ K+ N L V + +EA+ G LG++ L I++++ W + N VP
Sbjct: 491 GAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDIISNAGGTSWMFE--NRVPH 548
Query: 281 VMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIY 328
+++ +Y A + KDL + + L++ A ++
Sbjct: 549 MLDN-----DYTPYSALDIFVKDLGIVSREGSSRKIPLHLSTVAHQLF 591
|
Length = 1378 |
| >gnl|CDD|215463 PLN02858, PLN02858, fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 2e-25
Identities = 74/296 (25%), Positives = 140/296 (47%), Gaps = 24/296 (8%)
Query: 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 107
VGF+GL ++ F +AS+L+++G+K+ +++ +M+ F ++G ++P E A+ + ++
Sbjct: 7 VGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVV 66
Query: 108 MLPSSSHVLDVYNGPNGLLQG--GNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKD 165
+L V DV+ G G +G +V ++ STI P + + K+ +
Sbjct: 67 VLSHPDQVDDVFFGDEGAAKGLQKGAV----ILIRSTILPLQLQKLE--------KKLTE 114
Query: 166 SWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNT-IYCGGAGNGA 224
E ++DA VS G+ G L + G DA A+P +M + + G G G+
Sbjct: 115 RKEQIFLVDAYVSKGMSDLLNGKLMIIASGRSDAITRAQPFLSAMCQKLYTFEGEIGAGS 174
Query: 225 AAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEG 284
K+ N L + ++ +EA+ LG GI + I+++++ W N VP +++
Sbjct: 175 KVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDIISNAAGSSWI--FKNHVPLLLKD 232
Query: 285 VPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQA--QDIYAKLCENGHDS 338
+Y G ++ ++L + L AK + PL + A Q I G D+
Sbjct: 233 -----DYIEGRFLNVLVQNLGIVLDMAKSLPFPLPLLAVAHQQLISGSSSMQGDDT 283
|
Length = 1378 |
| >gnl|CDD|236582 PRK09599, PRK09599, 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Score = 75.2 bits (186), Expect = 3e-15
Identities = 47/200 (23%), Positives = 76/200 (38%), Gaps = 49/200 (24%)
Query: 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASD---V 104
+G IGLG MG MA L++ G+++ +D N ++ ++ G ++ E+ V
Sbjct: 3 LGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRV 62
Query: 105 VITMLPSSSHVLDVYNGPNGLLQ-------GGNS------VRPQLLIDSSTIDPQTSRNI 151
V M+P+ + LL GGNS R +LL + I
Sbjct: 63 VWLMVPAGEITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELL---------AEKGI 113
Query: 152 SAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLF--LS 209
+D SGGV E G M+GG ++A + +P+F L+
Sbjct: 114 H-------------------FVDVGTSGGVWGLERG-YCLMIGGDKEAVERLEPIFKALA 153
Query: 210 MGKNT--IYCGGAGNGAAAK 227
++ G G G K
Sbjct: 154 PRAEDGYLHAGPVGAGHFVK 173
|
Length = 301 |
| >gnl|CDD|237116 PRK12490, PRK12490, 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 4e-14
Identities = 49/190 (25%), Positives = 76/190 (40%), Gaps = 22/190 (11%)
Query: 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVN---CNVMKMFSDMGVPTKETPFEVAEASDV 104
+G IGLG MG MA L + G+++ +DVN +V + E EA
Sbjct: 3 LGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRT 62
Query: 105 VITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKK 164
+ M+P+ V LL G+ V +D SR L E+
Sbjct: 63 IWVMVPAGEVTESVIKDLYPLLSPGDIV----------VDGGNSRYKDDLRRAEELAERG 112
Query: 165 DSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSM---GKNTIYCGGAG 221
+ +D SGGV G MVGG ++ Y +P+F ++ G ++ G G
Sbjct: 113 IHY-----VDCGTSGGVWGLRNG-YCLMVGGDKEIYDRLEPVFKALAPEGPGYVHAGPVG 166
Query: 222 NGAAAKICNN 231
+G K+ +N
Sbjct: 167 SGHFLKMVHN 176
|
Length = 299 |
| >gnl|CDD|223954 COG1023, Gnd, Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 1e-13
Identities = 55/190 (28%), Positives = 86/190 (45%), Gaps = 22/190 (11%)
Query: 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAE---ASDV 104
+G IGLG MG + L+ G+ + +DVN ++ D G + E+ A +
Sbjct: 3 IGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRI 62
Query: 105 VITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKK 164
V M+P+ V + LL G+ V ID S + +L EK
Sbjct: 63 VWLMVPAGDITDAVIDDLAPLLSAGDIV----------IDGGNSNYKDSLRRAKLLAEKG 112
Query: 165 DSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLF--LSMGKNT-IYCGGAG 221
+ LD SGGV AE G M+GG E+A + +P+F L+ G++ +YCG +G
Sbjct: 113 IHF-----LDVGTSGGVWGAERG-YCLMIGGDEEAVERLEPIFKALAPGEDGYLYCGPSG 166
Query: 222 NGAAAKICNN 231
+G K+ +N
Sbjct: 167 SGHFVKMVHN 176
|
Length = 300 |
| >gnl|CDD|233163 TIGR00872, gnd_rel, 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 4e-11
Identities = 56/190 (29%), Positives = 77/190 (40%), Gaps = 23/190 (12%)
Query: 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVN---CNVMKMFSDMGVPTKETPFEVAEASDV 104
+G IGLG MG + L K G+ +D + MK GV + A V
Sbjct: 3 LGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRV 62
Query: 105 VITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKK 164
V M+P V V L+ G+ V ID S + +LKEK
Sbjct: 63 VWVMVPHGI-VDAVLEELAPTLEKGDIV----------IDGGNSYYKDSLRRYKLLKEKG 111
Query: 165 DSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMG---KNTIYCGGAG 221
LD SGGV E G FM+GG +A+ A+PLF + + +YCG G
Sbjct: 112 IHL-----LDCGTSGGVWGRERG-YCFMIGGDGEAFARAEPLFADVAPEEQGYLYCGPCG 165
Query: 222 NGAAAKICNN 231
+G K+ +N
Sbjct: 166 SGHFVKMVHN 175
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle [Energy metabolism, Pentose phosphate pathway]. Length = 298 |
| >gnl|CDD|178291 PLN02688, PLN02688, pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.003
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 47 SVGFIGLGNMGFRMASNLMKAGYKMAVH-----DVNCNVMKMFSDMGVPTKETPFEVAEA 101
VGFIG G M +A L+ +G D N +F +GV T + EV ++
Sbjct: 2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKS 61
Query: 102 SDVVI 106
SDV+I
Sbjct: 62 SDVII 66
|
Length = 266 |
| >gnl|CDD|223439 COG0362, Gnd, 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.004
Identities = 42/175 (24%), Positives = 67/175 (38%), Gaps = 32/175 (18%)
Query: 47 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMF-SDMGVPTKETPFE-----VA- 99
+G IGL MG +A N+ GY +AV++ F ++ P VA
Sbjct: 5 DIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVAS 64
Query: 100 -EASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSN 157
E ++ M+ + + V V LL+ G+ ++ID ++ T R
Sbjct: 65 LEKPRKILLMVKAGTPVDAVIEQLLPLLEKGD-----IIIDGGNSHYKDTIRRNKE---- 115
Query: 158 CILKEKKDSWENPVMLDAPVSGGVLAAEAGTLT---FMVGGSEDAYQAAKPLFLS 209
L EK + + VSGG E G M GG ++AY+ P+
Sbjct: 116 --LSEK-----GILFVGMGVSGG----EEGARHGPSIMPGGQKEAYELVAPILTK 159
|
Length = 473 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 355 | |||
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 100.0 | |
| KOG0409 | 327 | consensus Predicted dehydrogenase [General functio | 100.0 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 100.0 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 100.0 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 100.0 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 100.0 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 100.0 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 100.0 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 100.0 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 100.0 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 100.0 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 100.0 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 100.0 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 100.0 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 100.0 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 100.0 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 100.0 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 99.98 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 99.97 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 99.97 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 99.97 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.97 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 99.96 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 99.96 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.95 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 99.94 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.94 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 99.93 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 99.93 | |
| COG0362 | 473 | Gnd 6-phosphogluconate dehydrogenase [Carbohydrate | 99.92 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 99.92 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 99.9 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 99.9 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 99.89 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 99.88 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 99.87 | |
| KOG2653 | 487 | consensus 6-phosphogluconate dehydrogenase [Carboh | 99.87 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.86 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 99.85 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.85 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 99.84 | |
| PF14833 | 122 | NAD_binding_11: NAD-binding of NADP-dependent 3-hy | 99.83 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.82 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.82 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 99.82 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 99.81 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 99.81 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 99.8 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 99.8 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.8 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 99.8 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 99.8 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.8 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 99.8 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 99.79 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 99.79 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 99.78 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.78 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.77 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 99.77 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.77 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 99.76 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.76 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 99.74 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 99.73 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 99.72 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 99.71 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 99.71 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 99.68 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 99.68 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 99.67 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 99.66 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 99.66 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 99.65 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 99.63 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 99.63 | |
| PRK08269 | 314 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.63 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 99.62 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 99.6 | |
| PLN02256 | 304 | arogenate dehydrogenase | 99.6 | |
| KOG2666 | 481 | consensus UDP-glucose/GDP-mannose dehydrogenase [C | 99.6 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 99.57 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.57 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 99.57 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 99.56 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 99.55 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 99.54 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 99.52 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 99.5 | |
| TIGR00745 | 293 | apbA_panE 2-dehydropantoate 2-reductase. This mode | 99.49 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.47 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 99.47 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 99.47 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 99.44 | |
| KOG2304 | 298 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 99.39 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 99.38 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 99.37 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 99.36 | |
| TIGR00112 | 245 | proC pyrroline-5-carboxylate reductase. This enzym | 99.31 | |
| KOG3124 | 267 | consensus Pyrroline-5-carboxylate reductase [Amino | 99.25 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 99.2 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 99.17 | |
| KOG2380 | 480 | consensus Prephenate dehydrogenase (NADP+) [Amino | 99.16 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 99.15 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 99.12 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 99.11 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 99.1 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 99.09 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 99.08 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 99.03 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 99.02 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 99.0 | |
| KOG2305 | 313 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 98.98 | |
| KOG2711 | 372 | consensus Glycerol-3-phosphate dehydrogenase/dihyd | 98.98 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 98.94 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 98.91 | |
| PLN02928 | 347 | oxidoreductase family protein | 98.91 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 98.89 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 98.88 | |
| COG4007 | 340 | Predicted dehydrogenase related to H2-forming N5,N | 98.81 | |
| PF00984 | 96 | UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenas | 98.79 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 98.78 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 98.75 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 98.74 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.74 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 98.73 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 98.71 | |
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 98.71 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 98.71 | |
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 98.71 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 98.69 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 98.68 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 98.65 | |
| PRK06932 | 314 | glycerate dehydrogenase; Provisional | 98.63 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 98.62 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 98.6 | |
| KOG0069 | 336 | consensus Glyoxylate/hydroxypyruvate reductase (D- | 98.58 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 98.56 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.55 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 98.5 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 98.5 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 98.4 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 98.39 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 98.38 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 98.36 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 98.34 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.32 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 98.29 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 98.29 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 98.29 | |
| COG5495 | 289 | Uncharacterized conserved protein [Function unknow | 98.28 | |
| TIGR01921 | 324 | DAP-DH diaminopimelate dehydrogenase. This model r | 98.27 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 98.15 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 98.15 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 98.14 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 98.1 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 98.09 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 98.08 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 98.08 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 98.08 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 98.06 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 98.06 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 98.05 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 98.03 | |
| COG0059 | 338 | IlvC Ketol-acid reductoisomerase [Amino acid trans | 98.03 | |
| PLN02494 | 477 | adenosylhomocysteinase | 98.02 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 98.01 | |
| cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydr | 97.99 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 97.99 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 97.97 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 97.97 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 97.96 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 97.93 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 97.93 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 97.93 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 97.92 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 97.92 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 97.92 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 97.91 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 97.9 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 97.9 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 97.89 | |
| PF10100 | 429 | DUF2338: Uncharacterized protein conserved in bact | 97.87 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 97.87 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 97.87 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 97.86 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 97.84 | |
| PRK06407 | 301 | ornithine cyclodeaminase; Provisional | 97.83 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 97.81 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.81 | |
| PF02423 | 313 | OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst | 97.8 | |
| KOG0068 | 406 | consensus D-3-phosphoglycerate dehydrogenase, D-is | 97.75 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 97.74 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 97.74 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 97.74 | |
| COG0673 | 342 | MviM Predicted dehydrogenases and related proteins | 97.73 | |
| PRK07589 | 346 | ornithine cyclodeaminase; Validated | 97.71 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 97.69 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 97.69 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 97.67 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 97.67 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 97.67 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 97.65 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 97.64 | |
| COG2423 | 330 | Predicted ornithine cyclodeaminase, mu-crystallin | 97.62 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 97.6 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 97.58 | |
| PRK11579 | 346 | putative oxidoreductase; Provisional | 97.55 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 97.54 | |
| PRK06349 | 426 | homoserine dehydrogenase; Provisional | 97.53 | |
| TIGR01761 | 343 | thiaz-red thiazolinyl imide reductase. This reduct | 97.53 | |
| PRK15076 | 431 | alpha-galactosidase; Provisional | 97.53 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.53 | |
| PRK06199 | 379 | ornithine cyclodeaminase; Validated | 97.48 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 97.47 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 97.46 | |
| TIGR03215 | 285 | ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati | 97.46 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 97.43 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 97.41 | |
| PRK02318 | 381 | mannitol-1-phosphate 5-dehydrogenase; Provisional | 97.4 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 97.38 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 97.34 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 97.32 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 97.3 | |
| COG4408 | 431 | Uncharacterized protein conserved in bacteria [Fun | 97.29 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 97.26 | |
| PLN02602 | 350 | lactate dehydrogenase | 97.25 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.25 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 97.24 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 97.23 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 97.22 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 97.22 | |
| PRK00683 | 418 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.19 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 97.19 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 97.18 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 97.18 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 97.16 | |
| PF08546 | 125 | ApbA_C: Ketopantoate reductase PanE/ApbA C termina | 97.16 | |
| PRK06270 | 341 | homoserine dehydrogenase; Provisional | 97.12 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 97.11 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 97.11 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 97.1 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.09 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 97.09 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 97.03 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 97.02 | |
| PRK10206 | 344 | putative oxidoreductase; Provisional | 97.01 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 97.0 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.97 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.96 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 96.94 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 96.93 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 96.92 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 96.92 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 96.9 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 96.9 | |
| PRK00141 | 473 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.88 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 96.85 | |
| KOG2741 | 351 | consensus Dimeric dihydrodiol dehydrogenase [Carbo | 96.84 | |
| PRK08374 | 336 | homoserine dehydrogenase; Provisional | 96.83 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 96.81 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 96.8 | |
| PRK00421 | 461 | murC UDP-N-acetylmuramate--L-alanine ligase; Provi | 96.79 | |
| PRK01390 | 460 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.77 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.76 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.76 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 96.75 | |
| cd01076 | 227 | NAD_bind_1_Glu_DH NAD(P) binding domain of glutama | 96.74 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 96.74 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 96.74 | |
| PRK05472 | 213 | redox-sensing transcriptional repressor Rex; Provi | 96.73 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 96.72 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.72 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 96.71 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 96.71 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 96.71 | |
| TIGR01723 | 340 | hmd_TIGR 5,10-methenyltetrahydromethanopterin hydr | 96.7 | |
| PF00393 | 291 | 6PGD: 6-phosphogluconate dehydrogenase, C-terminal | 96.68 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 96.67 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 96.65 | |
| PF02629 | 96 | CoA_binding: CoA binding domain; InterPro: IPR0037 | 96.64 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 96.64 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 96.64 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 96.62 | |
| COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas | 96.62 | |
| PRK00961 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 96.61 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 96.6 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 96.6 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 96.56 | |
| COG0460 | 333 | ThrA Homoserine dehydrogenase [Amino acid transpor | 96.54 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 96.52 | |
| PLN00106 | 323 | malate dehydrogenase | 96.52 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 96.49 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 96.49 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.47 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 96.46 | |
| PRK14183 | 281 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.44 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.43 | |
| COG2344 | 211 | AT-rich DNA-binding protein [General function pred | 96.41 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 96.41 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 96.4 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 96.35 | |
| PRK14178 | 279 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.3 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 96.29 | |
| PF02056 | 183 | Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP | 96.26 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 96.26 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 96.21 | |
| PRK00676 | 338 | hemA glutamyl-tRNA reductase; Validated | 96.2 | |
| TIGR01082 | 448 | murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a | 96.2 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 96.19 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 96.16 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 96.16 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 96.15 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 96.14 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 96.11 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 96.09 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 96.09 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 96.09 | |
| KOG0399 | 2142 | consensus Glutamate synthase [Amino acid transport | 96.09 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 96.05 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 96.02 | |
| PRK02006 | 498 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.01 | |
| COG0026 | 375 | PurK Phosphoribosylaminoimidazole carboxylase (NCA | 96.01 | |
| cd05197 | 425 | GH4_glycoside_hydrolases Glycoside Hydrases Family | 95.99 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.98 | |
| TIGR01546 | 333 | GAPDH-II_archae glyceraldehyde-3-phosphate dehydro | 95.97 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 95.96 | |
| PRK14170 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.94 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 95.93 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 95.92 | |
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 95.92 | |
| PRK03803 | 448 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.91 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 95.9 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 95.88 | |
| COG0190 | 283 | FolD 5,10-methylene-tetrahydrofolate dehydrogenase | 95.87 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 95.85 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 95.85 | |
| PF03447 | 117 | NAD_binding_3: Homoserine dehydrogenase, NAD bindi | 95.85 | |
| PLN02516 | 299 | methylenetetrahydrofolate dehydrogenase (NADP+) | 95.84 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 95.83 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 95.8 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 95.8 | |
| COG4091 | 438 | Predicted homoserine dehydrogenase [Amino acid tra | 95.78 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 95.77 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 95.77 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 95.76 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 95.76 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 95.74 | |
| cd05298 | 437 | GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; | 95.72 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 95.71 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 95.69 | |
| TIGR01087 | 433 | murD UDP-N-acetylmuramoylalanine--D-glutamate liga | 95.68 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 95.68 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 95.68 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 95.67 | |
| cd05296 | 419 | GH4_P_beta_glucosidase Glycoside Hydrolases Family | 95.64 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 95.63 | |
| COG1090 | 297 | Predicted nucleoside-diphosphate sugar epimerase [ | 95.62 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 95.61 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 95.61 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 95.59 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 95.59 | |
| PRK08223 | 287 | hypothetical protein; Validated | 95.58 | |
| TIGR02717 | 447 | AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP | 95.57 | |
| PRK11861 | 673 | bifunctional prephenate dehydrogenase/3-phosphoshi | 95.57 | |
| PRK05868 | 372 | hypothetical protein; Validated | 95.56 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 95.55 | |
| PF03720 | 106 | UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen | 95.52 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 95.52 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.52 | |
| COG1486 | 442 | CelF Alpha-galactosidases/6-phospho-beta-glucosida | 95.51 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 95.51 | |
| PRK00711 | 416 | D-amino acid dehydrogenase small subunit; Validate | 95.48 | |
| PF13450 | 68 | NAD_binding_8: NAD(P)-binding Rossmann-like domain | 95.46 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 95.43 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 95.41 | |
| PRK02705 | 459 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.4 | |
| COG0493 | 457 | GltD NADPH-dependent glutamate synthase beta chain | 95.4 | |
| PRK14573 | 809 | bifunctional D-alanyl-alanine synthetase A/UDP-N-a | 95.38 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 95.36 | |
| PRK14173 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.35 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 95.33 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 95.29 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 95.27 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 95.25 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 95.24 | |
| PRK14177 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.21 | |
| PRK14172 | 278 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.2 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 95.16 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 95.16 | |
| PRK14186 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.16 | |
| PRK14169 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.15 | |
| PRK14166 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.12 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 95.11 | |
| PRK14180 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.1 | |
| PLN02897 | 345 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 95.09 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 95.08 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 95.07 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 95.06 | |
| PRK14193 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.05 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 95.04 | |
| PRK07538 | 413 | hypothetical protein; Provisional | 95.03 | |
| PLN00198 | 338 | anthocyanidin reductase; Provisional | 95.03 | |
| PRK06019 | 372 | phosphoribosylaminoimidazole carboxylase ATPase su | 95.02 | |
| PRK06392 | 326 | homoserine dehydrogenase; Provisional | 95.01 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 95.01 | |
| PRK03815 | 401 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.0 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 94.98 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 94.97 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 94.96 | |
| PRK14190 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.94 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 94.92 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 94.92 | |
| PRK14187 | 294 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.89 | |
| PRK07588 | 391 | hypothetical protein; Provisional | 94.88 | |
| PRK05678 | 291 | succinyl-CoA synthetase subunit alpha; Validated | 94.87 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 94.86 | |
| PRK07364 | 415 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 94.84 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 94.84 | |
| PLN02172 | 461 | flavin-containing monooxygenase FMO GS-OX | 94.83 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 94.82 | |
| PRK08773 | 392 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 94.81 | |
| PRK06847 | 375 | hypothetical protein; Provisional | 94.79 | |
| PRK04663 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.78 | |
| COG0654 | 387 | UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and | 94.78 | |
| TIGR03219 | 414 | salicylate_mono salicylate 1-monooxygenase. Member | 94.75 | |
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 94.75 | |
| PLN02477 | 410 | glutamate dehydrogenase | 94.74 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 94.73 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 94.73 | |
| PRK07411 | 390 | hypothetical protein; Validated | 94.71 | |
| PRK08849 | 384 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 94.7 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 94.7 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 94.68 | |
| COG0499 | 420 | SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me | 94.67 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 94.67 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 94.67 | |
| PRK01368 | 454 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.66 | |
| PRK14171 | 288 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.64 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 94.64 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 94.63 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 94.61 | |
| PRK14182 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.57 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 94.56 | |
| KOG1399 | 448 | consensus Flavin-containing monooxygenase [Seconda | 94.56 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 94.53 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 94.52 | |
| PRK05732 | 395 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 94.51 | |
| PRK03806 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.5 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 94.5 | |
| PRK08013 | 400 | oxidoreductase; Provisional | 94.5 | |
| cd01486 | 307 | Apg7 Apg7 is an E1-like protein, that activates tw | 94.49 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 94.49 | |
| PLN00093 | 450 | geranylgeranyl diphosphate reductase; Provisional | 94.49 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 94.48 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 94.44 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 94.43 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 94.41 | |
| TIGR01214 | 287 | rmlD dTDP-4-dehydrorhamnose reductase. This enzyme | 94.39 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 94.33 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 94.33 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 94.28 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 94.28 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 94.27 | |
| cd01488 | 291 | Uba3_RUB Ubiquitin activating enzyme (E1) subunit | 94.23 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 94.23 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 94.21 | |
| PRK07045 | 388 | putative monooxygenase; Reviewed | 94.21 | |
| PRK06475 | 400 | salicylate hydroxylase; Provisional | 94.2 | |
| PRK14181 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.18 | |
| PRK06617 | 374 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 94.18 | |
| PF01266 | 358 | DAO: FAD dependent oxidoreductase; InterPro: IPR00 | 94.18 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 94.17 | |
| PRK07494 | 388 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 94.15 | |
| KOG0022 | 375 | consensus Alcohol dehydrogenase, class III [Second | 94.15 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 94.15 | |
| TIGR02360 | 390 | pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. | 94.15 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 94.14 | |
| PTZ00383 | 497 | malate:quinone oxidoreductase; Provisional | 94.13 | |
| PRK14168 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.12 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 94.08 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 94.08 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 94.08 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 94.08 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 94.08 | |
| PLN02852 | 491 | ferredoxin-NADP+ reductase | 94.07 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 94.07 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 94.06 | |
| KOG1683 | 380 | consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA | 94.06 | |
| PLN02616 | 364 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 94.04 | |
| PRK12320 | 699 | hypothetical protein; Provisional | 94.02 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 94.02 | |
| COG0665 | 387 | DadA Glycine/D-amino acid oxidases (deaminating) [ | 94.0 | |
| PRK04690 | 468 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.99 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 93.98 | |
| PLN02948 | 577 | phosphoribosylaminoimidazole carboxylase | 93.97 | |
| PF00743 | 531 | FMO-like: Flavin-binding monooxygenase-like; Inter | 93.96 | |
| PRK09126 | 392 | hypothetical protein; Provisional | 93.95 | |
| PF04321 | 286 | RmlD_sub_bind: RmlD substrate binding domain; Inte | 93.95 | |
| PRK08132 | 547 | FAD-dependent oxidoreductase; Provisional | 93.94 |
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-56 Score=401.39 Aligned_cols=284 Identities=41% Similarity=0.659 Sum_probs=268.0
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhH-HHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCCc
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNV-MKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNG 124 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~-~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~~ 124 (355)
+||+|||+|.||.+||.+|.++||+|++|||++++ .+.+.+.|+..+.++.|+++.+|+||+|||++.++++|+++..+
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g 80 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG 80 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence 68999999999999999999999999999999999 66677789999999999999999999999999999999999888
Q ss_pred cccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecCCHHHHHHHH
Q 018506 125 LLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAK 204 (355)
Q Consensus 125 ~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg~~~~~~~v~ 204 (355)
++++. .+++++||+||++|..++++.+.+.+ . |.+|+|+|++|++..+..|++++|+||+++.+++++
T Consensus 81 ~~~~~--~~G~i~IDmSTisp~~a~~~a~~~~~------~----G~~~lDAPVsGg~~~A~~GtLtimvGG~~~~f~r~~ 148 (286)
T COG2084 81 LLEGL--KPGAIVIDMSTISPETARELAAALAA------K----GLEFLDAPVSGGVPGAAAGTLTIMVGGDAEAFERAK 148 (286)
T ss_pred hhhcC--CCCCEEEECCCCCHHHHHHHHHHHHh------c----CCcEEecCccCCchhhhhCceEEEeCCCHHHHHHHH
Confidence 88763 37889999999999999999999864 2 389999999999999999999999999999999999
Q ss_pred HHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcccccCCCCCCCcccC
Q 018506 205 PLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEG 284 (355)
Q Consensus 205 ~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 284 (355)
++|+.+|++++|+|+.|+++..|++||++...++++++|++.++++.|+|++.+.++++.+.+.||.++++.+
T Consensus 149 pvl~~~g~~i~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~~~~~~s~~~e~~~~------- 221 (286)
T COG2084 149 PVLEAMGKNIVHVGPVGAGQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLEVISGGAAGSWILENYGP------- 221 (286)
T ss_pred HHHHHhcCceEEECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccccCChHHHhhcc-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999998876642
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHHHHHHH
Q 018506 285 VPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 348 (355)
Q Consensus 285 ~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g~g~~d~~~~~~~~ 348 (355)
++.+++|.|+|.++++.||++++.+++++.|+++|+...+.++|+.+.+.|+|++||+++++.|
T Consensus 222 ~m~~~~~~p~F~v~~~~KDl~la~~~A~~~g~~lP~~~~~~~ly~~~~~~G~g~~D~sal~~~l 285 (286)
T COG2084 222 RMLEGDFSPGFAVDLMLKDLGLALDAAKELGAPLPLTALAAELYAKAAAAGGGEEDFSALIKLL 285 (286)
T ss_pred hhhcCCCCcchhHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCccChHHHHHHh
Confidence 3456799999999999999999999999999999999999999999999999999999999976
|
|
| >KOG0409 consensus Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-54 Score=379.91 Aligned_cols=293 Identities=49% Similarity=0.768 Sum_probs=272.5
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPN 123 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~ 123 (355)
+.++|||||+|+||++|+.+|.++||+|++|||+.++.+++++.|+.++.+|.|+++++|+||.+||++.++++++.+..
T Consensus 34 s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~~ 113 (327)
T KOG0409|consen 34 SKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGKS 113 (327)
T ss_pred ccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecCCHHHHHHH
Q 018506 124 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAA 203 (355)
Q Consensus 124 ~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg~~~~~~~v 203 (355)
++++... +.++..||+||+.|.++++|.+.+..+ +..|+|+|++|+...++.|+++||+|||++.++++
T Consensus 114 Gvl~g~~-~g~~~~vDmSTidp~~s~ei~~~i~~~----------~~~~vDAPVSGg~~~A~~G~LtimagGde~~~~~~ 182 (327)
T KOG0409|consen 114 GVLSGIR-PGKKATVDMSTIDPDTSLEIAKAISNK----------GGRFVDAPVSGGVKGAEEGTLTIMAGGDEALFEAA 182 (327)
T ss_pred cceeecc-CCCceEEeccccCHHHHHHHHHHHHhC----------CCeEEeccccCCchhhhcCeEEEEecCcHHHHHHH
Confidence 9998633 223344999999999999999988642 37899999999999999999999999999999999
Q ss_pred HHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcccccCCCCCCCccc
Q 018506 204 KPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVME 283 (355)
Q Consensus 204 ~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 283 (355)
.++|+.+|++++|+|..|.+.+.|+++|++.+..+..++|++.++.+.|+|..+++++++.+ ..|....+++.|++++
T Consensus 183 ~~~~~~mGk~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd~~~l~eiln~G--~~~S~~~~~~~p~m~k 260 (327)
T KOG0409|consen 183 SPVFKLMGKNVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLGLDAKKLLEILNTG--RCWSSMFYNPVPGMLK 260 (327)
T ss_pred HHHHHHhcceEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC--CcccHHHhCcCchhhc
Confidence 99999999999999999999999999999999999999999999999999999999999996 4455567788888875
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHHHHHHHhcCCCC
Q 018506 284 GVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGKDE 354 (355)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~~~~~ 354 (355)
++|.|+|.++.+.||++++.+.+++.++|+|+...+.++|+...+.|+|+.|++++|+++...++.
T Consensus 261 -----~dy~p~f~~~~m~KDLgla~~~a~~~~~~~P~~slA~qly~~~~a~G~g~~Dfs~V~~~~~~~~~~ 326 (327)
T KOG0409|consen 261 -----GDYNPGFALKLMVKDLGLALNAAESVKVPMPLGSLAHQLYKSMKALGYGDKDFSAVYRAFRRLNGI 326 (327)
T ss_pred -----CCCCCcchHHHHHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHhcCCCccccHHHHHHHHHhccC
Confidence 489999999999999999999999999999999999999999999999999999999988776654
|
|
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-49 Score=361.94 Aligned_cols=287 Identities=34% Similarity=0.516 Sum_probs=260.5
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCCcc
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGL 125 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~~~ 125 (355)
|||||||+|+||.+|+++|.++||+|++|||++. .+.+.+.|+..+.++.++++.+|+||+|+|++.++++++....++
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~ 79 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGC 79 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcch
Confidence 5899999999999999999999999999999875 577777888888899999999999999999998999999876666
Q ss_pred ccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecCCHHHHHHHHH
Q 018506 126 LQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKP 205 (355)
Q Consensus 126 l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg~~~~~~~v~~ 205 (355)
+.. ..++++|||+||+.|.+.+++.+.+.+ . +..|+++|++|++..+..|++.+|+||+++.++++++
T Consensus 80 ~~~--~~~g~ivvd~sT~~p~~~~~~~~~~~~------~----G~~~vdaPVsGg~~~a~~g~l~~~~gG~~~~~~~~~p 147 (292)
T PRK15059 80 TKA--SLKGKTIVDMSSISPIETKRFARQVNE------L----GGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKP 147 (292)
T ss_pred hcc--CCCCCEEEECCCCCHHHHHHHHHHHHH------c----CCCEEEecCCCCHHHHhcCcEEEEEcCCHHHHHHHHH
Confidence 654 236789999999999999999998864 2 3789999999999999999999999999999999999
Q ss_pred HHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcccccCCCCCCCcccCC
Q 018506 206 LFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGV 285 (355)
Q Consensus 206 ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 285 (355)
+|+.++++++|+|+.|+|..+|+++|++....+.+++|++.++++.|+|++++++++..+.+.+|....+.+ +
T Consensus 148 ~l~~~g~~~~~~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~-------~ 220 (292)
T PRK15059 148 LFELLGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQALMGGFASSRILEVHGE-------R 220 (292)
T ss_pred HHHHHcCCcEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCcccCHHHHhhch-------h
Confidence 999999999999999999999999999999999999999999999999999999999888877887654432 2
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHHHHHHHhcCC
Q 018506 286 PASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGK 352 (355)
Q Consensus 286 ~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~~~ 352 (355)
+.+++|.++|+++.+.||++++++++++.|+++|+.+.+.++|+.+.+.|+|++|++++++++.+..
T Consensus 221 ~~~~~~~~~f~l~~~~KDl~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~D~sa~~~~~~~~~ 287 (292)
T PRK15059 221 MIKRTFNPGFKIALHQKDLNLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSALVQALELMA 287 (292)
T ss_pred hhcCCCCCCCchHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCChHHHHHHHHHhc
Confidence 4467999999999999999999999999999999999999999999999999999999999776543
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-48 Score=355.67 Aligned_cols=288 Identities=31% Similarity=0.476 Sum_probs=259.9
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCCc
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNG 124 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~~ 124 (355)
|+||+|||+|+||.+|+.+|+++||+|++|||++++++.+.+.++..+.++.++++++|+||+|+|++.+++.++....+
T Consensus 1 m~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~ 80 (296)
T PRK15461 1 MAAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENG 80 (296)
T ss_pred CCeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCccc
Confidence 36899999999999999999999999999999999999999888888899999999999999999998889999887666
Q ss_pred cccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecCCHHHHHHHH
Q 018506 125 LLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAK 204 (355)
Q Consensus 125 ~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg~~~~~~~v~ 204 (355)
++.. ..+++++||+||+.|.+.+++.+.+.+. ++.|+|+|++|++..+..|++++|+||+++.+++++
T Consensus 81 i~~~--l~~g~lvid~sT~~p~~~~~l~~~l~~~----------g~~~ldapV~g~~~~a~~g~l~~~~gg~~~~~~~~~ 148 (296)
T PRK15461 81 VCEG--LSRDALVIDMSTIHPLQTDKLIADMQAK----------GFSMMDVPVGRTSDNAITGTLLLLAGGTAEQVERAT 148 (296)
T ss_pred Hhhc--CCCCCEEEECCCCCHHHHHHHHHHHHHc----------CCcEEEccCCCCHHHHHhCcEEEEECCCHHHHHHHH
Confidence 6654 2367899999999999999999888641 378999999999999999999999999999999999
Q ss_pred HHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcccccCCCCCCCcccC
Q 018506 205 PLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEG 284 (355)
Q Consensus 205 ~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 284 (355)
++|+.+|.+++++|+.|+|..+|+++|++...++++++|++.++++.|+|++.+++++..+...++..... .+ .
T Consensus 149 p~l~~~g~~~~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l~~~~~~~~~~~~~--~~----~ 222 (296)
T PRK15461 149 PILMAMGNELINAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFDVALKVMSGTAAGKGHFTTT--WP----N 222 (296)
T ss_pred HHHHHHcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccChHHHcc--cc----c
Confidence 99999999999999999999999999999999999999999999999999999999999876555433221 11 1
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHHHHHHHhc
Q 018506 285 VPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 350 (355)
Q Consensus 285 ~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~ 350 (355)
++..++|.++|+++.+.||++++.+++++.|+++|+.+.+.++|+.+.++|+|++||+++++++.+
T Consensus 223 ~~~~~~~~~~f~~~~~~KD~~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 288 (296)
T PRK15461 223 KVLKGDLSPAFMIDLAHKDLGIALDVANQLHVPMPLGAASREVYSQARAAGRGRQDWSAILEQVRV 288 (296)
T ss_pred hhccCCCCCCcchHHHHhhHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCCCChHHHHHHHHH
Confidence 234678999999999999999999999999999999999999999999999999999999998755
|
|
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-47 Score=350.11 Aligned_cols=287 Identities=49% Similarity=0.823 Sum_probs=261.2
Q ss_pred EEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCCccccCC
Q 018506 50 FIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGG 129 (355)
Q Consensus 50 iIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~~~l~~~ 129 (355)
|||+|.||.+|+++|.++||+|++|||++++++.+.+.|+..++++.++++++|+||+|+|+++++++++....++...
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~- 79 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPK- 79 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhc-
Confidence 6899999999999999999999999999999999999888888899999999999999999988899998655455543
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecCCHHHHHHHHHHHHH
Q 018506 130 NSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLS 209 (355)
Q Consensus 130 ~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg~~~~~~~v~~ll~~ 209 (355)
..+++++||+||+.|.+.+++.+.+.+ . +.+|+|+|++|++..+..+++++|+||+++.+++++++|+.
T Consensus 80 -~~~g~~vid~st~~p~~~~~~~~~~~~------~----g~~~vdaPv~Gg~~~a~~g~l~~~~gg~~~~~~~~~~~l~~ 148 (288)
T TIGR01692 80 -VAKGSLLIDCSTIDPDSARKLAELAAA------H----GAVFMDAPVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLGP 148 (288)
T ss_pred -CCCCCEEEECCCCCHHHHHHHHHHHHH------c----CCcEEECCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHH
Confidence 236789999999999999999988764 2 37899999999999999999999999999999999999999
Q ss_pred cCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcccccCCCCCCCcccCCCCCC
Q 018506 210 MGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASR 289 (355)
Q Consensus 210 ~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 289 (355)
+|++++++|+.|+++.+|+++|++.+..+.+++|++.++++.|+|++.+.+++..+.+.+|....+.+.++++...+.++
T Consensus 149 ~g~~~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 228 (288)
T TIGR01692 149 MGRNIVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSGRCWSSDTYNPVPGVMPQAPASN 228 (288)
T ss_pred hcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCcHHHHhCCCccccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999888887665555555544445678
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHHHHHHH
Q 018506 290 NYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 348 (355)
Q Consensus 290 ~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g~g~~d~~~~~~~~ 348 (355)
+|.++|++..+.||++++.+++++.|+++|+.+.+.++|+.+.++|+|++|++++++++
T Consensus 229 ~~~~~f~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~ 287 (288)
T TIGR01692 229 GYQGGFGTALMLKDLGLAQDAAKSAGAPTPLGALARQLYSLFDDKGHGGKDFSSVIQLL 287 (288)
T ss_pred CCCCCcchHHHHhhHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCCCChHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999865
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-44 Score=332.06 Aligned_cols=285 Identities=38% Similarity=0.577 Sum_probs=256.5
Q ss_pred eEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCCccc
Q 018506 47 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLL 126 (355)
Q Consensus 47 kIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~~~l 126 (355)
||||||+|.||.+|+.+|+++||+|++|||++++.+.+.+.|...++++.++++++|+||+|+|++.+++.++....+++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~ 80 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII 80 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence 69999999999999999999999999999999999999988888888999999999999999999888888876544444
Q ss_pred cCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecCCHHHHHHHHHH
Q 018506 127 QGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPL 206 (355)
Q Consensus 127 ~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg~~~~~~~v~~l 206 (355)
.. ..++++++|+||..|.+.+++.+.+.+ . +.+|+++|++|++..+..+++.+++||+++.++.++++
T Consensus 81 ~~--~~~g~iivd~st~~~~~~~~l~~~l~~------~----g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~l 148 (291)
T TIGR01505 81 EG--AKPGKTLVDMSSISPIESKRFAKAVKE------K----GIDYLDAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKPL 148 (291)
T ss_pred hc--CCCCCEEEECCCCCHHHHHHHHHHHHH------c----CCCEEecCCCCCHHHHhcCCEEEEecCCHHHHHHHHHH
Confidence 33 235689999999999998899888764 1 37899999999999999999999999999999999999
Q ss_pred HHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcccccCCCCCCCcccCCC
Q 018506 207 FLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVP 286 (355)
Q Consensus 207 l~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 286 (355)
|+.++.+++++|+.|.+..+|+++|.+....+.+++|++.++++.|+|++++.+++..+.+.+|......+ ++
T Consensus 149 l~~lg~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~~s~~~~~~~~-------~~ 221 (291)
T TIGR01505 149 FEALGKNIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLAGSTVLEVKGE-------RV 221 (291)
T ss_pred HHHhcCCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHHHhhCh-------hh
Confidence 99999999999999999999999999999999999999999999999999999999988777775543321 23
Q ss_pred CCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHHHHHHHhc
Q 018506 287 ASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 350 (355)
Q Consensus 287 ~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~ 350 (355)
..++|.++|+++++.||++++.+++++.|+++|+.+++.++|+.+.+.|+|++|++++++++.+
T Consensus 222 ~~~~~~~~f~~~~~~KDl~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~ 285 (291)
T TIGR01505 222 IDRTFKPGFRIDLHQKDLNLALDSAKAVGANLPNTATVQELFNTLRANGGGQLDHSALVQALEL 285 (291)
T ss_pred hcCCCCCCcchHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Confidence 4568999999999999999999999999999999999999999999999999999999998765
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-44 Score=332.76 Aligned_cols=287 Identities=37% Similarity=0.522 Sum_probs=257.8
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCCc
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNG 124 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~~ 124 (355)
+|||+|||+|.||.+++..|++.|++|++|||++++.+.+.+.+...++++.++++++|+||+|+|++..++.++....+
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~ 81 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENG 81 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcch
Confidence 47899999999999999999999999999999999999998888888889999999999999999998888888765444
Q ss_pred cccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecCCHHHHHHHH
Q 018506 125 LLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAK 204 (355)
Q Consensus 125 ~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg~~~~~~~v~ 204 (355)
++.. ..++++|+|+||+.|.+.+++.+.+.+ . +.+|+++|++|++..+..+++.+++||+++.++.++
T Consensus 82 ~~~~--~~~g~iiid~st~~~~~~~~l~~~~~~------~----g~~~~d~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~ 149 (296)
T PRK11559 82 IIEG--AKPGTVVIDMSSIAPLASREIAAALKA------K----GIEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYY 149 (296)
T ss_pred Hhhc--CCCCcEEEECCCCCHHHHHHHHHHHHH------c----CCcEEEcCCCCCHHHHhhCcEEEEECCCHHHHHHHH
Confidence 4443 236789999999999999999888763 1 378999999999999999999999999999999999
Q ss_pred HHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcccccCCCCCCCcccC
Q 018506 205 PLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEG 284 (355)
Q Consensus 205 ~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 284 (355)
++|+.++.+++++|+.|+|+.+|+++|.+.+.++++++|++.++++.|++++++.+++..+.+.++......+ .
T Consensus 150 ~~l~~~~~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~~~~s~~~~~~~~--~---- 223 (296)
T PRK11559 150 DLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGGLAGSTVLDAKAP--M---- 223 (296)
T ss_pred HHHHHhcCCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHHHhhch--H----
Confidence 9999999999999999999999999999999999999999999999999999999999988777765543322 2
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHHHHHHHhc
Q 018506 285 VPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 350 (355)
Q Consensus 285 ~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~ 350 (355)
+..++|.++|+++.+.||++++++++++.|+++|+++.+.++|+.+.+.|+|++||+++++++.+
T Consensus 224 -~~~~d~~~~f~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~ 288 (296)
T PRK11559 224 -VMDRNFKPGFRIDLHIKDLANALDTSHGVGAPLPLTAAVMEMMQALKADGLGTADHSALACYYEK 288 (296)
T ss_pred -hhcCCCCCCcchHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCCcHHHHHHHHH
Confidence 23568889999999999999999999999999999999999999999999999999999998765
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-44 Score=385.76 Aligned_cols=290 Identities=23% Similarity=0.394 Sum_probs=265.5
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPN 123 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~ 123 (355)
+..||||||+|.||.+||.+|+++||+|++|||++++++.+.+.|+..++|+.|++++||+||+|+|++.++++++.+..
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~ 82 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDE 82 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchh
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999998777
Q ss_pred ccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecCCHHHHHHH
Q 018506 124 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAA 203 (355)
Q Consensus 124 ~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg~~~~~~~v 203 (355)
+++... .+++++||+||+.|.+.+++.+.+.+. +. ++.|+|+|++|++..+..|++++|+||+++.++++
T Consensus 83 g~~~~l--~~g~iivd~STi~p~~~~~la~~l~~~-----g~---~~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~ 152 (1378)
T PLN02858 83 GAAKGL--QKGAVILIRSTILPLQLQKLEKKLTER-----KE---QIFLVDAYVSKGMSDLLNGKLMIIASGRSDAITRA 152 (1378)
T ss_pred hHHhcC--CCcCEEEECCCCCHHHHHHHHHHHHhc-----CC---ceEEEEccCcCCHHHHhcCCeEEEEcCCHHHHHHH
Confidence 777653 367899999999999999999988641 10 16799999999999999999999999999999999
Q ss_pred HHHHHHcCCCeEEe-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcccccCCCCCCCcc
Q 018506 204 KPLFLSMGKNTIYC-GGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVM 282 (355)
Q Consensus 204 ~~ll~~~g~~~~~~-g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 282 (355)
+++|+.+|++++++ |+.|+|..+|+++|++.+.++++++|++.++++.|+|++.++++++.+.+.||....+. +.
T Consensus 153 ~p~l~~~g~~i~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~vl~~s~g~s~~~~~~~--~~-- 228 (1378)
T PLN02858 153 QPFLSAMCQKLYTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDIISNAAGSSWIFKNHV--PL-- 228 (1378)
T ss_pred HHHHHHhcCceEEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCHHHHhhh--hH--
Confidence 99999999998765 88999999999999999999999999999999999999999999999998888766442 22
Q ss_pred cCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHHHHHHHhc
Q 018506 283 EGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 350 (355)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~ 350 (355)
+..++|.++|.++.+.||+++++++|++.|+++|+.+.+.++|+.+.+.|+|+.||+++++.+.+
T Consensus 229 ---~~~~d~~~~F~l~l~~KDl~la~~~A~~~g~~lpl~~~a~~~~~~a~~~G~g~~D~sav~~~~~~ 293 (1378)
T PLN02858 229 ---LLKDDYIEGRFLNVLVQNLGIVLDMAKSLPFPLPLLAVAHQQLISGSSSMQGDDTATSLAKVWEK 293 (1378)
T ss_pred ---hhcCCCCCCchhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Confidence 34679999999999999999999999999999999999999999999999999999999997754
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-43 Score=372.76 Aligned_cols=294 Identities=27% Similarity=0.429 Sum_probs=265.2
Q ss_pred CCCCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHh
Q 018506 40 VPSCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVY 119 (355)
Q Consensus 40 ~~~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl 119 (355)
|.+..+++|||||+|+||.+||.+|+++||+|++|||++++++.+.+.|+..+.++.++++++|+||+|||+++++++++
T Consensus 319 ~~~~~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl 398 (1378)
T PLN02858 319 MQAKPVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVL 398 (1378)
T ss_pred ccccCCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHH
Confidence 33334588999999999999999999999999999999999999999888888899999999999999999999999999
Q ss_pred cCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecCCHHH
Q 018506 120 NGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDA 199 (355)
Q Consensus 120 ~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg~~~~ 199 (355)
....+++... .+++++||+||++|.+++++.+.+.+. .. +++|+|+|++|++..+..|++++|+||+++.
T Consensus 399 ~g~~g~~~~l--~~g~ivVd~STvsP~~~~~la~~l~~~----g~----g~~~lDAPVsGg~~~A~~G~L~imvgG~~~~ 468 (1378)
T PLN02858 399 FGDLGAVSAL--PAGASIVLSSTVSPGFVIQLERRLENE----GR----DIKLVDAPVSGGVKRAAMGTLTIMASGTDEA 468 (1378)
T ss_pred hchhhHHhcC--CCCCEEEECCCCCHHHHHHHHHHHHhh----CC----CcEEEEccCCCChhhhhcCCceEEEECCHHH
Confidence 7766666542 367899999999999999998887631 12 3899999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCeEEe-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcccccCCCCC
Q 018506 200 YQAAKPLFLSMGKNTIYC-GGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPV 278 (355)
Q Consensus 200 ~~~v~~ll~~~g~~~~~~-g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~ 278 (355)
+++++++|+.++.+++++ |+.|+|+.+|+++|++.+.++++++|++.++++.|+|++.++++++.+.+.+|....+.
T Consensus 469 ~~~~~plL~~lg~~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl~~s~g~s~~~~~~~-- 546 (1378)
T PLN02858 469 LKSAGSVLSALSEKLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDIISNAGGTSWMFENRV-- 546 (1378)
T ss_pred HHHHHHHHHHHhCcEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcccChhhhhcc--
Confidence 999999999999988874 67999999999999999999999999999999999999999999999988888765432
Q ss_pred CCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHHHHHHHhc
Q 018506 279 PGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 350 (355)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~ 350 (355)
+. +.+++|.++|+++.+.||++++++.+++.|+++|+.+.+.++|+.+.++|+|++|++++++++.+
T Consensus 547 ~~-----~l~~d~~~~f~l~l~~KDl~l~~~~a~~~g~~~pl~~~~~~~~~~a~~~G~g~~D~sav~~~~~~ 613 (1378)
T PLN02858 547 PH-----MLDNDYTPYSALDIFVKDLGIVSREGSSRKIPLHLSTVAHQLFLAGSASGWGRIDDAAVVKVYET 613 (1378)
T ss_pred ch-----hhcCCCCCCchhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Confidence 23 34578999999999999999999999999999999999999999999999999999999997754
|
|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=311.90 Aligned_cols=281 Identities=21% Similarity=0.323 Sum_probs=244.2
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhc---CCEEEEeCCCchHHHHHhcCC
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEA---SDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~---aDiVi~~v~~~~~~~~vl~~~ 122 (355)
|||||||+|+||.+|+.+|.++|++|++|||++++.+.+.+.|...+.+++++++. +|+||+|+|++.++++++..+
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~~i 80 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIKDL 80 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHHHH
Confidence 58999999999999999999999999999999999999988888888899998866 699999999988889988654
Q ss_pred CccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecCCHHHHHH
Q 018506 123 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQA 202 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg~~~~~~~ 202 (355)
.+.+ .+++++||+||+.|...+++.+.+.+ . +++|+|+|++|++..+..|+ ++|+||+++++++
T Consensus 81 ~~~l-----~~g~ivid~st~~~~~~~~~~~~~~~------~----g~~~vdapV~G~~~~a~~g~-~~~~gG~~~~~~~ 144 (299)
T PRK12490 81 YPLL-----SPGDIVVDGGNSRYKDDLRRAEELAE------R----GIHYVDCGTSGGVWGLRNGY-CLMVGGDKEIYDR 144 (299)
T ss_pred hccC-----CCCCEEEECCCCCchhHHHHHHHHHH------c----CCeEEeCCCCCCHHHHhcCC-eEEecCCHHHHHH
Confidence 3333 25679999999999999999888754 2 37899999999999999998 8999999999999
Q ss_pred HHHHHHHcCC---CeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHhcC-CCcccccCCC
Q 018506 203 AKPLFLSMGK---NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLG--ISASTLTKILNSSS-ARCWSSDSYN 276 (355)
Q Consensus 203 v~~ll~~~g~---~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~G--i~~~~~~~~~~~~~-~~s~~~~~~~ 276 (355)
++++|+.++. +++|+|++|.+..+|+++|++....+++++|++.++++.| +|++.++++++.++ +.+|..+...
T Consensus 145 ~~~~l~~~~~~~~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~~~~~~~~s~~l~~~~ 224 (299)
T PRK12490 145 LEPVFKALAPEGPGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLWRNGSVIRSWLLDLTV 224 (299)
T ss_pred HHHHHHHhcCcCCcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHcCCcHHHHHHHHHHH
Confidence 9999999997 7899999999999999999999999999999999999999 99999999999643 6666554322
Q ss_pred CCCCcccCCCCCCCCCCCcchhhHHHHH---HHHHHHHHHhCCCChHHHHHH-HHHHHHHHCCCCCCcHHHHHHHHhcCC
Q 018506 277 PVPGVMEGVPASRNYGGGFASKLMAKDL---NLALASAKEVGVDCPLTSQAQ-DIYAKLCENGHDSKDFSCVFQHYYGGK 352 (355)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~kd~---~~~~~~a~~~gv~~pi~~~~~-~~~~~~~~~g~g~~d~~~~~~~~~~~~ 352 (355)
+ .+ .++++ .+.++.+.||+ +++++.+++.|+|+|++..+. .++....++|.|..|.+++.++ |++|
T Consensus 225 ~--~~-----~~~~~--~~~l~~~~KD~~~~~l~~~~A~~~g~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~-f~~~ 294 (299)
T PRK12490 225 K--AL-----AEDPK--LAGIKGYVNDSGEGRWTVEEAIELAVAAPVIAASLFMRFASQEDDSFHMKVVSALRNQ-FGGH 294 (299)
T ss_pred H--HH-----hhCCC--hhhhhHHHHhcCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCccCChHHHHHHHHHHh-hCCC
Confidence 1 11 12222 35678999998 799999999999999999996 9999999999999999999984 4443
|
|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-41 Score=323.73 Aligned_cols=268 Identities=20% Similarity=0.267 Sum_probs=231.5
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC----CCC---CCCCHHHHhhc---CCEEEEeCCCc
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM----GVP---TKETPFEVAEA---SDVVITMLPSS 112 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~----g~~---~~~s~~e~~~~---aDiVi~~v~~~ 112 (355)
..+++|||||+|.||.+||++|+++||+|++|||++++++.+.+. |.. .+.++.|+++. +|+||+|||++
T Consensus 4 ~~~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~ 83 (493)
T PLN02350 4 AALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAG 83 (493)
T ss_pred CCCCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCc
Confidence 456789999999999999999999999999999999999998763 543 67899999876 99999999999
Q ss_pred hHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEE
Q 018506 113 SHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFM 192 (355)
Q Consensus 113 ~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~ 192 (355)
+++++|+.+ ++... .++.++||+||+.|..++++.+.+.+ . |++|+++|++|++..+..|+ ++|
T Consensus 84 ~aV~~Vi~g---l~~~l--~~G~iiID~sT~~~~~t~~~~~~l~~------~----Gi~fldapVSGG~~gA~~G~-~im 147 (493)
T PLN02350 84 APVDQTIKA---LSEYM--EPGDCIIDGGNEWYENTERRIKEAAE------K----GLLYLGMGVSGGEEGARNGP-SLM 147 (493)
T ss_pred HHHHHHHHH---HHhhc--CCCCEEEECCCCCHHHHHHHHHHHHH------c----CCeEEeCCCcCCHHHhcCCC-eEE
Confidence 999999854 33331 25789999999999999999888764 2 38999999999999999999 999
Q ss_pred ecCCHHHHHHHHHHHHHcCC------CeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHH---H
Q 018506 193 VGGSEDAYQAAKPLFLSMGK------NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS-LGISASTLTKI---L 262 (355)
Q Consensus 193 ~gg~~~~~~~v~~ll~~~g~------~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~-~Gi~~~~~~~~---~ 262 (355)
+||+++++++++++|+.++. +++|+|+.|+|+.+|+++|.+.+..+++++|++.++++ .|+|++++.++ +
T Consensus 148 ~GG~~~a~~~v~pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~~~l~~vf~~~ 227 (493)
T PLN02350 148 PGGSFEAYKNIEDILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNEELAEVFAEW 227 (493)
T ss_pred ecCCHHHHHHHHHHHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 99999999999999999995 49999999999999999999999999999999999998 59999999998 5
Q ss_pred HhcCCCcccccCCCCCCCcccCCCCCC-CCCCCcchhhHHHHHH------HHHHHHHHhCCCChH-HHHHHHHHHHHHH
Q 018506 263 NSSSARCWSSDSYNPVPGVMEGVPASR-NYGGGFASKLMAKDLN------LALASAKEVGVDCPL-TSQAQDIYAKLCE 333 (355)
Q Consensus 263 ~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~kd~~------~~~~~a~~~gv~~pi-~~~~~~~~~~~~~ 333 (355)
+.+.+.||..+...+. +... +|.++|.++.+.||++ +..+.+.++|+|+|+ .+++.+.+.+..+
T Consensus 228 ~~g~~~S~llei~~~~-------l~~~d~~~~~f~l~~i~Kd~~~kGTg~w~~~~A~~lgv~~p~i~~av~~r~~s~~k 299 (493)
T PLN02350 228 NKGELESFLIEITADI-------FSVKDDKGDGYLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDARYLSGLK 299 (493)
T ss_pred cCCCccchHHHHHHHH-------HhhcCCCCCCchHHHHHhhhcccchHHHHHHHHHHhCCCccHHHHHHHHHHHhccH
Confidence 5777777766543221 1223 4777899999999999 899999999999999 7777777766544
|
|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=293.53 Aligned_cols=280 Identities=21% Similarity=0.317 Sum_probs=237.4
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhc---CCEEEEeCCCchHHHHHhcCC
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEA---SDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~---aDiVi~~v~~~~~~~~vl~~~ 122 (355)
|||||||+|.||.+|+++|.++||+|++|||++++++.+.+.|+..+++++|+++. +|+||+++|++.++++++..+
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~~~l 80 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATIDEL 80 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHHHHH
Confidence 68999999999999999999999999999999999999988898888899998875 699999999987888887654
Q ss_pred CccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecCCHHHHHH
Q 018506 123 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQA 202 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg~~~~~~~ 202 (355)
.+.+ .+++++||+||+.|...+++.+.+.+ . ++.|+|+|++|++..+..|. ++|+||+++++++
T Consensus 81 ~~~l-----~~g~ivid~st~~~~~~~~~~~~~~~------~----g~~~~dapvsG~~~~a~~g~-~~~~gG~~~~~~~ 144 (301)
T PRK09599 81 APLL-----SPGDIVIDGGNSYYKDDIRRAELLAE------K----GIHFVDVGTSGGVWGLERGY-CLMIGGDKEAVER 144 (301)
T ss_pred HhhC-----CCCCEEEeCCCCChhHHHHHHHHHHH------c----CCEEEeCCCCcCHHHHhcCC-eEEecCCHHHHHH
Confidence 3333 24679999999999999888887754 2 37899999999999999996 8999999999999
Q ss_pred HHHHHHHcCC----CeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCHHHHHHHHHhcC-CCcccccCC
Q 018506 203 AKPLFLSMGK----NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS--LGISASTLTKILNSSS-ARCWSSDSY 275 (355)
Q Consensus 203 v~~ll~~~g~----~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~--~Gi~~~~~~~~~~~~~-~~s~~~~~~ 275 (355)
++++|+.++. +++|+|+.|+|..+|+++|.+.+..+.+++|++.++++ .|+|+++++++++.++ ..||.....
T Consensus 145 ~~~~l~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~~~~~~~~~~s~~l~~~ 224 (301)
T PRK09599 145 LEPIFKALAPRAEDGYLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEVWRRGSVIRSWLLDLT 224 (301)
T ss_pred HHHHHHHHcccccCCeEeECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCCcHHHHHHHHHH
Confidence 9999999998 89999999999999999999999999999999999999 9999999999999875 566655433
Q ss_pred CCCCCcccCCCCCCCCCCCcc-hhhHHHH---HHHHHHHHHHhCCCChHHHHHHH-HHHHHHHCCCCCCcHHHHHHHHhc
Q 018506 276 NPVPGVMEGVPASRNYGGGFA-SKLMAKD---LNLALASAKEVGVDCPLTSQAQD-IYAKLCENGHDSKDFSCVFQHYYG 350 (355)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~-~~~~~kd---~~~~~~~a~~~gv~~pi~~~~~~-~~~~~~~~g~g~~d~~~~~~~~~~ 350 (355)
.+ .+. ++ +.+. +....|| ++++++.+.+.|+++|.+.++.. .+....+.|.|+.|.+++.++ ++
T Consensus 225 ~~---~~~-----~~--~~~~~~~~~~kd~~~~~~~~~~A~~~~~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~-fg 293 (301)
T PRK09599 225 AD---ALA-----ED--PKLDEISGYVEDSGEGRWTVEEAIDLAVPAPVIAAALFMRFRSRQEDSFADKVVAALRNG-FG 293 (301)
T ss_pred HH---HHh-----cC--CCHHHHHHHHHhhCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHh-cC
Confidence 21 111 11 2232 3344555 58999999999999999999554 588888999999999999985 55
Q ss_pred CC
Q 018506 351 GK 352 (355)
Q Consensus 351 ~~ 352 (355)
++
T Consensus 294 ~h 295 (301)
T PRK09599 294 GH 295 (301)
T ss_pred CC
Confidence 44
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=268.17 Aligned_cols=256 Identities=23% Similarity=0.359 Sum_probs=215.5
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHh---hcCCEEEEeCCCchHHHHHhcCC
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVA---EASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~---~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
|||||||+|.||.+|+.+|.++||+|.+|||++++++.+.+.+...+.++.++. +.+|+||+|+|+. .++++++++
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~~~l 79 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVLEEL 79 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHHHHH
Confidence 689999999999999999999999999999999999999988877777877765 4589999999987 899998765
Q ss_pred CccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecCCHHHHHH
Q 018506 123 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQA 202 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg~~~~~~~ 202 (355)
.+.+. ++++|||++|+.|..+.++.+.+.+ . +++|+++|++|++..+..| +.+|+||++++++.
T Consensus 80 ~~~l~-----~g~ivid~st~~~~~t~~~~~~~~~------~----g~~~vda~vsGg~~~a~~G-~~~~~gG~~~~~~~ 143 (298)
T TIGR00872 80 APTLE-----KGDIVIDGGNSYYKDSLRRYKLLKE------K----GIHLLDCGTSGGVWGRERG-YCFMIGGDGEAFAR 143 (298)
T ss_pred HhhCC-----CCCEEEECCCCCcccHHHHHHHHHh------c----CCeEEecCCCCCHHHHhcC-CeeeeCCCHHHHHH
Confidence 44442 5679999999999888888777753 2 3799999999999999999 59999999999999
Q ss_pred HHHHHHHcCC---CeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHhcC-CCcccccCCC
Q 018506 203 AKPLFLSMGK---NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSL--GISASTLTKILNSSS-ARCWSSDSYN 276 (355)
Q Consensus 203 v~~ll~~~g~---~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~--Gi~~~~~~~~~~~~~-~~s~~~~~~~ 276 (355)
++++|+.++. .++|+|+.|+++.+|+++|.+....+.+++|++.++++. |+|++++.++++.++ ..+|..+...
T Consensus 144 ~~~~l~~~~~~~~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~~~g~~~~s~~l~~~~ 223 (298)
T TIGR00872 144 AEPLFADVAPEEQGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVWRRGSVIRSWLLDLTA 223 (298)
T ss_pred HHHHHHHhcCcCCCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHcCCchhHhHHHHHHH
Confidence 9999999986 589999999999999999999999999999999999998 569999999999886 4777655322
Q ss_pred CCCCcccCCCCCCCCCCCcchh-hHHHHHHHHHHHHHHhCCCChHHHHHH
Q 018506 277 PVPGVMEGVPASRNYGGGFASK-LMAKDLNLALASAKEVGVDCPLTSQAQ 325 (355)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~-~~~kd~~~~~~~a~~~gv~~pi~~~~~ 325 (355)
. .+. ..++.+.|... ...+|.+.++..+.+.|+|+|.+.+..
T Consensus 224 ~---~~~----~~~~~~~~~~~~~~~~~~r~~v~~a~~~g~p~P~~~~al 266 (298)
T TIGR00872 224 I---AFR----ESPDLAEFSGRVSDSGEGRWTVIAAIDLGVPAPVIATSL 266 (298)
T ss_pred H---HHh----cCCcHHHHHHHHHhhccHHHHHHHHHHhCCCHHHHHHHH
Confidence 1 111 12233334433 356778999999999999999999955
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=276.48 Aligned_cols=258 Identities=22% Similarity=0.305 Sum_probs=210.8
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC----C--CCCCCCHHHHhh---cCCEEEEeCCCchHH
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM----G--VPTKETPFEVAE---ASDVVITMLPSSSHV 115 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~----g--~~~~~s~~e~~~---~aDiVi~~v~~~~~~ 115 (355)
|++|||||+|.||++||.+|+++||+|++|||++++++.+.+. | +..+++++|+++ ++|+||+++++++.+
T Consensus 1 ~~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v 80 (470)
T PTZ00142 1 MSDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAV 80 (470)
T ss_pred CCEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHH
Confidence 4689999999999999999999999999999999999988763 4 346789999886 489999999999999
Q ss_pred HHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecC
Q 018506 116 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG 195 (355)
Q Consensus 116 ~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg 195 (355)
++++.++.+.+. ++++|||++|+.+..+.+..+.+.+ . |++|+++|++|++..+..|+ ++|+||
T Consensus 81 ~~vi~~l~~~L~-----~g~iIID~gn~~~~dt~~r~~~l~~------~----Gi~fldapVSGG~~gA~~G~-~lm~GG 144 (470)
T PTZ00142 81 DETIDNLLPLLE-----KGDIIIDGGNEWYLNTERRIKRCEE------K----GILYLGMGVSGGEEGARYGP-SLMPGG 144 (470)
T ss_pred HHHHHHHHhhCC-----CCCEEEECCCCCHHHHHHHHHHHHH------c----CCeEEcCCCCCCHHHHhcCC-EEEEeC
Confidence 999976555443 5679999999999998888877754 2 38999999999999999999 899999
Q ss_pred CHHHHHHHHHHHHHcCCC------eEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH---Hhc
Q 018506 196 SEDAYQAAKPLFLSMGKN------TIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQ-SLGISASTLTKIL---NSS 265 (355)
Q Consensus 196 ~~~~~~~v~~ll~~~g~~------~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~-~~Gi~~~~~~~~~---~~~ 265 (355)
+++++++++++|+.++.+ +.|+|+.|+|+.+||++|.+.+..+++++|++.+++ +.|++++++.+++ +.+
T Consensus 145 ~~~a~~~~~piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l~~v~~~w~~g 224 (470)
T PTZ00142 145 NKEAYDHVKDILEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEELSEVFNKWNEG 224 (470)
T ss_pred CHHHHHHHHHHHHHHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHcCC
Confidence 999999999999999987 799999999999999999999999999999999998 7999999999888 467
Q ss_pred CCCcccccCCCCCCCcccCCCCCCCCCC-CcchhhHH-----HHH-HHHHHHHHHhCCCChHHHHHH
Q 018506 266 SARCWSSDSYNPVPGVMEGVPASRNYGG-GFASKLMA-----KDL-NLALASAKEVGVDCPLTSQAQ 325 (355)
Q Consensus 266 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----kd~-~~~~~~a~~~gv~~pi~~~~~ 325 (355)
...||..+..... +.. .|-.. +.-++... |-. +..++.|-++|+|.|++..++
T Consensus 225 ~~~S~l~ei~~~~---~~~----~d~~~~~~~l~~i~d~~~~~gtg~wt~~~a~~~~v~~p~i~~a~ 284 (470)
T PTZ00142 225 ILNSYLIEITAKI---LAK----KDDLGEEHLVDKILDIAGSKGTGKWTVQEALERGIPVPTMAASV 284 (470)
T ss_pred CccCHHHHHHHHH---hhc----ccccCCCcchhhhcCcccCCchHHhHHHHHHHcCCCchHHHHHH
Confidence 7777765533211 110 00000 01111110 111 367889999999999887765
|
|
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-33 Score=269.04 Aligned_cols=256 Identities=21% Similarity=0.298 Sum_probs=206.6
Q ss_pred eEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC-----CCCCCCCHHHHhh---cCCEEEEeCCCchHHHHH
Q 018506 47 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-----GVPTKETPFEVAE---ASDVVITMLPSSSHVLDV 118 (355)
Q Consensus 47 kIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~-----g~~~~~s~~e~~~---~aDiVi~~v~~~~~~~~v 118 (355)
+|||||+|.||.+||++|+++||+|++|||++++++.+.+. ++..+.++.++++ .+|+||+|+|+++.++++
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~V 80 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAV 80 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHH
Confidence 49999999999999999999999999999999999998865 2456778888764 689999999998899999
Q ss_pred hcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecCCHH
Q 018506 119 YNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSED 198 (355)
Q Consensus 119 l~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg~~~ 198 (355)
+.++.+.+. ++++|||++|+.+..+.+..+.+.+ . +++|+++|++|++..+..|+ ++|+||+++
T Consensus 81 i~~l~~~L~-----~g~iIID~gns~~~~t~~~~~~l~~------~----gi~fvdapVsGG~~gA~~G~-~im~GG~~~ 144 (467)
T TIGR00873 81 INQLLPLLE-----KGDIIIDGGNSHYPDTERRYKELKA------K----GILFVGSGVSGGEEGARKGP-SIMPGGSAE 144 (467)
T ss_pred HHHHHhhCC-----CCCEEEECCCcCHHHHHHHHHHHHh------c----CCEEEcCCCCCCHHHHhcCC-cCCCCCCHH
Confidence 876544442 5679999999998888887776643 2 38999999999999999998 999999999
Q ss_pred HHHHHHHHHHHcCCC------eEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH---HhcCCC
Q 018506 199 AYQAAKPLFLSMGKN------TIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQ-SLGISASTLTKIL---NSSSAR 268 (355)
Q Consensus 199 ~~~~v~~ll~~~g~~------~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~-~~Gi~~~~~~~~~---~~~~~~ 268 (355)
++++++++|+.++.+ ++|+|+.|+|+.+||++|.+.+.++++++|++.+++ +.|++++++.+++ +.+...
T Consensus 145 a~~~~~p~L~~ia~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~~v~~~w~~~~~~ 224 (467)
T TIGR00873 145 AWPLVAPIFQKIAAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAEVFTEWNNGELD 224 (467)
T ss_pred HHHHHHHHHHHHhhhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCccc
Confidence 999999999999976 489999999999999999999999999999999985 7999999999999 577777
Q ss_pred cccccCCCCCCCcccCCCCCCCCCCCcchhhHH-----HH-HHHHHHHHHHhCCCChHHHHHH
Q 018506 269 CWSSDSYNPVPGVMEGVPASRNYGGGFASKLMA-----KD-LNLALASAKEVGVDCPLTSQAQ 325 (355)
Q Consensus 269 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----kd-~~~~~~~a~~~gv~~pi~~~~~ 325 (355)
||..+...+... + ++-....-++... |- =+..++.|-++|+|.|++....
T Consensus 225 S~l~~~~~~~~~--~-----~d~~~~~~l~~i~~~~~~~gtg~wt~~~a~~~~v~~p~i~~av 280 (467)
T TIGR00873 225 SYLIEITADILK--K-----KDEDGKPLVDKILDTAGQKGTGKWTAISALDLGVPVTLITESV 280 (467)
T ss_pred chHHHhHHHHHh--c-----cCCCCCccHHhhcCcccCccHHHHHHHHHHHcCCCchHHHHHH
Confidence 886654332211 1 0100000011000 11 1367889999999999887654
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-32 Score=262.53 Aligned_cols=256 Identities=18% Similarity=0.207 Sum_probs=203.0
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC-------------------C-CCCCCCHHHHhhcCCEE
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-------------------G-VPTKETPFEVAEASDVV 105 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~-------------------g-~~~~~s~~e~~~~aDiV 105 (355)
|||+|||+|.||.++|..|+++||+|++||+++++++.+++. | +..++++.++++++|+|
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv 80 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI 80 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence 689999999999999999999999999999999999887642 2 45567888888999999
Q ss_pred EEeCCCchH---------HHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCC
Q 018506 106 ITMLPSSSH---------VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAP 176 (355)
Q Consensus 106 i~~v~~~~~---------~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p 176 (355)
|+|+|++.. +.+++..+.+.+ .++++|+++||++|.+.+++.+.+.+. ..|. ..+.+.|
T Consensus 81 ii~vpt~~~~~~~~d~~~v~~~~~~i~~~l-----~~g~lvi~~STv~pgt~~~l~~~~~~~----~~g~---~~~~d~~ 148 (411)
T TIGR03026 81 IICVPTPLKEDGSPDLSYVESAAETIAKHL-----RKGATVVLESTVPPGTTEEVVKPILER----ASGL---KLGEDFY 148 (411)
T ss_pred EEEeCCCCCCCCCcChHHHHHHHHHHHHhc-----CCCCEEEEeCcCCCCchHHHHHHHHHh----hcCC---CCCCCce
Confidence 999998743 556554433332 256799999999999998887555321 1110 0123334
Q ss_pred CCCChHHHhcCce--------EEEecCCHHHHHHHHHHHHHcC-CCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018506 177 VSGGVLAAEAGTL--------TFMVGGSEDAYQAAKPLFLSMG-KNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTL 247 (355)
Q Consensus 177 v~g~~~~~~~g~~--------~~~~gg~~~~~~~v~~ll~~~g-~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l 247 (355)
+.++|..+..|.. .+++|++++..++++++|+.++ ..++++++++.|+..|+++|.+.+..+++++|+..+
T Consensus 149 v~~~Pe~~~~G~~~~~~~~~~~iv~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~l 228 (411)
T TIGR03026 149 LAYNPEFLREGNAVHDLLNPDRIVGGETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANELARI 228 (411)
T ss_pred EEECCCcCCCCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444443 7899999999999999999998 578899999999999999999999999999999999
Q ss_pred HHHcCCCHHHHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCC--cchhhHHHHHHHHHHHHHHhCCCChHHHHHH
Q 018506 248 GQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG--FASKLMAKDLNLALASAKEVGVDCPLTSQAQ 325 (355)
Q Consensus 248 a~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~ 325 (355)
|++.|+|++++.++++.+. ++....|.|| |+..++.||+.++++.+++.|+++|+++++.
T Consensus 229 a~~~GiD~~~v~~~~~~~~------------------~i~~~~~~pg~g~gg~c~~KD~~~l~~~a~~~g~~~~l~~~~~ 290 (411)
T TIGR03026 229 CEALGIDVYEVIEAAGTDP------------------RIGFNFLNPGPGVGGHCIPKDPLALIYKAKELGYNPELIEAAR 290 (411)
T ss_pred HHHhCCCHHHHHHHhCCCC------------------CCCCCcCCCCCCCCCCchhhhHHHHHHHHHhcCCCcHHHHHHH
Confidence 9999999999999987531 0112355665 5678899999999999999999999999988
Q ss_pred HHHHHH
Q 018506 326 DIYAKL 331 (355)
Q Consensus 326 ~~~~~~ 331 (355)
++.+.-
T Consensus 291 ~~N~~~ 296 (411)
T TIGR03026 291 EINDSQ 296 (411)
T ss_pred HHHHHh
Confidence 876644
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-32 Score=261.40 Aligned_cols=247 Identities=22% Similarity=0.282 Sum_probs=204.6
Q ss_pred HhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC-----CCCCCCCHHHHhhc---CCEEEEeCCCchHHHHHhcCCCcccc
Q 018506 56 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-----GVPTKETPFEVAEA---SDVVITMLPSSSHVLDVYNGPNGLLQ 127 (355)
Q Consensus 56 mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~-----g~~~~~s~~e~~~~---aDiVi~~v~~~~~~~~vl~~~~~~l~ 127 (355)
||.+||++|+++||+|.+|||++++++.+.+. ++..+.|++|+++. +|+||+|||++.++++|+.++.+.+.
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~~l~~~l~ 80 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIEQLLPLLE 80 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHHHHHhcCC
Confidence 89999999999999999999999999999873 47888999999875 89999999999999999965433332
Q ss_pred CCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecCCHHHHHHHHHHH
Q 018506 128 GGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLF 207 (355)
Q Consensus 128 ~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg~~~~~~~v~~ll 207 (355)
++.+|||++|+.|..+++..+.+.+ . |++|+++|++|++..+..|+ ++|+||+++++++++++|
T Consensus 81 -----~GdiiID~gn~~~~~t~~~~~~l~~------~----Gi~fvdapVSGG~~gA~~G~-siM~GG~~~a~~~~~piL 144 (459)
T PRK09287 81 -----KGDIIIDGGNSNYKDTIRREKELAE------K----GIHFIGMGVSGGEEGALHGP-SIMPGGQKEAYELVAPIL 144 (459)
T ss_pred -----CCCEEEECCCCCHHHHHHHHHHHHh------c----CCeEEecCCCCCHHHHhcCC-EEEEeCCHHHHHHHHHHH
Confidence 5679999999999999998888754 2 38999999999999999998 999999999999999999
Q ss_pred HHcCCCe-------EEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH---HhcCCCcccccCCC
Q 018506 208 LSMGKNT-------IYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQ-SLGISASTLTKIL---NSSSARCWSSDSYN 276 (355)
Q Consensus 208 ~~~g~~~-------~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~-~~Gi~~~~~~~~~---~~~~~~s~~~~~~~ 276 (355)
+.++.++ .|+|+.|+|+.+||++|.+.+..+++++|++.+++ +.|++++++.+++ +.+...||..+...
T Consensus 145 ~~ia~~~~~g~~c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~~~wn~g~~~S~l~ei~~ 224 (459)
T PRK09287 145 EKIAAKVEDGEPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVFAEWNKGELNSYLIEITA 224 (459)
T ss_pred HHHhhhhcCCCCceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCccChHHHhHh
Confidence 9999876 89999999999999999999999999999999999 5999999999998 57777787665433
Q ss_pred CCCCcccCCCCCCCCCCCcchhhHHHH------H-HHHHHHHHHhCCCChHHHHHH
Q 018506 277 PVPGVMEGVPASRNYGGGFASKLMAKD------L-NLALASAKEVGVDCPLTSQAQ 325 (355)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~kd------~-~~~~~~a~~~gv~~pi~~~~~ 325 (355)
+. +..+++..+..+-....| . ...++.|-++|+|.|++....
T Consensus 225 ~~-------l~~~d~~~~~~~~d~i~d~~~~~gtg~Wt~~~a~~~~v~~~~i~~Av 273 (459)
T PRK09287 225 DI-------LRQKDEETGKPLVDVILDKAGQKGTGKWTSQSALDLGVPLTLITEAV 273 (459)
T ss_pred HH-------HhcCCCCCCCcchHHhcCcccCCcHHHHHHHHHHHhCCChHHHHHHH
Confidence 21 123344222211111111 1 366889999999999877644
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.4e-32 Score=227.31 Aligned_cols=162 Identities=44% Similarity=0.704 Sum_probs=141.1
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCCc
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNG 124 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~~ 124 (355)
||||||||+|.||++||++|.++||+|++|||++++.+++.+.|+..++|+.|+++++|+||+|+|++.++++++++..
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~- 79 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGEN- 79 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTT-
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhH-
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999999855
Q ss_pred cccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecCCHHHHHHHH
Q 018506 125 LLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAK 204 (355)
Q Consensus 125 ~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg~~~~~~~v~ 204 (355)
+++. ..+++++||+||.+|.+.+++.+.+.+ . +++|+|+|++|++..+..|++++|+||+++++++++
T Consensus 80 i~~~--l~~g~iiid~sT~~p~~~~~~~~~~~~------~----g~~~vdapV~Gg~~~a~~g~l~~~~gG~~~~~~~~~ 147 (163)
T PF03446_consen 80 ILAG--LRPGKIIIDMSTISPETSRELAERLAA------K----GVRYVDAPVSGGPPGAEEGTLTIMVGGDEEAFERVR 147 (163)
T ss_dssp HGGG--S-TTEEEEE-SS--HHHHHHHHHHHHH------T----TEEEEEEEEESHHHHHHHTTEEEEEES-HHHHHHHH
T ss_pred Hhhc--cccceEEEecCCcchhhhhhhhhhhhh------c----cceeeeeeeecccccccccceEEEccCCHHHHHHHH
Confidence 5554 237899999999999999999998864 2 389999999999999999999999999999999999
Q ss_pred HHHHHcCCCeE-EeCC
Q 018506 205 PLFLSMGKNTI-YCGG 219 (355)
Q Consensus 205 ~ll~~~g~~~~-~~g~ 219 (355)
++|+.++.+++ ++|+
T Consensus 148 ~~l~~~~~~v~~~~G~ 163 (163)
T PF03446_consen 148 PLLEAMGKNVYHYVGP 163 (163)
T ss_dssp HHHHHHEEEEEEE-ES
T ss_pred HHHHHHhCCceeeeCc
Confidence 99999999988 4475
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=216.21 Aligned_cols=262 Identities=25% Similarity=0.395 Sum_probs=212.8
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHh---hcCCEEEEeCCCchHHHHHhcCC
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVA---EASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~---~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
|+||+||+|.||..|+.+|.+.||+|++||+|++.++++...+++.++|+.+.+ ....+|.++||..+.+.++++++
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~~l 80 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVIDDL 80 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHHHHH
Confidence 789999999999999999999999999999999999999999999999988876 46899999999988999999998
Q ss_pred CccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecCCHHHHHH
Q 018506 123 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQA 202 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg~~~~~~~ 202 (355)
.+.++ ++.+|||-.+.......+..+.+.+ . +++|+|+..+|+...+..|- .+|+|||+++++.
T Consensus 81 a~~L~-----~GDivIDGGNS~y~Ds~rr~~~l~~------k----gi~flD~GTSGG~~G~~~G~-~lMiGG~~~a~~~ 144 (300)
T COG1023 81 APLLS-----AGDIVIDGGNSNYKDSLRRAKLLAE------K----GIHFLDVGTSGGVWGAERGY-CLMIGGDEEAVER 144 (300)
T ss_pred HhhcC-----CCCEEEECCccchHHHHHHHHHHHh------c----CCeEEeccCCCCchhhhcCc-eEEecCcHHHHHH
Confidence 88886 4569999999988877777666653 2 49999999999999999998 8999999999999
Q ss_pred HHHHHHHcCC---CeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHhcC-CCcccccCCC
Q 018506 203 AKPLFLSMGK---NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLG--ISASTLTKILNSSS-ARCWSSDSYN 276 (355)
Q Consensus 203 v~~ll~~~g~---~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~G--i~~~~~~~~~~~~~-~~s~~~~~~~ 276 (355)
++++|+.+.. -+.|+|+.|+++.+||++|.+.+.++++++|.+.+.++.. +|.+++.++.+.++ -.||..+...
T Consensus 145 ~~pif~~lA~ge~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~vW~hGSVIrSWLldLt~ 224 (300)
T COG1023 145 LEPIFKALAPGEDGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEVWNHGSVIRSWLLDLTA 224 (300)
T ss_pred HHHHHHhhCcCcCccccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCcchHHHHHHHHHH
Confidence 9999999975 4679999999999999999999999999999999988765 67899999999987 4678654321
Q ss_pred CCCCcccCCCCCCCCCCCcchhhHHHHH---HHHHHHHHHhCCCChHHHHHHHHHHHHHHC
Q 018506 277 PVPGVMEGVPASRNYGGGFASKLMAKDL---NLALASAKEVGVDCPLTSQAQDIYAKLCEN 334 (355)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~kd~---~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~ 334 (355)
. .++..+.-.++.. ...|. ++.++.+-+.|+|.|++..+. +.+..++
T Consensus 225 ~---Af~~d~~L~q~~g------~v~dSGEGrWTv~~aldlgvpaPVia~al--~~Rf~S~ 274 (300)
T COG1023 225 E---AFKKDPDLDQISG------RVSDSGEGRWTVEEALDLGVPAPVIALAL--MMRFRSR 274 (300)
T ss_pred H---HHhhCCCHHHhcC------eeccCCCceeehHHHHhcCCCchHHHHHH--HHHHhcc
Confidence 1 0110000001100 00011 245888999999999987765 4444444
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7e-29 Score=238.77 Aligned_cols=263 Identities=16% Similarity=0.181 Sum_probs=200.9
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCC-CCHHHH---------------hhcCCEEE
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK-ETPFEV---------------AEASDVVI 106 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~-~s~~e~---------------~~~aDiVi 106 (355)
|.+|||+|||+|.||.++|.+|+++||+|++||+++++++.++....... ..+++. .+++|+||
T Consensus 1 m~~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvi 80 (415)
T PRK11064 1 MSFETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFL 80 (415)
T ss_pred CCccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEE
Confidence 34689999999999999999999999999999999999998764332221 122222 23799999
Q ss_pred EeCCCc---------hHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhh----hccCCCCCceEE
Q 018506 107 TMLPSS---------SHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILK----EKKDSWENPVML 173 (355)
Q Consensus 107 ~~v~~~---------~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~----~~~g~~~~~~~~ 173 (355)
+|+|++ ..+.+++..+.+.+ .++++||++||++|.+++++...+.+.... ..+|....+.+.
T Consensus 81 i~vptp~~~~~~~dl~~v~~~~~~i~~~l-----~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f~v~ 155 (415)
T PRK11064 81 IAVPTPFKGDHEPDLTYVEAAAKSIAPVL-----KKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADINIA 155 (415)
T ss_pred EEcCCCCCCCCCcChHHHHHHHHHHHHhC-----CCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCeEEE
Confidence 999987 56666665543333 256899999999999999998877542110 001111236788
Q ss_pred eCC--CCCChHHHhcCceEEEecC-CHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018506 174 DAP--VSGGVLAAEAGTLTFMVGG-SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS 250 (355)
Q Consensus 174 ~~p--v~g~~~~~~~g~~~~~~gg-~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~ 250 (355)
.+| +..+........+..++|| +++.+++++++|+.++..+++++++++|+..|+++|.+.+..+++++|+..+|++
T Consensus 156 ~~PE~~~~G~~~~~~~~~~~vvgG~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~lae~ 235 (415)
T PRK11064 156 YCPERVLPGQVMVELIKNDRVIGGMTPVCSARASELYKIFLEGECVVTNSRTAEMCKLTENSFRDVNIAFANELSLICAD 235 (415)
T ss_pred ECCCccCCCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899 5555555556666778888 9999999999999999888899999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 018506 251 LGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAK 330 (355)
Q Consensus 251 ~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~ 330 (355)
.|+|.+++.++++.... . ..+ .-++||+..|+.||..++.+ +.+.+++++++++++-+.
T Consensus 236 ~GiD~~~v~~~~~~~~r---i-~~l--------------~pG~G~GG~ClpkD~~~L~~---~~~~~~~l~~~a~~~N~~ 294 (415)
T PRK11064 236 QGINVWELIRLANRHPR---V-NIL--------------QPGPGVGGHCIAVDPWFIVA---QNPQQARLIRTAREVNDG 294 (415)
T ss_pred hCCCHHHHHHHhccCCC---c-ccC--------------CCCCCCCCccccccHHHHHH---hcCCccHHHHHHHHHHHH
Confidence 99999999999875321 1 111 11356788999999988754 556678888888766554
Q ss_pred H
Q 018506 331 L 331 (355)
Q Consensus 331 ~ 331 (355)
-
T Consensus 295 ~ 295 (415)
T PRK11064 295 K 295 (415)
T ss_pred h
Confidence 3
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.5e-29 Score=238.45 Aligned_cols=258 Identities=14% Similarity=0.165 Sum_probs=196.9
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCC----------------CCCCHHHHhhcCCEEEEe
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP----------------TKETPFEVAEASDVVITM 108 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~----------------~~~s~~e~~~~aDiVi~~ 108 (355)
.|||||||+|+||.++|.+|++ ||+|++||+++++++.+++ |.. .+++..++++++|++|+|
T Consensus 6 ~mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~-G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~ 83 (425)
T PRK15182 6 EVKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKN-GVDVNLETTEEELREARYLKFTSEIEKIKECNFYIIT 83 (425)
T ss_pred CCeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHC-cCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEE
Confidence 4899999999999999999888 6999999999999999983 322 344555678899999999
Q ss_pred CCCc------hHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCC--CCCceEEeCCC--C
Q 018506 109 LPSS------SHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS--WENPVMLDAPV--S 178 (355)
Q Consensus 109 v~~~------~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~--~~~~~~~~~pv--~ 178 (355)
||+| .+++.++....++.+.. .++++||+.||+.|.+++++.+...+. ..|. ...+....+|. .
T Consensus 84 Vptp~~~~~~~dl~~v~~a~~~i~~~l--~~g~lVI~~STv~pgtt~~~~~~~l~~----~~g~~~~~~~~~~~~PE~v~ 157 (425)
T PRK15182 84 VPTPINTYKQPDLTPLIKASETVGTVL--NRGDIVVYESTVYPGCTEEECVPILAR----MSGMTFNQDFYVGYSPERIN 157 (425)
T ss_pred cCCCCCCCCCcchHHHHHHHHHHHHhc--CCCCEEEEecCCCCcchHHHHHHHHHh----ccCCCcCCCeeEeeCCCcCC
Confidence 9998 34455555444444432 257899999999999998765444321 1111 11233444443 3
Q ss_pred CChHHHhcCc-eEEEecCCHHHHHHHHHHHHHcC-CCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Q 018506 179 GGVLAAEAGT-LTFMVGGSEDAYQAAKPLFLSMG-KNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISAS 256 (355)
Q Consensus 179 g~~~~~~~g~-~~~~~gg~~~~~~~v~~ll~~~g-~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~ 256 (355)
++........ ..++.|++++..+.++++++.+. ..+++++++++|+..|+++|.+.++.+++++|+..+|++.|+|.+
T Consensus 158 ~G~a~~~~~~~~riv~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~lae~~GiD~~ 237 (425)
T PRK15182 158 PGDKKHRLTNIKKITSGSTAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAIIFNRLNIDTE 237 (425)
T ss_pred CCcccccccCCCeEEECCCHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHH
Confidence 4433333333 34666778888899999999986 347889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCC-cchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 018506 257 TLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG-FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAK 330 (355)
Q Consensus 257 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~ 330 (355)
++.+++... |... .+.|| ++..|..||..+++..+++.|++++++++++++-+.
T Consensus 238 ~v~~a~~~~----~~~~----------------~~~pG~vGG~ClpkD~~~L~~~a~~~g~~~~l~~~a~~iN~~ 292 (425)
T PRK15182 238 AVLRAAGSK----WNFL----------------PFRPGLVGGHCIGVDPYYLTHKSQGIGYYPEIILAGRRLNDN 292 (425)
T ss_pred HHHHHhcCC----CCcc----------------cCCCCccccccccccHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 999996532 2111 23456 888999999999999999999999999998887654
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=238.40 Aligned_cols=285 Identities=16% Similarity=0.165 Sum_probs=217.0
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC--------C------CCCCCCHHHHhhcCCEEEEeCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM--------G------VPTKETPFEVAEASDVVITMLP 110 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~--------g------~~~~~s~~e~~~~aDiVi~~v~ 110 (355)
+|||+|||+|.||++|+..|+++||+|++|+|++++.+.+++. + +..++++.++++++|+||+|+|
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~ 83 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVP 83 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECc
Confidence 5899999999999999999999999999999999988888763 2 3356688888899999999999
Q ss_pred CchHHHHHhcCCCccccCCCCCCCeEEEEcCCC-CHHH--HHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcC
Q 018506 111 SSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI-DPQT--SRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAG 187 (355)
Q Consensus 111 ~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~-~~~~--~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g 187 (355)
+. ++++++..+ + ++.++++++++ .|.. .+.+.+.+.+. ... ++.++..|..........+
T Consensus 84 ~~-~~~~v~~~l----~-----~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~---~~~----~~~~~~gP~~a~~~~~~~~ 146 (328)
T PRK14618 84 SK-ALRETLAGL----P-----RALGYVSCAKGLAPDGGRLSELARVLEFL---TQA----RVAVLSGPNHAEEIARFLP 146 (328)
T ss_pred hH-HHHHHHHhc----C-----cCCEEEEEeeccccCCCccchHHHHHHHh---cCC----CeEEEECccHHHHHHcCCC
Confidence 86 678877432 1 34588888885 5443 45666665420 001 2456777765544444456
Q ss_pred ceEEEecCCHHHHHHHHHHHHHcCCCeE--------EeCC---------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018506 188 TLTFMVGGSEDAYQAAKPLFLSMGKNTI--------YCGG---------AGNGAAAKICNNLTMAVSMLGVSEALTLGQS 250 (355)
Q Consensus 188 ~~~~~~gg~~~~~~~v~~ll~~~g~~~~--------~~g~---------~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~ 250 (355)
++.++.|++++.++.++++|+..+.+++ +.+. .|.+..+|+.+|.....+.+++.|++.++++
T Consensus 147 ~~~~~~~~~~~~~~~v~~ll~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la~~ 226 (328)
T PRK14618 147 AATVVASPEPGLARRVQAAFSGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGVA 226 (328)
T ss_pred eEEEEEeCCHHHHHHHHHHhCCCcEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHH
Confidence 7788999999999999999999998776 2443 4888899999999999999999999999999
Q ss_pred cCCCHHHHHHHHHhc----CCCcccccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHH
Q 018506 251 LGISASTLTKILNSS----SARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQD 326 (355)
Q Consensus 251 ~Gi~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~ 326 (355)
.|++++++++++..+ ...++.+.++.....+.++... .++.++|.+..+.||++.+.+++++.++++|+++.+++
T Consensus 227 ~G~~~~~~~~~~~~gDl~~t~~s~~~rn~~~g~~~~~g~~~-~~~~~~~~~~~g~kd~~~~~~la~~~~~~~Pl~~~~~~ 305 (328)
T PRK14618 227 LGAEEATFYGLSGLGDLIATATSPHSRNRAAGEAIVRGVDR-EHLEAGGKVVEGLYTVKALDAWAKAHGHDLPIVEAVAR 305 (328)
T ss_pred hCCCccchhcCcchhheeeEeccCCCccHHHHHHHhCCCCH-HHHHHcCCEEecHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 999999999998764 3345544332111122221000 12556788899999999999999999999999999999
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHhcCCCC
Q 018506 327 IYAKLCENGHDSKDFSCVFQHYYGGKDE 354 (355)
Q Consensus 327 ~~~~~~~~g~g~~d~~~~~~~~~~~~~~ 354 (355)
++ +++.|..++++.++++..+
T Consensus 306 ~~-------~~~~~~~~~~~~~~~~~~~ 326 (328)
T PRK14618 306 VA-------RGGWDPLAGLRSLMGREAK 326 (328)
T ss_pred HH-------hCCCCHHHHHHHHhcCCCC
Confidence 98 4677888888887765443
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=227.01 Aligned_cols=248 Identities=17% Similarity=0.168 Sum_probs=188.8
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh----------------CCCCC--CCCHHHHhhcCCEEEE
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD----------------MGVPT--KETPFEVAEASDVVIT 107 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~----------------~g~~~--~~s~~e~~~~aDiVi~ 107 (355)
|||+|||+|.||.++|..|+. ||+|++||+++++++.+++ .+... +.+..++++++|+||+
T Consensus 1 mkI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii 79 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII 79 (388)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence 689999999999999988875 9999999999999998876 22333 3346778899999999
Q ss_pred eCCCc----------hHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCC
Q 018506 108 MLPSS----------SHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPV 177 (355)
Q Consensus 108 ~v~~~----------~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv 177 (355)
|+|++ ..+++++..+.. + .++++||+.||++|.+++++.+.+.+ ..+...|.
T Consensus 80 ~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~-----~~g~lVV~~STv~pgtt~~l~~~~~~------------~~v~~~PE 141 (388)
T PRK15057 80 ATPTDYDPKTNYFNTSSVESVIKDVVE-I-----NPYAVMVIKSTVPVGFTAAMHKKYRT------------ENIIFSPE 141 (388)
T ss_pred eCCCCCccCCCCcChHHHHHHHHHHHh-c-----CCCCEEEEeeecCCchHHHHHHHhhc------------CcEEECcc
Confidence 99988 567777655432 2 25679999999999999999887642 11223443
Q ss_pred C---CChHHHhcCceEEEecCCHHHHHHHHHHHHH--cCCCeE-EeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 018506 178 S---GGVLAAEAGTLTFMVGGSEDAYQAAKPLFLS--MGKNTI-YCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSL 251 (355)
Q Consensus 178 ~---g~~~~~~~g~~~~~~gg~~~~~~~v~~ll~~--~g~~~~-~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~ 251 (355)
+ |...........+++|++++..+++.++|.. ++..+. ++++.++|+..|+++|.+.+..+++++|+..+|++.
T Consensus 142 ~l~~G~a~~d~~~p~rvv~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~ 221 (388)
T PRK15057 142 FLREGKALYDNLHPSRIVIGERSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESL 221 (388)
T ss_pred cccCCcccccccCCCEEEEEcCcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 2222222233388999988888999999965 555444 689999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 018506 252 GISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAK 330 (355)
Q Consensus 252 Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~ 330 (355)
|+|.+++.++++.... ....+ + .-++||+..|..||..++...+ .++++++++++.++-+.
T Consensus 222 GiD~~eV~~a~~~d~r---i~~~~------l-------~pG~G~GG~ClpkD~~~L~~~~--~~~~~~l~~~~~~~N~~ 282 (388)
T PRK15057 222 GLNTRQIIEGVCLDPR---IGNHY------N-------NPSFGYGGYCLPKDTKQLLANY--QSVPNNLISAIVDANRT 282 (388)
T ss_pred CcCHHHHHHHhcCCCC---CCCcc------C-------CCCCCCCCcChhhhHHHHHHhc--cCCCcHHHHHHHHHHHH
Confidence 9999999999975421 10100 0 1135788899999999997666 56788899988776543
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=231.45 Aligned_cols=283 Identities=17% Similarity=0.194 Sum_probs=206.6
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC--------------CCCCCCCHHHHhhcCCEEEEeCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM--------------GVPTKETPFEVAEASDVVITMLP 110 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~--------------g~~~~~s~~e~~~~aDiVi~~v~ 110 (355)
||||+|||+|.||++++..|+++||+|++|+|++++++.+++. +...+.++.++++++|+||+|+|
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~ 80 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVP 80 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCC
Confidence 5899999999999999999999999999999999999888775 24456678888889999999999
Q ss_pred CchHHHHHhcCCCccccCCCCCCCeEEEEcC-CCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCce
Q 018506 111 SSSHVLDVYNGPNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTL 189 (355)
Q Consensus 111 ~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~s-t~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~ 189 (355)
+ .++++++..+.+.+. +++++++++ +..+.+.+.+.+.+.+. .+......++..|.............
T Consensus 81 ~-~~~~~v~~~l~~~~~-----~~~~vi~~~ngv~~~~~~~~~~~l~~~-----~~~~~~~~~~~~P~~~~~~~~g~~~~ 149 (325)
T PRK00094 81 S-QALREVLKQLKPLLP-----PDAPIVWATKGIEPGTGKLLSEVLEEE-----LPDLAPIAVLSGPSFAKEVARGLPTA 149 (325)
T ss_pred H-HHHHHHHHHHHhhcC-----CCCEEEEEeecccCCCCCcHHHHHHHH-----cCCCCceEEEECccHHHHHHcCCCcE
Confidence 7 488888876554442 456888887 55665555555555431 11001245677776544434444566
Q ss_pred EEEecCCHHHHHHHHHHHHHcCCCeEEeCCc-----------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 018506 190 TFMVGGSEDAYQAAKPLFLSMGKNTIYCGGA-----------------GNGAAAKICNNLTMAVSMLGVSEALTLGQSLG 252 (355)
Q Consensus 190 ~~~~gg~~~~~~~v~~ll~~~g~~~~~~g~~-----------------g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~G 252 (355)
.++.+++.+.+++++++|+..+.++++..+. |.+...|+.+|.+......+++|++.++++.|
T Consensus 150 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G 229 (325)
T PRK00094 150 VVIASTDEELAERVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRLGVALG 229 (325)
T ss_pred EEEEeCCHHHHHHHHHHhCCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhC
Confidence 6777789999999999999998776655442 66677899999999999999999999999999
Q ss_pred CCHHHHHHHHHhcC----CCcccccCCCCCCCcccCCCCCCCC-----CCCcchhhHHHHHHHHHHHHHHhCCCChHHHH
Q 018506 253 ISASTLTKILNSSS----ARCWSSDSYNPVPGVMEGVPASRNY-----GGGFASKLMAKDLNLALASAKEVGVDCPLTSQ 323 (355)
Q Consensus 253 i~~~~~~~~~~~~~----~~s~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~ 323 (355)
+|++++.++...+. ..++....+.+...+..+ ..+ ..+ ....+.||++.++++++++|+++|+.++
T Consensus 230 ~d~~~~~~~~~~~~~~~~~~s~~~~~~~~g~~~~~~----~~~~~~~~~~~-~~~~~~kd~~~~~~~a~~~~~~~P~~~~ 304 (325)
T PRK00094 230 ANPETFLGLAGLGDLVLTCTSPLSRNRRFGLALGQG----KSLEEALAEIG-MVAEGVRTAKAVYELAKKLGVEMPITEA 304 (325)
T ss_pred CChhhhhcccHhhhhhhhccCCCCccHHHHHHHHCC----CCHHHHHHHcC-CEeecHHHHHHHHHHHHHhCCCCCHHHH
Confidence 99999988765442 111111111100000000 001 112 4567899999999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCcHHHHHHHHhc
Q 018506 324 AQDIYAKLCENGHDSKDFSCVFQHYYG 350 (355)
Q Consensus 324 ~~~~~~~~~~~g~g~~d~~~~~~~~~~ 350 (355)
+++++ +++.+...+++.+++
T Consensus 305 ~~~~~-------~~~~~~~~~~~~~~~ 324 (325)
T PRK00094 305 VYAVL-------YEGKDPREAVEDLMG 324 (325)
T ss_pred HHHHH-------cCCCCHHHHHHHHhc
Confidence 99998 477788888877654
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.5e-28 Score=223.78 Aligned_cols=260 Identities=17% Similarity=0.212 Sum_probs=196.3
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPN 123 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~ 123 (355)
+.|||+|||+|+||++||..|.++||+|++|+|++. .++.++++++|+||+++|+. ++++++..+.
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-------------~~~~~~~~~advvi~~vp~~-~~~~v~~~l~ 68 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-------------LSLAAVLADADVIVSAVSMK-GVRPVAEQVQ 68 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-------------CCHHHHHhcCCEEEEECChH-HHHHHHHHHH
Confidence 458999999999999999999999999999999853 57888889999999999984 8888886653
Q ss_pred ccccCCCCCCCeEEEEcCC-CCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCC--CChH-----HHhcCceEEEecC
Q 018506 124 GLLQGGNSVRPQLLIDSST-IDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVS--GGVL-----AAEAGTLTFMVGG 195 (355)
Q Consensus 124 ~~l~~~~~~~~~ivi~~st-~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~--g~~~-----~~~~g~~~~~~gg 195 (355)
+.. ..++++++++++ ..|...+.+.+.+.. .+.++|+. +++. .....+..+++|+
T Consensus 69 ~~~----~~~~~ivi~~s~gi~~~~~~~~s~~~~~-------------~~~~~~v~~i~gp~~a~ei~~~~~~~~~~ag~ 131 (308)
T PRK14619 69 ALN----LPPETIIVTATKGLDPETTRTPSQIWQA-------------AFPNHPVVVLSGPNLSKEIQQGLPAATVVASR 131 (308)
T ss_pred Hhc----CCCCcEEEEeCCcccCCCCcCHHHHHHH-------------HcCCCceEEEECCCcHHHHhcCCCeEEEEEeC
Confidence 321 124578999887 556655555555432 22344442 2221 1223567888999
Q ss_pred CHHHHHHHHHHHHHcCCCeEEeCC-c----------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 018506 196 SEDAYQAAKPLFLSMGKNTIYCGG-A----------------GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTL 258 (355)
Q Consensus 196 ~~~~~~~v~~ll~~~g~~~~~~g~-~----------------g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~ 258 (355)
+.+.++.++++|+..+.++++.++ . |.+..+|+.+|...+.+..++.|++.++++.|++++++
T Consensus 132 ~~~~~~~v~~ll~~~~~~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~l~~~~G~~~~t~ 211 (308)
T PRK14619 132 DLAAAETVQQIFSSERFRVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVGTHLGAQTETF 211 (308)
T ss_pred CHHHHHHHHHHhCCCcEEEEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCCcccc
Confidence 999999999999999988886665 2 22344458889999999999999999999999999999
Q ss_pred HHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCCcchhhH----------------HHHHHHHHHHHHHhCCCChHHH
Q 018506 259 TKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLM----------------AKDLNLALASAKEVGVDCPLTS 322 (355)
Q Consensus 259 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~kd~~~~~~~a~~~gv~~pi~~ 322 (355)
+++. +.++++... +. ...++|.+||.+... .||++.+++++++.|+++|+.+
T Consensus 212 ~~~~--g~gd~~~t~-----~~-----~~~rn~~~g~~l~~g~~~~~~~~~~~~~~eG~~~~~~~~~~~~~~~~~~Pl~~ 279 (308)
T PRK14619 212 YGLS--GLGDLLATC-----TS-----PLSRNYQVGYGLAQGKSLEQILAELEGTAEGVNTANVLVQLAQQQNIAVPITE 279 (308)
T ss_pred cccc--chhhhheee-----cC-----CCCccHHHHHHHHCCCCHHHHHHhcCCEeecHHHHHHHHHHHHHcCCCCCHHH
Confidence 9853 444433311 11 124566666666665 8999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCcHHHHHHHHhcCCC
Q 018506 323 QAQDIYAKLCENGHDSKDFSCVFQHYYGGKD 353 (355)
Q Consensus 323 ~~~~~~~~~~~~g~g~~d~~~~~~~~~~~~~ 353 (355)
++++++ +++.+...+++.++++..
T Consensus 280 ~v~~i~-------~~~~~~~~~~~~l~~~~~ 303 (308)
T PRK14619 280 QVYRLL-------QGEITPQQALEELMERDL 303 (308)
T ss_pred HHHHHH-------cCCCCHHHHHHHHHcCCC
Confidence 999999 477788888888777543
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6e-25 Score=201.82 Aligned_cols=257 Identities=16% Similarity=0.216 Sum_probs=205.6
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC-------------------C-CCCCCCHHHHhhcCCEE
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-------------------G-VPTKETPFEVAEASDVV 105 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~-------------------g-~~~~~s~~e~~~~aDiV 105 (355)
|||+|||+|.+|...+..|++.||+|+.+|.++++++.+++. | ..++++..++++++|++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~ 80 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV 80 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence 899999999999999999999999999999999999988764 1 55678899999999999
Q ss_pred EEeCCCch---------HHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCC
Q 018506 106 ITMLPSSS---------HVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAP 176 (355)
Q Consensus 106 i~~v~~~~---------~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p 176 (355)
|+||++|. .++++...+.+.+. +.++||.-||++|.+.+.+.+.+.... .+ ..+.++..|
T Consensus 81 fIavgTP~~~dg~aDl~~V~ava~~i~~~~~-----~~~vvV~KSTVPvGt~~~v~~~i~~~~----~~--~~f~v~~NP 149 (414)
T COG1004 81 FIAVGTPPDEDGSADLSYVEAVAKDIGEILD-----GKAVVVIKSTVPVGTTEEVRAKIREEN----SG--KDFEVASNP 149 (414)
T ss_pred EEEcCCCCCCCCCccHHHHHHHHHHHHhhcC-----CCeEEEEcCCCCCCchHHHHHHHHhhc----cc--CCceEecCh
Confidence 99998884 55666666554543 337999999999999999988876421 11 136788889
Q ss_pred CC---CChHHHhcCceEEEecCCH-HHHHHHHHHHHHc---CCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018506 177 VS---GGVLAAEAGTLTFMVGGSE-DAYQAAKPLFLSM---GKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQ 249 (355)
Q Consensus 177 v~---g~~~~~~~g~~~~~~gg~~-~~~~~v~~ll~~~---g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~ 249 (355)
.+ |........+-.+++|... .+.+.+++++..+ ..++++++. ..|++.|++.|.+.+.-+++++|...+|+
T Consensus 150 EFLREG~Av~D~~~PdRIViG~~~~~a~~~~~ely~~~~~~~~p~l~t~~-~~AE~IKyaaNafLAtKIsFiNEia~ice 228 (414)
T COG1004 150 EFLREGSAVYDFLYPDRIVIGVRSERAAAVLRELYAPFLRQDVPILFTDL-REAELIKYAANAFLATKISFINEIANICE 228 (414)
T ss_pred HHhcCcchhhhccCCCeEEEccCChhHHHHHHHHHhhhhhcCCCEEEecc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87 5555555555578888744 4688899999886 444555555 79999999999999999999999999999
Q ss_pred HcCCCHHHHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 018506 250 SLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYA 329 (355)
Q Consensus 250 ~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~ 329 (355)
+.|+|.+++.+.+..-. .....++ +-+.||+..|+.||+..++..++++|.+.++++++.+.-+
T Consensus 229 ~~g~D~~~V~~gIGlD~---RIG~~fl-------------~aG~GyGGsCfPKD~~AL~~~a~~~~~~~~ll~avv~vN~ 292 (414)
T COG1004 229 KVGADVKQVAEGIGLDP---RIGNHFL-------------NAGFGYGGSCFPKDTKALIANAEELGYDPNLLEAVVEVNE 292 (414)
T ss_pred HhCCCHHHHHHHcCCCc---hhhHhhC-------------CCCCCCCCcCCcHhHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 99999999999886532 1111111 1235788999999999999999999999999999987665
Q ss_pred H
Q 018506 330 K 330 (355)
Q Consensus 330 ~ 330 (355)
.
T Consensus 293 ~ 293 (414)
T COG1004 293 R 293 (414)
T ss_pred H
Confidence 4
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.1e-25 Score=204.81 Aligned_cols=266 Identities=14% Similarity=0.147 Sum_probs=200.5
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHH-----------HhCCC-------------CCCCCHHHHhh
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMF-----------SDMGV-------------PTKETPFEVAE 100 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l-----------~~~g~-------------~~~~s~~e~~~ 100 (355)
+|+|+|||+|.||++||..|+++||+|++|||+++..+.. .+.|. ..+.++.++++
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~ 81 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVA 81 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhC
Confidence 4689999999999999999999999999999999877653 23342 46678888889
Q ss_pred cCCEEEEeCCCchHHHHHhcC-CCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCC
Q 018506 101 ASDVVITMLPSSSHVLDVYNG-PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSG 179 (355)
Q Consensus 101 ~aDiVi~~v~~~~~~~~vl~~-~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g 179 (355)
++|+|+.|+|+..+++..+.+ +.+.. ++.+++.+ ++++....++.+.+.. . +..+.++|+.+
T Consensus 82 ~ad~Vi~avpe~~~~k~~~~~~l~~~~------~~~~ii~s-sts~~~~~~la~~~~~------~----~~~~~~hp~~p 144 (308)
T PRK06129 82 DADYVQESAPENLELKRALFAELDALA------PPHAILAS-STSALLASAFTEHLAG------R----ERCLVAHPINP 144 (308)
T ss_pred CCCEEEECCcCCHHHHHHHHHHHHHhC------CCcceEEE-eCCCCCHHHHHHhcCC------c----ccEEEEecCCC
Confidence 999999999987666654433 22222 22345543 4444445666665532 1 25788888865
Q ss_pred ChHHHhcCceEEEec---CCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Q 018506 180 GVLAAEAGTLTFMVG---GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISAS 256 (355)
Q Consensus 180 ~~~~~~~g~~~~~~g---g~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~ 256 (355)
... ..+..+++ +++++++.++++++.+|+++++++..+.|. ++||+ ..++++|++.++++.|++++
T Consensus 145 ~~~----~~lveiv~~~~t~~~~~~~~~~~~~~lG~~~v~v~~~~~G~---i~nrl----~~a~~~EA~~l~~~g~~~~~ 213 (308)
T PRK06129 145 PYL----IPVVEVVPAPWTAPATLARAEALYRAAGQSPVRLRREIDGF---VLNRL----QGALLREAFRLVADGVASVD 213 (308)
T ss_pred ccc----CceEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCccH---HHHHH----HHHHHHHHHHHHHcCCCCHH
Confidence 321 13456775 789999999999999999999998766665 34443 33678999999999999999
Q ss_pred HHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCC
Q 018506 257 TLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGH 336 (355)
Q Consensus 257 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g~ 336 (355)
++.+++..+.+.+|.. ..| -. ..+.|.++|....+.||..+..+++++.+.+.|+++...+-+....+.-+
T Consensus 214 ~id~~~~~~~g~~~~~--~gp--~~-----~~d~~~~~g~~~~~~k~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (308)
T PRK06129 214 DIDAVIRDGLGLRWSF--MGP--FE-----TIDLNAPGGVADYAQRYGPMYRRMAAERGQPVPWDGELVARVEAERRAAL 284 (308)
T ss_pred HHHHHHHhccCCCccC--cCH--HH-----HHhccccccHHHHHHHHHHHHHhhccccCCCchhhHHHHHHHHHHHHHHc
Confidence 9999999988877754 222 12 23456678888899999999999999999999999988887777777778
Q ss_pred CCCcHHHHHHH
Q 018506 337 DSKDFSCVFQH 347 (355)
Q Consensus 337 g~~d~~~~~~~ 347 (355)
+..++..+.++
T Consensus 285 ~~~~~~~~~~~ 295 (308)
T PRK06129 285 PLDQLAARQAW 295 (308)
T ss_pred CCCCHHHHHHH
Confidence 88888877664
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-23 Score=203.47 Aligned_cols=256 Identities=15% Similarity=0.156 Sum_probs=197.7
Q ss_pred CceEEEEcccHHhHHHHHHHHHCC--CcEEEEeCChhHHHHHHhCC-------------------CCCCCCHHHHhhcCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAG--YKMAVHDVNCNVMKMFSDMG-------------------VPTKETPFEVAEASD 103 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G--~~V~v~dr~~~~~~~l~~~g-------------------~~~~~s~~e~~~~aD 103 (355)
||||+|||+|.+|.++|..|+++| |+|++||+++++++.+++.+ ...+++..++++++|
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~ad 80 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEAD 80 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCC
Confidence 589999999999999999999985 78999999999999876532 234566777889999
Q ss_pred EEEEeCCCch--------------HHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCC
Q 018506 104 VVITMLPSSS--------------HVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWEN 169 (355)
Q Consensus 104 iVi~~v~~~~--------------~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~ 169 (355)
++|+|||+|. .+++++..+...++ ++++||..||.+|.+++.+.+.+.+. ..| .+
T Consensus 81 vi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~-----~~~lVv~~STvp~Gtt~~~~~~l~~~----~~g--~~ 149 (473)
T PLN02353 81 IVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSK-----SDKIVVEKSTVPVKTAEAIEKILTHN----SKG--IN 149 (473)
T ss_pred EEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCC-----CCcEEEEeCCCCCChHHHHHHHHHhh----CCC--CC
Confidence 9999998764 45556655544443 56799999999999999998877542 112 23
Q ss_pred ceEEeCCCC---CChHHHhcCceEEEecCC-----HHHHHHHHHHHHHcCC-CeEEeCCcchHHHHHHHHHHHHHHHHHH
Q 018506 170 PVMLDAPVS---GGVLAAEAGTLTFMVGGS-----EDAYQAAKPLFLSMGK-NTIYCGGAGNGAAAKICNNLTMAVSMLG 240 (355)
Q Consensus 170 ~~~~~~pv~---g~~~~~~~g~~~~~~gg~-----~~~~~~v~~ll~~~g~-~~~~~g~~g~a~~~Kl~~n~~~~~~~~~ 240 (355)
+++..+|.+ |...........+++|+. +++.+.++++++.+-. .++.+.++..|+..|++.|.+.++.+++
T Consensus 150 f~v~~~PErl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~~Iaf 229 (473)
T PLN02353 150 FQILSNPEFLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQRISS 229 (473)
T ss_pred eEEEECCCccCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHHHHHH
Confidence 678888977 444444455556777763 3467889999998853 4566677899999999999999999999
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCC--C
Q 018506 241 VSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVD--C 318 (355)
Q Consensus 241 ~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~--~ 318 (355)
++|...+|++.|+|..++.++++...--.+. .. .-++|++..|+.||..++...+++.|++ +
T Consensus 230 ~NEla~lce~~giD~~eV~~~~~~d~rig~~--~l--------------~PG~G~GG~ClpkD~~~L~~~a~~~g~~~~~ 293 (473)
T PLN02353 230 VNAMSALCEATGADVSQVSHAVGKDSRIGPK--FL--------------NASVGFGGSCFQKDILNLVYICECNGLPEVA 293 (473)
T ss_pred HHHHHHHHHHhCCCHHHHHHHhCCCCcCCCC--CC--------------CCCCCCCCcchhhhHHHHHHHHHHcCCchHH
Confidence 9999999999999999999988753210010 00 1134677899999999999999999998 7
Q ss_pred hHHHHHHHH
Q 018506 319 PLTSQAQDI 327 (355)
Q Consensus 319 pi~~~~~~~ 327 (355)
++++++.++
T Consensus 294 ~l~~~~~~i 302 (473)
T PLN02353 294 EYWKQVIKM 302 (473)
T ss_pred HHHHHHHHH
Confidence 777776643
|
|
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.5e-24 Score=195.20 Aligned_cols=255 Identities=21% Similarity=0.297 Sum_probs=195.9
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC-------------------C-CCCCCCHHHHhhcCCEE
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-------------------G-VPTKETPFEVAEASDVV 105 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~-------------------g-~~~~~s~~e~~~~aDiV 105 (355)
++|||||+|.+|.++|..++++|++|+++|.++.+++.+++. | ...++++.++ +.||++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l-~~~dv~ 88 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEEL-KECDVF 88 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhc-ccCCEE
Confidence 899999999999999999999999999999999999888763 2 3445556555 499999
Q ss_pred EEeCCCch---------HHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCC--CCceEEe
Q 018506 106 ITMLPSSS---------HVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW--ENPVMLD 174 (355)
Q Consensus 106 i~~v~~~~---------~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~--~~~~~~~ 174 (355)
|+|||+|- .+++....+.+.|+ +|.+||.-||++|.+++++...+.+ ...|.. .++.+..
T Consensus 89 iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~-----kG~LVIlEST~~PGTTe~v~~plle----~~sgL~~~~Df~lay 159 (436)
T COG0677 89 IICVPTPLKKYREPDLSYVESAARSIAPVLK-----KGDLVILESTTPPGTTEEVVKPLLE----ERSGLKFGEDFYLAY 159 (436)
T ss_pred EEEecCCcCCCCCCChHHHHHHHHHHHHhcC-----CCCEEEEecCCCCCcHHHHHHHHHh----hcCCCcccceeeEee
Confidence 99999872 44444444444553 6779999999999999999998865 223332 2344455
Q ss_pred CCCC---CChHHHhcCceEEEecCCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 018506 175 APVS---GGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSL 251 (355)
Q Consensus 175 ~pv~---g~~~~~~~g~~~~~~gg~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~ 251 (355)
+|.- |...........++.|-+++..+.++.+++.+-..++.+.+...|++.|+..|.+..+++++++|...+|.++
T Consensus 160 sPERv~PG~~~~el~~~~kVIgG~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN~fRdVNIALaNElali~~~~ 239 (436)
T COG0677 160 SPERVLPGNVLKELVNNPKVIGGVTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTENTFRDVNIALANELALICNAM 239 (436)
T ss_pred CccccCCCchhhhhhcCCceeecCCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 6643 4333333344456666688999999999999987788888899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 018506 252 GISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIY 328 (355)
Q Consensus 252 Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~ 328 (355)
|+|..++.++++.-+ | ...+.|. ||.+..|...|-.++...++++|+++.+.++++++-
T Consensus 240 GIdvwevIeaAnt~P---~-~~~~~PG--------------pGvGGHCIpvDP~fl~~ka~~yg~~~rlI~tAreIN 298 (436)
T COG0677 240 GIDVWEVIEAANTKP---R-VNIFYPG--------------PGVGGHCIPVDPYFLTWKAPEYGLPARLIRTAREIN 298 (436)
T ss_pred CCcHHHHHHHhccCC---c-eeecCCC--------------CCCCCcccccCchheeecccccCCchHHHHHHHHHh
Confidence 999999999998632 2 2333332 355566777788788888888888887777766543
|
|
| >COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-24 Score=197.09 Aligned_cols=259 Identities=22% Similarity=0.314 Sum_probs=197.9
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC-----CCCCCCCHHHHh---hcCCEEEEeCCCchHH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-----GVPTKETPFEVA---EASDVVITMLPSSSHV 115 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~-----g~~~~~s~~e~~---~~aDiVi~~v~~~~~~ 115 (355)
..+.||+||+|.||+.+|.+++++||.|.+|||++++.+++.+. .+..+.|++|.+ +...-|+++|.....+
T Consensus 2 ~~~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~V 81 (473)
T COG0362 2 MKADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPV 81 (473)
T ss_pred CccceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcH
Confidence 34679999999999999999999999999999999999998763 355677888764 6789999999887778
Q ss_pred HHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecC
Q 018506 116 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG 195 (355)
Q Consensus 116 ~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg 195 (355)
+.+++.+.+++. ++.++||-.+.....+.+-.+.+.+ . |++|+...++|+...+..|+ .+|.||
T Consensus 82 D~~I~~L~p~Le-----~gDIiIDGGNs~y~DT~RR~~eL~~------~----Gi~FvG~GVSGGEeGA~~GP-SiMpGG 145 (473)
T COG0362 82 DAVIEQLLPLLE-----KGDIIIDGGNSHYKDTIRRNKELSE------K----GILFVGMGVSGGEEGARHGP-SIMPGG 145 (473)
T ss_pred HHHHHHHHhhcC-----CCCEEEeCCCcCCchHHHHHHHHHh------c----CCeEEeccccccccccccCC-CcCCCC
Confidence 899998888875 4569999998874444444444432 2 38999999999999999999 999999
Q ss_pred CHHHHHHHHHHHHHcC------CCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHH---hc
Q 018506 196 SEDAYQAAKPLFLSMG------KNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS-LGISASTLTKILN---SS 265 (355)
Q Consensus 196 ~~~~~~~v~~ll~~~g------~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~-~Gi~~~~~~~~~~---~~ 265 (355)
++++++.++++|+.+. .++.|+|+-|+++.+|+++|.+.+.-+++++|++.+.+. .|++.+++.+++. .+
T Consensus 146 ~~eay~~v~pil~~IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~ei~~vF~~WN~g 225 (473)
T COG0362 146 QKEAYELVAPILTKIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAEVFEEWNKG 225 (473)
T ss_pred CHHHHHHHHHHHHHHHhhcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhccC
Confidence 9999999999999996 345799999999999999999999999999999999877 8999888777665 34
Q ss_pred CCCcccccCCCCCCCcccCCCCCCCCCCCcchhhHHHHH-------HHHHHHHHHhCCCChHHHHHH
Q 018506 266 SARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDL-------NLALASAKEVGVDCPLTSQAQ 325 (355)
Q Consensus 266 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~-------~~~~~~a~~~gv~~pi~~~~~ 325 (355)
...|+..+..... +. ..|-..+-.+-...-|. ++....|.++|+|+++...++
T Consensus 226 eL~SYLIeIT~~I---L~----~kD~~~~kplvd~ILD~AgQKGTGkWt~~~AldlGvP~t~I~eaV 285 (473)
T COG0362 226 ELDSYLIEITADI---LR----KKDEEGGKPLVDKILDKAGQKGTGKWTVISALDLGVPLTLITEAV 285 (473)
T ss_pred cchHHHHHHHHHH---Hh----hcCcccCCchHHHHHHHhcCCCcchhhHHHHHHcCCCcHHHHHHH
Confidence 4444433321111 10 01111111111111111 355788999999987665543
|
|
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-23 Score=190.51 Aligned_cols=290 Identities=17% Similarity=0.223 Sum_probs=212.3
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC--------------CCCCCCCHHHHhhcCCEEEEeCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM--------------GVPTKETPFEVAEASDVVITMLP 110 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~--------------g~~~~~s~~e~~~~aDiVi~~v~ 110 (355)
+|||+|||.|.||++||..|+++||+|.+|.|+++.+++++.. ++.+++++.++++++|+|++++|
T Consensus 1 ~~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avP 80 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVP 80 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECC
Confidence 5899999999999999999999999999999999999988763 24567899999999999999999
Q ss_pred CchHHHHHhcCCCccccCCCCCCCeEEEEcCCCC-HHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCce
Q 018506 111 SSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID-PQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTL 189 (355)
Q Consensus 111 ~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~-~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~ 189 (355)
. +.+++++..+.+.+. ++.+++.++.+. +.+.+.+.+.+.+. .+.. .+.++++|.+.........+.
T Consensus 81 s-~~~r~v~~~l~~~l~-----~~~~iv~~sKGie~~t~~l~seii~e~----l~~~--~~~vLSGPs~A~EVa~g~pta 148 (329)
T COG0240 81 S-QALREVLRQLKPLLL-----KDAIIVSATKGLEPETGRLLSEIIEEE----LPDN--PIAVLSGPSFAKEVAQGLPTA 148 (329)
T ss_pred h-HHHHHHHHHHhhhcc-----CCCeEEEEeccccCCCcchHHHHHHHH----cCCC--eEEEEECccHHHHHhcCCCcE
Confidence 7 699999988765553 556888888765 54555566655431 1111 167899998877666666776
Q ss_pred EEEecCCHHHHHHHHHHHHHcCCCeEEeCC-c----------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 018506 190 TFMVGGSEDAYQAAKPLFLSMGKNTIYCGG-A----------------GNGAAAKICNNLTMAVSMLGVSEALTLGQSLG 252 (355)
Q Consensus 190 ~~~~gg~~~~~~~v~~ll~~~g~~~~~~g~-~----------------g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~G 252 (355)
+.+.+-|.+..++++.+|..-..+++...+ . |....+.+..|.-.+.+...++|+..++.++|
T Consensus 149 ~~vas~d~~~a~~v~~~f~~~~Frvy~~~Dv~GveigGAlKNViAIA~Gi~dGlg~G~NakaalitrGL~Em~rlg~~lG 228 (329)
T COG0240 149 VVVASNDQEAAEKVQALFSSPYFRVYTSTDVIGVEIGGALKNVIAIAAGIADGLGLGDNAKAALITRGLAEMTRLGVALG 228 (329)
T ss_pred EEEecCCHHHHHHHHHHhCCCcEEEEecCchhhhHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHhHHHHHHHHHHHhC
Confidence 777778999999999999986655554333 1 33344446677778889999999999999999
Q ss_pred CCHHHHHHHHHhcCC--CcccccCCCCCCCcccCCC--CCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 018506 253 ISASTLTKILNSSSA--RCWSSDSYNPVPGVMEGVP--ASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIY 328 (355)
Q Consensus 253 i~~~~~~~~~~~~~~--~s~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~ 328 (355)
-+++++..+...|+. ++.....++...+.+-+.- .+........+....+....+.++++++++++|+++++++++
T Consensus 229 ~~~~T~~gLsGlGDLilTCts~~SRN~r~G~~lg~g~~~~e~l~~~g~vvEGv~t~k~v~~la~~~~i~mPI~~~Vy~vl 308 (329)
T COG0240 229 AKPETFMGLSGLGDLILTCTSPLSRNRRFGLLLGQGLSLDEALEEIGQVVEGVRTAKAVYELAKKLGIEMPITEAVYRVL 308 (329)
T ss_pred CCcchhcccccccceeEecCCCccccHHHHHHHhCCCCHHHHHHhcCCeeecHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 999999888776663 3332223333333221110 000000112345566777899999999999999999999998
Q ss_pred HHHHHCCCCCCcHHHHHHHHhcCCC
Q 018506 329 AKLCENGHDSKDFSCVFQHYYGGKD 353 (355)
Q Consensus 329 ~~~~~~g~g~~d~~~~~~~~~~~~~ 353 (355)
. +..+...+++.+..+..
T Consensus 309 ~-------~~~~~~~~~~~L~~r~~ 326 (329)
T COG0240 309 Y-------EGLDPKEAIEELMGRDL 326 (329)
T ss_pred h-------CCCCHHHHHHHHhcccc
Confidence 6 66677778777766554
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.6e-23 Score=193.62 Aligned_cols=265 Identities=17% Similarity=0.183 Sum_probs=175.4
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCC-----------------CCCCHHHHhhcCCEEEE
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-----------------TKETPFEVAEASDVVIT 107 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~-----------------~~~s~~e~~~~aDiVi~ 107 (355)
||||+|||+|.||+.+|..|+++||+|++|+|++ ..+.+++.|.. ..++. +.+..+|+||+
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil 79 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAAGADVTLIGRAR-IGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLV 79 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCcEEEEecHH-HHHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEE
Confidence 5899999999999999999999999999999965 34666655432 13344 56679999999
Q ss_pred eCCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCC---CChHHH
Q 018506 108 MLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVS---GGVLAA 184 (355)
Q Consensus 108 ~v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~---g~~~~~ 184 (355)
|+|.+ ++++++..+.+.+. ++++|++++++. ...+.+.+.++...+. . +..+..+ +. +.....
T Consensus 80 ~vk~~-~~~~~~~~l~~~~~-----~~~iii~~~nG~-~~~~~l~~~~~~~~~~--~----g~~~~~~-~~~~pg~~~~~ 145 (341)
T PRK08229 80 TVKSA-ATADAAAALAGHAR-----PGAVVVSFQNGV-RNADVLRAALPGATVL--A----GMVPFNV-ISRGPGAFHQG 145 (341)
T ss_pred EecCc-chHHHHHHHHhhCC-----CCCEEEEeCCCC-CcHHHHHHhCCCCcEE--E----EEEEEEE-EecCCceEEec
Confidence 99986 66777765544432 456777776543 3335566655421100 0 0111111 12 111122
Q ss_pred hcCceEEEecCCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHH--------------------HHHHHHH
Q 018506 185 EAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVS--------------------MLGVSEA 244 (355)
Q Consensus 185 ~~g~~~~~~gg~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~--------------------~~~~~Ea 244 (355)
..+++.+ + +.+.++.+.++|+..+.++.+.++++.+.|.|++.|.+.... ..++.|+
T Consensus 146 ~~g~l~~--~-~~~~~~~~~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~E~ 222 (341)
T PRK08229 146 TSGALAI--E-ASPALRPFAAAFARAGLPLVTHEDMRAVQWAKLLLNLNNAVNALSGLPLKEELAQRSYRRCLALAQREA 222 (341)
T ss_pred CCCceEe--c-CCchHHHHHHHHHhcCCCceecchhHHHHHHHHHHHhccHHHHHhCCchHHHhcCchHHHHHHHHHHHH
Confidence 2444333 2 335578999999999999999999999999999999743322 3778999
Q ss_pred HHHHHHcCCCHHHHHHHHHhcCC-----CcccccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHH------------HH
Q 018506 245 LTLGQSLGISASTLTKILNSSSA-----RCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLN------------LA 307 (355)
Q Consensus 245 ~~la~~~Gi~~~~~~~~~~~~~~-----~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~------------~~ 307 (355)
+.++++.|++++.+.++..++.. .++...... . .....++. ....|.+|+. ++
T Consensus 223 ~~va~a~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~---~~~Sm~~D~~~~r~tEi~~i~G~i 292 (341)
T PRK08229 223 LRVLKAAGIRPARLTPLPPAWIPRLLRLPDPLFRRLA--G-----RMLAIDPL---ARSSMSDDLAAGRATEIDWINGEI 292 (341)
T ss_pred HHHHHHcCCCccccCCCChhhhhhhhcCChHHHHHHH--H-----HhhccCCc---cCchHHHHHHcCCcchHHHHhhHH
Confidence 99999999987654433322210 001000000 0 01111221 2356889998 79
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHHHCCCCC
Q 018506 308 LASAKEVGVDCPLTSQAQDIYAKLCENGHDS 338 (355)
Q Consensus 308 ~~~a~~~gv~~pi~~~~~~~~~~~~~~g~g~ 338 (355)
++.|+++|+++|+++.++++++..++.|...
T Consensus 293 ~~~a~~~gv~~P~~~~~~~~~~~~~~~~~~~ 323 (341)
T PRK08229 293 VRLAGRLGAPAPVNARLCALVHEAERAGARP 323 (341)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHHHHhCCCcC
Confidence 9999999999999999999999999987543
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-22 Score=186.17 Aligned_cols=245 Identities=16% Similarity=0.252 Sum_probs=175.3
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCC----CcEEEEeCCh-hHHHHHHh-CCCCCCCCHHHHhhcCCEEEEeCCCchHHH
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAG----YKMAVHDVNC-NVMKMFSD-MGVPTKETPFEVAEASDVVITMLPSSSHVL 116 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G----~~V~v~dr~~-~~~~~l~~-~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~ 116 (355)
|+.|||+|||+|+||.+|+++|.++| ++|++|||++ ++.+.+.. .|+..+.++.++++++|+||+|+|+ +++.
T Consensus 1 ~~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p-~~~~ 79 (279)
T PRK07679 1 MSIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKP-KDVA 79 (279)
T ss_pred CCCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCH-HHHH
Confidence 34589999999999999999999998 7899999976 46677765 4777788888999999999999996 5777
Q ss_pred HHhcCCCccccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCC---hHHHhcCceEEE
Q 018506 117 DVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGG---VLAAEAGTLTFM 192 (355)
Q Consensus 117 ~vl~~~~~~l~~~~~~~~~ivi~~-st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~---~~~~~~g~~~~~ 192 (355)
+++..+.+.+. ++++||++ ++++++..++ .++. +.|+++. ...+..+.++++
T Consensus 80 ~vl~~l~~~~~-----~~~liIs~~aGi~~~~l~~---~~~~----------------~~~v~r~mPn~~~~~~~~~t~~ 135 (279)
T PRK07679 80 EALIPFKEYIH-----NNQLIISLLAGVSTHSIRN---LLQK----------------DVPIIRAMPNTSAAILKSATAI 135 (279)
T ss_pred HHHHHHHhhcC-----CCCEEEEECCCCCHHHHHH---HcCC----------------CCeEEEECCCHHHHHhcccEEE
Confidence 77765543332 45689986 7776665444 2211 1233322 334555666778
Q ss_pred ecCC---HHHHHHHHHHHHHcCCCeE------E--eCCcchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHH
Q 018506 193 VGGS---EDAYQAAKPLFLSMGKNTI------Y--CGGAGNGAAAKICNNLTMAVSMLGVSEALT-LGQSLGISASTLTK 260 (355)
Q Consensus 193 ~gg~---~~~~~~v~~ll~~~g~~~~------~--~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~-la~~~Gi~~~~~~~ 260 (355)
++++ ++.++.++++|+.+|..++ + ++..|+++++ +..+.|++. .+++.|++++++.+
T Consensus 136 ~~~~~~~~~~~~~v~~l~~~~G~~~~v~e~~~~~~~a~~Gsgpa~-----------~~~~~eal~e~~~~~Gl~~~~a~~ 204 (279)
T PRK07679 136 SPSKHATAEHIQTAKALFETIGLVSVVEEEDMHAVTALSGSGPAY-----------IYYVVEAMEKAAKKIGLKEDVAKS 204 (279)
T ss_pred eeCCCCCHHHHHHHHHHHHhCCcEEEeCHHHhhhHHHhhcCHHHH-----------HHHHHHHHHHHHHHcCCCHHHHHH
Confidence 7765 6788999999999998665 5 5666777775 344556666 49999999999999
Q ss_pred HHHhcCCCc-ccccCCCCCCCcccCCCCCCCC-CCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCC
Q 018506 261 ILNSSSARC-WSSDSYNPVPGVMEGVPASRNY-GGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENG 335 (355)
Q Consensus 261 ~~~~~~~~s-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g 335 (355)
++..+...+ .........+..+ .+++ .|+++.. ..++..++.|+.--+.+++.+.++++.+.|
T Consensus 205 ~~~~~~~gsa~~~~~~~~~~~~l-----~~~v~spgg~t~-------~gl~~l~~~~~~~~i~~a~~~a~~r~~~l~ 269 (279)
T PRK07679 205 LILQTMIGAAEMLKASEKHPSIL-----RKEITSPGGTTE-------AGIEVLQEHRFQQALISCITQATQRSHNLG 269 (279)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHH-----HHhcCCCchHHH-------HHHHHHHHCChHHHHHHHHHHHHHHHHHHH
Confidence 998854322 2211111222222 2345 6776544 577888889999999999999999988875
|
|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.8e-22 Score=181.96 Aligned_cols=245 Identities=19% Similarity=0.249 Sum_probs=172.3
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCC----cEEEE-eCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhc
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGY----KMAVH-DVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYN 120 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~----~V~v~-dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~ 120 (355)
|||+|||+|+||.+|+++|.++|| +|++| +|++++.+.+.+.|+..++++.++++++|+||+|+| ++++++++.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl~ 79 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVLT 79 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHHH
Confidence 789999999999999999999998 89999 999999998888888888899999999999999997 578999987
Q ss_pred CCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEE-eCCCCCChHHHhcCceEEEe---cCC
Q 018506 121 GPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML-DAPVSGGVLAAEAGTLTFMV---GGS 196 (355)
Q Consensus 121 ~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~-~~pv~g~~~~~~~g~~~~~~---gg~ 196 (355)
++.+.+ .++++||+.+++.+. ..+.+..+. ..++ ..|..... ...+. +.++ +++
T Consensus 80 ~l~~~~-----~~~~~iIs~~~g~~~--~~l~~~~~~------------~~vvr~mP~~~~~--~~~~~-~~l~~~~~~~ 137 (266)
T PLN02688 80 ELRPLL-----SKDKLLVSVAAGITL--ADLQEWAGG------------RRVVRVMPNTPCL--VGEAA-SVMSLGPAAT 137 (266)
T ss_pred HHHhhc-----CCCCEEEEecCCCcH--HHHHHHcCC------------CCEEEECCCcHHH--HhCce-EEEEeCCCCC
Confidence 653333 245677766444322 233333321 1233 35543332 22233 3333 348
Q ss_pred HHHHHHHHHHHHHcCCCeEEeC---------CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 018506 197 EDAYQAAKPLFLSMGKNTIYCG---------GAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSA 267 (355)
Q Consensus 197 ~~~~~~v~~ll~~~g~~~~~~g---------~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~ 267 (355)
++.++.++++|+.+|. +++++ ..|+++++ .+.++..+.|+ +.+.|++++++.+++..+..
T Consensus 138 ~~~~~~v~~l~~~~G~-~~~~~e~~~d~~~~~~g~g~a~-------~~~~~~a~~ea---~~~~Gl~~~~a~~~~~~~~~ 206 (266)
T PLN02688 138 ADDRDLVATLFGAVGK-IWVVDEKLLDAVTGLSGSGPAY-------IFLAIEALADG---GVAAGLPRDVALSLAAQTVL 206 (266)
T ss_pred HHHHHHHHHHHHhCCC-EEEeCHHHcchhHhhhcCHHHH-------HHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHH
Confidence 8999999999999998 88764 45666665 34455556666 89999999999999988765
Q ss_pred Cccccc-CCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCC
Q 018506 268 RCWSSD-SYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENG 335 (355)
Q Consensus 268 ~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g 335 (355)
.++... .....+..+. +.-..|+.+ ....++..++.|++-.+.+++.+.++++.+.+
T Consensus 207 gs~~l~~~~~~~~~~l~----~~v~spgG~-------t~~~l~~l~~~g~~~~~~~a~~~~~~r~~~~~ 264 (266)
T PLN02688 207 GAAKMVLETGKHPGQLK----DMVTSPGGT-------TIAGVHELEKGGFRAALMNAVVAAAKRSRELS 264 (266)
T ss_pred HHHHHHHhcCCCHHHHH----HhCCCCchH-------HHHHHHHHHHCChHHHHHHHHHHHHHHHHHhc
Confidence 544311 1111111111 122234322 34678899999999999999999999998865
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.1e-21 Score=191.19 Aligned_cols=263 Identities=15% Similarity=0.128 Sum_probs=179.4
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh-------------------CC-CCCCCCHHHHhhcCCE
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-------------------MG-VPTKETPFEVAEASDV 104 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~-------------------~g-~~~~~s~~e~~~~aDi 104 (355)
.|||+|||+|.||.+||.+|+++||+|++||+++++.+.+.+ .+ +..++++.+++++||+
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~ 83 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADW 83 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCE
Confidence 468999999999999999999999999999999998766432 12 5677889999999999
Q ss_pred EEEeCCCchHHHHHhcC-CCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHH
Q 018506 105 VITMLPSSSHVLDVYNG-PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLA 183 (355)
Q Consensus 105 Vi~~v~~~~~~~~vl~~-~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~ 183 (355)
||.|+|+..+++..+.. +...+ +++ ++|++||..+.. ..+.+.+.. . +..++++|+...
T Consensus 84 Vieavpe~~~vk~~l~~~l~~~~-----~~~-~iI~SsTsgi~~-s~l~~~~~~------~----~r~~~~hP~nP~--- 143 (495)
T PRK07531 84 IQESVPERLDLKRRVLAEIDAAA-----RPD-ALIGSSTSGFLP-SDLQEGMTH------P----ERLFVAHPYNPV--- 143 (495)
T ss_pred EEEcCcCCHHHHHHHHHHHHhhC-----CCC-cEEEEcCCCCCH-HHHHhhcCC------c----ceEEEEecCCCc---
Confidence 99999998877775443 32222 133 566777776553 345554432 1 246777775411
Q ss_pred HhcCceEEEecCC---HHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCHHHHH
Q 018506 184 AEAGTLTFMVGGS---EDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLG-VSEALTLGQSLGISASTLT 259 (355)
Q Consensus 184 ~~~g~~~~~~gg~---~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~-~~Ea~~la~~~Gi~~~~~~ 259 (355)
..++++.+++|+ ++.++.++++++.+|+++++++ |.+.|++.+.+..+ ++|++.++++.|++++++.
T Consensus 144 -~~~~Lvevv~g~~t~~e~~~~~~~~~~~lG~~~v~~~--------k~~~gfi~nrl~~a~~~EA~~L~~~g~~s~~~id 214 (495)
T PRK07531 144 -YLLPLVELVGGGKTSPETIRRAKEILREIGMKPVHIA--------KEIDAFVGDRLLEALWREALWLVKDGIATTEEID 214 (495)
T ss_pred -ccCceEEEcCCCCCCHHHHHHHHHHHHHcCCEEEeec--------CCCcchhHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 234567788875 7999999999999999999887 45566666555555 5999999999999999999
Q ss_pred HHHHhcCCCcccccCCCCCCCcccCCCCCCCCCC-CcchhhHHHHHHHHHHH-HHHhCCCChHHHHHHHHHHHHHHCCCC
Q 018506 260 KILNSSSARCWSSDSYNPVPGVMEGVPASRNYGG-GFASKLMAKDLNLALAS-AKEVGVDCPLTSQAQDIYAKLCENGHD 337 (355)
Q Consensus 260 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~kd~~~~~~~-a~~~gv~~pi~~~~~~~~~~~~~~g~g 337 (355)
+++..+.+.+|... .|+ ...+..+ ..++..+.+-++-.++. ..+.+-..++.....+.+....+.-+|
T Consensus 215 ~~~~~g~g~~~~~~--Gpf--------~~~dl~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (495)
T PRK07531 215 DVIRYSFGLRWAQM--GLF--------ETYRIAGGEAGMRHFLAQFGPCLKWPWTKLMDVPDLDDALVDKIAGQSDAQSG 284 (495)
T ss_pred HHHhhccCCCcccc--chH--------HHHHhcCcHHHHHHHHHHhchhhhhHHHhccCCCccCHHHHHHHHHHHHHHcC
Confidence 99999887776521 110 0011111 11233334444444332 466665556666666665566655566
Q ss_pred CCcHHHHHH
Q 018506 338 SKDFSCVFQ 346 (355)
Q Consensus 338 ~~d~~~~~~ 346 (355)
..++..+.+
T Consensus 285 ~~~~~~~~~ 293 (495)
T PRK07531 285 GLSIRELER 293 (495)
T ss_pred CCCHHHHHH
Confidence 666655544
|
|
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-20 Score=175.95 Aligned_cols=202 Identities=19% Similarity=0.239 Sum_probs=158.8
Q ss_pred ceEEEEcccHH--------------------hHHHHHHHHHCCCcEEEEeCChh-----HHHHHHhCCCCCCCCHHHHhh
Q 018506 46 ESVGFIGLGNM--------------------GFRMASNLMKAGYKMAVHDVNCN-----VMKMFSDMGVPTKETPFEVAE 100 (355)
Q Consensus 46 mkIgiIG~G~m--------------------G~~ia~~L~~~G~~V~v~dr~~~-----~~~~l~~~g~~~~~s~~e~~~ 100 (355)
|||.|.|+|+- |.+||.+|+++||+|++|||+++ +.+.+.+.|+..++++.++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~ 80 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAK 80 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHh
Confidence 68888888864 88999999999999999999987 555677788888889999999
Q ss_pred cCCEEEEeCCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHH-HHHHHHHhhchhhhccCCCCCceEEe-CCCC
Q 018506 101 ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTS-RNISAAVSNCILKEKKDSWENPVMLD-APVS 178 (355)
Q Consensus 101 ~aDiVi~~v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~-~~l~~~~~~~~~~~~~g~~~~~~~~~-~pv~ 178 (355)
++|+||+|+|+..++++++..+.+.+ +++++|+|+||++|... +.+.+.+.... ... ++++.+ +++.
T Consensus 81 ~ADvVIlaVP~~~~v~~Vl~~L~~~L-----~~g~IVId~ST~~~~~~s~~l~~~l~~~~--~~~----gi~~~~p~~v~ 149 (342)
T PRK12557 81 HGEIHILFTPFGKKTVEIAKNILPHL-----PENAVICNTCTVSPVVLYYSLEGELRTKR--KDV----GISSMHPAAVP 149 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhhC-----CCCCEEEEecCCCHHHHHHHHHHHhcccc--ccc----CeeecCCcccc
Confidence 99999999998766888887543333 25679999999999877 66666664210 011 233432 3333
Q ss_pred CChHHHhcCceEEEecC--------CHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018506 179 GGVLAAEAGTLTFMVGG--------SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS 250 (355)
Q Consensus 179 g~~~~~~~g~~~~~~gg--------~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~ 250 (355)
|+ ..+.+.++.|+ +++.+++++++|+.+|.++++++ .|.+..+|+++|++.+...++.+|++.++++
T Consensus 150 Ga----e~g~l~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G~~v~~~~-~g~~~~vk~~~n~l~av~~a~~aE~~~l~~~ 224 (342)
T PRK12557 150 GT----PQHGHYVIAGKTTNGTELATEEQIEKCVELAESIGKEPYVVP-ADVVSAVADMGSLVTAVALSGVLDYYSVGTK 224 (342)
T ss_pred cc----ccchheEEeCCCcccccCCCHHHHHHHHHHHHHcCCEEEEeC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 33444666654 89999999999999999887777 4999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHH
Q 018506 251 LGISASTLTKILN 263 (355)
Q Consensus 251 ~Gi~~~~~~~~~~ 263 (355)
.|.++.++.+-+.
T Consensus 225 ~~~~p~~~~~~~~ 237 (342)
T PRK12557 225 IIKAPKEMIEKQI 237 (342)
T ss_pred hCCCHHHHHHHHH
Confidence 9999888765544
|
|
| >KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.9e-21 Score=172.39 Aligned_cols=256 Identities=21% Similarity=0.319 Sum_probs=196.9
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC---C--CCCCCCHHHHh---hcCCEEEEeCCCchHH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM---G--VPTKETPFEVA---EASDVVITMLPSSSHV 115 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~---g--~~~~~s~~e~~---~~aDiVi~~v~~~~~~ 115 (355)
..+.||+||++.||..++.+.+++|+.|.+|||+.++++++.+. | +....|++|.+ +....|++.|+....+
T Consensus 5 ~~~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pV 84 (487)
T KOG2653|consen 5 PKADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPV 84 (487)
T ss_pred cccchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcH
Confidence 34789999999999999999999999999999999999987652 2 45567888875 5789999999999999
Q ss_pred HHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecC
Q 018506 116 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG 195 (355)
Q Consensus 116 ~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg 195 (355)
+..++++.+++. ++.+|||-.+.....+.+-.+.+.+ . |+-|+.+.++|+...+..|+ .+|.||
T Consensus 85 D~~I~~L~p~Le-----kgDiIIDGGNs~y~dT~RR~~el~k------~----GilfvG~GVSGGEEGAR~GP-SlMpGg 148 (487)
T KOG2653|consen 85 DQFIEELVPYLE-----KGDIIIDGGNSEYQDTERRCRELAK------K----GILFVGSGVSGGEEGARYGP-SLMPGG 148 (487)
T ss_pred HHHHHHHHhhcC-----CCCEEEeCCcccCcchHHHHHHHHh------c----CcEEEecCccCcccccccCC-ccCCCC
Confidence 999998888875 5569999998874444444444432 2 38899999999999999999 899999
Q ss_pred CHHHHHHHHHHHHHcCC-------CeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHh---
Q 018506 196 SEDAYQAAKPLFLSMGK-------NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS-LGISASTLTKILNS--- 264 (355)
Q Consensus 196 ~~~~~~~v~~ll~~~g~-------~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~-~Gi~~~~~~~~~~~--- 264 (355)
+++++..++++|+.+.. ...++|+-|+++.+||++|.+.+.-+++++|++.+.++ .|++.+++.+++..
T Consensus 149 ~~~Awp~ik~ifq~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia~vF~~WN~ 228 (487)
T KOG2653|consen 149 SKEAWPHIKDIFQKIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIAEVFDDWNK 228 (487)
T ss_pred ChHHHHHHHHHHHHHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence 99999999999998842 35799999999999999999999999999999999988 88999888877753
Q ss_pred cCCCcccccCCCCCCCcccCCCCCCCCCCCcchhhHHHHH---------HHHHHHHHHhCCCChHHHHHH
Q 018506 265 SSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDL---------NLALASAKEVGVDCPLTSQAQ 325 (355)
Q Consensus 265 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~---------~~~~~~a~~~gv~~pi~~~~~ 325 (355)
+-..||..+.......+.+ + .|- ....|-+ ...+..|-++|+|.|+...++
T Consensus 229 geleSfLieIT~dIlk~~d------~--~G~--~lv~kI~D~aGqKGTGkwt~~~Ale~g~Pv~lI~eav 288 (487)
T KOG2653|consen 229 GELESFLIEITADILKFKD------E--DGK--PLVDKILDKAGQKGTGKWTVISALELGVPVTLIGEAV 288 (487)
T ss_pred cchhHHHHHHhHHHhheec------c--CCC--hHHHHHHhhhcCCCccHHHHHHHHHhCCChHHHHHHH
Confidence 3333333322211111110 0 111 1112222 245778889999998766544
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-20 Score=174.15 Aligned_cols=190 Identities=18% Similarity=0.204 Sum_probs=140.8
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh-----------C-------------CCCCCCCHHHHhhc
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----------M-------------GVPTKETPFEVAEA 101 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~-----------~-------------g~~~~~s~~e~~~~ 101 (355)
.||+|||+|.||..||..|+++||+|++||++++.++.+.+ . ++..++++.+++++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 57999999999999999999999999999999998877542 1 13346788889999
Q ss_pred CCEEEEeCCCchHHHHHhc-CCCccccCCCCCCCeEE-EEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCC
Q 018506 102 SDVVITMLPSSSHVLDVYN-GPNGLLQGGNSVRPQLL-IDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSG 179 (355)
Q Consensus 102 aDiVi~~v~~~~~~~~vl~-~~~~~l~~~~~~~~~iv-i~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g 179 (355)
||+||+|+|++.+++..+. ++.+.+ ++++++ +++||.+|.......+... ...+.||+ +|+.+
T Consensus 82 aD~Vi~avpe~~~~k~~~~~~l~~~~-----~~~~il~~~tSt~~~~~l~~~~~~~~---------r~~g~h~~-~Pv~~ 146 (288)
T PRK09260 82 ADLVIEAVPEKLELKKAVFETADAHA-----PAECYIATNTSTMSPTEIASFTKRPE---------RVIAMHFF-NPVHK 146 (288)
T ss_pred CCEEEEeccCCHHHHHHHHHHHHhhC-----CCCcEEEEcCCCCCHHHHHhhcCCcc---------cEEEEecC-CCccc
Confidence 9999999999877765543 322232 245554 7899988875443322111 11236788 67655
Q ss_pred ChHHHhcCceEEEecC---CHHHHHHHHHHHHHcCCCeEEeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 018506 180 GVLAAEAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISA 255 (355)
Q Consensus 180 ~~~~~~~g~~~~~~gg---~~~~~~~v~~ll~~~g~~~~~~g~-~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~ 255 (355)
. +++.+++| ++++++.++++++.+|+.++++++ +|. +.|.+.. ..++|++.+.++.-.++
T Consensus 147 ~-------~Lve~v~g~~t~~~~~~~~~~~l~~lg~~~v~v~d~~Gf------~~nRl~~---~~~~ea~~~~~~gv~~~ 210 (288)
T PRK09260 147 M-------KLVELIRGLETSDETVQVAKEVAEQMGKETVVVNEFPGF------VTSRISA---LVGNEAFYMLQEGVATA 210 (288)
T ss_pred C-------ceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCcccH------HHHHHHH---HHHHHHHHHHHcCCCCH
Confidence 3 57888888 999999999999999999999987 432 3355443 45689998887655789
Q ss_pred HHHHHHHHhcC
Q 018506 256 STLTKILNSSS 266 (355)
Q Consensus 256 ~~~~~~~~~~~ 266 (355)
+++..++..+.
T Consensus 211 ~~iD~~~~~g~ 221 (288)
T PRK09260 211 EDIDKAIRLGL 221 (288)
T ss_pred HHHHHHHHhCC
Confidence 99988886553
|
|
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.7e-20 Score=182.11 Aligned_cols=191 Identities=19% Similarity=0.237 Sum_probs=146.5
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHH-----------HhCC-------------CCCCCCHHHHh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMF-----------SDMG-------------VPTKETPFEVA 99 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l-----------~~~g-------------~~~~~s~~e~~ 99 (355)
...||||||+|.||..||..|+.+||+|++||++++.++.. .+.| +..++++++ +
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~ 84 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-L 84 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-h
Confidence 34689999999999999999999999999999999988763 4444 456677766 4
Q ss_pred hcCCEEEEeCCCchHHHHHhcC-CCccccCCCCCCCeEE-EEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEe-CC
Q 018506 100 EASDVVITMLPSSSHVLDVYNG-PNGLLQGGNSVRPQLL-IDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-AP 176 (355)
Q Consensus 100 ~~aDiVi~~v~~~~~~~~vl~~-~~~~l~~~~~~~~~iv-i~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~-~p 176 (355)
.+||+||.|++++.+++..+.. +..+. +++.++ +|+||.++.. +++.+.. ..++.|.||++ +|
T Consensus 85 ~~aDlViEav~E~~~vK~~vf~~l~~~~-----~~~ailasntStl~i~~---la~~~~~------p~r~~G~hff~Pa~ 150 (507)
T PRK08268 85 ADCDLVVEAIVERLDVKQALFAQLEAIV-----SPDCILATNTSSLSITA---IAAALKH------PERVAGLHFFNPVP 150 (507)
T ss_pred CCCCEEEEcCcccHHHHHHHHHHHHhhC-----CCCcEEEECCCCCCHHH---HHhhcCC------cccEEEEeecCCcc
Confidence 6999999999999999987654 22222 244566 5899998863 4443321 11122489999 66
Q ss_pred CCCChHHHhcCceEEEecC---CHHHHHHHHHHHHHcCCCeEEeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 018506 177 VSGGVLAAEAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLG 252 (355)
Q Consensus 177 v~g~~~~~~~g~~~~~~gg---~~~~~~~v~~ll~~~g~~~~~~g~-~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~G 252 (355)
++ .++.+++| ++++++.+.++++.+|+.++++++ .| .+.|.+.. ..++|++.++++.+
T Consensus 151 v~---------~LvEvv~g~~Ts~~~~~~~~~l~~~lgk~pv~v~d~pG------fi~Nrll~---~~~~Ea~~l~~~g~ 212 (507)
T PRK08268 151 LM---------KLVEVVSGLATDPAVADALYALARAWGKTPVRAKDTPG------FIVNRAAR---PYYTEALRVLEEGV 212 (507)
T ss_pred cC---------eeEEEeCCCCCCHHHHHHHHHHHHHcCCceEEecCCCC------hHHHHHHH---HHHHHHHHHHHcCC
Confidence 65 35777764 899999999999999999999997 56 25555443 36799999999999
Q ss_pred CCHHHHHHHHHhcCC
Q 018506 253 ISASTLTKILNSSSA 267 (355)
Q Consensus 253 i~~~~~~~~~~~~~~ 267 (355)
++++++.+++..+.+
T Consensus 213 ~~~~~iD~al~~~~G 227 (507)
T PRK08268 213 ADPATIDAILREAAG 227 (507)
T ss_pred CCHHHHHHHHHhcCC
Confidence 999999999976543
|
|
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6e-20 Score=172.89 Aligned_cols=287 Identities=16% Similarity=0.141 Sum_probs=195.6
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCC---------------CCCCCCHHHHhhcCCEEEEe
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG---------------VPTKETPFEVAEASDVVITM 108 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g---------------~~~~~s~~e~~~~aDiVi~~ 108 (355)
.+|||+|||+|+||+++|..|+++| +|++|.|++++++.+++.+ +..++++.++++++|+||++
T Consensus 6 ~~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVila 84 (341)
T PRK12439 6 REPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMG 84 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEE
Confidence 4589999999999999999999998 6888999999998887532 12345777888899999999
Q ss_pred CCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHH-HHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcC
Q 018506 109 LPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ-TSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAG 187 (355)
Q Consensus 109 v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~-~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g 187 (355)
+|. ..+++++..+.+.+. ++.+++.++++... +.+.+.+.+.+. + .+ ....++..|.+.. ....+
T Consensus 85 vps-~~~~~vl~~i~~~l~-----~~~~vIsl~kGi~~~t~~~~se~i~~~-l---~~--~~~~~l~GP~~a~--ev~~g 150 (341)
T PRK12439 85 VPS-HGFRGVLTELAKELR-----PWVPVVSLVKGLEQGTNMRMSQIIEEV-L---PG--HPAGILAGPNIAR--EVAEG 150 (341)
T ss_pred eCH-HHHHHHHHHHHhhcC-----CCCEEEEEEeCCcCCCCCcHHHHHHHH-c---CC--CCeEEEECCCHHH--HHHcC
Confidence 996 589999988776653 33466666665543 222223333210 0 00 0134566774432 22334
Q ss_pred ce--EEEecCCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHH-----------------HHHHHHHHHHHHH
Q 018506 188 TL--TFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA-----------------VSMLGVSEALTLG 248 (355)
Q Consensus 188 ~~--~~~~gg~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~-----------------~~~~~~~Ea~~la 248 (355)
.. .++.+.+++..+.++++|+.-+.+++...++-...|-|.+-|.... .+..++.|+..++
T Consensus 151 ~~t~~via~~~~~~~~~v~~lf~~~~~~v~~s~Di~gve~~~alkNv~aia~G~~~g~~~g~n~~aali~~~~~E~~~~~ 230 (341)
T PRK12439 151 YAAAAVLAMPDQHLATRLSPLFRTRRFRVYTTDDVVGVEMAGALKNVFAIAVGMGYSLGIGENTRAMVIARALREMTKLG 230 (341)
T ss_pred CCeEEEEEeCCHHHHHHHHHHhCCCCEEEEEcCchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH
Confidence 43 3445567788899999999888888877777777888877776532 4667889999999
Q ss_pred HHcCCCHHHHHHHHHhcCC--CcccccCCCCCCCcc--cCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHH
Q 018506 249 QSLGISASTLTKILNSSSA--RCWSSDSYNPVPGVM--EGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQA 324 (355)
Q Consensus 249 ~~~Gi~~~~~~~~~~~~~~--~s~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~ 324 (355)
++.|.++++++++..-++. ++.....++...+.. +|...+.-...-..+-........+.++++++++++|+++++
T Consensus 231 ~a~G~~~~t~~gl~G~GDl~~Tc~s~~sRN~~~G~~l~~g~~~~~~~~~~~~~~EG~~~~~~~~~~~~~~~~~~Pi~~~~ 310 (341)
T PRK12439 231 VAMGGNPETFAGLAGMGDLIVTCTSQRSRNRHVGEQLGAGKPIDEIIASMNQVAEGVKAASVVMEFADEYGLNMPIAREV 310 (341)
T ss_pred HHhCCCcccccccchhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHhcCCEEehHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 9999999999988877763 333322333322221 111100000000012345566678899999999999999999
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHhcCC
Q 018506 325 QDIYAKLCENGHDSKDFSCVFQHYYGGK 352 (355)
Q Consensus 325 ~~~~~~~~~~g~g~~d~~~~~~~~~~~~ 352 (355)
++++ +++.|...+++.+..+.
T Consensus 311 ~~il-------~~~~~~~~~~~~l~~~~ 331 (341)
T PRK12439 311 DAVI-------NHGSTVEQAYRGLIAEV 331 (341)
T ss_pred HHHH-------hCCCCHHHHHHHHhcCC
Confidence 9999 57778888888877654
|
|
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.8e-19 Score=169.28 Aligned_cols=289 Identities=14% Similarity=0.074 Sum_probs=199.2
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCC-------CcEEEEeCChh-----HHHHHHhC--------------CCCCCCCHH
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAG-------YKMAVHDVNCN-----VMKMFSDM--------------GVPTKETPF 96 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G-------~~V~v~dr~~~-----~~~~l~~~--------------g~~~~~s~~ 96 (355)
...|||+|||.|.||+++|..|+++| |+|.+|.|+++ .++.+++. ++..++++.
T Consensus 9 ~~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ 88 (365)
T PTZ00345 9 CGPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLK 88 (365)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHH
Confidence 35689999999999999999999997 89999999986 36666643 234467888
Q ss_pred HHhhcCCEEEEeCCCchHHHHHhcCCCc--cccCCCCCCCeEEEEcCCCCH-HHH--HHHHHHHhhchhhhccCCCCCce
Q 018506 97 EVAEASDVVITMLPSSSHVLDVYNGPNG--LLQGGNSVRPQLLIDSSTIDP-QTS--RNISAAVSNCILKEKKDSWENPV 171 (355)
Q Consensus 97 e~~~~aDiVi~~v~~~~~~~~vl~~~~~--~l~~~~~~~~~ivi~~st~~~-~~~--~~l~~~~~~~~~~~~~g~~~~~~ 171 (355)
++++++|+||+++|. +.+++++..+.+ .+. +++++|.++.+.. .+. ..+.+.+.+. + + ..+.
T Consensus 89 eav~~aDiIvlAVPs-q~l~~vl~~l~~~~~l~-----~~~~iIS~aKGIe~~t~~~~~~sevi~e~-l----~--~~~~ 155 (365)
T PTZ00345 89 EAVEDADLLIFVIPH-QFLESVLSQIKENNNLK-----KHARAISLTKGIIVENGKPVLCSDVIEEE-L----G--IPCC 155 (365)
T ss_pred HHHhcCCEEEEEcCh-HHHHHHHHHhccccccC-----CCCEEEEEeCCcccCCCCcccHHHHHHHH-h----C--CCeE
Confidence 999999999999996 699999998876 442 3457777766543 221 2234444321 1 1 1256
Q ss_pred EEeCCCCCChHHHhcCceEEEecCCHHHHHHHHHHHHHcCCCeEEeCC-cch--HHHHH--------------HHHHHHH
Q 018506 172 MLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGG-AGN--GAAAK--------------ICNNLTM 234 (355)
Q Consensus 172 ~~~~pv~g~~~~~~~g~~~~~~gg~~~~~~~v~~ll~~~g~~~~~~g~-~g~--a~~~K--------------l~~n~~~ 234 (355)
++.+|.+.........+..++++.|.+..+.++++|+.-..+++...+ .|. +-++| +..|.-.
T Consensus 156 ~LsGPs~A~Eva~~~pt~~vias~~~~~a~~~~~lf~~~~frvy~s~Dv~GvEl~galKNviAIa~Gi~dGl~~G~N~ka 235 (365)
T PTZ00345 156 ALSGANVANDVAREEFSEATIGCEDKDDALIWQRLFDRPYFKINCVPDVIGVEVCGALKNIIALAAGFCDGLGLGTNTKS 235 (365)
T ss_pred EEECCCHHHHHHcCCCcEEEEEeCCHHHHHHHHHHhCCCcEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCChhHHH
Confidence 788998776666666666777778999999999999876655554443 222 33444 5567777
Q ss_pred HHHHHHHHHHHHHHHHcC--CCHHHHHHHHHhcCC--CcccccCCCCCCCcccCCCCC-CCCCC---C---cchhhHHHH
Q 018506 235 AVSMLGVSEALTLGQSLG--ISASTLTKILNSSSA--RCWSSDSYNPVPGVMEGVPAS-RNYGG---G---FASKLMAKD 303 (355)
Q Consensus 235 ~~~~~~~~Ea~~la~~~G--i~~~~~~~~~~~~~~--~s~~~~~~~~~~~~~~~~~~~-~~~~~---~---~~~~~~~kd 303 (355)
+.+...+.|+..+++++| .++++++++..-|+. ++.. .+++..+..-+.-.. ..+.. . ..+......
T Consensus 236 alitrgl~Em~~l~~a~g~~~~~~T~~glaG~GDLi~Tc~s--SRN~~~G~~l~~g~~~~~~~~~~~~~~~~~~vEG~~t 313 (365)
T PTZ00345 236 AIIRIGLEEMKLFGKIFFPNVMDETFFESCGLADLITTCLG--GRNVRCAAEFAKRNGKKSWEEIEAELLNGQKLQGTVT 313 (365)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCccchhccchHhHhhhcccC--CCcHHHHHHHhccCCCCCHHHHHHHhhCCcEechHHH
Confidence 889999999999999997 489999998887763 3332 344333322110000 00000 0 112234556
Q ss_pred HHHHHHHHHHhCC--CChHHHHHHHHHHHHHHCCCCCCcHHHHHHHHhcCCC
Q 018506 304 LNLALASAKEVGV--DCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGKD 353 (355)
Q Consensus 304 ~~~~~~~a~~~gv--~~pi~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~~~~ 353 (355)
...+.++++++++ ++|+++++++++. ++.+...+++.+..+..
T Consensus 314 ~~~v~~l~~~~~i~~~~Pi~~~vy~il~-------~~~~~~~~~~~l~~r~~ 358 (365)
T PTZ00345 314 LKEVYEVLESHDLKKEFPLFTVTYKIAF-------EGADPSSLIDVLSTNEL 358 (365)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHh-------CCCCHHHHHHHHHcCCC
Confidence 6788999999999 8999999999994 66677777777766543
|
|
| >PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D | Back alignment and domain information |
|---|
Probab=99.83 E-value=3e-20 Score=149.12 Aligned_cols=122 Identities=34% Similarity=0.576 Sum_probs=107.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCCcchhhH
Q 018506 221 GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLM 300 (355)
Q Consensus 221 g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (355)
|+|..+|+++|++...++.+++|++.++++.|+|++++++++..+.+.||....+.+ . .+.+++|.++|+++.+
T Consensus 1 G~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~~~~~~~--~----~~~~~~~~~~f~l~~~ 74 (122)
T PF14833_consen 1 GAGQAMKLANNLLIAANMAALAEALALAEKAGLDPEQLLDVLSAGSGGSWMLKNRAP--R----MILNGDFDPGFSLDLA 74 (122)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHTSTTHBHHHHHHHH--H----HHHTTTTCSSSBHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHccCCcCchHHHhhhh--h----hhhcccCCccchhHhh
Confidence 689999999999999999999999999999999999999999999988887654422 1 1346789999999999
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHHHHHHH
Q 018506 301 AKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 348 (355)
Q Consensus 301 ~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g~g~~d~~~~~~~~ 348 (355)
.||++++++.+++.|+|+|+.+.+.+.|+.+.++|+|++|+++++++|
T Consensus 75 ~KDl~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~D~sai~~~~ 122 (122)
T PF14833_consen 75 RKDLRLALDLAKEAGVPLPLGSAARQLYQAAKAQGGGDEDFSAIYKLL 122 (122)
T ss_dssp HHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHTTTTTSBGGGGHHHH
T ss_pred ccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHhHC
Confidence 999999999999999999999999999999999999999999999975
|
... |
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.4e-19 Score=167.12 Aligned_cols=195 Identities=20% Similarity=0.269 Sum_probs=135.2
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC-----C--------------CCCCCCHHHHhhcCCEE
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-----G--------------VPTKETPFEVAEASDVV 105 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~-----g--------------~~~~~s~~e~~~~aDiV 105 (355)
++||+|||+|.||.+||..|+++||+|++||+++++++.+.+. + +..+++..++++++|+|
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlV 83 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLV 83 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEE
Confidence 4789999999999999999999999999999999887766541 1 23456788888999999
Q ss_pred EEeCCCchH-HHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHH
Q 018506 106 ITMLPSSSH-VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAA 184 (355)
Q Consensus 106 i~~v~~~~~-~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~ 184 (355)
|+|+|...+ .+.++..+.+.+. ++.+| .+++.... ...+.+.+.. ...+.+.|+.++|..+.
T Consensus 84 i~av~~~~~~~~~v~~~l~~~~~-----~~~ii-~s~tsg~~-~~~l~~~~~~------~~~~ig~h~~~p~~~~~---- 146 (311)
T PRK06130 84 IEAVPEKLELKRDVFARLDGLCD-----PDTIF-ATNTSGLP-ITAIAQAVTR------PERFVGTHFFTPADVIP---- 146 (311)
T ss_pred EEeccCcHHHHHHHHHHHHHhCC-----CCcEE-EECCCCCC-HHHHHhhcCC------cccEEEEccCCCCccCc----
Confidence 999998754 3455554444332 33344 33333332 2355555431 00111245555553322
Q ss_pred hcCceEEEecC---CHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 018506 185 EAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKI 261 (355)
Q Consensus 185 ~~g~~~~~~gg---~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~ 261 (355)
+..++.+ +++.++.++++++.+|+.+++++....+. +++|++. ..++|++.++++.|++++++.++
T Consensus 147 ----l~~i~~g~~t~~~~~~~v~~l~~~~G~~~v~~~~d~~G~---i~nr~~~----~~~~Ea~~l~~~g~~~~~~id~~ 215 (311)
T PRK06130 147 ----LVEVVRGDKTSPQTVATTMALLRSIGKRPVLVKKDIPGF---IANRIQH----ALAREAISLLEKGVASAEDIDEV 215 (311)
T ss_pred ----eEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEEcCCCCCc---HHHHHHH----HHHHHHHHHHHcCCCCHHHHHHH
Confidence 2334443 68999999999999999989887422222 5666643 55899999999999999999999
Q ss_pred HHhcCC
Q 018506 262 LNSSSA 267 (355)
Q Consensus 262 ~~~~~~ 267 (355)
+..+.+
T Consensus 216 ~~~~~g 221 (311)
T PRK06130 216 VKWSLG 221 (311)
T ss_pred HHhcCC
Confidence 987654
|
|
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.4e-19 Score=166.47 Aligned_cols=281 Identities=14% Similarity=0.137 Sum_probs=173.0
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCC--C------------CCCCCHHHHh-hcCCEEEEeCC
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG--V------------PTKETPFEVA-EASDVVITMLP 110 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g--~------------~~~~s~~e~~-~~aDiVi~~v~ 110 (355)
|||+|||+|.||++++..|+++||+|++|+|+++.++.+++.+ . ..+++..+++ ..+|+||+++|
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavk 80 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVP 80 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeC
Confidence 6899999999999999999999999999999999888887631 1 1335566665 58999999999
Q ss_pred CchHHHHHhcCCCc-cccCCCCCCCeEEEEcCCCCHHH-----HHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHH
Q 018506 111 SSSHVLDVYNGPNG-LLQGGNSVRPQLLIDSSTIDPQT-----SRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAA 184 (355)
Q Consensus 111 ~~~~~~~vl~~~~~-~l~~~~~~~~~ivi~~st~~~~~-----~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~ 184 (355)
+ .++++++..+.+ .+. ++..++.++++.... .+.+.+.++.+ .+..+.+|.+......
T Consensus 81 s-~~~~~~l~~l~~~~l~-----~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~----------~~~~~~Gp~~a~~~~~ 144 (326)
T PRK14620 81 T-QQLRTICQQLQDCHLK-----KNTPILICSKGIEKSSLKFPSEIVNEILPNN----------PIAILSGPSFAKEIAE 144 (326)
T ss_pred H-HHHHHHHHHHHHhcCC-----CCCEEEEEEcCeeCCCCccHHHHHHHHcCCC----------ceEeecCCcHHHHHHc
Confidence 7 588998887765 443 233444455544221 12233332210 1234445532211111
Q ss_pred hcCceEEEecCCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHH-----------------HHHHHHHHHHHH
Q 018506 185 EAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA-----------------VSMLGVSEALTL 247 (355)
Q Consensus 185 ~~g~~~~~~gg~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~-----------------~~~~~~~Ea~~l 247 (355)
.......+.|.+.+..+.+.++|+.-+.+++...++-...|.|++-|.+.. .+..++.|+..+
T Consensus 145 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~Di~g~~~~k~~~N~ia~~~g~~~g~~~~~n~~~~l~~~~~~E~~~v 224 (326)
T PRK14620 145 KLPCSIVLAGQNETLGSSLISKLSNENLKIIYSQDIIGVQIGAALKNIIAIACGIVLGKNLGNNAHAAVITKGMNEIKTL 224 (326)
T ss_pred CCCcEEEEecCCHHHHHHHHHHHCCCCeEEEecCcchhhhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Confidence 112223445556666777888887777777777888788899999887533 256788899999
Q ss_pred HHHcCC--CHHHHHHHHHhcCC--CcccccCCCCCCCcc--cCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHH
Q 018506 248 GQSLGI--SASTLTKILNSSSA--RCWSSDSYNPVPGVM--EGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLT 321 (355)
Q Consensus 248 a~~~Gi--~~~~~~~~~~~~~~--~s~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~ 321 (355)
+++.|. ++++++++..-++. .+.....++...+.. +|...++-....-+.-.....++.++++++++|+++|++
T Consensus 225 ~~a~G~~~~~~~~~gl~g~gdl~~t~~~~~~rN~~~G~~l~~g~~~~d~~~~~~~~vegi~~~~~v~~~a~~~~i~~P~~ 304 (326)
T PRK14620 225 YSAKNGSIDLNTLIGPSCLGDLILTCTTLHSRNMSFGFKIGNGFNINQILSEGKSVIEGFSTVKPLISLAKKLNIELPIC 304 (326)
T ss_pred HHHhCCCCCcchhhccchhhhhhheecCCCCCcHHHHHHHHCCCCHHHHHHhCCCEeecHHHHHHHHHHHHHhCCCCCHH
Confidence 999997 78888533222111 001001111100000 000000000000011223344568999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCcHHHHHHHHh
Q 018506 322 SQAQDIYAKLCENGHDSKDFSCVFQHYY 349 (355)
Q Consensus 322 ~~~~~~~~~~~~~g~g~~d~~~~~~~~~ 349 (355)
+.+++++ +++.+...+++.++
T Consensus 305 ~~l~~~~-------~~~~~~~~~~~~~~ 325 (326)
T PRK14620 305 ESIYNLL-------YENISLEKTISVIL 325 (326)
T ss_pred HHHHHHH-------hCCCCHHHHHHHHh
Confidence 9999998 46666677666553
|
|
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.2e-19 Score=174.24 Aligned_cols=250 Identities=15% Similarity=0.160 Sum_probs=166.6
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHH-----------HhCC-------------CCCCCCHHHHh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMF-----------SDMG-------------VPTKETPFEVA 99 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l-----------~~~g-------------~~~~~s~~e~~ 99 (355)
...||+|||+|.||..||..|+++||+|++||++++.++.. .+.| +..++++++ +
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l 82 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-L 82 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-h
Confidence 34689999999999999999999999999999999987643 3333 345677765 4
Q ss_pred hcCCEEEEeCCCchHHHHHhcCC-CccccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEe-CC
Q 018506 100 EASDVVITMLPSSSHVLDVYNGP-NGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-AP 176 (355)
Q Consensus 100 ~~aDiVi~~v~~~~~~~~vl~~~-~~~l~~~~~~~~~ivi-~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~-~p 176 (355)
.+||+||.|+|++.+++..++.. ...+ +++.++. |+|+.++. ++.+.+.+ .....|.||++ +|
T Consensus 83 ~~aDlVIEav~E~~~vK~~vf~~l~~~~-----~~~~IlasnTStl~i~---~iA~~~~~------p~r~~G~HFf~Pap 148 (503)
T TIGR02279 83 ADAGLVIEAIVENLEVKKALFAQLEELC-----PADTIIASNTSSLSIT---AIAAGLAR------PERVAGLHFFNPAP 148 (503)
T ss_pred CCCCEEEEcCcCcHHHHHHHHHHHHhhC-----CCCeEEEECCCCCCHH---HHHHhcCc------ccceEEEeccCccc
Confidence 69999999999999999876542 2222 2333433 55555554 34444421 11223489999 56
Q ss_pred CCCChHHHhcCceEEEecC---CHHHHHHHHHHHHHcCCCeEEeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 018506 177 VSGGVLAAEAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLG 252 (355)
Q Consensus 177 v~g~~~~~~~g~~~~~~gg---~~~~~~~v~~ll~~~g~~~~~~g~-~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~G 252 (355)
++. ++.+++| ++++++.+.++++.+|+.++++++ .|. +.|.+.. ..++|++.++++.+
T Consensus 149 v~~---------LvEvv~g~~Ts~e~~~~~~~l~~~lgk~pv~v~d~pGf------i~Nrl~~---~~~~EA~~l~e~g~ 210 (503)
T TIGR02279 149 VMA---------LVEVVSGLATAAEVAEQLYETALAWGKQPVHCHSTPGF------IVNRVAR---PYYAEALRALEEQV 210 (503)
T ss_pred cCc---------eEEEeCCCCCCHHHHHHHHHHHHHcCCeeeEeCCCCCc------HHHHHHH---HHHHHHHHHHHcCC
Confidence 652 5778888 999999999999999999999997 553 4455443 46899999999999
Q ss_pred CCHHHHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHH-HH-hCCCChHHHHHHHHHHH
Q 018506 253 ISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASA-KE-VGVDCPLTSQAQDIYAK 330 (355)
Q Consensus 253 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a-~~-~gv~~pi~~~~~~~~~~ 330 (355)
++++++.+++..+.+.. ..|+ .+ .|+ .+++....-.....+.. .+ .-.|.++.+..++.-+.
T Consensus 211 a~~~~ID~al~~~~G~~-----mGPf-~l-------~D~---~Gldv~~~v~~~~~~~~~~~~~~~p~~~~~~~v~~G~l 274 (503)
T TIGR02279 211 AAPAVLDAALRDGAGFP-----MGPF-EL-------TDL---IGHDVNFAVTCSVFNAFWQDRRFLPSLVQQELVIAGRL 274 (503)
T ss_pred CCHHHHHHHHHhcCCCC-----cCHH-HH-------HHH---hhhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHCCCC
Confidence 99999999998654321 0110 00 011 11222111111111111 11 11345666767666677
Q ss_pred HHHCCCCCCcHH
Q 018506 331 LCENGHDSKDFS 342 (355)
Q Consensus 331 ~~~~g~g~~d~~ 342 (355)
+.+.|.|..||.
T Consensus 275 G~KtG~GfY~y~ 286 (503)
T TIGR02279 275 GRKSGLGVYDYR 286 (503)
T ss_pred ccccCCEeeeCC
Confidence 778888888884
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-18 Score=158.50 Aligned_cols=247 Identities=18% Similarity=0.214 Sum_probs=168.1
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCC----cEEEEeCChhHHHHHHh-CCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhc
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGY----KMAVHDVNCNVMKMFSD-MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYN 120 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~----~V~v~dr~~~~~~~l~~-~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~ 120 (355)
|||+|||+|+||.+|+..|.++|+ +|++|||++++++.+.+ .|+..++++.++++++|+||+|+| |+++++++.
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavk-P~~~~~vl~ 81 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIK-PDLYSSVIN 81 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeC-hHHHHHHHH
Confidence 689999999999999999999885 69999999999988875 677777788899999999999999 579999987
Q ss_pred CCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecC--CHH
Q 018506 121 GPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG--SED 198 (355)
Q Consensus 121 ~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg--~~~ 198 (355)
.+.+.++ ++++||+...+.+- ..+.+.++.. . ..+-..|. .+.....|...+..+. +++
T Consensus 82 ~l~~~~~-----~~~lvISi~AGi~i--~~l~~~l~~~-----~-----~vvR~MPN--~~~~vg~g~t~~~~~~~~~~~ 142 (272)
T PRK12491 82 QIKDQIK-----NDVIVVTIAAGKSI--KSTENEFDRK-----L-----KVIRVMPN--TPVLVGEGMSALCFNEMVTEK 142 (272)
T ss_pred HHHHhhc-----CCcEEEEeCCCCcH--HHHHHhcCCC-----C-----cEEEECCC--hHHHHcCceEEEEeCCCCCHH
Confidence 7654442 34688877766543 4555555310 0 01122232 2233344543333332 567
Q ss_pred HHHHHHHHHHHcCCCeEEeCC---------cchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCHHHHHHHHHhcCCC
Q 018506 199 AYQAAKPLFLSMGKNTIYCGG---------AGNGAAAKICNNLTMAVSMLGVSEALTL-GQSLGISASTLTKILNSSSAR 268 (355)
Q Consensus 199 ~~~~v~~ll~~~g~~~~~~g~---------~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l-a~~~Gi~~~~~~~~~~~~~~~ 268 (355)
..+.++.+|+.+|.. +.+.+ .|+++++ +..+.|++.- +.+.|++.++..+++.++...
T Consensus 143 ~~~~v~~lf~~~G~~-~~~~E~~~d~~talsgsgPAf-----------~~~~~eal~~a~v~~Gl~~~~A~~l~~~t~~G 210 (272)
T PRK12491 143 DIKEVLNIFNIFGQT-EVVNEKLMDVVTSISGSSPAY-----------VYMFIEAMADAAVLGGMPRKQAYKFAAQAVLG 210 (272)
T ss_pred HHHHHHHHHHcCCCE-EEEcHHHhhhHHHhccCcHHH-----------HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 788999999999985 44432 2444444 3445666665 999999999999999876532
Q ss_pred cc-cccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCC
Q 018506 269 CW-SSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENG 335 (355)
Q Consensus 269 s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g 335 (355)
+. ........|..+ .+...+||.+. ...++..++.|+.--+.+++.+.++++.+.+
T Consensus 211 ~a~ll~~~~~~p~~l----~~~V~sPGGtT-------~~gl~~le~~~~~~~~~~av~aa~~r~~el~ 267 (272)
T PRK12491 211 SAKMVLETGIHPGEL----KDMVCSPGGTT-------IEAVATLEEKGLRTAIISAMKRCTQKSMEMS 267 (272)
T ss_pred HHHHHHhcCCCHHHH----HHhCCCCchHH-------HHHHHHHHHCChHHHHHHHHHHHHHHHHHHH
Confidence 21 111111112222 12344565433 2578888899999999999999998887753
|
|
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.9e-18 Score=160.51 Aligned_cols=261 Identities=14% Similarity=0.181 Sum_probs=170.3
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCC-----------CCCCHHHHhhcCCEEEEeCCCchH
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-----------TKETPFEVAEASDVVITMLPSSSH 114 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~-----------~~~s~~e~~~~aDiVi~~v~~~~~ 114 (355)
|||+|||+|.||+.+|..|+++||+|++++|++++.+.+++.|.. .+++..++ +.+|+||+++|.. +
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~~-~ 78 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKAY-Q 78 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEecccc-c
Confidence 689999999999999999999999999999998888888776652 24455555 8999999999975 7
Q ss_pred HHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCC--CChHHHhcCceEEE
Q 018506 115 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVS--GGVLAAEAGTLTFM 192 (355)
Q Consensus 115 ~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~--g~~~~~~~g~~~~~ 192 (355)
+++++..+.+.+. ++++||...++. ...+.+.+.++...+. .+ ..+..+-.. +.......+. +.
T Consensus 79 ~~~~~~~l~~~l~-----~~~~iv~~~nG~-~~~~~l~~~~~~~~i~--~~----~~~~~~~~~~p~~v~~~~~g~--~~ 144 (304)
T PRK06522 79 LPAALPSLAPLLG-----PDTPVLFLQNGV-GHLEELAAYIGPERVL--GG----VVTHAAELEGPGVVRHTGGGR--LK 144 (304)
T ss_pred HHHHHHHHhhhcC-----CCCEEEEecCCC-CcHHHHHHhcCcccEE--EE----EEEEeeEecCCCEEEEcCCCC--EE
Confidence 8888887665553 334666666653 2224455544321111 00 111111111 1111122233 22
Q ss_pred ecC---CHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHH---------------------HHHHHHHHHHHHH
Q 018506 193 VGG---SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA---------------------VSMLGVSEALTLG 248 (355)
Q Consensus 193 ~gg---~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~---------------------~~~~~~~Ea~~la 248 (355)
+|. +.+..+.+.++|+..+..+....++-...|.|++.|.... ....++.|+..++
T Consensus 145 ig~~~~~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~ 224 (304)
T PRK06522 145 IGEPDGESAAAEALADLLNAAGLDVEWSPDIRTEIWRKLWVNCVINPLTALLGCTNGELLADPDYRALIRALMEEVAAVA 224 (304)
T ss_pred EeCCCCCcHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhHHHHHhCCChhHHhcCccHHHHHHHHHHHHHHHH
Confidence 332 2234677888899888877777778899999999886443 2445688999999
Q ss_pred HHcCCC--HHHHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHH
Q 018506 249 QSLGIS--ASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQD 326 (355)
Q Consensus 249 ~~~Gi~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~ 326 (355)
++.|++ .+.+.+.+....... .....++..++..|+..+-++..| ++++.++++|+++|.++.+++
T Consensus 225 ~a~G~~~~~~~~~~~~~~~~~~~-~~~~sSm~~D~~~gr~tEid~i~G-----------~~v~~a~~~gv~~P~~~~l~~ 292 (304)
T PRK06522 225 EAEGVHLSVEEVREYVRQVIQKT-AANTSSMLQDLEAGRPTEIDAIVG-----------YVLRRGRKHGIPTPLNDALYG 292 (304)
T ss_pred HHcCCCCChHHHHHHHHHHhhcc-CCCCchHHHHHHcCCCcccchhcc-----------HHHHHHHHcCCCCcHHHHHHH
Confidence 999975 344444443321110 001112234445566666665544 699999999999999999999
Q ss_pred HHHHHHHC
Q 018506 327 IYAKLCEN 334 (355)
Q Consensus 327 ~~~~~~~~ 334 (355)
+++..++.
T Consensus 293 ~~~~~~~~ 300 (304)
T PRK06522 293 LLKAKESE 300 (304)
T ss_pred HHHHHHHh
Confidence 98776553
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=9e-19 Score=162.87 Aligned_cols=262 Identities=13% Similarity=0.150 Sum_probs=167.8
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCC-------------CCCCHHHHhhcCCEEEEeCCCc
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-------------TKETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~-------------~~~s~~e~~~~aDiVi~~v~~~ 112 (355)
|||+|||+|.||..+|..|+++||+|++|+| +++.+.+++.|.. ..++..++.+.+|+||+|+|..
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~~ 79 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKAY 79 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEeccc
Confidence 7899999999999999999999999999999 8888888765431 2345566668899999999975
Q ss_pred hHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEE
Q 018506 113 SHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFM 192 (355)
Q Consensus 113 ~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~ 192 (355)
++++++..+.+.+. ++++|+...++. ...+.+.+.++...+. .++.+..++..++......+.-.+.
T Consensus 80 -~~~~~~~~l~~~~~-----~~~~ii~~~nG~-~~~~~l~~~~~~~~v~------~g~~~~~~~~~~~g~v~~~~~~~~~ 146 (305)
T PRK12921 80 -QLDAAIPDLKPLVG-----EDTVIIPLQNGI-GQLEQLEPYFGRERVL------GGVVFISAQLNGDGVVVQRADHRLT 146 (305)
T ss_pred -CHHHHHHHHHhhcC-----CCCEEEEeeCCC-ChHHHHHHhCCcccEE------EEEEEEEEEECCCeEEEEcCCCcEE
Confidence 77888876655442 345666666653 2234555555431110 0133343333321111111222334
Q ss_pred ecC----CHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHH---------------------HHHHHHHHHHHH
Q 018506 193 VGG----SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA---------------------VSMLGVSEALTL 247 (355)
Q Consensus 193 ~gg----~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~---------------------~~~~~~~Ea~~l 247 (355)
+|. ..+..+.+.++|...+..+....++-...|.|++.|...+ ....++.|+..+
T Consensus 147 iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~~~~~~l~~~~~~E~~~v 226 (305)
T PRK12921 147 FGEIPGQRSERTRAVRDALAGARLEVVLSENIRQDIWRKLLFNAVMNGMTALGRATVGGILSRPGGRDLARALLRECLAV 226 (305)
T ss_pred EcCCCCCcCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHhCccHHHHHHHHHHHHHHH
Confidence 442 2356677888888888777777788899999999996543 245678899999
Q ss_pred HHHcCCC--HHHHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHH
Q 018506 248 GQSLGIS--ASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQ 325 (355)
Q Consensus 248 a~~~Gi~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~ 325 (355)
+++.|++ .+...+.+..-... ......++..++..++..+-++. .+.++++++++|+++|.++.++
T Consensus 227 ~~a~G~~~~~~~~~~~~~~~~~~-~~~~~sSm~~D~~~gr~tEid~i-----------~G~vv~~a~~~gv~~P~~~~l~ 294 (305)
T PRK12921 227 ARAEGAPLRDDVVEEIVKIFAGA-PGDMKTSMLRDMEKGRPLEIDHL-----------QGVLLRRARAHGIPTPILDTVY 294 (305)
T ss_pred HHHcCCCCChhHHHHHHHHHhcc-CCCCCcHHHHHHHcCCcccHHHH-----------HHHHHHHHHHhCCCCcHHHHHH
Confidence 9999986 33444433321100 00000011223333333333332 2479999999999999999999
Q ss_pred HHHHHHHH
Q 018506 326 DIYAKLCE 333 (355)
Q Consensus 326 ~~~~~~~~ 333 (355)
++++....
T Consensus 295 ~~~~~~~~ 302 (305)
T PRK12921 295 ALLKAYEA 302 (305)
T ss_pred HHHHHHhh
Confidence 99877543
|
|
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=99.80 E-value=1e-18 Score=163.22 Aligned_cols=261 Identities=16% Similarity=0.103 Sum_probs=182.6
Q ss_pred eEEEEcccHHhHHHHHHHHHCC--------CcEEEEeC-----ChhHHHHHHhC--------C------CCCCCCHHHHh
Q 018506 47 SVGFIGLGNMGFRMASNLMKAG--------YKMAVHDV-----NCNVMKMFSDM--------G------VPTKETPFEVA 99 (355)
Q Consensus 47 kIgiIG~G~mG~~ia~~L~~~G--------~~V~v~dr-----~~~~~~~l~~~--------g------~~~~~s~~e~~ 99 (355)
||+|||+|+||+++|..|+++| |+|.+|.| +++..+.+++. + +..++++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 6999999999999999999999 99999998 55555555542 1 23457888999
Q ss_pred hcCCEEEEeCCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCC-HH--HHHHHHHHHhhchhhhccCCCCCceEEeCC
Q 018506 100 EASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID-PQ--TSRNISAAVSNCILKEKKDSWENPVMLDAP 176 (355)
Q Consensus 100 ~~aDiVi~~v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~-~~--~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p 176 (355)
+++|+||+++|+ +.+++++..+.+.+. +++++|.++.+. +. +...+.+.+.+. + + ..+.++.+|
T Consensus 81 ~~ADiIIlAVPs-~~i~~vl~~l~~~l~-----~~~~iVs~tKGie~~~~~~~~~se~i~e~-l----~--~~~~~lsGP 147 (342)
T TIGR03376 81 KGADILVFVIPH-QFLEGICKQLKGHVK-----PNARAISCIKGLEVSKDGVKLLSDIIEEE-L----G--IPCGVLSGA 147 (342)
T ss_pred hcCCEEEEECCh-HHHHHHHHHHHhhcC-----CCCEEEEEeCCcccCCCcCccHHHHHHHH-h----C--CCeEEeeCc
Confidence 999999999997 699999988776663 345777777665 33 333445544431 1 1 126678888
Q ss_pred CCCChHHHhcCceEEEecCC----HHHHHHHHHHHHHcCCCeEEeCC-cch--HHHHH--------------HHHHHHHH
Q 018506 177 VSGGVLAAEAGTLTFMVGGS----EDAYQAAKPLFLSMGKNTIYCGG-AGN--GAAAK--------------ICNNLTMA 235 (355)
Q Consensus 177 v~g~~~~~~~g~~~~~~gg~----~~~~~~v~~ll~~~g~~~~~~g~-~g~--a~~~K--------------l~~n~~~~ 235 (355)
.+.........+...+.+.+ .+..+.++.+|+.-..+++...+ .|. +-++| +..|.-.+
T Consensus 148 ~~A~Eva~~~pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~GvEl~galKNv~AIa~Gi~~Gl~~g~N~~aa 227 (342)
T TIGR03376 148 NLANEVAKEKFSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDDVAGVEIAGALKNVVAIAAGFVDGLGWGDNAKAA 227 (342)
T ss_pred chHHHHHcCCCceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 87666555556666677777 78899999999865555554433 222 34444 45577777
Q ss_pred HHHHHHHHHHHHHHHcCCCHH--HHHHHHHhcCC--CcccccCCCCCCCcccCCCCCCCCCCCcchh------------h
Q 018506 236 VSMLGVSEALTLGQSLGISAS--TLTKILNSSSA--RCWSSDSYNPVPGVMEGVPASRNYGGGFASK------------L 299 (355)
Q Consensus 236 ~~~~~~~Ea~~la~~~Gi~~~--~~~~~~~~~~~--~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~ 299 (355)
.+...+.|+..+++++|-+++ +++++..-++. ++.. .+++..+..-+. .|.+++ .
T Consensus 228 litrgl~Em~~l~~~~g~~~~~~T~~gl~G~GDL~~Tc~s--sRN~~~G~~l~~-------~g~~~~~~~~~~~~~~~vE 298 (342)
T TIGR03376 228 VMRRGLLEMIKFARMFFPTGEVTFTFESCGVADLITTCLG--GRNFKVGRAFAK-------TGKSLEELEKELLNGQSLQ 298 (342)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCcccccchhhhhhheeec--CccHHHHHHHHh-------cCCCHHHHHHhhcCCcEEe
Confidence 889999999999999999887 88887776663 2322 333333321110 022222 2
Q ss_pred HHHHHHHHHHHHHHhCCC--ChHHHHHHHHHH
Q 018506 300 MAKDLNLALASAKEVGVD--CPLTSQAQDIYA 329 (355)
Q Consensus 300 ~~kd~~~~~~~a~~~gv~--~pi~~~~~~~~~ 329 (355)
....+..+.+++++.+++ +|+++++++++.
T Consensus 299 G~~t~~~~~~l~~~~~i~~~~Pi~~~vy~il~ 330 (342)
T TIGR03376 299 GVATAKEVHELLKNKNKDDEFPLFEAVYQILY 330 (342)
T ss_pred eHHHHHHHHHHHHHcCCCcCCCHHHHHHHHHh
Confidence 344456789999999999 999999999985
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-18 Score=159.44 Aligned_cols=254 Identities=16% Similarity=0.117 Sum_probs=163.8
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHH-----------HHhCCC-------------CCCCCHHHHh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKM-----------FSDMGV-------------PTKETPFEVA 99 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~-----------l~~~g~-------------~~~~s~~e~~ 99 (355)
.+.||||||+|.||..||..|+.+||+|++||++++.++. +.+.|. ..+++. +.+
T Consensus 4 ~~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~ 82 (286)
T PRK07819 4 AIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDF 82 (286)
T ss_pred CccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHh
Confidence 3468999999999999999999999999999999998766 333332 256677 557
Q ss_pred hcCCEEEEeCCCchHHHHHhcCC-CccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeC-CC
Q 018506 100 EASDVVITMLPSSSHVLDVYNGP-NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA-PV 177 (355)
Q Consensus 100 ~~aDiVi~~v~~~~~~~~vl~~~-~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~-pv 177 (355)
++||+||.|+|++.+++..+... ...+ .+++.++++.|++.|.+... ..... ..++-+.||+++ |+
T Consensus 83 ~~~d~ViEav~E~~~~K~~l~~~l~~~~----~~~~~il~snTS~~~~~~la--~~~~~------~~r~~g~hf~~P~~~ 150 (286)
T PRK07819 83 ADRQLVIEAVVEDEAVKTEIFAELDKVV----TDPDAVLASNTSSIPIMKLA--AATKR------PGRVLGLHFFNPVPV 150 (286)
T ss_pred CCCCEEEEecccCHHHHHHHHHHHHHhh----CCCCcEEEECCCCCCHHHHH--hhcCC------CccEEEEecCCCccc
Confidence 89999999999999999876542 2222 02567887777776664333 32211 111224788884 44
Q ss_pred CCChHHHhcCceEEEecCCHHHHHHHHHHHH-HcCCCeEEeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 018506 178 SGGVLAAEAGTLTFMVGGSEDAYQAAKPLFL-SMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISA 255 (355)
Q Consensus 178 ~g~~~~~~~g~~~~~~gg~~~~~~~v~~ll~-~~g~~~~~~g~-~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~ 255 (355)
++.. ++....+.++++++.+.+++. .+|+.++.+++ +|. +.|.+. ...++|++.+.++.-.++
T Consensus 151 ~~lv------Elv~~~~T~~~~~~~~~~~~~~~lgk~pv~v~d~pGf------i~nRi~---~~~~~Ea~~ll~eGv~~~ 215 (286)
T PRK07819 151 LPLV------ELVPTLVTSEATVARAEEFASDVLGKQVVRAQDRSGF------VVNALL---VPYLLSAIRMVESGFATA 215 (286)
T ss_pred CceE------EEeCCCCCCHHHHHHHHHHHHHhCCCCceEecCCCCh------HHHHHH---HHHHHHHHHHHHhCCCCH
Confidence 4443 223333459999999999988 59999998887 443 335433 445789999987766789
Q ss_pred HHHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHH-hCCCChHHHHHHHHHHHHHHC
Q 018506 256 STLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKE-VGVDCPLTSQAQDIYAKLCEN 334 (355)
Q Consensus 256 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~-~gv~~pi~~~~~~~~~~~~~~ 334 (355)
+++..++..+.+... .| + .+....+++...+.+..+.+...+ .-.+.|+++...+.-..+.+.
T Consensus 216 ~dID~~~~~g~G~p~-----Gp----f-------~~~D~~Gld~~~~~~~~l~~~~~~~~~~p~~~l~~~v~~g~~G~k~ 279 (286)
T PRK07819 216 EDIDKAMVLGCAHPM-----GP----L-------RLSDLVGLDTVKAIADSMYEEFKEPLYAPPPLLLRMVEAGLLGKKS 279 (286)
T ss_pred HHHHHHHHhCCCCCC-----CH----H-------HHHHHhccHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHCCCCcccC
Confidence 999988876543210 11 0 011112334444433333322211 223456666666666666677
Q ss_pred CCCCCcH
Q 018506 335 GHDSKDF 341 (355)
Q Consensus 335 g~g~~d~ 341 (355)
|.|..||
T Consensus 280 g~GfY~y 286 (286)
T PRK07819 280 GRGFYTY 286 (286)
T ss_pred CCEeccC
Confidence 7777665
|
|
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.9e-18 Score=154.57 Aligned_cols=193 Identities=18% Similarity=0.287 Sum_probs=142.4
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCC--cEEEEeCChhHHHHHHhCCCC-CCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMKMFSDMGVP-TKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~--~V~v~dr~~~~~~~l~~~g~~-~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
|||+|||+|.||.+|+..|.++|+ +|++|||++++.+.+.+.|.. .+.++.++. ++|+||+|+|.. .+.+++.++
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~-~~~~~~~~l 78 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVD-AIIEILPKL 78 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHH-HHHHHHHHH
Confidence 589999999999999999999996 689999999998888777763 455777765 599999999975 666777665
Q ss_pred CccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeC-CCCCC----hHHH----hcCceEEEe
Q 018506 123 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA-PVSGG----VLAA----EAGTLTFMV 193 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~-pv~g~----~~~~----~~g~~~~~~ 193 (355)
.+ +. ++++|+|++++.+...+.+.+.. . ..|+.. |+.|+ +..+ ..|...+++
T Consensus 79 ~~-l~-----~~~iv~d~gs~k~~i~~~~~~~~--------~-----~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~ 139 (275)
T PRK08507 79 LD-IK-----ENTTIIDLGSTKAKIIESVPKHI--------R-----KNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLC 139 (275)
T ss_pred hc-cC-----CCCEEEECccchHHHHHHHHHhc--------C-----CCEEecCCcCcCchhhHHhccHHHhCCCeEEEe
Confidence 44 32 45799999887766554443321 0 234554 88764 3332 257767777
Q ss_pred c---CCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Q 018506 194 G---GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNS 264 (355)
Q Consensus 194 g---g~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~ 264 (355)
+ .+++.++.++++++.+|.+++++++.+....+++++++.. ....++++++. .+.+.+.+.++...
T Consensus 140 ~~~~~~~~~~~~v~~l~~~~G~~~~~~~~~~hD~~~a~vs~lph-~~a~~l~~~~~----~~~~~~~~~~~~~~ 208 (275)
T PRK08507 140 DVEKSGEKHQERAKEIFSGLGMRIVYMDAKEHDLHAAYISHLPH-IISFALANTVL----KEEDERNIFDLAGG 208 (275)
T ss_pred cCCCCCHHHHHHHHHHHHHhCCEEEEeCHHHHHHHHHHHhHHHH-HHHHHHHHHHH----hcCChHHHHhhccc
Confidence 5 4677899999999999999999999999999999999976 33444455542 36666666555543
|
|
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.2e-18 Score=151.10 Aligned_cols=246 Identities=21% Similarity=0.248 Sum_probs=171.4
Q ss_pred CceEEEEcccHHhHHHHHHHHHCC----CcEEEEeCChhHHHHHHh-CCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHh
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAG----YKMAVHDVNCNVMKMFSD-MGVPTKETPFEVAEASDVVITMLPSSSHVLDVY 119 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G----~~V~v~dr~~~~~~~l~~-~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl 119 (355)
+|||||||+|+||.+|+..|.++| .+|++.+|++++.+.+.+ .|+..+++..++..++|+||++|+ |+.+++++
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavK-Pq~~~~vl 79 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVK-PQDLEEVL 79 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeC-hHhHHHHH
Confidence 589999999999999999999999 589999999999975554 566667788899999999999997 68999999
Q ss_pred cCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEec--CCH
Q 018506 120 NGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVG--GSE 197 (355)
Q Consensus 120 ~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~g--g~~ 197 (355)
..+.+ .. ++++||....+.+- ..+.++++.. ..+--.|. .+.....|...+..+ .++
T Consensus 80 ~~l~~-~~-----~~~lvISiaAGv~~--~~l~~~l~~~-----------~vvR~MPN--t~a~vg~g~t~i~~~~~~~~ 138 (266)
T COG0345 80 SKLKP-LT-----KDKLVISIAAGVSI--ETLERLLGGL-----------RVVRVMPN--TPALVGAGVTAISANANVSE 138 (266)
T ss_pred HHhhc-cc-----CCCEEEEEeCCCCH--HHHHHHcCCC-----------ceEEeCCC--hHHHHcCcceeeecCccCCH
Confidence 88766 22 45677777665543 4566665311 11111232 223344455343333 267
Q ss_pred HHHHHHHHHHHHcCCCeEEeCC---------cchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCHHHHHHHHHhcCC
Q 018506 198 DAYQAAKPLFLSMGKNTIYCGG---------AGNGAAAKICNNLTMAVSMLGVSEALTL-GQSLGISASTLTKILNSSSA 267 (355)
Q Consensus 198 ~~~~~v~~ll~~~g~~~~~~g~---------~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l-a~~~Gi~~~~~~~~~~~~~~ 267 (355)
+..+.+.++|+.+|.. +.+.+ .|+++++ +..+.|++.. +.+.|++.++..+++.++..
T Consensus 139 ~~~~~v~~l~~~~G~v-~~v~E~~~da~TaisGSgPAy-----------v~~~iEal~~agv~~Gl~~~~A~~l~~~t~~ 206 (266)
T COG0345 139 EDKAFVEALLSAVGKV-VEVEESLMDAVTALSGSGPAY-----------VFLFIEALADAGVRLGLPREEARELAAQTVA 206 (266)
T ss_pred HHHHHHHHHHHhcCCe-EEechHHhhHHHHHhcCCHHH-----------HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 8888999999999974 43333 3555555 4557788887 99999999999999987653
Q ss_pred Ccc-cccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCC
Q 018506 268 RCW-SSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENG 335 (355)
Q Consensus 268 ~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g 335 (355)
.+. +.......|..+ .++..+||.+.. ..++..++.|+..-+.+++.+.++++.+.|
T Consensus 207 Gaakll~e~~~~p~~L----r~~VtSPGGtTi-------agl~~le~~g~~~~v~~av~aa~~r~~el~ 264 (266)
T COG0345 207 GAAKLLLESGEHPAEL----RDQVTSPGGTTI-------AGLRVLEEDGFRGAVIEAVEAAYKRSEELG 264 (266)
T ss_pred HHHHHHHhcCCCHHHH----HHhCcCCCchHH-------HHHHHHHHhChHHHHHHHHHHHHHHHHHhc
Confidence 221 111111122222 234556765544 456666788999999999999999888765
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-17 Score=154.81 Aligned_cols=201 Identities=13% Similarity=0.103 Sum_probs=145.7
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh-----------C---------CCCCCCCHHHHhhcC
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----------M---------GVPTKETPFEVAEAS 102 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~-----------~---------g~~~~~s~~e~~~~a 102 (355)
+...||+|||+|.||..||..|+.+||+|++||++++..+.+.+ . .+..++++++++++|
T Consensus 5 ~~i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~a 84 (321)
T PRK07066 5 TDIKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADA 84 (321)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCC
Confidence 34578999999999999999999999999999999886654322 1 235567888999999
Q ss_pred CEEEEeCCCchHHHHHhcC-CCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCCh
Q 018506 103 DVVITMLPSSSHVLDVYNG-PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGV 181 (355)
Q Consensus 103 DiVi~~v~~~~~~~~vl~~-~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~ 181 (355)
|+||.++|+..+++..+.. +...+ +++ .|+.++|+. ....++.+.+.. ..++-+.||.++|.....
T Consensus 85 DlViEavpE~l~vK~~lf~~l~~~~-----~~~-aIlaSnTS~-l~~s~la~~~~~------p~R~~g~HffnP~~~~pL 151 (321)
T PRK07066 85 DFIQESAPEREALKLELHERISRAA-----KPD-AIIASSTSG-LLPTDFYARATH------PERCVVGHPFNPVYLLPL 151 (321)
T ss_pred CEEEECCcCCHHHHHHHHHHHHHhC-----CCC-eEEEECCCc-cCHHHHHHhcCC------cccEEEEecCCccccCce
Confidence 9999999999888876653 22222 234 466555553 333456555432 222334788888765554
Q ss_pred HHHhcCceEEEecCCHHHHHHHHHHHHHcCCCeEEeC-C-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 018506 182 LAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCG-G-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLT 259 (355)
Q Consensus 182 ~~~~~g~~~~~~gg~~~~~~~v~~ll~~~g~~~~~~g-~-~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~ 259 (355)
.....+.-+ ++++++.+..+++.+|+.++.+. + +| .+.|.+. .+++.|++.+.++...+++++.
T Consensus 152 VEVv~g~~T-----~~e~~~~~~~f~~~lGk~pV~v~kd~pG------Fi~NRl~---~a~~~EA~~lv~eGvas~edID 217 (321)
T PRK07066 152 VEVLGGERT-----APEAVDAAMGIYRALGMRPLHVRKEVPG------FIADRLL---EALWREALHLVNEGVATTGEID 217 (321)
T ss_pred EEEeCCCCC-----CHHHHHHHHHHHHHcCCEeEecCCCCcc------HHHHHHH---HHHHHHHHHHHHhCCCCHHHHH
Confidence 444444434 89999999999999999888874 4 44 2446644 3457999999999889999999
Q ss_pred HHHHhcCCCcc
Q 018506 260 KILNSSSARCW 270 (355)
Q Consensus 260 ~~~~~~~~~s~ 270 (355)
.++..+.+..|
T Consensus 218 ~a~~~g~g~r~ 228 (321)
T PRK07066 218 DAIRFGAGIRW 228 (321)
T ss_pred HHHHhCCCCCc
Confidence 99988776554
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-18 Score=161.21 Aligned_cols=191 Identities=18% Similarity=0.196 Sum_probs=134.2
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHH-----------HHhCC------------CCCCCCHHHHhhc
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKM-----------FSDMG------------VPTKETPFEVAEA 101 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~-----------l~~~g------------~~~~~s~~e~~~~ 101 (355)
+.||+|||+|.||.+||..|+++|++|++||+++++++. +.+.| ....++..+++++
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRD 83 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCC
Confidence 467999999999999999999999999999999988753 32222 1223334467899
Q ss_pred CCEEEEeCCCchHHHHHhcC-CCccccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCC
Q 018506 102 SDVVITMLPSSSHVLDVYNG-PNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSG 179 (355)
Q Consensus 102 aDiVi~~v~~~~~~~~vl~~-~~~~l~~~~~~~~~ivi-~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g 179 (355)
||+||+|+|++.+++..+.. +...+ .++.+|+ ++|+.++.... +.+.. ...+.++||+++|..+
T Consensus 84 aD~Vieav~e~~~~k~~v~~~l~~~~-----~~~~il~s~tS~i~~~~l~---~~~~~------~~r~~g~h~~~pp~~~ 149 (295)
T PLN02545 84 ADFIIEAIVESEDLKKKLFSELDRIC-----KPSAILASNTSSISITRLA---SATQR------PQQVIGMHFMNPPPIM 149 (295)
T ss_pred CCEEEEcCccCHHHHHHHHHHHHhhC-----CCCcEEEECCCCCCHHHHH---hhcCC------CcceEEEeccCCcccC
Confidence 99999999988888776543 22222 2445664 78887766533 33321 1111237889888764
Q ss_pred ChHHHhcCceEEEec---CCHHHHHHHHHHHHHcCCCeEEeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 018506 180 GVLAAEAGTLTFMVG---GSEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISA 255 (355)
Q Consensus 180 ~~~~~~~g~~~~~~g---g~~~~~~~v~~ll~~~g~~~~~~g~-~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~ 255 (355)
. ++.++. .+++.++.++++++.+|+.++++++ .| . +.|.+. ...++|++.+..+...++
T Consensus 150 ~--------lveiv~g~~t~~e~~~~~~~ll~~lG~~~~~~~d~~g-----~-i~nri~---~~~~~ea~~~~~~gv~~~ 212 (295)
T PLN02545 150 K--------LVEIIRGADTSDEVFDATKALAERFGKTVVCSQDYPG-----F-IVNRIL---MPMINEAFYALYTGVASK 212 (295)
T ss_pred c--------eEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEecCccc-----H-HHHHHH---HHHHHHHHHHHHcCCCCH
Confidence 3 234443 4899999999999999999998887 34 2 334433 234789999988877889
Q ss_pred HHHHHHHHhcC
Q 018506 256 STLTKILNSSS 266 (355)
Q Consensus 256 ~~~~~~~~~~~ 266 (355)
+++..++..+.
T Consensus 213 ~~iD~~~~~g~ 223 (295)
T PLN02545 213 EDIDTGMKLGT 223 (295)
T ss_pred HHHHHHHHhcc
Confidence 99988876543
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.3e-18 Score=159.61 Aligned_cols=180 Identities=17% Similarity=0.211 Sum_probs=142.5
Q ss_pred CCceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 44 QFESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
.+++|+||| +|.||..+|..|.++||+|++|||++. +++.++++++|+||+|+|.. ....++..+
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~-------------~~~~~~~~~aDlVilavP~~-~~~~~~~~l 162 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW-------------DRAEDILADAGMVIVSVPIH-LTEEVIARL 162 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc-------------hhHHHHHhcCCEEEEeCcHH-HHHHHHHHH
Confidence 558899998 999999999999999999999998631 35677888999999999986 556667655
Q ss_pred CccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEE-eCCCCCChHHHhcCceEEEecC-CHHHH
Q 018506 123 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML-DAPVSGGVLAAEAGTLTFMVGG-SEDAY 200 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~-~~pv~g~~~~~~~g~~~~~~gg-~~~~~ 200 (355)
.+ + +++++|+|++++++.....+.+... ..|+ .+|++|+......+...++.++ +++.+
T Consensus 163 ~~-l-----~~~~iv~Dv~SvK~~~~~~~~~~~~-------------~~fvg~HPm~G~~~~~~~~~~vv~~~~~~~~~~ 223 (374)
T PRK11199 163 PP-L-----PEDCILVDLTSVKNAPLQAMLAAHS-------------GPVLGLHPMFGPDVGSLAKQVVVVCDGRQPEAY 223 (374)
T ss_pred hC-C-----CCCcEEEECCCccHHHHHHHHHhCC-------------CCEEeeCCCCCCCCcccCCCEEEEcCCCCchHH
Confidence 44 3 2578999999998877666655421 1355 7888887666667777777776 66788
Q ss_pred HHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 018506 201 QAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTK 260 (355)
Q Consensus 201 ~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~ 260 (355)
+.+.++++.+|.+++++++.+....+++++-+ .++.+++++..+++ .+.+.+.+.+
T Consensus 224 ~~~~~l~~~lG~~v~~~~~~~HD~~~a~vshL---pH~~a~al~~~l~~-~~~~~~~~~~ 279 (374)
T PRK11199 224 QWLLEQIQVWGARLHRISAVEHDQNMAFIQAL---RHFATFAYGLHLAK-ENVDLEQLLA 279 (374)
T ss_pred HHHHHHHHHCCCEEEECCHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-cCCCHHHHHH
Confidence 99999999999999999999999999999844 55566778887766 7888776543
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.1e-18 Score=158.14 Aligned_cols=174 Identities=16% Similarity=0.199 Sum_probs=131.1
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCC-CCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCCc
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-TKETPFEVAEASDVVITMLPSSSHVLDVYNGPNG 124 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~-~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~~ 124 (355)
|||+|||+|.||..++..|.++|++|++||++++..+.+.+.|.. ...+..+.++++|+||+|+|.. .+.+++.++.+
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~-~~~~~~~~l~~ 79 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIG-LLLPPSEQLIP 79 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHH-HHHHHHHHHHH
Confidence 689999999999999999999999999999999998888877642 3333345678999999999965 56666665444
Q ss_pred cccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEe-CCCCCCh-HHH-------hcCceEEEe--
Q 018506 125 LLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGV-LAA-------EAGTLTFMV-- 193 (355)
Q Consensus 125 ~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~-~pv~g~~-~~~-------~~g~~~~~~-- 193 (355)
.+. ++.+|+|++++++...+.+.+.. ..|+. +|+.|+. ... ..+...+++
T Consensus 80 ~l~-----~~~ii~d~~Svk~~~~~~~~~~~--------------~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~ 140 (279)
T PRK07417 80 ALP-----PEAIVTDVGSVKAPIVEAWEKLH--------------PRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPT 140 (279)
T ss_pred hCC-----CCcEEEeCcchHHHHHHHHHHhh--------------CCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccC
Confidence 332 45789999998877655544332 12454 6877664 222 234434443
Q ss_pred -cCCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHH
Q 018506 194 -GGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSML 239 (355)
Q Consensus 194 -gg~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~ 239 (355)
+.+++.++.++++++.+|.+++++++...+..+++++|+.......
T Consensus 141 ~~~~~~~~~~v~~l~~~lG~~~v~~~~~~hD~~~a~~shlp~~~a~~ 187 (279)
T PRK07417 141 ENTDLNALAIVEELAVSLGSKIYTADPEEHDRAVALISHLPVMVSAA 187 (279)
T ss_pred CCCCHHHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHcchHHHHHHH
Confidence 2578899999999999999999999999999999999987665543
|
|
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.1e-18 Score=156.92 Aligned_cols=260 Identities=13% Similarity=0.084 Sum_probs=165.0
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCC--------------CCCCHHHHhhcCCEEEEe
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP--------------TKETPFEVAEASDVVITM 108 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~--------------~~~s~~e~~~~aDiVi~~ 108 (355)
+..|||+|||+|.||+.+|..|+++||+|+++.|++. +.+.+.|.. ..+++ +....+|+||+|
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vila 79 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSA-EDMPPCDWVLVG 79 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcch-hhcCCCCEEEEE
Confidence 4568999999999999999999999999999999763 344443321 11222 345689999999
Q ss_pred CCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCC--hHHHhc
Q 018506 109 LPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGG--VLAAEA 186 (355)
Q Consensus 109 v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~--~~~~~~ 186 (355)
+|.. ++.+++..+.+.+. ++.+++...++. ...+.+.+.++...+.. ++.++.+...+. ......
T Consensus 80 vK~~-~~~~~~~~l~~~~~-----~~~~iv~lqNG~-~~~e~l~~~~~~~~v~~------g~~~~~a~~~~pg~v~~~~~ 146 (313)
T PRK06249 80 LKTT-ANALLAPLIPQVAA-----PDAKVLLLQNGL-GVEEQLREILPAEHLLG------GLCFICSNRVGPGVIHHLAY 146 (313)
T ss_pred ecCC-ChHhHHHHHhhhcC-----CCCEEEEecCCC-CcHHHHHHHCCCCcEEE------EeeeEeEecCCCeEEEECCC
Confidence 9986 66777776665553 234566665553 33355666655322111 122332222221 111222
Q ss_pred CceEEE-ecC-C-----HHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHH---------------------HHH
Q 018506 187 GTLTFM-VGG-S-----EDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA---------------------VSM 238 (355)
Q Consensus 187 g~~~~~-~gg-~-----~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~---------------------~~~ 238 (355)
+...+- ..+ + .+..+.+.++|+..|..+....++....|.|++.|...+ ...
T Consensus 147 g~~~iG~~~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g~l~~~~~~~~l~~ 226 (313)
T PRK06249 147 GRVNLGYHSGPAADDGITARVEEGAALFRAAGIDSQAMPDLAQARWQKLVWNIPYNGLSVLLNASTDPLMADPDSRALIR 226 (313)
T ss_pred CcEEEecCCCCcccchHHHHHHHHHHHHHhCCCCceeCchHHHHHHhHhheecchhHHHHHhCCChHHHHhCccHHHHHH
Confidence 332221 112 2 466778889999999888888899999999999886543 245
Q ss_pred HHHHHHHHHHHHcCCC--HH---HHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHH
Q 018506 239 LGVSEALTLGQSLGIS--AS---TLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKE 313 (355)
Q Consensus 239 ~~~~Ea~~la~~~Gi~--~~---~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~ 313 (355)
.++.|+..++++.|++ .+ .+.+.+..... ..-++..++.+|+..+-++.. +.+++++++
T Consensus 227 ~~~~E~~~va~a~Gi~~~~~~~~~~~~~~~~~~~-----~~sSM~qD~~~gr~tEid~i~-----------G~vv~~a~~ 290 (313)
T PRK06249 227 ALMAEVIQGAAACGHTLPEGYADHMLAVTERMPD-----YRPSMYHDFEEGRPLELEAIY-----------ANPLAAARA 290 (313)
T ss_pred HHHHHHHHHHHhcCCCCChhHHHHHHHHhhcCCC-----CCChHHHHHHCCCcccHHHHh-----------hHHHHHHHH
Confidence 5788999999999986 22 22333222111 011122334444444444433 479999999
Q ss_pred hCCCChHHHHHHHHHHHHHHC
Q 018506 314 VGVDCPLTSQAQDIYAKLCEN 334 (355)
Q Consensus 314 ~gv~~pi~~~~~~~~~~~~~~ 334 (355)
+|+++|+++.++++++..+..
T Consensus 291 ~Gi~~P~~~~l~~~l~~~e~~ 311 (313)
T PRK06249 291 AGCAMPRVEMLYQALEFLDRR 311 (313)
T ss_pred hCCCCcHHHHHHHHHHHHHhh
Confidence 999999999999988876543
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.9e-18 Score=156.78 Aligned_cols=194 Identities=18% Similarity=0.252 Sum_probs=135.0
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh--------------CC-------------CCCCCCHHH
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD--------------MG-------------VPTKETPFE 97 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~--------------~g-------------~~~~~s~~e 97 (355)
..||+|||+|.||..||..|+++|++|++||++++.++...+ .+ +..+++. +
T Consensus 3 i~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 81 (291)
T PRK06035 3 IKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-E 81 (291)
T ss_pred CcEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-H
Confidence 468999999999999999999999999999999988764221 12 1233444 5
Q ss_pred HhhcCCEEEEeCCCchHHHH-HhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEe-C
Q 018506 98 VAEASDVVITMLPSSSHVLD-VYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-A 175 (355)
Q Consensus 98 ~~~~aDiVi~~v~~~~~~~~-vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~-~ 175 (355)
+++++|+||+|+|++..++. ++..+...+. ++++++..+++. ...++.+.+.. ..++.+.||.+ +
T Consensus 82 ~~~~aDlVieav~e~~~~k~~~~~~l~~~~~-----~~~il~S~tsg~--~~~~la~~~~~------~~r~ig~hf~~P~ 148 (291)
T PRK06035 82 SLSDADFIVEAVPEKLDLKRKVFAELERNVS-----PETIIASNTSGI--MIAEIATALER------KDRFIGMHWFNPA 148 (291)
T ss_pred HhCCCCEEEEcCcCcHHHHHHHHHHHHhhCC-----CCeEEEEcCCCC--CHHHHHhhcCC------cccEEEEecCCCc
Confidence 67899999999998765454 4444433332 445665443332 33456555432 11122478888 4
Q ss_pred CCCCChHHHhcCceEEEecCCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 018506 176 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISA 255 (355)
Q Consensus 176 pv~g~~~~~~~g~~~~~~gg~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~ 255 (355)
|+.+.. ....+..+ ++++++.+.++++.+|+.++++++.+.....|+..|+ ++|++.+.++--.++
T Consensus 149 ~~~~~v-Ev~~g~~T-----~~e~~~~~~~~~~~lgk~~v~v~d~pgfv~nRl~~~~--------~~ea~~~~~~g~a~~ 214 (291)
T PRK06035 149 PVMKLI-EVVRAALT-----SEETFNTTVELSKKIGKIPIEVADVPGFFTTRFIEGW--------LLEAIRSFEIGIATI 214 (291)
T ss_pred ccCccE-EEeCCCCC-----CHHHHHHHHHHHHHcCCeEEEeCCCCCeeHHHHHHHH--------HHHHHHHHHcCCCCH
Confidence 455543 34456655 8999999999999999999999987666666666554 679988886644679
Q ss_pred HHHHHHHHhcC
Q 018506 256 STLTKILNSSS 266 (355)
Q Consensus 256 ~~~~~~~~~~~ 266 (355)
+++..++..+.
T Consensus 215 ~~iD~~~~~~~ 225 (291)
T PRK06035 215 KDIDEMCKLAF 225 (291)
T ss_pred HHHHHHHhhcC
Confidence 99998886543
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.3e-18 Score=155.71 Aligned_cols=195 Identities=15% Similarity=0.210 Sum_probs=130.8
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC-------------------------CCCCCCCHHHH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-------------------------GVPTKETPFEV 98 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~-------------------------g~~~~~s~~e~ 98 (355)
..+||+|||+|.||..+|..|+.+||+|++||++++.++...+. ++..+++.+++
T Consensus 2 ~~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a 81 (287)
T PRK08293 2 DIKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEA 81 (287)
T ss_pred CccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHH
Confidence 35789999999999999999999999999999998876654321 23356788888
Q ss_pred hhcCCEEEEeCCCchHHH-HHhcCCCccccCCCCCCCeEE-EEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCC
Q 018506 99 AEASDVVITMLPSSSHVL-DVYNGPNGLLQGGNSVRPQLL-IDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAP 176 (355)
Q Consensus 99 ~~~aDiVi~~v~~~~~~~-~vl~~~~~~l~~~~~~~~~iv-i~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p 176 (355)
++++|+||.|+|++.+++ .++.++.+.+ ++++++ .++|+..+.. +.+.+.. ..++.+.||.+++
T Consensus 82 ~~~aDlVieavpe~~~~k~~~~~~l~~~~-----~~~~ii~sntSt~~~~~---~~~~~~~------~~r~vg~Hf~~p~ 147 (287)
T PRK08293 82 VKDADLVIEAVPEDPEIKGDFYEELAKVA-----PEKTIFATNSSTLLPSQ---FAEATGR------PEKFLALHFANEI 147 (287)
T ss_pred hcCCCEEEEeccCCHHHHHHHHHHHHhhC-----CCCCEEEECcccCCHHH---HHhhcCC------cccEEEEcCCCCC
Confidence 899999999999875544 4454443333 244566 4555554543 3333221 1111225555544
Q ss_pred CCCChHHHhcCceEEEe---cCCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 018506 177 VSGGVLAAEAGTLTFMV---GGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGI 253 (355)
Q Consensus 177 v~g~~~~~~~g~~~~~~---gg~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi 253 (355)
... .+..++ ..++++++.+.++++.+|+.++.+..-..+. +.|.+. ...++|++.+.++...
T Consensus 148 ~~~--------~lvevv~~~~t~~~~~~~~~~~~~~~Gk~pv~v~~d~pgf----i~nRi~---~~~~~ea~~l~~~g~a 212 (287)
T PRK08293 148 WKN--------NTAEIMGHPGTDPEVFDTVVAFAKAIGMVPIVLKKEQPGY----ILNSLL---VPFLSAALALWAKGVA 212 (287)
T ss_pred CcC--------CeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCCCCCH----hHHHHH---HHHHHHHHHHHHcCCC
Confidence 322 222332 3488999999999999999888775312222 335543 3446899999888778
Q ss_pred CHHHHHHHHHhcCC
Q 018506 254 SASTLTKILNSSSA 267 (355)
Q Consensus 254 ~~~~~~~~~~~~~~ 267 (355)
+++++..++..+.+
T Consensus 213 ~~~~iD~a~~~~~g 226 (287)
T PRK08293 213 DPETIDKTWMIATG 226 (287)
T ss_pred CHHHHHHHHHhccC
Confidence 89999988876543
|
|
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.2e-17 Score=148.80 Aligned_cols=242 Identities=16% Similarity=0.163 Sum_probs=157.5
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCc---EEEEeCChhHHHHHHhC--CCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhc
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYK---MAVHDVNCNVMKMFSDM--GVPTKETPFEVAEASDVVITMLPSSSHVLDVYN 120 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~---V~v~dr~~~~~~~l~~~--g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~ 120 (355)
|||||||+|+||.+|++.|.+.|++ +.+|+|++++.+.+.+. +...+.++.++++++|+||+|+| ++.+.+++.
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~-p~~~~~vl~ 79 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVR-PQIAEEVLR 79 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeC-HHHHHHHHH
Confidence 5899999999999999999999864 58899999999888764 46677889999999999999999 578888886
Q ss_pred CCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecCCHHHH
Q 018506 121 GPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAY 200 (355)
Q Consensus 121 ~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg~~~~~ 200 (355)
.+. + .++++||++.... ..+.+.+.+.. . ...+...|.. +.....+ .+.++.++
T Consensus 80 ~l~--~-----~~~~~vis~~ag~--~~~~l~~~~~~------~----~~~~r~~P~~--~~a~~~g-~t~~~~~~---- 133 (258)
T PRK06476 80 ALR--F-----RPGQTVISVIAAT--DRAALLEWIGH------D----VKLVRAIPLP--FVAERKG-VTAIYPPD---- 133 (258)
T ss_pred Hhc--c-----CCCCEEEEECCCC--CHHHHHHHhCC------C----CCEEEECCCC--hhhhCCC-CeEecCCH----
Confidence 541 2 1456777766543 33556665532 1 1345566652 2222233 35555543
Q ss_pred HHHHHHHHHcCCCeEEeCCcchHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcc-c-cc
Q 018506 201 QAAKPLFLSMGKNTIYCGGAGNGAAAKICNNL-----TMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCW-S-SD 273 (355)
Q Consensus 201 ~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~-----~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~-~-~~ 273 (355)
+.++++|+.+|..++ +++. |...++ ..+.++.++.|+..++++.|+++++..+++......+. . ..
T Consensus 134 ~~~~~l~~~lG~~~~-~~~e------~~~d~~~a~~s~~a~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~G~~~l~~~ 206 (258)
T PRK06476 134 PFVAALFDALGTAVE-CDSE------EEYDLLAAASALMATYFGILETATGWLEEQGLKRQKARAYLAPLFASLAQDAVR 206 (258)
T ss_pred HHHHHHHHhcCCcEE-ECCh------HhccceeehhccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 579999999998665 4432 222222 33344456778888999999999999998886542211 1 00
Q ss_pred CCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 018506 274 SYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLC 332 (355)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~ 332 (355)
.....++.+. +...+||.+. ...++..++.|+.-.+.+++.+.++++.
T Consensus 207 ~~~~~~~~l~----~~v~spgGtT-------~~gl~~le~~~~~~~~~~a~~aa~~r~~ 254 (258)
T PRK06476 207 STKTDFSALS----REFSTKGGLN-------EQVLNDFSRQGGYAALTDALDRVLRRIN 254 (258)
T ss_pred cCCCCHHHHH----HhCCCCCchH-------HHHHHHHHHCChHHHHHHHHHHHHHHhh
Confidence 1111112221 2334554432 2467788888887777777666666543
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-17 Score=154.37 Aligned_cols=191 Identities=20% Similarity=0.268 Sum_probs=131.9
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh-----------CC-------------CCCCCCHHHHh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----------MG-------------VPTKETPFEVA 99 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~-----------~g-------------~~~~~s~~e~~ 99 (355)
..+||+|||+|.||..||..|+++|++|++||+++++++...+ .| +..+++.+ .+
T Consensus 3 ~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~ 81 (292)
T PRK07530 3 AIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DL 81 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-Hh
Confidence 4578999999999999999999999999999999988766432 12 23455664 56
Q ss_pred hcCCEEEEeCCCchHHHHH-hcCCCccccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeC-C
Q 018506 100 EASDVVITMLPSSSHVLDV-YNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA-P 176 (355)
Q Consensus 100 ~~aDiVi~~v~~~~~~~~v-l~~~~~~l~~~~~~~~~ivi-~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~-p 176 (355)
+++|+||+|+|+..+++.. +.++.+.++ ++++++ ++|+..+. .+.+.+.. ..++.+.||+++ |
T Consensus 82 ~~aD~Vieavpe~~~~k~~~~~~l~~~~~-----~~~ii~s~ts~~~~s---~la~~~~~------~~r~~g~h~~~p~~ 147 (292)
T PRK07530 82 ADCDLVIEAATEDETVKRKIFAQLCPVLK-----PEAILATNTSSISIT---RLASATDR------PERFIGIHFMNPVP 147 (292)
T ss_pred cCCCEEEEcCcCCHHHHHHHHHHHHhhCC-----CCcEEEEcCCCCCHH---HHHhhcCC------cccEEEeeccCCcc
Confidence 8999999999987666544 443333332 445665 66666554 35554421 111123678873 3
Q ss_pred CCCChHHHhcCceEEE--ecCCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 018506 177 VSGGVLAAEAGTLTFM--VGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGIS 254 (355)
Q Consensus 177 v~g~~~~~~~g~~~~~--~gg~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~ 254 (355)
+.... -++ .+++++.++.+.++++.+|+.++++++.+ -+++++++.. .++|++.+..+.-.+
T Consensus 148 ~~~~v--------ei~~g~~t~~~~~~~~~~~~~~~gk~~v~~~d~p----g~i~nRl~~~----~~~ea~~~~~~g~~~ 211 (292)
T PRK07530 148 VMKLV--------ELIRGIATDEATFEAAKEFVTKLGKTITVAEDFP----AFIVNRILLP----MINEAIYTLYEGVGS 211 (292)
T ss_pred cCceE--------EEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCcC----ChHHHHHHHH----HHHHHHHHHHhCCCC
Confidence 33221 222 24689999999999999999999988744 2555666443 367999887774458
Q ss_pred HHHHHHHHHhc
Q 018506 255 ASTLTKILNSS 265 (355)
Q Consensus 255 ~~~~~~~~~~~ 265 (355)
++++..++..+
T Consensus 212 ~~~iD~~~~~g 222 (292)
T PRK07530 212 VEAIDTAMKLG 222 (292)
T ss_pred HHHHHHHHHhC
Confidence 89988888654
|
|
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.3e-17 Score=147.66 Aligned_cols=254 Identities=18% Similarity=0.216 Sum_probs=163.7
Q ss_pred CceEEEEcccHHhHHHHHHHHHCC---CcEEEEeCChhHHHHHHhC-CCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhc
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAG---YKMAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHVLDVYN 120 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G---~~V~v~dr~~~~~~~l~~~-g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~ 120 (355)
||||+|||+|+||..++..|.++| ++|.+|+|++++.+.+.+. ++....+..++++++|+||+|+|. ..+++++.
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~-~~~~~v~~ 80 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKP-QVMEEVLS 80 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCH-HHHHHHHH
Confidence 689999999999999999999999 7899999999999888774 777778888888999999999986 47888887
Q ss_pred CCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEe-CCCCCChHHHhcCceEEEec--CCH
Q 018506 121 GPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGVLAAEAGTLTFMVG--GSE 197 (355)
Q Consensus 121 ~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~-~pv~g~~~~~~~g~~~~~~g--g~~ 197 (355)
.+.+.+ +++|+.++++.+. ..+.+.++. +.+++. .|. .+.....+...+..+ .++
T Consensus 81 ~l~~~~-------~~~vvs~~~gi~~--~~l~~~~~~-----------~~~iv~~~P~--~p~~~~~~~~~i~~~~~~~~ 138 (267)
T PRK11880 81 ELKGQL-------DKLVVSIAAGVTL--ARLERLLGA-----------DLPVVRAMPN--TPALVGAGMTALTANALVSA 138 (267)
T ss_pred HHHhhc-------CCEEEEecCCCCH--HHHHHhcCC-----------CCcEEEecCC--chHHHcCceEEEecCCCCCH
Confidence 654332 2467666665543 345444421 012222 332 233333344334444 378
Q ss_pred HHHHHHHHHHHHcCCCeEEeC-CcchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCHHHHHHHHHhcCCCcc-cccC
Q 018506 198 DAYQAAKPLFLSMGKNTIYCG-GAGNGAAAKICNNLTMAVSMLGVSEALTL-GQSLGISASTLTKILNSSSARCW-SSDS 274 (355)
Q Consensus 198 ~~~~~v~~ll~~~g~~~~~~g-~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l-a~~~Gi~~~~~~~~~~~~~~~s~-~~~~ 274 (355)
+.++.++.+|+.+|. .+++. +.-.-.+.-+..+...+ +..+.|++.. +.+.|+++++..+++........ ....
T Consensus 139 ~~~~~v~~l~~~lG~-~~~~~~e~~~d~~~a~~~~~pa~--~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~ 215 (267)
T PRK11880 139 EDRELVENLLSAFGK-VVWVDDEKQMDAVTAVSGSGPAY--VFLFIEALADAGVKLGLPREQARKLAAQTVLGAAKLLLE 215 (267)
T ss_pred HHHHHHHHHHHhCCe-EEEECChHhcchHHHHhcChHHH--HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999997 45555 32111111122222111 2234555555 78899999999888876532111 0000
Q ss_pred CCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCC
Q 018506 275 YNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENG 335 (355)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g 335 (355)
....++.+. +.-..||.+ ....++..++.|++..+.+++.+.++++.+.+
T Consensus 216 ~~~~~~~l~----~~v~tpgG~-------t~~gl~~l~~~g~~~~~~~a~~~~~~ra~~~~ 265 (267)
T PRK11880 216 SGEHPAELR----DNVTSPGGT-------TIAALRVLEEKGLRAAVIEAVQAAAKRSKELG 265 (267)
T ss_pred cCCCHHHHH----HhCCCCcHH-------HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhc
Confidence 000111110 111223322 34678889999999999999999999998864
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.4e-17 Score=150.55 Aligned_cols=195 Identities=17% Similarity=0.208 Sum_probs=130.0
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHH-----------HHHhCC-------------CCCCCCHHHHh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMK-----------MFSDMG-------------VPTKETPFEVA 99 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~-----------~l~~~g-------------~~~~~s~~e~~ 99 (355)
.++||+|||+|.||.++|..|+++|++|++||+++++++ .+.+.| +..+++.+ .+
T Consensus 2 ~~~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~ 80 (282)
T PRK05808 2 GIQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DL 80 (282)
T ss_pred CccEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hh
Confidence 456899999999999999999999999999999999874 333333 23345554 46
Q ss_pred hcCCEEEEeCCCchHHH-HHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCC-C
Q 018506 100 EASDVVITMLPSSSHVL-DVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAP-V 177 (355)
Q Consensus 100 ~~aDiVi~~v~~~~~~~-~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p-v 177 (355)
++||+||+|+|....++ +++..+.+.++ +++++ .+++.+... ..+.+.+.. ..++.+.||.+++ +
T Consensus 81 ~~aDlVi~av~e~~~~k~~~~~~l~~~~~-----~~~il-~s~ts~~~~-~~la~~~~~------~~r~ig~h~~~P~~~ 147 (282)
T PRK05808 81 KDADLVIEAATENMDLKKKIFAQLDEIAK-----PEAIL-ATNTSSLSI-TELAAATKR------PDKVIGMHFFNPVPV 147 (282)
T ss_pred ccCCeeeecccccHHHHHHHHHHHHhhCC-----CCcEE-EECCCCCCH-HHHHHhhCC------CcceEEeeccCCccc
Confidence 89999999998776666 56655444432 34455 233333222 245555421 1112236677643 3
Q ss_pred CCChHHHhcCceEEEecCCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Q 018506 178 SGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISAST 257 (355)
Q Consensus 178 ~g~~~~~~~g~~~~~~gg~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~ 257 (355)
.... ....+. +.+++..+.+.++++.+|+.++++++. . ..+.|.++ ...++|++.+.++.-.++++
T Consensus 148 ~~~v-ev~~g~-----~t~~e~~~~~~~l~~~lGk~pv~~~d~-~----g~i~~Ri~---~~~~~ea~~~~~~gv~~~~d 213 (282)
T PRK05808 148 MKLV-EIIRGL-----ATSDATHEAVEALAKKIGKTPVEVKNA-P----GFVVNRIL---IPMINEAIFVLAEGVATAED 213 (282)
T ss_pred CccE-EEeCCC-----CCCHHHHHHHHHHHHHcCCeeEEecCc-c----ChHHHHHH---HHHHHHHHHHHHhCCCCHHH
Confidence 2222 222222 248999999999999999999998772 2 23446544 34468999998776678999
Q ss_pred HHHHHHhcC
Q 018506 258 LTKILNSSS 266 (355)
Q Consensus 258 ~~~~~~~~~ 266 (355)
+..++..+.
T Consensus 214 iD~~~~~g~ 222 (282)
T PRK05808 214 IDEGMKLGC 222 (282)
T ss_pred HHHHHHhCC
Confidence 988886543
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.1e-16 Score=153.12 Aligned_cols=196 Identities=18% Similarity=0.261 Sum_probs=145.7
Q ss_pred ceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH-hCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCC
Q 018506 46 ESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS-DMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPN 123 (355)
Q Consensus 46 mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~-~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~ 123 (355)
|||+||| +|.||.+++..|.++|++|++|+|++++...+. +.|+..+.++.+++.++|+||+|+|.. .+.+++..+.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~~-~~~~vl~~l~ 79 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPIN-VTEDVIKEVA 79 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCHH-HHHHHHHHHH
Confidence 6899997 899999999999999999999999988865544 357766778888899999999999974 6677776654
Q ss_pred ccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeC-CCCCChHHHhcCceEEEecC---CHHH
Q 018506 124 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA-PVSGGVLAAEAGTLTFMVGG---SEDA 199 (355)
Q Consensus 124 ~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~-pv~g~~~~~~~g~~~~~~gg---~~~~ 199 (355)
+.+. ++++|+|++++.+...+.+.+.++. +..|+.+ |++|.......+...+++.+ +++.
T Consensus 80 ~~l~-----~~~iViDvsSvK~~~~~~l~~~~~~-----------~~~~V~~HPmaGp~~~~~~g~~~il~p~~~~~~~~ 143 (437)
T PRK08655 80 PHVK-----EGSLLMDVTSVKERPVEAMEEYAPE-----------GVEILPTHPMFGPRTPSLKGQVVILTPTEKRSNPW 143 (437)
T ss_pred hhCC-----CCCEEEEcccccHHHHHHHHHhcCC-----------CCEEEEcCCCCCCCCcccCCCEEEEecCCCCCHHH
Confidence 4442 5679999999988877777766531 2456664 88886555667777777654 5788
Q ss_pred HHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 018506 200 YQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKIL 262 (355)
Q Consensus 200 ~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~ 262 (355)
++.++++|+.+|.+++++++......+ .+.....++.+++.+..+ .+.|++.++...+.
T Consensus 144 ~~~v~~ll~~~G~~v~~~~~e~HD~~~---a~vs~lph~~a~al~~~l-~~~g~~~~~~~~~a 202 (437)
T PRK08655 144 FDKVKNFLEKEGARVIVTSPEEHDRIM---SVVQGLTHFAYISIASTL-KRLGVDIKESRKFA 202 (437)
T ss_pred HHHHHHHHHHcCCEEEECCHHHHHHHH---HHHHHHHHHHHHHHHHHH-HHcCCCHHHHHhhc
Confidence 899999999999988888875444444 333333444444444443 67799887765444
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-16 Score=148.56 Aligned_cols=265 Identities=14% Similarity=0.036 Sum_probs=167.3
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC-CCCCC-----------CCHHHHhhcCCEEEEeCCCc
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPTK-----------ETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~-g~~~~-----------~s~~e~~~~aDiVi~~v~~~ 112 (355)
.|||+|||+|.||+.+|..|+++|++|++++|+.++++.+++. |+... ....+.....|+||+|++..
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~ 81 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAY 81 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHH
Confidence 4899999999999999999999999999999998888888753 32110 11112235789999999986
Q ss_pred hHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEE
Q 018506 113 SHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFM 192 (355)
Q Consensus 113 ~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~ 192 (355)
++++++..+.+.+. ++..|+.+.++... .+.+.+.++...+. . +..++.+-..+.-.....+.-.+.
T Consensus 82 -~~~~al~~l~~~l~-----~~t~vv~lQNGv~~-~e~l~~~~~~~~v~--~----g~~~~ga~~~~pg~v~~~~~g~~~ 148 (305)
T PRK05708 82 -DAEPAVASLAHRLA-----PGAELLLLQNGLGS-QDAVAARVPHARCI--F----ASSTEGAFRDGDWRVVFAGHGFTW 148 (305)
T ss_pred -hHHHHHHHHHhhCC-----CCCEEEEEeCCCCC-HHHHHHhCCCCcEE--E----EEeeeceecCCCCEEEEeceEEEE
Confidence 77788877666553 33456666555432 24455555432111 1 122222111111000111111223
Q ss_pred ecC-CHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHcCC
Q 018506 193 VGG-SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA------------------VSMLGVSEALTLGQSLGI 253 (355)
Q Consensus 193 ~gg-~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~------------------~~~~~~~Ea~~la~~~Gi 253 (355)
+|. +.+..+.+.++|...|..+.+..++-...|.|++.|...+ .+..++.|...++++.|+
T Consensus 149 ~G~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~~l~~E~~~va~a~G~ 228 (305)
T PRK05708 149 LGDPRNPTAPAWLDDLREAGIPHEWTVDILTRLWRKLALNCAINPLTVLHDCRNGGLLEHAQEVAALCAELSELLRRCGQ 228 (305)
T ss_pred EcCCCCcchHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHccccHhHHhhCCCCcchhcCHHHHHHHHHHHHHHHHHcCC
Confidence 342 3345677888888888777778888899999999887543 245667899999999997
Q ss_pred C--HHHHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 018506 254 S--ASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKL 331 (355)
Q Consensus 254 ~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~ 331 (355)
+ .+.+.+.+....... .....++..++.+|++.+-++..| .+++.++++|+++|.++.++++++..
T Consensus 229 ~~~~~~~~~~~~~~~~~~-~~~~sSM~qD~~~gR~tEid~i~G-----------~vvr~a~~~Gv~~P~~~~l~~~v~~~ 296 (305)
T PRK05708 229 PAAAANLHEEVQRVIQAT-AANYSSMYQDVRAGRRTEISYLLG-----------YACRAADRHGLPLPRLQHLQQRLVAH 296 (305)
T ss_pred CccHHHHHHHHHHHHHhc-cCCCcHHHHHHHcCCceeehhhhh-----------HHHHHHHHcCCCCchHHHHHHHHHHH
Confidence 5 333333333211000 001112334556666666666655 79999999999999999999887766
Q ss_pred HHC
Q 018506 332 CEN 334 (355)
Q Consensus 332 ~~~ 334 (355)
..+
T Consensus 297 ~~~ 299 (305)
T PRK05708 297 LRA 299 (305)
T ss_pred HHh
Confidence 554
|
|
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.7e-16 Score=142.95 Aligned_cols=195 Identities=17% Similarity=0.226 Sum_probs=130.3
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCC----cEEEEeCChhHHHHHHhC--CCCCCCCHHHHhhcCCEEEEeCCCchHHHHHh
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGY----KMAVHDVNCNVMKMFSDM--GVPTKETPFEVAEASDVVITMLPSSSHVLDVY 119 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~----~V~v~dr~~~~~~~l~~~--g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl 119 (355)
|+|+|||+|+||.+++..|.++|+ +|++|+|++++.+.+.+. ++..+.++.++++++|+||+|+|. .++++++
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~p-~~~~~vl 79 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVKP-LDIYPLL 79 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecCH-HHHHHHH
Confidence 689999999999999999999984 799999999998887663 566677888888999999999984 5788888
Q ss_pred cCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEec--CCH
Q 018506 120 NGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVG--GSE 197 (355)
Q Consensus 120 ~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~g--g~~ 197 (355)
..+.+.+. ++++|++++++. ..+.+.+.++. . ..+++ | ..+.....|...++.| .++
T Consensus 80 ~~l~~~l~-----~~~~iis~~ag~--~~~~L~~~~~~------~----~~r~~--p--~~~~~~~~G~t~~~~g~~~~~ 138 (273)
T PRK07680 80 QKLAPHLT-----DEHCLVSITSPI--SVEQLETLVPC------Q----VARII--P--SITNRALSGASLFTFGSRCSE 138 (273)
T ss_pred HHHHhhcC-----CCCEEEEECCCC--CHHHHHHHcCC------C----EEEEC--C--ChHHHHhhccEEEeeCCCCCH
Confidence 76554442 356888888754 34556555431 0 12333 2 1233455677555555 466
Q ss_pred HHHHHHHHHHHHcCCCeEEeCCc-chHHHHHHHH--HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 018506 198 DAYQAAKPLFLSMGKNTIYCGGA-GNGAAAKICN--NLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS 266 (355)
Q Consensus 198 ~~~~~v~~ll~~~g~~~~~~g~~-g~a~~~Kl~~--n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~ 266 (355)
+.++.++++|+.+|. .+++.+. ..+. .-+.. -.+.+.++.++.++. .++.|+++++..+++....
T Consensus 139 ~~~~~~~~ll~~~G~-~~~i~e~~~~~~-~~l~gs~pa~~~~~~~al~~~~--~~~~Gl~~~~a~~~~~~~~ 206 (273)
T PRK07680 139 EDQQKLERLFSNIST-PLVIEEDITRVS-SDIVSCGPAFFSYLLQRFIDAA--VEETNISKEEATTLASEML 206 (273)
T ss_pred HHHHHHHHHHHcCCC-EEEEChHhcchh-hhhccchHHHHHHHHHHHHHHH--HHhcCCCHHHHHHHHHHHH
Confidence 788999999999995 4555441 1111 10111 112223333333332 2348999999988887653
|
|
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.2e-16 Score=145.93 Aligned_cols=260 Identities=15% Similarity=0.180 Sum_probs=174.5
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCC------------CCCCHHHHhhcCCEEEEeCCCch
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP------------TKETPFEVAEASDVVITMLPSSS 113 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~------------~~~s~~e~~~~aDiVi~~v~~~~ 113 (355)
|||.|+|+|.||+.++..|+++|++|+++.|++. ++++++.|.. ...+..+....+|+||+++++.
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa~- 78 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKAY- 78 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEeccc-
Confidence 7999999999999999999999999999999755 8888876532 1223334556899999999986
Q ss_pred HHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCC--CChHHHhcCceE-
Q 018506 114 HVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVS--GGVLAAEAGTLT- 190 (355)
Q Consensus 114 ~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~--g~~~~~~~g~~~- 190 (355)
++++++..+.+.+. +++.|+..-++. ...+.+.+..++..+. .| +....+-.. |.......|...
T Consensus 79 q~~~al~~l~~~~~-----~~t~vl~lqNG~-g~~e~l~~~~~~~~il--~G----~~~~~a~~~~~g~v~~~g~g~~~i 146 (307)
T COG1893 79 QLEEALPSLAPLLG-----PNTVVLFLQNGL-GHEEELRKILPKETVL--GG----VTTHGAVREGPGHVVHTGLGDTVI 146 (307)
T ss_pred cHHHHHHHhhhcCC-----CCcEEEEEeCCC-cHHHHHHHhCCcceEE--EE----EeeeeeEecCCceEEEecCCcEEE
Confidence 88898888777764 333455444444 3334666666542110 11 111111111 111111122322
Q ss_pred -EEecCCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHH---------------------HHHHHHHHHHHH
Q 018506 191 -FMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAV---------------------SMLGVSEALTLG 248 (355)
Q Consensus 191 -~~~gg~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~---------------------~~~~~~Ea~~la 248 (355)
.+.+++++..+.+.++|+..+..+.+..++-...|.|++.|...+. ....+.|...++
T Consensus 147 g~~~~~~~~~~~~i~~~~~~a~~~~~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~l~~~~~~E~~~v~ 226 (307)
T COG1893 147 GELRGGRDELVKALAELFKEAGLEVELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLENPEARALIRALVAEVVAVA 226 (307)
T ss_pred ccCCCCchHHHHHHHHHHHhCCCCeEEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhcChhHHHHHHHHHHHHHHHH
Confidence 1223455788899999999998888888899999999999976652 456778999999
Q ss_pred HHcC--CCHH---HHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHH
Q 018506 249 QSLG--ISAS---TLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQ 323 (355)
Q Consensus 249 ~~~G--i~~~---~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~ 323 (355)
.+.| ++.+ .+............ -++..++..+++.+-||..| ++++.|+++|+++|.++.
T Consensus 227 ~~~g~~~~~~~~~~v~~~~~~~~~~~~----sSM~qDl~~gr~tEid~i~G-----------~vv~~a~~~gi~~P~~~~ 291 (307)
T COG1893 227 RAEGVELPEEVVERVLAVIRATDAENY----SSMLQDLEKGRPTEIDAING-----------AVVRLAKKHGLATPVNDT 291 (307)
T ss_pred HhccCCCCHHHHHHHHHHHHhcccccC----chHHHHHHcCCcccHHHHhh-----------HHHHHHHHhCCCCcHHHH
Confidence 9999 4553 33444433321111 12234445555666666544 799999999999999999
Q ss_pred HHHHHHHHHHC
Q 018506 324 AQDIYAKLCEN 334 (355)
Q Consensus 324 ~~~~~~~~~~~ 334 (355)
++++++..+..
T Consensus 292 L~~lvk~~e~~ 302 (307)
T COG1893 292 LYALLKAKEAE 302 (307)
T ss_pred HHHHHHHHHHh
Confidence 99999987765
|
|
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.6e-16 Score=141.86 Aligned_cols=241 Identities=14% Similarity=0.112 Sum_probs=157.2
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC----cEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY----KMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVY 119 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~----~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl 119 (355)
+.|||+|||+|+||.+|+..|.+++. ++++++|++++. +.....++.++++++|+||+|+| ++++++++
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~D~Vilavk-p~~~~~vl 74 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT------PFVYLQSNEELAKTCDIIVLAVK-PDLAGKVL 74 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC------CeEEeCChHHHHHhCCEEEEEeC-HHHHHHHH
Confidence 45899999999999999999999872 499999987542 33445678888889999999998 56899999
Q ss_pred cCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecC---C
Q 018506 120 NGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG---S 196 (355)
Q Consensus 120 ~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg---~ 196 (355)
.++.+.+. ++.+|.++++++.+..+. .++.. .. .++ ..| +.+.....+. +.+... +
T Consensus 75 ~~i~~~l~-----~~~iIS~~aGi~~~~l~~---~~~~~----~~----vvr--~mP--n~p~~~g~g~-t~i~~~~~~~ 133 (260)
T PTZ00431 75 LEIKPYLG-----SKLLISICGGLNLKTLEE---MVGVE----AK----IVR--VMP--NTPSLVGQGS-LVFCANNNVD 133 (260)
T ss_pred HHHHhhcc-----CCEEEEEeCCccHHHHHH---HcCCC----Ce----EEE--ECC--CchhHhccee-EEEEeCCCCC
Confidence 87665442 335777777777655443 33210 00 011 122 1223333343 444432 5
Q ss_pred HHHHHHHHHHHHHcCCCeEEeCC---------cchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCHHHHHHHHHhcC
Q 018506 197 EDAYQAAKPLFLSMGKNTIYCGG---------AGNGAAAKICNNLTMAVSMLGVSEALTL-GQSLGISASTLTKILNSSS 266 (355)
Q Consensus 197 ~~~~~~v~~ll~~~g~~~~~~g~---------~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l-a~~~Gi~~~~~~~~~~~~~ 266 (355)
++..+.++.+|+.+|..++ +.+ .|+++++ +..+.|++.- +.+.|++.++..+++.+..
T Consensus 134 ~~~~~~v~~l~~~~G~~~~-v~E~~~d~~ta~~gsgPA~-----------~~~~~~al~~~~v~~Gl~~~~a~~l~~~~~ 201 (260)
T PTZ00431 134 STDKKKVIDIFSACGIIQE-IKEKDMDIATAISGCGPAY-----------VFLFIESLIDAGVKNGLNRDVSKNLVLQTI 201 (260)
T ss_pred HHHHHHHHHHHHhCCcEEE-EChHHcchhhhhcCCHHHH-----------HHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 6778999999999997543 322 3444444 3445566665 9999999999999988765
Q ss_pred CCcc-cccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCC
Q 018506 267 ARCW-SSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENG 335 (355)
Q Consensus 267 ~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g 335 (355)
..+. +.......|..+ .+...+||.+.. ..++..++.|+.--+.+++.+..+++.+.|
T Consensus 202 ~G~a~ll~~~~~~~~~l----~~~v~spgG~T~-------~gl~~le~~g~~~~~~~a~~aa~~r~~~l~ 260 (260)
T PTZ00431 202 LGSVHMVKASDQPVQQL----KDDVCSPGGITI-------VGLYTLEKHAFKYTVMDAVESACQKSKSMH 260 (260)
T ss_pred HHHHHHHHhcCCCHHHH----HHhCCCCChHHH-------HHHHHHHHCChHHHHHHHHHHHHHHHHhcC
Confidence 3221 111111112221 133445554332 578888899999999999999998887654
|
|
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.1e-15 Score=136.16 Aligned_cols=245 Identities=12% Similarity=0.066 Sum_probs=153.9
Q ss_pred CceEEEEcccHHhHHHHHHHHHCC----CcEEEEeCCh-hHHHHHHhC--CCCCCCCHHHHhhcCCEEEEeCCCchHHHH
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAG----YKMAVHDVNC-NVMKMFSDM--GVPTKETPFEVAEASDVVITMLPSSSHVLD 117 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G----~~V~v~dr~~-~~~~~l~~~--g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~ 117 (355)
|+||+|||+|+||.+++..|.++| ++|.+|+|++ ++.+.+... +...+.+..++++++|+||+|+| ++.+++
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavp-p~~~~~ 79 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVP-PLAVLP 79 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecC-HHHHHH
Confidence 578999999999999999999998 7899999864 445555442 23445778888899999999999 468888
Q ss_pred HhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEec--C
Q 018506 118 VYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVG--G 195 (355)
Q Consensus 118 vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~g--g 195 (355)
++..+.+.+. ++++||....+... ..+.+.++.. ... ..+++.| .....|...+..+ -
T Consensus 80 vl~~l~~~l~-----~~~~ivS~~aGi~~--~~l~~~~~~~----~vv----R~MPN~~-----~~~g~g~t~~~~~~~~ 139 (277)
T PRK06928 80 LLKDCAPVLT-----PDRHVVSIAAGVSL--DDLLEITPGL----QVS----RLIPSLT-----SAVGVGTSLVAHAETV 139 (277)
T ss_pred HHHHHHhhcC-----CCCEEEEECCCCCH--HHHHHHcCCC----CEE----EEeCccH-----HHHhhhcEEEecCCCC
Confidence 8877654442 34567777665433 3555554310 000 1233333 3334454333333 2
Q ss_pred CHHHHHHHHHHHHHcCCCeE--------EeCCcchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHc-CCCHHHHHHHHHhc
Q 018506 196 SEDAYQAAKPLFLSMGKNTI--------YCGGAGNGAAAKICNNLTMAVSMLGVSEALTL-GQSL-GISASTLTKILNSS 265 (355)
Q Consensus 196 ~~~~~~~v~~ll~~~g~~~~--------~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l-a~~~-Gi~~~~~~~~~~~~ 265 (355)
+++..+.++.+|+.+|..++ .+.-.|+++++ +..+.|++.- +.+. |+++++..+++.++
T Consensus 140 ~~~~~~~v~~l~~~~G~~~~v~E~~~d~~tal~gsgPA~-----------~~~~~~al~~a~~~~ggl~~~~a~~l~~~~ 208 (277)
T PRK06928 140 NEANKSRLEETLSHFSHVMTIREENMDIASNLTSSSPGF-----------IAAIFEEFAEAAVRNSSLSDEEAFQFLNFA 208 (277)
T ss_pred CHHHHHHHHHHHHhCCCEEEEchhhCceeeeeecCHHHH-----------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 56788999999999997543 22234777777 4456677776 7888 79999999988876
Q ss_pred CCCcc-cccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 018506 266 SARCW-SSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCE 333 (355)
Q Consensus 266 ~~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~ 333 (355)
...+. ........|..+ .++..+||.+.. ..++..++ |++--+.+++.+..++..+
T Consensus 209 ~~G~a~l~~~~~~~p~~l----~~~v~spgGtT~-------~gl~~le~-~~~~~~~~~~~~a~~r~~~ 265 (277)
T PRK06928 209 LAGTGKLLVEEDYTFSGT----IERVATKGGITA-------EGAEVIQA-QLPQFFDELLDRTQKKYAS 265 (277)
T ss_pred HHHHHHHHHccCCCHHHH----HHhCCCCChHHH-------HHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 43221 110111112222 123445554332 34555554 6666666666666666554
|
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.9e-15 Score=141.26 Aligned_cols=196 Identities=14% Similarity=0.185 Sum_probs=139.1
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCC----CCCCHHHHhhcCCEEEEeCCCchHHHHHhcC
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP----TKETPFEVAEASDVVITMLPSSSHVLDVYNG 121 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~----~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~ 121 (355)
++|+|||+|.||.+|+..|.++|++|.+|+++++..+.....+.. ..+++.++++++|+||+|+|.. .+.+++..
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~-~~~~vl~~ 79 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVD-ATAALLAE 79 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHH-HHHHHHHH
Confidence 479999999999999999999999999999988776554443332 2356778889999999999974 78888876
Q ss_pred CCcc-ccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEe-CCCCCCh--------HHHhcCceEE
Q 018506 122 PNGL-LQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGV--------LAAEAGTLTF 191 (355)
Q Consensus 122 ~~~~-l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~-~pv~g~~--------~~~~~g~~~~ 191 (355)
+.+. ++ ++.+|+|.++++....+.+.+.+.. ...|+. +|+.|+. .....+...+
T Consensus 80 l~~~~l~-----~~~ivtDv~SvK~~i~~~~~~~~~~-----------~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~i 143 (359)
T PRK06545 80 LADLELK-----PGVIVTDVGSVKGAILAEAEALLGD-----------LIRFVGGHPMAGSHKSGVAAARADLFENAPWV 143 (359)
T ss_pred HhhcCCC-----CCcEEEeCccccHHHHHHHHHhcCC-----------CCeEEeeCCcCcCchhhHHHhcHHHHCCCcEE
Confidence 5432 22 4579999999988776666554221 145666 6887753 2234565566
Q ss_pred Eec---CCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 018506 192 MVG---GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSS 265 (355)
Q Consensus 192 ~~g---g~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~ 265 (355)
++. .+++.++.++++++.+|..++++++......+.++......+ ++++ +...+.+.+....+...+
T Consensus 144 l~~~~~~~~~~~~~v~~l~~~lGa~~v~~~~~~HD~~~A~vshlPh~i-----a~al--~~~~~~~~~~~~~la~~g 213 (359)
T PRK06545 144 LTPDDHTDPDAVAELKDLLSGTGAKFVVLDAEEHDRAVALVSHLPHIL-----ASSL--AARLAGEHPLALRLAAGG 213 (359)
T ss_pred EecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHhHHHhHhccHHHHH-----HHHH--HHhhccCchHHHhhhccc
Confidence 664 478899999999999999888888766666665555543322 3333 555566666666665543
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.8e-16 Score=133.99 Aligned_cols=152 Identities=18% Similarity=0.268 Sum_probs=100.8
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC--------------------CCCCCCCHHHHhhcCCEE
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM--------------------GVPTKETPFEVAEASDVV 105 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~--------------------g~~~~~s~~e~~~~aDiV 105 (355)
|||+|||+|.+|.++|..|+++||+|++||.++++++.+++. +..++++..+++.++|++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~ 80 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV 80 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence 899999999999999999999999999999999999988763 234567888888999999
Q ss_pred EEeCCCch---------HHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCC
Q 018506 106 ITMLPSSS---------HVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAP 176 (355)
Q Consensus 106 i~~v~~~~---------~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p 176 (355)
|+|||+|. .+++++..+.+.+. ++++||..||..|.+++++...+-+. ..+...++++..+|
T Consensus 81 ~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~-----~~~lvV~~STvppGtt~~~~~~ile~----~~~~~~~f~la~~P 151 (185)
T PF03721_consen 81 FICVPTPSDEDGSPDLSYVESAIESIAPVLR-----PGDLVVIESTVPPGTTEELLKPILEK----RSGKKEDFHLAYSP 151 (185)
T ss_dssp EE----EBETTTSBETHHHHHHHHHHHHHHC-----SCEEEEESSSSSTTHHHHHHHHHHHH----HCCTTTCEEEEE--
T ss_pred EEecCCCccccCCccHHHHHHHHHHHHHHHh-----hcceEEEccEEEEeeehHhhhhhhhh----hcccccCCeEEECC
Confidence 99998773 45566665544543 46899999999999999665544321 12111347788888
Q ss_pred CC---CChHHHhcCceEEEecCCHHHH-HHHHHH
Q 018506 177 VS---GGVLAAEAGTLTFMVGGSEDAY-QAAKPL 206 (355)
Q Consensus 177 v~---g~~~~~~~g~~~~~~gg~~~~~-~~v~~l 206 (355)
.+ |...........++.|.+++.. +.+++|
T Consensus 152 Erl~~G~a~~d~~~~~rvV~G~~~~~~~~~~~~l 185 (185)
T PF03721_consen 152 ERLREGRAIEDFRNPPRVVGGCDDESAEERLKEL 185 (185)
T ss_dssp ----TTSHHHHHHSSSEEEEEESSHHHHHHHHHH
T ss_pred CccCCCCcchhccCCCEEEEeCCcHHHHHHHhcC
Confidence 76 6665556666677777655443 365543
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.9e-15 Score=136.88 Aligned_cols=173 Identities=14% Similarity=0.233 Sum_probs=125.4
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCC--cEEEEeCChhHHHHHHhCCC--CCCCCHHHHhhcCCEEEEeCCCchHHHHH
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMKMFSDMGV--PTKETPFEVAEASDVVITMLPSSSHVLDV 118 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~--~V~v~dr~~~~~~~l~~~g~--~~~~s~~e~~~~aDiVi~~v~~~~~~~~v 118 (355)
+..+||+|||+|.||..++..|.+.|+ +|++|||++++.+.+.+.|. ....++.++++++|+||+|+|.. ...++
T Consensus 4 ~~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~-~~~~v 82 (307)
T PRK07502 4 PLFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVG-ASGAV 82 (307)
T ss_pred cCCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHH-HHHHH
Confidence 455799999999999999999999995 89999999998888877664 34567778889999999999975 55666
Q ss_pred hcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEe-CCCCCChH--------HHhcCce
Q 018506 119 YNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGVL--------AAEAGTL 189 (355)
Q Consensus 119 l~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~-~pv~g~~~--------~~~~g~~ 189 (355)
+..+.+.++ ++.+|+|+++......+.+.+.++. +.+|+. .|+.|+.. ....|..
T Consensus 83 ~~~l~~~l~-----~~~iv~dvgs~k~~~~~~~~~~~~~-----------~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~ 146 (307)
T PRK07502 83 AAEIAPHLK-----PGAIVTDVGSVKASVIAAMAPHLPE-----------GVHFIPGHPLAGTEHSGPDAGFAELFENRW 146 (307)
T ss_pred HHHHHhhCC-----CCCEEEeCccchHHHHHHHHHhCCC-----------CCeEEeCCCCCCCcccchhhcCHHHHCCCe
Confidence 655433332 4568899988887666555444321 245565 48876431 1223444
Q ss_pred EEEe---cCCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHH
Q 018506 190 TFMV---GGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNL 232 (355)
Q Consensus 190 ~~~~---gg~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~ 232 (355)
.+++ +++++.++.++++++.+|.+++++++......+-++...
T Consensus 147 ~~l~~~~~~~~~~~~~~~~l~~~lG~~~~~~~~~~hD~~~A~~s~l 192 (307)
T PRK07502 147 CILTPPEGTDPAAVARLTAFWRALGARVEEMDPEHHDLVLAITSHL 192 (307)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHhHHHHHHhhH
Confidence 4444 467889999999999999999888876566555444444
|
|
| >COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.1e-15 Score=136.31 Aligned_cols=252 Identities=15% Similarity=0.199 Sum_probs=166.0
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH-----------hCC-------------CCCCCCHHHHh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS-----------DMG-------------VPTKETPFEVA 99 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~-----------~~g-------------~~~~~s~~e~~ 99 (355)
..+||+|||+|.||+.||..++..|++|+++|++++.++... +.| +..+++.. ++
T Consensus 2 ~i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l 80 (307)
T COG1250 2 EIKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-AL 80 (307)
T ss_pred CccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hh
Confidence 458999999999999999999998899999999977644322 111 33344444 67
Q ss_pred hcCCEEEEeCCCchHHHH-HhcCCCccccCCCCCCCeEE-EEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCC
Q 018506 100 EASDVVITMLPSSSHVLD-VYNGPNGLLQGGNSVRPQLL-IDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPV 177 (355)
Q Consensus 100 ~~aDiVi~~v~~~~~~~~-vl~~~~~~l~~~~~~~~~iv-i~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv 177 (355)
++||+||.+++.+..++. ++..+..+.+ ++.++ .|+|+.++.. +.+...+ .-++.+.||.++|.
T Consensus 81 ~~~DlVIEAv~E~levK~~vf~~l~~~~~-----~~aIlASNTSsl~it~---ia~~~~r------per~iG~HFfNP~~ 146 (307)
T COG1250 81 KDADLVIEAVVEDLELKKQVFAELEALAK-----PDAILASNTSSLSITE---LAEALKR------PERFIGLHFFNPVP 146 (307)
T ss_pred ccCCEEEEeccccHHHHHHHHHHHHhhcC-----CCcEEeeccCCCCHHH---HHHHhCC------chhEEEEeccCCCC
Confidence 899999999999988885 4444454443 23333 2444444443 4343321 11223589999887
Q ss_pred CCChHHHhcCceEEEecCCHHHHHHHHHHHHHcCCCeEEeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Q 018506 178 SGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISAS 256 (355)
Q Consensus 178 ~g~~~~~~~g~~~~~~gg~~~~~~~v~~ll~~~g~~~~~~g~-~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~ 256 (355)
.........|..+ ++++++.+.++...+++.++...+ +|. +.|.+. ...+.|++.+..+...+++
T Consensus 147 ~m~LVEvI~g~~T-----~~e~~~~~~~~~~~igK~~vv~~D~pGF------i~NRil---~~~~~eA~~l~~eGva~~e 212 (307)
T COG1250 147 LMPLVEVIRGEKT-----SDETVERVVEFAKKIGKTPVVVKDVPGF------IVNRLL---AALLNEAIRLLEEGVATPE 212 (307)
T ss_pred cceeEEEecCCCC-----CHHHHHHHHHHHHHcCCCCEeecCCCce------ehHhHH---HHHHHHHHHHHHhCCCCHH
Confidence 6665555556656 899999999999999987655555 432 345543 4456899999999889999
Q ss_pred HHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHH
Q 018506 257 TLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVG-----VDCPLTSQAQDIYAKL 331 (355)
Q Consensus 257 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g-----v~~pi~~~~~~~~~~~ 331 (355)
++..++..+.+.. + .|. . -.|+ .+++.+.+-+....+ ..+ .+.++++...+.-..+
T Consensus 213 ~ID~~~~~~~G~p-m----Gpf--~------l~D~---~GlD~~~~i~~~~~~---~~~~~~~~~~~~~~~~~v~~g~lG 273 (307)
T COG1250 213 EIDAAMRQGLGLP-M----GPF--E------LADL---IGLDVMLHIMKVLNE---TLGDDPYYRPPPLLRKLVEAGRLG 273 (307)
T ss_pred HHHHHHHhccCCC-c----cHH--H------HHHH---HhHHHHHHHHHHHHH---hcCCCccccccHHHHHHHhccccc
Confidence 9999998765432 1 010 0 0011 113333332233332 333 3457778888877888
Q ss_pred HHCCCCCCcHHH
Q 018506 332 CENGHDSKDFSC 343 (355)
Q Consensus 332 ~~~g~g~~d~~~ 343 (355)
.+.|.|..||..
T Consensus 274 ~Ksg~GfY~y~~ 285 (307)
T COG1250 274 RKSGKGFYDYRG 285 (307)
T ss_pred ccCCCcceeccc
Confidence 888999999975
|
|
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.2e-14 Score=129.55 Aligned_cols=158 Identities=20% Similarity=0.224 Sum_probs=113.3
Q ss_pred ceEEEEcccHH--------------------hHHHHHHHHHCCCcEEEEeCChhHH-----HHHHhCCCCCCCCHHHHhh
Q 018506 46 ESVGFIGLGNM--------------------GFRMASNLMKAGYKMAVHDVNCNVM-----KMFSDMGVPTKETPFEVAE 100 (355)
Q Consensus 46 mkIgiIG~G~m--------------------G~~ia~~L~~~G~~V~v~dr~~~~~-----~~l~~~g~~~~~s~~e~~~ 100 (355)
|||.|.|+|+- |.+||++|+++||+|++|||++++. +.+.+.|+..++++.++++
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa 80 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAK 80 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHh
Confidence 78889998873 8899999999999999999987655 4578889999999999999
Q ss_pred cCCEEEEeCCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHH-HhhchhhhccCCCCCceEEeCCCCC
Q 018506 101 ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAA-VSNCILKEKKDSWENPVMLDAPVSG 179 (355)
Q Consensus 101 ~aDiVi~~v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~-~~~~~~~~~~g~~~~~~~~~~pv~g 179 (355)
++|+||+|+|++.++++++.+ ++.. .++|++|||+||++|.....+.+. +.-.. +..| ...|.-+.+-|
T Consensus 81 ~ADVVIL~LPd~aaV~eVl~G---Laa~--L~~GaIVID~STIsP~t~~~~~e~~l~~~r--~d~~---v~s~HP~~vP~ 150 (341)
T TIGR01724 81 HGEIHVLFTPFGKGTFSIART---IIEH--VPENAVICNTCTVSPVVLYYSLEKILRLKR--TDVG---ISSMHPAAVPG 150 (341)
T ss_pred CCCEEEEecCCHHHHHHHHHH---HHhc--CCCCCEEEECCCCCHHHHHHHHHHHhhcCc--cccC---eeccCCCCCCC
Confidence 999999999999999998743 4443 236789999999999987776554 22100 1111 01122222222
Q ss_pred ChHHHhcCceEEEec--------CCHHHHHHHHHHHHHcCCCeEEe
Q 018506 180 GVLAAEAGTLTFMVG--------GSEDAYQAAKPLFLSMGKNTIYC 217 (355)
Q Consensus 180 ~~~~~~~g~~~~~~g--------g~~~~~~~v~~ll~~~g~~~~~~ 217 (355)
.+.+ ...++.| .++|..+++-++.+..++..+.+
T Consensus 151 ~~~~----~~~~~~~~~~~~~~~A~ee~i~~~~el~~~~~~~~~~~ 192 (341)
T TIGR01724 151 TPQH----GHYVIGGKPTAGKEMATEEQISKCVELAKSTGKKAYVV 192 (341)
T ss_pred CCCC----ceeeeccccccccccCCHHHHHHHHHHHHHhCCCeeec
Confidence 2211 1112221 37889999999999999887744
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.2e-15 Score=127.55 Aligned_cols=169 Identities=18% Similarity=0.221 Sum_probs=113.7
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeC-ChhHHHHHHh-CCC-CCCCCHHHHhhcCCEEEEeCCCchHHHHHhcC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDV-NCNVMKMFSD-MGV-PTKETPFEVAEASDVVITMLPSSSHVLDVYNG 121 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr-~~~~~~~l~~-~g~-~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~ 121 (355)
||+|+|+|.|++|+++|++|+++||+|++-+| .+++.+...+ .+. ....++.++++.+|+||++||- ..+.+++.+
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~-~a~~~v~~~ 79 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPF-EAIPDVLAE 79 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccH-HHHHhHHHH
Confidence 68999999999999999999999999998865 4555555444 232 2345888999999999999996 477787776
Q ss_pred CCccccCCCCCCCeEEEEcCCCC---------------HHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhc
Q 018506 122 PNGLLQGGNSVRPQLLIDSSTID---------------PQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEA 186 (355)
Q Consensus 122 ~~~~l~~~~~~~~~ivi~~st~~---------------~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~ 186 (355)
+...+ .+++|||+++.- -..++.+.+.++...+... ++-+.+...........
T Consensus 80 l~~~~------~~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~akVVkA------Fn~i~a~~l~~~~~~~~ 147 (211)
T COG2085 80 LRDAL------GGKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGAKVVKA------FNTIPAAVLADLAKPGG 147 (211)
T ss_pred HHHHh------CCeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCcchhhh------hcccCHHHhccCCCcCC
Confidence 54433 568999998851 1123444555543221111 22222222211111112
Q ss_pred CceEEEecCCHHHHHHHHHHHHHcCCCeEEeCCcchHHHH
Q 018506 187 GTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAA 226 (355)
Q Consensus 187 g~~~~~~gg~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~ 226 (355)
....+++|.|.++.+.+.++.+.+|...+..|++..+..+
T Consensus 148 ~~~v~vagDD~~Ak~~v~~L~~~iG~~~ld~G~L~~a~~l 187 (211)
T COG2085 148 RRDVLVAGDDAEAKAVVAELAEDIGFRPLDAGPLENARIL 187 (211)
T ss_pred ceeEEEecCcHHHHHHHHHHHHhcCcceeecccccccccc
Confidence 3335666778889999999999999999999986555444
|
|
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-14 Score=130.85 Aligned_cols=197 Identities=16% Similarity=0.216 Sum_probs=129.1
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC---c-EEEEeC-ChhHHHHHHh-CCCCCCCCHHHHhhcCCEEEEeCCCchHHHH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY---K-MAVHDV-NCNVMKMFSD-MGVPTKETPFEVAEASDVVITMLPSSSHVLD 117 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~---~-V~v~dr-~~~~~~~l~~-~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~ 117 (355)
..+||+|||+|+||.+++..|.++|+ + +++++| ++++.+.+.+ .++..+.+..++++++|+||+++|. +..++
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~-~~~~~ 81 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPP-SAHEE 81 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCH-HHHHH
Confidence 45789999999999999999998873 3 777887 5778887766 4666677888999999999999996 47788
Q ss_pred HhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEec--C
Q 018506 118 VYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVG--G 195 (355)
Q Consensus 118 vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~g--g 195 (355)
++..+.+.+ ++++||+++.+... ..+.+.++. + .......|.+ +.....+...+..+ .
T Consensus 82 v~~~l~~~~------~~~~vis~~~gi~~--~~l~~~~~~-------~---~~v~r~~Pn~--a~~v~~g~~~~~~~~~~ 141 (245)
T PRK07634 82 LLAELSPLL------SNQLVVTVAAGIGP--SYLEERLPK-------G---TPVAWIMPNT--AAEIGKSISLYTMGQSV 141 (245)
T ss_pred HHHHHHhhc------cCCEEEEECCCCCH--HHHHHHcCC-------C---CeEEEECCcH--HHHHhcCCeEEeeCCCC
Confidence 887654433 23577777666543 245555431 0 0122345632 23344454343333 5
Q ss_pred CHHHHHHHHHHHHHcCCCeEEeCCc--chHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHHhcC
Q 018506 196 SEDAYQAAKPLFLSMGKNTIYCGGA--GNGAAAKICNNLTMAVSMLGVSEALT-LGQSLGISASTLTKILNSSS 266 (355)
Q Consensus 196 ~~~~~~~v~~ll~~~g~~~~~~g~~--g~a~~~Kl~~n~~~~~~~~~~~Ea~~-la~~~Gi~~~~~~~~~~~~~ 266 (355)
+++..+.++++|+.+|..++ +.+. -...+.--... .++..+.|++. .+.+.|+++++..+++....
T Consensus 142 ~~~~~~~v~~lf~~~G~~~~-~~e~~~~~~~a~~gs~p----a~~~~~~~a~~~~~~~~Gl~~~~a~~~~~~~~ 210 (245)
T PRK07634 142 NETHKETLQLILKGIGTSQL-CTEEEVHQLTAVTGSAP----AFLYYFAESLIEATKSYGVDEETAKHLVIQMI 210 (245)
T ss_pred CHHHHHHHHHHHHhCCCEEE-ECHHHcchHHhhhcchH----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 78889999999999998664 4331 11111100000 11233445444 38999999999988887643
|
|
| >PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.4e-15 Score=138.62 Aligned_cols=249 Identities=12% Similarity=0.096 Sum_probs=155.2
Q ss_pred HhHHHHHHHHHCCCcEEEEeCChhH-------HHH-----------HHhCC-------------CCCCCC--HHHHhhcC
Q 018506 56 MGFRMASNLMKAGYKMAVHDVNCNV-------MKM-----------FSDMG-------------VPTKET--PFEVAEAS 102 (355)
Q Consensus 56 mG~~ia~~L~~~G~~V~v~dr~~~~-------~~~-----------l~~~g-------------~~~~~s--~~e~~~~a 102 (355)
||..||..++.+|++|++||++++. ++. +.+.| +..+++ +.+++++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 8999999999999999999999842 111 11112 233333 66888999
Q ss_pred CEEEEeCCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChH
Q 018506 103 DVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVL 182 (355)
Q Consensus 103 DiVi~~v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~ 182 (355)
|+||.|+|++.+++..++.. +.+. ..+++++ +||+++....++.+.+.. ..+..+.||+++|......
T Consensus 81 D~ViEav~E~~~~K~~~f~~--l~~~--~~~~~il--aSntS~~~~~~la~~~~~------p~r~~g~Hf~~Pp~~~~lv 148 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALRW--LGRH--VDADAII--ASTTSTFLVTDLQRHVAH------PERFLNAHWLNPAYLMPLV 148 (314)
T ss_pred CEEEECCcCCHHHHHHHHHH--HHhh--CCCCcEE--EEccccCCHHHHHhhcCC------cccEEEEecCCccccCceE
Confidence 99999999999999876653 2222 1244455 566665566677776532 1122348999998432222
Q ss_pred HHhcCceEEEecCCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 018506 183 AAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKIL 262 (355)
Q Consensus 183 ~~~~g~~~~~~gg~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~ 262 (355)
....+. +.++++++.++++++.+|+.++++++.+ +. +.|. .....++|++.++++.+++++++.+++
T Consensus 149 EVv~g~-----~t~~e~~~~~~~ll~~lGk~~v~v~d~~-Gf----i~nr---i~~~~l~EAl~l~e~g~~~~e~iD~a~ 215 (314)
T PRK08269 149 EVSPSD-----ATDPAVVDRLAALLERIGKVPVVCGPSP-GY----IVPR---IQALAMNEAARMVEEGVASAEDIDKAI 215 (314)
T ss_pred EEeCCC-----CCCHHHHHHHHHHHHHcCCcEEEecCCC-Cc----chHH---HHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 211122 3489999999999999999999999853 32 2233 455668999999999999999999999
Q ss_pred HhcCCCcccccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHH-hCCCChHHHHHHHHHHHHHHCCCCCCcH
Q 018506 263 NSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKE-VGVDCPLTSQAQDIYAKLCENGHDSKDF 341 (355)
Q Consensus 263 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~-~gv~~pi~~~~~~~~~~~~~~g~g~~d~ 341 (355)
..+.+..+. ...|. .+....+++....-+..+.+...+ .--+.|+++...+--..+.+.|.|..||
T Consensus 216 ~~g~G~~~~--~~Gpf-----------~~~D~~Gld~~~~~~~~l~~~~~~~~~~p~~~l~~~v~~g~~G~ksG~GfY~y 282 (314)
T PRK08269 216 RTGFGLRFA--VLGLL-----------EFIDWGGCDILYYASRYLAGEIGPDRFAPPAIVVRNMEEGRDGLRTGAGFYDY 282 (314)
T ss_pred HhCCCCCcc--CcCHH-----------HHHHhhhHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHCCCCcccCCCcceeC
Confidence 876543211 00110 000011222222222222221111 1123466666666666677888899888
Q ss_pred H
Q 018506 342 S 342 (355)
Q Consensus 342 ~ 342 (355)
.
T Consensus 283 ~ 283 (314)
T PRK08269 283 A 283 (314)
T ss_pred C
Confidence 4
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.5e-15 Score=130.75 Aligned_cols=165 Identities=21% Similarity=0.258 Sum_probs=112.5
Q ss_pred ceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC--------CCC---CCCCHHHHhhcCCEEEEeCCCch
Q 018506 46 ESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM--------GVP---TKETPFEVAEASDVVITMLPSSS 113 (355)
Q Consensus 46 mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~--------g~~---~~~s~~e~~~~aDiVi~~v~~~~ 113 (355)
|||+||| +|+||++++..|+++||+|++|+|++++++.+.+. +.. ...+..++++++|+||+|+|. +
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~-~ 79 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPW-D 79 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCH-H
Confidence 7899997 89999999999999999999999999988776542 221 124667888999999999996 4
Q ss_pred HHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHH---------------HHHHHHHHhh-chhhhccCCCCCceEEeCC-
Q 018506 114 HVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQT---------------SRNISAAVSN-CILKEKKDSWENPVMLDAP- 176 (355)
Q Consensus 114 ~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~---------------~~~l~~~~~~-~~~~~~~g~~~~~~~~~~p- 176 (355)
.+.+++..+.+.+ ++++||++++..+.. .+.+.+.++. ..+. ..|.+.|
T Consensus 80 ~~~~~l~~l~~~l------~~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~~~VV--------ka~~~~~a 145 (219)
T TIGR01915 80 HVLKTLESLRDEL------SGKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPETSRVV--------AAFHNLSA 145 (219)
T ss_pred HHHHHHHHHHHhc------cCCEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCCCCeEe--------eccccCCH
Confidence 7788776543333 346899998775431 1334444431 1000 1122222
Q ss_pred -CCCChHHHhcCceEEEecCCHHHHHHHHHHHHHc-CCCeEEeCCcchHHHH
Q 018506 177 -VSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSM-GKNTIYCGGAGNGAAA 226 (355)
Q Consensus 177 -v~g~~~~~~~g~~~~~~gg~~~~~~~v~~ll~~~-g~~~~~~g~~g~a~~~ 226 (355)
+..+. ....+...+++|.|+++.+.+..|.+.+ |..+++.|++..+...
T Consensus 146 ~~~~~~-~~~~~~~~~v~Gdd~~ak~~v~~L~~~~~G~~~vd~G~l~~a~~~ 196 (219)
T TIGR01915 146 VLLQDV-DDEVDCDVLVCGDDEEAKEVVAELAGRIDGLRALDAGPLENAAIV 196 (219)
T ss_pred HHhcCC-CCCCCCCEEEECCCHHHHHHHHHHHHhcCCCCcccCCchhhHHHH
Confidence 12221 1122344567777788999999999999 9999999987555444
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-14 Score=148.27 Aligned_cols=254 Identities=18% Similarity=0.096 Sum_probs=156.4
Q ss_pred CCCceEEEEcccHHhHHHHHHHH-HCCCcEEEEeCChhHHHHHH-----------hC-------------CCCCCCCHHH
Q 018506 43 CQFESVGFIGLGNMGFRMASNLM-KAGYKMAVHDVNCNVMKMFS-----------DM-------------GVPTKETPFE 97 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~-~~G~~V~v~dr~~~~~~~l~-----------~~-------------g~~~~~s~~e 97 (355)
....||+|||+|.||..||..++ .+|++|++||++++.++... +. .+..+++. +
T Consensus 302 ~~i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~ 380 (699)
T TIGR02440 302 AKIKKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-R 380 (699)
T ss_pred ccccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-H
Confidence 45578999999999999999998 58999999999988654321 11 23345555 4
Q ss_pred HhhcCCEEEEeCCCchHHHH-HhcCCCccccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeC
Q 018506 98 VAEASDVVITMLPSSSHVLD-VYNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 175 (355)
Q Consensus 98 ~~~~aDiVi~~v~~~~~~~~-vl~~~~~~l~~~~~~~~~ivi-~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~ 175 (355)
.+++||+||-++|+..+++. ++.++..++. ++.++. ++|+.++. ++.+.+.. ..++-+.||.++
T Consensus 381 ~~~~adlViEav~E~l~~K~~v~~~l~~~~~-----~~~ilasnTS~l~i~---~la~~~~~------p~r~~g~HffnP 446 (699)
T TIGR02440 381 GFKDVDIVIEAVFEDLALKHQMVKDIEQECA-----AHTIFASNTSSLPIG---QIAAAASR------PENVIGLHYFSP 446 (699)
T ss_pred HhccCCEEEEeccccHHHHHHHHHHHHhhCC-----CCcEEEeCCCCCCHH---HHHHhcCC------cccEEEEecCCc
Confidence 67899999999999988875 4544444442 334443 33333333 34444421 222334788887
Q ss_pred CCCCChHHHhcCceEEEecCCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 018506 176 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISA 255 (355)
Q Consensus 176 pv~g~~~~~~~g~~~~~~gg~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~ 255 (355)
|..........+..+ ++++++.+..+++.+|+.++.+.+. .| .+.|.+.. ..+.|++.+.+ .|+++
T Consensus 447 ~~~~~lVEvv~g~~T-----~~~~~~~~~~~~~~~gk~pv~v~d~-pG----fi~nRl~~---~~~~Ea~~l~~-~G~~~ 512 (699)
T TIGR02440 447 VEKMPLVEVIPHAGT-----SEQTIATTVALAKKQGKTPIVVADK-AG----FYVNRILA---PYMNEAARLLL-EGEPV 512 (699)
T ss_pred cccCceEEEeCCCCC-----CHHHHHHHHHHHHHcCCeEEEEccc-cc----hHHHHHHH---HHHHHHHHHHH-CCCCH
Confidence 765554444444444 8999999999999999999988762 22 24455443 45689988876 56899
Q ss_pred HHHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCC
Q 018506 256 STLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENG 335 (355)
Q Consensus 256 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g 335 (355)
+++..++. +.+. . ..|. .+....+++...+-...+.+...+.-.+.++++...+.-+.+.+.|
T Consensus 513 ~dID~a~~-~~G~--p---~GPf-----------~l~D~vGld~~~~i~~~l~~~~~~~~~~~~~l~~~v~~G~lG~ksg 575 (699)
T TIGR02440 513 EHIDKALV-KFGF--P---VGPI-----------TLLDEVGIDVGAKISPILEAELGERFKAPAVFDKLLSDDRKGRKNG 575 (699)
T ss_pred HHHHHHHH-HcCC--C---cCHH-----------HHHHHhchHHHHHHHHHHHHhcCCCCCCcHHHHHHHHCCCCcccCC
Confidence 99988884 3221 0 0110 0001122333333223222222221233455665555555666777
Q ss_pred CCCCcHH
Q 018506 336 HDSKDFS 342 (355)
Q Consensus 336 ~g~~d~~ 342 (355)
.|..||.
T Consensus 576 ~GfY~y~ 582 (699)
T TIGR02440 576 KGFYLYG 582 (699)
T ss_pred cEEEeCC
Confidence 7877775
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.60 E-value=1e-13 Score=128.01 Aligned_cols=170 Identities=16% Similarity=0.185 Sum_probs=121.6
Q ss_pred CCCCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHh-hcCCEEEEeCCCchHHHHH
Q 018506 40 VPSCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVA-EASDVVITMLPSSSHVLDV 118 (355)
Q Consensus 40 ~~~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~-~~aDiVi~~v~~~~~~~~v 118 (355)
..++..|+|+|||+|.||..++..|.+.|++|++|++++.. +...+.|+....+..+++ .++|+||+|+|. ..+.++
T Consensus 31 ~~~~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~~~gv~~~~~~~e~~~~~aDvVilavp~-~~~~~v 108 (304)
T PLN02256 31 LEKSRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIAAELGVSFFRDPDDFCEEHPDVVLLCTSI-LSTEAV 108 (304)
T ss_pred hccCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHHHHcCCeeeCCHHHHhhCCCCEEEEecCH-HHHHHH
Confidence 33457789999999999999999999999999999998643 434456776677888876 479999999996 477888
Q ss_pred hcCC-CccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCc-eEEeCCCCCChHH--HhcCceEEEec
Q 018506 119 YNGP-NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENP-VMLDAPVSGGVLA--AEAGTLTFMVG 194 (355)
Q Consensus 119 l~~~-~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~-~~~~~pv~g~~~~--~~~g~~~~~~g 194 (355)
+..+ .+.+ .++++|+|.++++....+.+.+.++. +. .+-.+|++|.... ...+...++..
T Consensus 109 l~~l~~~~l-----~~~~iviDv~SvK~~~~~~~~~~l~~-----------~~~~V~~HPmaG~e~~~~~~~~~~~~~~~ 172 (304)
T PLN02256 109 LRSLPLQRL-----KRSTLFVDVLSVKEFPKNLLLQVLPE-----------EFDILCTHPMFGPESGKGGWAGLPFVYDK 172 (304)
T ss_pred HHhhhhhcc-----CCCCEEEecCCchHHHHHHHHHhCCC-----------CCeEEecCCCCCCCCCccccCCCeEEEec
Confidence 8765 2223 24579999999876666666665431 12 2334677665432 23344333332
Q ss_pred -------CCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHH
Q 018506 195 -------GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAK 227 (355)
Q Consensus 195 -------g~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~K 227 (355)
.+++..+.++++++.+|.+++.+.+......+-
T Consensus 173 ~~i~~~~~~~~~~~~l~~l~~~lGa~v~~~~~eeHD~~vA 212 (304)
T PLN02256 173 VRIGDEGEREARCERFLDIFEEEGCRMVEMSCEEHDRYAA 212 (304)
T ss_pred ceecCCCCCHHHHHHHHHHHHHCCCEEEEeCHHHHhHHHH
Confidence 267889999999999999999888755555553
|
|
| >KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.1e-14 Score=123.65 Aligned_cols=255 Identities=14% Similarity=0.161 Sum_probs=185.1
Q ss_pred CceEEEEcccHHhHHHHHHHHHCC--CcEEEEeCChhHHHHHHhC-------------------CCCCCCCHHHHhhcCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAG--YKMAVHDVNCNVMKMFSDM-------------------GVPTKETPFEVAEASD 103 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G--~~V~v~dr~~~~~~~l~~~-------------------g~~~~~s~~e~~~~aD 103 (355)
|+||+.||+|.+|.+....++..- .+|+++|.+..++.+.+.. +..+.++.+.+++.+|
T Consensus 1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~ead 80 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKEAD 80 (481)
T ss_pred CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhhhcc
Confidence 579999999999999988887653 3688999999887766542 3445788999999999
Q ss_pred EEEEeCCCch--------------HHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCC
Q 018506 104 VVITMLPSSS--------------HVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWEN 169 (355)
Q Consensus 104 iVi~~v~~~~--------------~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~ 169 (355)
+||+.|.+|. ..++...-+.... ...+|++.-||++...++.+...+... ..|. .
T Consensus 81 lvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s-----~~~kivvekstvpv~aaesi~~il~~n----~~~i--~ 149 (481)
T KOG2666|consen 81 LVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVS-----VSDKIVVEKSTVPVKAAESIEKILNHN----SKGI--K 149 (481)
T ss_pred eEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhc-----cCCeEEEeeccccchHHHHHHHHHhcC----CCCc--e
Confidence 9999997763 2222222211121 245799999999999999998887531 1221 2
Q ss_pred ceEEeCCCC---CChHHHhcCceEEEecCC--H---HHHHHHHHHHHHcCCC-eEEeCCcchHHHHHHHHHHHHHHHHHH
Q 018506 170 PVMLDAPVS---GGVLAAEAGTLTFMVGGS--E---DAYQAAKPLFLSMGKN-TIYCGGAGNGAAAKICNNLTMAVSMLG 240 (355)
Q Consensus 170 ~~~~~~pv~---g~~~~~~~g~~~~~~gg~--~---~~~~~v~~ll~~~g~~-~~~~g~~g~a~~~Kl~~n~~~~~~~~~ 240 (355)
+.+++.|.+ |.......+.-.+++||+ + .+.+.+..+++++-.+ -+.+-..-+++..||+.|.+.+--+..
T Consensus 150 fqilsnpeflaegtaikdl~npdrvligg~etpeg~~av~~l~~vyehwvp~~~iittntwsselsklaanaflaqriss 229 (481)
T KOG2666|consen 150 FQILSNPEFLAEGTAIKDLFNPDRVLIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANAFLAQRISS 229 (481)
T ss_pred eEeccChHHhcccchhhhhcCCceEEECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHHHHHHHHhh
Confidence 567888876 555555556667888874 3 3566777788887543 344555679999999999999999999
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCC--C
Q 018506 241 VSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVD--C 318 (355)
Q Consensus 241 ~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~--~ 318 (355)
++-+.++|++.|.|..++..++... +.... .++ +-+-||+..+..||+-.++..++-+|+| .
T Consensus 230 ins~salceatgadv~eva~avg~d---~rig~------kfl-------~asvgfggscfqkdilnlvyice~lnlpeva 293 (481)
T KOG2666|consen 230 INSMSALCEATGADVSEVAYAVGTD---SRIGS------KFL-------NASVGFGGSCFQKDILNLVYICECLNLPEVA 293 (481)
T ss_pred hHHHHHHHHhcCCCHHHHHHHhccc---ccccH------HHh-------hcccCcCchhHHHHHHHHHHHHhcCCChHHH
Confidence 9999999999999999998887642 11111 111 2345899999999999999999999988 2
Q ss_pred hHHHHHHH
Q 018506 319 PLTSQAQD 326 (355)
Q Consensus 319 pi~~~~~~ 326 (355)
...+.+.+
T Consensus 294 ~ywqqvi~ 301 (481)
T KOG2666|consen 294 EYWQQVIK 301 (481)
T ss_pred HHHHHHhh
Confidence 34444443
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=3e-14 Score=146.02 Aligned_cols=195 Identities=16% Similarity=0.183 Sum_probs=133.6
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH-----------hC-------------CCCCCCCHHHH
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS-----------DM-------------GVPTKETPFEV 98 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~-----------~~-------------g~~~~~s~~e~ 98 (355)
....||+|||+|.||..||..++.+||+|++||++++.++... +. .+..+++. +.
T Consensus 311 ~~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 389 (715)
T PRK11730 311 KPVKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AG 389 (715)
T ss_pred cccceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HH
Confidence 3457899999999999999999999999999999998764321 11 13344555 45
Q ss_pred hhcCCEEEEeCCCchHHHH-HhcCCCccccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCC
Q 018506 99 AEASDVVITMLPSSSHVLD-VYNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAP 176 (355)
Q Consensus 99 ~~~aDiVi~~v~~~~~~~~-vl~~~~~~l~~~~~~~~~ivi-~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p 176 (355)
+++||+||-++|....++. ++.++..++. ++.++. |+|+.++. .+.+.+.. ..++.+.||.++|
T Consensus 390 ~~~aDlViEav~E~l~~K~~vf~~l~~~~~-----~~~ilasNTSsl~i~---~la~~~~~------p~r~~g~Hff~P~ 455 (715)
T PRK11730 390 FERVDVVVEAVVENPKVKAAVLAEVEQKVR-----EDTILASNTSTISIS---LLAKALKR------PENFCGMHFFNPV 455 (715)
T ss_pred hcCCCEEEecccCcHHHHHHHHHHHHhhCC-----CCcEEEEcCCCCCHH---HHHhhcCC------CccEEEEecCCcc
Confidence 6899999999999888875 4444444442 334443 33333333 34444421 2223347888876
Q ss_pred CCCChHHHhcCceEEEecCCHHHHHHHHHHHHHcCCCeEEeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 018506 177 VSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISA 255 (355)
Q Consensus 177 v~g~~~~~~~g~~~~~~gg~~~~~~~v~~ll~~~g~~~~~~g~-~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~ 255 (355)
..........+.-+ ++++++.+..++..+|+.++.+.+ +| .+.|.+... .++|++.+.++ |.++
T Consensus 456 ~~~~lVEvv~g~~T-----~~~~~~~~~~~~~~lgk~pv~v~d~pG------fv~nRi~~~---~~~ea~~lv~~-Ga~~ 520 (715)
T PRK11730 456 HRMPLVEVIRGEKT-----SDETIATVVAYASKMGKTPIVVNDCPG------FFVNRVLFP---YFAGFSQLLRD-GADF 520 (715)
T ss_pred cccceEEeeCCCCC-----CHHHHHHHHHHHHHhCCceEEecCcCc------hhHHHHHHH---HHHHHHHHHHc-CCCH
Confidence 54444433344434 899999999999999999998876 33 244665443 46899988775 4999
Q ss_pred HHHHHHHHhcCC
Q 018506 256 STLTKILNSSSA 267 (355)
Q Consensus 256 ~~~~~~~~~~~~ 267 (355)
+++..++..+.+
T Consensus 521 e~ID~a~~~~~G 532 (715)
T PRK11730 521 RQIDKVMEKQFG 532 (715)
T ss_pred HHHHHHHHhhCC
Confidence 999998876543
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.8e-13 Score=138.70 Aligned_cols=166 Identities=14% Similarity=0.144 Sum_probs=116.2
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhh-cCCEEEEeCCCchHHHHHhcC
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAE-ASDVVITMLPSSSHVLDVYNG 121 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~-~aDiVi~~v~~~~~~~~vl~~ 121 (355)
.+.|||||||+|.||..+|+.|.+.|++|++|||+... +...+.|+....+.++++. .+|+||+|+|. ..+.+++..
T Consensus 367 ~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~~~Gv~~~~~~~el~~~~aDvVILavP~-~~~~~vi~~ 444 (667)
T PLN02712 367 GSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQKLGVSYFSDADDLCEEHPEVILLCTSI-LSTEKVLKS 444 (667)
T ss_pred CCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHHHcCCeEeCCHHHHHhcCCCEEEECCCh-HHHHHHHHH
Confidence 35689999999999999999999999999999998653 4455567766778888775 58999999995 578887776
Q ss_pred CCc-cccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEE-eCCCCCChHHH--hcCceE----EEe
Q 018506 122 PNG-LLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML-DAPVSGGVLAA--EAGTLT----FMV 193 (355)
Q Consensus 122 ~~~-~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~-~~pv~g~~~~~--~~g~~~----~~~ 193 (355)
+.. .+ .++++|+|+++++....+.+.+.++. +..|+ .+|++|..... ...... .++
T Consensus 445 l~~~~l-----k~g~ivvDv~SvK~~~~~~~~~~l~~-----------~~~~v~~HPm~G~e~~~~G~~~~~~lf~~~~v 508 (667)
T PLN02712 445 LPFQRL-----KRSTLFVDVLSVKEFPRNLFLQHLPQ-----------DFDILCTHPMFGPESGKNGWNNLAFVFDKVRI 508 (667)
T ss_pred HHHhcC-----CCCcEEEECCCccHHHHHHHHHhccC-----------CCceEeeCCCCCccccccchhhhhhhccCcEe
Confidence 532 12 25679999999985555555554431 14456 78888766431 111111 233
Q ss_pred cCCHH---HHHHHHHHHHHcCCCeEEeCCcchHHHH
Q 018506 194 GGSED---AYQAAKPLFLSMGKNTIYCGGAGNGAAA 226 (355)
Q Consensus 194 gg~~~---~~~~v~~ll~~~g~~~~~~g~~g~a~~~ 226 (355)
+++.+ ..+.+.++++.+|.+++.+.+......+
T Consensus 509 ~~~~~~~~~~~~l~~l~~~lGa~vv~ms~eeHD~~~ 544 (667)
T PLN02712 509 GSDDRRVSRCDSFLDIFAREGCRMVEMSCAEHDWHA 544 (667)
T ss_pred CCCcchHHHHHHHHHHHHHcCCEEEEeCHHHHHHHH
Confidence 44443 4455669999999999888875555443
|
|
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.5e-14 Score=145.47 Aligned_cols=253 Identities=16% Similarity=0.085 Sum_probs=156.3
Q ss_pred CCCceEEEEcccHHhHHHHHHHH-HCCCcEEEEeCChhHHHHHH-----------hC-------------CCCCCCCHHH
Q 018506 43 CQFESVGFIGLGNMGFRMASNLM-KAGYKMAVHDVNCNVMKMFS-----------DM-------------GVPTKETPFE 97 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~-~~G~~V~v~dr~~~~~~~l~-----------~~-------------g~~~~~s~~e 97 (355)
....||+|||+|.||..||..++ .+|++|++||++++.++... +. .+..+++. +
T Consensus 307 ~~i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~ 385 (708)
T PRK11154 307 RPVNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-R 385 (708)
T ss_pred CcccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-H
Confidence 45678999999999999999999 88999999999988654421 11 13344555 5
Q ss_pred HhhcCCEEEEeCCCchHHHH-HhcCCCccccCCCCCCCeEEEE-cCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeC
Q 018506 98 VAEASDVVITMLPSSSHVLD-VYNGPNGLLQGGNSVRPQLLID-SSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 175 (355)
Q Consensus 98 ~~~~aDiVi~~v~~~~~~~~-vl~~~~~~l~~~~~~~~~ivi~-~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~ 175 (355)
.+++||+||-+++++..++. ++..++..++ ++.++.. +|+.++. .+.+.+.. ..++-+.||.++
T Consensus 386 ~~~~aDlViEav~E~~~~K~~v~~~le~~~~-----~~~ilasnTS~l~i~---~la~~~~~------p~r~ig~Hff~P 451 (708)
T PRK11154 386 GFKHADVVIEAVFEDLALKQQMVAEVEQNCA-----PHTIFASNTSSLPIG---QIAAAAAR------PEQVIGLHYFSP 451 (708)
T ss_pred HhccCCEEeecccccHHHHHHHHHHHHhhCC-----CCcEEEECCCCCCHH---HHHHhcCc------ccceEEEecCCc
Confidence 67899999999999888875 4444444442 3444433 3333333 34444321 222334788877
Q ss_pred CCCCChHHHhcCceEEEecCCHHHHHHHHHHHHHcCCCeEEeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 018506 176 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGIS 254 (355)
Q Consensus 176 pv~g~~~~~~~g~~~~~~gg~~~~~~~v~~ll~~~g~~~~~~g~-~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~ 254 (355)
|..........+.-+ ++++++.+..++..+|+.++.+.+ +| .+.|.+. ...++|++.+.++ |++
T Consensus 452 ~~~~~lVEvv~g~~T-----s~~~~~~~~~~~~~~gk~pv~v~d~pG------fi~nRl~---~~~~~EA~~lv~e-Gv~ 516 (708)
T PRK11154 452 VEKMPLVEVIPHAKT-----SAETIATTVALAKKQGKTPIVVRDGAG------FYVNRIL---APYINEAARLLLE-GEP 516 (708)
T ss_pred cccCceEEEECCCCC-----CHHHHHHHHHHHHHcCCceEEEeccCc------HHHHHHH---HHHHHHHHHHHHc-CCC
Confidence 755444444344434 899999999999999999888866 32 2346544 3446899988776 789
Q ss_pred HHHHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHC
Q 018506 255 ASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCEN 334 (355)
Q Consensus 255 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~ 334 (355)
++++..++. +.+. . ..|. .+....+++...+-+....+...+.--+.++++...+--+.+.+.
T Consensus 517 ~~dID~a~~-~~G~--p---~GPf-----------~~~D~~Gld~~~~i~~~l~~~~~~~~~~~~~l~~~v~~g~~G~k~ 579 (708)
T PRK11154 517 IEHIDAALV-KFGF--P---VGPI-----------TLLDEVGIDVGTKIIPILEAALGERFSAPAAFDKLLNDDRKGRKN 579 (708)
T ss_pred HHHHHHHHH-HcCC--C---CCHH-----------HHHHHhhhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHCCCCcccC
Confidence 999888875 3221 0 0110 000112233333333333332222122345555555555556777
Q ss_pred CCCCCcHH
Q 018506 335 GHDSKDFS 342 (355)
Q Consensus 335 g~g~~d~~ 342 (355)
|.|..||.
T Consensus 580 g~GfY~y~ 587 (708)
T PRK11154 580 GRGFYLYG 587 (708)
T ss_pred CceEEECC
Confidence 88888875
|
|
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.9e-14 Score=144.53 Aligned_cols=192 Identities=17% Similarity=0.169 Sum_probs=133.0
Q ss_pred CCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh-----------C-------------CCCCCCCHHH
Q 018506 42 SCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----------M-------------GVPTKETPFE 97 (355)
Q Consensus 42 ~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~-----------~-------------g~~~~~s~~e 97 (355)
+....+|+|||+|.||..||..++.+|++|++||++++.++...+ . .++.+++.+
T Consensus 332 ~~~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~- 410 (737)
T TIGR02441 332 QRPVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS- 410 (737)
T ss_pred CCcccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-
Confidence 356678999999999999999999999999999999987654221 1 234455554
Q ss_pred HhhcCCEEEEeCCCchHHHH-HhcCCCccccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeC
Q 018506 98 VAEASDVVITMLPSSSHVLD-VYNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 175 (355)
Q Consensus 98 ~~~~aDiVi~~v~~~~~~~~-vl~~~~~~l~~~~~~~~~ivi-~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~ 175 (355)
.+++||+||-+++++..++. ++.+++.+++ ++.++. |+|+.++. .+.+.+.+ ..++-+.||.++
T Consensus 411 ~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~-----~~~ilasNTSsl~i~---~la~~~~~------p~r~ig~Hff~P 476 (737)
T TIGR02441 411 GFKNADMVIEAVFEDLSLKHKVIKEVEAVVP-----PHCIIASNTSALPIK---DIAAVSSR------PEKVIGMHYFSP 476 (737)
T ss_pred HhccCCeehhhccccHHHHHHHHHHHHhhCC-----CCcEEEEcCCCCCHH---HHHhhcCC------ccceEEEeccCC
Confidence 56899999999999988885 4444444443 334443 34444443 34444432 122234788887
Q ss_pred CCCCChHHHhcCceEEEecCCHHHHHHHHHHHHHcCCCeEEeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 018506 176 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGIS 254 (355)
Q Consensus 176 pv~g~~~~~~~g~~~~~~gg~~~~~~~v~~ll~~~g~~~~~~g~-~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~ 254 (355)
|..........+..+ ++++++.+..++..+|+.++.+.+ .| .+.|.+.. ..+.|++.+.++ |++
T Consensus 477 ~~~m~LvEvv~g~~T-----s~~~~~~~~~~~~~lgk~pv~v~d~pG------Fi~NRi~~---~~~~ea~~lv~e-Gv~ 541 (737)
T TIGR02441 477 VDKMQLLEIITHDGT-----SKDTLASAVAVGLKQGKVVIVVKDGPG------FYTTRCLG---PMLAEVIRLLQE-GVD 541 (737)
T ss_pred cccCceEEEeCCCCC-----CHHHHHHHHHHHHHCCCeEEEECCcCC------chHHHHHH---HHHHHHHHHHHc-CCC
Confidence 654444443344434 899999999999999999998877 33 23466443 456899988754 789
Q ss_pred HHHHHHHHH
Q 018506 255 ASTLTKILN 263 (355)
Q Consensus 255 ~~~~~~~~~ 263 (355)
++++..++.
T Consensus 542 ~~~ID~a~~ 550 (737)
T TIGR02441 542 PKKLDKLTT 550 (737)
T ss_pred HHHHHHHHH
Confidence 999998863
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-13 Score=141.22 Aligned_cols=197 Identities=15% Similarity=0.179 Sum_probs=136.1
Q ss_pred CCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh-----------C-------------CCCCCCCHHH
Q 018506 42 SCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----------M-------------GVPTKETPFE 97 (355)
Q Consensus 42 ~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~-----------~-------------g~~~~~s~~e 97 (355)
+....||+|||+|.||..||..++.+|++|+++|++++.++...+ . .++.+++. +
T Consensus 310 ~~~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 388 (714)
T TIGR02437 310 AKDVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-A 388 (714)
T ss_pred ccccceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-H
Confidence 346678999999999999999999999999999999987654221 1 23344555 4
Q ss_pred HhhcCCEEEEeCCCchHHHH-HhcCCCccccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeC
Q 018506 98 VAEASDVVITMLPSSSHVLD-VYNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 175 (355)
Q Consensus 98 ~~~~aDiVi~~v~~~~~~~~-vl~~~~~~l~~~~~~~~~ivi-~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~ 175 (355)
.+++||+||.+++.+..++. ++.++..+++ ++.++. |+|+.++. .+.+.+.. ..++-+.||.++
T Consensus 389 ~~~~aDlViEav~E~l~~K~~vf~~l~~~~~-----~~~ilasnTS~l~i~---~ia~~~~~------p~r~ig~Hff~P 454 (714)
T TIGR02437 389 GFDNVDIVVEAVVENPKVKAAVLAEVEQHVR-----EDAILASNTSTISIS---LLAKALKR------PENFCGMHFFNP 454 (714)
T ss_pred HhcCCCEEEEcCcccHHHHHHHHHHHHhhCC-----CCcEEEECCCCCCHH---HHHhhcCC------cccEEEEecCCC
Confidence 56899999999999988875 4545444443 334443 23333333 34444421 222334788887
Q ss_pred CCCCChHHHhcCceEEEecCCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 018506 176 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISA 255 (355)
Q Consensus 176 pv~g~~~~~~~g~~~~~~gg~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~ 255 (355)
|..........+..+ ++++++.+..++..+|+.++.+.+. .+ .+.|.+.. ..+.|++.+.+ .|.++
T Consensus 455 ~~~~~lvEvv~g~~T-----s~~~~~~~~~~~~~lgk~pv~v~d~-pG----fi~NRl~~---~~~~ea~~l~~-eG~~~ 520 (714)
T TIGR02437 455 VHRMPLVEVIRGEKS-----SDETIATVVAYASKMGKTPIVVNDC-PG----FFVNRVLF---PYFGGFSKLLR-DGADF 520 (714)
T ss_pred cccCceEeecCCCCC-----CHHHHHHHHHHHHHcCCEEEEeCCc-cc----chHHHHHH---HHHHHHHHHHH-CCCCH
Confidence 755544444444445 8999999999999999999988762 22 34566544 34689999876 56999
Q ss_pred HHHHHHHHhcCC
Q 018506 256 STLTKILNSSSA 267 (355)
Q Consensus 256 ~~~~~~~~~~~~ 267 (355)
+++..++..+.+
T Consensus 521 ~~ID~a~~~~~G 532 (714)
T TIGR02437 521 VRIDKVMEKQFG 532 (714)
T ss_pred HHHHHHHHhcCC
Confidence 999999876543
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.4e-13 Score=121.14 Aligned_cols=172 Identities=17% Similarity=0.251 Sum_probs=126.7
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh--HHHHHHhCCCCCC--CCH-HHHhhcCCEEEEeCCCchHHHHH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN--VMKMFSDMGVPTK--ETP-FEVAEASDVVITMLPSSSHVLDV 118 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~--~~~~l~~~g~~~~--~s~-~e~~~~aDiVi~~v~~~~~~~~v 118 (355)
.+|+|+|+|+|.||..+++.|.++|+.|.+++++.. ..+...+.|+... .+. .+.+..+|+||++||-. .+..+
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~-~~~~~ 80 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIE-ATEEV 80 (279)
T ss_pred CCcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHH-HHHHH
Confidence 468999999999999999999999999877765544 4444444555332 233 56777899999999964 88888
Q ss_pred hcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEE-eCCCCCC--hHHHhcCceEEEecC
Q 018506 119 YNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML-DAPVSGG--VLAAEAGTLTFMVGG 195 (355)
Q Consensus 119 l~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~-~~pv~g~--~~~~~~g~~~~~~gg 195 (355)
+..+.+.+ .++.+|+|.++++....+.+.+..++ ..+|+ -+|++|+ ......+...+++-.
T Consensus 81 l~~l~~~l-----~~g~iv~Dv~S~K~~v~~a~~~~~~~-----------~~~~vg~HPM~G~~~~~~lf~~~~~vltp~ 144 (279)
T COG0287 81 LKELAPHL-----KKGAIVTDVGSVKSSVVEAMEKYLPG-----------DVRFVGGHPMFGPEADAGLFENAVVVLTPS 144 (279)
T ss_pred HHHhcccC-----CCCCEEEecccccHHHHHHHHHhccC-----------CCeeEecCCCCCCcccccccCCCEEEEcCC
Confidence 88766544 36789999999998887777776542 01344 4788888 455556776666643
Q ss_pred ---CHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHH
Q 018506 196 ---SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNL 232 (355)
Q Consensus 196 ---~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~ 232 (355)
+.+.++.+.++++.+|.+++++.+--....+-.++-+
T Consensus 145 ~~~~~~~~~~~~~~~~~~ga~~v~~~~eeHD~~~a~vshL 184 (279)
T COG0287 145 EGTEKEWVEEVKRLWEALGARLVEMDAEEHDRVMAAVSHL 184 (279)
T ss_pred CCCCHHHHHHHHHHHHHcCCEEEEcChHHHhHHHHHHHHH
Confidence 4678999999999999999998886676666544444
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.9e-14 Score=120.58 Aligned_cols=136 Identities=19% Similarity=0.262 Sum_probs=95.8
Q ss_pred eEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCC--------------CCCCCCHHHHhhcCCEEEEeCCCc
Q 018506 47 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG--------------VPTKETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 47 kIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g--------------~~~~~s~~e~~~~aDiVi~~v~~~ 112 (355)
||+|||+|+||+++|..|+++||+|++|.|+++.++.+++.+ +.++++++++++++|+||+++|.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs- 79 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPS- 79 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-G-
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccH-
Confidence 799999999999999999999999999999999998887632 33567899999999999999997
Q ss_pred hHHHHHhcCCCccccCCCCCCCeEEEEcCCCC-HHHH----HHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcC
Q 018506 113 SHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID-PQTS----RNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAG 187 (355)
Q Consensus 113 ~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~-~~~~----~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g 187 (355)
+..+++++.+.+.+. ++++++.++.+. +.+. +.+.+.++.. .+.++.+|.+.........
T Consensus 80 ~~~~~~~~~l~~~l~-----~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~----------~~~~lsGP~~A~Ei~~~~p 144 (157)
T PF01210_consen 80 QAHREVLEQLAPYLK-----KGQIIISATKGFEPGTLLLLSEVIEEILPIP----------RIAVLSGPSFAEEIAEGKP 144 (157)
T ss_dssp GGHHHHHHHHTTTSH-----TT-EEEETS-SEETTEEEEHHHHHHHHHSSC----------GEEEEESS--HHHHHTT--
T ss_pred HHHHHHHHHHhhccC-----CCCEEEEecCCcccCCCccHHHHHHHHhhhc----------ceEEeeCccHHHHHHcCCC
Confidence 488999998877774 456888887765 3332 3333333321 1678889987665555555
Q ss_pred ceEEEecCCHH
Q 018506 188 TLTFMVGGSED 198 (355)
Q Consensus 188 ~~~~~~gg~~~ 198 (355)
+..++.+.+.+
T Consensus 145 t~~~~as~~~~ 155 (157)
T PF01210_consen 145 TAVVIASKNEE 155 (157)
T ss_dssp EEEEEEESSHH
T ss_pred eEEEEEecccc
Confidence 55556566654
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.3e-14 Score=107.40 Aligned_cols=89 Identities=25% Similarity=0.389 Sum_probs=72.7
Q ss_pred eEEEEcccHHhHHHHHHHHHCC---CcEEEE-eCChhHHHHHHh-CCCCCCC-CHHHHhhcCCEEEEeCCCchHHHHHhc
Q 018506 47 SVGFIGLGNMGFRMASNLMKAG---YKMAVH-DVNCNVMKMFSD-MGVPTKE-TPFEVAEASDVVITMLPSSSHVLDVYN 120 (355)
Q Consensus 47 kIgiIG~G~mG~~ia~~L~~~G---~~V~v~-dr~~~~~~~l~~-~g~~~~~-s~~e~~~~aDiVi~~v~~~~~~~~vl~ 120 (355)
||||||+|+||.+|++.|.++| ++|.++ +|++++.+++.+ .+..... +..|+++++|+||+|+|. +++.+++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p-~~~~~v~~ 79 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKP-QQLPEVLS 79 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-G-GGHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECH-HHHHHHHH
Confidence 7999999999999999999999 999955 999999999866 4555555 899999999999999985 68889887
Q ss_pred CCCccccCCCCCCCeEEEEcCC
Q 018506 121 GPNGLLQGGNSVRPQLLIDSST 142 (355)
Q Consensus 121 ~~~~~l~~~~~~~~~ivi~~st 142 (355)
.+ ... .+++++|+++.
T Consensus 80 ~i-~~~-----~~~~~vis~~a 95 (96)
T PF03807_consen 80 EI-PHL-----LKGKLVISIAA 95 (96)
T ss_dssp HH-HHH-----HTTSEEEEEST
T ss_pred HH-hhc-----cCCCEEEEeCC
Confidence 75 222 25679998865
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >TIGR00745 apbA_panE 2-dehydropantoate 2-reductase | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.1e-13 Score=122.46 Aligned_cols=249 Identities=13% Similarity=0.143 Sum_probs=155.1
Q ss_pred HHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCC--------------CCCCHHHHhhcCCEEEEeCCCchHHHHHhc
Q 018506 55 NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP--------------TKETPFEVAEASDVVITMLPSSSHVLDVYN 120 (355)
Q Consensus 55 ~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~--------------~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~ 120 (355)
.||+.+|..|+++||+|++|+|+ ++.+.+++.|.. ..+++++ ....|+||+|++.. ++++++.
T Consensus 1 aiG~~~a~~L~~~G~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~-~~~~D~iiv~vKs~-~~~~~l~ 77 (293)
T TIGR00745 1 AVGSLYGAYLARAGHDVTLLARG-EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE-LPPADLVIITVKAY-QTEEAAA 77 (293)
T ss_pred CchHHHHHHHHhCCCcEEEEecH-HHHHHHHHCCcEEEecCCcEEEcccccccChhh-cCCCCEEEEeccch-hHHHHHH
Confidence 37999999999999999999997 777777765421 1223444 56899999999986 7888888
Q ss_pred CCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCC--ChHHHhcCceEEEecC---
Q 018506 121 GPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSG--GVLAAEAGTLTFMVGG--- 195 (355)
Q Consensus 121 ~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g--~~~~~~~g~~~~~~gg--- 195 (355)
.+.+.+. ++.+|+...++.. ..+.+.+.++...+. . +..+..+-..+ .......+. +.+|.
T Consensus 78 ~l~~~l~-----~~~~iv~~qNG~g-~~~~l~~~~~~~~v~--~----g~~~~~~~~~~pg~v~~~~~~~--~~iG~~~~ 143 (293)
T TIGR00745 78 LLLPLIG-----KNTKVLFLQNGLG-HEERLRELLPARRIL--G----GVVTHGAVREEPGVVHHAGLGA--TKIGDYVG 143 (293)
T ss_pred HhHhhcC-----CCCEEEEccCCCC-CHHHHHHHhCccCEE--E----EEEEEeeEEcCCcEEEEecccc--EEEecCCC
Confidence 7766653 3356666666542 234555555421110 0 11111111111 111111222 33332
Q ss_pred CHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHcCCC
Q 018506 196 SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA---------------------VSMLGVSEALTLGQSLGIS 254 (355)
Q Consensus 196 ~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~---------------------~~~~~~~Ea~~la~~~Gi~ 254 (355)
..+..+.+.++|+..+..+....++-...|.|++.|...+ ....++.|+..++++.|++
T Consensus 144 ~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~ 223 (293)
T TIGR00745 144 ENEAVEALAELLNEAGIPAELHGDILAAIWKKLLVNAAINPLTALLDCKNGELLENPEARELLRRLMDEVVRVARAEGVD 223 (293)
T ss_pred chHHHHHHHHHHHhCCCCCEecchHHHHHHHHHhheechhHHHHHHCCccceeccChhHHHHHHHHHHHHHHHHHhCCCC
Confidence 1245677888888888877888888899999999886433 2455688999999999975
Q ss_pred --HHHHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 018506 255 --ASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLC 332 (355)
Q Consensus 255 --~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~ 332 (355)
.+.+.+.+........ ....++..++..|++.+-++..| ++++.++++|+++|.++.++++++..+
T Consensus 224 ~~~~~~~~~~~~~~~~~~-~~~sSm~~D~~~gr~tEid~i~G-----------~~v~~a~~~gv~~P~~~~l~~~~~~~e 291 (293)
T TIGR00745 224 LPDDEVEELVRAVIRMTA-ENTSSMLQDLLRGRRTEIDAING-----------AVVRLAEKLGIDAPVNRTLYALLKALE 291 (293)
T ss_pred CCHHHHHHHHHHHHhcCC-CCCChHHHHHHcCCcchHHHhcc-----------HHHHHHHHcCCCCChHHHHHHHHHHhh
Confidence 4434444433211100 00012223344455544444433 799999999999999999999887654
|
This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH |
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.1e-12 Score=129.73 Aligned_cols=170 Identities=16% Similarity=0.183 Sum_probs=119.7
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHh-hcCCEEEEeCCCchHHHHHhcC
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVA-EASDVVITMLPSSSHVLDVYNG 121 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~-~~aDiVi~~v~~~~~~~~vl~~ 121 (355)
.++|+|+|||+|.||..++..|.+.|++|++|||+... +...+.|+....++.+++ .++|+||+|+|. ..+.+++..
T Consensus 50 ~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~-~~~~~vl~~ 127 (667)
T PLN02712 50 TTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAARSLGVSFFLDPHDLCERHPDVILLCTSI-ISTENVLKS 127 (667)
T ss_pred CCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHcCCEEeCCHHHHhhcCCCEEEEcCCH-HHHHHHHHh
Confidence 45689999999999999999999999999999998544 445556777777888865 569999999995 588888876
Q ss_pred CC-ccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCc-eEEeCCCCCChH--HHhcCceEEEec---
Q 018506 122 PN-GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENP-VMLDAPVSGGVL--AAEAGTLTFMVG--- 194 (355)
Q Consensus 122 ~~-~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~-~~~~~pv~g~~~--~~~~g~~~~~~g--- 194 (355)
+. +.+ .++++|+|++++.....+.+.+.++. +. .+..+|++|... ....+...++.+
T Consensus 128 l~~~~l-----~~g~iVvDv~SvK~~~~~~l~~~l~~-----------~~~~v~~HPMaG~e~~~~g~~~~~~~~~~~~~ 191 (667)
T PLN02712 128 LPLQRL-----KRNTLFVDVLSVKEFAKNLLLDYLPE-----------DFDIICSHPMFGPQSAKHGWDGLRFVYEKVRI 191 (667)
T ss_pred hhhhcC-----CCCeEEEECCCCcHHHHHHHHHhcCC-----------CCeEEeeCCcCCCccccchhccCcEEEeeccC
Confidence 53 222 25679999999887655555555432 13 344578887752 223333344442
Q ss_pred C-CH---HHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHH
Q 018506 195 G-SE---DAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICN 230 (355)
Q Consensus 195 g-~~---~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~ 230 (355)
+ +. +.++.++++++.+|.+++.+.+......+-.+.
T Consensus 192 ~~~~~~~~~~~~l~~l~~~lGa~v~~ms~eeHD~~~A~vs 231 (667)
T PLN02712 192 GNEELRVSRCKSFLEVFEREGCKMVEMSCTEHDKYAAESQ 231 (667)
T ss_pred CCccccHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHH
Confidence 2 22 345677799999999998887655555554443
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.4e-14 Score=119.87 Aligned_cols=154 Identities=18% Similarity=0.299 Sum_probs=94.8
Q ss_pred eEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh-----------C-------------CCCCCCCHHHHhhcC
Q 018506 47 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----------M-------------GVPTKETPFEVAEAS 102 (355)
Q Consensus 47 kIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~-----------~-------------g~~~~~s~~e~~~~a 102 (355)
||+|||+|.||..||..++.+|++|++||++++.++...+ . .+..+++++++. ++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a 79 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA 79 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence 6999999999999999999999999999999987544221 1 244567888887 99
Q ss_pred CEEEEeCCCchHHHH-HhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCCh
Q 018506 103 DVVITMLPSSSHVLD-VYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGV 181 (355)
Q Consensus 103 DiVi~~v~~~~~~~~-vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~ 181 (355)
|+||-++|....++. ++..++.++. ++.++...|+..+. ..+.+.+.. ..++-+.||.++|.....
T Consensus 80 dlViEai~E~l~~K~~~~~~l~~~~~-----~~~ilasnTSsl~i--~~la~~~~~------p~R~ig~Hf~~P~~~~~l 146 (180)
T PF02737_consen 80 DLVIEAIPEDLELKQELFAELDEICP-----PDTILASNTSSLSI--SELAAALSR------PERFIGMHFFNPPHLMPL 146 (180)
T ss_dssp SEEEE-S-SSHHHHHHHHHHHHCCS------TTSEEEE--SSS-H--HHHHTTSST------GGGEEEEEE-SSTTT--E
T ss_pred heehhhccccHHHHHHHHHHHHHHhC-----CCceEEecCCCCCH--HHHHhccCc------CceEEEEecccccccCce
Confidence 999999999887775 4444444432 44454433333322 334443321 111234788876643333
Q ss_pred HHHhcCceEEEecCCHHHHHHHHHHHHHcCCCeEEeCC
Q 018506 182 LAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGG 219 (355)
Q Consensus 182 ~~~~~g~~~~~~gg~~~~~~~v~~ll~~~g~~~~~~g~ 219 (355)
.....+.-+ +++.++.+..+++.+|+.++.+.+
T Consensus 147 VEvv~~~~T-----~~~~~~~~~~~~~~~gk~pv~v~D 179 (180)
T PF02737_consen 147 VEVVPGPKT-----SPETVDRVRALLRSLGKTPVVVKD 179 (180)
T ss_dssp EEEEE-TTS------HHHHHHHHHHHHHTT-EEEEEES
T ss_pred EEEeCCCCC-----CHHHHHHHHHHHHHCCCEEEEecC
Confidence 222222222 889999999999999998877643
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=3e-12 Score=132.86 Aligned_cols=185 Identities=17% Similarity=0.229 Sum_probs=131.8
Q ss_pred CceEEEEcccHHhHHHHHHHHHCC--CcEEEEeCChhHHHHHHhCCCC--CCCCHHHHhhcCCEEEEeCCCchHHHHHhc
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAG--YKMAVHDVNCNVMKMFSDMGVP--TKETPFEVAEASDVVITMLPSSSHVLDVYN 120 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G--~~V~v~dr~~~~~~~l~~~g~~--~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~ 120 (355)
..||+|||+|.||.++++.|.++| ++|++|||++++.+...+.|+. ...+..++++++|+||+|+|. +.+++++.
T Consensus 3 ~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~-~~~~~vl~ 81 (735)
T PRK14806 3 FGRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPV-LAMEKVLA 81 (735)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCH-HHHHHHHH
Confidence 368999999999999999999998 4799999999998887777764 455677888999999999996 57888887
Q ss_pred CCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChH--------HHhcCceEEE
Q 018506 121 GPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVL--------AAEAGTLTFM 192 (355)
Q Consensus 121 ~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~--------~~~~g~~~~~ 192 (355)
.+.+.++ ++.+|+|+++++....+.+.+.+.. .. ...+.++|+.|+.. ....+...++
T Consensus 82 ~l~~~~~-----~~~ii~d~~svk~~~~~~l~~~~~~-----~~----~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~ 147 (735)
T PRK14806 82 DLKPLLS-----EHAIVTDVGSTKGNVVDAARAVFGE-----LP----AGFVPGHPIAGSEKSGVHAANADLFRNHKVIL 147 (735)
T ss_pred HHHHhcC-----CCcEEEEcCCCchHHHHHHHHhccc-----cC----CeEEecCCcCcCCcchhhhhhhHHhCCCeEEE
Confidence 6655442 4579999999987777777666532 01 12467889876543 1223443444
Q ss_pred ec---CCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 018506 193 VG---GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEAL 245 (355)
Q Consensus 193 ~g---g~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~ 245 (355)
+. ++++..+.++++++.+|.+++++.+......+-++..... .+...+.|++
T Consensus 148 ~~~~~~~~~~~~~~~~l~~~~G~~~~~~~~~~hD~~~a~~~~~ph-~~~~~l~~~l 202 (735)
T PRK14806 148 TPLAETDPAALARVDRLWRAVGADVLHMDVAHHDEVLAATSHLPH-LLAFSLVDQL 202 (735)
T ss_pred ECCCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHhHHHHHhcchHH-HHHHHHHHHH
Confidence 43 4778899999999999988888876444444433433332 2233345553
|
|
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=4e-12 Score=117.61 Aligned_cols=192 Identities=16% Similarity=0.117 Sum_probs=121.2
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHH-HHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHh-cC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKM-FSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVY-NG 121 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~-l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl-~~ 121 (355)
+.++|||||+|+||.++|.+|.+.|++|.+++++.++... ..+.|+... ++.++++.+|+|++++|+. ....++ ..
T Consensus 16 ~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~-s~~eaa~~ADVVvLaVPd~-~~~~V~~~~ 93 (330)
T PRK05479 16 KGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVL-TVAEAAKWADVIMILLPDE-VQAEVYEEE 93 (330)
T ss_pred CCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeC-CHHHHHhcCCEEEEcCCHH-HHHHHHHHH
Confidence 4578999999999999999999999999998887554433 344566554 8999999999999999976 447777 43
Q ss_pred CCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCce-EEeCCCC-CC----hHHHhcCceEEE-ec
Q 018506 122 PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPV-MLDAPVS-GG----VLAAEAGTLTFM-VG 194 (355)
Q Consensus 122 ~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~-~~~~pv~-g~----~~~~~~g~~~~~-~g 194 (355)
+.+.++ ++++++.+........+ ...+. +.. +.-+|-. +. .-....|...++ +.
T Consensus 94 I~~~Lk-----~g~iL~~a~G~~i~~~~---~~p~~-----------~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~av~ 154 (330)
T PRK05479 94 IEPNLK-----EGAALAFAHGFNIHFGQ---IVPPA-----------DVDVIMVAPKGPGHLVRREYEEGGGVPCLIAVH 154 (330)
T ss_pred HHhcCC-----CCCEEEECCCCChhhce---eccCC-----------CCcEEEeCCCCCchhhhhhhhcCCCceEEEEec
Confidence 333332 45677656554443321 11110 111 1222332 11 111345655555 45
Q ss_pred CC--HHHHHHHHHHHHHcCCCeE-----EeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 018506 195 GS--EDAYQAAKPLFLSMGKNTI-----YCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTL 258 (355)
Q Consensus 195 g~--~~~~~~v~~ll~~~g~~~~-----~~g~-~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~ 258 (355)
.| .++.+.+..++..+|.... .+.+ .-+. .+-- ..++.+....++..+.......|++|+..
T Consensus 155 ~d~t~~a~~~a~~l~~aiG~~~~g~~~ttf~~e~~~d-l~ge-q~vl~gg~~~l~~~~~e~l~eaG~~pe~A 224 (330)
T PRK05479 155 QDASGNAKDLALAYAKGIGGTRAGVIETTFKEETETD-LFGE-QAVLCGGLTELIKAGFETLVEAGYQPEMA 224 (330)
T ss_pred CCCCHHHHHHHHHHHHHcCCCccceeeeeeccccccc-chhh-HHHHhhHHHHHHHHHHHHHHHcCCCHHHH
Confidence 54 8899999999999997643 1111 1011 1111 23344555667778888899999988774
|
|
| >KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.4e-12 Score=111.13 Aligned_cols=254 Identities=14% Similarity=0.151 Sum_probs=162.8
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC-----------------------------CCCCCCC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-----------------------------GVPTKET 94 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~-----------------------------g~~~~~s 94 (355)
.+..|+|||+|.||+.||+.-+.+|++|+++|++++.+.+..+. .+..+++
T Consensus 10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tn 89 (298)
T KOG2304|consen 10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTN 89 (298)
T ss_pred cccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcCC
Confidence 34569999999999999999999999999999998876543321 1344678
Q ss_pred HHHHhhcCCEEEEeCCCchHHHHHhc-CCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEE
Q 018506 95 PFEVAEASDVVITMLPSSSHVLDVYN-GPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML 173 (355)
Q Consensus 95 ~~e~~~~aDiVi~~v~~~~~~~~vl~-~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~ 173 (355)
..+++.++|+||.++-.+..++.-++ .++...+ +. .++-+.|.+. ....+.....+ ..++.|.||.
T Consensus 90 v~~~v~dadliiEAivEn~diK~~lF~~l~~~ak-----~~-~il~tNTSSl-~lt~ia~~~~~------~srf~GlHFf 156 (298)
T KOG2304|consen 90 VSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAK-----SS-TILATNTSSL-SLTDIASATQR------PSRFAGLHFF 156 (298)
T ss_pred HHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcc-----cc-eEEeecccce-eHHHHHhhccC------hhhhceeecc
Confidence 88889999999999877777775444 3343332 22 3332322222 22334433322 2223358888
Q ss_pred eC-CCCCChHHHhcCceEEEecCCHHHHHHHHHHHHHcCCCeEEeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 018506 174 DA-PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSL 251 (355)
Q Consensus 174 ~~-pv~g~~~~~~~g~~~~~~gg~~~~~~~v~~ll~~~g~~~~~~g~-~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~ 251 (355)
++ |++.-.. ..++..+ +++.+..+.++-+.+|+.++.+-+ +|. +.|.+. +-.+.|++++-++-
T Consensus 157 NPvPvMKLvE-Vir~~~T-----S~eTf~~l~~f~k~~gKttVackDtpGF------IVNRlL---iPyl~ea~r~yerG 221 (298)
T KOG2304|consen 157 NPVPVMKLVE-VIRTDDT-----SDETFNALVDFGKAVGKTTVACKDTPGF------IVNRLL---IPYLMEAIRMYERG 221 (298)
T ss_pred CCchhHHHhh-hhcCCCC-----CHHHHHHHHHHHHHhCCCceeecCCCch------hhhHHH---HHHHHHHHHHHHhc
Confidence 86 4544333 3333335 889999999999999999888877 442 335533 34467999999999
Q ss_pred CCCHHHHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHH--HHHHhCCCChHHHHHHHHHH
Q 018506 252 GISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALA--SAKEVGVDCPLTSQAQDIYA 329 (355)
Q Consensus 252 Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~--~a~~~gv~~pi~~~~~~~~~ 329 (355)
..+.+++...+..|.+.. +.|-.+ .||- +++...--++-..+ -....-.|.|++...++--+
T Consensus 222 dAskeDIDtaMklGagyP-------MGPfEL------~Dyv---GLDt~kfvmdgwhe~~pe~~~f~psPll~klVaegk 285 (298)
T KOG2304|consen 222 DASKEDIDTAMKLGAGYP-------MGPFEL------ADYV---GLDTCKFVMDGWHEGYPEDSLFAPSPLLDKLVAEGK 285 (298)
T ss_pred CCcHhhHHHHHhccCCCC-------CChHHH------HHHh---hHHHHHHHHHHHHhcCCcccccCCChHHHHHHhccc
Confidence 999999999998775421 111001 1231 22222211111111 12334457899988888888
Q ss_pred HHHHCCCCCCcH
Q 018506 330 KLCENGHDSKDF 341 (355)
Q Consensus 330 ~~~~~g~g~~d~ 341 (355)
.+.+.|.|..+|
T Consensus 286 lGrKtg~GfY~Y 297 (298)
T KOG2304|consen 286 LGRKTGEGFYKY 297 (298)
T ss_pred cccccCccceec
Confidence 888888887665
|
|
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.8e-13 Score=106.45 Aligned_cols=102 Identities=18% Similarity=0.196 Sum_probs=67.5
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEE-EEeCChhHHHHHHh-CCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhc
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMA-VHDVNCNVMKMFSD-MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYN 120 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~-v~dr~~~~~~~l~~-~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~ 120 (355)
...+||+|||+|++|..|++.|.++||+|. +|+|+++..+.+.+ .+.....++.|+++.+|++|++|||+ .+..+..
T Consensus 8 ~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDd-aI~~va~ 86 (127)
T PF10727_consen 8 AARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDD-AIAEVAE 86 (127)
T ss_dssp ----EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CC-HHHHHHH
T ss_pred CCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechH-HHHHHHH
Confidence 356899999999999999999999999986 45898888777765 34445567888899999999999987 8888877
Q ss_pred CCCccccCCCCCCCeEEEEcCCCCHHHH
Q 018506 121 GPNGLLQGGNSVRPQLLIDSSTIDPQTS 148 (355)
Q Consensus 121 ~~~~~l~~~~~~~~~ivi~~st~~~~~~ 148 (355)
++...- ...++++|++||...+...
T Consensus 87 ~La~~~---~~~~g~iVvHtSGa~~~~v 111 (127)
T PF10727_consen 87 QLAQYG---AWRPGQIVVHTSGALGSDV 111 (127)
T ss_dssp HHHCC-----S-TT-EEEES-SS--GGG
T ss_pred HHHHhc---cCCCCcEEEECCCCChHHh
Confidence 653321 1236789999999877643
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.9e-11 Score=113.18 Aligned_cols=188 Identities=19% Similarity=0.160 Sum_probs=116.3
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeC-ChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDV-NCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPN 123 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr-~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~ 123 (355)
.+||+|||+|+||.+++.+|.++|++|+++++ ++++.+.+.+.|+... ++.++++++|+|++++|+..+...++.++.
T Consensus 3 ~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~-s~~ea~~~ADiVvLaVpp~~~~~~v~~ei~ 81 (314)
T TIGR00465 3 GKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVG-TVEEAIPQADLIMNLLPDEVQHEVYEAEIQ 81 (314)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEEC-CHHHHHhcCCEEEEeCCcHhHHHHHHHHHH
Confidence 47899999999999999999999999877654 4455666666777654 688889999999999997535555554443
Q ss_pred ccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCCh-H----HHhcCceEEE-ec--C
Q 018506 124 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGV-L----AAEAGTLTFM-VG--G 195 (355)
Q Consensus 124 ~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~-~----~~~~g~~~~~-~g--g 195 (355)
+.++ ++. +|..+.+..- ..+...++. .. -.+.-+|-.-+. . ....|...++ +. .
T Consensus 82 ~~l~-----~g~-iVs~aaG~~i--~~~~~~~~~-----~~-----~VvrvmPn~p~~~vr~~~~~G~G~~~l~a~~~~~ 143 (314)
T TIGR00465 82 PLLK-----EGK-TLGFSHGFNI--HFVQIVPPK-----DV-----DVVMVAPKGPGTLVREEYKEGFGVPTLIAVEQDP 143 (314)
T ss_pred hhCC-----CCc-EEEEeCCccH--hhccccCCC-----CC-----cEEEECCCCCcHHHHHHhhcCCCeeEEEEecCCC
Confidence 3332 344 4444444432 223333321 00 112223322111 1 1145554443 33 2
Q ss_pred CHHHHHHHHHHHHHcCCC-------eE--E-----eCC----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Q 018506 196 SEDAYQAAKPLFLSMGKN-------TI--Y-----CGG----AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISAST 257 (355)
Q Consensus 196 ~~~~~~~v~~ll~~~g~~-------~~--~-----~g~----~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~ 257 (355)
+.+..+.+..+++.+|.. .+ . ++. .|+++++ +..+.|++ .+.|++++.
T Consensus 144 ~~~~~~~~~~~~~~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~pa~-----------v~~~~eal---v~~G~~~e~ 209 (314)
T TIGR00465 144 TGEAMAIALAYAKAIGGGRAGVLETTFKEETESDLFGEQAVLCGGLTAL-----------IKAGFDTL---VEAGYQPEL 209 (314)
T ss_pred CHHHHHHHHHHHHHcCCCccceeechhHhhhhHHhcCcchhHHhHHHHH-----------HHHHHHHH---HHcCCCHHH
Confidence 567889999999999986 31 1 111 2333333 23344666 799999999
Q ss_pred HHHHHHhc
Q 018506 258 LTKILNSS 265 (355)
Q Consensus 258 ~~~~~~~~ 265 (355)
.+..+.+.
T Consensus 210 A~~~~~~~ 217 (314)
T TIGR00465 210 AYFETVHE 217 (314)
T ss_pred HHHHHHHH
Confidence 88777654
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.2e-11 Score=113.71 Aligned_cols=159 Identities=17% Similarity=0.216 Sum_probs=115.9
Q ss_pred CceEEEEcc-cHHhHHHHHHHHHC-CCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 45 FESVGFIGL-GNMGFRMASNLMKA-GYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 45 ~mkIgiIG~-G~mG~~ia~~L~~~-G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
++||+|||+ |.||..+|+.|.+. |++|++||++. ....++.+.+.++|+||+|+|- ..+.+++.++
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d-----------~~~~~~~~~v~~aDlVilavPv-~~~~~~l~~l 71 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPAD-----------PGSLDPATLLQRADVLIFSAPI-RHTAALIEEY 71 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCc-----------cccCCHHHHhcCCCEEEEeCCH-HHHHHHHHHH
Confidence 589999999 99999999999974 88999999851 1234677888999999999996 4777888776
Q ss_pred CccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEE-eCCCCCChH-HHhcCceEEEecC-CHHH
Q 018506 123 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML-DAPVSGGVL-AAEAGTLTFMVGG-SEDA 199 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~-~~pv~g~~~-~~~~g~~~~~~gg-~~~~ 199 (355)
.+.... ..++++|+|.++++....+.+.+. . ..|+ .+|++|+.. ....+...+++.. ..+.
T Consensus 72 ~~~~~~--l~~~~iVtDVgSvK~~i~~~~~~~---------~-----~~fVG~HPMaG~E~s~lf~g~~~iltp~~~~~~ 135 (370)
T PRK08818 72 VALAGG--RAAGQLWLDVTSIKQAPVAAMLAS---------Q-----AEVVGLHPMTAPPKSPTLKGRVMVVCEARLQHW 135 (370)
T ss_pred hhhhcC--CCCCeEEEECCCCcHHHHHHHHhc---------C-----CCEEeeCCCCCCCCCcccCCCeEEEeCCCchhH
Confidence 554211 125789999999986655544211 1 2244 478887743 3456776666654 4455
Q ss_pred HHHHHHHHHHcCCCeEEeCCcchHHHHHHHHH
Q 018506 200 YQAAKPLFLSMGKNTIYCGGAGNGAAAKICNN 231 (355)
Q Consensus 200 ~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n 231 (355)
.+.++++++.+|.+++.+.+......+-.++-
T Consensus 136 ~~~v~~l~~~~Ga~v~~~~aeeHD~~~A~vS~ 167 (370)
T PRK08818 136 SPWVQSLCSALQAECVYATPEHHDRVMALVQA 167 (370)
T ss_pred HHHHHHHHHHcCCEEEEcCHHHHHHHHHHHHH
Confidence 78899999999999999888777777765543
|
|
| >TIGR00112 proC pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.5e-11 Score=106.95 Aligned_cols=222 Identities=16% Similarity=0.189 Sum_probs=141.1
Q ss_pred CCcEEEEeCChhHHHHHHh-CCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHH
Q 018506 68 GYKMAVHDVNCNVMKMFSD-MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ 146 (355)
Q Consensus 68 G~~V~v~dr~~~~~~~l~~-~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~ 146 (355)
.++|++|+|++++.+.+.+ .|+..++++.++++++|+||+||+ |+++++++..+...+. ++++||+++.+.+.
T Consensus 9 ~~~I~v~~R~~e~~~~l~~~~g~~~~~~~~e~~~~aDiIiLaVk-P~~i~~vl~~l~~~~~-----~~~~ivS~~agi~~ 82 (245)
T TIGR00112 9 AYDIIVINRSPEKLAALAKELGIVASSDAQEAVKEADVVFLAVK-PQDLEEVLSELKSEKG-----KDKLLISIAAGVTL 82 (245)
T ss_pred CCeEEEEcCCHHHHHHHHHHcCcEEeCChHHHHhhCCEEEEEeC-HHHHHHHHHHHhhhcc-----CCCEEEEecCCCCH
Confidence 3789999999999988866 477778889999999999999999 7899999877654332 34688888777654
Q ss_pred HHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecC--CHHHHHHHHHHHHHcCCCeEEeCC-----
Q 018506 147 TSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG--SEDAYQAAKPLFLSMGKNTIYCGG----- 219 (355)
Q Consensus 147 ~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg--~~~~~~~v~~ll~~~g~~~~~~g~----- 219 (355)
..+.+.++.. . ..+--.|. .+.....|...+..+. +++..+.++.+|+.+|..++ +.+
T Consensus 83 --~~l~~~~~~~----~------~ivR~mPn--~~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~-v~E~~~~~ 147 (245)
T TIGR00112 83 --EKLSQLLGGT----R------RVVRVMPN--TPAKVGAGVTAIAANANVSEEDRALVLALFKAVGEVVE-LPEALMDA 147 (245)
T ss_pred --HHHHHHcCCC----C------eEEEECCC--hHHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCEEE-ECHHHcch
Confidence 4565655310 0 11112332 2333344553433332 56778999999999997543 332
Q ss_pred ----cchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCHHHHHHHHHhcCCCcc-cccCCCCCCCcccCCCCCCCCCC
Q 018506 220 ----AGNGAAAKICNNLTMAVSMLGVSEALTL-GQSLGISASTLTKILNSSSARCW-SSDSYNPVPGVMEGVPASRNYGG 293 (355)
Q Consensus 220 ----~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l-a~~~Gi~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~~~ 293 (355)
.|+++++ +..+.|++.- +.+.|+++++..+++.++..++. ........++.+ .++...|
T Consensus 148 ~talsgsgPA~-----------~~~~~~al~~~~v~~Gl~~~~A~~lv~~~~~G~a~l~~~~~~~~~~l----~~~v~sp 212 (245)
T TIGR00112 148 VTALSGSGPAY-----------VFLFIEALADAGVKQGLPRELALELAAQTVKGAAKLLEESGEHPALL----KDQVTSP 212 (245)
T ss_pred HHhhccCcHHH-----------HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHH----HHcCCCC
Confidence 2333333 3335555554 89999999999999887653211 111011111111 1223345
Q ss_pred CcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 018506 294 GFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLC 332 (355)
Q Consensus 294 ~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~ 332 (355)
|.+. ...++..++.|+.--+.+++.+.++++.
T Consensus 213 gGtT-------~~gl~~Le~~~~~~~~~~a~~aa~~r~~ 244 (245)
T TIGR00112 213 GGTT-------IAGLAVLEEKGVRGAVIEAVEAAVRRSR 244 (245)
T ss_pred cHHH-------HHHHHHHHHCChHHHHHHHHHHHHHHhc
Confidence 4332 3577888888988888888888877654
|
This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs. |
| >KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.2e-10 Score=97.20 Aligned_cols=248 Identities=20% Similarity=0.271 Sum_probs=168.0
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCC----cEEEEeCChhHH-HHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhc
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGY----KMAVHDVNCNVM-KMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYN 120 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~----~V~v~dr~~~~~-~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~ 120 (355)
|+|||||.|+|..++++.+...|. .++.+-.+.... ..+...|+..+.+..+..+.+|+++++++ |+.+..++.
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~g~~~~~~n~~~~~~s~v~~~svK-p~~i~~vls 79 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEALGVKTVFTNLEVLQASDVVFLSVK-PQVIESVLS 79 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhcCCceeeechHHHHhhccceeEeec-chhHHHHhh
Confidence 789999999999999999999984 466665532223 33667788877777899999999999997 579999988
Q ss_pred CCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEec--CCHH
Q 018506 121 GPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVG--GSED 198 (355)
Q Consensus 121 ~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~g--g~~~ 198 (355)
+....+. ++++++.+.-+..- ..+++.+... .+. ...+++.| .....+...+-.+ ...+
T Consensus 80 ~~~~~~~-----~~~iivS~aaG~tl--~~l~~~l~~~---~rv----iRvmpNtp-----~~v~eg~sv~~~g~~~~~~ 140 (267)
T KOG3124|consen 80 EIKPKVS-----KGKIIVSVAAGKTL--SSLESKLSPP---TRV----IRVMPNTP-----SVVGEGASVYAIGCHATNE 140 (267)
T ss_pred cCccccc-----cceEEEEEeecccH--HHHHHhcCCC---Cce----EEecCCCh-----hhhhcCcEEEeeCCCcchh
Confidence 7765432 45688877665533 3455555310 000 01234444 2333444222222 2456
Q ss_pred HHHHHHHHHHHcCCCeE--------EeCCcchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCHHHHHHHHHhcCCCc
Q 018506 199 AYQAAKPLFLSMGKNTI--------YCGGAGNGAAAKICNNLTMAVSMLGVSEALTL-GQSLGISASTLTKILNSSSARC 269 (355)
Q Consensus 199 ~~~~v~~ll~~~g~~~~--------~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l-a~~~Gi~~~~~~~~~~~~~~~s 269 (355)
..+.++++++..|.... ++|-.|+++++ . ..+.|+++. +.++|++++..+++..++-...
T Consensus 141 D~~l~~~ll~~vG~~~evpE~~iDavTgLsGSgPAy---------~--f~~ieaLadGgVkmGlPr~lA~~laaqtllGA 209 (267)
T KOG3124|consen 141 DLELVEELLSAVGLCEEVPEKCIDAVTGLSGSGPAY---------V--FVAIEALADGGVKMGLPRQLAYRLAAQTLLGA 209 (267)
T ss_pred hHHHHHHHHHhcCcceeCcHHhhhHHhhccCCcHHH---------H--HHHHHHHhccccccCCCHHHHHHHHHHHHHhH
Confidence 77999999999997543 45556888877 3 346788888 9999999999999988765321
Q ss_pred -ccccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCC
Q 018506 270 -WSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENG 335 (355)
Q Consensus 270 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g 335 (355)
-+.......|..++ +...+||.+.- +.+...++-|++.-++.++.+.-.++.+.|
T Consensus 210 akMVl~s~qHP~~Lk----d~V~SPgG~TI-------~glh~LE~ggfRs~linaVeaa~~r~~el~ 265 (267)
T KOG3124|consen 210 AKMVLASGQHPAQLK----DDVCSPGGTTI-------YGLHALEKGGFRSGLINAVEAATKRARELG 265 (267)
T ss_pred HHHHHhccCCcHHHh----CCCCCCCcchH-------HHHHHHHhCCchhHHHHHHHHHHHHHHHhc
Confidence 22112223455554 34456754332 678889999999999999998888877654
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=3e-10 Score=107.81 Aligned_cols=111 Identities=15% Similarity=0.215 Sum_probs=91.9
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
..-++|||||+|+||..+|++|...|.+|.+|||++...+...+.++....+++++++.||+|++++|...+++.++..
T Consensus 190 L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~- 268 (385)
T PRK07574 190 LEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDA- 268 (385)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCH-
Confidence 4558999999999999999999999999999999864434334456665678999999999999999999999988753
Q ss_pred CccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 123 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
+.++.++ ++.++||++.+..-..+.+.+.+.+
T Consensus 269 -~~l~~mk--~ga~lIN~aRG~iVDe~AL~~AL~s 300 (385)
T PRK07574 269 -DVLSRMK--RGSYLVNTARGKIVDRDAVVRALES 300 (385)
T ss_pred -HHHhcCC--CCcEEEECCCCchhhHHHHHHHHHh
Confidence 3555543 6789999999998888888888865
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.8e-10 Score=105.81 Aligned_cols=113 Identities=16% Similarity=0.183 Sum_probs=93.5
Q ss_pred CCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcC
Q 018506 42 SCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 121 (355)
Q Consensus 42 ~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~ 121 (355)
...-++|||||+|+||..+|+.|...|.+|.+|||++...+...+.|+...+++++++++||+|++++|...+++.++..
T Consensus 196 ~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~ 275 (386)
T PLN03139 196 DLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNK 275 (386)
T ss_pred CCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCH
Confidence 34568999999999999999999999999999999864444444556666679999999999999999999999998853
Q ss_pred CCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 018506 122 PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 158 (355)
Q Consensus 122 ~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~ 158 (355)
+.++.+ .++.++||++.+..-..+.+.+.+.+.
T Consensus 276 --~~l~~m--k~ga~lIN~aRG~iVDe~AL~~AL~sG 308 (386)
T PLN03139 276 --ERIAKM--KKGVLIVNNARGAIMDTQAVADACSSG 308 (386)
T ss_pred --HHHhhC--CCCeEEEECCCCchhhHHHHHHHHHcC
Confidence 356553 377899999999988888888888653
|
|
| >KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.5e-09 Score=96.55 Aligned_cols=205 Identities=16% Similarity=0.126 Sum_probs=136.3
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHh-hcCCEEEEeCCCchHHHHHhcCCCc
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVA-EASDVVITMLPSSSHVLDVYNGPNG 124 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~-~~aDiVi~~v~~~~~~~~vl~~~~~ 124 (355)
.+|||||.|+||.-+|..|.++||.|...+|+. .-...+..|....+.+.+++ +.+|+|++|+.. ..++.++.....
T Consensus 53 l~IaIIGfGnmGqflAetli~aGh~li~hsRsd-yssaa~~yg~~~ft~lhdlcerhpDvvLlctsi-lsiekilatypf 130 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD-YSSAAEKYGSAKFTLLHDLCERHPDVVLLCTSI-LSIEKILATYPF 130 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHhcCceeEecCcch-hHHHHHHhcccccccHHHHHhcCCCEEEEEehh-hhHHHHHHhcCc
Confidence 579999999999999999999999999999964 43333446666777777766 579999999965 578888765533
Q ss_pred cccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEe-CCCCCChHHH--hcCceEEEe---cCC--
Q 018506 125 LLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGVLAA--EAGTLTFMV---GGS-- 196 (355)
Q Consensus 125 ~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~-~pv~g~~~~~--~~g~~~~~~---gg~-- 196 (355)
.- ...++++++..+....+...+.+++++. +.++. .|++|+.... .+|-..++. .|+
T Consensus 131 qr----lrrgtlfvdvlSvKefek~lfekYLPkd-----------fDIlctHpmfGPksvnh~wqglpfVydkvRig~~~ 195 (480)
T KOG2380|consen 131 QR----LRRGTLFVDVLSVKEFEKELFEKYLPKD-----------FDILCTHPMFGPKSVNHEWQGLPFVYDKVRIGYAA 195 (480)
T ss_pred hh----hccceeEeeeeecchhHHHHHHHhCccc-----------cceEeecCCcCCCcCCCccccCceEEEEeeccccc
Confidence 20 1256899999999877777888888752 55555 5666654222 233233333 233
Q ss_pred --HHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---HHHHHHHHHhcCCCcc
Q 018506 197 --EDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGIS---ASTLTKILNSSSARCW 270 (355)
Q Consensus 197 --~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~---~~~~~~~~~~~~~~s~ 270 (355)
++.++.+.++|...|.+.+++.-.... |+.....+-.+.+...-.+..++..-++ .+.+.++......++|
T Consensus 196 ~r~ercE~fleIf~cegckmVemS~eeHD---kiaAdsQfVTHtagr~lg~aw~~syPintkGyEnlldLseniysdsf 271 (480)
T KOG2380|consen 196 SRPERCEFFLEIFACEGCKMVEMSYEEHD---KIAADSQFVTHTAGRSLGSAWAKSYPINTKGYENLLDLSENIYSDSF 271 (480)
T ss_pred cchHHHHHHHHHHHhcCCeEEEEEeeccc---ccccchhHHHHHHHHHHHHhhhhhCceecccHHHHHHHHHHhhcchh
Confidence 789999999999999988876531111 2222222224444444444455554443 5666777666555555
|
|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.1e-10 Score=105.91 Aligned_cols=116 Identities=19% Similarity=0.212 Sum_probs=92.0
Q ss_pred cccccCCCCCCCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCC-CCCCHHHHhhcCCEEEEeCC
Q 018506 32 MRRFFSSQVPSCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-TKETPFEVAEASDVVITMLP 110 (355)
Q Consensus 32 ~~~~~~~~~~~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~-~~~s~~e~~~~aDiVi~~v~ 110 (355)
+..|.+.+......++|||||+|+||..+|+.|...|++|.+|||+... .+.. ...++++++++||+|++++|
T Consensus 109 ~g~w~~~~~~~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~------~~~~~~~~~l~ell~~aDiv~~~lp 182 (303)
T PRK06436 109 NGNFKQSPTKLLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN------DGISSIYMEPEDIMKKSDFVLISLP 182 (303)
T ss_pred cCCCCCCCCCCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc------cCcccccCCHHHHHhhCCEEEECCC
Confidence 3467765555566789999999999999999988889999999997432 2332 24689999999999999999
Q ss_pred CchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 111 SSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 111 ~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
...+++.++. .+.++.+ .++.++||++.+.+...+.+.+.+.+
T Consensus 183 ~t~~T~~li~--~~~l~~m--k~ga~lIN~sRG~~vd~~aL~~aL~~ 225 (303)
T PRK06436 183 LTDETRGMIN--SKMLSLF--RKGLAIINVARADVVDKNDMLNFLRN 225 (303)
T ss_pred CCchhhcCcC--HHHHhcC--CCCeEEEECCCccccCHHHHHHHHHc
Confidence 9888888764 2355543 36789999999998888888888864
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.6e-09 Score=98.23 Aligned_cols=160 Identities=16% Similarity=0.250 Sum_probs=109.5
Q ss_pred HHHHHHHCC--CcEEEEeCChhHHHHHHhCCCCCC-CCHHHHhhcCCEEEEeCCCchHHHHHhcCCCccccCCCCCCCeE
Q 018506 60 MASNLMKAG--YKMAVHDVNCNVMKMFSDMGVPTK-ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQL 136 (355)
Q Consensus 60 ia~~L~~~G--~~V~v~dr~~~~~~~l~~~g~~~~-~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~~~l~~~~~~~~~i 136 (355)
||+.|.++| ++|++||++++..+...+.|+... .+..+++.++|+||+|+|- ..+.+++..+.+.+. ++.+
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~-~~~~~~l~~~~~~~~-----~~~i 74 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPV-SAIEDVLEEIAPYLK-----PGAI 74 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-H-HHHHHHHHHHHCGS------TTSE
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCH-HHHHHHHHHhhhhcC-----CCcE
Confidence 688999999 689999999999888877776543 2336788999999999996 578888887666543 5689
Q ss_pred EEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEe-CCCCCC--------hHHHhcCceEEEecC---CHHHHHHHH
Q 018506 137 LIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGG--------VLAAEAGTLTFMVGG---SEDAYQAAK 204 (355)
Q Consensus 137 vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~-~pv~g~--------~~~~~~g~~~~~~gg---~~~~~~~v~ 204 (355)
|+|.++++....+.+.+.++. +..|+. +|++|. ......|...+++-. +++.++.++
T Consensus 75 v~Dv~SvK~~~~~~~~~~~~~-----------~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~ 143 (258)
T PF02153_consen 75 VTDVGSVKAPIVEAMERLLPE-----------GVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELVE 143 (258)
T ss_dssp EEE--S-CHHHHHHHHHHHTS-----------SGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHhcCc-----------ccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChHHHHHHHH
Confidence 999999998887777776641 134444 677766 233446777777733 467899999
Q ss_pred HHHHHcCCCeEEeCCcchHHHHHHHHHHHHHH
Q 018506 205 PLFLSMGKNTIYCGGAGNGAAAKICNNLTMAV 236 (355)
Q Consensus 205 ~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~ 236 (355)
++++.+|.+++.+..--....+-++..+....
T Consensus 144 ~l~~~~Ga~~~~~~~eeHD~~~A~vshlpH~~ 175 (258)
T PF02153_consen 144 ELWEALGARVVEMDAEEHDRIMAYVSHLPHLL 175 (258)
T ss_dssp HHHHHCT-EEEE--HHHHHHHHHHHTHHHHHH
T ss_pred HHHHHCCCEEEEcCHHHHHHHHHHHHHHHHHH
Confidence 99999999988887766666666665554433
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.3e-10 Score=97.89 Aligned_cols=121 Identities=17% Similarity=0.171 Sum_probs=89.8
Q ss_pred cccc---cCCCCCCCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEe
Q 018506 32 MRRF---FSSQVPSCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITM 108 (355)
Q Consensus 32 ~~~~---~~~~~~~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~ 108 (355)
...| .........-++|||||+|.+|..+|+.|..-|.+|++|||+..........+. ...+++|+++.||+|+++
T Consensus 20 ~~~W~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~-~~~~l~ell~~aDiv~~~ 98 (178)
T PF02826_consen 20 NGEWASRERFPGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGV-EYVSLDELLAQADIVSLH 98 (178)
T ss_dssp TTBHHHHTTTTBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTE-EESSHHHHHHH-SEEEE-
T ss_pred cCCCCCCcCCCccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccc-eeeehhhhcchhhhhhhh
Confidence 3466 344444556789999999999999999999999999999999887664555555 445999999999999999
Q ss_pred CCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 109 LPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 109 v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
+|...+.+.++.. ..++.+ .++.++||++-+..-..+.+.+.+.+
T Consensus 99 ~plt~~T~~li~~--~~l~~m--k~ga~lvN~aRG~~vde~aL~~aL~~ 143 (178)
T PF02826_consen 99 LPLTPETRGLINA--EFLAKM--KPGAVLVNVARGELVDEDALLDALES 143 (178)
T ss_dssp SSSSTTTTTSBSH--HHHHTS--TTTEEEEESSSGGGB-HHHHHHHHHT
T ss_pred hccccccceeeee--eeeecc--ccceEEEeccchhhhhhhHHHHHHhh
Confidence 9977666655443 244443 36789999999887776778888764
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.6e-10 Score=103.60 Aligned_cols=108 Identities=17% Similarity=0.256 Sum_probs=86.3
Q ss_pred CCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcC
Q 018506 42 SCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 121 (355)
Q Consensus 42 ~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~ 121 (355)
...-++|||||+|.||..+|+.|...|++|.+|||+++..... .....+++++++++|+|++++|...+.+.++..
T Consensus 143 ~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~----~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~ 218 (330)
T PRK12480 143 PVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF----LTYKDSVKEAIKDADIISLHVPANKESYHLFDK 218 (330)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh----hhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhH
Confidence 3456799999999999999999999999999999987654322 234568999999999999999998777776642
Q ss_pred CCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 122 PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 122 ~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
..++.. .++.++||++.+..-....+.+.+.+
T Consensus 219 --~~l~~m--k~gavlIN~aRG~~vd~~aL~~aL~~ 250 (330)
T PRK12480 219 --AMFDHV--KKGAILVNAARGAVINTPDLIAAVND 250 (330)
T ss_pred --HHHhcC--CCCcEEEEcCCccccCHHHHHHHHHc
Confidence 355443 36789999999987777778887764
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.09 E-value=6e-10 Score=104.54 Aligned_cols=109 Identities=16% Similarity=0.199 Sum_probs=87.9
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
..-++|||||+|.||..+|+.|...|++|.+|||++.... ....+.. ..++++++++||+|++++|...+++.++..
T Consensus 148 L~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~~~~-~~~l~ell~~aDiV~l~lP~t~~T~~~i~~- 224 (333)
T PRK13243 148 VYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEA-EKELGAE-YRPLEELLRESDFVSLHVPLTKETYHMINE- 224 (333)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhh-HHHcCCE-ecCHHHHHhhCCEEEEeCCCChHHhhccCH-
Confidence 3558999999999999999999999999999999865432 2233443 358999999999999999998888887753
Q ss_pred CccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 123 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
+.++.+ .++.++||++.+..-..+.+.+.+.+
T Consensus 225 -~~~~~m--k~ga~lIN~aRg~~vd~~aL~~aL~~ 256 (333)
T PRK13243 225 -ERLKLM--KPTAILVNTARGKVVDTKALVKALKE 256 (333)
T ss_pred -HHHhcC--CCCeEEEECcCchhcCHHHHHHHHHc
Confidence 355543 36789999999998888888888864
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.9e-10 Score=103.98 Aligned_cols=119 Identities=15% Similarity=0.204 Sum_probs=91.9
Q ss_pred ccccCCCCCCCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCc
Q 018506 33 RRFFSSQVPSCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 33 ~~~~~~~~~~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~ 112 (355)
..|.+.+......++|||||+|.||..+|+.|...|++|.+||++++....... .....++++++++||+|++++|..
T Consensus 124 ~~w~~~~~~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~--~~~~~~l~e~l~~aDvvv~~lPlt 201 (312)
T PRK15469 124 SHWQPLPEYHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQS--FAGREELSAFLSQTRVLINLLPNT 201 (312)
T ss_pred CCcCCCCCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCcee--ecccccHHHHHhcCCEEEECCCCC
Confidence 467765554556689999999999999999999999999999987654321111 112357899999999999999999
Q ss_pred hHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 113 SHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 113 ~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
.+++.++.. +.++.+ .++.++||++-+..-..+.+.+.+.+
T Consensus 202 ~~T~~li~~--~~l~~m--k~ga~lIN~aRG~vVde~aL~~aL~~ 242 (312)
T PRK15469 202 PETVGIINQ--QLLEQL--PDGAYLLNLARGVHVVEDDLLAALDS 242 (312)
T ss_pred HHHHHHhHH--HHHhcC--CCCcEEEECCCccccCHHHHHHHHhc
Confidence 998888753 355543 36789999999987777778887764
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.03 E-value=7.7e-10 Score=92.28 Aligned_cols=105 Identities=16% Similarity=0.132 Sum_probs=76.6
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCC-CcEEEEeCChhHHHHHHhC-CC----CCCCCHHHHhhcCCEEEEeCCCchH-HH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDM-GV----PTKETPFEVAEASDVVITMLPSSSH-VL 116 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G-~~V~v~dr~~~~~~~l~~~-g~----~~~~s~~e~~~~aDiVi~~v~~~~~-~~ 116 (355)
..++|+|||+|.||..++..|.+.| ++|++|||++++.+.+.+. +. ....+..++++++|+||+|+|.... ++
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~~~ 97 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKPGD 97 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCCCC
Confidence 4578999999999999999999996 7899999999988776553 32 2345677778899999999998643 22
Q ss_pred HHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHh
Q 018506 117 DVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVS 156 (355)
Q Consensus 117 ~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~ 156 (355)
.+..... . ..++++++|+++.++.+ .+.+...
T Consensus 98 ~~~~~~~-~-----~~~~~~v~D~~~~~~~~--~l~~~~~ 129 (155)
T cd01065 98 ELPLPPS-L-----LKPGGVVYDVVYNPLET--PLLKEAR 129 (155)
T ss_pred CCCCCHH-H-----cCCCCEEEEcCcCCCCC--HHHHHHH
Confidence 2221111 1 13567999999986654 5655554
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.1e-09 Score=100.11 Aligned_cols=194 Identities=18% Similarity=0.152 Sum_probs=112.0
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPN 123 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~ 123 (355)
.-.+|||||+|.||.++|++|.+.|++|++|+|.....+.....|... .+++|+++.||+|++++|++. .+.++..
T Consensus 15 kgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v-~sl~Eaak~ADVV~llLPd~~-t~~V~~~-- 90 (335)
T PRK13403 15 QGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEV-MSVSEAVRTAQVVQMLLPDEQ-QAHVYKA-- 90 (335)
T ss_pred CcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEE-CCHHHHHhcCCEEEEeCCChH-HHHHHHH--
Confidence 457899999999999999999999999999987654444455557654 489999999999999999864 4677642
Q ss_pred ccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCC-CChHH----HhcCceEEEec---C
Q 018506 124 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVS-GGVLA----AEAGTLTFMVG---G 195 (355)
Q Consensus 124 ~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~-g~~~~----~~~g~~~~~~g---g 195 (355)
+++..++ ++++++ .+.+..-.-. ...+. ... ++.++ +|-. |+... ...|.+.+++= .
T Consensus 91 eil~~MK--~GaiL~-f~hgfni~~~---~i~pp----~~v----dv~mv-aPKgpG~~vR~~y~~G~Gvp~l~av~qd~ 155 (335)
T PRK13403 91 EVEENLR--EGQMLL-FSHGFNIHFG---QINPP----SYV----DVAMV-APKSPGHLVRRVFQEGNGVPALVAVHQDA 155 (335)
T ss_pred HHHhcCC--CCCEEE-ECCCcceecC---ceeCC----CCC----eEEEE-CCCCCChHHHHHHHcCCCceeEEEEEECC
Confidence 2444322 444444 3443322111 11110 000 12233 4432 33332 12344443331 2
Q ss_pred CHHHHHHHHHHHHHcCCC---eEEeCCcchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHH
Q 018506 196 SEDAYQAAKPLFLSMGKN---TIYCGGAGNGAAAKIC--NNLTMAVSMLGVSEALTLGQSLGISAST 257 (355)
Q Consensus 196 ~~~~~~~v~~ll~~~g~~---~~~~g~~g~a~~~Kl~--~n~~~~~~~~~~~Ea~~la~~~Gi~~~~ 257 (355)
+..+.+.+......+|.. ++.+ ....-.-..|. +..+......++.-++....++|.+|+.
T Consensus 156 sg~a~~~ala~a~~iG~~ragv~~t-tf~~EtetDlfgEq~vL~Gg~~~li~~gfe~lveaGy~pe~ 221 (335)
T PRK13403 156 TGTALHVALAYAKGVGCTRAGVIET-TFQEETETDLFGEQAVLCGGVTALVKAGFETLTEGGYRPEI 221 (335)
T ss_pred CCcHHHHHHHHHHHcCCCceeEEec-chHHHHhhhhcccchhhHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 334677788888888854 2211 00000011111 1233445555566666778888888776
|
|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.6e-09 Score=101.76 Aligned_cols=108 Identities=19% Similarity=0.224 Sum_probs=83.4
Q ss_pred CCCceEEEEcccHHhHHHHHHHH-HCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcC
Q 018506 43 CQFESVGFIGLGNMGFRMASNLM-KAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 121 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~-~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~ 121 (355)
..-++|||||+|.||..+|+.|+ ..|.+|++||+++.... ...+...++++++++++|+|++++|.....+.++..
T Consensus 144 l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~---~~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~ 220 (332)
T PRK08605 144 IKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKA---ATYVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNA 220 (332)
T ss_pred eCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhH---HhhccccCCHHHHHHhCCEEEEeCCCCcchhhhcCH
Confidence 45689999999999999999994 46889999998875431 123455668999999999999999988766654432
Q ss_pred CCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 122 PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 122 ~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
+.++.. .++.++||++.+.....+.+.+.+.+
T Consensus 221 --~~l~~m--k~gailIN~sRG~~vd~~aL~~aL~~ 252 (332)
T PRK08605 221 --DLFKHF--KKGAVFVNCARGSLVDTKALLDALDN 252 (332)
T ss_pred --HHHhcC--CCCcEEEECCCCcccCHHHHHHHHHh
Confidence 234432 36789999999998888888888764
|
|
| >KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.8e-09 Score=91.18 Aligned_cols=201 Identities=15% Similarity=0.220 Sum_probs=134.0
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHH-----------HHhCC--------------CCCCCCHHHH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKM-----------FSDMG--------------VPTKETPFEV 98 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~-----------l~~~g--------------~~~~~s~~e~ 98 (355)
+..||+|+|.|.+|+..|..|+..||+|..||..++.+.. +.+.| +..++++.|+
T Consensus 2 s~~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~ 81 (313)
T KOG2305|consen 2 SFGKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNEL 81 (313)
T ss_pred CccceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHH
Confidence 3578999999999999999999999999999998875432 11222 4567899999
Q ss_pred hhcCCEEEEeCCCchHHHH-HhcCCCccccCCCCCCCeEEEEcCCCC--HHHHHHHHHHHhhchhhhccCCCCCceEEeC
Q 018506 99 AEASDVVITMLPSSSHVLD-VYNGPNGLLQGGNSVRPQLLIDSSTID--PQTSRNISAAVSNCILKEKKDSWENPVMLDA 175 (355)
Q Consensus 99 ~~~aDiVi~~v~~~~~~~~-vl~~~~~~l~~~~~~~~~ivi~~st~~--~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~ 175 (355)
.+.+=.|--|+|..-.++. ++..++.++. +.+|+..||.. |.. ..+....+. . +-..|-+++
T Consensus 82 vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d------~~tIlaSSTSt~mpS~--~s~gL~~k~-----q--~lvaHPvNP 146 (313)
T KOG2305|consen 82 VKGAIHIQECVPEDLNLKKQLYKQLDEIAD------PTTILASSTSTFMPSK--FSAGLINKE-----Q--CLVAHPVNP 146 (313)
T ss_pred HhhhhhHHhhchHhhHHHHHHHHHHHHhcC------CceEEeccccccChHH--Hhhhhhhhh-----h--eeEecCCCC
Confidence 9999999999998766664 4444444542 23555544433 332 122222110 0 011455666
Q ss_pred CCCCChHHHhcCceEEEecCCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 018506 176 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISA 255 (355)
Q Consensus 176 pv~g~~~~~~~g~~~~~~gg~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~ 255 (355)
|.+-+.......+-+ +++.+++.++++..+|.+++.....-.|.+. |.+ ..+.++|--.++..-+++.
T Consensus 147 PyfiPLvElVPaPwT-----sp~tVdrt~~lM~sigq~pV~l~rei~Gf~l----nri---q~Ailne~wrLvasGil~v 214 (313)
T KOG2305|consen 147 PYFIPLVELVPAPWT-----SPDTVDRTRALMRSIGQEPVTLKREILGFAL----NRI---QYAILNETWRLVASGILNV 214 (313)
T ss_pred CcccchheeccCCCC-----ChhHHHHHHHHHHHhCCCCccccccccccee----ccc---cHHHHHHHHHHHHccCcch
Confidence 665544433333323 7789999999999999877655442222222 333 3455799999999999999
Q ss_pred HHHHHHHHhcCCCccc
Q 018506 256 STLTKILNSSSARCWS 271 (355)
Q Consensus 256 ~~~~~~~~~~~~~s~~ 271 (355)
.++..+++.|.+..+.
T Consensus 215 ~dvD~VmS~GLG~RYA 230 (313)
T KOG2305|consen 215 NDVDAVMSAGLGPRYA 230 (313)
T ss_pred hhHHHHHhcCCCcchh
Confidence 9999999988765443
|
|
| >KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1e-08 Score=92.92 Aligned_cols=279 Identities=13% Similarity=0.098 Sum_probs=160.6
Q ss_pred CceEEEEcccHHhHHHHHHHHHC--CC-----cEEEEeCChh------HHHHH-HhC--------------CCCCCCCHH
Q 018506 45 FESVGFIGLGNMGFRMASNLMKA--GY-----KMAVHDVNCN------VMKMF-SDM--------------GVPTKETPF 96 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~--G~-----~V~v~dr~~~------~~~~l-~~~--------------g~~~~~s~~ 96 (355)
..||+|||.|+||+++|+.+.++ .+ +|..|-+..+ ++.+. +.. ++.+++++.
T Consensus 21 ~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl~ 100 (372)
T KOG2711|consen 21 PLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDLV 100 (372)
T ss_pred ceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchHH
Confidence 46899999999999999999864 12 5777754322 22222 211 345678999
Q ss_pred HHhhcCCEEEEeCCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHH-----HHHHHHHHHhhchhhhccCCCCCce
Q 018506 97 EVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ-----TSRNISAAVSNCILKEKKDSWENPV 171 (355)
Q Consensus 97 e~~~~aDiVi~~v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~-----~~~~l~~~~~~~~~~~~~g~~~~~~ 171 (355)
+++.++|++|..+|. +.+.++++++.+.++. +...|.++.+... ..+-+.+.+.+ ..|. ...
T Consensus 101 ea~~dADilvf~vPh-Qf~~~ic~~l~g~vk~-----~~~aISL~KG~e~~~~g~~i~liS~iI~~-----~lgI--~~~ 167 (372)
T KOG2711|consen 101 EAAKDADILVFVVPH-QFIPRICEQLKGYVKP-----GATAISLIKGVEVGEEGPGIRLISQIIHR-----ALGI--PCS 167 (372)
T ss_pred HHhccCCEEEEeCCh-hhHHHHHHHHhcccCC-----CCeEEEeecceeccCCCCceeehHHHHHH-----HhCC--Cce
Confidence 999999999999995 7888999998888763 3455666554321 12223333332 1221 256
Q ss_pred EEeCCCCCChHHHhcCceEEEecCCHHHH-HHHHHHHHHcCCCeEEeCCc-----------------chHHHHHHHHHHH
Q 018506 172 MLDAPVSGGVLAAEAGTLTFMVGGSEDAY-QAAKPLFLSMGKNTIYCGGA-----------------GNGAAAKICNNLT 233 (355)
Q Consensus 172 ~~~~pv~g~~~~~~~g~~~~~~gg~~~~~-~~v~~ll~~~g~~~~~~g~~-----------------g~a~~~Kl~~n~~ 233 (355)
++.+|-+........-.-+.+.+.++... ..+..+|+.-..+++.+.+. |....+.+.+|..
T Consensus 168 vL~GaNiA~EVa~~~f~e~tIg~~~~~~~~~~l~~lf~~p~FrV~~~~D~~~VEi~GaLKNVvAiaaGfvdGL~~g~NTk 247 (372)
T KOG2711|consen 168 VLMGANIASEVANEKFCETTIGYKDKKEAGILLKKLFRTPYFRVVVVEDADGVEICGALKNVVAIAAGFVDGLGLGNNTK 247 (372)
T ss_pred eecCCchHHHHHhccccceeEeccchhhcchHHHHHhCCCceEEEEeccchHhHHhhhHHhHHHHhhhhhhhccCCcchH
Confidence 78777776665555444344444433333 34777887666555433321 3334445666777
Q ss_pred HHHHHHHHHHHHHHHHHcCC--CHHHHHH------HHHhcCC--CcccccCCCCCCCcccC-CC---CCCCCCCCcchhh
Q 018506 234 MAVSMLGVSEALTLGQSLGI--SASTLTK------ILNSSSA--RCWSSDSYNPVPGVMEG-VP---ASRNYGGGFASKL 299 (355)
Q Consensus 234 ~~~~~~~~~Ea~~la~~~Gi--~~~~~~~------~~~~~~~--~s~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~ 299 (355)
.+.+...+.|+..++...=- .++++++ ++.+..+ +.|..+.+ .++ +. .+.....|- .-.
T Consensus 248 aAi~r~Gl~Em~~F~~~f~p~~~~~t~~escGvaDlitTC~gGRNr~~aeaf------aktgk~~~~~E~ell~Gq-~~Q 320 (372)
T KOG2711|consen 248 AAIIRLGLLEMIKFATHFYPGSKPTTFFESCGVADLITTCYGGRNRKVAEAF------AKTGKSLEELEKELLNGQ-KLQ 320 (372)
T ss_pred HHHHHhhHHHHHHHHHHhCCCCCcceeeccccHHHHHHHHhcCccHHHHHHH------HHcCCCHHHHHHHhhCCC-ccc
Confidence 77788888888888766432 2333322 2222111 01111100 000 00 000000000 111
Q ss_pred HHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHHHCCCCCCcHHHHHHHHhc
Q 018506 300 MAKDLNLALASAKEVGV--DCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 350 (355)
Q Consensus 300 ~~kd~~~~~~~a~~~gv--~~pi~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~ 350 (355)
.....+.+.+++++.|+ ..|++.+++++.. +++...++++.+.+
T Consensus 321 G~~Ta~~Vy~~L~~~~l~~kfPlftaVykI~~-------~~~~~~~lle~l~~ 366 (372)
T KOG2711|consen 321 GPATAKEVYELLQKKGLVEKFPLFTAVYKICY-------ERLPPQALLECLRN 366 (372)
T ss_pred CcHHHHHHHHHHHHcChhhhCcHHHHHHHHHh-------cCCCHHHHHHHHhc
Confidence 22334678889999999 7899999999885 55566777775543
|
|
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=7.6e-09 Score=94.29 Aligned_cols=106 Identities=19% Similarity=0.144 Sum_probs=76.7
Q ss_pred CCCCceEEEEcccHHhHHHHHHHHHC--CCcEE-EEeCChhHHHHHHhC-CC-CCCCCHHHHhhcCCEEEEeCCCchHHH
Q 018506 42 SCQFESVGFIGLGNMGFRMASNLMKA--GYKMA-VHDVNCNVMKMFSDM-GV-PTKETPFEVAEASDVVITMLPSSSHVL 116 (355)
Q Consensus 42 ~~~~mkIgiIG~G~mG~~ia~~L~~~--G~~V~-v~dr~~~~~~~l~~~-g~-~~~~s~~e~~~~aDiVi~~v~~~~~~~ 116 (355)
+|+.+||||||+|.||..++..|.+. ++++. +|||++++.+.+.+. +. ...++.++++.++|+|++|+|.. ...
T Consensus 3 ~m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~-~h~ 81 (271)
T PRK13302 3 SRPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPAS-VLR 81 (271)
T ss_pred CCCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcH-HHH
Confidence 45678999999999999999999874 67765 889999998877653 43 56788999999999999999976 444
Q ss_pred HHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHh
Q 018506 117 DVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVS 156 (355)
Q Consensus 117 ~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~ 156 (355)
++... .++ .++.++..+.......+++.+...
T Consensus 82 e~~~~---aL~-----aGk~Vi~~s~gal~~~~~L~~~A~ 113 (271)
T PRK13302 82 AIVEP---VLA-----AGKKAIVLSVGALLRNEDLIDLAR 113 (271)
T ss_pred HHHHH---HHH-----cCCcEEEecchhHHhHHHHHHHHH
Confidence 54432 343 233444455554445566666554
|
|
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.2e-09 Score=104.10 Aligned_cols=122 Identities=14% Similarity=0.135 Sum_probs=93.2
Q ss_pred cccccCCC--CCCCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeC
Q 018506 32 MRRFFSSQ--VPSCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITML 109 (355)
Q Consensus 32 ~~~~~~~~--~~~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v 109 (355)
+..|.+.. .....-++|||||+|.||..+|+.|...|++|.+||+.... +...+.++...+++++++++||+|++++
T Consensus 123 ~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~~~l~ell~~aDvV~l~l 201 (525)
T TIGR01327 123 EGEWDRKAFMGTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISP-ERAEQLGVELVDDLDELLARADFITVHT 201 (525)
T ss_pred cCCccccccCccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCCEEcCCHHHHHhhCCEEEEcc
Confidence 34676432 12345578999999999999999999999999999985322 2233456655678999999999999999
Q ss_pred CCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 018506 110 PSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 158 (355)
Q Consensus 110 ~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~ 158 (355)
|...+++.++.. +.++.+ .++.++||++.+..-....+.+.+.+.
T Consensus 202 Plt~~T~~li~~--~~l~~m--k~ga~lIN~aRG~~vde~aL~~aL~~g 246 (525)
T TIGR01327 202 PLTPETRGLIGA--EELAKM--KKGVIIVNCARGGIIDEAALYEALEEG 246 (525)
T ss_pred CCChhhccCcCH--HHHhcC--CCCeEEEEcCCCceeCHHHHHHHHHcC
Confidence 998888887742 355543 367899999999987778888888653
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=98.91 E-value=7.7e-09 Score=97.51 Aligned_cols=120 Identities=18% Similarity=0.171 Sum_probs=88.3
Q ss_pred ccccCCCCCCCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHH------------HhCCCCCCCCHHHHhh
Q 018506 33 RRFFSSQVPSCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMF------------SDMGVPTKETPFEVAE 100 (355)
Q Consensus 33 ~~~~~~~~~~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l------------~~~g~~~~~s~~e~~~ 100 (355)
+.|.........-++|||||+|.||..+|+.|...|.+|++|||+..+.... ..... ...+++++++
T Consensus 147 ~~w~~~~~~~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~ell~ 225 (347)
T PLN02928 147 RRLGEPIGDTLFGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKG-GHEDIYEFAG 225 (347)
T ss_pred CCcccccccCCCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccC-cccCHHHHHh
Confidence 3465432233456899999999999999999999999999999974322111 11112 3458999999
Q ss_pred cCCEEEEeCCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 101 ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 101 ~aDiVi~~v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
.||+|++++|.....+.++.. +.++.+ .++.++||++-+..-....+.+.+.+
T Consensus 226 ~aDiVvl~lPlt~~T~~li~~--~~l~~M--k~ga~lINvaRG~lVde~AL~~AL~~ 278 (347)
T PLN02928 226 EADIVVLCCTLTKETAGIVND--EFLSSM--KKGALLVNIARGGLLDYDAVLAALES 278 (347)
T ss_pred hCCEEEECCCCChHhhcccCH--HHHhcC--CCCeEEEECCCccccCHHHHHHHHHc
Confidence 999999999988887776653 355543 36789999999887666778777764
|
|
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.8e-09 Score=96.14 Aligned_cols=124 Identities=20% Similarity=0.178 Sum_probs=94.3
Q ss_pred ccccccccCCCC--CCCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEE
Q 018506 29 SSAMRRFFSSQV--PSCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVI 106 (355)
Q Consensus 29 ~~~~~~~~~~~~--~~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi 106 (355)
++++..|.+... ....-+++||||+|.+|+.+|..+..-|.+|.+||+...+. .....+....++++++++.||+|+
T Consensus 124 ~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~-~~~~~~~~~~~~Ld~lL~~sDiv~ 202 (324)
T COG0111 124 SQRRGEWDRKAFRGTELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRE-RAGVDGVVGVDSLDELLAEADILT 202 (324)
T ss_pred HHHcCCccccccccccccCCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchh-hhccccceecccHHHHHhhCCEEE
Confidence 334457776222 22346899999999999999999999999999999943332 222245666789999999999999
Q ss_pred EeCCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 107 TMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 107 ~~v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
+.+|....++.++... .++.+ +++.++||++-+..-....+.+.+.+
T Consensus 203 lh~PlT~eT~g~i~~~--~~a~M--K~gailIN~aRG~vVde~aL~~AL~~ 249 (324)
T COG0111 203 LHLPLTPETRGLINAE--ELAKM--KPGAILINAARGGVVDEDALLAALDS 249 (324)
T ss_pred EcCCCCcchhcccCHH--HHhhC--CCCeEEEECCCcceecHHHHHHHHHc
Confidence 9999988888877643 34433 36789999999987777788887764
|
|
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.6e-09 Score=103.38 Aligned_cols=120 Identities=15% Similarity=0.156 Sum_probs=92.5
Q ss_pred cccccCCCC--CCCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeC
Q 018506 32 MRRFFSSQV--PSCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITML 109 (355)
Q Consensus 32 ~~~~~~~~~--~~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v 109 (355)
+..|.+... ....-++|||||+|.||..+|+.|...|++|.+|||+... +...+.++... +++++++.||+|++++
T Consensus 125 ~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~-~l~ell~~aDiV~l~l 202 (526)
T PRK13581 125 AGKWERKKFMGVELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERAAQLGVELV-SLDELLARADFITLHT 202 (526)
T ss_pred cCCCCccCccccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCCEEE-cHHHHHhhCCEEEEcc
Confidence 446765322 2235578999999999999999999999999999986432 22334556555 8999999999999999
Q ss_pred CCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 110 PSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 110 ~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
|...+++.++.. +.++.+ .++.++||++.+..-..+.+.+.+.+
T Consensus 203 P~t~~t~~li~~--~~l~~m--k~ga~lIN~aRG~~vde~aL~~aL~~ 246 (526)
T PRK13581 203 PLTPETRGLIGA--EELAKM--KPGVRIINCARGGIIDEAALAEALKS 246 (526)
T ss_pred CCChHhhcCcCH--HHHhcC--CCCeEEEECCCCceeCHHHHHHHHhc
Confidence 998888887742 355543 36789999999998877888888765
|
|
| >COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=6e-07 Score=78.42 Aligned_cols=198 Identities=21% Similarity=0.250 Sum_probs=123.5
Q ss_pred CceEEEEcccHH--------------------hHHHHHHHHHCCCcEEEEeCChh-----HHHHHHhCCCCCCCCHHHHh
Q 018506 45 FESVGFIGLGNM--------------------GFRMASNLMKAGYKMAVHDVNCN-----VMKMFSDMGVPTKETPFEVA 99 (355)
Q Consensus 45 ~mkIgiIG~G~m--------------------G~~ia~~L~~~G~~V~v~dr~~~-----~~~~l~~~g~~~~~s~~e~~ 99 (355)
+|||+|.|+|+- |+.||..++++||+|++.+.|.+ ..+++.+.|+..+++..+++
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa 80 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAA 80 (340)
T ss_pred CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhh
Confidence 588999999873 78899999999999999976643 45677788999999999999
Q ss_pred hcCCEEEEeCCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHH-HHHHHhhchhhhccCCCCCceEEeCCCC
Q 018506 100 EASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRN-ISAAVSNCILKEKKDSWENPVMLDAPVS 178 (355)
Q Consensus 100 ~~aDiVi~~v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~-l~~~~~~~~~~~~~g~~~~~~~~~~pv~ 178 (355)
+.+.+.++.+|-....-.+... ++.+ .+++.+|.+++|.+|-..-. ++..+.... +..|. ..+-.+.+-
T Consensus 81 ~~~Ei~VLFTPFGk~T~~Iare---i~~h--vpEgAVicnTCT~sp~vLy~~LE~~Lr~kR--~dVGv---ssmHPAgvP 150 (340)
T COG4007 81 EHGEIHVLFTPFGKATFGIARE---ILEH--VPEGAVICNTCTVSPVVLYYSLEGELRTKR--EDVGV---SSMHPAGVP 150 (340)
T ss_pred hcceEEEEecccchhhHHHHHH---HHhh--CcCCcEecccccCchhHHHHHhhhhhcCch--hhcCc---cccCCCCCC
Confidence 9999999999987655555544 3333 35788999999998764332 443332110 12220 111112222
Q ss_pred CChHHHhcCceEEEec--------CCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 018506 179 GGVLAAEAGTLTFMVG--------GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQ- 249 (355)
Q Consensus 179 g~~~~~~~g~~~~~~g--------g~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~- 249 (355)
|.+.+ ...++.| .+++..+++.++.++.|+.++.+.. ---+++.-....+....+.++.+-+.++.
T Consensus 151 Gtp~h----~~yviagr~t~g~elATeEQi~r~velaes~Gk~~yv~pa-dv~s~VaDmg~lvtav~l~gvldyy~Vg~q 225 (340)
T COG4007 151 GTPQH----GHYVIAGRSTEGKELATEEQIERCVELAESTGKEVYVLPA-DVVSAVADMGVLVTAVALSGVLDYYYVGTQ 225 (340)
T ss_pred CCCCC----ceEEEeccCCCceeeccHHHHHHHHHHHHhcCCceEecCH-HHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33221 1122222 3578899999999999998776553 11122222222333344455555555544
Q ss_pred HcCCCHHH
Q 018506 250 SLGISAST 257 (355)
Q Consensus 250 ~~Gi~~~~ 257 (355)
-.|.+.+.
T Consensus 226 Ii~AP~eM 233 (340)
T COG4007 226 IIGAPKEM 233 (340)
T ss_pred HhCCcHHH
Confidence 34444443
|
|
| >PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.1e-07 Score=72.29 Aligned_cols=93 Identities=22% Similarity=0.219 Sum_probs=75.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCCcchhhH
Q 018506 221 GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLM 300 (355)
Q Consensus 221 g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (355)
..|+..|++.|.+.++.+++++|...+|++.|+|..++.+++.....- ... .+ .=++|++..++
T Consensus 2 ~~AEl~K~~~N~~~a~~iaf~Nel~~lce~~giD~~~V~~~~~~d~ri---~~~------~~-------~pg~g~GG~Cl 65 (96)
T PF00984_consen 2 EEAELIKYAENAFRATKIAFANELARLCEKLGIDVYEVIEAANTDPRI---GPH------YL-------RPGPGFGGSCL 65 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHHHHHTSTTT---TSS------S--------S-SSS--SSCH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHccCccc---ccc------cC-------CCCCCCCCcch
Confidence 468999999999999999999999999999999999999999864211 100 00 11246888999
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 018506 301 AKDLNLALASAKEVGVDCPLTSQAQDIYA 329 (355)
Q Consensus 301 ~kd~~~~~~~a~~~gv~~pi~~~~~~~~~ 329 (355)
.||...+...+++.|.+.++++++.+.-+
T Consensus 66 pkD~~~L~~~~~~~g~~~~ll~~~~~~N~ 94 (96)
T PF00984_consen 66 PKDPYALIYLAKELGYPPQLLEAVININE 94 (96)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHcCCCHHHHHHHHHhcC
Confidence 99999999999999999999999887654
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A .... |
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.6e-08 Score=90.98 Aligned_cols=109 Identities=19% Similarity=0.237 Sum_probs=87.4
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
..-+++||||+|.+|.++|+++..-|.+|..|+|++. -+.....+....+ ++|+++++|+|.+.+|...+...++...
T Consensus 144 l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~-~~~~~~~~~~y~~-l~ell~~sDii~l~~Plt~~T~hLin~~ 221 (324)
T COG1052 144 LRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN-PEAEKELGARYVD-LDELLAESDIISLHCPLTPETRHLINAE 221 (324)
T ss_pred CCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC-hHHHhhcCceecc-HHHHHHhCCEEEEeCCCChHHhhhcCHH
Confidence 4458999999999999999999977889999999876 2222334455555 9999999999999999998888877643
Q ss_pred CccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 123 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
.++.++ ++.++||++-+..-..+.+.+.+.+
T Consensus 222 --~l~~mk--~ga~lVNtaRG~~VDe~ALi~AL~~ 252 (324)
T COG1052 222 --ELAKMK--PGAILVNTARGGLVDEQALIDALKS 252 (324)
T ss_pred --HHHhCC--CCeEEEECCCccccCHHHHHHHHHh
Confidence 455433 6789999999997777888888765
|
|
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.4e-08 Score=94.37 Aligned_cols=116 Identities=16% Similarity=0.163 Sum_probs=89.8
Q ss_pred cccCCC--CCCCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCC
Q 018506 34 RFFSSQ--VPSCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPS 111 (355)
Q Consensus 34 ~~~~~~--~~~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~ 111 (355)
.|.+.. .....-++|||||+|++|..+|+.+..-|.+|.+||+++.. ...++....+++++++.||+|++++|.
T Consensus 138 ~w~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~----~~~~~~~~~~l~ell~~sDiVslh~Pl 213 (409)
T PRK11790 138 GWNKSAAGSFEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKL----PLGNARQVGSLEELLAQSDVVSLHVPE 213 (409)
T ss_pred cccccccCcccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCccc----ccCCceecCCHHHHHhhCCEEEEcCCC
Confidence 566442 22345689999999999999999999999999999986432 112344556899999999999999998
Q ss_pred chHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 112 SSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 112 ~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
..+.+.++... .++.+ .++.++||++.+..-..+.+.+.+.+
T Consensus 214 t~~T~~li~~~--~l~~m--k~ga~lIN~aRG~~vde~aL~~aL~~ 255 (409)
T PRK11790 214 TPSTKNMIGAE--ELALM--KPGAILINASRGTVVDIDALADALKS 255 (409)
T ss_pred ChHHhhccCHH--HHhcC--CCCeEEEECCCCcccCHHHHHHHHHc
Confidence 88888776532 45543 36789999999988777888888865
|
|
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.74 E-value=3e-08 Score=94.09 Aligned_cols=106 Identities=19% Similarity=0.189 Sum_probs=80.5
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCch----HHHHH
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSS----HVLDV 118 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~----~~~~v 118 (355)
..-++|||||+|+||+.+++.|...|++|.+||+..... .+.....++++++++||+|++++|... ....+
T Consensus 114 l~gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~-----~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~l 188 (381)
T PRK00257 114 LAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEA-----EGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHL 188 (381)
T ss_pred cCcCEEEEECCCHHHHHHHHHHHHCCCEEEEECCccccc-----ccCccccCHHHHHhhCCEEEEeCcCCCCcccccccc
Confidence 345789999999999999999999999999999754321 122234589999999999999999754 24444
Q ss_pred hcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 119 YNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 119 l~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
+.. ..++.+ .++.++||++.+..-..+.+.+.+.+
T Consensus 189 i~~--~~l~~m--k~gailIN~aRG~vVde~AL~~aL~~ 223 (381)
T PRK00257 189 LDE--AFLASL--RPGAWLINASRGAVVDNQALREALLS 223 (381)
T ss_pred CCH--HHHhcC--CCCeEEEECCCCcccCHHHHHHHHHh
Confidence 432 244443 36789999999998888888887754
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.2e-08 Score=90.31 Aligned_cols=76 Identities=17% Similarity=0.196 Sum_probs=63.6
Q ss_pred CCceEEEEccc-HHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 44 QFESVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~G-~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
.-.+|+|||.| .||.+|+..|.++|++|++|++... ++.+++++||+||++++.+..++.++
T Consensus 158 ~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~--------------~l~e~~~~ADIVIsavg~~~~v~~~~--- 220 (301)
T PRK14194 158 TGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST--------------DAKALCRQADIVVAAVGRPRLIDADW--- 220 (301)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC--------------CHHHHHhcCCEEEEecCChhcccHhh---
Confidence 44789999996 9999999999999999999987532 78899999999999999986666543
Q ss_pred CccccCCCCCCCeEEEEcCCCC
Q 018506 123 NGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~ 144 (355)
++ +|.++||++.+.
T Consensus 221 ---ik-----~GaiVIDvgin~ 234 (301)
T PRK14194 221 ---LK-----PGAVVIDVGINR 234 (301)
T ss_pred ---cc-----CCcEEEEecccc
Confidence 32 567999998754
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.8e-08 Score=83.63 Aligned_cols=101 Identities=15% Similarity=0.200 Sum_probs=73.2
Q ss_pred EEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCC--------------CCHHHHhhcCCEEEEeCCCch
Q 018506 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK--------------ETPFEVAEASDVVITMLPSSS 113 (355)
Q Consensus 48 IgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~--------------~s~~e~~~~aDiVi~~v~~~~ 113 (355)
|+|+|+|.||..+|..|+++|++|+++.|++ +.+.+++.|+... .+..+..+..|+||+|++..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~- 78 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKAY- 78 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSGG-
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEeccc-
Confidence 7899999999999999999999999999988 8888777654321 11224567899999999975
Q ss_pred HHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHh
Q 018506 114 HVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVS 156 (355)
Q Consensus 114 ~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~ 156 (355)
++++++..+.+.+. ++..|+...++.. ..+.+.+.++
T Consensus 79 ~~~~~l~~l~~~~~-----~~t~iv~~qNG~g-~~~~l~~~~~ 115 (151)
T PF02558_consen 79 QLEQALQSLKPYLD-----PNTTIVSLQNGMG-NEEVLAEYFP 115 (151)
T ss_dssp GHHHHHHHHCTGEE-----TTEEEEEESSSSS-HHHHHHCHST
T ss_pred chHHHHHHHhhccC-----CCcEEEEEeCCCC-cHHHHHHHcC
Confidence 77888887777764 3345665555543 2355555543
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.71 E-value=9.3e-08 Score=86.98 Aligned_cols=103 Identities=17% Similarity=0.168 Sum_probs=73.0
Q ss_pred CceEEEEcccHHhHHHHHHHHHC--CCc-EEEEeCChhHHHHHHh-CCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhc
Q 018506 45 FESVGFIGLGNMGFRMASNLMKA--GYK-MAVHDVNCNVMKMFSD-MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYN 120 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~--G~~-V~v~dr~~~~~~~l~~-~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~ 120 (355)
||||||||+|.||..++..|.+. +++ +.+|||++++.+.+.+ .+....++.++++.++|+|++|.|.. ...+...
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~-~~~~~~~ 79 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASVN-AVEEVVP 79 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChH-HHHHHHH
Confidence 48999999999999999999876 355 5688999999888765 45666788999888999999999854 5555543
Q ss_pred CCCccccCCCCCCCeEEEEcCCC---CHHHHHHHHHHHh
Q 018506 121 GPNGLLQGGNSVRPQLLIDSSTI---DPQTSRNISAAVS 156 (355)
Q Consensus 121 ~~~~~l~~~~~~~~~ivi~~st~---~~~~~~~l~~~~~ 156 (355)
. .++. ++-++.+|.. .+...+++.+...
T Consensus 80 ~---al~~-----Gk~Vvv~s~gAl~d~~~~~~L~~aA~ 110 (265)
T PRK13304 80 K---SLEN-----GKDVIIMSVGALADKELFLKLYKLAK 110 (265)
T ss_pred H---HHHc-----CCCEEEEchHHhcCHHHHHHHHHHHH
Confidence 3 3332 2334445442 3444555555543
|
|
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.4e-07 Score=79.06 Aligned_cols=129 Identities=12% Similarity=0.137 Sum_probs=88.0
Q ss_pred ceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCCc
Q 018506 46 ESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNG 124 (355)
Q Consensus 46 mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~~ 124 (355)
|||+|||. |.||..++..|.++||+|+ +.++|+||+|+|-. .+.+++.++.
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~--------------------------~~~~DlVilavPv~-~~~~~i~~~~- 52 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVY--------------------------IKKADHAFLSVPID-AALNYIESYD- 52 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEE--------------------------ECCCCEEEEeCCHH-HHHHHHHHhC-
Confidence 69999988 9999999999999999986 25899999999964 6666665421
Q ss_pred cccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcC--ceEEEec--CCHHHH
Q 018506 125 LLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAG--TLTFMVG--GSEDAY 200 (355)
Q Consensus 125 ~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g--~~~~~~g--g~~~~~ 200 (355)
.+++|.++++... .+.. + -.+-.+|++|... +..+ ...+++. .+++..
T Consensus 53 ----------~~v~Dv~SvK~~i----~~~~---------~----~~vg~HPMfGp~~-a~~~lf~~~iv~~~~~~~~~~ 104 (197)
T PRK06444 53 ----------NNFVEISSVKWPF----KKYS---------G----KIVSIHPLFGPMS-YNDGVHRTVIFINDISRDNYL 104 (197)
T ss_pred ----------CeEEeccccCHHH----HHhc---------C----CEEecCCCCCCCc-CcccccceEEEECCCCCHHHH
Confidence 2788999988642 2211 0 1233467777322 2221 2233332 356677
Q ss_pred HHHHHHHHHcCCCeEEeCCcchHHHHHHHHHH
Q 018506 201 QAAKPLFLSMGKNTIYCGGAGNGAAAKICNNL 232 (355)
Q Consensus 201 ~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~ 232 (355)
+.++++++ |.+++.+.+......+-.++.+
T Consensus 105 ~~~~~l~~--G~~~~~~t~eeHD~~~A~ishL 134 (197)
T PRK06444 105 NEINEMFR--GYHFVEMTADEHDLLMSEIMVK 134 (197)
T ss_pred HHHHHHHc--CCEEEEeCHHHHHHHHHHHHHH
Confidence 88999998 7778888876666666555444
|
|
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=98.71 E-value=4e-08 Score=80.81 Aligned_cols=81 Identities=23% Similarity=0.281 Sum_probs=59.0
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh-HHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHh-cCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN-VMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVY-NGP 122 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~-~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl-~~~ 122 (355)
..+|+|||.|..|.+.|.+|.++|.+|.+..|..+ ..+...+.|..+. +..|+++.+|+|++.+|+. ...+++ +.+
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~-~~~eAv~~aDvV~~L~PD~-~q~~vy~~~I 81 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVM-SVAEAVKKADVVMLLLPDE-VQPEVYEEEI 81 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECC-EHHHHHHC-SEEEE-S-HH-HHHHHHHHHH
T ss_pred CCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeec-cHHHHHhhCCEEEEeCChH-HHHHHHHHHH
Confidence 47899999999999999999999999999988766 5666677887664 8899999999999999975 445555 444
Q ss_pred Ccccc
Q 018506 123 NGLLQ 127 (355)
Q Consensus 123 ~~~l~ 127 (355)
.+.++
T Consensus 82 ~p~l~ 86 (165)
T PF07991_consen 82 APNLK 86 (165)
T ss_dssp HHHS-
T ss_pred HhhCC
Confidence 44443
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=9.7e-08 Score=89.15 Aligned_cols=109 Identities=12% Similarity=0.203 Sum_probs=84.7
Q ss_pred CCCceEEEEcccHHhHHHHHHHH-HCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcC
Q 018506 43 CQFESVGFIGLGNMGFRMASNLM-KAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 121 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~-~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~ 121 (355)
..-+++||||+|++|..+|+.+. .-|.+|.+|+|.... +.....+... .+++++++.||+|++++|...+.+.++..
T Consensus 143 L~gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~-~~~~~~~~~~-~~l~ell~~sDvv~lh~plt~~T~~li~~ 220 (323)
T PRK15409 143 VHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHK-EAEERFNARY-CDLDTLLQESDFVCIILPLTDETHHLFGA 220 (323)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCch-hhHHhcCcEe-cCHHHHHHhCCEEEEeCCCChHHhhccCH
Confidence 45589999999999999999997 778899999986432 1122334443 48999999999999999998888887753
Q ss_pred CCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 122 PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 122 ~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
. .++.++ ++.++||++-+..-....+.+.+.+
T Consensus 221 ~--~l~~mk--~ga~lIN~aRG~vVde~AL~~AL~~ 252 (323)
T PRK15409 221 E--QFAKMK--SSAIFINAGRGPVVDENALIAALQK 252 (323)
T ss_pred H--HHhcCC--CCeEEEECCCccccCHHHHHHHHHc
Confidence 2 555433 6789999999987777788888764
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.3e-07 Score=82.25 Aligned_cols=92 Identities=18% Similarity=0.280 Sum_probs=66.6
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC-CCCCCCCHHHHh-hcCCEEEEeCCCchHHHHHhc
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPTKETPFEVA-EASDVVITMLPSSSHVLDVYN 120 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~-g~~~~~s~~e~~-~~aDiVi~~v~~~~~~~~vl~ 120 (355)
...++|+|+|+|+||..+++.|.+.|++|+++|+++++++.+.+. +....++ .++. .++|+++-|.......++.+.
T Consensus 26 l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~~-~~l~~~~~Dv~vp~A~~~~I~~~~~~ 104 (200)
T cd01075 26 LEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAP-EEIYSVDADVFAPCALGGVINDDTIP 104 (200)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEcc-hhhccccCCEEEecccccccCHHHHH
Confidence 355789999999999999999999999999999999998888764 5544433 4444 379999977544323333332
Q ss_pred CCCccccCCCCCCCeEEEEcCCCCH
Q 018506 121 GPNGLLQGGNSVRPQLLIDSSTIDP 145 (355)
Q Consensus 121 ~~~~~l~~~~~~~~~ivi~~st~~~ 145 (355)
.+ +.++|+...+...
T Consensus 105 ~l----------~~~~v~~~AN~~~ 119 (200)
T cd01075 105 QL----------KAKAIAGAANNQL 119 (200)
T ss_pred Hc----------CCCEEEECCcCcc
Confidence 21 3358888777643
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.1e-07 Score=87.38 Aligned_cols=95 Identities=20% Similarity=0.264 Sum_probs=71.9
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCC--CCHHHHhhcCCEEEEeCCCchHHHHHhcC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK--ETPFEVAEASDVVITMLPSSSHVLDVYNG 121 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~--~s~~e~~~~aDiVi~~v~~~~~~~~vl~~ 121 (355)
...+|+|||+|.||..+++.|...|.+|++++|++++.+.+.+.+.... .++.+.++++|+||.++|.....++.+
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~ii~~~~l-- 227 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPALVLTADVL-- 227 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChHHhCHHHH--
Confidence 4478999999999999999999999999999999988777766555432 356778889999999998652112222
Q ss_pred CCccccCCCCCCCeEEEEcCCCCHHH
Q 018506 122 PNGLLQGGNSVRPQLLIDSSTIDPQT 147 (355)
Q Consensus 122 ~~~~l~~~~~~~~~ivi~~st~~~~~ 147 (355)
+. ..++.+++|+++.+-.+
T Consensus 228 -----~~--~k~~aliIDlas~Pg~t 246 (287)
T TIGR02853 228 -----SK--LPKHAVIIDLASKPGGT 246 (287)
T ss_pred -----hc--CCCCeEEEEeCcCCCCC
Confidence 21 12467999999976443
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.1e-07 Score=88.41 Aligned_cols=106 Identities=17% Similarity=0.176 Sum_probs=83.5
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
..-++|||||+|++|+.+|+.+..-|.+|.+|||..... +.+.. ..+++++++.||+|++++|.....+.++...
T Consensus 143 L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~----~~~~~-~~~l~ell~~sDvv~lh~Plt~~T~~li~~~ 217 (311)
T PRK08410 143 IKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK----NEEYE-RVSLEELLKTSDIISIHAPLNEKTKNLIAYK 217 (311)
T ss_pred cCCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc----ccCce-eecHHHHhhcCCEEEEeCCCCchhhcccCHH
Confidence 455889999999999999999999999999999864321 12332 3489999999999999999888877766542
Q ss_pred CccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 123 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
.++.++ ++.++||++-+..-..+.+.+.+.+
T Consensus 218 --~~~~Mk--~~a~lIN~aRG~vVDe~AL~~AL~~ 248 (311)
T PRK08410 218 --ELKLLK--DGAILINVGRGGIVNEKDLAKALDE 248 (311)
T ss_pred --HHHhCC--CCeEEEECCCccccCHHHHHHHHHc
Confidence 454433 6789999999987777788887764
|
|
| >PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.8e-07 Score=87.03 Aligned_cols=105 Identities=16% Similarity=0.149 Sum_probs=82.4
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
..-++|||||+|.+|..+|+.+..-|.+|.+|++.... .. .. ...+++++++.||+|++++|-....+..+...
T Consensus 145 l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~--~~---~~-~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~ 218 (314)
T PRK06932 145 VRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS--VC---RE-GYTPFEEVLKQADIVTLHCPLTETTQNLINAE 218 (314)
T ss_pred cCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc--cc---cc-ccCCHHHHHHhCCEEEEcCCCChHHhcccCHH
Confidence 45579999999999999999999999999999986421 11 11 13589999999999999999888887766542
Q ss_pred CccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 123 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
.++.+ .++.++||++-+..-....+.+.+.+
T Consensus 219 --~l~~m--k~ga~lIN~aRG~~Vde~AL~~aL~~ 249 (314)
T PRK06932 219 --TLALM--KPTAFLINTGRGPLVDEQALLDALEN 249 (314)
T ss_pred --HHHhC--CCCeEEEECCCccccCHHHHHHHHHc
Confidence 45543 36789999999987777788887764
|
|
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.9e-07 Score=87.05 Aligned_cols=104 Identities=14% Similarity=0.143 Sum_probs=82.3
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
..-.+|||||+|.+|..+|+.+..-|.+|.+|+|.... .... ..+++++++.||+|++++|...+.+.++...
T Consensus 146 l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~------~~~~-~~~l~ell~~sDiv~l~lPlt~~T~~li~~~ 218 (317)
T PRK06487 146 LEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRP------ARPD-RLPLDELLPQVDALTLHCPLTEHTRHLIGAR 218 (317)
T ss_pred cCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCc------cccc-ccCHHHHHHhCCEEEECCCCChHHhcCcCHH
Confidence 44578999999999999999999999999999986321 1112 3489999999999999999888887766543
Q ss_pred CccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 123 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
.++.+ .++.++||++-+..-....+.+.+.+
T Consensus 219 --~~~~m--k~ga~lIN~aRG~vVde~AL~~AL~~ 249 (317)
T PRK06487 219 --ELALM--KPGALLINTARGGLVDEQALADALRS 249 (317)
T ss_pred --HHhcC--CCCeEEEECCCccccCHHHHHHHHHc
Confidence 45543 36789999999887776778887764
|
|
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.5e-07 Score=89.11 Aligned_cols=106 Identities=17% Similarity=0.206 Sum_probs=78.0
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchH----HHHH
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSH----VLDV 118 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~----~~~v 118 (355)
...++|||||+|+||+.+|+.|...|.+|.+||+..... ... ....++++++++||+|++.+|-... ...+
T Consensus 114 L~gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~----~~~-~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~l 188 (378)
T PRK15438 114 LHDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADR----GDE-GDFRSLDELVQEADILTFHTPLFKDGPYKTLHL 188 (378)
T ss_pred cCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCccccc----ccc-cccCCHHHHHhhCCEEEEeCCCCCCcccccccc
Confidence 355799999999999999999999999999999743211 111 1345899999999999999985432 3333
Q ss_pred hcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 119 YNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 119 l~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
+.. +.++.+ .++.++||++-+..-..+.+.+.+.+
T Consensus 189 i~~--~~l~~m--k~gailIN~aRG~vVDe~AL~~aL~~ 223 (378)
T PRK15438 189 ADE--KLIRSL--KPGAILINACRGAVVDNTALLTCLNE 223 (378)
T ss_pred cCH--HHHhcC--CCCcEEEECCCchhcCHHHHHHHHHh
Confidence 322 234432 36789999999987777888887754
|
|
| >KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.5e-07 Score=85.31 Aligned_cols=109 Identities=17% Similarity=0.185 Sum_probs=88.6
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPN 123 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~ 123 (355)
.-.+|||+|+|.+|..+|++|...|..+..+.|++.+.+...+.+.. ..+.++.+.++|+|++|+|...++..++...
T Consensus 161 ~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~-~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~- 238 (336)
T KOG0069|consen 161 EGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAE-FVDIEELLANSDVIVVNCPLTKETRHLINKK- 238 (336)
T ss_pred cCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhccc-ccCHHHHHhhCCEEEEecCCCHHHHHHhhHH-
Confidence 34789999999999999999999995566667887777666665555 4588899999999999999999999988753
Q ss_pred ccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 124 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 124 ~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
.+.+++ ++.++||++-+..-.-+.+.+.+.+
T Consensus 239 -~~~~mk--~g~vlVN~aRG~iide~~l~eaL~s 269 (336)
T KOG0069|consen 239 -FIEKMK--DGAVLVNTARGAIIDEEALVEALKS 269 (336)
T ss_pred -HHHhcC--CCeEEEeccccccccHHHHHHHHhc
Confidence 666544 6789999999987777778887764
|
|
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.8e-07 Score=87.22 Aligned_cols=101 Identities=11% Similarity=0.053 Sum_probs=73.0
Q ss_pred CCceEEEEcccHHhHHHHHHHHH--CCCcEEEEeCChhHHHHHHhC----C--CCCCCCHHHHhhcCCEEEEeCCCchHH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMK--AGYKMAVHDVNCNVMKMFSDM----G--VPTKETPFEVAEASDVVITMLPSSSHV 115 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~--~G~~V~v~dr~~~~~~~l~~~----g--~~~~~s~~e~~~~aDiVi~~v~~~~~~ 115 (355)
...+|+|||+|.||..++..+.. ...+|++|||++++.+.+.+. + +..+.++++++.++|+|+.+++..
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~--- 200 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST--- 200 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC---
Confidence 34789999999999999986664 347899999999998887663 4 445678999999999998888765
Q ss_pred HHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHH
Q 018506 116 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAV 155 (355)
Q Consensus 116 ~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~ 155 (355)
+.++.. .+++ +++ +|++.+..+...+++...+
T Consensus 201 ~pvl~~--~~l~-----~g~-~i~~ig~~~~~~~El~~~~ 232 (314)
T PRK06141 201 EPLVRG--EWLK-----PGT-HLDLVGNFTPDMRECDDEA 232 (314)
T ss_pred CCEecH--HHcC-----CCC-EEEeeCCCCcccccCCHHH
Confidence 233321 2332 344 6777777666666665544
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.6e-07 Score=84.47 Aligned_cols=76 Identities=16% Similarity=0.135 Sum_probs=62.7
Q ss_pred CCCceEEEEc-ccHHhHHHHHHHHHCCCcEEEEe-CChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhc
Q 018506 43 CQFESVGFIG-LGNMGFRMASNLMKAGYKMAVHD-VNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYN 120 (355)
Q Consensus 43 ~~~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~d-r~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~ 120 (355)
..-.+|+||| .|.||.+||.+|.++|++|++|+ |++ +++++++++|+||+|++.+..++.++
T Consensus 156 ~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~---------------~l~e~~~~ADIVIsavg~~~~v~~~~- 219 (296)
T PRK14188 156 LSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR---------------DLPAVCRRADILVAAVGRPEMVKGDW- 219 (296)
T ss_pred CCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC---------------CHHHHHhcCCEEEEecCChhhcchhe-
Confidence 3457899999 99999999999999999999995 654 46888899999999999986655532
Q ss_pred CCCccccCCCCCCCeEEEEcCCCC
Q 018506 121 GPNGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 121 ~~~~~l~~~~~~~~~ivi~~st~~ 144 (355)
++ +|.++||++...
T Consensus 220 -----lk-----~GavVIDvGin~ 233 (296)
T PRK14188 220 -----IK-----PGATVIDVGINR 233 (296)
T ss_pred -----ec-----CCCEEEEcCCcc
Confidence 32 567999998754
|
|
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=98.50 E-value=6.1e-07 Score=85.59 Aligned_cols=111 Identities=16% Similarity=0.169 Sum_probs=83.2
Q ss_pred CCCceEEEEcccHHhHHHHHHHH-HCCCcEEEEeCChhH-HHHH-HhCC------------CCCCCCHHHHhhcCCEEEE
Q 018506 43 CQFESVGFIGLGNMGFRMASNLM-KAGYKMAVHDVNCNV-MKMF-SDMG------------VPTKETPFEVAEASDVVIT 107 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~-~~G~~V~v~dr~~~~-~~~l-~~~g------------~~~~~s~~e~~~~aDiVi~ 107 (355)
..-++|||||+|.+|+.+|+.|. .-|.+|.+||+++.. .+.. ...+ .....+++++++.||+|++
T Consensus 163 L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~l 242 (386)
T PLN02306 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISL 242 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEE
Confidence 45688999999999999999986 678999999987642 1111 1111 1224589999999999999
Q ss_pred eCCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 108 MLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 108 ~v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
++|-....+.++... .++.++ ++.++||++-+..-....+.+.+.+
T Consensus 243 h~Plt~~T~~lin~~--~l~~MK--~ga~lIN~aRG~lVDe~AL~~AL~s 288 (386)
T PLN02306 243 HPVLDKTTYHLINKE--RLALMK--KEAVLVNASRGPVIDEVALVEHLKA 288 (386)
T ss_pred eCCCChhhhhhcCHH--HHHhCC--CCeEEEECCCccccCHHHHHHHHHh
Confidence 999887887776642 455433 6789999999887666778777754
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=98.50 E-value=8.7e-07 Score=81.89 Aligned_cols=94 Identities=18% Similarity=0.269 Sum_probs=72.2
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCC--CCHHHHhhcCCEEEEeCCCchHHHHHhcC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK--ETPFEVAEASDVVITMLPSSSHVLDVYNG 121 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~--~s~~e~~~~aDiVi~~v~~~~~~~~vl~~ 121 (355)
...|++|||.|.+|..++..|...|.+|++++|++++.+...+.|.... .+..+.+.++|+||.++|.....++.+.
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~~~i~~~~l~- 229 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPALVLTKEVLS- 229 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCChhhhhHHHHH-
Confidence 3478999999999999999999999999999999988777777776543 3567788899999999986422233222
Q ss_pred CCccccCCCCCCCeEEEEcCCCCHH
Q 018506 122 PNGLLQGGNSVRPQLLIDSSTIDPQ 146 (355)
Q Consensus 122 ~~~~l~~~~~~~~~ivi~~st~~~~ 146 (355)
.+ .++.+++|+++....
T Consensus 230 ---~~-----~~g~vIIDla~~pgg 246 (296)
T PRK08306 230 ---KM-----PPEALIIDLASKPGG 246 (296)
T ss_pred ---cC-----CCCcEEEEEccCCCC
Confidence 12 245799999887644
|
|
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=98.40 E-value=5.3e-06 Score=65.81 Aligned_cols=104 Identities=24% Similarity=0.399 Sum_probs=77.3
Q ss_pred ceEEEEcccHHhHHHHHHHHHCC--CcE-EEEeCChhHHHHHHh-CCCCCCCCHHHHhh--cCCEEEEeCCCchHHHHHh
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAG--YKM-AVHDVNCNVMKMFSD-MGVPTKETPFEVAE--ASDVVITMLPSSSHVLDVY 119 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G--~~V-~v~dr~~~~~~~l~~-~g~~~~~s~~e~~~--~aDiVi~~v~~~~~~~~vl 119 (355)
+||||||+|.+|......+.+.. .++ .++|+++++.+.+.+ .+....+|.+++++ +.|+|++++|+....+-+.
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~~ 80 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAEIAK 80 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHHHHH
Confidence 58999999999999999999873 454 588999999988754 67888899999987 7999999999886655544
Q ss_pred cCCCccccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhh
Q 018506 120 NGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSN 157 (355)
Q Consensus 120 ~~~~~~l~~~~~~~~~ivi~~-st~~~~~~~~l~~~~~~ 157 (355)
. .++. +-.++++- -...+++.+++.+...+
T Consensus 81 ~----~l~~----g~~v~~EKP~~~~~~~~~~l~~~a~~ 111 (120)
T PF01408_consen 81 K----ALEA----GKHVLVEKPLALTLEEAEELVEAAKE 111 (120)
T ss_dssp H----HHHT----TSEEEEESSSSSSHHHHHHHHHHHHH
T ss_pred H----HHHc----CCEEEEEcCCcCCHHHHHHHHHHHHH
Confidence 3 3322 12466653 23356777777776653
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.6e-06 Score=72.44 Aligned_cols=92 Identities=16% Similarity=0.227 Sum_probs=69.7
Q ss_pred ceEEEEcccHHhHHHHHHHHHC--CCc-EEEEeCChhHHHHHHh-CCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcC
Q 018506 46 ESVGFIGLGNMGFRMASNLMKA--GYK-MAVHDVNCNVMKMFSD-MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 121 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~--G~~-V~v~dr~~~~~~~l~~-~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~ 121 (355)
|+||+||+|.+|..+...+.+. +++ +.+|||+.+++..+.+ .+....++++|.+...|+++-|-. ++++++...+
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS-~~Av~e~~~~ 79 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAAS-PEAVREYVPK 79 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCC-HHHHHHHhHH
Confidence 6899999999999999988754 344 7899999999988776 455556899999999999999985 5688876654
Q ss_pred CCccccCCCCCCCeEEEEcCCCC
Q 018506 122 PNGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 122 ~~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.|+. ..+.+|+..+...
T Consensus 80 ---~L~~---g~d~iV~SVGALa 96 (255)
T COG1712 80 ---ILKA---GIDVIVMSVGALA 96 (255)
T ss_pred ---HHhc---CCCEEEEechhcc
Confidence 4543 2344555555444
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=98.38 E-value=8.2e-07 Score=82.75 Aligned_cols=94 Identities=20% Similarity=0.312 Sum_probs=67.2
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCC-CcEEEEeCChhHHHHHHh-CCCCCC--CCHHHHhhcCCEEEEeCCCchHHHHHh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCNVMKMFSD-MGVPTK--ETPFEVAEASDVVITMLPSSSHVLDVY 119 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G-~~V~v~dr~~~~~~~l~~-~g~~~~--~s~~e~~~~aDiVi~~v~~~~~~~~vl 119 (355)
..++|+|||+|.||..+++.|...| ++|+++||++++...+.+ .|.... ++..+++..+|+||.|++.+.. ..++
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~-~~~~ 255 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHY-AKIV 255 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCch-HHHH
Confidence 4589999999999999999999865 689999999999877765 344322 3456777899999999988754 2222
Q ss_pred cCCCccccCCCCCCCeEEEEcCC
Q 018506 120 NGPNGLLQGGNSVRPQLLIDSST 142 (355)
Q Consensus 120 ~~~~~~l~~~~~~~~~ivi~~st 142 (355)
.. .+... ..++.+++|.+.
T Consensus 256 ~~---~~~~~-~~~~~~viDlav 274 (311)
T cd05213 256 ER---AMKKR-SGKPRLIVDLAV 274 (311)
T ss_pred HH---HHhhC-CCCCeEEEEeCC
Confidence 21 11110 114568999984
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.5e-06 Score=80.95 Aligned_cols=65 Identities=23% Similarity=0.267 Sum_probs=49.4
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHH----hC----C--CC--CCCCHHHHhhcCCEEEEeCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFS----DM----G--VP--TKETPFEVAEASDVVITMLP 110 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~----~~----g--~~--~~~s~~e~~~~aDiVi~~v~ 110 (355)
||||+|||+|.||..+|..++..|+ +|.++|+++++.+... +. + .. .+++. +.+++||+||+++.
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~ 79 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAG 79 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCC
Confidence 5899999999999999999999876 9999999887654321 11 1 11 23344 56789999999963
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=98.34 E-value=8.6e-07 Score=72.18 Aligned_cols=70 Identities=23% Similarity=0.261 Sum_probs=57.7
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCc-EEEEeCChhHHHHHHhC--C----CCCCCCHHHHhhcCCEEEEeCCCch
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYK-MAVHDVNCNVMKMFSDM--G----VPTKETPFEVAEASDVVITMLPSSS 113 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~-V~v~dr~~~~~~~l~~~--g----~~~~~s~~e~~~~aDiVi~~v~~~~ 113 (355)
...++.|||+|.+|++++..|.+.|.+ |++++|+.++++.+.+. + ....++..+.+.++|+||.|+|.+.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~ 87 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGM 87 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCC
Confidence 558899999999999999999999987 99999999999888763 1 1234566677889999999998763
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.6e-06 Score=78.69 Aligned_cols=76 Identities=17% Similarity=0.219 Sum_probs=62.1
Q ss_pred CCceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 44 QFESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
.-.+|+|||. |.||.+|+..|.++|++|++|+.. +.++++.+++||+||++++.+..++..
T Consensus 157 ~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~--------------t~~l~~~~~~ADIVI~avg~~~~v~~~---- 218 (284)
T PRK14179 157 EGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR--------------TRNLAEVARKADILVVAIGRGHFVTKE---- 218 (284)
T ss_pred CCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC--------------CCCHHHHHhhCCEEEEecCccccCCHH----
Confidence 3478999999 999999999999999999999421 236888999999999999998666553
Q ss_pred CccccCCCCCCCeEEEEcCCCC
Q 018506 123 NGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~ 144 (355)
+++ +|.++||++...
T Consensus 219 --~ik-----~GavVIDvgin~ 233 (284)
T PRK14179 219 --FVK-----EGAVVIDVGMNR 233 (284)
T ss_pred --Hcc-----CCcEEEEeccee
Confidence 332 567999998664
|
|
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.4e-06 Score=80.11 Aligned_cols=92 Identities=18% Similarity=0.218 Sum_probs=67.5
Q ss_pred CceEEEEcccHHhHHHHHHHHH--CCCcEEEEeCChhHHHHHHh----CC--CCCCCCHHHHhhcCCEEEEeCCCchHHH
Q 018506 45 FESVGFIGLGNMGFRMASNLMK--AGYKMAVHDVNCNVMKMFSD----MG--VPTKETPFEVAEASDVVITMLPSSSHVL 116 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~--~G~~V~v~dr~~~~~~~l~~----~g--~~~~~s~~e~~~~aDiVi~~v~~~~~~~ 116 (355)
..++||||+|.+|...+..|.. ...+|.+|||++++.+.+.+ .+ +..+.+++++++++|+|++|+|+.+
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~~--- 204 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSRK--- 204 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCCC---
Confidence 4789999999999998777764 34579999999999887654 24 3457899999999999999998752
Q ss_pred HHhcCCCccccCCCCCCCeEEEEcCCCCHH
Q 018506 117 DVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ 146 (355)
Q Consensus 117 ~vl~~~~~~l~~~~~~~~~ivi~~st~~~~ 146 (355)
.++. ..+++ ++..|...++..|.
T Consensus 205 P~~~--~~~l~-----~g~~v~~vGs~~p~ 227 (325)
T TIGR02371 205 PVVK--ADWVS-----EGTHINAIGADAPG 227 (325)
T ss_pred cEec--HHHcC-----CCCEEEecCCCCcc
Confidence 2221 11332 45567667666664
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.5e-06 Score=78.24 Aligned_cols=66 Identities=18% Similarity=0.201 Sum_probs=50.4
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHH----HhC--------CCCCCCCHHHHhhcCCEEEEeCCCc
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMF----SDM--------GVPTKETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l----~~~--------g~~~~~s~~e~~~~aDiVi~~v~~~ 112 (355)
|||+|||+|.||..+|..|+..|+ +|+++|++++..+.. .+. .+..+.+.++ +++||+||++++.+
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~p 80 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGLP 80 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCCC
Confidence 799999999999999999999887 899999976654311 111 1233456665 68999999998743
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.8e-06 Score=77.61 Aligned_cols=104 Identities=15% Similarity=0.106 Sum_probs=70.2
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC----CCCCCCCHHHH-hhcCCEEEEeCCCch--HHHH
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM----GVPTKETPFEV-AEASDVVITMLPSSS--HVLD 117 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~----g~~~~~s~~e~-~~~aDiVi~~v~~~~--~~~~ 117 (355)
.+++.|+|+|.+|.+++..|++.|++|++++|++++++.+.+. +.....+..+. ..++|+||.|+|... .++.
T Consensus 117 ~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~~~ 196 (270)
T TIGR00507 117 NQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNIDE 196 (270)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCCCC
Confidence 4689999999999999999999999999999999988777652 21122233332 357999999998641 1111
Q ss_pred HhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHh
Q 018506 118 VYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVS 156 (355)
Q Consensus 118 vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~ 156 (355)
+... ...+ .++.+++|+++.++.+ .+.+...
T Consensus 197 ~~~~-~~~l-----~~~~~v~D~~y~p~~T--~ll~~A~ 227 (270)
T TIGR00507 197 PPVP-AEKL-----KEGMVVYDMVYNPGET--PFLAEAK 227 (270)
T ss_pred CCCC-HHHc-----CCCCEEEEeccCCCCC--HHHHHHH
Confidence 1000 0112 2457999999988765 3444443
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >COG5495 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.28 E-value=5.5e-05 Score=65.37 Aligned_cols=192 Identities=14% Similarity=0.084 Sum_probs=124.6
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEE-EEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMA-VHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPN 123 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~-v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~ 123 (355)
.+.++|||.|..|.+...+-.+.++.+. +..|++++++.+.+.-+-...+.+...+-.+++|+.+|+. ....+...
T Consensus 10 ~v~~~~vgtgrl~ra~~~ra~h~~~~cs~i~srS~~~a~~LaE~~~a~p~d~~~~ael~~~vfv~vpd~-~~s~vaa~-- 86 (289)
T COG5495 10 RVVVGIVGTGRLGRAALLRADHVVVACSAISSRSRDRAQNLAETYVAPPLDVAKSAELLLLVFVDVPDA-LYSGVAAT-- 86 (289)
T ss_pred eeEEEEeecchHHHHHHHHhcchheeehhhhhcCHHHHhhchhccCCCccchhhChhhhceEEecchHH-HHHHHHHh--
Confidence 4789999999999995555555555554 4478999998887743332334444445678888889875 33333221
Q ss_pred ccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCC---CCCChHHHh--cCceEEEecCCHH
Q 018506 124 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAP---VSGGVLAAE--AGTLTFMVGGSED 198 (355)
Q Consensus 124 ~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p---v~g~~~~~~--~g~~~~~~gg~~~ 198 (355)
.+ ..+++++++||...... |.+.+.+ .|. +..--.| .+|...... +++...+..+|+.
T Consensus 87 -~~----~rpg~iv~HcSga~~~~---il~~~gr------~g~---~~asiHP~f~Fsgl~edl~rl~d~~~~i~eaD~~ 149 (289)
T COG5495 87 -SL----NRPGTIVAHCSGANGSG---ILAPLGR------QGC---IPASIHPAFSFSGLDEDLSRLKDTIFGITEADDV 149 (289)
T ss_pred -cc----cCCCeEEEEccCCCchh---hhhhhhh------cCC---cceeecccccccCCHHHHHhCcccEEEeeccccc
Confidence 12 34678999998876442 3333332 221 1111123 335555554 4555555567877
Q ss_pred HHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Q 018506 199 AYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISAST 257 (355)
Q Consensus 199 ~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~ 257 (355)
-...++++...+|.+++.+-+ +.-..+..+.|...+.....+.|+..+-+..|+|..+
T Consensus 150 g~ai~q~la~emgg~~f~V~~-~~r~lYHaaa~~asnf~v~~l~~a~~i~~aag~Dq~e 207 (289)
T COG5495 150 GYAIVQSLALEMGGEPFCVRE-EARILYHAAAVHASNFIVTVLADALEIYRAAGDDQPE 207 (289)
T ss_pred ccHHHHHHHHHhCCCceeech-hHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCCcc
Confidence 888899999999998777666 4555566666666666777889999999999988433
|
|
| >TIGR01921 DAP-DH diaminopimelate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.9e-05 Score=73.17 Aligned_cols=74 Identities=14% Similarity=0.220 Sum_probs=55.0
Q ss_pred CCceEEEEcccHHhHHHHHHHHHC-CCcEE-EEeCCh-hHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKA-GYKMA-VHDVNC-NVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVY 119 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~-G~~V~-v~dr~~-~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl 119 (355)
+++||+|||+|+||...+..+.+. +.++. +|+|++ +++. ...+.....+..++..+.|+|++|+|+....+.+.
T Consensus 2 ~kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~--~~~~v~~~~d~~e~l~~iDVViIctPs~th~~~~~ 78 (324)
T TIGR01921 2 SKIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLD--TETPVYAVADDEKHLDDVDVLILCMGSATDIPEQA 78 (324)
T ss_pred CCcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHh--hcCCccccCCHHHhccCCCEEEEcCCCccCHHHHH
Confidence 458999999999999999999875 67765 679985 4433 12344445567777788999999999876655544
|
This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized. |
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.15 E-value=1e-05 Score=76.48 Aligned_cols=101 Identities=15% Similarity=0.234 Sum_probs=73.0
Q ss_pred CceEEEEcccHHhHHHHHHHHHCC-CcEEEEeCChhHHHHHHhCC---C-------CCCCCHHHHhhcCCEEEEeCCCch
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDMG---V-------PTKETPFEVAEASDVVITMLPSSS 113 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G-~~V~v~dr~~~~~~~l~~~g---~-------~~~~s~~e~~~~aDiVi~~v~~~~ 113 (355)
||||-|||+|.+|+.+|..|+++| ++|++-||+.++++++.+.. + .-.+.+.+++++.|+||.|.|...
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~ 80 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFV 80 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchh
Confidence 689999999999999999999999 89999999999999887642 1 112345678889999999999764
Q ss_pred HHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHH
Q 018506 114 HVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAV 155 (355)
Q Consensus 114 ~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~ 155 (355)
.. .++.. .++ .+.-++|+|...+.. ..+.+..
T Consensus 81 ~~-~i~ka---~i~-----~gv~yvDts~~~~~~-~~~~~~a 112 (389)
T COG1748 81 DL-TILKA---CIK-----TGVDYVDTSYYEEPP-WKLDEEA 112 (389)
T ss_pred hH-HHHHH---HHH-----hCCCEEEcccCCchh-hhhhHHH
Confidence 43 33321 121 344577776666553 4444433
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=98.15 E-value=9.4e-06 Score=65.01 Aligned_cols=99 Identities=23% Similarity=0.355 Sum_probs=64.1
Q ss_pred ceEEEEcc-cHHhHHHHHHHHH-CCCcE-EEEeCChh-HH----HHH---HhCCCCCCCCHHHHhhcCCEEEEeCCCchH
Q 018506 46 ESVGFIGL-GNMGFRMASNLMK-AGYKM-AVHDVNCN-VM----KMF---SDMGVPTKETPFEVAEASDVVITMLPSSSH 114 (355)
Q Consensus 46 mkIgiIG~-G~mG~~ia~~L~~-~G~~V-~v~dr~~~-~~----~~l---~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~ 114 (355)
|||+|+|+ |+||+.+++.+.+ .++++ .+++|+++ .. ..+ ...++.+.++++++++.+|+||-.. .++.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT-~p~~ 79 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT-NPDA 79 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES--HHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC-ChHH
Confidence 79999999 9999999999998 67784 56688762 11 111 1346777899999999999999887 4566
Q ss_pred HHHHhcCCCccccCCCCCCCeEEEEcCCCCH-HHHHHHHH
Q 018506 115 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDP-QTSRNISA 153 (355)
Q Consensus 115 ~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~-~~~~~l~~ 153 (355)
+.+.++. .++ .+.-+|..+|+.. +..+.+.+
T Consensus 80 ~~~~~~~---~~~-----~g~~~ViGTTG~~~~~~~~l~~ 111 (124)
T PF01113_consen 80 VYDNLEY---ALK-----HGVPLVIGTTGFSDEQIDELEE 111 (124)
T ss_dssp HHHHHHH---HHH-----HT-EEEEE-SSSHHHHHHHHHH
T ss_pred hHHHHHH---HHh-----CCCCEEEECCCCCHHHHHHHHH
Confidence 6665543 232 2345666666664 44444444
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.3e-05 Score=77.54 Aligned_cols=93 Identities=16% Similarity=0.138 Sum_probs=69.6
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
..-.+|+|||.|.+|..+|..|...|.+|+++++++.+.......|+.. .+.+++++.+|+|++++.+...+..
T Consensus 252 LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~-~~leell~~ADIVI~atGt~~iI~~----- 325 (476)
T PTZ00075 252 IAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQV-VTLEDVVETADIFVTATGNKDIITL----- 325 (476)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCcee-ccHHHHHhcCCEEEECCCcccccCH-----
Confidence 3457899999999999999999999999999999988765444456543 4788999999999999765433221
Q ss_pred CccccCCCCCCCeEEEEcCCCC
Q 018506 123 NGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~ 144 (355)
..+..+ .++.+++|.+...
T Consensus 326 -e~~~~M--KpGAiLINvGr~d 344 (476)
T PTZ00075 326 -EHMRRM--KNNAIVGNIGHFD 344 (476)
T ss_pred -HHHhcc--CCCcEEEEcCCCc
Confidence 122221 2567999998875
|
|
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.9e-05 Score=71.47 Aligned_cols=101 Identities=17% Similarity=0.218 Sum_probs=68.3
Q ss_pred CceEEEEcc-cHHhHHHHHHHHHC-CCcEE-EEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcC
Q 018506 45 FESVGFIGL-GNMGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 121 (355)
Q Consensus 45 ~mkIgiIG~-G~mG~~ia~~L~~~-G~~V~-v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~ 121 (355)
+|||+|+|+ |.||..++..+.+. ++++. ++|+++++.......++...++++++++++|+|+.+.+.. ...+++..
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~p~-~~~~~~~~ 79 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTTPE-ATLENLEF 79 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCCHH-HHHHHHHH
Confidence 489999998 99999999998864 57754 6898887665443345666788988888899999787643 44444432
Q ss_pred CCccccCCCCCCCeEEEEcCCCCHHHHHHHHH
Q 018506 122 PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISA 153 (355)
Q Consensus 122 ~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~ 153 (355)
.++. +-.+++-++..+++..+++.+
T Consensus 80 ---al~~----G~~vvigttG~s~~~~~~l~~ 104 (257)
T PRK00048 80 ---ALEH----GKPLVIGTTGFTEEQLAELEE 104 (257)
T ss_pred ---HHHc----CCCEEEECCCCCHHHHHHHHH
Confidence 3332 113555544445666666655
|
|
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.1e-05 Score=73.04 Aligned_cols=93 Identities=17% Similarity=0.173 Sum_probs=69.2
Q ss_pred CCceEEEEcccHHhHHHHHHHHH-CC-CcEEEEeCChhHHHHHHhC----CCCC-CCCHHHHhhcCCEEEEeCCCchHHH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMK-AG-YKMAVHDVNCNVMKMFSDM----GVPT-KETPFEVAEASDVVITMLPSSSHVL 116 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~-~G-~~V~v~dr~~~~~~~l~~~----g~~~-~~s~~e~~~~aDiVi~~v~~~~~~~ 116 (355)
...+|+|||+|.+|...+..+.. .+ .+|.+|+|++++.+.+.+. +... ..+.++++.++|+|+.|+|...
T Consensus 124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~~--- 200 (304)
T PRK07340 124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSRT--- 200 (304)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCCC---
Confidence 34689999999999999999975 45 4699999999998877652 2232 4688889999999999999763
Q ss_pred HHhcCCCccccCCCCCCCeEEEEcCCCCHHH
Q 018506 117 DVYNGPNGLLQGGNSVRPQLLIDSSTIDPQT 147 (355)
Q Consensus 117 ~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~ 147 (355)
.++.. ++ .+|..|...++..|..
T Consensus 201 Pl~~~---~~-----~~g~hi~~iGs~~p~~ 223 (304)
T PRK07340 201 PVYPE---AA-----RAGRLVVAVGAFTPDM 223 (304)
T ss_pred ceeCc---cC-----CCCCEEEecCCCCCCc
Confidence 22321 23 2566777777766653
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=98.08 E-value=9.1e-06 Score=80.37 Aligned_cols=69 Identities=26% Similarity=0.313 Sum_probs=57.2
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHhC--CCC----CCCCHHHHhhcCCEEEEeCCCc
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM--GVP----TKETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~~--g~~----~~~s~~e~~~~aDiVi~~v~~~ 112 (355)
...+|+|||+|.||..++..|...|. +|++++|++++++.+.+. +.. ..++..+++.++|+||.|++.+
T Consensus 265 ~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s~ 340 (519)
T PLN00203 265 ASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSSE 340 (519)
T ss_pred CCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCCC
Confidence 45789999999999999999999996 699999999999888763 221 2346677888999999998655
|
|
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=2e-05 Score=70.45 Aligned_cols=75 Identities=17% Similarity=0.254 Sum_probs=60.4
Q ss_pred CceEEEEcccHHhHHHHHHHHHCC---Cc-EEEEeCChhHHHHHHhCCCCCCCCHHHH-hhcCCEEEEeCCCchHHHHHh
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAG---YK-MAVHDVNCNVMKMFSDMGVPTKETPFEV-AEASDVVITMLPSSSHVLDVY 119 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G---~~-V~v~dr~~~~~~~l~~~g~~~~~s~~e~-~~~aDiVi~~v~~~~~~~~vl 119 (355)
.+||||||+|.||..++..|.+.+ ++ +.+++|++++.+.+.+. ....++++++ ...+|+|+-|-. ++.+++..
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~-~~~~~~l~~ll~~~~DlVVE~A~-~~av~e~~ 79 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGR-VALLDGLPGLLAWRPDLVVEAAG-QQAIAEHA 79 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhcc-CcccCCHHHHhhcCCCEEEECCC-HHHHHHHH
Confidence 479999999999999999997643 45 45678988888888765 7788899996 688999999986 46777765
Q ss_pred cC
Q 018506 120 NG 121 (355)
Q Consensus 120 ~~ 121 (355)
..
T Consensus 80 ~~ 81 (267)
T PRK13301 80 EG 81 (267)
T ss_pred HH
Confidence 44
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=98.08 E-value=3.5e-05 Score=73.72 Aligned_cols=100 Identities=16% Similarity=0.121 Sum_probs=74.2
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHH-HhcCC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLD-VYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~-vl~~~ 122 (355)
...+|+|+|+|.+|..++..+...|.+|+++++++.+.......|.... +.+++++.+|+||.++.+...+.. .+.
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~-~leeal~~aDVVItaTG~~~vI~~~~~~-- 270 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAKIGDIFITATGNKDVIRGEHFE-- 270 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeC-CHHHHHhcCCEEEECCCCHHHHHHHHHh--
Confidence 4568999999999999999999999999999999988766666666443 567888999999999876544443 221
Q ss_pred CccccCCCCCCCeEEEEcCCCCH-HHHHHHHH
Q 018506 123 NGLLQGGNSVRPQLLIDSSTIDP-QTSRNISA 153 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~~-~~~~~l~~ 153 (355)
.+ .++.++++.+.... -....+.+
T Consensus 271 --~m-----K~GailiN~G~~~~eId~~aL~~ 295 (406)
T TIGR00936 271 --NM-----KDGAIVANIGHFDVEIDVKALEE 295 (406)
T ss_pred --cC-----CCCcEEEEECCCCceeCHHHHHH
Confidence 22 25568888887654 23344444
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.7e-05 Score=74.97 Aligned_cols=92 Identities=20% Similarity=0.167 Sum_probs=70.6
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHH-HhcCC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLD-VYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~-vl~~~ 122 (355)
.-.+|+|+|+|.+|..++..|...|.+|+++|+++.+.......|... .+.+++++.+|+||.++.+...+.. .+.
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v-~~l~eal~~aDVVI~aTG~~~vI~~~~~~-- 287 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRV-MTMEEAAELGDIFVTATGNKDVITAEHME-- 287 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEe-cCHHHHHhCCCEEEECCCCHHHHHHHHHh--
Confidence 457899999999999999999999999999999998876655566653 4678889999999999866544432 222
Q ss_pred CccccCCCCCCCeEEEEcCCCCH
Q 018506 123 NGLLQGGNSVRPQLLIDSSTIDP 145 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~~ 145 (355)
.+ .++.++++.+....
T Consensus 288 --~m-----K~GailiNvG~~d~ 303 (425)
T PRK05476 288 --AM-----KDGAILANIGHFDN 303 (425)
T ss_pred --cC-----CCCCEEEEcCCCCC
Confidence 22 25568888877653
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.3e-05 Score=74.65 Aligned_cols=67 Identities=19% Similarity=0.255 Sum_probs=50.9
Q ss_pred ceEEEEcccHHhHHHHHHHHHCC--CcEEEEeCChhHHHH----HHhCC-----CCCCCCHHHHhhcCCEEEEeCCCc
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAG--YKMAVHDVNCNVMKM----FSDMG-----VPTKETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G--~~V~v~dr~~~~~~~----l~~~g-----~~~~~s~~e~~~~aDiVi~~v~~~ 112 (355)
|||+|||+|.+|.++|..|+..| ++|.++|+++++++. +.... ....++..+.+++||+||++++.+
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~l~~aDiViita~~~ 78 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYADCKGADVVVITAGAN 78 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHHhCCCCEEEEccCCC
Confidence 68999999999999999999999 589999999877653 32211 011123345678999999998754
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.4e-05 Score=70.85 Aligned_cols=74 Identities=19% Similarity=0.269 Sum_probs=55.8
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh--CCCCC---C----CCHHHH-hhcCCEEEEeCCCchHH
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD--MGVPT---K----ETPFEV-AEASDVVITMLPSSSHV 115 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~--~g~~~---~----~s~~e~-~~~aDiVi~~v~~~~~~ 115 (355)
|+|.|||+|.+|..+|+.|.+.||+|++.+++++++++..+ ....+ - +.+.++ +.++|+++.++.++ .+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d-~~ 79 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGND-EV 79 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCC-HH
Confidence 78999999999999999999999999999999999988544 32211 1 123333 46789999998765 44
Q ss_pred HHHhc
Q 018506 116 LDVYN 120 (355)
Q Consensus 116 ~~vl~ 120 (355)
..++.
T Consensus 80 N~i~~ 84 (225)
T COG0569 80 NSVLA 84 (225)
T ss_pred HHHHH
Confidence 44443
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.3e-05 Score=73.22 Aligned_cols=65 Identities=20% Similarity=0.229 Sum_probs=49.1
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCC-CcEEEEeCChhHHHHH----Hh----CC----CCCCCCHHHHhhcCCEEEEeC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCNVMKMF----SD----MG----VPTKETPFEVAEASDVVITML 109 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G-~~V~v~dr~~~~~~~l----~~----~g----~~~~~s~~e~~~~aDiVi~~v 109 (355)
+.+||+|||+|.||..++..++..| .++.++|+++++++.. .. .+ +..+.+.+ ++++||+||++.
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita 81 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA 81 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence 4579999999999999999999988 6899999988654321 11 11 12234444 779999999998
|
|
| >COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.2e-05 Score=70.65 Aligned_cols=82 Identities=27% Similarity=0.318 Sum_probs=65.7
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhH-HHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhc-C
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNV-MKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYN-G 121 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~-~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~-~ 121 (355)
+..||+|||.|+-|.+-|.+|.++|.+|++--|.... .+...+.|.. +.+.+|+++.+|+|++.+|+. .-.+++. .
T Consensus 17 kgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~-V~~v~ea~k~ADvim~L~PDe-~q~~vy~~~ 94 (338)
T COG0059 17 KGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFK-VYTVEEAAKRADVVMILLPDE-QQKEVYEKE 94 (338)
T ss_pred cCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCE-eecHHHHhhcCCEEEEeCchh-hHHHHHHHH
Confidence 4468999999999999999999999999877775544 5555666766 458999999999999999986 4456666 5
Q ss_pred CCcccc
Q 018506 122 PNGLLQ 127 (355)
Q Consensus 122 ~~~~l~ 127 (355)
+.+.++
T Consensus 95 I~p~Lk 100 (338)
T COG0059 95 IAPNLK 100 (338)
T ss_pred hhhhhc
Confidence 566665
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=98.02 E-value=4.3e-05 Score=73.92 Aligned_cols=100 Identities=14% Similarity=0.156 Sum_probs=72.7
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHH-HHHhcCC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV-LDVYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~-~~vl~~~ 122 (355)
.-.+|+|+|+|.+|..+|+.+...|.+|+++++++.+.......|.... +.+++++.+|+||.+..+...+ ...+.
T Consensus 253 aGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv-~leEal~~ADVVI~tTGt~~vI~~e~L~-- 329 (477)
T PLN02494 253 AGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVL-TLEDVVSEADIFVTTTGNKDIIMVDHMR-- 329 (477)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeec-cHHHHHhhCCEEEECCCCccchHHHHHh--
Confidence 3478999999999999999999999999999999887655555666544 6788899999999987654332 33332
Q ss_pred CccccCCCCCCCeEEEEcCCCC-HHHHHHHHH
Q 018506 123 NGLLQGGNSVRPQLLIDSSTID-PQTSRNISA 153 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~-~~~~~~l~~ 153 (355)
.+ .++.++++.+... .-....+.+
T Consensus 330 --~M-----K~GAiLiNvGr~~~eID~~aL~~ 354 (477)
T PLN02494 330 --KM-----KNNAIVCNIGHFDNEIDMLGLET 354 (477)
T ss_pred --cC-----CCCCEEEEcCCCCCccCHHHHhh
Confidence 22 2556999998843 333334443
|
|
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.1e-05 Score=65.24 Aligned_cols=92 Identities=17% Similarity=0.202 Sum_probs=62.8
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHH-HHHhcCCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV-LDVYNGPN 123 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~-~~vl~~~~ 123 (355)
-+++.|+|.|..|+.+|+.|...|-.|++++++|-++-+....|..+. +.++++..+|++|.++-....+ .+.+.
T Consensus 23 Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~-~~~~a~~~adi~vtaTG~~~vi~~e~~~--- 98 (162)
T PF00670_consen 23 GKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVM-TLEEALRDADIFVTATGNKDVITGEHFR--- 98 (162)
T ss_dssp TSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE--HHHHTTT-SEEEE-SSSSSSB-HHHHH---
T ss_pred CCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEec-CHHHHHhhCCEEEECCCCccccCHHHHH---
Confidence 367999999999999999999999999999999988766666787754 7899999999999987654221 12222
Q ss_pred ccccCCCCCCCeEEEEcCCCCHH
Q 018506 124 GLLQGGNSVRPQLLIDSSTIDPQ 146 (355)
Q Consensus 124 ~~l~~~~~~~~~ivi~~st~~~~ 146 (355)
.+ +++.++.+.+....+
T Consensus 99 -~m-----kdgail~n~Gh~d~E 115 (162)
T PF00670_consen 99 -QM-----KDGAILANAGHFDVE 115 (162)
T ss_dssp -HS------TTEEEEESSSSTTS
T ss_pred -Hh-----cCCeEEeccCcCcee
Confidence 12 256788877765544
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases | Back alignment and domain information |
|---|
Probab=97.99 E-value=7.6e-06 Score=79.45 Aligned_cols=66 Identities=20% Similarity=0.338 Sum_probs=52.3
Q ss_pred ceEEEEcccHHhHHHHH--HH----HHCCCcEEEEeCChhHHHHHHhC------------CCCCCCCHHHHhhcCCEEEE
Q 018506 46 ESVGFIGLGNMGFRMAS--NL----MKAGYKMAVHDVNCNVMKMFSDM------------GVPTKETPFEVAEASDVVIT 107 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~--~L----~~~G~~V~v~dr~~~~~~~l~~~------------g~~~~~s~~e~~~~aDiVi~ 107 (355)
+||+|||+|.||.+++. .+ ..+|++|.+||+++++++..... .+..+++..+++++||+||+
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~ 80 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVIN 80 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEE
Confidence 58999999999998665 34 45578999999999887664331 13346788899999999999
Q ss_pred eCCC
Q 018506 108 MLPS 111 (355)
Q Consensus 108 ~v~~ 111 (355)
+++.
T Consensus 81 ai~~ 84 (423)
T cd05297 81 TIQV 84 (423)
T ss_pred eeEe
Confidence 9975
|
linked to 3D####ucture |
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=97.99 E-value=9e-06 Score=77.64 Aligned_cols=82 Identities=18% Similarity=0.254 Sum_probs=61.9
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCC------hhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHH
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVN------CNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVL 116 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~------~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~ 116 (355)
..-++|+|||+|..|.+.|.+|...|++|++--|. ...-+.+.+.|..+ .++.|+++.||+|++.+|+. .-.
T Consensus 34 LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v-~~~~Ea~~~ADvVviLlPDt-~q~ 111 (487)
T PRK05225 34 LKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV-GTYEELIPQADLVINLTPDK-QHS 111 (487)
T ss_pred hCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCcc-CCHHHHHHhCCEEEEcCChH-HHH
Confidence 45589999999999999999999999999954443 33445555567755 68999999999999999987 444
Q ss_pred HHhcCCCccc
Q 018506 117 DVYNGPNGLL 126 (355)
Q Consensus 117 ~vl~~~~~~l 126 (355)
.+...+.+.+
T Consensus 112 ~v~~~i~p~L 121 (487)
T PRK05225 112 DVVRAVQPLM 121 (487)
T ss_pred HHHHHHHhhC
Confidence 4444433444
|
|
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=97.97 E-value=2e-05 Score=62.87 Aligned_cols=93 Identities=18% Similarity=0.189 Sum_probs=57.2
Q ss_pred eEEEEc-ccHHhHHHHHHHHHC-CCcEEEE-eCChhHHHHHHhCC--CC-C---CCCHHHH-hhcCCEEEEeCCCchHHH
Q 018506 47 SVGFIG-LGNMGFRMASNLMKA-GYKMAVH-DVNCNVMKMFSDMG--VP-T---KETPFEV-AEASDVVITMLPSSSHVL 116 (355)
Q Consensus 47 kIgiIG-~G~mG~~ia~~L~~~-G~~V~v~-dr~~~~~~~l~~~g--~~-~---~~s~~e~-~~~aDiVi~~v~~~~~~~ 116 (355)
||+||| .|.+|..++..|.+. ++++..+ +++.++.+.+...+ +. . ..+..+. ..++|+||+|+|+....+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~ 80 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVSKE 80 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHHHH
Confidence 699999 599999999999985 7776654 66544433333322 11 0 0111111 248999999999874444
Q ss_pred HHhcCCCccccCCCCCCCeEEEEcCCCCH
Q 018506 117 DVYNGPNGLLQGGNSVRPQLLIDSSTIDP 145 (355)
Q Consensus 117 ~vl~~~~~~l~~~~~~~~~ivi~~st~~~ 145 (355)
++... ... ..+|+++||+|+...
T Consensus 81 -~~~~~---~~~--~~~g~~viD~s~~~~ 103 (122)
T smart00859 81 -IAPLL---PKA--AEAGVKVIDLSSAFR 103 (122)
T ss_pred -HHHHH---Hhh--hcCCCEEEECCcccc
Confidence 33211 111 125689999998753
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.9e-05 Score=73.46 Aligned_cols=67 Identities=21% Similarity=0.272 Sum_probs=51.4
Q ss_pred ceEEEEcccHHhHHHHHHHHHCC--CcEEEEeCChhHHHHHHhC--------C--CCCCCCHHHHhhcCCEEEEeCCCc
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAG--YKMAVHDVNCNVMKMFSDM--------G--VPTKETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G--~~V~v~dr~~~~~~~l~~~--------g--~~~~~s~~e~~~~aDiVi~~v~~~ 112 (355)
+||+|||+|.+|.+++..|+..| ++|.++|+++++++.+... + ........+.++++|+||++...+
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~ 79 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAP 79 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCC
Confidence 48999999999999999999999 6899999999887654431 1 112223345578999999998653
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.5e-05 Score=77.29 Aligned_cols=70 Identities=21% Similarity=0.273 Sum_probs=56.8
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCC-CcEEEEeCChhHHHHHHh-CCCC--CCCCHHHHhhcCCEEEEeCCCch
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCNVMKMFSD-MGVP--TKETPFEVAEASDVVITMLPSSS 113 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G-~~V~v~dr~~~~~~~l~~-~g~~--~~~s~~e~~~~aDiVi~~v~~~~ 113 (355)
...+|+|||+|.||..++..|...| .+|++++|++++++.+.+ .+.. ...+..+++..+|+||.|++.+.
T Consensus 179 ~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s~~ 252 (417)
T TIGR01035 179 KGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGAPH 252 (417)
T ss_pred cCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCCCC
Confidence 3478999999999999999999999 789999999998877765 3322 22456677889999999987664
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=9.5e-05 Score=67.28 Aligned_cols=74 Identities=14% Similarity=0.159 Sum_probs=51.0
Q ss_pred CceEEEEcccHHhHHHHHHHHHC-CCcE-EEEeCC--hhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHh
Q 018506 45 FESVGFIGLGNMGFRMASNLMKA-GYKM-AVHDVN--CNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVY 119 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~-G~~V-~v~dr~--~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl 119 (355)
||||||||+|.||..+++.+.+. +.++ .++++. .++.......+...+++.+++..+.|+|+.|.|.. ...+..
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~-~~~e~~ 78 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHA-ALKEHV 78 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHH-HHHHHH
Confidence 58999999999999999999876 4554 344443 22322222235667788887745699999999875 444433
|
|
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=97.93 E-value=5.2e-05 Score=71.16 Aligned_cols=68 Identities=15% Similarity=0.194 Sum_probs=56.2
Q ss_pred CceEEEEcccHHhHHHHHHHHH-CC-CcEEEEeCChhHHHHHHhC-----CCC--CCCCHHHHhhcCCEEEEeCCCc
Q 018506 45 FESVGFIGLGNMGFRMASNLMK-AG-YKMAVHDVNCNVMKMFSDM-----GVP--TKETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~-~G-~~V~v~dr~~~~~~~l~~~-----g~~--~~~s~~e~~~~aDiVi~~v~~~ 112 (355)
..+++|||+|.+|...+..|.. .+ .+|++|+|++++.+.+.+. ++. ..+++++++.++|+|+.|+|..
T Consensus 129 ~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~ 205 (326)
T TIGR02992 129 SSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSE 205 (326)
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCC
Confidence 3689999999999999999974 55 3699999999998887652 433 3578889999999999999875
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=97.93 E-value=7.1e-05 Score=71.92 Aligned_cols=90 Identities=14% Similarity=0.162 Sum_probs=70.4
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHH-hcCC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDV-YNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~v-l~~~ 122 (355)
.-.+|+|+|+|.+|..++..+...|.+|+++|+++.+.+.....|+... +.++++..+|+||.|+.....+..- +.
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~-~~~e~v~~aDVVI~atG~~~~i~~~~l~-- 277 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVM-TMEEAVKEGDIFVTTTGNKDIITGEHFE-- 277 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEc-cHHHHHcCCCEEEECCCCHHHHHHHHHh--
Confidence 3478999999999999999999999999999999999888877887543 4678888999999998766544442 22
Q ss_pred CccccCCCCCCCeEEEEcCCC
Q 018506 123 NGLLQGGNSVRPQLLIDSSTI 143 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~ 143 (355)
.++ ++.++++.+..
T Consensus 278 --~mk-----~GgilvnvG~~ 291 (413)
T cd00401 278 --QMK-----DGAIVCNIGHF 291 (413)
T ss_pred --cCC-----CCcEEEEeCCC
Confidence 222 45588887754
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=97.92 E-value=3.3e-05 Score=71.64 Aligned_cols=62 Identities=24% Similarity=0.318 Sum_probs=46.4
Q ss_pred EEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHH----HHhC--------CCCCCCCHHHHhhcCCEEEEeCC
Q 018506 48 VGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKM----FSDM--------GVPTKETPFEVAEASDVVITMLP 110 (355)
Q Consensus 48 IgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~----l~~~--------g~~~~~s~~e~~~~aDiVi~~v~ 110 (355)
|+|||+|.||..+|..|+..|+ +|+++|+++++.+. +.+. .+..+.+ .+.+++||+||+++.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d-~~~l~dADiVIit~g 75 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTND-YEDIAGSDVVVITAG 75 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCC-HHHhCCCCEEEEecC
Confidence 6899999999999999998877 99999999876431 1111 1122344 456789999999874
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.92 E-value=6.7e-05 Score=73.98 Aligned_cols=90 Identities=18% Similarity=0.271 Sum_probs=66.0
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC-CCCCC--CCHHHHhhcCCEEEEeCCCchHHHHHhc
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPTK--ETPFEVAEASDVVITMLPSSSHVLDVYN 120 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~-g~~~~--~s~~e~~~~aDiVi~~v~~~~~~~~vl~ 120 (355)
..++++|+|+|.+|.+++..|.+.|++|++++|++++++.+.+. +.... .+..+ +.++|+||.|+|....+..
T Consensus 331 ~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~~-l~~~DiVInatP~g~~~~~--- 406 (477)
T PRK09310 331 NNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLPE-LHRIDIIINCLPPSVTIPK--- 406 (477)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhcc-cCCCCEEEEcCCCCCcchh---
Confidence 44789999999999999999999999999999999988877653 21111 12222 4689999999997643211
Q ss_pred CCCccccCCCCCCCeEEEEcCCCCHHHH
Q 018506 121 GPNGLLQGGNSVRPQLLIDSSTIDPQTS 148 (355)
Q Consensus 121 ~~~~~l~~~~~~~~~ivi~~st~~~~~~ 148 (355)
.+ . .+++|+...++.+.
T Consensus 407 ----~l------~-~~v~D~~Y~P~~T~ 423 (477)
T PRK09310 407 ----AF------P-PCVVDINTLPKHSP 423 (477)
T ss_pred ----HH------h-hhEEeccCCCCCCH
Confidence 11 1 38999999876653
|
|
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=97.92 E-value=1.5e-05 Score=65.38 Aligned_cols=66 Identities=23% Similarity=0.317 Sum_probs=50.5
Q ss_pred ceEEEEcc-cHHhHHHHHHHHHCCC--cEEEEeCChhHHHHHHh--------C--CCCCCCCHHHHhhcCCEEEEeCCC
Q 018506 46 ESVGFIGL-GNMGFRMASNLMKAGY--KMAVHDVNCNVMKMFSD--------M--GVPTKETPFEVAEASDVVITMLPS 111 (355)
Q Consensus 46 mkIgiIG~-G~mG~~ia~~L~~~G~--~V~v~dr~~~~~~~l~~--------~--g~~~~~s~~e~~~~aDiVi~~v~~ 111 (355)
|||+|||+ |.+|..++..|...+. ++.++|+++++++.... . .........+.+++||+||++.-.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~ 79 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGV 79 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTST
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEeccc
Confidence 79999999 9999999999998874 79999999876543321 1 123334566777899999998643
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=2.5e-05 Score=75.38 Aligned_cols=71 Identities=10% Similarity=0.115 Sum_probs=58.1
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHhC-C-CC--CCCCHHHHhhcCCEEEEeCCCchH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-G-VP--TKETPFEVAEASDVVITMLPSSSH 114 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~~-g-~~--~~~s~~e~~~~aDiVi~~v~~~~~ 114 (355)
...||.|||+|.||..++..|.+.|. ++++++|++++++.+.+. + .. ..++..+.+.++|+||.|++.+..
T Consensus 180 ~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~~~ 255 (414)
T PRK13940 180 SSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVLEY 255 (414)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCCCe
Confidence 34789999999999999999999995 699999999999888773 2 22 234556778899999999987743
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.90 E-value=2.9e-05 Score=73.96 Aligned_cols=69 Identities=25% Similarity=0.344 Sum_probs=58.6
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCC-CcEEEEeCChhHHHHHHh-CCC--CCCCCHHHHhhcCCEEEEeCCCc
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCNVMKMFSD-MGV--PTKETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G-~~V~v~dr~~~~~~~l~~-~g~--~~~~s~~e~~~~aDiVi~~v~~~ 112 (355)
...++.|||+|.||.-.|++|..+| ..|++.||+.++++.+++ .++ ...++..+.+.++|+||+++..+
T Consensus 177 ~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa~ 249 (414)
T COG0373 177 KDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSAP 249 (414)
T ss_pred ccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCCC
Confidence 5578999999999999999999999 579999999999999887 443 33456677889999999997655
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.90 E-value=2.7e-05 Score=75.76 Aligned_cols=70 Identities=23% Similarity=0.287 Sum_probs=56.7
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHh-CCCCC--CCCHHHHhhcCCEEEEeCCCch
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSD-MGVPT--KETPFEVAEASDVVITMLPSSS 113 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~-~g~~~--~~s~~e~~~~aDiVi~~v~~~~ 113 (355)
...+|+|||+|.||..++..|...|. +|++++|++++++.+.+ .|... ..+..+.+..+|+||.|++.+.
T Consensus 181 ~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~~ 254 (423)
T PRK00045 181 SGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAPH 254 (423)
T ss_pred cCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCCC
Confidence 44789999999999999999999997 79999999999887765 34322 2345567789999999998764
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=97.89 E-value=6.9e-05 Score=63.16 Aligned_cols=77 Identities=18% Similarity=0.243 Sum_probs=59.2
Q ss_pred CCCceEEEEcccHH-hHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcC
Q 018506 43 CQFESVGFIGLGNM-GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 121 (355)
Q Consensus 43 ~~~mkIgiIG~G~m-G~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~ 121 (355)
....+|.|||.|.| |..++..|.+.|.+|++.+|+. .+..+.+.++|+||.+++.+.. +..
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~--------------~~l~~~l~~aDiVIsat~~~~i----i~~ 103 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT--------------KNLKEHTKQADIVIVAVGKPGL----VKG 103 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc--------------hhHHHHHhhCCEEEEcCCCCce----ecH
Confidence 45688999999997 9999999999999999999973 3566788899999999998632 221
Q ss_pred CCccccCCCCCCCeEEEEcCCCC
Q 018506 122 PNGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 122 ~~~~l~~~~~~~~~ivi~~st~~ 144 (355)
+.++ ++.++||.+...
T Consensus 104 --~~~~-----~~~viIDla~pr 119 (168)
T cd01080 104 --DMVK-----PGAVVIDVGINR 119 (168)
T ss_pred --HHcc-----CCeEEEEccCCC
Confidence 1232 346888887643
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0022 Score=60.31 Aligned_cols=281 Identities=16% Similarity=0.188 Sum_probs=155.3
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHh----C-C--------------------CCCCCCHHHH
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSD----M-G--------------------VPTKETPFEV 98 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~----~-g--------------------~~~~~s~~e~ 98 (355)
|.+|-|+|+|..+.-+|..|.+.+. .|-+++|...+.+.+.+ . + -....+.+++
T Consensus 1 m~~VLI~GtGPvAiQLAv~lk~~~~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~~~~~i 80 (429)
T PF10100_consen 1 MGNVLIVGTGPVAIQLAVILKKHGNCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQDYEEI 80 (429)
T ss_pred CCceEEEcCCHHHHHHHHHHHhccCceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhcCHHHh
Confidence 4579999999999999999998775 59999998777665433 1 1 1224567777
Q ss_pred hhcCCEEEEeCCCchHHHHHhcCCCc-cccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhch----hhhccCCCCCceEE
Q 018506 99 AEASDVVITMLPSSSHVLDVYNGPNG-LLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCI----LKEKKDSWENPVML 173 (355)
Q Consensus 99 ~~~aDiVi~~v~~~~~~~~vl~~~~~-~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~----~~~~~g~~~~~~~~ 173 (355)
..+=|.+|+|||.+ +-.+|+.++.. .+.. .+ .+|..|...-+. .-+...+.... +..-..+..+.++.
T Consensus 81 ~g~WdtlILavtaD-AY~~VL~ql~~~~L~~---vk--~iVLvSPtfGS~-~lv~~~l~~~~~~~EVISFStY~gdTr~~ 153 (429)
T PF10100_consen 81 EGEWDTLILAVTAD-AYLDVLQQLPWEVLKR---VK--SIVLVSPTFGSH-LLVKGFLNDLGPDAEVISFSTYYGDTRWS 153 (429)
T ss_pred cccccEEEEEechH-HHHHHHHhcCHHHHhh---CC--EEEEECcccchH-HHHHHHHHhcCCCceEEEeecccccceec
Confidence 78899999999986 66788887742 3332 22 333333332221 22333332210 00000111122333
Q ss_pred eCC-CCCChHHHhcCceEEEec---CCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHH-------------HHHH-----
Q 018506 174 DAP-VSGGVLAAEAGTLTFMVG---GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAK-------------ICNN----- 231 (355)
Q Consensus 174 ~~p-v~g~~~~~~~g~~~~~~g---g~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~K-------------l~~n----- 231 (355)
+.- ...-...+.+. .+++| ++....+++..+++.+|-.+..+..+=.|+..- ...|
T Consensus 154 d~~~~~~vlt~~vK~--kiYigSt~~~s~~~~~l~~~~~~~gI~~~~~~~pl~AE~rNislYVHpplfmndfsL~aIF~~ 231 (429)
T PF10100_consen 154 DGEQPNRVLTTAVKK--KIYIGSTHSNSPELDKLCRLLAQLGIQLEVMDNPLEAESRNISLYVHPPLFMNDFSLNAIFEE 231 (429)
T ss_pred cCCCcceehhhhhhc--eEEEEeCCCCChHHHHHHHHHHHcCCeEEEeCChHhhhhcccceecCChHhhChhhHHHHhCC
Confidence 321 11111112222 33444 344577889999999996665554432332221 0001
Q ss_pred ------------------HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCC----cc---cccCCCCCCCc-----
Q 018506 232 ------------------LTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSAR----CW---SSDSYNPVPGV----- 281 (355)
Q Consensus 232 ------------------~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~----s~---~~~~~~~~~~~----- 281 (355)
.+..-+.....|++.+..+.|++.=.+++.+++-.-. +- .-+.+...+..
T Consensus 232 ~~~~kYvYKL~PEGPIT~~~I~~M~~lw~Ei~~i~~~l~~~~~NLLkFm~ddNYPV~~eslsr~~Ie~F~~l~~i~QEYL 311 (429)
T PF10100_consen 232 DGVPKYVYKLFPEGPITPTLIRDMVQLWKEIMEILNKLGIEPFNLLKFMNDDNYPVRPESLSRDDIESFEELPAIHQEYL 311 (429)
T ss_pred CCCcceEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhccCCCCCChhhCCHHHHhhhhcCChHHhhHH
Confidence 1111356778899999999999998888888862100 00 00011111100
Q ss_pred --------ccC---CC-CCCCC---C------------CCcchhhHHHH----HHHHHHHHHHhCCCChHHHHHHHHHHH
Q 018506 282 --------MEG---VP-ASRNY---G------------GGFASKLMAKD----LNLALASAKEVGVDCPLTSQAQDIYAK 330 (355)
Q Consensus 282 --------~~~---~~-~~~~~---~------------~~~~~~~~~kd----~~~~~~~a~~~gv~~pi~~~~~~~~~~ 330 (355)
+-+ .| .++.| + +-+.+..+.|+ +..+...|+.+|+++|..+...+.|+.
T Consensus 312 LYVRYtsiLIDPFS~PD~~GrYFDFSAVp~~~i~~d~~g~w~iPRmP~EDy~r~~~i~~la~~l~v~~Ptid~~l~~Ye~ 391 (429)
T PF10100_consen 312 LYVRYTSILIDPFSEPDEQGRYFDFSAVPYKKIFKDEEGLWDIPRMPKEDYYRLKIIQGLARALNVSCPTIDRFLARYES 391 (429)
T ss_pred HHHHhhhheeCCCCCCCCCCCcccccccceeeeeecCCCcccCCCCCHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 000 00 01111 0 01123333322 467789999999999999999999988
Q ss_pred HHHC
Q 018506 331 LCEN 334 (355)
Q Consensus 331 ~~~~ 334 (355)
..++
T Consensus 392 ~l~~ 395 (429)
T PF10100_consen 392 KLSQ 395 (429)
T ss_pred HHHH
Confidence 7764
|
|
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.87 E-value=9.2e-05 Score=68.96 Aligned_cols=93 Identities=17% Similarity=0.245 Sum_probs=68.5
Q ss_pred CCceEEEEcccHHhHHHHHHHHHC--CCcEEEEeCChhHHHHHHh----CCCC--CCCCHHHHhhcCCEEEEeCCCchHH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKA--GYKMAVHDVNCNVMKMFSD----MGVP--TKETPFEVAEASDVVITMLPSSSHV 115 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~--G~~V~v~dr~~~~~~~l~~----~g~~--~~~s~~e~~~~aDiVi~~v~~~~~~ 115 (355)
...+++|||+|..+...++.+... -.+|.+|+|++++.+.+.+ .+.. .+++.+++++++|+|+.|+++.+
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~~-- 204 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSRE-- 204 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCCC--
Confidence 346899999999999999988864 2469999999999887664 2333 36889999999999999998652
Q ss_pred HHHhcCCCccccCCCCCCCeEEEEcCCCCHH
Q 018506 116 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ 146 (355)
Q Consensus 116 ~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~ 146 (355)
.++.. .+++ +|..|...++..|.
T Consensus 205 -P~~~~--~~l~-----~G~hi~~iGs~~p~ 227 (315)
T PRK06823 205 -PLLQA--EDIQ-----PGTHITAVGADSPG 227 (315)
T ss_pred -ceeCH--HHcC-----CCcEEEecCCCCcc
Confidence 22221 2443 45677777766664
|
|
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.87 E-value=8.2e-05 Score=69.82 Aligned_cols=91 Identities=13% Similarity=0.214 Sum_probs=67.3
Q ss_pred CceEEEEcccHHhHHHHHHHHH-CC-CcEEEEeCChhHHHHHHh-----CCC--CCCCCHHHHhhcCCEEEEeCCCchHH
Q 018506 45 FESVGFIGLGNMGFRMASNLMK-AG-YKMAVHDVNCNVMKMFSD-----MGV--PTKETPFEVAEASDVVITMLPSSSHV 115 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~-~G-~~V~v~dr~~~~~~~l~~-----~g~--~~~~s~~e~~~~aDiVi~~v~~~~~~ 115 (355)
..+++|||+|.+|...+..+.. .+ .+|.+|+|++++.+++.+ .++ ....+.++++.++|+|+.|+|...
T Consensus 127 ~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~~-- 204 (325)
T PRK08618 127 AKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAKT-- 204 (325)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCCC--
Confidence 4679999999999999988764 34 469999999999887765 133 346788899999999999998763
Q ss_pred HHHhcCCCccccCCCCCCCeEEEEcCCCCHH
Q 018506 116 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ 146 (355)
Q Consensus 116 ~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~ 146 (355)
.++. .+++ +|+.|+...+..|.
T Consensus 205 -p~i~---~~l~-----~G~hV~~iGs~~p~ 226 (325)
T PRK08618 205 -PVFS---EKLK-----KGVHINAVGSFMPD 226 (325)
T ss_pred -cchH---HhcC-----CCcEEEecCCCCcc
Confidence 2232 2443 45677777766664
|
|
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.86 E-value=5.5e-05 Score=70.98 Aligned_cols=92 Identities=22% Similarity=0.264 Sum_probs=65.9
Q ss_pred CCceEEEEcccHHhHHHHHHHHHC-C-CcEEEEeCChhHHHHHHhC-----C--CCCCCCHHHHhhcCCEEEEeCCCchH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKA-G-YKMAVHDVNCNVMKMFSDM-----G--VPTKETPFEVAEASDVVITMLPSSSH 114 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~-G-~~V~v~dr~~~~~~~l~~~-----g--~~~~~s~~e~~~~aDiVi~~v~~~~~ 114 (355)
...+|+|||+|.+|...+..|... + ..|.+|||++++.+++.+. + +...++.+++++ +|+|++|+|+..
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~~- 205 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSRK- 205 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCCC-
Confidence 346899999999999999999853 3 3589999999998877652 3 234678888886 999999999752
Q ss_pred HHHHhcCCCccccCCCCCCCeEEEEcCCCCHH
Q 018506 115 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ 146 (355)
Q Consensus 115 ~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~ 146 (355)
.++.. .+++ +++.|...++..|.
T Consensus 206 --P~~~~--~~l~-----~g~hV~~iGs~~p~ 228 (326)
T PRK06046 206 --PVVKA--EWIK-----EGTHINAIGADAPG 228 (326)
T ss_pred --cEecH--HHcC-----CCCEEEecCCCCCc
Confidence 22221 1332 45566666666654
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=97.84 E-value=7.6e-05 Score=64.61 Aligned_cols=95 Identities=16% Similarity=0.183 Sum_probs=65.1
Q ss_pred CCceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC-----CCCC----CCC---HHHHhhcCCEEEEeCC
Q 018506 44 QFESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-----GVPT----KET---PFEVAEASDVVITMLP 110 (355)
Q Consensus 44 ~~mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~-----g~~~----~~s---~~e~~~~aDiVi~~v~ 110 (355)
+.+++.|+|. |.+|..++..|++.|++|++++|++++++.+.+. +... ..+ ..++++++|+||.+.|
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~at~ 106 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAAGA 106 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEECCC
Confidence 4578999995 9999999999999999999999999988776541 1111 122 3467789999999998
Q ss_pred CchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHH
Q 018506 111 SSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ 146 (355)
Q Consensus 111 ~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~ 146 (355)
.+..... ... .. ..++.+++|..-..+.
T Consensus 107 ~g~~~~~---~~~-~~----~~~~~vv~D~~~~~~~ 134 (194)
T cd01078 107 AGVELLE---KLA-WA----PKPLAVAADVNAVPPV 134 (194)
T ss_pred CCceech---hhh-cc----cCceeEEEEccCCCCC
Confidence 7643111 101 11 1124688888665543
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=6e-05 Score=69.80 Aligned_cols=93 Identities=14% Similarity=0.215 Sum_probs=67.9
Q ss_pred CCceEEEEcccHHhHHHHHHHHHC-C-CcEEEEeCChhHHHHHHhC-----C--CCCCCCHHHHhhcCCEEEEeCCCchH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKA-G-YKMAVHDVNCNVMKMFSDM-----G--VPTKETPFEVAEASDVVITMLPSSSH 114 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~-G-~~V~v~dr~~~~~~~l~~~-----g--~~~~~s~~e~~~~aDiVi~~v~~~~~ 114 (355)
...+++|||+|..|...+..+..- . .+|.+|+|++++.+.+.+. + +..++++++++.+||+|+.+++..+
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~~- 194 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSDT- 194 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC-
Confidence 347899999999999999998864 2 3699999999998877542 3 3456899999999999999998653
Q ss_pred HHHHhcCCCccccCCCCCCCeEEEEcCCCCHH
Q 018506 115 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ 146 (355)
Q Consensus 115 ~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~ 146 (355)
.++. .++++ ++..|.-..+..|.
T Consensus 195 --P~~~--~~~l~-----pg~hV~aiGs~~p~ 217 (301)
T PRK06407 195 --PIFN--RKYLG-----DEYHVNLAGSNYPN 217 (301)
T ss_pred --cEec--HHHcC-----CCceEEecCCCCCC
Confidence 2222 12443 34566666665554
|
|
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=97.81 E-value=6.4e-05 Score=70.68 Aligned_cols=68 Identities=18% Similarity=0.275 Sum_probs=56.0
Q ss_pred CceEEEEcccHHhHHHHHHHHH-CC-CcEEEEeCChhHHHHHHhC-----CCC--CCCCHHHHhhcCCEEEEeCCCc
Q 018506 45 FESVGFIGLGNMGFRMASNLMK-AG-YKMAVHDVNCNVMKMFSDM-----GVP--TKETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~-~G-~~V~v~dr~~~~~~~l~~~-----g~~--~~~s~~e~~~~aDiVi~~v~~~ 112 (355)
.++|+|||+|.+|...+..|.. .+ .+|.+|+|++++++.+.+. ++. ..+++++++.++|+|+.++|..
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~ 208 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSE 208 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCC
Confidence 4689999999999999998885 44 5799999999999888652 333 3578889999999999998864
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00011 Score=59.17 Aligned_cols=74 Identities=16% Similarity=0.348 Sum_probs=59.8
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCC-----CCCCHHHHhhcCCEEEEeCCCchHHHHH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-----TKETPFEVAEASDVVITMLPSSSHVLDV 118 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~-----~~~s~~e~~~~aDiVi~~v~~~~~~~~v 118 (355)
+.+||.+||+| .|..+|..|++.|++|+..|.+++.++..++.+.. ......+..+++|+|-.+-|.++-...+
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~el~~~~ 94 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPRDLQPFI 94 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCHHHHHHH
Confidence 34789999999 99999999999999999999999999888776543 2344557788999999998876444343
|
|
| >PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline [] | Back alignment and domain information |
|---|
Probab=97.80 E-value=8.1e-05 Score=69.40 Aligned_cols=94 Identities=18% Similarity=0.256 Sum_probs=58.1
Q ss_pred CceEEEEcccHHhHHHHHHHHHC-C-CcEEEEeCChhHHHHHHh---C-CC--CCCCCHHHHhhcCCEEEEeCCCchHHH
Q 018506 45 FESVGFIGLGNMGFRMASNLMKA-G-YKMAVHDVNCNVMKMFSD---M-GV--PTKETPFEVAEASDVVITMLPSSSHVL 116 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~-G-~~V~v~dr~~~~~~~l~~---~-g~--~~~~s~~e~~~~aDiVi~~v~~~~~~~ 116 (355)
..+++|||+|..|..-+..+... + .+|.+|+|++++++++.+ . +. ..++++++++++||+|+.|++.....
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~- 206 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPA- 206 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEE-
T ss_pred CceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCC-
Confidence 46899999999999999988763 3 369999999999887765 2 33 35789999999999999999875310
Q ss_pred HHhcCCCccccCCCCCCCeEEEEcCCCCHH
Q 018506 117 DVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ 146 (355)
Q Consensus 117 ~vl~~~~~~l~~~~~~~~~ivi~~st~~~~ 146 (355)
.++.. .+++ ++..|...++..|.
T Consensus 207 P~~~~--~~l~-----~g~hi~~iGs~~~~ 229 (313)
T PF02423_consen 207 PVFDA--EWLK-----PGTHINAIGSYTPG 229 (313)
T ss_dssp ESB-G--GGS------TT-EEEE-S-SSTT
T ss_pred ccccH--HHcC-----CCcEEEEecCCCCc
Confidence 22221 2443 45677777766664
|
The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A. |
| >KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.75 E-value=8.7e-05 Score=67.71 Aligned_cols=137 Identities=17% Similarity=0.218 Sum_probs=96.7
Q ss_pred Cccccccccccccc----ccccc--cccCCCCCC--CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 15 SNLKSTVLLSSPFQ----SSAMR--RFFSSQVPS--CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 15 ~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~--~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
+.+-+++|+|-..+ +...| +|.+--+.- -.-.++||||+|.+|+-+|.++..-|..|+.||.- ...+...+
T Consensus 108 AEltigli~SLaR~i~~A~~s~k~g~wnr~~~~G~el~GKTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi-~~~~~~~a 186 (406)
T KOG0068|consen 108 AELTIGLILSLARQIGQASASMKEGKWNRVKYLGWELRGKTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPI-TPMALAEA 186 (406)
T ss_pred HHHHHHHHHHHhhhcchhheeeecCceeecceeeeEEeccEEEEeecccchHHHHHHHHhcCceEEeecCC-CchHHHHh
Confidence 34556777765222 22222 566553321 22378999999999999999999999999989853 22234445
Q ss_pred CCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 87 MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 87 ~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
.|+... +.+|++..||+|-+-+|-..+++.++... .++.++ +|..||+++.+..-....+.+.+..
T Consensus 187 ~gvq~v-sl~Eil~~ADFitlH~PLtP~T~~lin~~--tfA~mK--kGVriIN~aRGGvVDe~ALv~Al~s 252 (406)
T KOG0068|consen 187 FGVQLV-SLEEILPKADFITLHVPLTPSTEKLLNDE--TFAKMK--KGVRIINVARGGVVDEPALVRALDS 252 (406)
T ss_pred ccceee-eHHHHHhhcCEEEEccCCCcchhhccCHH--HHHHhh--CCcEEEEecCCceechHHHHHHHhc
Confidence 666654 89999999999999999888888877653 344433 7889999999887666777776653
|
|
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00024 Score=64.67 Aligned_cols=103 Identities=17% Similarity=0.310 Sum_probs=65.3
Q ss_pred CceEEEEc-ccHHhHHHHHHHHH-CCCcE-EEEeCC-hhHH----HHHHh---CCCCCCCCHHHHhhcCCEEEEeCCCch
Q 018506 45 FESVGFIG-LGNMGFRMASNLMK-AGYKM-AVHDVN-CNVM----KMFSD---MGVPTKETPFEVAEASDVVITMLPSSS 113 (355)
Q Consensus 45 ~mkIgiIG-~G~mG~~ia~~L~~-~G~~V-~v~dr~-~~~~----~~l~~---~g~~~~~s~~e~~~~aDiVi~~v~~~~ 113 (355)
||||+|+| +|.||..+++.+.+ .++++ .++||. ++.. ..+.. .++..+++++++...+|+||.+.+..
T Consensus 1 ~ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~p~- 79 (266)
T TIGR00036 1 TIKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTTPE- 79 (266)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCChH-
Confidence 47999999 69999999999986 46775 467853 3221 12211 34566678888755799999999754
Q ss_pred HHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHH
Q 018506 114 HVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAV 155 (355)
Q Consensus 114 ~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~ 155 (355)
...+.+.. .++. +-.+|+-++...+++.+.+.+..
T Consensus 80 ~~~~~~~~---al~~----g~~vVigttg~~~e~~~~l~~aA 114 (266)
T TIGR00036 80 GVLNHLKF---ALEH----GVRLVVGTTGFSEEDKQELADLA 114 (266)
T ss_pred HHHHHHHH---HHHC----CCCEEEECCCCCHHHHHHHHHHH
Confidence 54444432 3332 12356556555566666665554
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.74 E-value=5.5e-05 Score=63.39 Aligned_cols=65 Identities=17% Similarity=0.219 Sum_probs=50.9
Q ss_pred ceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC-----CCCCCCCHHHHhhcCCEEEEeCC
Q 018506 46 ESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-----GVPTKETPFEVAEASDVVITMLP 110 (355)
Q Consensus 46 mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~-----g~~~~~s~~e~~~~aDiVi~~v~ 110 (355)
|||+|||+ |..|+.|+.-..++||+|+..-||++++...... .+.--+++.+.+..-|+||.+..
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~ 71 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFG 71 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEecc
Confidence 89999975 9999999999999999999999999998664321 11112344567778999998864
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=7.7e-05 Score=69.75 Aligned_cols=65 Identities=26% Similarity=0.314 Sum_probs=48.8
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHH--H---Hh---CC----CCCCCCHHHHhhcCCEEEEeC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKM--F---SD---MG----VPTKETPFEVAEASDVVITML 109 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~--l---~~---~g----~~~~~s~~e~~~~aDiVi~~v 109 (355)
+.+||+|||+|.||..+|..++..|+ +|.++|+++++++. + .. .+ +..+.+. +++++||+||++.
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta 82 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA 82 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence 34799999999999999999999996 89999999885421 1 11 11 2223454 6778999999986
|
|
| >COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0001 Score=69.51 Aligned_cols=78 Identities=22% Similarity=0.267 Sum_probs=61.6
Q ss_pred CCCceEEEEcccHHh-HHHHHHHHHCCC--c-EEEEeCChhHHHHHHh-CCC-CCCCCHHHHhhc--CCEEEEeCCCchH
Q 018506 43 CQFESVGFIGLGNMG-FRMASNLMKAGY--K-MAVHDVNCNVMKMFSD-MGV-PTKETPFEVAEA--SDVVITMLPSSSH 114 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG-~~ia~~L~~~G~--~-V~v~dr~~~~~~~l~~-~g~-~~~~s~~e~~~~--aDiVi~~v~~~~~ 114 (355)
++++||||||+|.++ ...+..+.+.+. + |.++|+++++++.+.+ .++ ...+|.++++++ .|+|++++|+...
T Consensus 1 ~~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H 80 (342)
T COG0673 1 MKMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALH 80 (342)
T ss_pred CCeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhh
Confidence 357899999999555 568888888764 3 6788999999988877 455 377899999875 5999999999877
Q ss_pred HHHHhc
Q 018506 115 VLDVYN 120 (355)
Q Consensus 115 ~~~vl~ 120 (355)
.+-++.
T Consensus 81 ~e~~~~ 86 (342)
T COG0673 81 AELALA 86 (342)
T ss_pred HHHHHH
Confidence 666544
|
|
| >PRK07589 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00017 Score=67.84 Aligned_cols=94 Identities=12% Similarity=0.136 Sum_probs=65.9
Q ss_pred CceEEEEcccHHhHHHHHHHHHC--CCcEEEEeCChhHHHHHHh----CC--CCCCCCHHHHhhcCCEEEEeCCCchHHH
Q 018506 45 FESVGFIGLGNMGFRMASNLMKA--GYKMAVHDVNCNVMKMFSD----MG--VPTKETPFEVAEASDVVITMLPSSSHVL 116 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~--G~~V~v~dr~~~~~~~l~~----~g--~~~~~s~~e~~~~aDiVi~~v~~~~~~~ 116 (355)
..+++|||+|..+...++.+..- -.+|.+|+|++++.+.+.+ .+ +..+++++++++++|+|+.|+++... .
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~~~-~ 207 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADKTN-A 207 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCCC-C
Confidence 46799999999999988877653 2479999999999887664 23 33468999999999999999975421 1
Q ss_pred HHhcCCCccccCCCCCCCeEEEEcCCCCHH
Q 018506 117 DVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ 146 (355)
Q Consensus 117 ~vl~~~~~~l~~~~~~~~~ivi~~st~~~~ 146 (355)
.++.. ++++ +|..|.-..+..|.
T Consensus 208 Pvl~~--~~lk-----pG~hV~aIGs~~p~ 230 (346)
T PRK07589 208 TILTD--DMVE-----PGMHINAVGGDCPG 230 (346)
T ss_pred ceecH--HHcC-----CCcEEEecCCCCCC
Confidence 12221 2443 45566666665554
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00021 Score=68.22 Aligned_cols=66 Identities=18% Similarity=0.195 Sum_probs=52.9
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC-CCCC---C---CCHHHHhhcCCEEEEeCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPT---K---ETPFEVAEASDVVITMLP 110 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~-g~~~---~---~s~~e~~~~aDiVi~~v~ 110 (355)
..+|.|||+|.+|...++.+...|.+|+++||++++.+.+... +... . .++.+.+.++|+||.+++
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~ 239 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVL 239 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccc
Confidence 4579999999999999999999999999999999988877653 2211 1 234566789999999873
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.69 E-value=9.7e-05 Score=67.89 Aligned_cols=68 Identities=21% Similarity=0.312 Sum_probs=54.0
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHhC-----C-C--CCCCCHHHHhhcCCEEEEeCCCc
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-----G-V--PTKETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~~-----g-~--~~~~s~~e~~~~aDiVi~~v~~~ 112 (355)
..+|.|||+|.+|++++..|.+.|. +|+++||+.++++.+.+. . . ....+..+.+.++|+||.|+|..
T Consensus 127 ~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~G 203 (284)
T PRK12549 127 LERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTG 203 (284)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCC
Confidence 3689999999999999999999997 699999999999887652 1 1 11234455667899999998754
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0001 Score=68.70 Aligned_cols=66 Identities=17% Similarity=0.233 Sum_probs=50.1
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCC--cEEEEeCChhHHHHHH----hC-----CCCCCCCHHHHhhcCCEEEEeCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMKMFS----DM-----GVPTKETPFEVAEASDVVITMLP 110 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~--~V~v~dr~~~~~~~l~----~~-----g~~~~~s~~e~~~~aDiVi~~v~ 110 (355)
.+||+|||+|.+|..+|..|...|. ++.++|++.++++... +. ......+..+.+++||+||++.-
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag 82 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAG 82 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecC
Confidence 4799999999999999999999887 7999999887754332 21 12222344566799999999863
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=97.67 E-value=5.1e-05 Score=60.45 Aligned_cols=89 Identities=21% Similarity=0.213 Sum_probs=56.1
Q ss_pred eEEEEc-ccHHhHHHHHHHHHCCC-c-EEEEeCChhHHHHHHhC--------CCCCCCCHHHHhhcCCEEEEeCCCchHH
Q 018506 47 SVGFIG-LGNMGFRMASNLMKAGY-K-MAVHDVNCNVMKMFSDM--------GVPTKETPFEVAEASDVVITMLPSSSHV 115 (355)
Q Consensus 47 kIgiIG-~G~mG~~ia~~L~~~G~-~-V~v~dr~~~~~~~l~~~--------g~~~~~s~~e~~~~aDiVi~~v~~~~~~ 115 (355)
||+||| .|.+|..+.+.|.+.-+ + +.++.++.+.-+.+... .....+...+.+.++|+||+|+|+. ..
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~-~~ 79 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHG-AS 79 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHH-HH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchh-HH
Confidence 799999 99999999999998532 3 55667665222222221 1122222334558999999999875 44
Q ss_pred HHHhcCCCccccCCCCCCCeEEEEcCCCC
Q 018506 116 LDVYNGPNGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 116 ~~vl~~~~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.+.... +++ ++..|||.|+..
T Consensus 80 ~~~~~~---~~~-----~g~~ViD~s~~~ 100 (121)
T PF01118_consen 80 KELAPK---LLK-----AGIKVIDLSGDF 100 (121)
T ss_dssp HHHHHH---HHH-----TTSEEEESSSTT
T ss_pred HHHHHH---Hhh-----CCcEEEeCCHHH
Confidence 444432 232 456899998865
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00015 Score=66.58 Aligned_cols=69 Identities=12% Similarity=0.173 Sum_probs=54.5
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCC-CcEEEEeCChhHHHHHHhC-C----CCCCCCHHHHhhcCCEEEEeCCCc
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDM-G----VPTKETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G-~~V~v~dr~~~~~~~l~~~-g----~~~~~s~~e~~~~aDiVi~~v~~~ 112 (355)
...++.|+|+|.+|.+++..|.+.| .+|++++|+.++++.+.+. + +....+..+.+..+|+||.|+|..
T Consensus 122 ~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g 196 (278)
T PRK00258 122 KGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAG 196 (278)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCC
Confidence 3468999999999999999999999 7899999999998887653 1 111113345667899999999865
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00011 Score=66.88 Aligned_cols=62 Identities=26% Similarity=0.438 Sum_probs=49.2
Q ss_pred EEEEcc-cHHhHHHHHHHHHCC----CcEEEEeCChhHHHHHHh-----------CCCCCCCCHHHHhhcCCEEEEeC
Q 018506 48 VGFIGL-GNMGFRMASNLMKAG----YKMAVHDVNCNVMKMFSD-----------MGVPTKETPFEVAEASDVVITML 109 (355)
Q Consensus 48 IgiIG~-G~mG~~ia~~L~~~G----~~V~v~dr~~~~~~~l~~-----------~g~~~~~s~~e~~~~aDiVi~~v 109 (355)
|+|||+ |.||..++..|+..| .+|.++|+++++++.... ..+..++++.+++++||+||++.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~ 78 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITA 78 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECC
Confidence 689999 999999999999998 789999998876544221 12233566688899999999965
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00043 Score=63.59 Aligned_cols=93 Identities=19% Similarity=0.213 Sum_probs=64.1
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHC-CCcE-EEEeCChhHH--HHHHhCCCCC-CCCHHHHhh-----cCCEEEEeCCCc
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKA-GYKM-AVHDVNCNVM--KMFSDMGVPT-KETPFEVAE-----ASDVVITMLPSS 112 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~-G~~V-~v~dr~~~~~--~~l~~~g~~~-~~s~~e~~~-----~aDiVi~~v~~~ 112 (355)
++++||||||+|++|+.+...+.+. +.++ .++|++++.. +...+.|+.. .++.+++++ +.|+||.+++..
T Consensus 2 m~klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~ 81 (302)
T PRK08300 2 MSKLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAG 81 (302)
T ss_pred CCCCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHH
Confidence 3568999999999999988888764 4564 5778988642 3344467765 467888874 589999999876
Q ss_pred hHHHHHhcCCCccccCCCCCCCeEEEEcCCCC
Q 018506 113 SHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 113 ~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.+.+.... ..+ .|+.++|.+...
T Consensus 82 ~H~e~a~~----a~e-----aGk~VID~sPA~ 104 (302)
T PRK08300 82 AHVRHAAK----LRE-----AGIRAIDLTPAA 104 (302)
T ss_pred HHHHHHHH----HHH-----cCCeEEECCccc
Confidence 44433221 221 456788877654
|
|
| >COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00031 Score=65.44 Aligned_cols=94 Identities=19% Similarity=0.241 Sum_probs=70.2
Q ss_pred CCceEEEEcccHHhHHHHHHHHHC--CCcEEEEeCChhHHHHHHh----CC---CCCCCCHHHHhhcCCEEEEeCCCchH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKA--GYKMAVHDVNCNVMKMFSD----MG---VPTKETPFEVAEASDVVITMLPSSSH 114 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~--G~~V~v~dr~~~~~~~l~~----~g---~~~~~s~~e~~~~aDiVi~~v~~~~~ 114 (355)
....++|||+|..+......+.+- ..+|.+|+|+++..+++.. .+ +..++|.+++++.||+|+.|+|+.+
T Consensus 129 da~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~- 207 (330)
T COG2423 129 DASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE- 207 (330)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC-
Confidence 346799999999999999999864 2479999999999888763 23 4678899999999999999999864
Q ss_pred HHHHhcCCCccccCCCCCCCeEEEEcCCCCHHH
Q 018506 115 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQT 147 (355)
Q Consensus 115 ~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~ 147 (355)
.++.. .+++ ++..|..+++..|..
T Consensus 208 --Pil~~--~~l~-----~G~hI~aiGad~p~k 231 (330)
T COG2423 208 --PVLKA--EWLK-----PGTHINAIGADAPGK 231 (330)
T ss_pred --CeecH--hhcC-----CCcEEEecCCCCccc
Confidence 33322 2443 455666666555543
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00015 Score=71.17 Aligned_cols=67 Identities=25% Similarity=0.422 Sum_probs=54.3
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh-CCCCC-----C--CCHHHH-hhcCCEEEEeCCCc
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-MGVPT-----K--ETPFEV-AEASDVVITMLPSS 112 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~-~g~~~-----~--~s~~e~-~~~aDiVi~~v~~~ 112 (355)
|+|.|+|+|.+|..++..|.+.|++|+++++++++++.+.+ .+... . ....++ +.++|.||++++++
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~ 76 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSD 76 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCCh
Confidence 68999999999999999999999999999999999988865 43221 1 123334 57899999999875
|
|
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00047 Score=51.31 Aligned_cols=47 Identities=28% Similarity=0.422 Sum_probs=40.5
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHC-CCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHH
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKA-GYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 115 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~-G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~ 115 (355)
....+++|+|.|.+|..++..|.+. +.+|.+||| |++|.|++.+..+
T Consensus 21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r--------------------------di~i~~~~~~~~~ 68 (86)
T cd05191 21 LKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR--------------------------DILVTATPAGVPV 68 (86)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--------------------------CEEEEcCCCCCCc
Confidence 3457899999999999999999998 678999998 9999999766443
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >PRK11579 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0012 Score=62.46 Aligned_cols=103 Identities=19% Similarity=0.270 Sum_probs=67.3
Q ss_pred CceEEEEcccHHhHH-HHHHHHHC-CCcE-EEEeCChhHHHHHHhCCCCCCCCHHHHhh--cCCEEEEeCCCchHHHHHh
Q 018506 45 FESVGFIGLGNMGFR-MASNLMKA-GYKM-AVHDVNCNVMKMFSDMGVPTKETPFEVAE--ASDVVITMLPSSSHVLDVY 119 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~-ia~~L~~~-G~~V-~v~dr~~~~~~~l~~~g~~~~~s~~e~~~--~aDiVi~~v~~~~~~~~vl 119 (355)
++||||||+|.+|.. .+..+.+. +.++ .++|+++++... ...+....++.+++++ +.|+|++|+|+....+.++
T Consensus 4 ~irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~-~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~H~~~~~ 82 (346)
T PRK11579 4 KIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVKA-DWPTVTVVSEPQHLFNDPNIDLIVIPTPNDTHFPLAK 82 (346)
T ss_pred cceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHh-hCCCCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHHH
Confidence 479999999999984 56666654 5675 478999877542 1124556789999985 5799999999887666655
Q ss_pred cCCCccccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHh
Q 018506 120 NGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVS 156 (355)
Q Consensus 120 ~~~~~~l~~~~~~~~~ivi~~-st~~~~~~~~l~~~~~ 156 (355)
.. ++. +..++++- -..+..+.+++.+...
T Consensus 83 ~a----l~a----GkhVl~EKPla~t~~ea~~l~~~a~ 112 (346)
T PRK11579 83 AA----LEA----GKHVVVDKPFTVTLSQARELDALAK 112 (346)
T ss_pred HH----HHC----CCeEEEeCCCCCCHHHHHHHHHHHH
Confidence 42 321 11355542 2334555666655543
|
|
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00026 Score=66.92 Aligned_cols=92 Identities=25% Similarity=0.286 Sum_probs=57.0
Q ss_pred CceEEEEcc-cHHhHHHHHHHHHC-CCcEEE-EeCChhHHHHHHh----C-CC--CCCCCHH-HHhhcCCEEEEeCCCch
Q 018506 45 FESVGFIGL-GNMGFRMASNLMKA-GYKMAV-HDVNCNVMKMFSD----M-GV--PTKETPF-EVAEASDVVITMLPSSS 113 (355)
Q Consensus 45 ~mkIgiIG~-G~mG~~ia~~L~~~-G~~V~v-~dr~~~~~~~l~~----~-g~--~~~~s~~-e~~~~aDiVi~~v~~~~ 113 (355)
|+||+|||+ |.+|..+++.|.+. ++++.. ++|. +..+.+.+ . +. ....+.+ ...+++|+||+|+|+..
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~-~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~ 80 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRS-SAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGV 80 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECcc-ccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHH
Confidence 589999997 99999999999976 567644 5542 22222221 1 11 0122222 24468999999999864
Q ss_pred HHHHHhcCCCccccCCCCCCCeEEEEcCCCCHH
Q 018506 114 HVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ 146 (355)
Q Consensus 114 ~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~ 146 (355)
.. ++... .++ .|+.|||.|+...-
T Consensus 81 ~~-~~v~~---a~~-----aG~~VID~S~~fR~ 104 (343)
T PRK00436 81 SM-DLAPQ---LLE-----AGVKVIDLSADFRL 104 (343)
T ss_pred HH-HHHHH---HHh-----CCCEEEECCcccCC
Confidence 43 33322 222 45789999987643
|
|
| >PRK06349 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00074 Score=65.72 Aligned_cols=69 Identities=20% Similarity=0.280 Sum_probs=50.5
Q ss_pred CCceEEEEcccHHhHHHHHHHHHC--------C--Cc-EEEEeCChhHHHHHHhCCCCCCCCHHHHhh--cCCEEEEeCC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKA--------G--YK-MAVHDVNCNVMKMFSDMGVPTKETPFEVAE--ASDVVITMLP 110 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~--------G--~~-V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~--~aDiVi~~v~ 110 (355)
+++||||||+|.||+.+++.|.++ | .+ +.+++|++++...+...+...+++.++++. +.|+|+.+++
T Consensus 2 ~~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg 81 (426)
T PRK06349 2 KPLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMG 81 (426)
T ss_pred CeEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCC
Confidence 458999999999999999888654 2 34 457799887754332234456778888885 4699999986
Q ss_pred Cc
Q 018506 111 SS 112 (355)
Q Consensus 111 ~~ 112 (355)
..
T Consensus 82 ~~ 83 (426)
T PRK06349 82 GI 83 (426)
T ss_pred Cc
Confidence 54
|
|
| >TIGR01761 thiaz-red thiazolinyl imide reductase | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0017 Score=61.08 Aligned_cols=66 Identities=17% Similarity=0.240 Sum_probs=55.9
Q ss_pred CceEEEEcccHHhHHHHHHHHHCC--Cc-EEEEeCChhHHHHHHh-CCCCCCCCHHHHhhcCCEEEEeCCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAG--YK-MAVHDVNCNVMKMFSD-MGVPTKETPFEVAEASDVVITMLPS 111 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G--~~-V~v~dr~~~~~~~l~~-~g~~~~~s~~e~~~~aDiVi~~v~~ 111 (355)
..||||||+ .||...+..+.+.. .+ |.++|+++++++++.+ .|+...++.++++++.|++++++|+
T Consensus 3 ~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt 72 (343)
T TIGR01761 3 VQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRS 72 (343)
T ss_pred CcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCC
Confidence 478999999 68999999998754 56 4578999999998877 5777889999999889999999865
|
This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG). |
| >PRK15076 alpha-galactosidase; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0001 Score=71.71 Aligned_cols=67 Identities=18% Similarity=0.322 Sum_probs=49.4
Q ss_pred CceEEEEcccHHhHHHHH--HHH----HCCCcEEEEeCChhHHHHHHh--------CC----CCCCCCHHHHhhcCCEEE
Q 018506 45 FESVGFIGLGNMGFRMAS--NLM----KAGYKMAVHDVNCNVMKMFSD--------MG----VPTKETPFEVAEASDVVI 106 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~--~L~----~~G~~V~v~dr~~~~~~~l~~--------~g----~~~~~s~~e~~~~aDiVi 106 (355)
|+||+|||+|.||...+. .++ -.+.+|+++|+++++++.... .+ +..+++..+++++||+||
T Consensus 1 ~~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv 80 (431)
T PRK15076 1 MPKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVI 80 (431)
T ss_pred CcEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEe
Confidence 479999999999966655 443 235689999999988763211 12 334667789999999999
Q ss_pred EeCCC
Q 018506 107 TMLPS 111 (355)
Q Consensus 107 ~~v~~ 111 (355)
+++-.
T Consensus 81 ~ti~v 85 (431)
T PRK15076 81 NAIQV 85 (431)
T ss_pred Eeeee
Confidence 99744
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00042 Score=63.18 Aligned_cols=77 Identities=12% Similarity=0.205 Sum_probs=60.3
Q ss_pred CCCceEEEEcccH-HhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcC
Q 018506 43 CQFESVGFIGLGN-MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 121 (355)
Q Consensus 43 ~~~mkIgiIG~G~-mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~ 121 (355)
..-.+|.|||.|. +|.+++..|.+.|..|+++++.. .++.+.+++||+||.+++.+.-+..
T Consensus 156 l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t--------------~~l~~~~~~ADIVIsAvg~p~~i~~---- 217 (286)
T PRK14175 156 LEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS--------------KDMASYLKDADVIVSAVGKPGLVTK---- 217 (286)
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHHhhCCEEEECCCCCcccCH----
Confidence 3457899999988 99999999999999999998742 3577888999999999988643222
Q ss_pred CCccccCCCCCCCeEEEEcCCCC
Q 018506 122 PNGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 122 ~~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.+++ ++.+|||.+...
T Consensus 218 --~~vk-----~gavVIDvGi~~ 233 (286)
T PRK14175 218 --DVVK-----EGAVIIDVGNTP 233 (286)
T ss_pred --HHcC-----CCcEEEEcCCCc
Confidence 1332 457999987653
|
|
| >PRK06199 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00033 Score=66.94 Aligned_cols=68 Identities=21% Similarity=0.280 Sum_probs=55.8
Q ss_pred CceEEEEcccHHhHHHHHHHHHCC---CcEEEEeCChhHHHHHHh----C--C---CCCCCCHHHHhhcCCEEEEeCCCc
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAG---YKMAVHDVNCNVMKMFSD----M--G---VPTKETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G---~~V~v~dr~~~~~~~l~~----~--g---~~~~~s~~e~~~~aDiVi~~v~~~ 112 (355)
..+++|||+|..+......+..-- .+|.+|+|++++++.+.+ . + +..+++.++++++||+|+.|+++.
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~ 234 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGE 234 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCC
Confidence 468999999999999999988732 379999999999887654 1 2 345789999999999999998753
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00031 Score=65.41 Aligned_cols=64 Identities=22% Similarity=0.296 Sum_probs=47.6
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCC--cEEEEeCChhHHHHH----HhC-------CCCCCCCHHHHhhcCCEEEEeC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMKMF----SDM-------GVPTKETPFEVAEASDVVITML 109 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~--~V~v~dr~~~~~~~l----~~~-------g~~~~~s~~e~~~~aDiVi~~v 109 (355)
.+||+|||+|.+|..+|..|+..|. ++.++|+++++++.. ... .+....+.+ .+++||+||++.
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~-~~~~adivvita 79 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYS-VTANSKVVIVTA 79 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHH-HhCCCCEEEECC
Confidence 4699999999999999999998875 699999988765332 221 122234555 478999999975
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00031 Score=64.54 Aligned_cols=68 Identities=18% Similarity=0.235 Sum_probs=52.7
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHhC-C----CCCCC---CHHHHhhcCCEEEEeCCCc
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-G----VPTKE---TPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~~-g----~~~~~---s~~e~~~~aDiVi~~v~~~ 112 (355)
..++.|||+|.+|++++..|.+.|. +|+++||++++++.+.+. + +.... +..+.+.++|+||-|+|..
T Consensus 125 ~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g 201 (282)
T TIGR01809 125 GFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPAD 201 (282)
T ss_pred CceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCC
Confidence 4679999999999999999999996 699999999999888752 1 11111 2234456789999998765
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0008 Score=61.52 Aligned_cols=90 Identities=21% Similarity=0.291 Sum_probs=61.1
Q ss_pred ceEEEEcccHHhHHHHHHHHHC-CCcE-EEEeCChhHH--HHHHhCCCCC-CCCHHHHhh--cCCEEEEeCCCchHHHHH
Q 018506 46 ESVGFIGLGNMGFRMASNLMKA-GYKM-AVHDVNCNVM--KMFSDMGVPT-KETPFEVAE--ASDVVITMLPSSSHVLDV 118 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~-G~~V-~v~dr~~~~~--~~l~~~g~~~-~~s~~e~~~--~aDiVi~~v~~~~~~~~v 118 (355)
+||||||+|+||..++..+.+. +.++ .++++++++. +...+.|+.. .++.+++++ +.|+|++++|+..+.+..
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~e~a 81 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHARHA 81 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHHHHH
Confidence 6899999999999998877754 4565 4678888753 3334466654 446777775 578899999987665543
Q ss_pred hcCCCccccCCCCCCCeEEEEcCCCC
Q 018506 119 YNGPNGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 119 l~~~~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.. .++ .|+.++|.+...
T Consensus 82 ~~----al~-----aGk~VIdekPa~ 98 (285)
T TIGR03215 82 RL----LAE-----LGKIVIDLTPAA 98 (285)
T ss_pred HH----HHH-----cCCEEEECCccc
Confidence 32 222 345677665543
|
Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc. |
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00085 Score=71.29 Aligned_cols=71 Identities=21% Similarity=0.218 Sum_probs=54.7
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCC-Cc-------------EEEEeCChhHHHHHHhC--CC---CC-CCCHHHHh---h
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAG-YK-------------MAVHDVNCNVMKMFSDM--GV---PT-KETPFEVA---E 100 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G-~~-------------V~v~dr~~~~~~~l~~~--g~---~~-~~s~~e~~---~ 100 (355)
.+.||+|||+|.||...+..|++.. .+ |++.|+++++++++.+. ++ .. +.+.+++. +
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~ 647 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS 647 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence 4678999999999999999998753 23 89999999998887662 32 22 44555554 5
Q ss_pred cCCEEEEeCCCchH
Q 018506 101 ASDVVITMLPSSSH 114 (355)
Q Consensus 101 ~aDiVi~~v~~~~~ 114 (355)
++|+||+|+|..-.
T Consensus 648 ~~DaVIsalP~~~H 661 (1042)
T PLN02819 648 QVDVVISLLPASCH 661 (1042)
T ss_pred CCCEEEECCCchhh
Confidence 79999999998643
|
|
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00035 Score=64.80 Aligned_cols=64 Identities=23% Similarity=0.272 Sum_probs=49.0
Q ss_pred EEEEcccHHhHHHHHHHHHCC--CcEEEEeCChhHHHHHHhC--------C-CCC--CCCHHHHhhcCCEEEEeCCCc
Q 018506 48 VGFIGLGNMGFRMASNLMKAG--YKMAVHDVNCNVMKMFSDM--------G-VPT--KETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 48 IgiIG~G~mG~~ia~~L~~~G--~~V~v~dr~~~~~~~l~~~--------g-~~~--~~s~~e~~~~aDiVi~~v~~~ 112 (355)
|+|||+|.+|+++|..|+..| ++++++|+++++++..... . ... .++ .+.+++||+||++...+
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~p 77 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGAP 77 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCCC
Confidence 689999999999999999988 6899999998876554321 0 111 233 56788999999997543
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00046 Score=66.23 Aligned_cols=109 Identities=15% Similarity=0.133 Sum_probs=68.1
Q ss_pred ceEEEEcccHHhH-HHHHHHHHCCCcEEEEeCChhHHHHHHhCCCC---C---------------C--CCHHH---Hhhc
Q 018506 46 ESVGFIGLGNMGF-RMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP---T---------------K--ETPFE---VAEA 101 (355)
Q Consensus 46 mkIgiIG~G~mG~-~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~---~---------------~--~s~~e---~~~~ 101 (355)
|||.++|+|+||+ .++..|.+.|++|+++|++++.++.+++.|.- . . .+.++ .+..
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~ 80 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEAVIEAIAE 80 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHHHHHHhcC
Confidence 7899999999998 55888999999999999999999999876521 0 0 12222 3347
Q ss_pred CCEEEEeCCCchHHHHHhcCCCccccCCCC---CCCeEEEEcCCCCHHHHHHHHHHHh
Q 018506 102 SDVVITMLPSSSHVLDVYNGPNGLLQGGNS---VRPQLLIDSSTIDPQTSRNISAAVS 156 (355)
Q Consensus 102 aDiVi~~v~~~~~~~~vl~~~~~~l~~~~~---~~~~ivi~~st~~~~~~~~l~~~~~ 156 (355)
+|+|++++... .++.+...+.+.+..... .++.+|+.|-+ .+.....+.+.+.
T Consensus 81 ~dlvt~~v~~~-~~~s~~~~l~~~L~~R~~~~~~~~~~VlsceN-~~~ng~~L~~~V~ 136 (381)
T PRK02318 81 ADLVTTAVGPN-ILPFIAPLIAKGLKKRKAQGNTKPLNIIACEN-MIRGTSFLKKHVL 136 (381)
T ss_pred CCEEEeCCCcc-cchhHHHHHHHHHHHHHHcCCCCCCEEEecCC-hhhHHHHHHHHHH
Confidence 89999988643 444544443333322100 12224555544 4444455555543
|
|
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00058 Score=64.61 Aligned_cols=90 Identities=23% Similarity=0.231 Sum_probs=57.7
Q ss_pred ceEEEEcc-cHHhHHHHHHHHHC-CCcEE-EEeCChhHHHHHHh-C----CC---CCC-CCHHHHhhcCCEEEEeCCCch
Q 018506 46 ESVGFIGL-GNMGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSD-M----GV---PTK-ETPFEVAEASDVVITMLPSSS 113 (355)
Q Consensus 46 mkIgiIG~-G~mG~~ia~~L~~~-G~~V~-v~dr~~~~~~~l~~-~----g~---~~~-~s~~e~~~~aDiVi~~v~~~~ 113 (355)
|||+|||+ |.+|..+++.|.+. ++++. +++++...-+.+.+ . +. ... .+.+++.+++|+||+|+|...
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~~ 80 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHGV 80 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCchH
Confidence 68999998 99999999999976 45766 55644322222221 0 11 111 145566568999999999863
Q ss_pred HHHHHhcCCCccccCCCCCCCeEEEEcCCCC
Q 018506 114 HVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 114 ~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~ 144 (355)
..++... +.+ .|+.|||.|+..
T Consensus 81 -s~~~~~~---~~~-----~G~~VIDlS~~f 102 (346)
T TIGR01850 81 -SAELAPE---LLA-----AGVKVIDLSADF 102 (346)
T ss_pred -HHHHHHH---HHh-----CCCEEEeCChhh
Confidence 3443332 222 356899999875
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0011 Score=62.69 Aligned_cols=69 Identities=22% Similarity=0.355 Sum_probs=48.2
Q ss_pred CceEEEEcccHHhHHHHHHHHHC-CCcEE-EEeCChhHHHHHHh-C------------------CCCCCCCHHHHhhcCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSD-M------------------GVPTKETPFEVAEASD 103 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~-G~~V~-v~dr~~~~~~~l~~-~------------------g~~~~~s~~e~~~~aD 103 (355)
|+||||+|+|.||..+++.+.+. +.++. +++++++....+.. . ++.+..+..++..++|
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vD 80 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKAD 80 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCC
Confidence 57999999999999999998864 45654 55767655544332 1 2233456667777788
Q ss_pred EEEEeCCCch
Q 018506 104 VVITMLPSSS 113 (355)
Q Consensus 104 iVi~~v~~~~ 113 (355)
+||.|.+...
T Consensus 81 VVIdaT~~~~ 90 (341)
T PRK04207 81 IVVDATPGGV 90 (341)
T ss_pred EEEECCCchh
Confidence 8888887653
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00059 Score=59.35 Aligned_cols=34 Identities=35% Similarity=0.601 Sum_probs=31.4
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVN 77 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~ 77 (355)
...||+|+|+|.||+.++..|++.|+ +++++|++
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 44789999999999999999999998 69999998
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0012 Score=67.20 Aligned_cols=76 Identities=16% Similarity=0.324 Sum_probs=60.1
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCC---CCHHHH-----hhcCCEEEEeCCCchHHH
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK---ETPFEV-----AEASDVVITMLPSSSHVL 116 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~---~s~~e~-----~~~aDiVi~~v~~~~~~~ 116 (355)
.++|-|+|.|.+|..+++.|.+.|+++++.|.|+++++.+++.|..+. .+..+. ++++|.+++++++++...
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~ 479 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTM 479 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHH
Confidence 468999999999999999999999999999999999999988764331 122222 368999999999876554
Q ss_pred HHhc
Q 018506 117 DVYN 120 (355)
Q Consensus 117 ~vl~ 120 (355)
.+..
T Consensus 480 ~i~~ 483 (601)
T PRK03659 480 KIVE 483 (601)
T ss_pred HHHH
Confidence 4443
|
|
| >COG4408 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.05 Score=49.86 Aligned_cols=284 Identities=14% Similarity=0.169 Sum_probs=154.7
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCC-CcEEEEeCChhHHHHHHh---CC------------------C---CCCCCHHHH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCNVMKMFSD---MG------------------V---PTKETPFEV 98 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G-~~V~v~dr~~~~~~~l~~---~g------------------~---~~~~s~~e~ 98 (355)
.|.++-++|+|....-+|.-+...| ..+-+++|-..+-+.+.+ .+ + ....+++++
T Consensus 3 ~m~~vLllGtGpvaIQlAv~l~~h~d~~lg~~~r~s~rse~l~qala~~~ql~l~~q~eahr~leg~~~id~~~kd~a~~ 82 (431)
T COG4408 3 NMLPVLLLGTGPVAIQLAVDLSAHGDARLGLYNRPSTRSERLKQALALTPQLYLQGQGEAHRQLEGSVTIDCYIKDLAQA 82 (431)
T ss_pred cccceeEeecCcHHHHHHHHHHhccCceeeccCCCCchhHHHHHHHhcCCeEEEEeccHHHHhhcCceehhHHHhhHHHh
Confidence 4568999999999999999999887 468888875555444433 11 0 123567777
Q ss_pred hhcCCEEEEeCCCchHHHHHhcCCC-ccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhch-hhhccCCCCCceEEeC-
Q 018506 99 AEASDVVITMLPSSSHVLDVYNGPN-GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCI-LKEKKDSWENPVMLDA- 175 (355)
Q Consensus 99 ~~~aDiVi~~v~~~~~~~~vl~~~~-~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~-~~~~~g~~~~~~~~~~- 175 (355)
..+-+-+|+|||.+ +-.+|+.++. +.+.. .+..++|..+-++-..++.+........ +.....+..+..+++.
T Consensus 83 ~~dwqtlilav~aD-aY~dvlqqi~~e~L~~---vk~viLiSptfGsn~lv~~~mnk~~~daeViS~SsY~~dTk~id~~ 158 (431)
T COG4408 83 VGDWQTLILAVPAD-AYYDVLQQIPWEALPQ---VKSVILISPTFGSNLLVQNLMNKAGRDAEVISLSSYYADTKYIDAE 158 (431)
T ss_pred hchhheEEEEeecH-HHHHHHhcCCHhHhcc---ccEEEEecccccccHHHHHHHhhhCCCceEEEeehhcccceeeccc
Confidence 78889999999986 6678888764 22321 2333344333333333444433332110 0000001112233332
Q ss_pred -CCCCChHHHhcCceEEEec---CCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHH--------HHH-----H-------
Q 018506 176 -PVSGGVLAAEAGTLTFMVG---GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAK--------ICN-----N------- 231 (355)
Q Consensus 176 -pv~g~~~~~~~g~~~~~~g---g~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~K--------l~~-----n------- 231 (355)
|...-. .+.+. .++.| ++....+.+..++...|-.+..+..+-.|+..- +.. |
T Consensus 159 ~p~~alT-kavKk--riYlgs~~~ns~~~e~l~~v~aq~~I~v~~~esp~~AEtrnit~YVHpPlflndfsL~aif~~~~ 235 (431)
T COG4408 159 QPNRALT-KAVKK--RIYLGSQHGNSGSAEMLTAVLAQHGIDVEPCESPLAAETRNITLYVHPPLFLNDFSLQAIFYPEQ 235 (431)
T ss_pred CcchHHH-HHHhH--heeeccCCCCChHHHHHHHHHHhcCCceEEcCChhhhhhcccceeecCcchhhhhHHHHHhCCcC
Confidence 111111 11122 24444 455677889999999987666554433333221 000 0
Q ss_pred ----------------HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccc-------ccCCCCCCCcccC----
Q 018506 232 ----------------LTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWS-------SDSYNPVPGVMEG---- 284 (355)
Q Consensus 232 ----------------~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~-------~~~~~~~~~~~~~---- 284 (355)
.+..-+.....|.+.+..+.|+..-.++..+++---.... .+.+...+.....
T Consensus 236 ~p~yvYKlyPEGPIt~~lIr~mr~lwke~m~ll~r~~ve~iNLLrFl~ddNYPV~~e~l~r~dId~F~~~~~i~QeYlLf 315 (431)
T COG4408 236 RPQYVYKLYPEGPITPALIRDMRGLWKEYMRLLNRLGVEEINLLRFLNDDNYPVRAEMLSRRDIDEFPQLPPIEQEYLLF 315 (431)
T ss_pred CCceeEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHhccCCCCcChhhcCccchhhcccCChHHHHHHHH
Confidence 1122356678899999999999988888888753100000 0011110100000
Q ss_pred ----CCCCCCCCC--------Cc----------------chhhHH-HH---HHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 018506 285 ----VPASRNYGG--------GF----------------ASKLMA-KD---LNLALASAKEVGVDCPLTSQAQDIYAKLC 332 (355)
Q Consensus 285 ----~~~~~~~~~--------~~----------------~~~~~~-kd---~~~~~~~a~~~gv~~pi~~~~~~~~~~~~ 332 (355)
.++-+.|++ +| .+..+. .| +..+..+|..+++++|..+.....|+.+.
T Consensus 316 VRYtalLvDPfS~pDEqG~yfDFSAVpfr~Vy~de~gl~~lPRvP~EDy~kla~iq~la~~l~v~~Pt~dq~lt~ye~a~ 395 (431)
T COG4408 316 VRYTALLVDPFSTPDEQGRYFDFSAVPFRTVYQDENGLWHLPRVPLEDYYKLATIQLLAGALDVVMPTADQLLTRYEQAL 395 (431)
T ss_pred HHHHHHhcCCCCCccccCccccccccceeeeeecccccccCCCCcHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Confidence 000011110 01 112222 22 35668899999999999999999999998
Q ss_pred HC
Q 018506 333 EN 334 (355)
Q Consensus 333 ~~ 334 (355)
++
T Consensus 396 k~ 397 (431)
T COG4408 396 KA 397 (431)
T ss_pred HH
Confidence 85
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0016 Score=65.85 Aligned_cols=74 Identities=14% Similarity=0.306 Sum_probs=57.7
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCC---CCHHHH-----hhcCCEEEEeCCCchHHH
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK---ETPFEV-----AEASDVVITMLPSSSHVL 116 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~---~s~~e~-----~~~aDiVi~~v~~~~~~~ 116 (355)
.-.|-|+|+|.+|..+++.|.+.|++|++.|.|+++++.+++.+.... .+..+. ++++|.++++++++....
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~ 496 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAG 496 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHH
Confidence 357999999999999999999999999999999999999988764321 112222 358999999998865433
Q ss_pred HH
Q 018506 117 DV 118 (355)
Q Consensus 117 ~v 118 (355)
.+
T Consensus 497 ~i 498 (558)
T PRK10669 497 EI 498 (558)
T ss_pred HH
Confidence 33
|
|
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00073 Score=63.80 Aligned_cols=63 Identities=22% Similarity=0.359 Sum_probs=47.0
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCC--cEEEEeCChhHHHHH----HhC-----CCCCC--CCHHHHhhcCCEEEEeC
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMKMF----SDM-----GVPTK--ETPFEVAEASDVVITML 109 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~--~V~v~dr~~~~~~~l----~~~-----g~~~~--~s~~e~~~~aDiVi~~v 109 (355)
+||+|||+|.+|+.+|..|...+. ++.++|+++++++.. ... ...+. .+. +.+++||+||++.
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy-~~~~daDiVVitA 113 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDY-AVTAGSDLCIVTA 113 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCH-HHhCCCCEEEECC
Confidence 699999999999999999998875 699999988765332 221 12222 233 4478999999995
|
|
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0012 Score=60.10 Aligned_cols=76 Identities=17% Similarity=0.220 Sum_probs=60.1
Q ss_pred CCceEEEEcccHH-hHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 44 QFESVGFIGLGNM-GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~G~m-G~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
.-.+|.|||.|.. |.+++..|.+.|..|++++.. +.++.+.++++|+||++++.+..+..
T Consensus 157 ~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~--------------t~~l~~~~~~ADIVV~avG~~~~i~~----- 217 (285)
T PRK14189 157 RGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK--------------TRDLAAHTRQADIVVAAVGKRNVLTA----- 217 (285)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC--------------CCCHHHHhhhCCEEEEcCCCcCccCH-----
Confidence 4478999999999 999999999999999998642 34677888999999999997743322
Q ss_pred CccccCCCCCCCeEEEEcCCCC
Q 018506 123 NGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.+++ ++.++||.+...
T Consensus 218 -~~ik-----~gavVIDVGin~ 233 (285)
T PRK14189 218 -DMVK-----PGATVIDVGMNR 233 (285)
T ss_pred -HHcC-----CCCEEEEccccc
Confidence 2443 567999987654
|
|
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00081 Score=62.60 Aligned_cols=65 Identities=23% Similarity=0.243 Sum_probs=47.1
Q ss_pred ceEEEEcc-cHHhHHHHHHHHHCCCc--EEEEeCCh--hHHHH----HHh----CC----CCCCCCHHHHhhcCCEEEEe
Q 018506 46 ESVGFIGL-GNMGFRMASNLMKAGYK--MAVHDVNC--NVMKM----FSD----MG----VPTKETPFEVAEASDVVITM 108 (355)
Q Consensus 46 mkIgiIG~-G~mG~~ia~~L~~~G~~--V~v~dr~~--~~~~~----l~~----~g----~~~~~s~~e~~~~aDiVi~~ 108 (355)
|||+|||+ |.+|..++..|+..|+. |+++||++ ++++. +.+ .+ +...++ .+.++++|+||++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d-~~~l~~aDiViit 79 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSD-LSDVAGSDIVIIT 79 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCC-HHHhCCCCEEEEe
Confidence 79999998 99999999999999874 99999954 43321 111 12 112334 4568899999999
Q ss_pred CCC
Q 018506 109 LPS 111 (355)
Q Consensus 109 v~~ 111 (355)
+..
T Consensus 80 ag~ 82 (309)
T cd05294 80 AGV 82 (309)
T ss_pred cCC
Confidence 853
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00054 Score=63.60 Aligned_cols=63 Identities=17% Similarity=0.344 Sum_probs=47.4
Q ss_pred eEEEEcccHHhHHHHHHHHHCCC--cEEEEeCChhHHHH----HHhC-------CCCCCCCHHHHhhcCCEEEEeC
Q 018506 47 SVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMKM----FSDM-------GVPTKETPFEVAEASDVVITML 109 (355)
Q Consensus 47 kIgiIG~G~mG~~ia~~L~~~G~--~V~v~dr~~~~~~~----l~~~-------g~~~~~s~~e~~~~aDiVi~~v 109 (355)
||+|||+|.+|..+|..|+..+. ++.++|+++++++. +... ......+..+.+++||+||++.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvita 76 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITA 76 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECC
Confidence 79999999999999999998875 79999998776532 2221 1122233457788999999986
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0026 Score=49.91 Aligned_cols=67 Identities=24% Similarity=0.353 Sum_probs=51.6
Q ss_pred EEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCC----CCHHH----HhhcCCEEEEeCCCchH
Q 018506 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK----ETPFE----VAEASDVVITMLPSSSH 114 (355)
Q Consensus 48 IgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~----~s~~e----~~~~aDiVi~~v~~~~~ 114 (355)
|-|+|.|.+|..+++.|.+.+.+|++.++++++++.+.+.+..+. .+... -+++++.|+++.+++..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~ 75 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEE 75 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHH
Confidence 568999999999999999977799999999999999998874321 12221 13678999999887643
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00078 Score=57.31 Aligned_cols=62 Identities=18% Similarity=0.211 Sum_probs=49.4
Q ss_pred EEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCC-----C--CCCHHHHhhcCCEEEEeCCC
Q 018506 48 VGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-----T--KETPFEVAEASDVVITMLPS 111 (355)
Q Consensus 48 IgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~-----~--~~s~~e~~~~aDiVi~~v~~ 111 (355)
|.|+|+ |.+|..+++.|.+.||+|++..|++++.+. ..+++ . .++..++++++|.||.+++.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~ 70 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED--SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP 70 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc--ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence 689985 999999999999999999999999998876 32221 1 12345677899999999864
|
... |
| >PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00082 Score=65.39 Aligned_cols=67 Identities=21% Similarity=0.199 Sum_probs=47.1
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLP 110 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~ 110 (355)
...+|.|||+|.+|.++|+.|.+.|++|+++|++++.........-....+.....+++|+||.+.+
T Consensus 2 ~~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~g 68 (418)
T PRK00683 2 GLQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPG 68 (418)
T ss_pred CCCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCC
Confidence 3468999999999999999999999999999988764432110000112233344467999998863
|
|
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0017 Score=60.79 Aligned_cols=70 Identities=14% Similarity=0.156 Sum_probs=54.4
Q ss_pred CCCceEEEEcc-cHHhHHHHHHHHHC-C-CcEEEEeCChhHHHHHHhC-CCCCCCCHHHHhhcCCEEEEeCCCc
Q 018506 43 CQFESVGFIGL-GNMGFRMASNLMKA-G-YKMAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 43 ~~~mkIgiIG~-G~mG~~ia~~L~~~-G-~~V~v~dr~~~~~~~l~~~-g~~~~~s~~e~~~~aDiVi~~v~~~ 112 (355)
...++|.|+|+ |.||+.+++.|.++ | .++++++|+++++..+.+. +.....+..+++.++|+||.+...+
T Consensus 153 l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~~ 226 (340)
T PRK14982 153 LSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASMP 226 (340)
T ss_pred cCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcCC
Confidence 34578999998 89999999999864 4 5899999999888887653 2122236778888999999887654
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0015 Score=60.93 Aligned_cols=65 Identities=26% Similarity=0.317 Sum_probs=46.5
Q ss_pred ceEEEEcc-cHHhHHHHHHHHH---CCCcEEEEeCChhHH---HHHHhCC--CCC----CCCHHHHhhcCCEEEEeCC
Q 018506 46 ESVGFIGL-GNMGFRMASNLMK---AGYKMAVHDVNCNVM---KMFSDMG--VPT----KETPFEVAEASDVVITMLP 110 (355)
Q Consensus 46 mkIgiIG~-G~mG~~ia~~L~~---~G~~V~v~dr~~~~~---~~l~~~g--~~~----~~s~~e~~~~aDiVi~~v~ 110 (355)
|||+|||+ |.+|.+++..|.. .++++.++||++... -.+.+.+ ... .+++.+.++++|+||+|.-
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG 78 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAG 78 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCC
Confidence 79999999 9999999998854 346899999875431 1232211 111 3455678889999999974
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0012 Score=61.64 Aligned_cols=65 Identities=18% Similarity=0.250 Sum_probs=51.0
Q ss_pred ceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCC-------CCCHHHHhhcCCEEEEeCC
Q 018506 46 ESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT-------KETPFEVAEASDVVITMLP 110 (355)
Q Consensus 46 mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~-------~~s~~e~~~~aDiVi~~v~ 110 (355)
|||.|.| .|.+|+.+++.|.++||+|.+..|++++...+...++.. ..+..++++++|+||-++.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 6899998 699999999999999999999999987765554444322 2245567789999998754
|
|
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0032 Score=55.88 Aligned_cols=68 Identities=22% Similarity=0.204 Sum_probs=50.4
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC---cEEEEeCC----hhHH-------HHHHh-CCC-CCCCCHHHHhhcCCEEEE
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY---KMAVHDVN----CNVM-------KMFSD-MGV-PTKETPFEVAEASDVVIT 107 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~---~V~v~dr~----~~~~-------~~l~~-~g~-~~~~s~~e~~~~aDiVi~ 107 (355)
+.+||.|+|+|.+|.+++..|.+.|. +|+++||+ .++. +.+.+ .+. ....++.++++++|++|-
T Consensus 24 ~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dvlIg 103 (226)
T cd05311 24 EEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADVFIG 103 (226)
T ss_pred cCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCEEEe
Confidence 44789999999999999999999996 49999998 4442 23332 111 111367688889999999
Q ss_pred eCCC
Q 018506 108 MLPS 111 (355)
Q Consensus 108 ~v~~ 111 (355)
+.+.
T Consensus 104 aT~~ 107 (226)
T cd05311 104 VSRP 107 (226)
T ss_pred CCCC
Confidence 9863
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >PF08546 ApbA_C: Ketopantoate reductase PanE/ApbA C terminal; InterPro: IPR013752 This is the C-terminal domain of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, 1 | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00067 Score=54.22 Aligned_cols=84 Identities=15% Similarity=0.235 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHcCCC--HHHHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHH
Q 018506 236 VSMLGVSEALTLGQSLGIS--ASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKE 313 (355)
Q Consensus 236 ~~~~~~~Ea~~la~~~Gi~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~ 313 (355)
....++.|++.++++.|++ .+.+.+.+......... ...++..++..|++.+-++. .+++++.|++
T Consensus 39 ~~~~l~~E~~~va~a~G~~l~~~~~~~~~~~~~~~~~~-~~~SM~~D~~~gr~tEid~i-----------~G~vv~~a~~ 106 (125)
T PF08546_consen 39 LIRALMREVIAVARALGIPLDPDDLEEAIERLIRSTPD-NRSSMLQDIEAGRPTEIDYI-----------NGYVVRLAKK 106 (125)
T ss_dssp HHHHHHHHHHHHHHHTTSS--HHHHHHHHHHHHHCTTT-T--HHHHHHHTTB--SHHHT-----------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCC-ccccHHHHHHHcccccHHHH-----------HHHHHHHHHH
Confidence 3556778999999999964 44344444322111000 00011122333333333332 3589999999
Q ss_pred hCCCChHHHHHHHHHHHH
Q 018506 314 VGVDCPLTSQAQDIYAKL 331 (355)
Q Consensus 314 ~gv~~pi~~~~~~~~~~~ 331 (355)
+|+++|.++.++++++..
T Consensus 107 ~gv~~P~~~~i~~lvk~~ 124 (125)
T PF08546_consen 107 HGVPTPVNETIYALVKAI 124 (125)
T ss_dssp TT---HHHHHHHHHHHHH
T ss_pred HCCCCcHHHHHHHHHHHh
Confidence 999999999999988753
|
1.1.169 from EC. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) = 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway []. ApbA and PanE are allelic []. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway []. ; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 1YJQ_A 1KS9_A 2OFP_A 1YON_A 2EW2_B 3EGO_B 3HN2_D 3GHY_B 3G17_E 3HWR_B .... |
| >PRK06270 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.018 Score=54.45 Aligned_cols=68 Identities=25% Similarity=0.405 Sum_probs=45.8
Q ss_pred CceEEEEcccHHhHHHHHHHHHC--------C--CcE-EEEeCC----------hhHHHHHHhC-CC-C------CCCCH
Q 018506 45 FESVGFIGLGNMGFRMASNLMKA--------G--YKM-AVHDVN----------CNVMKMFSDM-GV-P------TKETP 95 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~--------G--~~V-~v~dr~----------~~~~~~l~~~-g~-~------~~~s~ 95 (355)
.+||+|+|+|.||..+++.|.+. | .+| .++|++ .+++..+.+. +. . .+.+.
T Consensus 2 ~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~ 81 (341)
T PRK06270 2 EMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISG 81 (341)
T ss_pred eEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCH
Confidence 47899999999999999999865 3 453 456753 3444444332 21 1 13477
Q ss_pred HHHhh--cCCEEEEeCCCc
Q 018506 96 FEVAE--ASDVVITMLPSS 112 (355)
Q Consensus 96 ~e~~~--~aDiVi~~v~~~ 112 (355)
.+++. +.|+|+.|+|+.
T Consensus 82 ~ell~~~~~DvVvd~T~s~ 100 (341)
T PRK06270 82 LEVIRSVDADVVVEATPTN 100 (341)
T ss_pred HHHhhccCCCEEEECCcCc
Confidence 77773 689999999863
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0024 Score=54.29 Aligned_cols=32 Identities=28% Similarity=0.534 Sum_probs=29.6
Q ss_pred eEEEEcccHHhHHHHHHHHHCCCc-EEEEeCCh
Q 018506 47 SVGFIGLGNMGFRMASNLMKAGYK-MAVHDVNC 78 (355)
Q Consensus 47 kIgiIG~G~mG~~ia~~L~~~G~~-V~v~dr~~ 78 (355)
||.|||+|.+|+.++..|++.|.. ++++|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 689999999999999999999985 99999875
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0011 Score=57.82 Aligned_cols=36 Identities=28% Similarity=0.286 Sum_probs=32.0
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCCh
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNC 78 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~ 78 (355)
....||.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 19 l~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 345789999999999999999999997 799999874
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0011 Score=63.80 Aligned_cols=65 Identities=26% Similarity=0.386 Sum_probs=47.9
Q ss_pred EEEEcccHHhHHHHHHHHHCC-C-cEEEEeCChhHHHHHHhC--C-------CCCC--CCHHHHhhcCCEEEEeCCCc
Q 018506 48 VGFIGLGNMGFRMASNLMKAG-Y-KMAVHDVNCNVMKMFSDM--G-------VPTK--ETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 48 IgiIG~G~mG~~ia~~L~~~G-~-~V~v~dr~~~~~~~l~~~--g-------~~~~--~s~~e~~~~aDiVi~~v~~~ 112 (355)
|.|+|+|.+|+.+++.|++.+ + +|++.||+.++++++.+. + +.+. .++.++++++|+||.|++..
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~ 78 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF 78 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc
Confidence 789999999999999999987 4 799999999999888752 1 1111 13456778999999999754
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.002 Score=58.64 Aligned_cols=76 Identities=14% Similarity=0.176 Sum_probs=60.4
Q ss_pred CCceEEEEcccH-HhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 44 QFESVGFIGLGN-MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~G~-mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
.-.+|.|||-+. +|.+++..|.+.|..|+++++. +.++.+.++++|+||.++..+..+..
T Consensus 158 ~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~--------------T~~l~~~~~~ADIvi~avG~p~~v~~----- 218 (285)
T PRK10792 158 YGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRF--------------TKNLRHHVRNADLLVVAVGKPGFIPG----- 218 (285)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECC--------------CCCHHHHHhhCCEEEEcCCCcccccH-----
Confidence 347899999999 9999999999999999999864 24678888999999999976644333
Q ss_pred CccccCCCCCCCeEEEEcCCCC
Q 018506 123 NGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.+++ ++.+|||.+...
T Consensus 219 -~~vk-----~gavVIDvGin~ 234 (285)
T PRK10792 219 -EWIK-----PGAIVIDVGINR 234 (285)
T ss_pred -HHcC-----CCcEEEEccccc
Confidence 2443 567999987654
|
|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0032 Score=52.53 Aligned_cols=78 Identities=15% Similarity=0.231 Sum_probs=54.5
Q ss_pred CCCceEEEEcccH-HhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcC
Q 018506 43 CQFESVGFIGLGN-MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 121 (355)
Q Consensus 43 ~~~mkIgiIG~G~-mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~ 121 (355)
...++|.|||-+. +|.+++..|.++|..|++++... .++.+.++.||+||.++..+..++.
T Consensus 34 l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T--------------~~l~~~~~~ADIVVsa~G~~~~i~~---- 95 (160)
T PF02882_consen 34 LEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT--------------KNLQEITRRADIVVSAVGKPNLIKA---- 95 (160)
T ss_dssp TTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS--------------SSHHHHHTTSSEEEE-SSSTT-B-G----
T ss_pred CCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC--------------CcccceeeeccEEeeeecccccccc----
Confidence 4567899999885 99999999999999999998643 4677888899999999987644322
Q ss_pred CCccccCCCCCCCeEEEEcCCCCH
Q 018506 122 PNGLLQGGNSVRPQLLIDSSTIDP 145 (355)
Q Consensus 122 ~~~~l~~~~~~~~~ivi~~st~~~ 145 (355)
.+++ ++.++||++....
T Consensus 96 --~~ik-----~gavVIDvG~~~~ 112 (160)
T PF02882_consen 96 --DWIK-----PGAVVIDVGINYV 112 (160)
T ss_dssp --GGS------TTEEEEE--CEEE
T ss_pred --cccc-----CCcEEEecCCccc
Confidence 2443 5689999987655
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0014 Score=60.80 Aligned_cols=65 Identities=20% Similarity=0.211 Sum_probs=46.1
Q ss_pred ceEEEEcc-cHHhHHHHHHHHHCCC--cEEEEeCChhH--HHHHHhC----CCCCC---CCHHHHhhcCCEEEEeCC
Q 018506 46 ESVGFIGL-GNMGFRMASNLMKAGY--KMAVHDVNCNV--MKMFSDM----GVPTK---ETPFEVAEASDVVITMLP 110 (355)
Q Consensus 46 mkIgiIG~-G~mG~~ia~~L~~~G~--~V~v~dr~~~~--~~~l~~~----g~~~~---~s~~e~~~~aDiVi~~v~ 110 (355)
|||+|||+ |++|+.+|..|+..+. ++.++|++..+ +..+.+. .+... +++.+.++++|+||++.-
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG 77 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAG 77 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCC
Confidence 79999999 9999999999998884 79999987111 1123321 11111 234678899999999963
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.00092 Score=56.48 Aligned_cols=94 Identities=16% Similarity=0.134 Sum_probs=60.3
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCC--------------------------CCHHH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK--------------------------ETPFE 97 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~--------------------------~s~~e 97 (355)
...||.|+|.|+.|..-+..+...|++|+++|.++++.+.+...+.... ....+
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 98 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFAE 98 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHHH
Confidence 3478999999999999999999999999999999998887776543211 12345
Q ss_pred HhhcCCEEEEeC--CCchHHHHHhcCCCccccCCCCCCCeEEEEcCC
Q 018506 98 VAEASDVVITML--PSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSST 142 (355)
Q Consensus 98 ~~~~aDiVi~~v--~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st 142 (355)
.++.+|+||.+. +... ...++.. ..++.++ ++.+|+|.|-
T Consensus 99 ~i~~~d~vI~~~~~~~~~-~P~lvt~--~~~~~m~--~gsvIvDis~ 140 (168)
T PF01262_consen 99 FIAPADIVIGNGLYWGKR-APRLVTE--EMVKSMK--PGSVIVDISC 140 (168)
T ss_dssp HHHH-SEEEEHHHBTTSS----SBEH--HHHHTSS--TTEEEEETTG
T ss_pred HHhhCcEEeeecccCCCC-CCEEEEh--HHhhccC--CCceEEEEEe
Confidence 667899999764 2221 1111111 1222222 5678998864
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >PRK10206 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0023 Score=60.63 Aligned_cols=76 Identities=12% Similarity=0.124 Sum_probs=53.2
Q ss_pred CceEEEEcccHHhH-HHHHHHHH--CCCcE-EEEeCChhHHHHHHhCC-CCCCCCHHHHhh--cCCEEEEeCCCchHHHH
Q 018506 45 FESVGFIGLGNMGF-RMASNLMK--AGYKM-AVHDVNCNVMKMFSDMG-VPTKETPFEVAE--ASDVVITMLPSSSHVLD 117 (355)
Q Consensus 45 ~mkIgiIG~G~mG~-~ia~~L~~--~G~~V-~v~dr~~~~~~~l~~~g-~~~~~s~~e~~~--~aDiVi~~v~~~~~~~~ 117 (355)
+.||||||+|.++. ..+..+.. .+.+| .++|+++++.+...+.+ ....++.+++++ +.|+|++|+|.....+-
T Consensus 1 ~irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~H~~~ 80 (344)
T PRK10206 1 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFEY 80 (344)
T ss_pred CeEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchHHHHH
Confidence 46899999999775 33454533 24665 57899886653333333 567789999985 57999999998876665
Q ss_pred Hhc
Q 018506 118 VYN 120 (355)
Q Consensus 118 vl~ 120 (355)
+..
T Consensus 81 ~~~ 83 (344)
T PRK10206 81 AKR 83 (344)
T ss_pred HHH
Confidence 544
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0028 Score=55.20 Aligned_cols=74 Identities=19% Similarity=0.146 Sum_probs=50.2
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh-HHHHHHhCC-CCCCC--CHHHHhhcCCEEEEeCCCchHHHHH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN-VMKMFSDMG-VPTKE--TPFEVAEASDVVITMLPSSSHVLDV 118 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~-~~~~l~~~g-~~~~~--s~~e~~~~aDiVi~~v~~~~~~~~v 118 (355)
...+|-|||.|.+|...++.|.+.|++|++++++.. .+..+.+.+ +.... -..+.+.++|+||.|+.++ .+...
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~-elN~~ 86 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDP-RVNEQ 86 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCH-HHHHH
Confidence 457899999999999999999999999999987643 334444332 21111 1122346788888887765 44443
|
|
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0081 Score=59.19 Aligned_cols=65 Identities=22% Similarity=0.344 Sum_probs=49.2
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh-----HHHHHHhCCCCCC--CCHHHHhhcCCEEEEeC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN-----VMKMFSDMGVPTK--ETPFEVAEASDVVITML 109 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~-----~~~~l~~~g~~~~--~s~~e~~~~aDiVi~~v 109 (355)
.+||+|+|+|..|.++|+.|.+.|++|+++|+++. ..+.+.+.|+... ....+.+.++|+||.+.
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~Sp 85 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKTP 85 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEECC
Confidence 36899999999999999999999999999997652 2244666665442 22235457899999883
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0027 Score=58.16 Aligned_cols=76 Identities=12% Similarity=0.210 Sum_probs=56.8
Q ss_pred CCceEEEEcccH-HhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 44 QFESVGFIGLGN-MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~G~-mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
.-.+|.|||.|. .|.+++..|.+.|.+|++++|.. .++.+.++++|+||.+++.+..+..
T Consensus 158 ~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t--------------~~L~~~~~~aDIvI~AtG~~~~v~~----- 218 (283)
T PRK14192 158 AGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT--------------QNLPELVKQADIIVGAVGKPELIKK----- 218 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc--------------hhHHHHhccCCEEEEccCCCCcCCH-----
Confidence 446899999998 99999999999999999999732 2455666899999999965532111
Q ss_pred CccccCCCCCCCeEEEEcCCCC
Q 018506 123 NGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.+++ ++.+++|.....
T Consensus 219 -~~lk-----~gavViDvg~n~ 234 (283)
T PRK14192 219 -DWIK-----QGAVVVDAGFHP 234 (283)
T ss_pred -HHcC-----CCCEEEEEEEee
Confidence 2332 457888886553
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0015 Score=61.01 Aligned_cols=70 Identities=14% Similarity=0.146 Sum_probs=48.0
Q ss_pred CCCCceEEEEcc-cHHhHHHHHHHHHCC--CcEEEEeCChhHH--HHHHhCC----CCCCCC---HHHHhhcCCEEEEeC
Q 018506 42 SCQFESVGFIGL-GNMGFRMASNLMKAG--YKMAVHDVNCNVM--KMFSDMG----VPTKET---PFEVAEASDVVITML 109 (355)
Q Consensus 42 ~~~~mkIgiIG~-G~mG~~ia~~L~~~G--~~V~v~dr~~~~~--~~l~~~g----~~~~~s---~~e~~~~aDiVi~~v 109 (355)
-.+|.||+|||+ |.+|+.++..|+..+ +++.++|++.... ..+.+.. +...++ ..++++++|+||++.
T Consensus 5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVita 84 (321)
T PTZ00325 5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICA 84 (321)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECC
Confidence 357789999999 999999999999655 5899999843221 1222211 111212 267889999999996
Q ss_pred CC
Q 018506 110 PS 111 (355)
Q Consensus 110 ~~ 111 (355)
-.
T Consensus 85 G~ 86 (321)
T PTZ00325 85 GV 86 (321)
T ss_pred CC
Confidence 33
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0045 Score=61.06 Aligned_cols=65 Identities=22% Similarity=0.211 Sum_probs=52.8
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCC--C---------------C----------HHH
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK--E---------------T----------PFE 97 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~--~---------------s----------~~e 97 (355)
..|+.|+|+|.+|...+..+...|..|+++|+++++.+.....|.... + + ..+
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e 243 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAA 243 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHHH
Confidence 368999999999999999999999999999999999888777664430 0 1 234
Q ss_pred HhhcCCEEEEeC
Q 018506 98 VAEASDVVITML 109 (355)
Q Consensus 98 ~~~~aDiVi~~v 109 (355)
.++++|+||.++
T Consensus 244 ~~~~~DIVI~Ta 255 (511)
T TIGR00561 244 QAKEVDIIITTA 255 (511)
T ss_pred HhCCCCEEEECc
Confidence 467899999998
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0031 Score=64.42 Aligned_cols=76 Identities=20% Similarity=0.263 Sum_probs=59.7
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCC----CCHHH----HhhcCCEEEEeCCCchHHH
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK----ETPFE----VAEASDVVITMLPSSSHVL 116 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~----~s~~e----~~~~aDiVi~~v~~~~~~~ 116 (355)
..+|-|+|.|.+|..+++.|.+.|+++++.|.|+++++.+++.|..+. ++++- -++++|.+|+++++++.-.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~ 479 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSL 479 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHH
Confidence 468999999999999999999999999999999999999988765431 22221 1358999999998875544
Q ss_pred HHhc
Q 018506 117 DVYN 120 (355)
Q Consensus 117 ~vl~ 120 (355)
.+..
T Consensus 480 ~i~~ 483 (621)
T PRK03562 480 QLVE 483 (621)
T ss_pred HHHH
Confidence 4433
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0023 Score=56.89 Aligned_cols=63 Identities=19% Similarity=0.324 Sum_probs=49.0
Q ss_pred EEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChh--HHHHHHhCCCCCC-------CCHHHHhhcCCEEEEeCC
Q 018506 48 VGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCN--VMKMFSDMGVPTK-------ETPFEVAEASDVVITMLP 110 (355)
Q Consensus 48 IgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~--~~~~l~~~g~~~~-------~s~~e~~~~aDiVi~~v~ 110 (355)
|.|+|+ |.+|+.++..|.+.+|+|.+.-|++. ..+.+.+.|+... +++.++++++|.||++++
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~ 73 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTP 73 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESS
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecC
Confidence 789985 99999999999999999999999864 3566776665421 234456778888888877
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0033 Score=60.17 Aligned_cols=92 Identities=15% Similarity=0.186 Sum_probs=59.7
Q ss_pred CCCceEEEEcc-cHHhHHHHHHHHHC-CCcEEEEeCChhHHHHHHhCC-------CCCCCCHH-HHhhcCCEEEEeCCCc
Q 018506 43 CQFESVGFIGL-GNMGFRMASNLMKA-GYKMAVHDVNCNVMKMFSDMG-------VPTKETPF-EVAEASDVVITMLPSS 112 (355)
Q Consensus 43 ~~~mkIgiIG~-G~mG~~ia~~L~~~-G~~V~v~dr~~~~~~~l~~~g-------~~~~~s~~-e~~~~aDiVi~~v~~~ 112 (355)
.+++||+|+|+ |..|..+.+.|.++ +++|+.+.++.+.-+.+.+.. .....+.+ +.++++|+||+|+|..
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~ 115 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHG 115 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHH
Confidence 35679999987 99999999999988 678888876544322222211 11111112 2247899999999975
Q ss_pred hHHHHHhcCCCccccCCCCCCCeEEEEcCCCC
Q 018506 113 SHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 113 ~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~ 144 (355)
...++... +. .+..|||.|+..
T Consensus 116 -~s~~i~~~----~~-----~g~~VIDlSs~f 137 (381)
T PLN02968 116 -TTQEIIKA----LP-----KDLKIVDLSADF 137 (381)
T ss_pred -HHHHHHHH----Hh-----CCCEEEEcCchh
Confidence 44554433 21 346899999865
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0031 Score=59.43 Aligned_cols=35 Identities=29% Similarity=0.476 Sum_probs=31.7
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCCh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNC 78 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~ 78 (355)
...+|.|||+|.+|+.++..|+.+|+ .++++|++.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 34689999999999999999999998 799999875
|
|
| >PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0088 Score=59.18 Aligned_cols=65 Identities=22% Similarity=0.192 Sum_probs=49.9
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHH-HhCCCCCCC--CHHHHhhcCCEEEEe
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMF-SDMGVPTKE--TPFEVAEASDVVITM 108 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l-~~~g~~~~~--s~~e~~~~aDiVi~~ 108 (355)
..+||.|+|+|..|.++++.|.+.|++|+++|+++....++ .+.|+.... ...+.+.++|+||.+
T Consensus 14 ~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~S 81 (473)
T PRK00141 14 LSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTS 81 (473)
T ss_pred cCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeC
Confidence 44689999999999999999999999999999877665443 334655432 233445689999887
|
|
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0031 Score=57.62 Aligned_cols=69 Identities=20% Similarity=0.287 Sum_probs=52.1
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHhC----CC-CCCCCHHHH--hhcCCEEEEeCCCc
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM----GV-PTKETPFEV--AEASDVVITMLPSS 112 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~~----g~-~~~~s~~e~--~~~aDiVi~~v~~~ 112 (355)
...++.|+|+|-.+.+++..|++.|. +|+++||+.++.+++.+. +. .......+. ..++|+||-++|-.
T Consensus 125 ~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~G 201 (283)
T COG0169 125 TGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVG 201 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCC
Confidence 34779999999999999999999995 799999999999888763 11 111122221 12599999999865
|
|
| >KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0065 Score=56.11 Aligned_cols=78 Identities=22% Similarity=0.242 Sum_probs=63.6
Q ss_pred CCCceEEEEcccHHhHHHHHHHHH---CCCcE-EEEeCChhHHHHHHhC-CC---CCCCCHHHHhhcC--CEEEEeCCCc
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMK---AGYKM-AVHDVNCNVMKMFSDM-GV---PTKETPFEVAEAS--DVVITMLPSS 112 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~---~G~~V-~v~dr~~~~~~~l~~~-g~---~~~~s~~e~~~~a--DiVi~~v~~~ 112 (355)
....|+||+|+|.|+.-+++.|.. .+|.| .+.+|+.+++.++++. ++ ++..+.+|++++. |+|.+..|.+
T Consensus 4 s~~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVyi~~~~~ 83 (351)
T KOG2741|consen 4 SATIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVYISTPNP 83 (351)
T ss_pred CceeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCCCCccccCHHHHhcCCCcCEEEeCCCCc
Confidence 345789999999999999999884 46775 4779999999998873 33 5678999999766 9999999999
Q ss_pred hHHHHHhc
Q 018506 113 SHVLDVYN 120 (355)
Q Consensus 113 ~~~~~vl~ 120 (355)
+..+-+..
T Consensus 84 qH~evv~l 91 (351)
T KOG2741|consen 84 QHYEVVML 91 (351)
T ss_pred cHHHHHHH
Confidence 88776654
|
|
| >PRK08374 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0093 Score=56.20 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=20.3
Q ss_pred CceEEEEcccHHhHHHHHHHHH
Q 018506 45 FESVGFIGLGNMGFRMASNLMK 66 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~ 66 (355)
.++|+|+|+|++|+.+++.|.+
T Consensus 2 ~i~VaIiG~GnVG~~~~~~L~~ 23 (336)
T PRK08374 2 EVKVSIFGFGNVGRAVAEVLAE 23 (336)
T ss_pred eeEEEEECCCHHHHHHHHHHHH
Confidence 4799999999999999999887
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0049 Score=56.83 Aligned_cols=69 Identities=10% Similarity=0.091 Sum_probs=48.7
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCc-EEEEeCCh---hHHHHHHh----CCC--CC--C--C---CHHHHhhcCCEEE
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYK-MAVHDVNC---NVMKMFSD----MGV--PT--K--E---TPFEVAEASDVVI 106 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~-V~v~dr~~---~~~~~l~~----~g~--~~--~--~---s~~e~~~~aDiVi 106 (355)
+..++.|+|+|..|.+++..|++.|.. |++++|++ ++++++.+ .+. .. . + +..+.++.+|+||
T Consensus 125 ~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~DilI 204 (289)
T PRK12548 125 KGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDILV 204 (289)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCEEE
Confidence 345789999999999999999999986 99999997 56655443 111 11 1 1 1223445789999
Q ss_pred EeCCCc
Q 018506 107 TMLPSS 112 (355)
Q Consensus 107 ~~v~~~ 112 (355)
-++|-.
T Consensus 205 NaTp~G 210 (289)
T PRK12548 205 NATLVG 210 (289)
T ss_pred EeCCCC
Confidence 888743
|
|
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0026 Score=59.50 Aligned_cols=65 Identities=17% Similarity=0.286 Sum_probs=47.6
Q ss_pred CceEEEEcc-cHHhHHHHHHHHHCCC-------cEEEEeCCh--hHHH----HHHhC------CCCCCCCHHHHhhcCCE
Q 018506 45 FESVGFIGL-GNMGFRMASNLMKAGY-------KMAVHDVNC--NVMK----MFSDM------GVPTKETPFEVAEASDV 104 (355)
Q Consensus 45 ~mkIgiIG~-G~mG~~ia~~L~~~G~-------~V~v~dr~~--~~~~----~l~~~------g~~~~~s~~e~~~~aDi 104 (355)
-.||+|||+ |.+|..++..|...|. ++.++|+++ ++++ .+.+. +.....+..+.+++||+
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDv 82 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDA 82 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCE
Confidence 368999998 9999999999998874 799999954 3222 22221 12233456678899999
Q ss_pred EEEeC
Q 018506 105 VITML 109 (355)
Q Consensus 105 Vi~~v 109 (355)
||++.
T Consensus 83 VVitA 87 (323)
T TIGR01759 83 ALLVG 87 (323)
T ss_pred EEEeC
Confidence 99985
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.014 Score=57.55 Aligned_cols=67 Identities=24% Similarity=0.436 Sum_probs=50.0
Q ss_pred CCCceEEEEcccHHhHH-HHHHHHHCCCcEEEEeCChh-HHHHHHhCCCCCC-CCHHHHhhcCCEEEEeC
Q 018506 43 CQFESVGFIGLGNMGFR-MASNLMKAGYKMAVHDVNCN-VMKMFSDMGVPTK-ETPFEVAEASDVVITML 109 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~-ia~~L~~~G~~V~v~dr~~~-~~~~l~~~g~~~~-~s~~e~~~~aDiVi~~v 109 (355)
.+.++|.|||+|..|.+ +|+.|.+.|++|+++|.++. ..+.+.+.|+... ....+.+.++|+||++-
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~sp 74 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSS 74 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECC
Confidence 34568999999999999 89999999999999997543 3445666666442 22334556899999873
|
|
| >PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0049 Score=60.76 Aligned_cols=64 Identities=19% Similarity=0.202 Sum_probs=49.1
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEe
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITM 108 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~ 108 (355)
.+||.|||+|..|.+.|..|.+.|++|.++|+.+.....+.+.|+.......+.+.++|+||.+
T Consensus 9 ~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~s 72 (460)
T PRK01390 9 GKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLS 72 (460)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEEC
Confidence 4689999999999999999999999999999876555556556665433222345689998865
|
|
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0064 Score=55.45 Aligned_cols=76 Identities=13% Similarity=0.201 Sum_probs=59.2
Q ss_pred CCceEEEEcccH-HhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 44 QFESVGFIGLGN-MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~G~-mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
.-.++.|||-+. +|.+++..|.+.|..|++++.. +.++.+.++++|+||.++..+..+..
T Consensus 163 ~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~--------------T~~l~~~~~~ADIvv~AvG~p~~i~~----- 223 (287)
T PRK14176 163 EGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVF--------------TDDLKKYTLDADILVVATGVKHLIKA----- 223 (287)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHCCCEEEEEecc--------------CCCHHHHHhhCCEEEEccCCccccCH-----
Confidence 347899999999 9999999999999999999842 23677888999999999876633222
Q ss_pred CccccCCCCCCCeEEEEcCCCC
Q 018506 123 NGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.+++ ++.+|||.+...
T Consensus 224 -~~vk-----~gavVIDvGin~ 239 (287)
T PRK14176 224 -DMVK-----EGAVIFDVGITK 239 (287)
T ss_pred -HHcC-----CCcEEEEecccc
Confidence 2443 567999998753
|
|
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.015 Score=57.81 Aligned_cols=65 Identities=20% Similarity=0.217 Sum_probs=51.7
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCC--CHHHHhhcCCEEEEeC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKE--TPFEVAEASDVVITML 109 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~--s~~e~~~~aDiVi~~v 109 (355)
..+|.|+|+|..|.+.++.|...|++|+++|++++..+.+.+.|+.... ...+.++++|+||.+-
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~Sp 78 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSP 78 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECC
Confidence 3689999999999999999999999999999887776666666664432 2345567899999884
|
|
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0022 Score=60.07 Aligned_cols=65 Identities=15% Similarity=0.288 Sum_probs=47.2
Q ss_pred CceEEEEcc-cHHhHHHHHHHHHCCC-------cEEEEeCChh--HHH----HHHhC------CCCCCCCHHHHhhcCCE
Q 018506 45 FESVGFIGL-GNMGFRMASNLMKAGY-------KMAVHDVNCN--VMK----MFSDM------GVPTKETPFEVAEASDV 104 (355)
Q Consensus 45 ~mkIgiIG~-G~mG~~ia~~L~~~G~-------~V~v~dr~~~--~~~----~l~~~------g~~~~~s~~e~~~~aDi 104 (355)
.+||+|||+ |.+|..+|..|...|. ++.++|++++ +++ .+.+. ......+..+.+++||+
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daDi 83 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDADV 83 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCCE
Confidence 469999998 9999999999987664 7999998543 221 22221 22334566688899999
Q ss_pred EEEeC
Q 018506 105 VITML 109 (355)
Q Consensus 105 Vi~~v 109 (355)
||++.
T Consensus 84 VVita 88 (326)
T PRK05442 84 ALLVG 88 (326)
T ss_pred EEEeC
Confidence 99985
|
|
| >cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.012 Score=52.30 Aligned_cols=101 Identities=19% Similarity=0.245 Sum_probs=64.2
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEE-EEeC----------ChhHHHHHHhC-C-------CCCCCCHHHH-hhcC
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMA-VHDV----------NCNVMKMFSDM-G-------VPTKETPFEV-AEAS 102 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~-v~dr----------~~~~~~~l~~~-g-------~~~~~s~~e~-~~~a 102 (355)
.+.++|+|.|.|++|..+++.|.+.|..|+ +.|. +.+.+....+. | .... +.++. -.+|
T Consensus 29 l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~-~~~~i~~~~~ 107 (227)
T cd01076 29 LAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERI-TNEELLELDC 107 (227)
T ss_pred ccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceec-CCccceeecc
Confidence 466899999999999999999999999987 6677 66666655442 2 1111 22222 2378
Q ss_pred CEEEEeCCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHh
Q 018506 103 DVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVS 156 (355)
Q Consensus 103 DiVi~~v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~ 156 (355)
|+++-|.+.+....+.+..+ +-++|+..++... + .+-.+.+.
T Consensus 108 Dvlip~a~~~~i~~~~~~~l----------~a~~I~egAN~~~-t-~~a~~~L~ 149 (227)
T cd01076 108 DILIPAALENQITADNADRI----------KAKIIVEAANGPT-T-PEADEILH 149 (227)
T ss_pred cEEEecCccCccCHHHHhhc----------eeeEEEeCCCCCC-C-HHHHHHHH
Confidence 99999986653333333221 2247777766654 2 33444444
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids |
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0023 Score=60.12 Aligned_cols=91 Identities=11% Similarity=0.092 Sum_probs=54.6
Q ss_pred CCceEEEEcc-cHHhHHHHHHHHHCCCcEEE--EeCChhHHHH---HHhCCCCCC-CCHHHHhhcCCEEEEeCCCchHHH
Q 018506 44 QFESVGFIGL-GNMGFRMASNLMKAGYKMAV--HDVNCNVMKM---FSDMGVPTK-ETPFEVAEASDVVITMLPSSSHVL 116 (355)
Q Consensus 44 ~~mkIgiIG~-G~mG~~ia~~L~~~G~~V~v--~dr~~~~~~~---l~~~g~~~~-~s~~e~~~~aDiVi~~v~~~~~~~ 116 (355)
+|+||+|+|+ |..|..+.+.|.+++|++.- +-.+.+...+ +......+. .+..+ ++++|++|+++|.. ...
T Consensus 3 ~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~~~l~~~~~~~~~-~~~vD~vFla~p~~-~s~ 80 (336)
T PRK05671 3 QPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAGKNLRVREVDSFD-FSQVQLAFFAAGAA-VSR 80 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCCcceEEeeCChHH-hcCCCEEEEcCCHH-HHH
Confidence 4589999986 99999999999988885321 2222222211 111111111 12233 47899999999964 334
Q ss_pred HHhcCCCccccCCCCCCCeEEEEcCCCC
Q 018506 117 DVYNGPNGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 117 ~vl~~~~~~l~~~~~~~~~ivi~~st~~ 144 (355)
..... ..+ .|..+||.|+..
T Consensus 81 ~~v~~---~~~-----~G~~VIDlS~~f 100 (336)
T PRK05671 81 SFAEK---ARA-----AGCSVIDLSGAL 100 (336)
T ss_pred HHHHH---HHH-----CCCeEEECchhh
Confidence 43332 222 356899998755
|
|
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0021 Score=59.24 Aligned_cols=64 Identities=25% Similarity=0.351 Sum_probs=46.3
Q ss_pred ceEEEEcccHHhHHHHHHHHHCC--CcEEEEeCChhHHHH----HHhC------CCCCCC-CHHHHhhcCCEEEEeC
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAG--YKMAVHDVNCNVMKM----FSDM------GVPTKE-TPFEVAEASDVVITML 109 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G--~~V~v~dr~~~~~~~----l~~~------g~~~~~-s~~e~~~~aDiVi~~v 109 (355)
+||+|||+|.+|+++|..|...+ .++.++|+..++.+- +.+. ...... ...+.++++|+|+++.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitA 77 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITA 77 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeC
Confidence 68999999999999999998765 479999998554332 2221 112222 2256778999999997
|
|
| >PRK05472 redox-sensing transcriptional repressor Rex; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0018 Score=56.92 Aligned_cols=70 Identities=21% Similarity=0.293 Sum_probs=48.1
Q ss_pred CCceEEEEcccHHhHHHHHHHH--HCCCcEE-EEeCChhHHHHHHh-CCCCCCCCHHHHhhc--CCEEEEeCCCch
Q 018506 44 QFESVGFIGLGNMGFRMASNLM--KAGYKMA-VHDVNCNVMKMFSD-MGVPTKETPFEVAEA--SDVVITMLPSSS 113 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~--~~G~~V~-v~dr~~~~~~~l~~-~g~~~~~s~~e~~~~--aDiVi~~v~~~~ 113 (355)
...+|+|||+|.+|..++..+. ..|+++. ++|+++++...... ..+...+++.+.++. .|+|++|+|...
T Consensus 83 ~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~ 158 (213)
T PRK05472 83 RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKIGGIPVYHIDELEEVVKENDIEIGILTVPAEA 158 (213)
T ss_pred CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEeCCeEEcCHHHHHHHHHHCCCCEEEEeCCchh
Confidence 3468999999999999998643 4577765 56888776543221 112233456666644 999999999763
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.009 Score=55.73 Aligned_cols=75 Identities=13% Similarity=0.196 Sum_probs=54.5
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCC-----CHHHHh-hcCCEEEEeCCCchHHHHH
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKE-----TPFEVA-EASDVVITMLPSSSHVLDV 118 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~-----s~~e~~-~~aDiVi~~v~~~~~~~~v 118 (355)
-.+|+|+|+|.+|..-.+.....|.+|+.++|++++.+...+.|+...- +..+.+ +..|+|+.+++ +..+...
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~~~~~~~ 245 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-PATLEPS 245 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-hhhHHHH
Confidence 3689999999999888888877999999999999999888887654221 122222 22788888877 5566554
Q ss_pred hc
Q 018506 119 YN 120 (355)
Q Consensus 119 l~ 120 (355)
+.
T Consensus 246 l~ 247 (339)
T COG1064 246 LK 247 (339)
T ss_pred HH
Confidence 43
|
|
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.006 Score=55.60 Aligned_cols=76 Identities=14% Similarity=0.193 Sum_probs=58.7
Q ss_pred CCceEEEEccc-HHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 44 QFESVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~G-~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
.-.+|.|||-| .+|.+++..|.++|..|++++... .++.+.+++||+||.++..+.-+..
T Consensus 156 ~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t--------------~~l~~~~~~ADIvV~AvG~p~~i~~----- 216 (285)
T PRK14191 156 KGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT--------------KDLSFYTQNADIVCVGVGKPDLIKA----- 216 (285)
T ss_pred CCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc--------------HHHHHHHHhCCEEEEecCCCCcCCH-----
Confidence 34789999999 999999999999999999986432 2356788999999999987743322
Q ss_pred CccccCCCCCCCeEEEEcCCCC
Q 018506 123 NGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.+++ +|.++||.+...
T Consensus 217 -~~vk-----~GavVIDvGi~~ 232 (285)
T PRK14191 217 -SMVK-----KGAVVVDIGINR 232 (285)
T ss_pred -HHcC-----CCcEEEEeeccc
Confidence 2443 567999987654
|
|
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.003 Score=49.87 Aligned_cols=71 Identities=23% Similarity=0.479 Sum_probs=52.1
Q ss_pred ceEEEEc----ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcC
Q 018506 46 ESVGFIG----LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 121 (355)
Q Consensus 46 mkIgiIG----~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~ 121 (355)
++|+||| -+.+|.-+.++|.++|++|+.++...+.+ .|.....++.|.-...|++++++|. +.+.+++++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i-----~G~~~y~sl~e~p~~iDlavv~~~~-~~~~~~v~~ 74 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEI-----LGIKCYPSLAEIPEPIDLAVVCVPP-DKVPEIVDE 74 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEE-----TTEE-BSSGGGCSST-SEEEE-S-H-HHHHHHHHH
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEE-----CcEEeeccccCCCCCCCEEEEEcCH-HHHHHHHHH
Confidence 4699999 79999999999999999999998755322 4667778888844789999999985 466777665
Q ss_pred C
Q 018506 122 P 122 (355)
Q Consensus 122 ~ 122 (355)
.
T Consensus 75 ~ 75 (116)
T PF13380_consen 75 A 75 (116)
T ss_dssp H
T ss_pred H
Confidence 4
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0063 Score=49.80 Aligned_cols=38 Identities=29% Similarity=0.516 Sum_probs=31.6
Q ss_pred eEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHH
Q 018506 47 SVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMF 84 (355)
Q Consensus 47 kIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l 84 (355)
||.|||+|.+|+.++.+|+..|. +++++|.+.-....+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl 39 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNL 39 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchh
Confidence 68999999999999999999998 699998764433333
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.003 Score=59.12 Aligned_cols=64 Identities=11% Similarity=0.241 Sum_probs=47.1
Q ss_pred ceEEEEcc-cHHhHHHHHHHHHCCC-------cEEEEeCChhH--HH----HHHhC------CCCCCCCHHHHhhcCCEE
Q 018506 46 ESVGFIGL-GNMGFRMASNLMKAGY-------KMAVHDVNCNV--MK----MFSDM------GVPTKETPFEVAEASDVV 105 (355)
Q Consensus 46 mkIgiIG~-G~mG~~ia~~L~~~G~-------~V~v~dr~~~~--~~----~l~~~------g~~~~~s~~e~~~~aDiV 105 (355)
+||+|||+ |.+|..+|..|+..|. ++.++|++++. ++ .+.+. ...+..+..+.+++||+|
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDiv 82 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADWA 82 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCEE
Confidence 68999999 9999999999998775 79999985432 22 22211 122334566788999999
Q ss_pred EEeC
Q 018506 106 ITML 109 (355)
Q Consensus 106 i~~v 109 (355)
|++.
T Consensus 83 vita 86 (322)
T cd01338 83 LLVG 86 (322)
T ss_pred EEeC
Confidence 9995
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.066 Score=48.06 Aligned_cols=114 Identities=17% Similarity=0.144 Sum_probs=74.5
Q ss_pred CCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCC
Q 018506 88 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW 167 (355)
Q Consensus 88 g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~ 167 (355)
|++++++..|+++++|++|+-+|-......++..+-+.+ ++|.+|.+++|++|...-.+.+.+.+. ..|
T Consensus 126 GvkVtsDD~EAv~~aei~I~ftPfG~~q~~Iikkii~~l-----pEgAII~~tCTIpt~~ly~ilE~l~R~----Dvg-- 194 (340)
T TIGR01723 126 GLKVTTDDREAVEDADIIITWLPKGNKQPDIIKKFIDDI-----PEGAIVTHACTIPTTKFAKIFEDLGRE----DLN-- 194 (340)
T ss_pred CceEecCcHHHhcCCCEEEEEcCCCCCchHHHHHHHhhC-----CCCCEEeccccCChHHHHHHHHhhCcc----cCC--
Confidence 577888999999999999999998754455555433333 467899999999987655555554431 111
Q ss_pred CCceEEeCCCCCChHHHhcCceEEEec-CCHHHHHHHHHHHHHcCCCeEEeC
Q 018506 168 ENPVMLDAPVSGGVLAAEAGTLTFMVG-GSEDAYQAAKPLFLSMGKNTIYCG 218 (355)
Q Consensus 168 ~~~~~~~~pv~g~~~~~~~g~~~~~~g-g~~~~~~~v~~ll~~~g~~~~~~g 218 (355)
...|--+ ..+... ++..+.-| .++|..+++-++.+..++..+.+.
T Consensus 195 -VsS~HPa----aVPgt~-~q~Yi~egyAtEEqI~klveL~~sa~k~ay~~P 240 (340)
T TIGR01723 195 -VTSYHPG----CVPEMK-GQVYIAEGYASEEAVNKLYELGKKARGKAFKMP 240 (340)
T ss_pred -eeccCCC----CCCCCC-CceEeecccCCHHHHHHHHHHHHHhCCCeeecc
Confidence 0122222 222222 34333333 488999999999999998877543
|
This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201. |
| >PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0033 Score=57.28 Aligned_cols=96 Identities=20% Similarity=0.267 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHH---hcCCCcccccCCCCCCCcccCCCCCCCCCCCcchh
Q 018506 223 GAAAKICNNLTMAVSMLGVSEALTLGQS-LGISASTLTKILN---SSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASK 298 (355)
Q Consensus 223 a~~~Kl~~n~~~~~~~~~~~Ea~~la~~-~Gi~~~~~~~~~~---~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (355)
|+.+||++|.+.+..+++++|+..+.+. .|++.+++.+++. .+...||..+..... +. ..+..++.-++
T Consensus 1 GHyvKMVHNGIEYg~MQ~iaE~y~ll~~~~~~~~~ei~~vf~~Wn~g~l~S~Lieit~~i---l~----~~d~~g~~lld 73 (291)
T PF00393_consen 1 GHYVKMVHNGIEYGDMQLIAEGYDLLRRGLGLSNEEIADVFEEWNKGELRSYLIEITADI---LR----KKDETGGPLLD 73 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHTTTT-BHHHHHHHHH---HT-----B-TTSSBGGG
T ss_pred CCceeeeeccHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHCcCchhhHHHHHHHHH---Hh----hccCccCcchh
Confidence 5789999999999999999999999984 7888888766665 566667654322111 10 01111111111
Q ss_pred hH-----HHH-HHHHHHHHHHhCCCChHHHHHH
Q 018506 299 LM-----AKD-LNLALASAKEVGVDCPLTSQAQ 325 (355)
Q Consensus 299 ~~-----~kd-~~~~~~~a~~~gv~~pi~~~~~ 325 (355)
.. .|- =....+.|-++|+|+|++.+++
T Consensus 74 ~I~d~a~~kGtG~Wt~~~a~~~gvp~p~I~~a~ 106 (291)
T PF00393_consen 74 KILDKAGQKGTGKWTVQEALELGVPAPTIAAAV 106 (291)
T ss_dssp GB-S----BSHHHHHHHHHHHHT---HHHHHHH
T ss_pred hhCCccCCCCccchHHHHHHHhCCCccHHHHHH
Confidence 10 011 1467889999999999988766
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A .... |
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.012 Score=51.74 Aligned_cols=70 Identities=21% Similarity=0.306 Sum_probs=49.9
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCc-EEEEeCCh----------hHHHHHHhCC-CCCCC-----CHHHH-hhcCCE
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYK-MAVHDVNC----------NVMKMFSDMG-VPTKE-----TPFEV-AEASDV 104 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~-V~v~dr~~----------~~~~~l~~~g-~~~~~-----s~~e~-~~~aDi 104 (355)
...++|+|.|+|++|..+++.|.+.|.. |.+.|.+. +.++...+.+ +.... +.+++ ..+||+
T Consensus 21 l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~DV 100 (217)
T cd05211 21 LEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDVDI 100 (217)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceeccccE
Confidence 4568999999999999999999999885 66778887 6666554432 22111 11222 237999
Q ss_pred EEEeCCCc
Q 018506 105 VITMLPSS 112 (355)
Q Consensus 105 Vi~~v~~~ 112 (355)
+|-|.+.+
T Consensus 101 lipaA~~~ 108 (217)
T cd05211 101 FAPCALGN 108 (217)
T ss_pred EeeccccC
Confidence 99998765
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0082 Score=59.40 Aligned_cols=46 Identities=22% Similarity=0.216 Sum_probs=42.3
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP 90 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~ 90 (355)
-.||.|+|+|.+|..-+..+...|.+|+++|+++++.+...+.|+.
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~ 210 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAE 210 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCe
Confidence 4689999999999999999999999999999999999988888765
|
|
| >PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0015 Score=49.68 Aligned_cols=76 Identities=25% Similarity=0.332 Sum_probs=55.0
Q ss_pred CCceEEEEcccHHhHHHHHHHH-HCCCc-EEEEeCChhHHHHHHhCCCCCCCCHHHHhhc--CCEEEEeCCCchHHHHHh
Q 018506 44 QFESVGFIGLGNMGFRMASNLM-KAGYK-MAVHDVNCNVMKMFSDMGVPTKETPFEVAEA--SDVVITMLPSSSHVLDVY 119 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~-~~G~~-V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~--aDiVi~~v~~~~~~~~vl 119 (355)
+..+|.|+|+|+.|.+++..+. ..|+. +.++|.++++..... .|+.+..+.+++.+. .|+.++++|.. .++++.
T Consensus 2 k~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i-~gipV~~~~~~l~~~~~i~iaii~VP~~-~a~~~~ 79 (96)
T PF02629_consen 2 KKTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEI-GGIPVYGSMDELEEFIEIDIAIITVPAE-AAQEVA 79 (96)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEE-TTEEEESSHHHHHHHCTTSEEEEES-HH-HHHHHH
T ss_pred CCCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEE-CCEEeeccHHHhhhhhCCCEEEEEcCHH-HHHHHH
Confidence 3468999999999999985544 55776 567799988764322 356667688888776 99999999975 555555
Q ss_pred cC
Q 018506 120 NG 121 (355)
Q Consensus 120 ~~ 121 (355)
..
T Consensus 80 ~~ 81 (96)
T PF02629_consen 80 DE 81 (96)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D .... |
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0054 Score=56.29 Aligned_cols=68 Identities=26% Similarity=0.391 Sum_probs=51.0
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHhC-----CC--CCCCCH---HHHhhcCCEEEEeCCCc
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-----GV--PTKETP---FEVAEASDVVITMLPSS 112 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~~-----g~--~~~~s~---~e~~~~aDiVi~~v~~~ 112 (355)
..++.|+|+|..|++++..|++.|. +|+++||++++++.+.+. +. ....+. .+....+|+||-++|-.
T Consensus 127 ~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp~G 205 (283)
T PRK14027 127 LDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPMG 205 (283)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCCCC
Confidence 3679999999999999999999996 699999999999888652 11 011121 23456789999888743
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.009 Score=52.46 Aligned_cols=35 Identities=26% Similarity=0.497 Sum_probs=31.2
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCc-EEEEeCCh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYK-MAVHDVNC 78 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~-V~v~dr~~ 78 (355)
...+|.|||+|.+|+.++..|++.|.. ++++|.+.
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 62 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV 62 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 446899999999999999999999975 99999873
|
|
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0027 Score=59.38 Aligned_cols=64 Identities=20% Similarity=0.268 Sum_probs=46.7
Q ss_pred ceEEEEcc-cHHhHHHHHHHHHCCC-------cEEEEeCCh--hHHHHH----HhC------CCCCCCCHHHHhhcCCEE
Q 018506 46 ESVGFIGL-GNMGFRMASNLMKAGY-------KMAVHDVNC--NVMKMF----SDM------GVPTKETPFEVAEASDVV 105 (355)
Q Consensus 46 mkIgiIG~-G~mG~~ia~~L~~~G~-------~V~v~dr~~--~~~~~l----~~~------g~~~~~s~~e~~~~aDiV 105 (355)
.||+|||+ |.+|+.++..|...|. ++.++|+++ ++++-. .+. +.....+..+.+++||+|
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiV 80 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVA 80 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEE
Confidence 38999999 9999999999997652 599999987 543221 111 122335667888999999
Q ss_pred EEeC
Q 018506 106 ITML 109 (355)
Q Consensus 106 i~~v 109 (355)
|++-
T Consensus 81 VitA 84 (323)
T cd00704 81 ILVG 84 (323)
T ss_pred EEeC
Confidence 9985
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.022 Score=55.27 Aligned_cols=65 Identities=25% Similarity=0.223 Sum_probs=48.1
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhH----HHHHHhCCCCCCC--CHHHHhhcCCEEEEe
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNV----MKMFSDMGVPTKE--TPFEVAEASDVVITM 108 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~----~~~l~~~g~~~~~--s~~e~~~~aDiVi~~ 108 (355)
..|||.|+|+|.-|.+.++.|.+.|++|+++|.++.. ...+...++.... ...+....+|+||..
T Consensus 6 ~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~S 76 (448)
T COG0771 6 QGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKS 76 (448)
T ss_pred cCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEEC
Confidence 3689999999999999999999999999999966655 1222234433221 222566789999988
|
|
| >PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.089 Score=47.14 Aligned_cols=114 Identities=16% Similarity=0.132 Sum_probs=74.2
Q ss_pred CCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCC
Q 018506 88 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW 167 (355)
Q Consensus 88 g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~ 167 (355)
|+.++++..|+++++|++|+-+|-......++..+.+.+ +++.+|.+++|++|...-.+.+.+.+. ..|
T Consensus 128 GvkVtsDD~EAvk~aei~I~ftPfG~~t~~Iikki~~~i-----pEgAII~~tCTIpt~~ly~~le~l~R~----Dvg-- 196 (342)
T PRK00961 128 GLKVTTDDREAVADADIVITWLPKGGMQPDIIEKFADDI-----KEGAIVTHACTIPTTKFAKIFKDLGRD----DLN-- 196 (342)
T ss_pred CceEecCcHHHhcCCCEEEEecCCCCCchHHHHHHHhhC-----CCCCEEeccccCCHHHHHHHHHHhCcc----cCC--
Confidence 577788999999999999999998764455555433333 467899999999987655555544431 111
Q ss_pred CCceEEeCCCCCChHHHhcCceEEEec-CCHHHHHHHHHHHHHcCCCeEEeC
Q 018506 168 ENPVMLDAPVSGGVLAAEAGTLTFMVG-GSEDAYQAAKPLFLSMGKNTIYCG 218 (355)
Q Consensus 168 ~~~~~~~~pv~g~~~~~~~g~~~~~~g-g~~~~~~~v~~ll~~~g~~~~~~g 218 (355)
...|--+.+-|.+ |+..+--| .++|..+++-++.+..++..+.+.
T Consensus 197 -IsS~HPaaVPgt~-----Gq~~i~egyAtEEqI~klveL~~sa~k~ay~~P 242 (342)
T PRK00961 197 -VTSYHPGAVPEMK-----GQVYIAEGYADEEAVEKLYEIGKKARGNAFKMP 242 (342)
T ss_pred -eeccCCCCCCCCC-----CceecccccCCHHHHHHHHHHHHHhCCCeeecc
Confidence 0122222222322 33222112 488999999999999998877543
|
|
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0038 Score=60.52 Aligned_cols=66 Identities=15% Similarity=0.191 Sum_probs=50.7
Q ss_pred CceEEEEcc-cHHhHHHHHHHHHC-------CC--cEEEEeCChhHHHHH----HhC------CCCCCCCHHHHhhcCCE
Q 018506 45 FESVGFIGL-GNMGFRMASNLMKA-------GY--KMAVHDVNCNVMKMF----SDM------GVPTKETPFEVAEASDV 104 (355)
Q Consensus 45 ~mkIgiIG~-G~mG~~ia~~L~~~-------G~--~V~v~dr~~~~~~~l----~~~------g~~~~~s~~e~~~~aDi 104 (355)
.-||+|||+ |.+|..+|-.|+.. +. ++.++|++.++++-. .+. .+.+..+..+.+++||+
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaDi 179 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEW 179 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCCE
Confidence 368999999 99999999999987 65 788999998876432 221 22333566788899999
Q ss_pred EEEeCC
Q 018506 105 VITMLP 110 (355)
Q Consensus 105 Vi~~v~ 110 (355)
||++.-
T Consensus 180 VVitAG 185 (444)
T PLN00112 180 ALLIGA 185 (444)
T ss_pred EEECCC
Confidence 999963
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0087 Score=58.73 Aligned_cols=70 Identities=17% Similarity=0.248 Sum_probs=52.6
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC--CCCC----CCCHHH----HhhcCCEEEEeCCCc
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM--GVPT----KETPFE----VAEASDVVITMLPSS 112 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~--g~~~----~~s~~e----~~~~aDiVi~~v~~~ 112 (355)
..+++|-|+|+|.+|..+++.|.+.|++|+++|+++++.+.+.+. +... .++.+. -++++|.||++.+++
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~ 308 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDD 308 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCc
Confidence 346889999999999999999999999999999999999888764 2211 112221 134678887777654
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0091 Score=56.28 Aligned_cols=42 Identities=26% Similarity=0.328 Sum_probs=35.1
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFS 85 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~ 85 (355)
...||.|||+|.+|+.++..|+.+|. +++++|.+.-....+.
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~ 65 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQ 65 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcC
Confidence 45789999999999999999999998 7999998754444443
|
|
| >COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.017 Score=53.64 Aligned_cols=172 Identities=19% Similarity=0.257 Sum_probs=87.8
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHC--------CCcEE---EEeCChhHHHHHHhCC-CCCCCCH-----HHHh--hcCC
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKA--------GYKMA---VHDVNCNVMKMFSDMG-VPTKETP-----FEVA--EASD 103 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~--------G~~V~---v~dr~~~~~~~l~~~g-~~~~~s~-----~e~~--~~aD 103 (355)
++.++|+++|+|.+|+.+++.|.++ |.++. +.+|+..+...+.-.+ ....++. .+.+ .+.|
T Consensus 1 ~~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 80 (333)
T COG0460 1 MKTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLLNAEVWTTDGALSLGDEVLLDEDID 80 (333)
T ss_pred CceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcccccccchhhheecccccccHhhhccccCC
Confidence 3568999999999999999999976 33433 4466655543111111 1222333 3433 3567
Q ss_pred EEEEeCCC-chHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHH---HHHHHhhchhhhccCCCCCceEEeCCCCC
Q 018506 104 VVITMLPS-SSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRN---ISAAVSNCILKEKKDSWENPVMLDAPVSG 179 (355)
Q Consensus 104 iVi~~v~~-~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~---l~~~~~~~~~~~~~g~~~~~~~~~~pv~g 179 (355)
+|+-+++. ....+. +......++ .++.|| |.++...+.. +.+... ..| ...+.++.+.|
T Consensus 81 vvve~~~~d~~~~~~-~~~~~~al~-----~GkhVV--TaNK~~lA~~~~el~~~A~------~~g---~~l~yEAtV~g 143 (333)
T COG0460 81 VVVELVGGDVEPAEP-ADLYLKALE-----NGKHVV--TANKALLALHYHELREAAE------KNG---VKLLYEATVGG 143 (333)
T ss_pred EEEecCcccCCchhh-HHHHHHHHH-----cCCeEE--CCCchHhHhhHHHHHHHHH------HhC---CeEEEEeeecc
Confidence 88888765 222221 111112333 344554 2233222222 333222 122 13456666665
Q ss_pred ChHHHhcCceEEEecCCHHHHHHHHHHHHHcCCCeEEeCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 018506 180 GVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGG--AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGI 253 (355)
Q Consensus 180 ~~~~~~~g~~~~~~gg~~~~~~~v~~ll~~~g~~~~~~g~--~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi 253 (355)
+.+ .++.+++.+. |.++..+-. .|+..+. ...+.... ..+.|++..|++.|+
T Consensus 144 GiP----------------iI~~lr~~l~--g~~I~~i~GIlNGT~NyI--lt~m~~~~--~~f~dal~eAq~lGy 197 (333)
T COG0460 144 GIP----------------IIKLLRELLA--GDEILSIRGILNGTTNYI--LTRMEEGG--LSFEDALAEAQELGY 197 (333)
T ss_pred Ccc----------------hHHHHHhhcc--cCceEEEEEEEeccHHHH--HHHHHccC--CCHHHHHHHHHHcCC
Confidence 532 4566777776 666654433 3443333 11111111 146788888888887
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0044 Score=51.68 Aligned_cols=67 Identities=19% Similarity=0.241 Sum_probs=43.9
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCC-CCCC-CCH-HHHhhcCCEEEEeCCCc
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG-VPTK-ETP-FEVAEASDVVITMLPSS 112 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g-~~~~-~s~-~e~~~~aDiVi~~v~~~ 112 (355)
+..+|.|||.|.+|...++.|.+.|++|++++ ++..+++.+.+ +... ... ++-++++|+||.++.++
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs--p~~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT~d~ 81 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS--PEICKEMKELPYITWKQKTFSNDDIKDAHLIYAATNQH 81 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc--CccCHHHHhccCcEEEecccChhcCCCceEEEECCCCH
Confidence 45789999999999999999999999999996 44444444322 1110 000 11235667777666543
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0041 Score=58.07 Aligned_cols=65 Identities=15% Similarity=0.166 Sum_probs=46.8
Q ss_pred ceEEEEcc-cHHhHHHHHHHHHCCC--cEEEEeCChhHH--HHHHhC----CCC---CCCCHHHHhhcCCEEEEeCC
Q 018506 46 ESVGFIGL-GNMGFRMASNLMKAGY--KMAVHDVNCNVM--KMFSDM----GVP---TKETPFEVAEASDVVITMLP 110 (355)
Q Consensus 46 mkIgiIG~-G~mG~~ia~~L~~~G~--~V~v~dr~~~~~--~~l~~~----g~~---~~~s~~e~~~~aDiVi~~v~ 110 (355)
.||+|||+ |++|+.++..|+..+. ++.++|+++... ..+.+. .+. -.++..++++++|+||++.-
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG 95 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAG 95 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCC
Confidence 69999999 9999999999997665 799999976211 122221 111 23345788899999999863
|
|
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0091 Score=54.47 Aligned_cols=65 Identities=20% Similarity=0.289 Sum_probs=49.6
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHhC-CCCCCCCHHHHhhcCCEEEEeCCCc
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~~-g~~~~~s~~e~~~~aDiVi~~v~~~ 112 (355)
.++.|+|+|..+.+++..|.+.|. +|+++||++++.+.+.+. +....... ....+|+||-|+|-.
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~~~~--~~~~~dlvINaTp~G 189 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWRPDL--GGIEADILVNVTPIG 189 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcchhhc--ccccCCEEEECCccc
Confidence 479999999999999999999997 599999999999888763 22211111 124589999998743
|
|
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0062 Score=57.73 Aligned_cols=91 Identities=15% Similarity=0.216 Sum_probs=56.2
Q ss_pred CCceEEEEc-ccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHh----C-----------CCCC-CCCHHHHhhcCCEE
Q 018506 44 QFESVGFIG-LGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSD----M-----------GVPT-KETPFEVAEASDVV 105 (355)
Q Consensus 44 ~~mkIgiIG-~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~----~-----------g~~~-~~s~~e~~~~aDiV 105 (355)
+++||+|+| .|.+|..+.+.|.+..+ ++..+.++++...+... . ...+ ..+++ .+.++|+|
T Consensus 2 ~~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~DvV 80 (349)
T PRK08664 2 MKLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPE-AVDDVDIV 80 (349)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHH-HhcCCCEE
Confidence 468999997 89999999999997654 77777555544322111 0 0111 12333 34789999
Q ss_pred EEeCCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCC
Q 018506 106 ITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 106 i~~v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~ 144 (355)
|.|+|.. ....+... +.. .+..+||.|...
T Consensus 81 f~a~p~~-~s~~~~~~---~~~-----~G~~vIDls~~f 110 (349)
T PRK08664 81 FSALPSD-VAGEVEEE---FAK-----AGKPVFSNASAH 110 (349)
T ss_pred EEeCChh-HHHHHHHH---HHH-----CCCEEEECCchh
Confidence 9999976 33333322 211 345678887643
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0093 Score=58.56 Aligned_cols=66 Identities=26% Similarity=0.361 Sum_probs=48.9
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCCh-hHH----HHHHhCCCCC--CCCHHHHhhcCCEEEEeC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC-NVM----KMFSDMGVPT--KETPFEVAEASDVVITML 109 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~-~~~----~~l~~~g~~~--~~s~~e~~~~aDiVi~~v 109 (355)
+.++|.|+|.|.+|.++|..|++.|++|+++|++. +.+ +++.+.++.. .....+....+|+||.+.
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~ 76 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSP 76 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECC
Confidence 44789999999999999999999999999999975 333 3333345432 223334556899999885
|
|
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0072 Score=56.21 Aligned_cols=64 Identities=20% Similarity=0.289 Sum_probs=45.6
Q ss_pred eEEEEcc-cHHhHHHHHHHHHCCC--cEEEEeCChhH--HHHHHhC--CCCCC----C-CHHHHhhcCCEEEEeCC
Q 018506 47 SVGFIGL-GNMGFRMASNLMKAGY--KMAVHDVNCNV--MKMFSDM--GVPTK----E-TPFEVAEASDVVITMLP 110 (355)
Q Consensus 47 kIgiIG~-G~mG~~ia~~L~~~G~--~V~v~dr~~~~--~~~l~~~--g~~~~----~-s~~e~~~~aDiVi~~v~ 110 (355)
||+|||+ |.+|..+|..|...++ ++.++|+++.. +..+.+. ..... + ++.+.++++|+||++.-
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG 76 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAG 76 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCC
Confidence 7999999 9999999999998875 79999987621 1112221 01111 1 24678899999999963
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.013 Score=53.35 Aligned_cols=76 Identities=16% Similarity=0.227 Sum_probs=59.1
Q ss_pred CCceEEEEccc-HHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 44 QFESVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~G-~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
.-.+|.|||-+ .+|.+++..|.++|..|++++.. +.++.+.+++||+||+++..+.-+..
T Consensus 156 ~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~--------------T~~l~~~~~~ADIvV~AvGkp~~i~~----- 216 (281)
T PRK14183 156 KGKDVCVVGASNIVGKPMAALLLNANATVDICHIF--------------TKDLKAHTKKADIVIVGVGKPNLITE----- 216 (281)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------CcCHHHHHhhCCEEEEecCcccccCH-----
Confidence 34689999998 89999999999999999988642 23567888999999999987743322
Q ss_pred CccccCCCCCCCeEEEEcCCCC
Q 018506 123 NGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.+++ +|.++||.+...
T Consensus 217 -~~vk-----~gavvIDvGin~ 232 (281)
T PRK14183 217 -DMVK-----EGAIVIDIGINR 232 (281)
T ss_pred -HHcC-----CCcEEEEeeccc
Confidence 2443 567999987654
|
|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.032 Score=54.71 Aligned_cols=65 Identities=22% Similarity=0.304 Sum_probs=47.9
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhH----HHHHHhCCCCCC--CCHHHHhhc-CCEEEEeC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNV----MKMFSDMGVPTK--ETPFEVAEA-SDVVITML 109 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~----~~~l~~~g~~~~--~s~~e~~~~-aDiVi~~v 109 (355)
.++|.|+|.|.+|.++|+.|++.|++|+++|+++.. .+.+.+.|+... ....+.... .|+||...
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~ 76 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNP 76 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECC
Confidence 367999999999999999999999999999986532 344555565432 234444444 89888864
|
|
| >COG2344 AT-rich DNA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0038 Score=52.59 Aligned_cols=76 Identities=21% Similarity=0.280 Sum_probs=52.4
Q ss_pred CCCceEEEEcccHHhHHHHHH-HH-HCCCc-EEEEeCChhHHHHHHhC-CCCCCCCHHHHhh--cCCEEEEeCCCchHHH
Q 018506 43 CQFESVGFIGLGNMGFRMASN-LM-KAGYK-MAVHDVNCNVMKMFSDM-GVPTKETPFEVAE--ASDVVITMLPSSSHVL 116 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~-L~-~~G~~-V~v~dr~~~~~~~l~~~-g~~~~~s~~e~~~--~aDiVi~~v~~~~~~~ 116 (355)
.++-++.+||+|++|.+++.. +. ++|.+ +.++|.+++++-..... .+.-.+++++-++ +.|+.|+|||.. ..+
T Consensus 82 ~~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa~-~AQ 160 (211)
T COG2344 82 DKTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPAE-HAQ 160 (211)
T ss_pred CcceeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCCeeeechHHHHHHHHhcCccEEEEEccHH-HHH
Confidence 456789999999999999986 33 56777 56889999876544332 1222345555555 789999999975 444
Q ss_pred HHh
Q 018506 117 DVY 119 (355)
Q Consensus 117 ~vl 119 (355)
.+.
T Consensus 161 ~va 163 (211)
T COG2344 161 EVA 163 (211)
T ss_pred HHH
Confidence 443
|
|
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.031 Score=49.96 Aligned_cols=104 Identities=19% Similarity=0.289 Sum_probs=65.2
Q ss_pred CCceEEEEcc-cHHhHHHHHHHHHCC-Cc-EEEEeCChhHH-----HHH---HhCCCCCCCCHHHHhhcCCEEEEeCCCc
Q 018506 44 QFESVGFIGL-GNMGFRMASNLMKAG-YK-MAVHDVNCNVM-----KMF---SDMGVPTKETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 44 ~~mkIgiIG~-G~mG~~ia~~L~~~G-~~-V~v~dr~~~~~-----~~l---~~~g~~~~~s~~e~~~~aDiVi~~v~~~ 112 (355)
++|||+|.|+ |.||..+.+.+.+.. ++ +-.++|.++.. .++ ...++.+.+++.....++|++|=... |
T Consensus 1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~~~DV~IDFT~-P 79 (266)
T COG0289 1 SMIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKADADVLIDFTT-P 79 (266)
T ss_pred CCceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCceeecchhhcccCCCEEEECCC-c
Confidence 3689999999 999999999999875 45 44667765432 122 22456667777777889999986543 3
Q ss_pred hHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHH
Q 018506 113 SHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAV 155 (355)
Q Consensus 113 ~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~ 155 (355)
+.+...+.- .++. +-.+||-++.-+++..+.+.+..
T Consensus 80 ~~~~~~l~~---~~~~----~~~lVIGTTGf~~e~~~~l~~~a 115 (266)
T COG0289 80 EATLENLEF---ALEH----GKPLVIGTTGFTEEQLEKLREAA 115 (266)
T ss_pred hhhHHHHHH---HHHc----CCCeEEECCCCCHHHHHHHHHHH
Confidence 445454432 1221 11355555555566655565554
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.0063 Score=57.05 Aligned_cols=64 Identities=19% Similarity=0.241 Sum_probs=46.1
Q ss_pred ceEEEEcc-cHHhHHHHHHHHHCC-------CcEEEEeCChh--HHHH----HHh------CCCCCCCCHHHHhhcCCEE
Q 018506 46 ESVGFIGL-GNMGFRMASNLMKAG-------YKMAVHDVNCN--VMKM----FSD------MGVPTKETPFEVAEASDVV 105 (355)
Q Consensus 46 mkIgiIG~-G~mG~~ia~~L~~~G-------~~V~v~dr~~~--~~~~----l~~------~g~~~~~s~~e~~~~aDiV 105 (355)
.||+|+|+ |.+|+.++..|...+ .+|.++|+++. +++. +.+ ..+....+..++++++|+|
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiV 82 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVA 82 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEE
Confidence 68999999 999999999999854 58999999653 2221 111 0122245666888999999
Q ss_pred EEeC
Q 018506 106 ITML 109 (355)
Q Consensus 106 i~~v 109 (355)
|++.
T Consensus 83 I~tA 86 (325)
T cd01336 83 ILVG 86 (325)
T ss_pred EEeC
Confidence 9985
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.0062 Score=49.35 Aligned_cols=37 Identities=30% Similarity=0.390 Sum_probs=30.7
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHH
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVM 81 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~ 81 (355)
..||.|+|+|.+|+.++..|+..|. +++++|.+.=..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~ 39 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEP 39 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-G
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceee
Confidence 3689999999999999999999998 699998764433
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.014 Score=52.97 Aligned_cols=76 Identities=13% Similarity=0.190 Sum_probs=59.5
Q ss_pred CCceEEEEccc-HHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 44 QFESVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~G-~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
.-.++.|||-+ ..|.+++..|...|..|++++++. .++.+.+++||+||.+++.+.-+..
T Consensus 151 ~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t--------------~~L~~~~~~ADIvI~Avgk~~lv~~----- 211 (279)
T PRK14178 151 AGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT--------------ENLKAELRQADILVSAAGKAGFITP----- 211 (279)
T ss_pred CCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh--------------hHHHHHHhhCCEEEECCCcccccCH-----
Confidence 44789999999 999999999999999999998653 3577888999999999986533222
Q ss_pred CccccCCCCCCCeEEEEcCCCC
Q 018506 123 NGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.+++ +|.+|||.+...
T Consensus 212 -~~vk-----~GavVIDVgi~~ 227 (279)
T PRK14178 212 -DMVK-----PGATVIDVGINQ 227 (279)
T ss_pred -HHcC-----CCcEEEEeeccc
Confidence 2343 567999987653
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.015 Score=52.33 Aligned_cols=41 Identities=20% Similarity=0.300 Sum_probs=36.1
Q ss_pred CCceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHH
Q 018506 44 QFESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMF 84 (355)
Q Consensus 44 ~~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l 84 (355)
++|+|.|+| .|.+|+.++..|++.||+|++..|++++....
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~ 57 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTS 57 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHh
Confidence 468999999 59999999999999999999999998876544
|
|
| >PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.0044 Score=52.80 Aligned_cols=65 Identities=20% Similarity=0.345 Sum_probs=44.4
Q ss_pred eEEEEcccHHhHHHHHH-HH-HC----CCcEEEEeCChhHHHHHHh--------CC----CCCCCCHHHHhhcCCEEEEe
Q 018506 47 SVGFIGLGNMGFRMASN-LM-KA----GYKMAVHDVNCNVMKMFSD--------MG----VPTKETPFEVAEASDVVITM 108 (355)
Q Consensus 47 kIgiIG~G~mG~~ia~~-L~-~~----G~~V~v~dr~~~~~~~l~~--------~g----~~~~~s~~e~~~~aDiVi~~ 108 (355)
||+|||+|..-.+.-.. +. .. +-++.++|+++++++.... .+ +..++|.+++++++|+||.+
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gADfVi~~ 80 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTDRREALEGADFVINQ 80 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTTESEEEE-
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCCCCEEEEE
Confidence 79999999987774332 33 22 2379999999998764322 23 34478999999999999999
Q ss_pred CCC
Q 018506 109 LPS 111 (355)
Q Consensus 109 v~~ 111 (355)
+--
T Consensus 81 irv 83 (183)
T PF02056_consen 81 IRV 83 (183)
T ss_dssp --T
T ss_pred eee
Confidence 743
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A. |
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.019 Score=57.42 Aligned_cols=40 Identities=18% Similarity=0.302 Sum_probs=34.2
Q ss_pred ceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH
Q 018506 46 ESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 85 (355)
Q Consensus 46 mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~ 85 (355)
.+|.|.|+ |.+|..+++.|++.|++|.+++|+.++.+.+.
T Consensus 81 KvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~ 121 (576)
T PLN03209 81 DLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLV 121 (576)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 45777765 99999999999999999999999998876654
|
|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.013 Score=53.99 Aligned_cols=68 Identities=10% Similarity=0.118 Sum_probs=48.7
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCCh---hHHHHHHhC-C----CC-CCCCH------HHHhhcCCEEEEe
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNC---NVMKMFSDM-G----VP-TKETP------FEVAEASDVVITM 108 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~---~~~~~l~~~-g----~~-~~~s~------~e~~~~aDiVi~~ 108 (355)
..++.|||+|..+++++..|+..|. +|+++||++ ++++.+.+. + .. ...+. .+...++|+||-+
T Consensus 124 ~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aDivINa 203 (288)
T PRK12749 124 GKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILTNG 203 (288)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhcccCCEEEEC
Confidence 3579999999999999999999886 799999995 477776542 1 10 11122 2244578999988
Q ss_pred CCCc
Q 018506 109 LPSS 112 (355)
Q Consensus 109 v~~~ 112 (355)
+|-.
T Consensus 204 Tp~G 207 (288)
T PRK12749 204 TKVG 207 (288)
T ss_pred CCCC
Confidence 8753
|
|
| >PRK00676 hemA glutamyl-tRNA reductase; Validated | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.013 Score=54.79 Aligned_cols=61 Identities=16% Similarity=0.255 Sum_probs=43.7
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEe
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITM 108 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~ 108 (355)
....+|.|||+|.||...+++|.++|. +|++.||+.+. ..+.+.. ....+....+|+||.|
T Consensus 172 l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~-~~~~~~~----~~~~~~~~~~DvVIs~ 233 (338)
T PRK00676 172 SKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLT-LPYRTVV----REELSFQDPYDVIFFG 233 (338)
T ss_pred ccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccc-cchhhhh----hhhhhcccCCCEEEEc
Confidence 456899999999999999999999995 59999999753 1111100 0111333588999986
|
|
| >TIGR01082 murC UDP-N-acetylmuramate--alanine ligase | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.03 Score=55.02 Aligned_cols=62 Identities=27% Similarity=0.558 Sum_probs=46.7
Q ss_pred eEEEEcccHHhHH-HHHHHHHCCCcEEEEeCChh-HHHHHHhCCCCCCC-CHHHHhhcCCEEEEe
Q 018506 47 SVGFIGLGNMGFR-MASNLMKAGYKMAVHDVNCN-VMKMFSDMGVPTKE-TPFEVAEASDVVITM 108 (355)
Q Consensus 47 kIgiIG~G~mG~~-ia~~L~~~G~~V~v~dr~~~-~~~~l~~~g~~~~~-s~~e~~~~aDiVi~~ 108 (355)
+|-|||.|..|.+ +|+.|.+.|++|+++|.+.. ..+.+.+.|+.... ...+.++++|+||.+
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~s 65 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIYIGHSAENLDDADVVVVS 65 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCEEeCCCCHHHCCCCCEEEEC
Confidence 4889999999998 99999999999999997543 33456666665432 223445679999887
|
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081. |
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.0075 Score=57.92 Aligned_cols=39 Identities=21% Similarity=0.126 Sum_probs=35.2
Q ss_pred CCCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 41 PSCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 41 ~~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
..|+.++|.|||.|..|..+|..|+++|++|+++++.+.
T Consensus 2 ~~~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 2 THMSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 346678999999999999999999999999999998764
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.013 Score=55.30 Aligned_cols=64 Identities=11% Similarity=0.237 Sum_probs=45.4
Q ss_pred CceEEEEcc-cHHhHHHHHHHHHC-CCcEEEEeCChhHHHHHHh-CCC-----CCCC---CHHHHhhcCCEEEEe
Q 018506 45 FESVGFIGL-GNMGFRMASNLMKA-GYKMAVHDVNCNVMKMFSD-MGV-----PTKE---TPFEVAEASDVVITM 108 (355)
Q Consensus 45 ~mkIgiIG~-G~mG~~ia~~L~~~-G~~V~v~dr~~~~~~~l~~-~g~-----~~~~---s~~e~~~~aDiVi~~ 108 (355)
||||.|.|+ |.+|+.++..|.++ ||+|.+++|+++....+.. .++ .... ...++++++|+||=+
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~d~ViH~ 75 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDLVNHPRMHFFEGDITINKEWIEYHVKKCDVILPL 75 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHhccCCCeEEEeCCCCCCHHHHHHHHcCCCEEEEC
Confidence 579999996 99999999999986 6999999998765544432 121 1111 223456789998844
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.02 Score=50.82 Aligned_cols=36 Identities=28% Similarity=0.352 Sum_probs=31.2
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCN 79 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~ 79 (355)
...||.|||+|.+|+.++..|+..|. +++++|.+.-
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~v 56 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVV 56 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence 44789999999999999999999997 6888886543
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.01 Score=56.72 Aligned_cols=65 Identities=17% Similarity=0.199 Sum_probs=47.2
Q ss_pred ceEEEEcc-cHHhHHHHHHHHHCCC-----cE--EEE--eCChhHHHHHH----h------CCCCCCCCHHHHhhcCCEE
Q 018506 46 ESVGFIGL-GNMGFRMASNLMKAGY-----KM--AVH--DVNCNVMKMFS----D------MGVPTKETPFEVAEASDVV 105 (355)
Q Consensus 46 mkIgiIG~-G~mG~~ia~~L~~~G~-----~V--~v~--dr~~~~~~~l~----~------~g~~~~~s~~e~~~~aDiV 105 (355)
-||+|||+ |++|..+|-.|...|. +| .++ |++.++++... + ..+.+..+..+.++++|+|
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kdaDIV 124 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFEDADWA 124 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCCCCEE
Confidence 78999999 9999999999998764 23 344 88887764322 1 1233345666888999999
Q ss_pred EEeCC
Q 018506 106 ITMLP 110 (355)
Q Consensus 106 i~~v~ 110 (355)
|++.-
T Consensus 125 VitAG 129 (387)
T TIGR01757 125 LLIGA 129 (387)
T ss_pred EECCC
Confidence 99853
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.042 Score=44.81 Aligned_cols=77 Identities=18% Similarity=0.179 Sum_probs=58.5
Q ss_pred CCCceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcC
Q 018506 43 CQFESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 121 (355)
Q Consensus 43 ~~~mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~ 121 (355)
..-++|.|+|- ...|.+++..|.+.|.+|++++++. .++++.+++||+|+.++..+..++
T Consensus 26 ~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t--------------~~l~~~v~~ADIVvsAtg~~~~i~----- 86 (140)
T cd05212 26 LDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT--------------IQLQSKVHDADVVVVGSPKPEKVP----- 86 (140)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC--------------cCHHHHHhhCCEEEEecCCCCccC-----
Confidence 35578999965 5689999999999999999998642 267788899999999998763322
Q ss_pred CCccccCCCCCCCeEEEEcCCCC
Q 018506 122 PNGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 122 ~~~~l~~~~~~~~~ivi~~st~~ 144 (355)
..+++ +|.+++|.+...
T Consensus 87 -~~~ik-----pGa~Vidvg~~~ 103 (140)
T cd05212 87 -TEWIK-----PGATVINCSPTK 103 (140)
T ss_pred -HHHcC-----CCCEEEEcCCCc
Confidence 22554 567888887765
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.012 Score=54.61 Aligned_cols=81 Identities=20% Similarity=0.181 Sum_probs=52.1
Q ss_pred CceEEEEc-ccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 45 FESVGFIG-LGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 45 ~mkIgiIG-~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
++||+||| .|..|.-+.+.|.++.+ ++.....+..+ .. .+.++..+++|++|+|+|...+ .+....
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~-------~~---~~~~~~~~~~DvvFlalp~~~s-~~~~~~- 69 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK-------DA---AARRELLNAADVAILCLPDDAA-REAVAL- 69 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC-------cc---cCchhhhcCCCEEEECCCHHHH-HHHHHH-
Confidence 57999998 89999999999998753 33322222111 01 2334555789999999997633 333322
Q ss_pred CccccCCCCCCCeEEEEcCCCC
Q 018506 123 NGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~ 144 (355)
+.+ .+..|||.|+..
T Consensus 70 --~~~-----~g~~VIDlSadf 84 (313)
T PRK11863 70 --IDN-----PATRVIDASTAH 84 (313)
T ss_pred --HHh-----CCCEEEECChhh
Confidence 221 456899998754
|
|
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.0074 Score=55.90 Aligned_cols=61 Identities=20% Similarity=0.298 Sum_probs=45.6
Q ss_pred EEcccHHhHHHHHHHHHCCC--cEEEEeCChhHHHHH----HhC------CCCCCCCHHHHhhcCCEEEEeCC
Q 018506 50 FIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMKMF----SDM------GVPTKETPFEVAEASDVVITMLP 110 (355)
Q Consensus 50 iIG~G~mG~~ia~~L~~~G~--~V~v~dr~~~~~~~l----~~~------g~~~~~s~~e~~~~aDiVi~~v~ 110 (355)
|||+|.+|..+|..|+..+. ++.++|++.++++.. ... ......+..+.+++||+||++.-
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag 73 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAG 73 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCC
Confidence 69999999999999998875 699999987765432 221 12333455678899999999863
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.016 Score=55.69 Aligned_cols=69 Identities=17% Similarity=0.225 Sum_probs=49.0
Q ss_pred CCCCCceEEEEc-ccHHhHHHHHHHHHC-CCcEEEEeCChhHHHHHHhCC-------CC-----C--CCCHHHHhhcCCE
Q 018506 41 PSCQFESVGFIG-LGNMGFRMASNLMKA-GYKMAVHDVNCNVMKMFSDMG-------VP-----T--KETPFEVAEASDV 104 (355)
Q Consensus 41 ~~~~~mkIgiIG-~G~mG~~ia~~L~~~-G~~V~v~dr~~~~~~~l~~~g-------~~-----~--~~s~~e~~~~aDi 104 (355)
++.+.|||.|.| +|.+|+.+++.|.++ |++|.+++|++++...+...+ +. . ..+..++++++|+
T Consensus 10 ~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~ 89 (386)
T PLN02427 10 KPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADL 89 (386)
T ss_pred CcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCE
Confidence 445668999997 599999999999998 599999999877665543221 11 1 1223455667888
Q ss_pred EEEeC
Q 018506 105 VITML 109 (355)
Q Consensus 105 Vi~~v 109 (355)
||=+.
T Consensus 90 ViHlA 94 (386)
T PLN02427 90 TINLA 94 (386)
T ss_pred EEEcc
Confidence 88654
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.012 Score=45.42 Aligned_cols=65 Identities=20% Similarity=0.171 Sum_probs=44.7
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCC-CCCHHHHhhcCCEEEEeCCCc
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT-KETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~-~~s~~e~~~~aDiVi~~v~~~ 112 (355)
+..+|.|||.|.+|..=++.|.+.|-+|+++..+.+..+ ..+.. ....++.++++++||.+..++
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~----~~i~~~~~~~~~~l~~~~lV~~at~d~ 71 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSE----GLIQLIRREFEEDLDGADLVFAATDDP 71 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHH----TSCEEEESS-GGGCTTESEEEE-SS-H
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhh----hHHHHHhhhHHHHHhhheEEEecCCCH
Confidence 457899999999999999999999999999998752222 11111 112234567888888888765
|
|
| >KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.018 Score=60.61 Aligned_cols=77 Identities=18% Similarity=0.245 Sum_probs=59.1
Q ss_pred cccc-CCCCCCCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh---------------------HHHHHHhCCCC
Q 018506 33 RRFF-SSQVPSCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN---------------------VMKMFSDMGVP 90 (355)
Q Consensus 33 ~~~~-~~~~~~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~---------------------~~~~l~~~g~~ 90 (355)
..|. ++|+....-.+|+|||.|.-|.+-|..|.+.||.|++|.|+.. +++-+.+.|+.
T Consensus 1772 egwm~p~pp~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~ 1851 (2142)
T KOG0399|consen 1772 EGWMKPCPPAFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIR 1851 (2142)
T ss_pred hcCCccCCcccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCce
Confidence 4565 4566666778999999999999999999999999999998632 22333444543
Q ss_pred C--------CCCHHHHhhcCCEEEEeC
Q 018506 91 T--------KETPFEVAEASDVVITML 109 (355)
Q Consensus 91 ~--------~~s~~e~~~~aDiVi~~v 109 (355)
+ .-+++++-+.-|.|++|+
T Consensus 1852 f~tn~eigk~vs~d~l~~~~daiv~a~ 1878 (2142)
T KOG0399|consen 1852 FVTNTEIGKHVSLDELKKENDAIVLAT 1878 (2142)
T ss_pred EEeeccccccccHHHHhhccCeEEEEe
Confidence 3 246788888999999996
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.031 Score=48.50 Aligned_cols=35 Identities=26% Similarity=0.441 Sum_probs=31.0
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCCh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNC 78 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~ 78 (355)
+..||.|||+|.+|+.++++|+..|. +++++|.+.
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 45789999999999999999999997 599998764
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.033 Score=48.61 Aligned_cols=68 Identities=21% Similarity=0.279 Sum_probs=48.5
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh-HHHHHHhCC-CCC---CCCHHHHhhcCCEEEEeCCCc
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN-VMKMFSDMG-VPT---KETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~-~~~~l~~~g-~~~---~~s~~e~~~~aDiVi~~v~~~ 112 (355)
+..+|.|||.|.+|..-++.|.+.|.+|++++.+.. .+..+.+.+ +.. .-. .+.+..+++||.++.++
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~-~~dl~~~~lVi~at~d~ 80 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFD-ADILEGAFLVIAATDDE 80 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCC-HHHhCCcEEEEECCCCH
Confidence 346899999999999999999999999999987654 344454432 211 112 23456788888887664
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.017 Score=57.63 Aligned_cols=64 Identities=19% Similarity=0.171 Sum_probs=47.0
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh--HHHHHHhC--CCCCC--CCHHHHhhcCCEEEEe
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN--VMKMFSDM--GVPTK--ETPFEVAEASDVVITM 108 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~--~~~~l~~~--g~~~~--~s~~e~~~~aDiVi~~ 108 (355)
..+|.|+|+|..|.++|+.|.+.|++|+++|.... ..+.+.+. |+... ....+.++++|+||+.
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~s 76 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALS 76 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEEC
Confidence 45799999999999999999999999999996542 23445444 33321 1234556689999987
|
|
| >COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.011 Score=55.10 Aligned_cols=63 Identities=25% Similarity=0.361 Sum_probs=47.1
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHH-HHHHhCCCCCC-C---CHHHHhhcCCEEEE
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVM-KMFSDMGVPTK-E---TPFEVAEASDVVIT 107 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~-~~l~~~g~~~~-~---s~~e~~~~aDiVi~ 107 (355)
+++|||||.|-.|..|+..-.+-|++|.+.|.+++.- ..+.+.-+... + .+.++++.||+|=.
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~ 68 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITY 68 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEE
Confidence 4789999999999999999999999999999877653 33333322222 2 35677889998743
|
|
| >cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4 | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.013 Score=56.82 Aligned_cols=65 Identities=17% Similarity=0.241 Sum_probs=48.6
Q ss_pred ceEEEEcccHH-hHHHHHHHHHC-----CCcEEEEeCChhHHHHHHh--------CC----CCCCCCHHHHhhcCCEEEE
Q 018506 46 ESVGFIGLGNM-GFRMASNLMKA-----GYKMAVHDVNCNVMKMFSD--------MG----VPTKETPFEVAEASDVVIT 107 (355)
Q Consensus 46 mkIgiIG~G~m-G~~ia~~L~~~-----G~~V~v~dr~~~~~~~l~~--------~g----~~~~~s~~e~~~~aDiVi~ 107 (355)
|||+|||.|.. ...+...|.+. +.+|+++|.++++++.+.. .| +..+++.++++++||+||.
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~~Al~gADfVi~ 80 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFEKTMDLEDAIIDADFVIN 80 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEEEE
Confidence 79999999984 33455666644 3579999999988765322 23 4567899999999999999
Q ss_pred eCC
Q 018506 108 MLP 110 (355)
Q Consensus 108 ~v~ 110 (355)
..-
T Consensus 81 ~ir 83 (425)
T cd05197 81 QFR 83 (425)
T ss_pred eee
Confidence 963
|
Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in |
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.02 Score=56.75 Aligned_cols=66 Identities=26% Similarity=0.350 Sum_probs=47.6
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh-----HHHHHHhCCCCCCC-CHHHHhhcCCEEEEeC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN-----VMKMFSDMGVPTKE-TPFEVAEASDVVITML 109 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~-----~~~~l~~~g~~~~~-s~~e~~~~aDiVi~~v 109 (355)
...+|.|||.|..|..+|..|.+.|++|+++|+++. ..+.+.+.|+.... +..+....+|+||++.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~ 86 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSP 86 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECC
Confidence 346899999999999999999999999999996542 22345556654421 1111334699999885
|
|
| >TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.023 Score=53.17 Aligned_cols=66 Identities=24% Similarity=0.390 Sum_probs=48.2
Q ss_pred EEEEcccHHhHHHHHHHHHC-CCcEE-EEeCChhHHHHHHh-C------------------CCCCCCCHHHHhhcCCEEE
Q 018506 48 VGFIGLGNMGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSD-M------------------GVPTKETPFEVAEASDVVI 106 (355)
Q Consensus 48 IgiIG~G~mG~~ia~~L~~~-G~~V~-v~dr~~~~~~~l~~-~------------------g~~~~~s~~e~~~~aDiVi 106 (355)
|||+|+|.+|...++.+.+. +.+|. +.|.+++....+.. . ++.+..+++++...+|+|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv 80 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV 80 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence 69999999999999998754 45654 55777775444433 1 2333457888888999999
Q ss_pred EeCCCch
Q 018506 107 TMLPSSS 113 (355)
Q Consensus 107 ~~v~~~~ 113 (355)
.|.|...
T Consensus 81 e~Tp~~~ 87 (333)
T TIGR01546 81 DATPGGI 87 (333)
T ss_pred ECCCCCC
Confidence 9988654
|
All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's. |
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.027 Score=58.14 Aligned_cols=35 Identities=29% Similarity=0.371 Sum_probs=32.3
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCCh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 78 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~ 78 (355)
..++|+|||.|..|...|..|.+.||+|+++++.+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~ 360 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHP 360 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 45789999999999999999999999999999864
|
|
| >PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.037 Score=50.48 Aligned_cols=76 Identities=14% Similarity=0.179 Sum_probs=58.6
Q ss_pred CCceEEEEccc-HHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 44 QFESVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~G-~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
.-.++.|||-+ .+|.+++..|.++|..|++++.. +.++.+.+++||+||.++..+.-+..
T Consensus 156 ~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~--------------T~~l~~~~~~ADIvI~AvG~~~~i~~----- 216 (284)
T PRK14170 156 EGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSR--------------TKDLPQVAKEADILVVATGLAKFVKK----- 216 (284)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEecCCcCccCH-----
Confidence 44789999865 57999999999999999998642 24578888999999999987743332
Q ss_pred CccccCCCCCCCeEEEEcCCCC
Q 018506 123 NGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.+++ +|.++||.+...
T Consensus 217 -~~vk-----~GavVIDvGin~ 232 (284)
T PRK14170 217 -DYIK-----PGAIVIDVGMDR 232 (284)
T ss_pred -HHcC-----CCCEEEEccCcc
Confidence 2443 567999998764
|
|
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.016 Score=54.29 Aligned_cols=63 Identities=19% Similarity=0.287 Sum_probs=44.5
Q ss_pred eEEEEcc-cHHhHHHHHHHHHCCC-------cEEEEeCChhH--HHH----HHh------CCCCCCCCHHHHhhcCCEEE
Q 018506 47 SVGFIGL-GNMGFRMASNLMKAGY-------KMAVHDVNCNV--MKM----FSD------MGVPTKETPFEVAEASDVVI 106 (355)
Q Consensus 47 kIgiIG~-G~mG~~ia~~L~~~G~-------~V~v~dr~~~~--~~~----l~~------~g~~~~~s~~e~~~~aDiVi 106 (355)
||+|||+ |.+|+.++..|...+. ++.++|++++. ++. +.+ .+....++..+.++++|+||
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV 80 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI 80 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence 6999999 9999999999997553 59999986542 211 111 11222335567888999999
Q ss_pred EeC
Q 018506 107 TML 109 (355)
Q Consensus 107 ~~v 109 (355)
++.
T Consensus 81 itA 83 (324)
T TIGR01758 81 LVG 83 (324)
T ss_pred EcC
Confidence 985
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.04 Score=56.69 Aligned_cols=68 Identities=26% Similarity=0.357 Sum_probs=50.1
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh---------------------HHHHHHhCCCCC--------CCC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN---------------------VMKMFSDMGVPT--------KET 94 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~---------------------~~~~l~~~g~~~--------~~s 94 (355)
...||+|||.|..|...|..|++.||+|++|++.+. ..+.+.+.|+.. ..+
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~ 388 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDIT 388 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCcCC
Confidence 458899999999999999999999999999998753 234444455321 113
Q ss_pred HHHHhhcCCEEEEeCCC
Q 018506 95 PFEVAEASDVVITMLPS 111 (355)
Q Consensus 95 ~~e~~~~aDiVi~~v~~ 111 (355)
..++....|.||+++-.
T Consensus 389 ~~~l~~~~DaV~latGa 405 (639)
T PRK12809 389 FSDLTSEYDAVFIGVGT 405 (639)
T ss_pred HHHHHhcCCEEEEeCCC
Confidence 44555678888888754
|
|
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.028 Score=52.05 Aligned_cols=65 Identities=15% Similarity=0.147 Sum_probs=50.7
Q ss_pred CCceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHH---HHhC------------CCCCCCCHHHHhhcCCEEEE
Q 018506 44 QFESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKM---FSDM------------GVPTKETPFEVAEASDVVIT 107 (355)
Q Consensus 44 ~~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~---l~~~------------g~~~~~s~~e~~~~aDiVi~ 107 (355)
..++|.|-| .|.+|+.+...|+++||.|.+.-|+++.-+. +.+. .+....+..++++.||.||=
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgVfH 84 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGVFH 84 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCCEEEE
Confidence 568899995 6999999999999999999999999886322 3331 12334577889999999995
Q ss_pred e
Q 018506 108 M 108 (355)
Q Consensus 108 ~ 108 (355)
+
T Consensus 85 ~ 85 (327)
T KOG1502|consen 85 T 85 (327)
T ss_pred e
Confidence 5
|
|
| >PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.052 Score=53.27 Aligned_cols=63 Identities=19% Similarity=0.220 Sum_probs=46.6
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh--HHHHHHh--CCCCCCC--CHHHHhhcCCEEEEe
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN--VMKMFSD--MGVPTKE--TPFEVAEASDVVITM 108 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~--~~~~l~~--~g~~~~~--s~~e~~~~aDiVi~~ 108 (355)
-.|.|||+|..|.++|+.|.+.|++|+++|..+. ..+.+.+ .|+.... ...+.+.++|+||.+
T Consensus 7 ~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~s 75 (448)
T PRK03803 7 GLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIIS 75 (448)
T ss_pred CeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEEC
Confidence 4699999999999999999999999999997543 2234554 2554421 223455689998887
|
|
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.026 Score=50.23 Aligned_cols=43 Identities=21% Similarity=0.351 Sum_probs=35.2
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~ 86 (355)
...||.|||+|..|+.++..|+..|. +++++|.+.-....+..
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~R 69 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNR 69 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhcc
Confidence 34689999999999999999999996 58999877655555543
|
|
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.028 Score=56.35 Aligned_cols=68 Identities=15% Similarity=0.142 Sum_probs=48.5
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC-CCCC--CCCHHHH-hhcCCEEEEeCCC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPT--KETPFEV-AEASDVVITMLPS 111 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~-g~~~--~~s~~e~-~~~aDiVi~~v~~ 111 (355)
...++-|+|+|.+|.+++..|++.|.+|++++|+.++++.+.+. +... ..+..+. ...+|+|+-++|-
T Consensus 378 ~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~~~~~~~~~~~~~~~~~diiINtT~v 449 (529)
T PLN02520 378 AGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGGQALTLADLENFHPEEGMILANTTSV 449 (529)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceeeHhHhhhhccccCeEEEecccC
Confidence 34679999999999999999999999999999999998888652 2111 1111111 1346777766653
|
|
| >COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.035 Score=50.18 Aligned_cols=77 Identities=16% Similarity=0.234 Sum_probs=59.7
Q ss_pred CCceEEEEcccH-HhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 44 QFESVGFIGLGN-MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~G~-mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
.-.++.|||-++ +|.+|+..|..+++.|++++.. +.++.+.++++|++|.++-.+.-++
T Consensus 155 ~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~--------------T~~l~~~~k~ADIvv~AvG~p~~i~------ 214 (283)
T COG0190 155 RGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSR--------------TKDLASITKNADIVVVAVGKPHFIK------ 214 (283)
T ss_pred CCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCC--------------CCCHHHHhhhCCEEEEecCCccccc------
Confidence 447899999886 6999999999999999999863 2467788899999999998764433
Q ss_pred CccccCCCCCCCeEEEEcCCCCH
Q 018506 123 NGLLQGGNSVRPQLLIDSSTIDP 145 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~~ 145 (355)
..+++ ++.++||......
T Consensus 215 ~d~vk-----~gavVIDVGinrv 232 (283)
T COG0190 215 ADMVK-----PGAVVIDVGINRV 232 (283)
T ss_pred ccccc-----CCCEEEecCCccc
Confidence 22443 4579999877643
|
|
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.049 Score=46.68 Aligned_cols=89 Identities=24% Similarity=0.270 Sum_probs=61.6
Q ss_pred CCCceEEEEccc-HHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC---CCCCC--CC----HHHHhhcCCEEEEeCCCc
Q 018506 43 CQFESVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM---GVPTK--ET----PFEVAEASDVVITMLPSS 112 (355)
Q Consensus 43 ~~~mkIgiIG~G-~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~---g~~~~--~s----~~e~~~~aDiVi~~v~~~ 112 (355)
..-.+|.|||-+ .+|.+++..|.+.|..|+++|.+.-.. +... +-..+ .+ +.+.+++|||||.+++.+
T Consensus 60 l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~--~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG~~ 137 (197)
T cd01079 60 LYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQV--FTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVPSP 137 (197)
T ss_pred CCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccc--cccccccccccccccchhhHHHHHhhhCCEEEEccCCC
Confidence 455789999866 579999999999999999998643222 1100 00111 12 678889999999999987
Q ss_pred hH-HHHHhcCCCccccCCCCCCCeEEEEcCCCC
Q 018506 113 SH-VLDVYNGPNGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 113 ~~-~~~vl~~~~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.. +.. .+++ +|.++||.+...
T Consensus 138 ~~~i~~------d~ik-----~GavVIDVGi~~ 159 (197)
T cd01079 138 NYKVPT------ELLK-----DGAICINFASIK 159 (197)
T ss_pred CCccCH------HHcC-----CCcEEEEcCCCc
Confidence 43 222 2443 567999998764
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.011 Score=57.13 Aligned_cols=33 Identities=30% Similarity=0.503 Sum_probs=31.3
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCCh
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 78 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~ 78 (355)
.+|.|||.|.+|.++|..|++.|++|+++++.+
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 589999999999999999999999999999875
|
|
| >PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.019 Score=45.22 Aligned_cols=83 Identities=20% Similarity=0.216 Sum_probs=49.7
Q ss_pred cccHHhHHHHHHHHHC----CCcE-EEEeCC--hhHHHHHHhCCCCCCCCHHHHhh--cCCEEEEeCCCchHHHHHhcCC
Q 018506 52 GLGNMGFRMASNLMKA----GYKM-AVHDVN--CNVMKMFSDMGVPTKETPFEVAE--ASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 52 G~G~mG~~ia~~L~~~----G~~V-~v~dr~--~~~~~~l~~~g~~~~~s~~e~~~--~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
|+|.||+.++..|.+. +.+| .+++|+ .+........+.....+++++++ ..|+||-|.+. +.+.+.+..
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~-~~~~~~~~~- 78 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSS-EAVAEYYEK- 78 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSC-HHHHHHHHH-
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCc-hHHHHHHHH-
Confidence 8999999999999987 4554 567887 11111111234567788888887 89999999654 466655433
Q ss_pred CccccCCCCCCCeEEEEcCCC
Q 018506 123 NGLLQGGNSVRPQLLIDSSTI 143 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~ 143 (355)
+++ .|.-||..+..
T Consensus 79 --~L~-----~G~~VVt~nk~ 92 (117)
T PF03447_consen 79 --ALE-----RGKHVVTANKG 92 (117)
T ss_dssp --HHH-----TTCEEEES-HH
T ss_pred --HHH-----CCCeEEEECHH
Confidence 444 34456555443
|
Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D .... |
| >PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+) | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.041 Score=50.54 Aligned_cols=76 Identities=17% Similarity=0.219 Sum_probs=58.8
Q ss_pred CCceEEEEccc-HHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 44 QFESVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~G-~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
.-.+|.|||-+ .+|.+++..|.++|..|++++.. +.++.+.+++||+||.++..+.-+..
T Consensus 166 ~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~--------------T~nl~~~~~~ADIvv~AvGk~~~i~~----- 226 (299)
T PLN02516 166 KGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR--------------TPDPESIVREADIVIAAAGQAMMIKG----- 226 (299)
T ss_pred CCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEcCCCcCccCH-----
Confidence 45789999866 57999999999999999999753 34678889999999999987633222
Q ss_pred CccccCCCCCCCeEEEEcCCCC
Q 018506 123 NGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.+++ +|.+|||.+...
T Consensus 227 -~~vk-----~gavVIDvGin~ 242 (299)
T PLN02516 227 -DWIK-----PGAAVIDVGTNA 242 (299)
T ss_pred -HHcC-----CCCEEEEeeccc
Confidence 2443 567999998764
|
|
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.015 Score=54.70 Aligned_cols=90 Identities=13% Similarity=0.145 Sum_probs=54.8
Q ss_pred CceEEEEcc-cHHhHHHHHHHHH-CCCc---EEEEe--CChhHHHHHHhCCCCCC-CCHHHHhhcCCEEEEeCCCchHHH
Q 018506 45 FESVGFIGL-GNMGFRMASNLMK-AGYK---MAVHD--VNCNVMKMFSDMGVPTK-ETPFEVAEASDVVITMLPSSSHVL 116 (355)
Q Consensus 45 ~mkIgiIG~-G~mG~~ia~~L~~-~G~~---V~v~d--r~~~~~~~l~~~g~~~~-~s~~e~~~~aDiVi~~v~~~~~~~ 116 (355)
.+||||||+ |..|..|.+.|.+ ..++ +..+. ++..+.-.+......+. .+..+ ..+.|++|+|+|.. ..+
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~~-~~~~Divf~a~~~~-~s~ 82 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINS-FEGVDIAFFSAGGE-VSR 82 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHHH-hcCCCEEEECCChH-HHH
Confidence 479999987 9999999999995 6667 44443 22222212221112211 13333 47899999999875 444
Q ss_pred HHhcCCCccccCCCCCCCeEEEEcCCCC
Q 018506 117 DVYNGPNGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 117 ~vl~~~~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.+... ..+ .|..|||.|+..
T Consensus 83 ~~~~~---~~~-----~G~~VID~Ss~f 102 (347)
T PRK06728 83 QFVNQ---AVS-----SGAIVIDNTSEY 102 (347)
T ss_pred HHHHH---HHH-----CCCEEEECchhh
Confidence 44332 111 456899998754
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.014 Score=54.40 Aligned_cols=64 Identities=13% Similarity=0.114 Sum_probs=45.9
Q ss_pred ceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCC-----C--CCCHHHHhhcCCEEEEeC
Q 018506 46 ESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-----T--KETPFEVAEASDVVITML 109 (355)
Q Consensus 46 mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~-----~--~~s~~e~~~~aDiVi~~v 109 (355)
|+|.|.| .|.+|..++..|.+.|++|++.+|+++....+...++. . ..++.++++.+|+||-+.
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a 72 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVA 72 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEec
Confidence 5799997 59999999999999999999999987765433322221 1 123445566778877665
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.017 Score=54.47 Aligned_cols=92 Identities=14% Similarity=0.144 Sum_probs=55.5
Q ss_pred CCceEEEEc-ccHHhHHHHHHHHHCCCc---EEEE--eCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHH
Q 018506 44 QFESVGFIG-LGNMGFRMASNLMKAGYK---MAVH--DVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLD 117 (355)
Q Consensus 44 ~~mkIgiIG-~G~mG~~ia~~L~~~G~~---V~v~--dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~ 117 (355)
..+||+||| .|..|..+.+.|.+.+|+ +... .|+..+.-........+.....+.++++|+||+|+|.. ....
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~-~s~~ 84 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGS-ISKK 84 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcH-HHHH
Confidence 458999995 699999999999998884 3222 33433322111111112111224457899999999976 3344
Q ss_pred HhcCCCccccCCCCCCCeEEEEcCCCC
Q 018506 118 VYNGPNGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 118 vl~~~~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.... ... .|..|||.|+..
T Consensus 85 ~~~~---~~~-----~g~~VIDlS~~f 103 (344)
T PLN02383 85 FGPI---AVD-----KGAVVVDNSSAF 103 (344)
T ss_pred HHHH---HHh-----CCCEEEECCchh
Confidence 3332 111 456899998754
|
|
| >COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.11 Score=48.14 Aligned_cols=186 Identities=18% Similarity=0.282 Sum_probs=99.5
Q ss_pred CCceEEEEcccHHhHHHHHHHHH-CCCcEE-EEeCChhHHHHHHh-CCCC--------CCCCHHHHhhcCCEEEEeCCCc
Q 018506 44 QFESVGFIGLGNMGFRMASNLMK-AGYKMA-VHDVNCNVMKMFSD-MGVP--------TKETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~-~G~~V~-v~dr~~~~~~~l~~-~g~~--------~~~s~~e~~~~aDiVi~~v~~~ 112 (355)
+.-|||+||+|.||+.|+...+. .|.+|. +.||+.+.+.+..+ .+.. -.+...++++.-.+.+. +
T Consensus 16 ~PiRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT---~- 91 (438)
T COG4091 16 KPIRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVT---D- 91 (438)
T ss_pred CceEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEe---c-
Confidence 44789999999999999998885 578865 55899888776654 2221 12445566655555442 1
Q ss_pred hHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEe--CCCCCChHHH----hc
Q 018506 113 SHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD--APVSGGVLAA----EA 186 (355)
Q Consensus 113 ~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~--~pv~g~~~~~----~~ 186 (355)
+.+.++.. +.+ .+|||.+..+.--.+.-.+.+.. .. ...+++ +-++-++.-. ..
T Consensus 92 -D~~~i~~~--~~I--------dvIIdATG~p~vGA~~~l~Ai~h-----~K----HlVMmNVEaDvtIGp~Lk~~Ad~~ 151 (438)
T COG4091 92 -DAELIIAN--DLI--------DVIIDATGVPEVGAKIALEAILH-----GK----HLVMMNVEADVTIGPILKQQADAA 151 (438)
T ss_pred -chhhhhcC--Ccc--------eEEEEcCCCcchhhHhHHHHHhc-----CC----eEEEEEeeeceeecHHHHHHHhhc
Confidence 12222211 111 26777766543322222222211 00 133333 3333333322 22
Q ss_pred CceEEEecCC-HHHHHHHHHHHHHcCCCeEEeCC-------------c------chHHHHHHHHHHHHHHHHHHHHHHHH
Q 018506 187 GTLTFMVGGS-EDAYQAAKPLFLSMGKNTIYCGG-------------A------GNGAAAKICNNLTMAVSMLGVSEALT 246 (355)
Q Consensus 187 g~~~~~~gg~-~~~~~~v~~ll~~~g~~~~~~g~-------------~------g~a~~~Kl~~n~~~~~~~~~~~Ea~~ 246 (355)
|-..-+..|| +...-.+-++.+++|..++..|. . ...+..||...+.=..- .+.|+..
T Consensus 152 GviyS~~~GDeP~~~mEL~efa~a~G~evv~aGKGkNnpl~~~a~Pdt~~eeA~r~~~n~~Ml~sF~DGsK--tmvEMaa 229 (438)
T COG4091 152 GVIYSGGAGDEPSSCMELYEFASALGFEVVSAGKGKNNPLNIDANPDTYEEEAKRRNMNPRMLVSFQDGSK--TMVEMAA 229 (438)
T ss_pred CeEEeccCCCCcHHHHHHHHHHHhcCCeEEeccCCcCCCCccCCCCchHHHHHhhcCCChHHhhhhhcccH--HHHHHHH
Confidence 3322233344 55677788889999977764441 0 11122334433332232 3679999
Q ss_pred HHHHcCCCH
Q 018506 247 LGQSLGISA 255 (355)
Q Consensus 247 la~~~Gi~~ 255 (355)
++.+.|+.+
T Consensus 230 vANaTGl~p 238 (438)
T COG4091 230 VANATGLVP 238 (438)
T ss_pred HhcccCCCC
Confidence 999988743
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.029 Score=50.40 Aligned_cols=41 Identities=22% Similarity=0.376 Sum_probs=33.2
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMF 84 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l 84 (355)
...||.|||+|.+|+.++..|+..|. +++++|.+.-....+
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL 72 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNL 72 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchh
Confidence 44789999999999999999999996 688888764433333
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.026 Score=50.55 Aligned_cols=42 Identities=21% Similarity=0.384 Sum_probs=34.0
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFS 85 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~ 85 (355)
...||.|+|+|.+|+.++..|+..|. +++++|.+.-....+.
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~ 65 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQ 65 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcc
Confidence 34689999999999999999999996 5888887655444443
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.02 Score=41.70 Aligned_cols=34 Identities=24% Similarity=0.360 Sum_probs=31.3
Q ss_pred eEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhH
Q 018506 47 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNV 80 (355)
Q Consensus 47 kIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~ 80 (355)
||.|||.|..|.-+|..|.+.|.+|+++++++.-
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRL 34 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence 6899999999999999999999999999987653
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.018 Score=55.08 Aligned_cols=67 Identities=16% Similarity=0.130 Sum_probs=44.5
Q ss_pred CCCceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCC-----CCC--CCHHHHhhcCCEEEEeC
Q 018506 43 CQFESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGV-----PTK--ETPFEVAEASDVVITML 109 (355)
Q Consensus 43 ~~~mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~-----~~~--~s~~e~~~~aDiVi~~v 109 (355)
...|||.|.|. |.+|+.+++.|.+.||+|++.+|............. ... .+...++.++|+||-+.
T Consensus 19 ~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~A 93 (370)
T PLN02695 19 SEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSEDMFCHEFHLVDLRVMENCLKVTKGVDHVFNLA 93 (370)
T ss_pred CCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccccccccceEEECCCCCHHHHHHHHhCCCEEEEcc
Confidence 35689999986 999999999999999999999985432110000011 111 12233456789888775
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.018 Score=52.74 Aligned_cols=65 Identities=17% Similarity=0.073 Sum_probs=45.0
Q ss_pred eEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCC----CCCCCCHHHHh------hc-CCEEEEeCCC
Q 018506 47 SVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG----VPTKETPFEVA------EA-SDVVITMLPS 111 (355)
Q Consensus 47 kIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g----~~~~~s~~e~~------~~-aDiVi~~v~~ 111 (355)
+|.|+|+ |.+|+.+++.|.+.||+|.+..|++++.....-.. ..-.+++.+++ +. +|.|+++.+.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~ 77 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPP 77 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCC
Confidence 4788976 99999999999999999999999987643211011 11122344444 34 8989888764
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.022 Score=55.46 Aligned_cols=64 Identities=13% Similarity=0.135 Sum_probs=47.7
Q ss_pred ceEEEEcccHHhH-HHHHHHHHC-----CCcEEEEeCChhHHHHHHh--------CC----CCCCCCHHHHhhcCCEEEE
Q 018506 46 ESVGFIGLGNMGF-RMASNLMKA-----GYKMAVHDVNCNVMKMFSD--------MG----VPTKETPFEVAEASDVVIT 107 (355)
Q Consensus 46 mkIgiIG~G~mG~-~ia~~L~~~-----G~~V~v~dr~~~~~~~l~~--------~g----~~~~~s~~e~~~~aDiVi~ 107 (355)
|||+|||+|..=+ .+...|... +-+|+++|.++++++.+.. .| +..+++..+++++||+||.
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~gADfVi~ 80 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENYPEIKFVYTTDPEEAFTDADFVFA 80 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhhCCCeEEEEECCHHHHhCCCCEEEE
Confidence 7999999998622 344555543 3579999999988765322 22 4567899999999999999
Q ss_pred eC
Q 018506 108 ML 109 (355)
Q Consensus 108 ~v 109 (355)
+.
T Consensus 81 ~i 82 (437)
T cd05298 81 QI 82 (437)
T ss_pred Ee
Confidence 86
|
Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas |
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.017 Score=54.36 Aligned_cols=91 Identities=15% Similarity=0.084 Sum_probs=56.1
Q ss_pred CceEEEEc-ccHHhHHHHHHHHHCCCcE---EEEeCChhHHHHHHhCC--CCCCCCHHHHhhcCCEEEEeCCCchHHHHH
Q 018506 45 FESVGFIG-LGNMGFRMASNLMKAGYKM---AVHDVNCNVMKMFSDMG--VPTKETPFEVAEASDVVITMLPSSSHVLDV 118 (355)
Q Consensus 45 ~mkIgiIG-~G~mG~~ia~~L~~~G~~V---~v~dr~~~~~~~l~~~g--~~~~~s~~e~~~~aDiVi~~v~~~~~~~~v 118 (355)
+|||+|+| .|..|..+.+.|.+.+|++ ....+..+.-+.+.-.+ ....+...+.++++|+||+|+|.. ..+++
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g-~s~~~ 79 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGS-VSKKY 79 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChH-HHHHH
Confidence 47999995 6999999999999988864 55544433322222111 122111123346899999999876 33443
Q ss_pred hcCCCccccCCCCCCCeEEEEcCCCC
Q 018506 119 YNGPNGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 119 l~~~~~~l~~~~~~~~~ivi~~st~~ 144 (355)
... +++ .|..|||.|+..
T Consensus 80 ~~~---~~~-----~G~~VIDlS~~~ 97 (334)
T PRK14874 80 APK---AAA-----AGAVVIDNSSAF 97 (334)
T ss_pred HHH---HHh-----CCCEEEECCchh
Confidence 332 222 345899988753
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.035 Score=53.25 Aligned_cols=35 Identities=29% Similarity=0.342 Sum_probs=31.2
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCCh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNC 78 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~ 78 (355)
...||.|||+|.+|+.++..|+..|. +++++|++.
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~ 169 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDV 169 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 34689999999999999999999997 699999874
|
|
| >TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.061 Score=52.51 Aligned_cols=62 Identities=24% Similarity=0.343 Sum_probs=45.2
Q ss_pred eEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhH-HH----HHH-hCCCCCC--CCHHHHhhcCCEEEEeC
Q 018506 47 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNV-MK----MFS-DMGVPTK--ETPFEVAEASDVVITML 109 (355)
Q Consensus 47 kIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~-~~----~l~-~~g~~~~--~s~~e~~~~aDiVi~~v 109 (355)
||.|||+|..|.++|+.|.+.|++|+++|..+.. .. .+. ..|+... .+ .+.+.++|+||..-
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~-~~~~~~~d~vv~sp 70 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLH-LEDLNNADLVVKSP 70 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCc-hHHhccCCEEEECC
Confidence 5899999999999999999999999999975442 11 122 2455432 23 44567899998873
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.048 Score=48.36 Aligned_cols=42 Identities=17% Similarity=0.280 Sum_probs=35.2
Q ss_pred CCceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH
Q 018506 44 QFESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 85 (355)
Q Consensus 44 ~~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~ 85 (355)
+++++-|.| .|.+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 47 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALA 47 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 445677886 599999999999999999999999987765543
|
|
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.038 Score=51.34 Aligned_cols=94 Identities=24% Similarity=0.245 Sum_probs=55.9
Q ss_pred CCceEEEEc-ccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHh-----CCC---CC-CCCHHHH-hhcCCEEEEeCCC
Q 018506 44 QFESVGFIG-LGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSD-----MGV---PT-KETPFEV-AEASDVVITMLPS 111 (355)
Q Consensus 44 ~~mkIgiIG-~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~-----~g~---~~-~~s~~e~-~~~aDiVi~~v~~ 111 (355)
.|+||+||| .|.-|.-|.+.|+.+.+ ++..+..+..+=+.+.+ .|. .. ..+++++ .++||+||+|+|.
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFlalPh 80 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFLALPH 80 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEEecCc
Confidence 368999995 69999999999997643 55555433211122222 111 11 1233333 3459999999998
Q ss_pred chHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHH
Q 018506 112 SSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ 146 (355)
Q Consensus 112 ~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~ 146 (355)
..+.+-+ .. ++. ++..|||+|+-.--
T Consensus 81 g~s~~~v-~~---l~~-----~g~~VIDLSadfR~ 106 (349)
T COG0002 81 GVSAELV-PE---LLE-----AGCKVIDLSADFRL 106 (349)
T ss_pred hhHHHHH-HH---HHh-----CCCeEEECCccccc
Confidence 7544433 22 332 23469999997633
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.074 Score=49.03 Aligned_cols=42 Identities=12% Similarity=0.196 Sum_probs=35.4
Q ss_pred CceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 45 FESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 45 ~mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
.++|-|.|. |.+|..+++.|++.|++|++.+|+.++.+.+.+
T Consensus 40 ~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~ 82 (293)
T PRK05866 40 GKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVAD 82 (293)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 356777765 999999999999999999999999887766543
|
|
| >cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.025 Score=54.84 Aligned_cols=64 Identities=19% Similarity=0.278 Sum_probs=47.4
Q ss_pred ceEEEEcccHHhH-HHHHHHHHC-----CCcEEEEeCC-hhHHHHHHh--------CC----CCCCCCHHHHhhcCCEEE
Q 018506 46 ESVGFIGLGNMGF-RMASNLMKA-----GYKMAVHDVN-CNVMKMFSD--------MG----VPTKETPFEVAEASDVVI 106 (355)
Q Consensus 46 mkIgiIG~G~mG~-~ia~~L~~~-----G~~V~v~dr~-~~~~~~l~~--------~g----~~~~~s~~e~~~~aDiVi 106 (355)
|||+|||+|..-+ .+...|+.. +-+|+++|++ +++++.... .+ +..+++.+++++++|+||
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~al~gadfVi 80 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAGLPIKVHLTTDRREALEGADFVF 80 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEEE
Confidence 7999999999755 345555542 2579999999 788654221 22 345789999999999999
Q ss_pred EeC
Q 018506 107 TML 109 (355)
Q Consensus 107 ~~v 109 (355)
++.
T Consensus 81 ~~~ 83 (419)
T cd05296 81 TQI 83 (419)
T ss_pred EEE
Confidence 996
|
Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein |
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.012 Score=55.53 Aligned_cols=88 Identities=16% Similarity=0.208 Sum_probs=53.9
Q ss_pred eEEEEc-ccHHhHHHHHHHHHCCCcE---EEEeCChhHHHHHHhCCC--CCCCCHHHHhhcCCEEEEeCCCchHHHHHhc
Q 018506 47 SVGFIG-LGNMGFRMASNLMKAGYKM---AVHDVNCNVMKMFSDMGV--PTKETPFEVAEASDVVITMLPSSSHVLDVYN 120 (355)
Q Consensus 47 kIgiIG-~G~mG~~ia~~L~~~G~~V---~v~dr~~~~~~~l~~~g~--~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~ 120 (355)
||+||| .|..|..+.+.|.+++|++ .++.+..+.-+.+...+. ...+-..+.++++|+||+|+|.. .......
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~D~v~~a~g~~-~s~~~a~ 79 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKIESFEGIDIALFSAGGS-VSKEFAP 79 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCChHHhcCCCEEEECCCHH-HHHHHHH
Confidence 689998 8999999999999988873 344444332222222221 11111123457899999999976 3334332
Q ss_pred CCCccccCCCCCCCeEEEEcCCC
Q 018506 121 GPNGLLQGGNSVRPQLLIDSSTI 143 (355)
Q Consensus 121 ~~~~~l~~~~~~~~~ivi~~st~ 143 (355)
. +++ .|..|||.|+.
T Consensus 80 ~---~~~-----~G~~VID~ss~ 94 (339)
T TIGR01296 80 K---AAK-----CGAIVIDNTSA 94 (339)
T ss_pred H---HHH-----CCCEEEECCHH
Confidence 2 222 34578888864
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.018 Score=51.76 Aligned_cols=59 Identities=19% Similarity=0.160 Sum_probs=46.1
Q ss_pred cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhh-cCCEEEEeCC
Q 018506 52 GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAE-ASDVVITMLP 110 (355)
Q Consensus 52 G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~-~aDiVi~~v~ 110 (355)
|.|.+|+++...|.+.||+|++..|++.+.+......+...+..++... .+|+||--.-
T Consensus 6 gTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~~~~~~v~~~~~~~~~~~~~~DavINLAG 65 (297)
T COG1090 6 GTGLIGRALTARLRKGGHQVTILTRRPPKASQNLHPNVTLWEGLADALTLGIDAVINLAG 65 (297)
T ss_pred cccchhHHHHHHHHhCCCeEEEEEcCCcchhhhcCccccccchhhhcccCCCCEEEECCC
Confidence 8899999999999999999999999998877655444444445555555 6998886543
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.013 Score=53.40 Aligned_cols=65 Identities=23% Similarity=0.312 Sum_probs=53.3
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC-CCC------CCCCHHHHhhcCCEEEEeC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVP------TKETPFEVAEASDVVITML 109 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~-g~~------~~~s~~e~~~~aDiVi~~v 109 (355)
.-||.|||.|.+|+.=|+...--|-+|++.|+|.+++..+-+. +.+ -....++.+..+|+||-+|
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaV 239 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAV 239 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEE
Confidence 3689999999999999999999999999999999998887662 222 1234567788999999875
|
|
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.015 Score=54.63 Aligned_cols=91 Identities=13% Similarity=0.114 Sum_probs=54.4
Q ss_pred CCceEEEEcc-cHHhHHHHHHHHHCCCc---EEEEeC--ChhHHHHHHhCCCCCCCCHHHH-hhcCCEEEEeCCCchHHH
Q 018506 44 QFESVGFIGL-GNMGFRMASNLMKAGYK---MAVHDV--NCNVMKMFSDMGVPTKETPFEV-AEASDVVITMLPSSSHVL 116 (355)
Q Consensus 44 ~~mkIgiIG~-G~mG~~ia~~L~~~G~~---V~v~dr--~~~~~~~l~~~g~~~~~s~~e~-~~~aDiVi~~v~~~~~~~ 116 (355)
..+||+|||+ |..|.-+.+.|.+..|+ +..+.. +..+.-.+......+. ++++. ..++|++|+|+|.. ...
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~-~~~~~~~~~~Dvvf~a~p~~-~s~ 80 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQ-DAAEFDWSQAQLAFFVAGRE-ASA 80 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEE-eCchhhccCCCEEEECCCHH-HHH
Confidence 5689999987 99999999999996553 444432 2222111211112222 33333 26899999999875 333
Q ss_pred HHhcCCCccccCCCCCCCeEEEEcCCCC
Q 018506 117 DVYNGPNGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 117 ~vl~~~~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.+... ..+ .|..|||.|+..
T Consensus 81 ~~~~~---~~~-----~g~~VIDlS~~f 100 (336)
T PRK08040 81 AYAEE---ATN-----AGCLVIDSSGLF 100 (336)
T ss_pred HHHHH---HHH-----CCCEEEECChHh
Confidence 43332 221 456899998644
|
|
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.041 Score=56.67 Aligned_cols=69 Identities=23% Similarity=0.315 Sum_probs=50.1
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhH---------------------HHHHHhCCCCCC--------C
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNV---------------------MKMFSDMGVPTK--------E 93 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~---------------------~~~l~~~g~~~~--------~ 93 (355)
...++|.|||.|..|...|..|++.||+|+++++++.. .+.+.+.|+... -
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~~dv 270 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGRDI 270 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcccCcc
Confidence 34578999999999999999999999999999976431 334444454321 1
Q ss_pred CHHHHhhcCCEEEEeCCC
Q 018506 94 TPFEVAEASDVVITMLPS 111 (355)
Q Consensus 94 s~~e~~~~aDiVi~~v~~ 111 (355)
+.++.....|.||+++-.
T Consensus 271 ~~~~~~~~~DaVilAtGa 288 (652)
T PRK12814 271 TLEELQKEFDAVLLAVGA 288 (652)
T ss_pred CHHHHHhhcCEEEEEcCC
Confidence 344444569999998744
|
|
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.016 Score=55.24 Aligned_cols=34 Identities=26% Similarity=0.368 Sum_probs=32.2
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
|+|.|||.|..|.++|..|+++|++|++++++++
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 6899999999999999999999999999998865
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.04 Score=50.40 Aligned_cols=42 Identities=24% Similarity=0.384 Sum_probs=33.7
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFS 85 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~ 85 (355)
...+|.|||+|.+|+.++..|+.+|. +++++|.+.-....++
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLn 68 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFN 68 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccc
Confidence 34689999999999999999999996 5888887654444443
|
|
| >TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.072 Score=52.29 Aligned_cols=71 Identities=25% Similarity=0.483 Sum_probs=56.4
Q ss_pred ceEEEEcc----cHHhHHHHHHHHHCCC--cEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHh
Q 018506 46 ESVGFIGL----GNMGFRMASNLMKAGY--KMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVY 119 (355)
Q Consensus 46 mkIgiIG~----G~mG~~ia~~L~~~G~--~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl 119 (355)
.+|+|||+ |++|..+.++|.+.|| +|+.+|...+. -.|.....++.|+-...|++++++|.. .+.+++
T Consensus 8 ~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~-----i~G~~~~~sl~~lp~~~Dlavi~vp~~-~~~~~l 81 (447)
T TIGR02717 8 KSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGE-----ILGVKAYPSVLEIPDPVDLAVIVVPAK-YVPQVV 81 (447)
T ss_pred CEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCc-----cCCccccCCHHHCCCCCCEEEEecCHH-HHHHHH
Confidence 67999999 8999999999999998 56666654332 146788889999888899999999964 666666
Q ss_pred cCC
Q 018506 120 NGP 122 (355)
Q Consensus 120 ~~~ 122 (355)
++.
T Consensus 82 ~e~ 84 (447)
T TIGR02717 82 EEC 84 (447)
T ss_pred HHH
Confidence 553
|
Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff. |
| >PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.16 Score=52.52 Aligned_cols=117 Identities=10% Similarity=0.166 Sum_probs=81.9
Q ss_pred EEEeCCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHH
Q 018506 105 VITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAA 184 (355)
Q Consensus 105 Vi~~v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~ 184 (355)
||+|+|- ..+.+++.++.+.++ ++.+|.|.++++....+.+.+.++. ... ..+-.+|+.|....-
T Consensus 1 vila~Pv-~~~~~~~~~~~~~~~-----~~~~vtDv~SvK~~i~~~~~~~l~~-----~~~----~fvg~HPMaG~e~~G 65 (673)
T PRK11861 1 VLLAAPV-AQTGPLLARIAPFLD-----ASTIVTDAGSTKSDVVAAARAALGA-----RIG----QFVPGHPIAGRESSG 65 (673)
T ss_pred CEEEcCH-HHHHHHHHHHhhhCC-----CCcEEEecCcccHHHHHHHHHhccc-----cCC----eEEecCCcCcCcchh
Confidence 6899985 577888877666553 5679999999997776666655431 000 133446777654332
Q ss_pred --------hcCceEEEec---CCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHH
Q 018506 185 --------EAGTLTFMVG---GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAV 236 (355)
Q Consensus 185 --------~~g~~~~~~g---g~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~ 236 (355)
..|...+++- .++++++.++++++.+|.+++.+.+-.....+-++..+....
T Consensus 66 ~~~a~~~Lf~~~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~~~~HD~~~A~iShlpH~~ 128 (673)
T PRK11861 66 VDAALADLYVGRNVVLCALPENAPDALARVEAMWRAARADVRAMSAEQHDRVFAAVSHLPHVL 128 (673)
T ss_pred hhhhChhHhCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHHHHHHHHhhHHHHH
Confidence 4677677773 367889999999999999999999877887776666664443
|
|
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.017 Score=55.32 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=32.8
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
|++|.|||.|..|..+|..|+++|++|+++++.++
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~ 35 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG 35 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence 57899999999999999999999999999998765
|
|
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.032 Score=53.78 Aligned_cols=38 Identities=18% Similarity=0.242 Sum_probs=33.5
Q ss_pred CCCceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhH
Q 018506 43 CQFESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNV 80 (355)
Q Consensus 43 ~~~mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~ 80 (355)
...|||.|+|. |.+|+.+++.|.++||+|++++|++++
T Consensus 58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~ 96 (390)
T PLN02657 58 PKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSG 96 (390)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhh
Confidence 34678999975 999999999999999999999998754
|
|
| >PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.016 Score=44.81 Aligned_cols=82 Identities=17% Similarity=0.257 Sum_probs=53.5
Q ss_pred HhHHHHHHHHHCCCcEEEEeCChhHHHHHH---hCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHH-hcCCCccccCCCC
Q 018506 56 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS---DMGVPTKETPFEVAEASDVVITMLPSSSHVLDV-YNGPNGLLQGGNS 131 (355)
Q Consensus 56 mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~---~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~v-l~~~~~~l~~~~~ 131 (355)
-+..++..|.+.|.+|.+||..-....... ..++...+++.++.+.+|+||++++-+ ..+.+ ...+...+
T Consensus 18 p~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~-~f~~l~~~~~~~~~----- 91 (106)
T PF03720_consen 18 PALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHD-EFRELDWEEIAKLM----- 91 (106)
T ss_dssp HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--G-GGGCCGHHHHHHHS-----
T ss_pred HHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCH-HHhccCHHHHHHhc-----
Confidence 456789999999999999998766554443 246777889999999999999999754 33221 11111112
Q ss_pred CCCeEEEEcCCC
Q 018506 132 VRPQLLIDSSTI 143 (355)
Q Consensus 132 ~~~~ivi~~st~ 143 (355)
.++.+|+|+-+.
T Consensus 92 ~~~~~iiD~~~~ 103 (106)
T PF03720_consen 92 RKPPVIIDGRNI 103 (106)
T ss_dssp CSSEEEEESSST
T ss_pred CCCCEEEECccc
Confidence 145689998664
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B .... |
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.063 Score=53.03 Aligned_cols=35 Identities=31% Similarity=0.407 Sum_probs=32.1
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCCh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 78 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~ 78 (355)
+..+|.|||.|..|...|..|.+.|++|+++++.+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~ 174 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHP 174 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 44689999999999999999999999999998764
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.18 Score=49.37 Aligned_cols=65 Identities=18% Similarity=0.202 Sum_probs=47.2
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhH--HHHHHh--CCCCCC--CCHHHHhhcCCEEEEeC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNV--MKMFSD--MGVPTK--ETPFEVAEASDVVITML 109 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~--~~~l~~--~g~~~~--~s~~e~~~~aDiVi~~v 109 (355)
.++|.|+|.|..|.+.|+.|++.|++|+++|.++.. .+++.+ .|+... ....+...++|+||.+.
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~sp 75 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSP 75 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECC
Confidence 468999999999999999999999999999976542 344443 254331 11233446899999884
|
|
| >COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.026 Score=54.29 Aligned_cols=67 Identities=21% Similarity=0.207 Sum_probs=49.5
Q ss_pred CCCceEEEEcccHHhHHHHH-HHHHC-----CCcEEEEeCChhHHHHH-------Hh-CC----CCCCCCHHHHhhcCCE
Q 018506 43 CQFESVGFIGLGNMGFRMAS-NLMKA-----GYKMAVHDVNCNVMKMF-------SD-MG----VPTKETPFEVAEASDV 104 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~-~L~~~-----G~~V~v~dr~~~~~~~l-------~~-~g----~~~~~s~~e~~~~aDi 104 (355)
++++||+|||.|..+++.-. .+... +.++.++|.++++.+.. .+ .| +..++|.+++++++|+
T Consensus 1 m~~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~~eAl~gAdf 80 (442)
T COG1486 1 MKKFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEAGAPVKVEATTDRREALEGADF 80 (442)
T ss_pred CCcceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHHHHHHHhhCCCeEEEEecCHHHHhcCCCE
Confidence 35689999999998876432 22222 45899999999987632 22 23 3457899999999999
Q ss_pred EEEeC
Q 018506 105 VITML 109 (355)
Q Consensus 105 Vi~~v 109 (355)
|+.++
T Consensus 81 Vi~~~ 85 (442)
T COG1486 81 VITQI 85 (442)
T ss_pred EEEEE
Confidence 99996
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.053 Score=49.23 Aligned_cols=42 Identities=17% Similarity=0.173 Sum_probs=35.7
Q ss_pred CceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 45 FESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 45 ~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
.++|-|.| .|.+|..+++.|++.|++|++.+|++++++.+.+
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~ 45 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLAS 45 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh
Confidence 45688887 5999999999999999999999999888766543
|
|
| >PRK00711 D-amino acid dehydrogenase small subunit; Validated | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.018 Score=55.71 Aligned_cols=34 Identities=29% Similarity=0.314 Sum_probs=31.8
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
|+|.|||.|.+|.+.|..|+++|++|+++++...
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~ 34 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG 34 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 6899999999999999999999999999999754
|
|
| >PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.023 Score=40.12 Aligned_cols=30 Identities=40% Similarity=0.585 Sum_probs=27.0
Q ss_pred EEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 50 FIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 50 iIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
|||.|.-|...|..|.++|++|+++++++.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 799999999999999999999999998753
|
... |
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.048 Score=55.22 Aligned_cols=70 Identities=21% Similarity=0.289 Sum_probs=50.2
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCCh---------------------hHHHHHHhCCCCCC------C--
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC---------------------NVMKMFSDMGVPTK------E-- 93 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~---------------------~~~~~l~~~g~~~~------~-- 93 (355)
....+|.|||+|..|...|..|.+.|++|+++++.+ .+++.+.+.|+... .
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~ 214 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDI 214 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcC
Confidence 445789999999999999999999999999998642 23444555664321 1
Q ss_pred CHHHHhhcCCEEEEeCCCc
Q 018506 94 TPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 94 s~~e~~~~aDiVi~~v~~~ 112 (355)
+..+.....|+||+++-..
T Consensus 215 ~~~~~~~~~D~Vi~AtG~~ 233 (564)
T PRK12771 215 TLEQLEGEFDAVFVAIGAQ 233 (564)
T ss_pred CHHHHHhhCCEEEEeeCCC
Confidence 2333345689999998543
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.062 Score=49.94 Aligned_cols=36 Identities=19% Similarity=0.210 Sum_probs=32.0
Q ss_pred CceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhH
Q 018506 45 FESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNV 80 (355)
Q Consensus 45 ~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~ 80 (355)
-++|.|.| +|.+|+.++..|++.||+|.+.+|+++.
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~ 40 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPND 40 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCc
Confidence 47899998 6999999999999999999999887654
|
|
| >PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.15 Score=50.26 Aligned_cols=63 Identities=24% Similarity=0.314 Sum_probs=45.8
Q ss_pred eEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh-HH----HHHHhCCCCCCC--CHH-----HHhhcCCEEEEeC
Q 018506 47 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN-VM----KMFSDMGVPTKE--TPF-----EVAEASDVVITML 109 (355)
Q Consensus 47 kIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~-~~----~~l~~~g~~~~~--s~~-----e~~~~aDiVi~~v 109 (355)
||.|||+|..|.+.|+.|.+.|++|.++|+.+. .. +.+.+.|+.... ... +...+.|+||.+-
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~ 76 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVSP 76 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEECC
Confidence 699999999999999999999999999997643 22 235555654321 111 3566899998863
|
|
| >COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.055 Score=53.03 Aligned_cols=70 Identities=23% Similarity=0.263 Sum_probs=53.7
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh---------------------HHHHHHhCCCCC--------CC
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN---------------------VMKMFSDMGVPT--------KE 93 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~---------------------~~~~l~~~g~~~--------~~ 93 (355)
..-.+|+|||.|.-|.+-|..|+++||+|++|++.+. .++.+.+.|+.+ .-
T Consensus 121 ~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~~i 200 (457)
T COG0493 121 RTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGRDI 200 (457)
T ss_pred CCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECCcC
Confidence 3448999999999999999999999999999988654 123344444221 34
Q ss_pred CHHHHhhcCCEEEEeCCCc
Q 018506 94 TPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 94 s~~e~~~~aDiVi~~v~~~ 112 (355)
+.+++.+.-|.|++++.+.
T Consensus 201 t~~~L~~e~Dav~l~~G~~ 219 (457)
T COG0493 201 TLEELLKEYDAVFLATGAG 219 (457)
T ss_pred CHHHHHHhhCEEEEecccc
Confidence 7888888889999997543
|
|
| >PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.042 Score=58.16 Aligned_cols=65 Identities=22% Similarity=0.297 Sum_probs=48.8
Q ss_pred CCceEEEEcccHHhHHH-HHHHHHCCCcEEEEeCCh-hHHHHHHhCCCCCC-CCHHHHhhcCCEEEEe
Q 018506 44 QFESVGFIGLGNMGFRM-ASNLMKAGYKMAVHDVNC-NVMKMFSDMGVPTK-ETPFEVAEASDVVITM 108 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~i-a~~L~~~G~~V~v~dr~~-~~~~~l~~~g~~~~-~s~~e~~~~aDiVi~~ 108 (355)
++.+|.|||+|..|.+. |+.|.+.|++|+++|.++ ...+.+.+.|+... ....+.+..+|+||..
T Consensus 3 ~~~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~gi~~~~g~~~~~~~~~d~vV~S 70 (809)
T PRK14573 3 KSLFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKGARFFLGHQEEHVPEDAVVVYS 70 (809)
T ss_pred CcceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHcCCCCEEEEC
Confidence 44569999999999997 999999999999999654 33455666676442 1233556689999877
|
|
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.033 Score=52.65 Aligned_cols=89 Identities=18% Similarity=0.234 Sum_probs=52.1
Q ss_pred ceEEEEcc-cHHhHHHHHHHHHCC-CcEEEE-eCChhHHHHHHhC-------CC----C---CCCCHHHHhhcCCEEEEe
Q 018506 46 ESVGFIGL-GNMGFRMASNLMKAG-YKMAVH-DVNCNVMKMFSDM-------GV----P---TKETPFEVAEASDVVITM 108 (355)
Q Consensus 46 mkIgiIG~-G~mG~~ia~~L~~~G-~~V~v~-dr~~~~~~~l~~~-------g~----~---~~~s~~e~~~~aDiVi~~ 108 (355)
|||+|+|+ |.||..+++.|.+.. +++... +++++.-+.+.+. +. . +.+...+...++|+||+|
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVf~a 80 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDVDIVFSA 80 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccCCEEEEe
Confidence 68999995 999999999998876 476655 5443221222110 00 0 001122345789999999
Q ss_pred CCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCC
Q 018506 109 LPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 143 (355)
Q Consensus 109 v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~ 143 (355)
+|..... .+... ... .|..+||.|..
T Consensus 81 ~p~~~s~-~~~~~---~~~-----~G~~VIDlsg~ 106 (341)
T TIGR00978 81 LPSEVAE-EVEPK---LAE-----AGKPVFSNASN 106 (341)
T ss_pred CCHHHHH-HHHHH---HHH-----CCCEEEECChh
Confidence 9976333 33221 221 34567787765
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.081 Score=48.36 Aligned_cols=76 Identities=12% Similarity=0.184 Sum_probs=58.4
Q ss_pred CCceEEEEccc-HHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 44 QFESVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~G-~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
.-.+|.|||-+ .+|.+++..|.+.|..|++++.. +.++.+.+++||+||+++..+..+..
T Consensus 154 ~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~--------------T~~l~~~~~~ADIvIsAvGkp~~i~~----- 214 (287)
T PRK14173 154 AGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSK--------------TQDLPAVTRRADVLVVAVGRPHLITP----- 214 (287)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEecCCcCccCH-----
Confidence 34789999764 68999999999999999998743 23577888999999999987743322
Q ss_pred CccccCCCCCCCeEEEEcCCCC
Q 018506 123 NGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.+++ +|.+|||.+...
T Consensus 215 -~~vk-----~GavVIDVGin~ 230 (287)
T PRK14173 215 -EMVR-----PGAVVVDVGINR 230 (287)
T ss_pred -HHcC-----CCCEEEEccCcc
Confidence 2443 567999987764
|
|
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.027 Score=53.40 Aligned_cols=90 Identities=17% Similarity=0.226 Sum_probs=53.2
Q ss_pred CceEEEEcc-cHHhHHHHH-HHHHCCCc---EEEEeCC--hhHHHHHHhCCCCCC--CCHHHHhhcCCEEEEeCCCchHH
Q 018506 45 FESVGFIGL-GNMGFRMAS-NLMKAGYK---MAVHDVN--CNVMKMFSDMGVPTK--ETPFEVAEASDVVITMLPSSSHV 115 (355)
Q Consensus 45 ~mkIgiIG~-G~mG~~ia~-~L~~~G~~---V~v~dr~--~~~~~~l~~~g~~~~--~s~~e~~~~aDiVi~~v~~~~~~ 115 (355)
|++|||||+ |.+|.-|.+ .|.+..++ +..+... ..+...+........ .+. +..+++|++|+|+|.. ..
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g~~~~v~~~~~~-~~~~~~Divf~a~~~~-~s 78 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGGKEGTLQDAFDI-DALKKLDIIITCQGGD-YT 78 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCCCcceEEecCCh-hHhcCCCEEEECCCHH-HH
Confidence 479999987 999999998 56666666 6655432 111112222111222 223 3347899999999875 44
Q ss_pred HHHhcCCCccccCCCCCCC--eEEEEcCCCC
Q 018506 116 LDVYNGPNGLLQGGNSVRP--QLLIDSSTID 144 (355)
Q Consensus 116 ~~vl~~~~~~l~~~~~~~~--~ivi~~st~~ 144 (355)
+.+... +.+ .| .+|||.|+..
T Consensus 79 ~~~~~~---~~~-----aG~~~~VID~Ss~f 101 (369)
T PRK06598 79 NEVYPK---LRA-----AGWQGYWIDAASTL 101 (369)
T ss_pred HHHHHH---HHh-----CCCCeEEEECChHH
Confidence 444332 222 33 4689988743
|
|
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.065 Score=50.89 Aligned_cols=34 Identities=21% Similarity=0.295 Sum_probs=30.1
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCCh
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNC 78 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~ 78 (355)
..+|+|||+|..|+.++..|++.|. +++++|.+.
T Consensus 176 ~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~ 210 (393)
T PRK06153 176 GQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDD 210 (393)
T ss_pred hCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCE
Confidence 4689999999999999999999996 688888653
|
|
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.025 Score=54.40 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=32.4
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
.++|.|||.|..|.++|..|.+.|++|++++|+++
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~ 38 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence 36899999999999999999999999999998764
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.076 Score=50.45 Aligned_cols=35 Identities=26% Similarity=0.305 Sum_probs=31.0
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCCh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNC 78 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~ 78 (355)
...||.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 44789999999999999999999997 588888765
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.084 Score=46.91 Aligned_cols=43 Identities=19% Similarity=0.165 Sum_probs=35.9
Q ss_pred CCCceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH
Q 018506 43 CQFESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 85 (355)
Q Consensus 43 ~~~mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~ 85 (355)
++.++|-|.|. |.+|..+++.|.+.|++|.+.+|++++.+.+.
T Consensus 5 ~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 48 (250)
T PRK12939 5 LAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELA 48 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 34467888875 99999999999999999999999988766543
|
|
| >PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.1 Score=47.64 Aligned_cols=76 Identities=11% Similarity=0.162 Sum_probs=58.8
Q ss_pred CCceEEEEccc-HHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 44 QFESVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~G-~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
.-.+|.|||-+ .+|.+++..|.++|..|++++.. +.++.+..++||+||.++..+.-+..
T Consensus 158 ~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~--------------T~~l~~~~~~ADIvIsAvGk~~~i~~----- 218 (284)
T PRK14177 158 TGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSK--------------TQNLPSIVRQADIIVGAVGKPEFIKA----- 218 (284)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEeCCCcCccCH-----
Confidence 34789999765 68999999999999999999743 24677888999999999987744332
Q ss_pred CccccCCCCCCCeEEEEcCCCC
Q 018506 123 NGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.+++ +|.+|||.+.+.
T Consensus 219 -~~ik-----~gavVIDvGin~ 234 (284)
T PRK14177 219 -DWIS-----EGAVLLDAGYNP 234 (284)
T ss_pred -HHcC-----CCCEEEEecCcc
Confidence 2443 567999998764
|
|
| >PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.093 Score=47.76 Aligned_cols=76 Identities=16% Similarity=0.244 Sum_probs=58.4
Q ss_pred CCceEEEEccc-HHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 44 QFESVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~G-~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
.-.++.|||-+ .+|.+++..|.++|..|++++.. +.++.+.+++||+||.++..+..+..
T Consensus 157 ~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~--------------T~~l~~~~~~ADIvIsAvGkp~~i~~----- 217 (278)
T PRK14172 157 EGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSK--------------TKNLKEVCKKADILVVAIGRPKFIDE----- 217 (278)
T ss_pred CCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEcCCCcCccCH-----
Confidence 44789999765 68999999999999999999753 23678888999999999988744332
Q ss_pred CccccCCCCCCCeEEEEcCCCC
Q 018506 123 NGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.+++ +|.+|||...+.
T Consensus 218 -~~ik-----~gavVIDvGin~ 233 (278)
T PRK14172 218 -EYVK-----EGAIVIDVGTSS 233 (278)
T ss_pred -HHcC-----CCcEEEEeeccc
Confidence 2443 567999986654
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.071 Score=47.11 Aligned_cols=41 Identities=22% Similarity=0.228 Sum_probs=35.0
Q ss_pred CCceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHH
Q 018506 44 QFESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMF 84 (355)
Q Consensus 44 ~~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l 84 (355)
..++|-|.| .|.+|..+++.|+++|++|++++|++++.+.+
T Consensus 4 ~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~ 45 (246)
T PRK05653 4 QGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEAL 45 (246)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHH
Confidence 346788997 59999999999999999999999998776544
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.078 Score=50.32 Aligned_cols=74 Identities=20% Similarity=0.254 Sum_probs=53.1
Q ss_pred eEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHh-CCCCCCCCHH---------HHh--hcCCEEEEeCCCch
Q 018506 47 SVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSD-MGVPTKETPF---------EVA--EASDVVITMLPSSS 113 (355)
Q Consensus 47 kIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~-~g~~~~~s~~---------e~~--~~aDiVi~~v~~~~ 113 (355)
++.|+|+|.+|...+..+...|. +|++.|+++++++..++ .+.....+.. +.. ..+|++|.|+..+.
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~~~ 250 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGSPP 250 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCCCHH
Confidence 79999999999999888888885 68888999999988877 4443222211 111 24888888888665
Q ss_pred HHHHHhc
Q 018506 114 HVLDVYN 120 (355)
Q Consensus 114 ~~~~vl~ 120 (355)
.+.+.+.
T Consensus 251 ~~~~ai~ 257 (350)
T COG1063 251 ALDQALE 257 (350)
T ss_pred HHHHHHH
Confidence 5555544
|
|
| >PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.1 Score=48.03 Aligned_cols=76 Identities=9% Similarity=0.152 Sum_probs=58.3
Q ss_pred CCceEEEEccc-HHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 44 QFESVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~G-~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
.-.+|.|||-+ .+|.+++..|.++|..|++++.. +.++.+.+++||+||+++..+..+..
T Consensus 157 ~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~--------------T~~l~~~~~~ADIvIsAvGkp~~i~~----- 217 (297)
T PRK14186 157 AGKKAVVVGRSILVGKPLALMLLAANATVTIAHSR--------------TQDLASITREADILVAAAGRPNLIGA----- 217 (297)
T ss_pred CCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEccCCcCccCH-----
Confidence 34789999865 58999999999999999998642 23677888999999999987743332
Q ss_pred CccccCCCCCCCeEEEEcCCCC
Q 018506 123 NGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.+++ +|.+|||.+...
T Consensus 218 -~~ik-----~gavVIDvGin~ 233 (297)
T PRK14186 218 -EMVK-----PGAVVVDVGIHR 233 (297)
T ss_pred -HHcC-----CCCEEEEecccc
Confidence 2443 567999997664
|
|
| >PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.099 Score=47.67 Aligned_cols=76 Identities=9% Similarity=0.158 Sum_probs=58.2
Q ss_pred CCceEEEEccc-HHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 44 QFESVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~G-~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
.-.+|.|||-+ .+|.+++..|.++|..|++++.. +.++.+.+++||+||+++..+..+..
T Consensus 155 ~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~--------------T~~l~~~~~~ADIvI~AvG~p~~i~~----- 215 (282)
T PRK14169 155 AGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSK--------------TRNLKQLTKEADILVVAVGVPHFIGA----- 215 (282)
T ss_pred CCCEEEEECCCccchHHHHHHHHHCCCEEEEECCC--------------CCCHHHHHhhCCEEEEccCCcCccCH-----
Confidence 34789999865 58999999999999999998642 23577888999999999988744332
Q ss_pred CccccCCCCCCCeEEEEcCCCC
Q 018506 123 NGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.+++ +|.++||.+...
T Consensus 216 -~~vk-----~GavVIDvGin~ 231 (282)
T PRK14169 216 -DAVK-----PGAVVIDVGISR 231 (282)
T ss_pred -HHcC-----CCcEEEEeeccc
Confidence 2443 567999987654
|
|
| >PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.099 Score=47.69 Aligned_cols=76 Identities=16% Similarity=0.222 Sum_probs=58.7
Q ss_pred CCceEEEEccc-HHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 44 QFESVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~G-~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
.-.+|.|||-+ .+|.+++..|.+.|..|++++... .++.+..++||+||.++..+..+..
T Consensus 156 ~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T--------------~nl~~~~~~ADIvIsAvGkp~~i~~----- 216 (282)
T PRK14166 156 EGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT--------------KDLSLYTRQADLIIVAAGCVNLLRS----- 216 (282)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEcCCCcCccCH-----
Confidence 44789999865 589999999999999999987532 4577888999999999987744332
Q ss_pred CccccCCCCCCCeEEEEcCCCC
Q 018506 123 NGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.+++ +|.++||.+...
T Consensus 217 -~~vk-----~GavVIDvGin~ 232 (282)
T PRK14166 217 -DMVK-----EGVIVVDVGINR 232 (282)
T ss_pred -HHcC-----CCCEEEEecccc
Confidence 2443 567999987654
|
|
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.037 Score=48.06 Aligned_cols=36 Identities=31% Similarity=0.429 Sum_probs=31.4
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCN 79 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~ 79 (355)
...||.|||+|.+|+.++++|+..|. +++++|.+.-
T Consensus 18 ~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~v 54 (198)
T cd01485 18 RSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLV 54 (198)
T ss_pred hhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcC
Confidence 45789999999999999999999996 5999987643
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.1 Score=47.64 Aligned_cols=76 Identities=11% Similarity=0.126 Sum_probs=57.9
Q ss_pred CCceEEEEccc-HHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 44 QFESVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~G-~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
.-.+|.|||-+ .+|.+++..|.++|..|++++.. +.++.+..++||+||+++..+.-+..
T Consensus 157 ~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~--------------T~dl~~~~k~ADIvIsAvGkp~~i~~----- 217 (282)
T PRK14180 157 EGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRF--------------TTDLKSHTTKADILIVAVGKPNFITA----- 217 (282)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCC--------------CCCHHHHhhhcCEEEEccCCcCcCCH-----
Confidence 34789999765 68999999999999999999753 23667778999999999987744332
Q ss_pred CccccCCCCCCCeEEEEcCCCC
Q 018506 123 NGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.+++ +|.+|||.+...
T Consensus 218 -~~vk-----~gavVIDvGin~ 233 (282)
T PRK14180 218 -DMVK-----EGAVVIDVGINH 233 (282)
T ss_pred -HHcC-----CCcEEEEecccc
Confidence 2443 567999987654
|
|
| >PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.09 Score=49.11 Aligned_cols=76 Identities=18% Similarity=0.214 Sum_probs=58.4
Q ss_pred CCceEEEEccc-HHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 44 QFESVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~G-~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
.-.+|.|||-+ .+|.+++..|.++|..|++++.. +.++.+.+++|||||.++..+.-+..
T Consensus 213 ~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~--------------T~nl~~~~~~ADIvIsAvGkp~~v~~----- 273 (345)
T PLN02897 213 AGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAF--------------TKDPEQITRKADIVIAAAGIPNLVRG----- 273 (345)
T ss_pred CCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCC--------------CCCHHHHHhhCCEEEEccCCcCccCH-----
Confidence 44789999865 57999999999999999998743 23567888999999999987744332
Q ss_pred CccccCCCCCCCeEEEEcCCCC
Q 018506 123 NGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.+++ +|.+|||.+...
T Consensus 274 -d~vk-----~GavVIDVGin~ 289 (345)
T PLN02897 274 -SWLK-----PGAVVIDVGTTP 289 (345)
T ss_pred -HHcC-----CCCEEEEccccc
Confidence 2443 567999997754
|
|
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.075 Score=50.75 Aligned_cols=43 Identities=14% Similarity=0.238 Sum_probs=35.4
Q ss_pred CCCCceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHH
Q 018506 42 SCQFESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMF 84 (355)
Q Consensus 42 ~~~~mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l 84 (355)
.+.+++|.|.|. |.+|+.++..|++.||+|.++.|+.+..+.+
T Consensus 50 ~~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~~~~~~l 93 (367)
T PLN02686 50 DAEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQEDKEKL 93 (367)
T ss_pred CCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 355678888865 9999999999999999999888877665544
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.12 Score=48.74 Aligned_cols=43 Identities=14% Similarity=0.147 Sum_probs=35.5
Q ss_pred CCCceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH
Q 018506 43 CQFESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 85 (355)
Q Consensus 43 ~~~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~ 85 (355)
+..++|-|.| .|.+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 6 l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~ 49 (334)
T PRK07109 6 IGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALA 49 (334)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 3445677776 599999999999999999999999988776554
|
|
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.029 Score=52.49 Aligned_cols=34 Identities=24% Similarity=0.408 Sum_probs=29.8
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
.+|.|||+|.-|..+|..|+++|++|+++++++.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhccc
Confidence 4799999999999999999999999999998765
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.11 Score=47.48 Aligned_cols=76 Identities=11% Similarity=0.113 Sum_probs=58.0
Q ss_pred CCceEEEEcc-cHHhHHHHHHHHH--CCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhc
Q 018506 44 QFESVGFIGL-GNMGFRMASNLMK--AGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYN 120 (355)
Q Consensus 44 ~~mkIgiIG~-G~mG~~ia~~L~~--~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~ 120 (355)
.-.++.|||- ..+|.+++..|.+ ++..|++++.. +.++.+.+++||+||.++..+..+..
T Consensus 157 ~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~--------------T~~l~~~~k~ADIvV~AvGkp~~i~~--- 219 (284)
T PRK14193 157 AGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG--------------TRDLAAHTRRADIIVAAAGVAHLVTA--- 219 (284)
T ss_pred CCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC--------------CCCHHHHHHhCCEEEEecCCcCccCH---
Confidence 3478999975 5689999999998 67889998753 34678889999999999987743322
Q ss_pred CCCccccCCCCCCCeEEEEcCCCC
Q 018506 121 GPNGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 121 ~~~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.+++ +|.++||.+...
T Consensus 220 ---~~ik-----~GavVIDvGin~ 235 (284)
T PRK14193 220 ---DMVK-----PGAAVLDVGVSR 235 (284)
T ss_pred ---HHcC-----CCCEEEEccccc
Confidence 2443 567999987654
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.11 Score=47.31 Aligned_cols=42 Identities=14% Similarity=0.128 Sum_probs=35.6
Q ss_pred CceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 45 FESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 45 ~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
+++|-|.| .|.+|..+++.|++.|++|++.+|++++.+.+.+
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~ 46 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEA 46 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHh
Confidence 35677775 5999999999999999999999999888766654
|
|
| >PRK07538 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.029 Score=54.40 Aligned_cols=34 Identities=24% Similarity=0.274 Sum_probs=32.1
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
|+|.|||+|..|.++|..|.++|++|+++++.++
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence 6899999999999999999999999999998764
|
|
| >PLN00198 anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.082 Score=49.65 Aligned_cols=38 Identities=16% Similarity=0.196 Sum_probs=32.7
Q ss_pred CCCceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhH
Q 018506 43 CQFESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNV 80 (355)
Q Consensus 43 ~~~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~ 80 (355)
+++++|.|.| +|.+|+.++..|.+.|++|.+..|+++.
T Consensus 7 ~~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~~~~ 45 (338)
T PLN00198 7 TGKKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDPEN 45 (338)
T ss_pred CCCCeEEEECCchHHHHHHHHHHHHCCCEEEEEECCCCC
Confidence 4568899996 8999999999999999999888777543
|
|
| >PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.049 Score=52.15 Aligned_cols=64 Identities=27% Similarity=0.356 Sum_probs=45.7
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhH-HHHHHhCCCC-CCCC---HHHHhhcCCEEEEe
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNV-MKMFSDMGVP-TKET---PFEVAEASDVVITM 108 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~-~~~l~~~g~~-~~~s---~~e~~~~aDiVi~~ 108 (355)
|++|||||.|..|..++....+.|++|.++|.+++. ...+.+.-+. ...+ +.+.++.+|+|...
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~e 70 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITYE 70 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEeC
Confidence 578999999999999999999999999999987654 2333322111 1223 44567789987543
|
|
| >PRK06392 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.051 Score=50.90 Aligned_cols=66 Identities=21% Similarity=0.343 Sum_probs=40.6
Q ss_pred ceEEEEcccHHhHHHHHHHHHC------C--Cc-EEEEeCChhHH-------HHH---HhCC-C--CCCC--CHHHHh-h
Q 018506 46 ESVGFIGLGNMGFRMASNLMKA------G--YK-MAVHDVNCNVM-------KMF---SDMG-V--PTKE--TPFEVA-E 100 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~------G--~~-V~v~dr~~~~~-------~~l---~~~g-~--~~~~--s~~e~~-~ 100 (355)
|||+|||+|++|+.+++.|.+. | .+ |.++|++.... +.+ .+.+ . .... +..++. .
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~ 80 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEI 80 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcC
Confidence 5899999999999999999873 3 34 34557654221 111 1111 1 1112 444443 3
Q ss_pred cCCEEEEeCCC
Q 018506 101 ASDVVITMLPS 111 (355)
Q Consensus 101 ~aDiVi~~v~~ 111 (355)
++|+||-|.++
T Consensus 81 ~~DVvVE~t~~ 91 (326)
T PRK06392 81 KPDVIVDVTPA 91 (326)
T ss_pred CCCEEEECCCC
Confidence 68999999874
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.077 Score=50.21 Aligned_cols=42 Identities=14% Similarity=0.169 Sum_probs=35.6
Q ss_pred CCCceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHH
Q 018506 43 CQFESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMF 84 (355)
Q Consensus 43 ~~~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l 84 (355)
...|||-|.| +|.+|+.+++.|++.|++|++.+|++++.+.+
T Consensus 8 ~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~ 50 (353)
T PLN02896 8 SATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHL 50 (353)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHH
Confidence 3558999997 69999999999999999999999987765543
|
|
| >PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.038 Score=53.39 Aligned_cols=59 Identities=15% Similarity=0.062 Sum_probs=42.2
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHh--hcCCEEEEe
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVA--EASDVVITM 108 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~--~~aDiVi~~ 108 (355)
|+|.|+|+|.-|.++|+.|. .|++|+++|..+.... +.+.|+... . .+.. +++|+||..
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~~~~-~~~~gi~~~-~-~~~~~~~~~d~vv~s 61 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDKFTESH-KDEEGNLLL-P-SNDFDPNKSDLEIPS 61 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCCccc-hhhcCCEEe-c-HHHcCcCCCCEEEEC
Confidence 78999999999999999999 9999999996543221 222354442 2 2223 468988876
|
|
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.092 Score=48.78 Aligned_cols=38 Identities=21% Similarity=0.472 Sum_probs=31.5
Q ss_pred eEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHH
Q 018506 47 SVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMF 84 (355)
Q Consensus 47 kIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l 84 (355)
||.|||+|.+|+.++++|+..|. +++++|.+.-....+
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNL 39 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNL 39 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhc
Confidence 68999999999999999999996 588998765444444
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.078 Score=50.08 Aligned_cols=66 Identities=17% Similarity=0.115 Sum_probs=45.9
Q ss_pred CCceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHH-----HHHhC--CC-----C--CCCCHHHHhhcCCEEEEe
Q 018506 44 QFESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMK-----MFSDM--GV-----P--TKETPFEVAEASDVVITM 108 (355)
Q Consensus 44 ~~mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~-----~l~~~--g~-----~--~~~s~~e~~~~aDiVi~~ 108 (355)
++++|.|.|. |.+|+.++..|.++||+|.+..|+.+... .+... .+ . -..+..++++.+|+||-+
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih~ 88 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVFHT 88 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEEEe
Confidence 4578999986 99999999999999999999999766421 11110 11 1 112345566778888877
Q ss_pred C
Q 018506 109 L 109 (355)
Q Consensus 109 v 109 (355)
.
T Consensus 89 A 89 (342)
T PLN02214 89 A 89 (342)
T ss_pred c
Confidence 5
|
|
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.097 Score=51.77 Aligned_cols=36 Identities=28% Similarity=0.373 Sum_probs=32.5
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCCh
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 78 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~ 78 (355)
...++|.|||.|..|...|..|++.|++|+++++.+
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~ 176 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERAD 176 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 345789999999999999999999999999999764
|
|
| >PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.12 Score=47.32 Aligned_cols=76 Identities=12% Similarity=0.188 Sum_probs=57.9
Q ss_pred CCceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 44 QFESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
.-.+|.|||- ..+|.+++..|.++|..|++++.. +.++.+.+++||+||.++..+.-+..
T Consensus 157 ~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~--------------t~~l~~~~~~ADIvI~AvG~p~~i~~----- 217 (284)
T PRK14190 157 SGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSK--------------TKNLAELTKQADILIVAVGKPKLITA----- 217 (284)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCC--------------chhHHHHHHhCCEEEEecCCCCcCCH-----
Confidence 4478999975 568999999999999999998642 23677888999999999987743222
Q ss_pred CccccCCCCCCCeEEEEcCCCC
Q 018506 123 NGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.+++ +|.+|||.+...
T Consensus 218 -~~ik-----~gavVIDvGi~~ 233 (284)
T PRK14190 218 -DMVK-----EGAVVIDVGVNR 233 (284)
T ss_pred -HHcC-----CCCEEEEeeccc
Confidence 2443 567999987654
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.12 Score=48.58 Aligned_cols=41 Identities=12% Similarity=0.207 Sum_probs=34.8
Q ss_pred CceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH
Q 018506 45 FESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 85 (355)
Q Consensus 45 ~mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~ 85 (355)
.++|-|.|+ |.+|..+++.|++.|++|++.+|++++.+++.
T Consensus 7 ~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~ 48 (330)
T PRK06139 7 GAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVA 48 (330)
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 345777766 89999999999999999999999998876654
|
|
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.069 Score=57.20 Aligned_cols=68 Identities=15% Similarity=0.130 Sum_probs=50.7
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh---------------------HHHHHHhCCCCC--------CCC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN---------------------VMKMFSDMGVPT--------KET 94 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~---------------------~~~~l~~~g~~~--------~~s 94 (355)
...||+|||.|.-|.+-|..|++.||+|++|++.+. .++.+.+.|+.+ .-+
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG~dit 384 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVGKTAT 384 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEeccEEe
Confidence 457899999999999999999999999999987642 123444455542 124
Q ss_pred HHHHhh-cCCEEEEeCCC
Q 018506 95 PFEVAE-ASDVVITMLPS 111 (355)
Q Consensus 95 ~~e~~~-~aDiVi~~v~~ 111 (355)
.+++.+ ..|.||+++-.
T Consensus 385 ~~~l~~~~yDAV~LAtGA 402 (944)
T PRK12779 385 LEDLKAAGFWKIFVGTGA 402 (944)
T ss_pred HHHhccccCCEEEEeCCC
Confidence 566654 68999999743
|
|
| >PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.12 Score=47.41 Aligned_cols=76 Identities=13% Similarity=0.159 Sum_probs=58.4
Q ss_pred CCceEEEEccc-HHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 44 QFESVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~G-~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
.-.+|.|||-+ .+|.+++..|.++|..|++++.. +.++.+.+++||+||.++..+.-+..
T Consensus 159 ~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~--------------T~~l~~~~~~ADIvVsAvGkp~~i~~----- 219 (294)
T PRK14187 159 SGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSA--------------TRDLADYCSKADILVAAVGIPNFVKY----- 219 (294)
T ss_pred CCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEccCCcCccCH-----
Confidence 44789999765 57999999999999999998753 24577888999999999988744332
Q ss_pred CccccCCCCCCCeEEEEcCCCC
Q 018506 123 NGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.+++ ++.+|||...+.
T Consensus 220 -~~ik-----~gaiVIDVGin~ 235 (294)
T PRK14187 220 -SWIK-----KGAIVIDVGINS 235 (294)
T ss_pred -HHcC-----CCCEEEEecccc
Confidence 2443 567999987653
|
|
| >PRK07588 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.034 Score=53.40 Aligned_cols=34 Identities=21% Similarity=0.163 Sum_probs=31.6
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
|+|.|||.|..|..+|..|++.|++|+++++.++
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence 5899999999999999999999999999998654
|
|
| >PRK05678 succinyl-CoA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.2 Score=46.06 Aligned_cols=74 Identities=20% Similarity=0.251 Sum_probs=55.8
Q ss_pred CCceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhH-HHHHHhCCCCCCCCHHHHhhc--CCEEEEeCCCchHHHHHh
Q 018506 44 QFESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNV-MKMFSDMGVPTKETPFEVAEA--SDVVITMLPSSSHVLDVY 119 (355)
Q Consensus 44 ~~mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~-~~~l~~~g~~~~~s~~e~~~~--aDiVi~~v~~~~~~~~vl 119 (355)
+..||.|.|. |.+|..+..+|.+.|++ .+|-.+|.. .+++ .|.+...++.|+-+. .|+.++++|.. .+.+++
T Consensus 7 ~~~~~~v~~~~~~~g~~~l~~l~~~g~~-~v~pVnp~~~~~~v--~G~~~y~sv~dlp~~~~~DlAvi~vp~~-~v~~~l 82 (291)
T PRK05678 7 KDTKVIVQGITGKQGTFHTEQMLAYGTN-IVGGVTPGKGGTTV--LGLPVFNTVAEAVEATGANASVIYVPPP-FAADAI 82 (291)
T ss_pred CCCeEEEeCCCchHHHHHHHHHHHCCCC-EEEEECCCCCCCeE--eCeeccCCHHHHhhccCCCEEEEEcCHH-HHHHHH
Confidence 4578999998 88999999999999997 555444431 1111 467888899999876 89999999975 666655
Q ss_pred cC
Q 018506 120 NG 121 (355)
Q Consensus 120 ~~ 121 (355)
.+
T Consensus 83 ~e 84 (291)
T PRK05678 83 LE 84 (291)
T ss_pred HH
Confidence 54
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.054 Score=51.69 Aligned_cols=35 Identities=26% Similarity=0.367 Sum_probs=30.9
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCCh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNC 78 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~ 78 (355)
...+|.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 40 ~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ 75 (370)
T PRK05600 40 HNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDT 75 (370)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 34689999999999999999999996 799998764
|
|
| >PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.041 Score=53.21 Aligned_cols=35 Identities=23% Similarity=0.417 Sum_probs=32.3
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
..+|.|||+|..|.++|..|+++|++|+++++.+.
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 52 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPA 52 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCc
Confidence 46899999999999999999999999999998764
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.14 Score=46.72 Aligned_cols=45 Identities=20% Similarity=0.288 Sum_probs=38.4
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCc-EEEEeCChhHHHHHHhCCCC
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYK-MAVHDVNCNVMKMFSDMGVP 90 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~-V~v~dr~~~~~~~l~~~g~~ 90 (355)
.+|.|+|+|.+|...++.+...|.. |++.++++++.+.+.+.|+.
T Consensus 122 ~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~ 167 (280)
T TIGR03366 122 RRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGAT 167 (280)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCc
Confidence 5799999999999999998888987 88889999988877776653
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >PLN02172 flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.047 Score=53.80 Aligned_cols=37 Identities=24% Similarity=0.364 Sum_probs=33.0
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
...++|+|||+|.-|.+.|..|.+.|++|++++++..
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~ 44 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQ 44 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 3457899999999999999999999999999998753
|
|
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.06 Score=50.93 Aligned_cols=37 Identities=14% Similarity=0.025 Sum_probs=32.3
Q ss_pred CCCceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 43 CQFESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 43 ~~~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
..+|||-|.| +|.+|+.++..|.++|++|+++||...
T Consensus 13 ~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~~ 50 (348)
T PRK15181 13 LAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFST 50 (348)
T ss_pred ccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 3568999997 599999999999999999999998543
|
|
| >PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.041 Score=52.86 Aligned_cols=36 Identities=22% Similarity=0.196 Sum_probs=32.5
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCCh
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 78 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~ 78 (355)
..+.+|.|||.|..|.++|..|+++|++|+++++.+
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~ 39 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGRE 39 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 344679999999999999999999999999999865
|
|
| >PRK06847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.04 Score=52.50 Aligned_cols=35 Identities=23% Similarity=0.333 Sum_probs=32.4
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
+++|.|||.|..|..+|..|.+.|++|++++++++
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~ 38 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 56899999999999999999999999999998754
|
|
| >PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.18 Score=49.36 Aligned_cols=63 Identities=22% Similarity=0.259 Sum_probs=45.2
Q ss_pred ceEEEEcccHHhHHHHHHHHHC--CCcEEEEeCChhH--HHHHHhCCCCCC--CCHHHHhhcCCEEEEeC
Q 018506 46 ESVGFIGLGNMGFRMASNLMKA--GYKMAVHDVNCNV--MKMFSDMGVPTK--ETPFEVAEASDVVITML 109 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~--G~~V~v~dr~~~~--~~~l~~~g~~~~--~s~~e~~~~aDiVi~~v 109 (355)
++|.|||+|..|.+-++.|.+. |++|+++|..+.. .+.+.+ |+... ....+.+.++|+||.+-
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~-g~~~~~g~~~~~~~~~~d~vV~Sp 76 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPE-DVELHSGGWNLEWLLEADLVVTNP 76 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhc-CCEEEeCCCChHHhccCCEEEECC
Confidence 6799999999999999999988 5889999975432 234533 55442 11234457899888873
|
|
| >COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.032 Score=53.68 Aligned_cols=34 Identities=24% Similarity=0.427 Sum_probs=31.8
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCCh
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 78 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~ 78 (355)
+++|.|||+|..|..+|..|+++|++|+++++.+
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~ 35 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAP 35 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCc
Confidence 4679999999999999999999999999999973
|
|
| >TIGR03219 salicylate_mono salicylate 1-monooxygenase | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.038 Score=53.61 Aligned_cols=34 Identities=26% Similarity=0.304 Sum_probs=31.5
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChh
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCN 79 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~ 79 (355)
|||.|||.|.-|.++|..|.++|+ +|++|+|.++
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~ 35 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPA 35 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCc
Confidence 689999999999999999999985 9999999765
|
Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. |
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.05 Score=50.17 Aligned_cols=64 Identities=19% Similarity=0.197 Sum_probs=43.8
Q ss_pred ceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH----hCCC--CCCCCHHHHhhcC-CEEEEeC
Q 018506 46 ESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS----DMGV--PTKETPFEVAEAS-DVVITML 109 (355)
Q Consensus 46 mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~----~~g~--~~~~s~~e~~~~a-DiVi~~v 109 (355)
|+|-|.| .|.+|+.++..|.++||+|.+.+|.+....... .... .-.....+..+.. |.||-+.
T Consensus 1 ~~ILVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~d~vih~a 72 (314)
T COG0451 1 MRILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLLSGVEFVVLDLTDRDLVDELAKGVPDAVIHLA 72 (314)
T ss_pred CeEEEEcCcccHHHHHHHHHHhCCCeEEEEeCCCccccccccccceeeecccchHHHHHHHhcCCCEEEEcc
Confidence 3489998 699999999999999999999999877654432 0011 1112333344455 7887764
|
|
| >PLN02477 glutamate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.19 Score=48.55 Aligned_cols=92 Identities=16% Similarity=0.244 Sum_probs=57.1
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEE-EEeCC----------hhHHHHHHhCCC--------CCCCCHHHH-hhcC
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMA-VHDVN----------CNVMKMFSDMGV--------PTKETPFEV-AEAS 102 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~-v~dr~----------~~~~~~l~~~g~--------~~~~s~~e~-~~~a 102 (355)
.+-++|+|.|.|++|+.+|+.|.+.|..|+ +.|.+ .+.+.+..+.+. ... +.+++ ..+|
T Consensus 204 l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i-~~~e~l~~~~ 282 (410)
T PLN02477 204 IAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPI-DPDDILVEPC 282 (410)
T ss_pred ccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEe-cCccceeccc
Confidence 355789999999999999999999999987 66776 555544333211 111 22332 3489
Q ss_pred CEEEEeCCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCH
Q 018506 103 DVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDP 145 (355)
Q Consensus 103 DiVi~~v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~ 145 (355)
||++-|--....-++.... + +-++|+...+...
T Consensus 283 DvliP~Al~~~I~~~na~~----i------~ak~I~egAN~p~ 315 (410)
T PLN02477 283 DVLIPAALGGVINKENAAD----V------KAKFIVEAANHPT 315 (410)
T ss_pred cEEeeccccccCCHhHHHH----c------CCcEEEeCCCCCC
Confidence 9888774333222222211 1 3358888777764
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.082 Score=46.67 Aligned_cols=41 Identities=22% Similarity=0.353 Sum_probs=35.2
Q ss_pred CceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH
Q 018506 45 FESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 85 (355)
Q Consensus 45 ~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~ 85 (355)
.++|.|+| .|.+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~ 47 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAA 47 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHH
Confidence 36788887 599999999999999999999999988766554
|
|
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.11 Score=49.00 Aligned_cols=66 Identities=18% Similarity=0.216 Sum_probs=45.9
Q ss_pred CCceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh----CC-----------CCCCCCHHHHhhcCCEEEE
Q 018506 44 QFESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD----MG-----------VPTKETPFEVAEASDVVIT 107 (355)
Q Consensus 44 ~~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~----~g-----------~~~~~s~~e~~~~aDiVi~ 107 (355)
+.++|-|.| .|.+|+.++..|++.|++|.+.+|+++....+.. .+ +.-..+..++++.+|.||-
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~ViH 83 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGVFH 83 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEEEE
Confidence 346899997 5999999999999999999999888765543221 01 1111234556667887776
Q ss_pred eC
Q 018506 108 ML 109 (355)
Q Consensus 108 ~v 109 (355)
+.
T Consensus 84 ~A 85 (351)
T PLN02650 84 VA 85 (351)
T ss_pred eC
Confidence 64
|
|
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.078 Score=51.05 Aligned_cols=35 Identities=29% Similarity=0.427 Sum_probs=30.0
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCCh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNC 78 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~ 78 (355)
...||.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 37 ~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ 72 (390)
T PRK07411 37 KAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDV 72 (390)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 34689999999999999999999996 578887653
|
|
| >PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.045 Score=52.55 Aligned_cols=34 Identities=24% Similarity=0.242 Sum_probs=31.3
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCCh
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 78 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~ 78 (355)
..+|.|||.|..|.++|..|++.|++|+++++.+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 3589999999999999999999999999999764
|
|
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.081 Score=47.30 Aligned_cols=41 Identities=20% Similarity=0.298 Sum_probs=35.9
Q ss_pred ceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 46 ESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 46 mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
++|-|.|+ |.+|..+++.|++.|++|++.+|++++.+.+.+
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~~~ 44 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARMNS 44 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHHHh
Confidence 36889988 999999999999999999999999888766544
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.12 Score=49.01 Aligned_cols=46 Identities=17% Similarity=0.244 Sum_probs=38.5
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeC---ChhHHHHHHhCCCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDV---NCNVMKMFSDMGVP 90 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr---~~~~~~~l~~~g~~ 90 (355)
-.+|.|+|+|.+|...++.+...|.+|++++| ++++.+.+.+.|+.
T Consensus 173 g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~ 221 (355)
T cd08230 173 PRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGAT 221 (355)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Confidence 35799999999999999998889999999998 67787777666654
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.075 Score=49.49 Aligned_cols=66 Identities=23% Similarity=0.197 Sum_probs=54.9
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCc
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~ 112 (355)
.++-|.|.|..|..+|.+|...|-.|.|+..+|-++-+..=.|..+. ..+|++..+|++|.++-+-
T Consensus 210 K~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~-~m~~Aa~~gDifiT~TGnk 275 (420)
T COG0499 210 KNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAKTGDIFVTATGNK 275 (420)
T ss_pred ceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEE-EhHHhhhcCCEEEEccCCc
Confidence 45777799999999999999999999999998877655554676655 5788899999999998654
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.24 Score=45.68 Aligned_cols=44 Identities=20% Similarity=0.238 Sum_probs=36.5
Q ss_pred CCCceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 43 CQFESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 43 ~~~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
....+|-|.| .|.+|..+++.|++.|++|++.+|++++++.+.+
T Consensus 7 l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~ 51 (296)
T PRK05872 7 LAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAA 51 (296)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 3445677776 5899999999999999999999999988776654
|
|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.11 Score=47.28 Aligned_cols=37 Identities=19% Similarity=0.317 Sum_probs=31.7
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCC-CcEEEEeCChh
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCN 79 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G-~~V~v~dr~~~ 79 (355)
....+|.|+|+|.+|+.++..|++.| .+++++|.+.-
T Consensus 28 L~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V 65 (268)
T PRK15116 28 FADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDV 65 (268)
T ss_pred hcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence 34578999999999999999999999 57888887643
|
|
| >PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.092 Score=51.68 Aligned_cols=63 Identities=17% Similarity=0.242 Sum_probs=43.3
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh---CCCCCCCCHHHHhhcCCEEEEe
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD---MGVPTKETPFEVAEASDVVITM 108 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~---~g~~~~~s~~e~~~~aDiVi~~ 108 (355)
...||.|+|+|.-|.+.++.|.+ |.+|+++|.+++....+.+ ... ......+.+.++|+||..
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~vV~S 70 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNA-IAALSDSRWQNLDKIVLS 70 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCce-eccCChhHhhCCCEEEEC
Confidence 34689999999999999999995 9999999965443322222 111 112223445689998887
|
|
| >PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.16 Score=46.46 Aligned_cols=76 Identities=14% Similarity=0.227 Sum_probs=58.0
Q ss_pred CCceEEEEccc-HHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 44 QFESVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~G-~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
.-.++.|||-+ .+|.+++..|.+.|..|++++.. +.++.+.+++||+||.++..+..+..
T Consensus 158 ~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~--------------T~~L~~~~~~ADIvV~AvGkp~~i~~----- 218 (288)
T PRK14171 158 TGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSK--------------THNLSSITSKADIVVAAIGSPLKLTA----- 218 (288)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEccCCCCccCH-----
Confidence 34789999865 57999999999999999998742 24678888999999999987743332
Q ss_pred CccccCCCCCCCeEEEEcCCCC
Q 018506 123 NGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.+++ +|.++||.+.+.
T Consensus 219 -~~vk-----~GavVIDvGin~ 234 (288)
T PRK14171 219 -EYFN-----PESIVIDVGINR 234 (288)
T ss_pred -HHcC-----CCCEEEEeeccc
Confidence 2443 567999987653
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.084 Score=48.10 Aligned_cols=42 Identities=14% Similarity=0.160 Sum_probs=36.0
Q ss_pred ceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC
Q 018506 46 ESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM 87 (355)
Q Consensus 46 mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~ 87 (355)
++|-|.|+ |.+|..+++.|++.|++|++.+|++++.+.+.+.
T Consensus 5 k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~~ 47 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALEAE 47 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHC
Confidence 35777776 9999999999999999999999999888776643
|
|
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.19 Score=45.51 Aligned_cols=41 Identities=17% Similarity=0.260 Sum_probs=34.0
Q ss_pred ceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 46 ESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 46 mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
+++-|.| .|.+|..+++.|++.|++|++.+|+++..+.+.+
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 43 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAA 43 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4566665 5899999999999999999999999887766543
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.17 Score=45.79 Aligned_cols=41 Identities=22% Similarity=0.276 Sum_probs=35.3
Q ss_pred CceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH
Q 018506 45 FESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 85 (355)
Q Consensus 45 ~mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~ 85 (355)
.++|-|.|+ |.+|..+++.|++.|++|.+.+|++++.+.+.
T Consensus 5 ~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 46 (273)
T PRK07825 5 GKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETA 46 (273)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 457888865 99999999999999999999999998876654
|
|
| >PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.17 Score=46.13 Aligned_cols=76 Identities=12% Similarity=0.135 Sum_probs=57.6
Q ss_pred CCceEEEEccc-HHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 44 QFESVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~G-~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
.-.+|.|||-+ .+|.+++..|.+++..|++++.. +.++.+..++||+||.++..+.-+..
T Consensus 156 ~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~--------------T~nl~~~~~~ADIvI~AvGk~~~i~~----- 216 (282)
T PRK14182 156 KGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSR--------------TADLAGEVGRADILVAAIGKAELVKG----- 216 (282)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEecCCcCccCH-----
Confidence 34789999765 58999999999999999998653 23567888999999999987643322
Q ss_pred CccccCCCCCCCeEEEEcCCCC
Q 018506 123 NGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.+++ +|.++||.+...
T Consensus 217 -~~ik-----~gaiVIDvGin~ 232 (282)
T PRK14182 217 -AWVK-----EGAVVIDVGMNR 232 (282)
T ss_pred -HHcC-----CCCEEEEeecee
Confidence 2443 567999987654
|
|
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.24 Score=48.67 Aligned_cols=152 Identities=14% Similarity=0.189 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHcCC--CeEEeCCcch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH----cC--CCHHHHHHHHH
Q 018506 197 EDAYQAAKPLFLSMGK--NTIYCGGAGN-----GAAAKICNNLTMAVSMLGVSEALTLGQS----LG--ISASTLTKILN 263 (355)
Q Consensus 197 ~~~~~~v~~ll~~~g~--~~~~~g~~g~-----a~~~Kl~~n~~~~~~~~~~~Ea~~la~~----~G--i~~~~~~~~~~ 263 (355)
.+++.++.+.++.... ...+.|+.+. ++..|.+.|.+.+..+.+++|.+.+.++ +| +|..++.++.+
T Consensus 271 ~AvfaR~~S~~k~~r~~~~~~~~g~~~~~~~~~~~~i~~v~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr 350 (459)
T PRK09287 271 EAVFARYLSSLKDQRVAASKVLSGPAAKFEGDKAEFIEDVRQALYASKIVSYAQGFALLRAASEEYGWDLDLGEIARIWR 350 (459)
T ss_pred HHHHHHhccccHHHHHHhhcccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhC
Confidence 3444455554444321 1234454433 7899999999999999999999999766 44 78999999999
Q ss_pred hcC-CCcccccCCCCCCCcccCCC--CCCCCCCCcc--hhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCC
Q 018506 264 SSS-ARCWSSDSYNPVPGVMEGVP--ASRNYGGGFA--SKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDS 338 (355)
Q Consensus 264 ~~~-~~s~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g~g~ 338 (355)
.|+ -.+|..+... ..++..+ .+--+.+.|. +......++.++..+-+.|+|+|.+.+++..|..-.....+.
T Consensus 351 ~GcIIRs~lL~~i~---~a~~~~~~l~nl~~~~~~~~~i~~~~~~~R~vV~~a~~~gip~P~ls~aL~y~d~~~~~~~~a 427 (459)
T PRK09287 351 GGCIIRAQFLQKIT---DAYEANPDLANLLLDPYFKDILEEYQDALRRVVALAVQAGIPVPAFSSALSYYDSYRTARLPA 427 (459)
T ss_pred CCCEEeHHHHHHHH---HHHHhCCCchhhcCCHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccH
Confidence 887 3555433111 1111101 0001112221 223344557889999999999999999996666554443332
Q ss_pred CcHHHHHHHHhcCC
Q 018506 339 KDFSCVFQHYYGGK 352 (355)
Q Consensus 339 ~d~~~~~~~~~~~~ 352 (355)
-.-...|-+|++|
T Consensus 428 -nliqaqRd~FGaH 440 (459)
T PRK09287 428 -NLIQAQRDYFGAH 440 (459)
T ss_pred -HHHHHHHhHhCCC
Confidence 3333334455554
|
|
| >KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.047 Score=53.32 Aligned_cols=36 Identities=25% Similarity=0.436 Sum_probs=32.8
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
..++++|||+|.-|.+.|+.|.+.|++|+++.|+.+
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~ 40 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDD 40 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCC
Confidence 457899999999999999999999999999988754
|
|
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.081 Score=46.59 Aligned_cols=41 Identities=15% Similarity=0.201 Sum_probs=35.6
Q ss_pred ceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 46 ESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 46 mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
||+-|.|+ |.+|..+++.|++.|++|++.+|++++++.+.+
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~ 42 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAK 42 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 57888865 899999999999999999999999888766543
|
|
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.087 Score=50.78 Aligned_cols=35 Identities=23% Similarity=0.329 Sum_probs=30.6
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCCh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNC 78 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~ 78 (355)
...||.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 41 ~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ 76 (392)
T PRK07878 41 KNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDV 76 (392)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 44689999999999999999999997 588888654
|
|
| >PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.047 Score=52.38 Aligned_cols=35 Identities=23% Similarity=0.228 Sum_probs=31.9
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHC---CCcEEEEeCC
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKA---GYKMAVHDVN 77 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~---G~~V~v~dr~ 77 (355)
|++++|.|||+|..|.++|..|+++ |++|+++++.
T Consensus 1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 1 MSRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CCcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 3557899999999999999999998 9999999984
|
|
| >PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.46 Score=46.48 Aligned_cols=64 Identities=20% Similarity=0.208 Sum_probs=45.5
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhH--HHHHHhCCCCCC--CCHHHHhhcCCEEEEeC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNV--MKMFSDMGVPTK--ETPFEVAEASDVVITML 109 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~--~~~l~~~g~~~~--~s~~e~~~~aDiVi~~v 109 (355)
..+|.|||.|..|.+.++.|.+.|++|+++|..+.. .+.+. .|+... ....+.+++.|+||..-
T Consensus 6 ~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~-~g~~~~~~~~~~~~~~~~d~vv~sp 73 (438)
T PRK03806 6 GKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLP-ENVERHTGSLNDEWLLAADLIVASP 73 (438)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHh-cCCEEEeCCCCHHHhcCCCEEEECC
Confidence 357999999999999999999999999999965432 23343 254432 12334456789877663
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.15 Score=45.51 Aligned_cols=40 Identities=23% Similarity=0.325 Sum_probs=34.9
Q ss_pred ceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH
Q 018506 46 ESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 85 (355)
Q Consensus 46 mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~ 85 (355)
++|-|.| .|.+|..+++.|++.|++|.+.+|++++.+.+.
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~ 45 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAA 45 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 5688887 699999999999999999999999988766543
|
|
| >PRK08013 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.049 Score=52.57 Aligned_cols=34 Identities=26% Similarity=0.374 Sum_probs=31.9
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
.+|.|||+|..|.++|..|++.|++|+++++.+.
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 5799999999999999999999999999998765
|
|
| >cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.089 Score=48.34 Aligned_cols=32 Identities=25% Similarity=0.420 Sum_probs=28.1
Q ss_pred eEEEEcccHHhHHHHHHHHHCCC-cEEEEeCCh
Q 018506 47 SVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNC 78 (355)
Q Consensus 47 kIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~ 78 (355)
||.|||+|.+|+.+++.|+..|. +++++|.+.
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~ 33 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGK 33 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 68999999999999999999996 588887653
|
This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole. |
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.14 Score=44.73 Aligned_cols=40 Identities=10% Similarity=0.117 Sum_probs=33.8
Q ss_pred CceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH
Q 018506 45 FESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 85 (355)
Q Consensus 45 ~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~ 85 (355)
+++|-|.| .|.+|..++..|+++ ++|++.+|+++..+.+.
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~~~~~~ 43 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT-HTLLLGGRPAERLDELA 43 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHHHHHHH
Confidence 46788886 599999999999999 99999999987765554
|
|
| >PLN00093 geranylgeranyl diphosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.078 Score=52.10 Aligned_cols=37 Identities=24% Similarity=0.235 Sum_probs=33.1
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
..++.|.|||+|.-|++.|..|+++|++|.++++.+.
T Consensus 37 ~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~ 73 (450)
T PLN00093 37 GRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLD 73 (450)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 3456899999999999999999999999999998754
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.096 Score=46.52 Aligned_cols=41 Identities=17% Similarity=0.125 Sum_probs=34.6
Q ss_pred CCceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHH
Q 018506 44 QFESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMF 84 (355)
Q Consensus 44 ~~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l 84 (355)
+.++|.|.| .|.+|..+++.|+++|++|++.+|++++...+
T Consensus 5 ~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~ 46 (251)
T PRK12826 5 EGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAAT 46 (251)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 346788887 79999999999999999999999997665443
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.26 Score=43.26 Aligned_cols=69 Identities=20% Similarity=0.167 Sum_probs=46.2
Q ss_pred CCceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcC
Q 018506 44 QFESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 121 (355)
Q Consensus 44 ~~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~ 121 (355)
+.++|-|.| .|.+|..+++.|++.|++|++.+|++++..+..+. .. .....++..-+.+..+++.++..
T Consensus 6 ~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~-~~--------~~~~~~~~~D~~~~~~~~~~~~~ 75 (239)
T PRK12828 6 QGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPG-VP--------ADALRIGGIDLVDPQAARRAVDE 75 (239)
T ss_pred CCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHH-Hh--------hcCceEEEeecCCHHHHHHHHHH
Confidence 346788886 59999999999999999999999988765443221 00 01233444445555666665554
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.089 Score=46.97 Aligned_cols=41 Identities=15% Similarity=0.199 Sum_probs=35.6
Q ss_pred ceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 46 ESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 46 mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
|+|-|+| .|.+|..+++.|.+.|++|++.+|++++++.+.+
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 42 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKD 42 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 6788887 5999999999999999999999999887766543
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.21 Score=47.03 Aligned_cols=46 Identities=20% Similarity=0.320 Sum_probs=39.5
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHhCCCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVP 90 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~ 90 (355)
..+|.|+|+|.+|...++.+...|. .|++.++++++.+.+.+.|+.
T Consensus 170 g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~ 216 (343)
T PRK09880 170 GKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGAD 216 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCc
Confidence 3579999999999999998888897 588899999998888777654
|
|
| >TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.081 Score=48.26 Aligned_cols=56 Identities=16% Similarity=0.199 Sum_probs=40.0
Q ss_pred eEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcC--CEEEEeCC
Q 018506 47 SVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEAS--DVVITMLP 110 (355)
Q Consensus 47 kIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~a--DiVi~~v~ 110 (355)
||.|+|. |.+|+.+++.|.+.||+|++++|+.. .+.-..+..+++++. |+||-+..
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~~~--------d~~~~~~~~~~~~~~~~d~vi~~a~ 59 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRVVVALTSSQL--------DLTDPEALERLLRAIRPDAVVNTAA 59 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCccc--------CCCCHHHHHHHHHhCCCCEEEECCc
Confidence 5889984 99999999999999999999988511 111122344445544 88887753
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc. |
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.16 Score=45.18 Aligned_cols=38 Identities=24% Similarity=0.450 Sum_probs=31.1
Q ss_pred eEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHH
Q 018506 47 SVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMF 84 (355)
Q Consensus 47 kIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l 84 (355)
||.|||+|.+|+.+++.|+..|. +++++|.+.=....+
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNL 39 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNL 39 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhh
Confidence 68999999999999999999997 588888765433333
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.22 Score=44.77 Aligned_cols=41 Identities=12% Similarity=0.250 Sum_probs=34.5
Q ss_pred ceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 46 ESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 46 mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
+++-|.| .|.+|..+++.|++.|++|++.+|++++.+.+.+
T Consensus 7 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 48 (263)
T PRK06200 7 QVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQ 48 (263)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4566665 5789999999999999999999999888776654
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.13 Score=47.62 Aligned_cols=64 Identities=17% Similarity=0.200 Sum_probs=52.6
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPS 111 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~ 111 (355)
..+|+|||.-.=-..+++.|.+.|++|.++.-+.+. ....|+...++.+++++++|+|+..+|.
T Consensus 2 ~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~---~~~~g~~~~~~~~~~~~~ad~ii~~~p~ 65 (296)
T PRK08306 2 GKHIAVIGGDARQLELIRKLVELGAKVSLVGFDQLD---HGFTGATKSSSLEEALSDVDVIILPVPG 65 (296)
T ss_pred CcEEEEEcCcHHHHHHHHHHHHCCCEEEEEeccccc---cccCCceeeccHHHHhccCCEEEECCcc
Confidence 357999999999999999999999999987653221 1235778888888999999999999874
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.1 Score=46.38 Aligned_cols=41 Identities=12% Similarity=0.242 Sum_probs=35.0
Q ss_pred CceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH
Q 018506 45 FESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 85 (355)
Q Consensus 45 ~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~ 85 (355)
|++|-|.| .|.+|..+++.|+++|++|++.+|++++.+.+.
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~ 42 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAGARLYLAARDVERLERLA 42 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHH
Confidence 45788886 799999999999999999999999988765543
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.13 Score=45.65 Aligned_cols=43 Identities=19% Similarity=0.215 Sum_probs=36.8
Q ss_pred CCceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 44 QFESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 44 ~~mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
+.+++.|.|. |.+|..++..|++.|++|++.+|++++.+.+.+
T Consensus 8 ~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~ 51 (245)
T PRK07060 8 SGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAG 51 (245)
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 3467889987 899999999999999999999999887766543
|
|
| >cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3 | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.11 Score=47.70 Aligned_cols=31 Identities=29% Similarity=0.603 Sum_probs=27.1
Q ss_pred eEEEEcccHHhHHHHHHHHHCCC-cEEEEeCC
Q 018506 47 SVGFIGLGNMGFRMASNLMKAGY-KMAVHDVN 77 (355)
Q Consensus 47 kIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~ 77 (355)
||.|||+|.+|+.++++|+..|. +++++|.+
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D 32 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMD 32 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 68999999999999999999996 47777654
|
UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.2 Score=44.82 Aligned_cols=40 Identities=18% Similarity=0.307 Sum_probs=34.0
Q ss_pred ceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH
Q 018506 46 ESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 85 (355)
Q Consensus 46 mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~ 85 (355)
+++-|.|. |.+|..+++.|++.|++|.+.+|++++.+.+.
T Consensus 10 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 50 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLA 50 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 45677765 89999999999999999999999988776654
|
|
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.12 Score=45.68 Aligned_cols=43 Identities=12% Similarity=0.126 Sum_probs=35.7
Q ss_pred CCCCceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHH
Q 018506 42 SCQFESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMF 84 (355)
Q Consensus 42 ~~~~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l 84 (355)
.++.++|-|.| .|.+|..+++.|++.|++|++++|++++.+.+
T Consensus 3 ~l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~ 46 (239)
T PRK08703 3 TLSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKV 46 (239)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHH
Confidence 34446788886 59999999999999999999999998876554
|
|
| >PRK07045 putative monooxygenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.063 Score=51.53 Aligned_cols=36 Identities=22% Similarity=0.161 Sum_probs=32.9
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
..++|.|||+|..|...|..|+++|++|+++++.++
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~ 39 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAAR 39 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCc
Confidence 346899999999999999999999999999998764
|
|
| >PRK06475 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.064 Score=51.78 Aligned_cols=34 Identities=21% Similarity=0.279 Sum_probs=31.8
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
.||.|||+|..|.++|..|.++|++|.++++.++
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 6799999999999999999999999999998754
|
|
| >PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.23 Score=45.36 Aligned_cols=76 Identities=16% Similarity=0.286 Sum_probs=57.6
Q ss_pred CCceEEEEccc-HHhHHHHHHHHHC----CCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHH
Q 018506 44 QFESVGFIGLG-NMGFRMASNLMKA----GYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDV 118 (355)
Q Consensus 44 ~~mkIgiIG~G-~mG~~ia~~L~~~----G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~v 118 (355)
.-.++.|||-+ .+|.+++..|.++ +..|++++.. +.++.+.+++||+||.++..+.-+..
T Consensus 152 ~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~--------------T~~l~~~~~~ADIvV~AvG~p~~i~~- 216 (287)
T PRK14181 152 HGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQ--------------SENLTEILKTADIIIAAIGVPLFIKE- 216 (287)
T ss_pred CCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEccCCcCccCH-
Confidence 34789999865 5799999999988 6789988642 23678888999999999987743322
Q ss_pred hcCCCccccCCCCCCCeEEEEcCCCC
Q 018506 119 YNGPNGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 119 l~~~~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.+++ +|.+|||.+...
T Consensus 217 -----~~ik-----~GavVIDvGin~ 232 (287)
T PRK14181 217 -----EMIA-----EKAVIVDVGTSR 232 (287)
T ss_pred -----HHcC-----CCCEEEEecccc
Confidence 2443 567999987654
|
|
| >PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.059 Score=51.53 Aligned_cols=34 Identities=18% Similarity=0.337 Sum_probs=31.3
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCCh
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 78 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~ 78 (355)
|.+|.|||.|..|.++|..|++.|++|+++++.+
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~ 34 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQKGIKTTIFESKS 34 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHcCCCeEEEecCCC
Confidence 4679999999999999999999999999999763
|
|
| >PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.068 Score=50.00 Aligned_cols=31 Identities=26% Similarity=0.393 Sum_probs=29.6
Q ss_pred eEEEEcccHHhHHHHHHHHHCCCcEEEEeCC
Q 018506 47 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVN 77 (355)
Q Consensus 47 kIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~ 77 (355)
.|.|||.|..|..+|..|++.|++|++++++
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeec
Confidence 4899999999999999999999999999987
|
1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A .... |
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.18 Score=46.70 Aligned_cols=81 Identities=19% Similarity=0.211 Sum_probs=51.0
Q ss_pred ceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCCc
Q 018506 46 ESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNG 124 (355)
Q Consensus 46 mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~~ 124 (355)
.||+|+| .|..|.-+.+.|..+. ++.+.....+.. .. ..+.+++++++|++|+|+|... ..+....
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP-~~el~~l~s~~~-------~~-~~~~~~~~~~~D~vFlalp~~~-s~~~~~~--- 68 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRD-DIELLSIAPDRR-------KD-AAERAKLLNAADVAILCLPDDA-AREAVSL--- 68 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCC-CeEEEEEecccc-------cC-cCCHhHhhcCCCEEEECCCHHH-HHHHHHH---
Confidence 4899995 6999999999999864 333332221110 11 1245566678999999999863 3333322
Q ss_pred cccCCCCCCCeEEEEcCCCC
Q 018506 125 LLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 125 ~l~~~~~~~~~ivi~~st~~ 144 (355)
+.+ .+..|||.|+..
T Consensus 69 ~~~-----~g~~VIDlSadf 83 (310)
T TIGR01851 69 VDN-----PNTCIIDASTAY 83 (310)
T ss_pred HHh-----CCCEEEECChHH
Confidence 211 456899998743
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.062 Score=51.50 Aligned_cols=34 Identities=26% Similarity=0.339 Sum_probs=31.4
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
.+|.|||.|..|.++|..|+++|++|+++++++.
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~ 41 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAGASVALVAPEPP 41 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence 5699999999999999999999999999998753
|
|
| >KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.25 Score=45.38 Aligned_cols=52 Identities=23% Similarity=0.389 Sum_probs=45.3
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHhCCCCCCCCHHH
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVPTKETPFE 97 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~~~s~~e 97 (355)
.+++|+|+|.+|.+.+..-..+|- +++.+|.|+++.+..++.|++-.-++.|
T Consensus 194 stvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~d 246 (375)
T KOG0022|consen 194 STVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFINPKD 246 (375)
T ss_pred CEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecChhh
Confidence 679999999999999999988885 6999999999999999888876655553
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.14 Score=45.58 Aligned_cols=41 Identities=22% Similarity=0.290 Sum_probs=34.7
Q ss_pred CCceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHH
Q 018506 44 QFESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMF 84 (355)
Q Consensus 44 ~~mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l 84 (355)
+.+++-|.|. |.+|..+++.|++.|++|++.+|+++..+.+
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~ 46 (250)
T PRK07774 5 DDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERV 46 (250)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 3467888876 9999999999999999999999987765544
|
|
| >TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.071 Score=51.35 Aligned_cols=34 Identities=26% Similarity=0.405 Sum_probs=31.9
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
.+|.|||+|..|.+.|..|+++|++|+++++.+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 5799999999999999999999999999998764
|
Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway. |
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.28 Score=43.87 Aligned_cols=43 Identities=21% Similarity=0.247 Sum_probs=35.2
Q ss_pred CCCceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH
Q 018506 43 CQFESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 85 (355)
Q Consensus 43 ~~~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~ 85 (355)
.+.++|-|.| .|.+|..+++.|++.|++|++++|+++..+.+.
T Consensus 9 ~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 52 (256)
T PRK06124 9 LAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAV 52 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHH
Confidence 3446677775 589999999999999999999999987765543
|
|
| >PTZ00383 malate:quinone oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.1 Score=51.80 Aligned_cols=34 Identities=24% Similarity=0.199 Sum_probs=29.7
Q ss_pred CceEEEEcccHHhHHHHHHHHHCC--CcEEEEeCCh
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAG--YKMAVHDVNC 78 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G--~~V~v~dr~~ 78 (355)
...|.|||.|.||.++|..|++.+ .+|+++++..
T Consensus 45 ~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~ 80 (497)
T PTZ00383 45 VYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRS 80 (497)
T ss_pred cccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCc
Confidence 457999999999999999999963 5899999864
|
|
| >PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.24 Score=45.59 Aligned_cols=76 Identities=12% Similarity=0.119 Sum_probs=56.9
Q ss_pred CCceEEEEcc-cHHhHHHHHHHHHC----CCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHH
Q 018506 44 QFESVGFIGL-GNMGFRMASNLMKA----GYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDV 118 (355)
Q Consensus 44 ~~mkIgiIG~-G~mG~~ia~~L~~~----G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~v 118 (355)
.-.+|.|||- ..+|.+++..|.+. +..|++++.. +.++.+.+++||+||.++..+.-+..
T Consensus 160 ~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~--------------T~~l~~~~~~ADIvVsAvGkp~~i~~- 224 (297)
T PRK14168 160 SGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTR--------------SKNLARHCQRADILIVAAGVPNLVKP- 224 (297)
T ss_pred CCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCC--------------CcCHHHHHhhCCEEEEecCCcCccCH-
Confidence 3478999975 56899999999988 6789988643 24677888999999999977643222
Q ss_pred hcCCCccccCCCCCCCeEEEEcCCCC
Q 018506 119 YNGPNGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 119 l~~~~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.+++ +|.+|||.+...
T Consensus 225 -----~~ik-----~gavVIDvGin~ 240 (297)
T PRK14168 225 -----EWIK-----PGATVIDVGVNR 240 (297)
T ss_pred -----HHcC-----CCCEEEecCCCc
Confidence 2443 567999987654
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.15 Score=45.71 Aligned_cols=43 Identities=21% Similarity=0.275 Sum_probs=35.6
Q ss_pred CCCceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH
Q 018506 43 CQFESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 85 (355)
Q Consensus 43 ~~~mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~ 85 (355)
++.++|-|.|. |.+|..++..|++.|++|.+.+|++++.+++.
T Consensus 5 ~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 48 (262)
T PRK13394 5 LNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVA 48 (262)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHH
Confidence 34456777766 99999999999999999999999987766554
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.15 Score=45.68 Aligned_cols=43 Identities=19% Similarity=0.172 Sum_probs=36.4
Q ss_pred CCCceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH
Q 018506 43 CQFESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 85 (355)
Q Consensus 43 ~~~mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~ 85 (355)
++.++|-|+|+ |.+|..+++.|++.|++|++.+|++.+.+.+.
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~ 48 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAA 48 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 34467888977 99999999999999999999999887766554
|
|
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.36 Score=44.92 Aligned_cols=42 Identities=14% Similarity=0.063 Sum_probs=33.5
Q ss_pred CCceEEEE-cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH
Q 018506 44 QFESVGFI-GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 85 (355)
Q Consensus 44 ~~mkIgiI-G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~ 85 (355)
+.+++-|. |.+.+|..+++.|++.|++|++.+|+.++.++..
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~ 55 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAV 55 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 33445555 5788999999999999999999999988766543
|
|
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.2 Score=46.74 Aligned_cols=37 Identities=16% Similarity=0.126 Sum_probs=31.8
Q ss_pred CceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHH
Q 018506 45 FESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVM 81 (355)
Q Consensus 45 ~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~ 81 (355)
.++|-|.| .|.+|+.++..|++.||+|++..|+++..
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~ 42 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDR 42 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcch
Confidence 46788887 59999999999999999999888876643
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.24 Score=44.24 Aligned_cols=40 Identities=15% Similarity=0.149 Sum_probs=33.7
Q ss_pred ceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH
Q 018506 46 ESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 85 (355)
Q Consensus 46 mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~ 85 (355)
+++-|.| .|.+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 7 k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~ 47 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLV 47 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 4566675 589999999999999999999999988776654
|
|
| >PLN02852 ferredoxin-NADP+ reductase | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.099 Score=51.78 Aligned_cols=38 Identities=24% Similarity=0.349 Sum_probs=33.2
Q ss_pred CCCCceEEEEcccHHhHHHHHHHHH--CCCcEEEEeCChh
Q 018506 42 SCQFESVGFIGLGNMGFRMASNLMK--AGYKMAVHDVNCN 79 (355)
Q Consensus 42 ~~~~mkIgiIG~G~mG~~ia~~L~~--~G~~V~v~dr~~~ 79 (355)
.....||+|||.|.-|..-|..|++ .||+|++|++.+.
T Consensus 23 ~~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~ 62 (491)
T PLN02852 23 TSEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPT 62 (491)
T ss_pred CCCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCC
Confidence 3445789999999999999999987 7999999998764
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.19 Score=45.53 Aligned_cols=42 Identities=19% Similarity=0.167 Sum_probs=35.5
Q ss_pred CCceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH
Q 018506 44 QFESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 85 (355)
Q Consensus 44 ~~mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~ 85 (355)
..++|-|.|. |.+|..+++.|++.|++|++++|++++.+.+.
T Consensus 6 ~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 48 (276)
T PRK05875 6 QDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAA 48 (276)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 3467888885 89999999999999999999999987765543
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.21 Score=44.59 Aligned_cols=41 Identities=15% Similarity=0.131 Sum_probs=34.6
Q ss_pred CceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH
Q 018506 45 FESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 85 (355)
Q Consensus 45 ~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~ 85 (355)
.++|-|.| .|.+|..+++.|++.|++|++.+|+++..+.+.
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 46 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVA 46 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 36677775 589999999999999999999999987765543
|
|
| >KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.12 Score=48.30 Aligned_cols=182 Identities=15% Similarity=0.108 Sum_probs=91.1
Q ss_pred HhHHHHHHHHHCCCcEEEEeCChhHHHH----HHhC-------C----C-------CCCC-CHHHHhhcCCEEEEeCCCc
Q 018506 56 MGFRMASNLMKAGYKMAVHDVNCNVMKM----FSDM-------G----V-------PTKE-TPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 56 mG~~ia~~L~~~G~~V~v~dr~~~~~~~----l~~~-------g----~-------~~~~-s~~e~~~~aDiVi~~v~~~ 112 (355)
||..||..+..+|++++..+.+..-++. +... + . .... ....-++++|.|+-++..+
T Consensus 1 MG~gia~~~~~~~i~~vl~~~n~~~~~~~~~~v~a~l~~~~~~~~~~~~~~~~~~~~L~~~~Dy~~~~~~dmvieav~ed 80 (380)
T KOG1683|consen 1 MGAGIAIVFILAGIRTVLVDANVALLARGILQLAAHLNSEVKRGRLSGLEREKTKSNLVETLDYTGFANADMVIEAVFED 80 (380)
T ss_pred CcchHHHHHHHcCCcEEEEeccHHHHHHhHHHHHHhhhHHHhhccccccchhhhhhhcccccccccccccceeccchhhh
Confidence 8999999999999999999998654331 1110 0 0 0111 1122456899998888766
Q ss_pred hHHH-HHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEE
Q 018506 113 SHVL-DVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTF 191 (355)
Q Consensus 113 ~~~~-~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~ 191 (355)
-.++ +++..++.+.+. +.-.=.++|+..+.. +.+.+... .... +.||.++...-.........-+
T Consensus 81 l~Lk~~l~~~le~v~~~----~~i~gsntSs~~~~~---isa~ld~~--e~vv----g~h~fspa~~m~LlEii~~~~t- 146 (380)
T KOG1683|consen 81 LELKHELFKSLEKVEPP----KCIRGSNTSSLDINV---ISAGLDRP--EMVV----GMHFFSPAHWMQLLEIILALYT- 146 (380)
T ss_pred HHHHHHHHHHHHhhcCC----cceeeeccccCChHH---HhhccCch--hhhc----cccccCHHHHHHHHHHHHhcCC-
Confidence 5555 455554444421 211233445544443 33322110 0111 2455543322222222211111
Q ss_pred EecCCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 018506 192 MVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILN 263 (355)
Q Consensus 192 ~~gg~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~ 263 (355)
+......+-+.-...++-++.+|+ ..+..+ |.+. -..+.++..+....|+++..+..+..
T Consensus 147 ----S~~~iA~Ain~~~~~gk~~vvVg~-c~gf~v----~r~l---~~y~~~~~~~l~e~g~~p~~iD~~~t 206 (380)
T KOG1683|consen 147 ----SKLTIATAINGGSPAGKLPVVVGN-CCGFRV----NRLL---PPYTIGLNELLLEIGADPWLIDSLIT 206 (380)
T ss_pred ----CchHHHHHHhcccccCCccEEecc-CCceEE----Eecc---cHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 444555555666666776666666 122111 1111 12234555666666777766666554
|
|
| >PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.22 Score=46.76 Aligned_cols=76 Identities=16% Similarity=0.236 Sum_probs=58.3
Q ss_pred CCceEEEEccc-HHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 44 QFESVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~G-~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
.-.+|.|||-+ .+|.+++..|.+++..|++++.. +.++.+.+++|||||.++..+.-+..
T Consensus 230 ~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~--------------T~nl~~~~r~ADIVIsAvGkp~~i~~----- 290 (364)
T PLN02616 230 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR--------------TKNPEEITREADIIISAVGQPNMVRG----- 290 (364)
T ss_pred CCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCC--------------CCCHHHHHhhCCEEEEcCCCcCcCCH-----
Confidence 44789999755 58999999999999999998643 24677888999999999987744332
Q ss_pred CccccCCCCCCCeEEEEcCCCC
Q 018506 123 NGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.+++ +|.+|||...+.
T Consensus 291 -d~vK-----~GAvVIDVGIn~ 306 (364)
T PLN02616 291 -SWIK-----PGAVVIDVGINP 306 (364)
T ss_pred -HHcC-----CCCEEEeccccc
Confidence 2443 567999987654
|
|
| >PRK12320 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.087 Score=54.27 Aligned_cols=62 Identities=21% Similarity=0.218 Sum_probs=45.1
Q ss_pred ceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCC-----CC-CCHHHHhhcCCEEEEeCC
Q 018506 46 ESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-----TK-ETPFEVAEASDVVITMLP 110 (355)
Q Consensus 46 mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~-----~~-~s~~e~~~~aDiVi~~v~ 110 (355)
|||.|.| +|.+|+.++..|.+.||+|++.+|++.... ..++. .. ....+++..+|+||-+.+
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~~Vi~ldr~~~~~~---~~~ve~v~~Dl~d~~l~~al~~~D~VIHLAa 69 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGHTVSGIAQHPHDAL---DPRVDYVCASLRNPVLQELAGEADAVIHLAP 69 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEeCChhhcc---cCCceEEEccCCCHHHHHHhcCCCEEEEcCc
Confidence 6899998 799999999999999999999998754321 11111 11 123455668999998875
|
|
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.072 Score=48.55 Aligned_cols=62 Identities=19% Similarity=0.156 Sum_probs=42.2
Q ss_pred EEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCC--CCCCHHHHhhcCCEEEEeCC
Q 018506 49 GFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP--TKETPFEVAEASDVVITMLP 110 (355)
Q Consensus 49 giIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~--~~~s~~e~~~~aDiVi~~v~ 110 (355)
-|.| +|.+|+.+++.|.+.|++|++.+|+++..+.....+.. ......+.+.++|+||-+..
T Consensus 2 lVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vvh~a~ 66 (292)
T TIGR01777 2 LITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTKWEGYKPWAPLAESEALEGADAVINLAG 66 (292)
T ss_pred EEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCcccceeeecccccchhhhcCCCCEEEECCC
Confidence 4565 69999999999999999999999988765432211111 01233445567888877764
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.078 Score=50.61 Aligned_cols=35 Identities=26% Similarity=0.253 Sum_probs=32.3
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCCh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 78 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~ 78 (355)
.+++|.|||.|.+|.+.|..|++.|++|+++++.+
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~ 37 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGE 37 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCc
Confidence 45789999999999999999999999999999765
|
|
| >PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.12 Score=51.06 Aligned_cols=65 Identities=18% Similarity=0.075 Sum_probs=45.4
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh-H---HHHHHhCCCCC-CCCHHHHhhcCCEEEEeC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN-V---MKMFSDMGVPT-KETPFEVAEASDVVITML 109 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~-~---~~~l~~~g~~~-~~s~~e~~~~aDiVi~~v 109 (355)
..||+|+|+|.-|.+.++.|.+.|.+|+++|.++. . ..++.+.+... .....+.+.++|+||.+-
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~Sp 77 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSP 77 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECC
Confidence 35899999999999999999999999999995322 2 22344322111 122235567899999873
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.16 Score=45.92 Aligned_cols=43 Identities=14% Similarity=0.299 Sum_probs=36.9
Q ss_pred CCceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 44 QFESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 44 ~~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
.++++-|-| .+.+|..+|+.|+++||+|+++.|+.++++++++
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~ 48 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAK 48 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHH
Confidence 444566665 5899999999999999999999999999998875
|
|
| >PLN02948 phosphoribosylaminoimidazole carboxylase | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.18 Score=51.18 Aligned_cols=68 Identities=21% Similarity=0.218 Sum_probs=48.3
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhH-HHHHHhCCCC-CCCC---HHHHhhcCCEEEEeCC
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNV-MKMFSDMGVP-TKET---PFEVAEASDVVITMLP 110 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~-~~~l~~~g~~-~~~s---~~e~~~~aDiVi~~v~ 110 (355)
+.++||||||.|..|..++....+.|++|.++|.+++. ...+.+..+. ...+ +.++++.+|+|.....
T Consensus 20 ~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~e 92 (577)
T PLN02948 20 VSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEIE 92 (577)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEecC
Confidence 56689999999999999999999999999999987652 2222222111 1233 3445678998876643
|
|
| >PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes [] | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.067 Score=53.64 Aligned_cols=34 Identities=26% Similarity=0.502 Sum_probs=28.4
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
.||+|||+|.-|.+.++.|.+.|+++++++++++
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~ 35 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDD 35 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSS
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCC
Confidence 5899999999999999999999999999998765
|
Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A .... |
| >PRK09126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.075 Score=50.97 Aligned_cols=35 Identities=20% Similarity=0.357 Sum_probs=31.8
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
..+|.|||.|.-|.++|..|+++|++|+++++.+.
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 37 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL 37 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 35699999999999999999999999999998653
|
|
| >PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1 | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.062 Score=49.43 Aligned_cols=56 Identities=23% Similarity=0.293 Sum_probs=38.1
Q ss_pred ceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhh--cCCEEEEeC
Q 018506 46 ESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAE--ASDVVITML 109 (355)
Q Consensus 46 mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~--~aDiVi~~v 109 (355)
|||-|+| .|.+|..+...|.+.|++|+.++|+.- .+.-.....+.++ ..|+||-|.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~~~--------dl~d~~~~~~~~~~~~pd~Vin~a 59 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRSDL--------DLTDPEAVAKLLEAFKPDVVINCA 59 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTTCS---------TTSHHHHHHHHHHH--SEEEE--
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCchhc--------CCCCHHHHHHHHHHhCCCeEeccc
Confidence 8999999 699999999999999999999987611 1111122233333 589999885
|
1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. |
| >PRK08132 FAD-dependent oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.11 Score=52.55 Aligned_cols=36 Identities=22% Similarity=0.366 Sum_probs=32.6
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
...+|.|||+|..|..+|..|.+.|++|+++++.++
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~ 57 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDT 57 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 445799999999999999999999999999998763
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 355 | ||||
| 2gf2_A | 296 | Crystal Structure Of Human Hydroxyisobutyrate Dehyd | 6e-80 | ||
| 2i9p_A | 319 | Crystal Structure Of Human Hydroxyisobutyrate Dehyd | 7e-80 | ||
| 3obb_A | 300 | Crystal Structure Of A Possible 3-Hydroxyisobutyrat | 1e-44 | ||
| 3q3c_A | 299 | Crystal Structure Of A Serine Dehydrogenase From Ps | 1e-44 | ||
| 3cky_A | 301 | Structural And Kinetic Properties Of A Beta-Hydroxy | 1e-38 | ||
| 3pef_A | 287 | Crystal Structure Of Gamma-Hydroxybutyrate Dehydrog | 2e-33 | ||
| 1vpd_A | 299 | X-Ray Crystal Structure Of Tartronate Semialdehyde | 2e-33 | ||
| 1yb4_A | 295 | Crystal Structure Of The Tartronic Semialdehyde Red | 4e-32 | ||
| 3pdu_A | 287 | Crystal Structure Of Gamma-Hydroxybutyrate Dehydrog | 2e-29 | ||
| 1wp4_A | 289 | Structure Of Tt368 Protein From Thermus Thermophilu | 7e-29 | ||
| 2uyy_A | 316 | Structure Of The Cytokine-Like Nuclear Factor N-Pac | 7e-27 | ||
| 2cvz_A | 289 | Structure Of Hydroxyisobutyrate Dehydrogenase From | 3e-26 | ||
| 3doj_A | 310 | Structure Of Glyoxylate Reductase 1 From Arabidopsi | 8e-26 | ||
| 4dll_A | 320 | Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Re | 2e-18 | ||
| 4gbj_A | 297 | Crystal Structure Of Nad-Binding 6-Phosphogluconate | 5e-13 | ||
| 3qha_A | 296 | Crystal Structure Of A Putative Oxidoreductase From | 5e-13 | ||
| 3g0o_A | 303 | Crystal Structure Of 3-Hydroxyisobutyrate Dehydroge | 8e-10 |
| >pdb|2GF2|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate Dehydrogenase Length = 296 | Back alignment and structure |
|
| >pdb|2I9P|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate Dehydrogenase Complexed With Nad+ Length = 319 | Back alignment and structure |
|
| >pdb|3OBB|A Chain A, Crystal Structure Of A Possible 3-Hydroxyisobutyrate Dehydrogenase From Pseudomonas Aeruginosa Pao1 Length = 300 | Back alignment and structure |
|
| >pdb|3Q3C|A Chain A, Crystal Structure Of A Serine Dehydrogenase From Pseudomonas Aeruginosa Pao1 In Complex With Nad Length = 299 | Back alignment and structure |
|
| >pdb|3CKY|A Chain A, Structural And Kinetic Properties Of A Beta-Hydroxyacid Dehydrogenase Involved In Nicotinate Fermentation Length = 301 | Back alignment and structure |
|
| >pdb|3PEF|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase From Geobacter Metallireducens In Complex With Nadp+ Length = 287 | Back alignment and structure |
|
| >pdb|1VPD|A Chain A, X-Ray Crystal Structure Of Tartronate Semialdehyde Reductase [salmonella Typhimurium Lt2] Length = 299 | Back alignment and structure |
|
| >pdb|1YB4|A Chain A, Crystal Structure Of The Tartronic Semialdehyde Reductase From Salmonella Typhimurium Lt2 Length = 295 | Back alignment and structure |
|
| >pdb|3PDU|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase From Geobacter Sulfurreducens In Complex With Nadp+ Length = 287 | Back alignment and structure |
|
| >pdb|1WP4|A Chain A, Structure Of Tt368 Protein From Thermus Thermophilus Hb8 Length = 289 | Back alignment and structure |
|
| >pdb|2UYY|A Chain A, Structure Of The Cytokine-Like Nuclear Factor N-Pac Length = 316 | Back alignment and structure |
|
| >pdb|2CVZ|A Chain A, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus Thermophilus Hb8 Length = 289 | Back alignment and structure |
|
| >pdb|3DOJ|A Chain A, Structure Of Glyoxylate Reductase 1 From Arabidopsis (Atglyr1) Length = 310 | Back alignment and structure |
|
| >pdb|4DLL|A Chain A, Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Reductase From Polaromonas Sp. Js666 Length = 320 | Back alignment and structure |
|
| >pdb|4GBJ|A Chain A, Crystal Structure Of Nad-Binding 6-Phosphogluconate Dehydrogenase From Dyadobacter Fermentans Length = 297 | Back alignment and structure |
|
| >pdb|3QHA|A Chain A, Crystal Structure Of A Putative Oxidoreductase From Mycobacterium Avium 104 Length = 296 | Back alignment and structure |
|
| >pdb|3G0O|A Chain A, Crystal Structure Of 3-Hydroxyisobutyrate Dehydrogenase (Ygbj) From Salmonella Typhimurium Length = 303 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 355 | |||
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 1e-143 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 1e-140 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 1e-122 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 1e-117 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 1e-109 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 1e-108 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 1e-106 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 1e-105 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 1e-105 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 2e-98 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 3e-98 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 8e-96 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 3e-87 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 1e-81 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 2e-57 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 1e-52 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 1e-43 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 1e-14 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 9e-13 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 9e-13 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 9e-13 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 4e-12 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 5e-10 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 3e-09 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 3e-09 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 1e-07 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 9e-07 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 2e-06 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 5e-06 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 2e-05 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 3e-05 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 5e-05 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 7e-05 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 1e-04 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-04 |
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* Length = 296 | Back alignment and structure |
|---|
Score = 405 bits (1044), Expect = e-143
Identities = 153/305 (50%), Positives = 195/305 (63%), Gaps = 12/305 (3%)
Query: 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 107
VGFIGLGNMG MA NLMK GY + ++DV + K F D G +P +VAE +D +IT
Sbjct: 3 VGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIIT 62
Query: 108 MLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW 167
MLP+S + ++ Y+G NG+L+ + LLIDSSTIDP S+ ++ +++
Sbjct: 63 MLPTSINAIEAYSGANGILKKVK--KGSLLIDSSTIDPAVSKELAKE-----VEKM---- 111
Query: 168 ENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAK 227
V +DAPVSGGV AA +G LTFMVGG ED + AA+ L MG N +YCG G G AAK
Sbjct: 112 -GAVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAK 170
Query: 228 ICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPA 287
ICNN+ +A+SM+G +EA+ LG LG+ L KILN SS RCWSSD+YNPVPGVM+GVP+
Sbjct: 171 ICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPS 230
Query: 288 SRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQH 347
+ NY GGF + LMAKDL LA SA L S A IY +C G+ KDFS VFQ
Sbjct: 231 ANNYQGGFGTTLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQF 290
Query: 348 YYGGK 352
+
Sbjct: 291 LREEE 295
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} Length = 301 | Back alignment and structure |
|---|
Score = 352 bits (905), Expect = e-122
Identities = 105/302 (34%), Positives = 155/302 (51%), Gaps = 20/302 (6%)
Query: 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 107
+GFIGLG MG MA NL+K G + D+ + G E +VA ASD++ T
Sbjct: 7 IGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIFT 66
Query: 108 MLPSSSHVLDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 166
LP++ V V NGP G+L + +++D S++ P ++ ++ EK
Sbjct: 67 SLPNAGIVETVMNGPGGVLSA---CKAGTVIVDMSSVSPSSTLKMAKV-----AAEK--- 115
Query: 167 WENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAA 226
+DAPVSGG AEAGTLT MVG SE ++ +P+ +GK+ + G G G A
Sbjct: 116 --GIDYVDAPVSGGTKGAEAGTLTIMVGASEAVFEKIQPVLSVIGKDIYHVGDTGAGDAV 173
Query: 227 KICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVP 286
KI NNL + +M ++EAL LG G+ T+ +I+ SS R ++ ++ ME
Sbjct: 174 KIVNNLLLGCNMASLAEALVLGVKCGLKPETMQEIIGKSSGRSYAMEAK------MEKFI 227
Query: 287 ASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 346
S ++ GGFA L KDL LAL + KE V P+T+ A I+ G +D S V +
Sbjct: 228 MSGDFAGGFAMDLQHKDLGLALEAGKEGNVPLPMTAMATQIFEGGRAMGLGREDMSAVIK 287
Query: 347 HY 348
+
Sbjct: 288 VW 289
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} Length = 296 | Back alignment and structure |
|---|
Score = 341 bits (876), Expect = e-117
Identities = 80/294 (27%), Positives = 128/294 (43%), Gaps = 17/294 (5%)
Query: 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 107
+G+IGLGNMG MA+ + + + V+D+ M ++ G ++ +VA A + IT
Sbjct: 18 LGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAAADLIHIT 77
Query: 108 MLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW 167
+L + V +V G + G ++ STI T+ ++ LK +
Sbjct: 78 VLDDA-QVREVVGELAGHAKPG-----TVIAIHSTISDTTAVELARD-----LKAR---- 122
Query: 168 ENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAK 227
+ ++DAPVSGG AA G L MVG + Y+ KP F I+ G G G K
Sbjct: 123 -DIHIVDAPVSGGAAAAARGELATMVGADREVYERIKPAFKHWAAVVIHAGEPGAGTRMK 181
Query: 228 ICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPA 287
+ N+ S EA+ L ++ G+ L +++ + A + + + P
Sbjct: 182 LARNMLTFTSYAAACEAMKLAEAAGLDLQALGRVVRHTDALTGGPGAIMVRDNMKDLEPD 241
Query: 288 SRNY-GGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKD 340
+ Y L KDL+LALA + V VD PL A + A H K+
Sbjct: 242 NFLYQPFLHTRGLGEKDLSLALALGEAVSVDLPLARLAYEGLAAGLGVPHKEKE 295
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 Length = 299 | Back alignment and structure |
|---|
Score = 319 bits (821), Expect = e-109
Identities = 110/302 (36%), Positives = 155/302 (51%), Gaps = 21/302 (6%)
Query: 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 107
VGFIGLG MG M+ NL+KAGY + V D N + G T T +AE DV+IT
Sbjct: 8 VGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIIT 67
Query: 108 MLPSSSHVLDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 166
MLP+S HV +V G NG+++G +P +LID S+I P SR IS A LK K
Sbjct: 68 MLPNSPHVKEVALGENGIIEG---AKPGTVLIDMSSIAPLASREISDA-----LKAK--- 116
Query: 167 WENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAA 226
MLDAPVSGG A GTL+ MVGG + + L +M + ++ G G G
Sbjct: 117 --GVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGDIGAGNVT 174
Query: 227 KICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVP 286
K+ N + +A+++ +SEALTL G++ + + + A D+ P +
Sbjct: 175 KLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAP-------MV 227
Query: 287 ASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 346
RN+ GF L KDL AL ++ VG PLT+ ++ L +GH + D S +
Sbjct: 228 MDRNFKPGFRIDLHIKDLANALDTSHGVGAQLPLTAAVMEMMQALRADGHGNDDHSALAC 287
Query: 347 HY 348
+Y
Sbjct: 288 YY 289
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} Length = 287 | Back alignment and structure |
|---|
Score = 316 bits (811), Expect = e-108
Identities = 92/302 (30%), Positives = 137/302 (45%), Gaps = 21/302 (6%)
Query: 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 107
GFIGLG MG MA NL+KAG + + + + + + +G TP EV E+ V
Sbjct: 4 FGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFA 63
Query: 108 MLPSSSHVLDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 166
ML + +V G +G+L+G + + +D ST+DP TS+ I A + K
Sbjct: 64 MLADPAAAEEVCFGKHGVLEG---IGEGRGYVDMSTVDPATSQRIGVA-----VVAK--- 112
Query: 167 WENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAA 226
L+APVSG AE GTL + G + Y A P F MGK I+ G G GA
Sbjct: 113 --GGRFLEAPVSGSKKPAEDGTLIILAAGDRNLYDEAMPGFEKMGKKIIHLGDVGKGAEM 170
Query: 227 KICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVP 286
K+ N+ M M E L LG+ G++ + ++ + + +
Sbjct: 171 KLVVNMVMGGMMACFCEGLALGEKAGLATDAILDVIGAGAMANPMFALKGG-------LI 223
Query: 287 ASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 346
RN+ F K M KDL LA+A VG ++ A +++ G +DFS +F+
Sbjct: 224 RDRNFAPAFPLKHMQKDLRLAVALGDRVGQPLVASAAANELFKGARAAGFGDEDFSAIFK 283
Query: 347 HY 348
Y
Sbjct: 284 TY 285
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* Length = 289 | Back alignment and structure |
|---|
Score = 312 bits (801), Expect = e-106
Identities = 84/302 (27%), Positives = 136/302 (45%), Gaps = 26/302 (8%)
Query: 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 107
V FIGLG MG+ MA +L + + + ++ + G + P E + V+ T
Sbjct: 4 VAFIGLGAMGYPMAGHLARRFPTLVWNRTFEKALRHQEEFGS--EAVPLERVAEARVIFT 61
Query: 108 MLPSSSHVLDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 166
LP++ V +V L +R +D+++ +P+ SR ++ L+EK
Sbjct: 62 CLPTTREVYEVAEA---LYPY---LREGTYWVDATSGEPEASRRLAER-----LREK--- 107
Query: 167 WENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAA 226
LDAPVSGG AEAGTLT M+GG E+A + +P L+ K ++ G G G A
Sbjct: 108 --GVTYLDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPF-LAYAKKVVHVGPVGAGHAV 164
Query: 227 KICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVP 286
K NN +AV++ E L G+SA +++N+SS R ++++ P
Sbjct: 165 KAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQR------V 218
Query: 287 ASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 346
+R + FA L+ KDL +A+ PL A+++Y D +
Sbjct: 219 LTRAFPKTFALGLLVKDLGIAMGVLDGEKAPSPLLRLAREVYEMAKRELGPDADHVEALR 278
Query: 347 HY 348
Sbjct: 279 LL 280
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} Length = 287 | Back alignment and structure |
|---|
Score = 309 bits (795), Expect = e-105
Identities = 88/302 (29%), Positives = 139/302 (46%), Gaps = 21/302 (6%)
Query: 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 107
GF+GLG MG MA+NL++AG+ + V + N +G +P EV A D+ I
Sbjct: 4 YGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIA 63
Query: 108 MLPSSSHVLDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 166
ML + +V G NG+L+G + + ID ST+D +TS I AA + +
Sbjct: 64 MLADPAAAREVCFGANGVLEG---IGGGRGYIDMSTVDDETSTAIGAA-----VTARGGR 115
Query: 167 WENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAA 226
L+APVSG AE GTL + G + + A P F ++GK ++ G G GA
Sbjct: 116 -----FLEAPVSGTKKPAEDGTLIILAAGDQSLFTDAGPAFAALGKKCLHLGEVGQGARM 170
Query: 227 KICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVP 286
K+ N+ M M + E + LG++ G+ L ++L++ + +
Sbjct: 171 KLVVNMIMGQMMTALGEGMALGRNCGLDGGQLLEVLDAGAMANPMFKGKGQ-------ML 223
Query: 287 ASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 346
S + F K M KDL LA+ +G + A + + + GH +DF+ VF+
Sbjct: 224 LSGEFPTSFPLKHMQKDLRLAVELGDRLGQPLHGAATANESFKRARAAGHADEDFAAVFR 283
Query: 347 HY 348
Sbjct: 284 VL 285
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} Length = 303 | Back alignment and structure |
|---|
Score = 309 bits (793), Expect = e-105
Identities = 80/304 (26%), Positives = 134/304 (44%), Gaps = 23/304 (7%)
Query: 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG-VPTKETPFEVAEASDVVI 106
VG +GLG+MG A + ++AG D+N G + E A D ++
Sbjct: 10 VGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALV 69
Query: 107 TMLPSSSHVLDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEKKD 165
++ +++ V V G +G+ ++P ++ SSTI ++ I+AA L
Sbjct: 70 ILVVNAAQVRQVLFGEDGVAHL---MKPGSAVMVSSTISSADAQEIAAA-----LTAL-- 119
Query: 166 SWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGG-AGNGA 224
N MLDAPVSGG + A G +T M GSE A+ KP+ ++ N G G+
Sbjct: 120 ---NLNMLDAPVSGGAVKAAQGEMTVMASGSEAAFTRLKPVLDAVASNVYRISDTPGAGS 176
Query: 225 AAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEG 284
KI + L V + +EA+ L GI + ++ ++ W + N + V++
Sbjct: 177 TVKIIHQLLAGVHIAAAAEAMALAARAGIPLDVMYDVVTHAAGNSWMFE--NRMQHVVD- 233
Query: 285 VPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCV 344
+Y A + KDL L +AK + PL S A +++ G+ +D S V
Sbjct: 234 ----GDYTPRSAVDIFVKDLGLVADTAKALRFPLPLASTALNMFTSASNAGYGKEDDSAV 289
Query: 345 FQHY 348
+ +
Sbjct: 290 IKIF 293
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} Length = 316 | Back alignment and structure |
|---|
Score = 293 bits (753), Expect = 2e-98
Identities = 84/302 (27%), Positives = 127/302 (42%), Gaps = 21/302 (6%)
Query: 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 107
+GF+GLG MG + SNL+K G+ + V + +F G TP EV D+
Sbjct: 33 IGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFA 92
Query: 108 MLPSSSHVLDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 166
+ D+ GP+G+LQG +RP + +D ST+D T ++ + +
Sbjct: 93 CVSDPKAAKDLVLGPSGVLQG---IRPGKCYVDMSTVDADTVTELAQV-----IVSRGGR 144
Query: 167 WENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAA 226
L+APVSG + G L + G Y+ F +MGK + + G GN A
Sbjct: 145 -----FLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKM 199
Query: 227 KICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVP 286
+ N+ M ++E LTL Q G S TL ILN D +
Sbjct: 200 MLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQ---NI---- 252
Query: 287 ASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 346
N+ F K + KDL LA+A V P+ + A ++Y + D S V++
Sbjct: 253 LQGNFKPDFYLKYIQKDLRLAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYR 312
Query: 347 HY 348
Y
Sbjct: 313 AY 314
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} Length = 310 | Back alignment and structure |
|---|
Score = 292 bits (750), Expect = 3e-98
Identities = 90/302 (29%), Positives = 130/302 (43%), Gaps = 21/302 (6%)
Query: 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 107
VGF+GLG MG M+ NL+K G+K+ V + + + G E+P EV + I
Sbjct: 24 VGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIA 83
Query: 108 MLPSSSHVLDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 166
ML L V G+L+ + + ID ST+D +TS I+ A + K
Sbjct: 84 MLSDPCAALSVVFDKGGVLEQ---ICEGKGYIDMSTVDAETSLKINEA-----ITGKGGR 135
Query: 167 WENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAA 226
++ PVSG AE G L + G + ++ + P F +GK + Y G GNGA
Sbjct: 136 -----FVEGPVSGSKKPAEDGQLIILAAGDKALFEESIPAFDVLGKRSFYLGQVGNGAKM 190
Query: 227 KICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVP 286
K+ N+ M M SE L L G+S+ TL IL+ + P
Sbjct: 191 KLIVNMIMGSMMNAFSEGLVLADKSGLSSDTLLDILDLGAMTNPMFKGKGP-------SM 243
Query: 287 ASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 346
+Y F K KD+ LALA E V P+ + A + + K G DFS V +
Sbjct: 244 NKSSYPPAFPLKHQQKDMRLALALGDENAVSMPVAAAANEAFKKARSLGLGDLDFSAVIE 303
Query: 347 HY 348
Sbjct: 304 AV 305
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} Length = 295 | Back alignment and structure |
|---|
Score = 285 bits (733), Expect = 8e-96
Identities = 94/302 (31%), Positives = 143/302 (47%), Gaps = 22/302 (7%)
Query: 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 107
+GFIGLG MG MA NL +AG+++ V + V +G ET +V E +D++
Sbjct: 6 LGFIGLGIMGSPMAINLARAGHQLHVTTIG-PVADELLSLGAVNVETARQVTEFADIIFI 64
Query: 108 MLPSSSHVLDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 166
M+P + V DV G +G + + ++D S+I P ++ + + E
Sbjct: 65 MVPDTPQVEDVLFGEHGCAKT---SLQGKTIVDMSSISPIETKRFAQR-----VNEM--- 113
Query: 167 WENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAA 226
LDAPVSGG + A GTL+ MVGG + + KPLF +GKN GG G+G
Sbjct: 114 --GADYLDAPVSGGEIGAREGTLSIMVGGEQKVFDRVKPLFDILGKNITLVGGNGDGQTC 171
Query: 227 KICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVP 286
K+ N + +A+++ VSEAL G + + L A + +
Sbjct: 172 KVANQIIVALNIEAVSEALVFASKAGADPVRVRQALMGGFASSRILEVHGE-------RM 224
Query: 287 ASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 346
+R + GF L KDLNLAL SAK + ++ P T+ Q+++ NG D S + Q
Sbjct: 225 INRTFEPGFKIALHQKDLNLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSAMVQ 284
Query: 347 HY 348
Sbjct: 285 AL 286
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} Length = 320 | Back alignment and structure |
|---|
Score = 265 bits (679), Expect = 3e-87
Identities = 84/328 (25%), Positives = 143/328 (43%), Gaps = 25/328 (7%)
Query: 24 SSPFQSSAMRRFFSSQVPSCQFES--VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVM 81
SS +F S + + F+G G+MG MA L +AGY + V +
Sbjct: 8 SSGVDLGTENLYFQSMTVESDPYARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARA 67
Query: 82 KMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRP-QLLIDS 140
+ +G E A +D+V++ML + + V DV G+ ++P L +D
Sbjct: 68 ASLAALGATIHEQARAAARDADIVVSMLENGAVVQDVLFA-QGVAAA---MKPGSLFLDM 123
Query: 141 STIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAY 200
++I P+ +R+ +A L + LD PVSGG + AE GTL M GG +
Sbjct: 124 ASITPREARDHAAR-----LGALGIA-----HLDTPVSGGTVGAEQGTLVIMAGGKPADF 173
Query: 201 QAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTK 260
+ + PL G+ + G G+G K+ N + + +++ V+EAL G + + +
Sbjct: 174 ERSLPLLKVFGR-ATHVGPHGSGQLTKLANQMIVGITIGAVAEALLFATKGGADMAKVKE 232
Query: 261 ILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPL 320
+ A + M R++ + KD+ ALA+A+E+G D P+
Sbjct: 233 AITGGFADSRVLQLHGQ---RM----VERDFAPRARLSIQLKDMRNALATAQEIGFDAPI 285
Query: 321 TSQAQDIYAKLCENGHDSKDFSCVFQHY 348
T + +YA+ E+G D S +F
Sbjct: 286 TGLFEQLYAEGVEHGLTDLDQSGLFVEL 313
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} Length = 306 | Back alignment and structure |
|---|
Score = 249 bits (639), Expect = 1e-81
Identities = 46/303 (15%), Positives = 100/303 (33%), Gaps = 21/303 (6%)
Query: 47 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVI 106
V IGLG MG MA L+K G ++A+ + + G E+ AS I
Sbjct: 11 DVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAALSASPATI 70
Query: 107 TMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 166
+L + +V G G+ + + + ++D +T + + +
Sbjct: 71 FVLLDNHATHEVL-GMPGVARA---LAHRTIVDYTTNAQDEGLALQGL-----VNQA--- 118
Query: 167 WENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAA 226
+ + + G +A++ + L + +T++ A A
Sbjct: 119 --GGHYVKGMIVAYPRNVGHRESHSIHTGDREAFEQHRALLEGLAGHTVFLPWDEALAFA 176
Query: 227 KICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVP 286
+ + +M+ EA+ G G+ S ++L +S +
Sbjct: 177 TVLHAH-AFAAMVTFFEAVGAGDRFGLPVSKTARLLLETSRFFVA-----DALEEAVRRL 230
Query: 287 ASRNY-GGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVF 345
++++ G + A S GV P+ + + G+ +D +
Sbjct: 231 ETQDFKGDQARLDVHADAFAHIAQSLHAQGVWTPVFDAVCQVVQRAAAMGYGDQDIAATT 290
Query: 346 QHY 348
+ +
Sbjct: 291 KSF 293
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} Length = 312 | Back alignment and structure |
|---|
Score = 188 bits (478), Expect = 2e-57
Identities = 62/322 (19%), Positives = 106/322 (32%), Gaps = 45/322 (13%)
Query: 24 SSPFQSSAMRRFFSSQVPSCQFESVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCN--V 80
+ FQS+AM+ +GFIG G +AS L +AG MA +D
Sbjct: 17 NLYFQSNAMK--------------LGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESW 62
Query: 81 MKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDS 140
++GV K + EVA DV+ +++ + + + L +G L D
Sbjct: 63 RPRAEELGVSCKASVAEVAGECDVIFSLVTAQAALEVAQQAGPHLCEG------ALYADF 116
Query: 141 STIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAY 200
++ P R I +S + V V G +V + A
Sbjct: 117 TSCSPAVKRAIGDVIS--------RHRPSAQYAAVAVMSAV--KPHGHRVPLVVDGDGAR 166
Query: 201 QAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTK 260
+ L + + G G A K+C + + EAL + +G++ L
Sbjct: 167 RFQAAFTLYGCRIEVLDGEVGGAALLKMCRSAVLKGLEALFLEALAAAEKMGLADRVLAS 226
Query: 261 ILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPL 320
+ S + V +E A R A +L A+ VGV+ +
Sbjct: 227 LDASFPEHHLRDLALYLVERNLE--HADR----------RAHELGEVAATLCSVGVEPLV 274
Query: 321 TSQAQDIYAKLCENGHDSKDFS 342
++ + K
Sbjct: 275 AEAGYRRLTRVAQVRAALKQRP 296
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} Length = 317 | Back alignment and structure |
|---|
Score = 175 bits (445), Expect = 1e-52
Identities = 47/323 (14%), Positives = 102/323 (31%), Gaps = 41/323 (12%)
Query: 28 QSSAMRRFFSSQVPSCQFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSD 86
SS + + ++ FIG G +A L ++A +D+ N
Sbjct: 7 HSSGVDLGTENLYFQSMMTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGA 66
Query: 87 M-------GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLID 139
+ GV + +A A DVV++++ ++ V L + ID
Sbjct: 67 LRARAAELGVEPLDDVAGIACA-DVVLSLVVGAATK-AVAASAAPHLSDE-----AVFID 119
Query: 140 SSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDA 199
+++ P T + A++ ++ V V + G
Sbjct: 120 LNSVGPDTKALAAGAIAT----------GKGSFVEGAVMARVPPYAEKVPILVAGRRAVE 169
Query: 200 YQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTL 258
++G N G G ++ K+ ++ + + EAL+ + G++ L
Sbjct: 170 ---VAERLNALGMNLEAVGETPGQASSLKMIRSVMIKGVEALLIEALSSAERAGVTERIL 226
Query: 259 TKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDC 318
+ + W + + E +R ++ A + + G++
Sbjct: 227 DSVQETFPGLDWRDVADYYLSRTFE--HGAR----------RVTEMTEAAETIESFGLNA 274
Query: 319 PLTSQAQDIYAKLCENGHDSKDF 341
P++ A + A D
Sbjct: 275 PMSRAACETIAAAHAAMKDQGLS 297
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 Length = 264 | Back alignment and structure |
|---|
Score = 150 bits (381), Expect = 1e-43
Identities = 41/237 (17%), Positives = 76/237 (32%), Gaps = 26/237 (10%)
Query: 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 107
VGFIG G + +AS L G ++ + + V ET E + VVI+
Sbjct: 3 VGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVIS 62
Query: 108 MLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW 167
+ + + + +D + I P+T R S+ +
Sbjct: 63 AVTPGVALGAARRAGRHV--------RGIYVDINNISPETVRMASSLIEKG--------- 105
Query: 168 ENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAA 226
+DA + G V A G + + G N G G+ +A
Sbjct: 106 ---GFVDAAIMGSVRRKGADIRIIASGRDAEEFMKLNR----YGLNIEVRGREPGDASAI 158
Query: 227 KICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVME 283
K+ + + E LT LG+ + ++L + + + + +
Sbjct: 159 KMLRSSYTKGVSALLWETLTAAHRLGLEE-DVLEMLEYTEGNDFRESAISRLKSSCI 214
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} Length = 266 | Back alignment and structure |
|---|
Score = 72.5 bits (177), Expect = 1e-14
Identities = 29/246 (11%), Positives = 71/246 (28%), Gaps = 26/246 (10%)
Query: 47 SVGFIGLGNMGFRMASNLMKAGYK-MAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDV 104
+ IG GN+ +A L + G++ + V+ + + EV + +
Sbjct: 12 PIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKL 71
Query: 105 VITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKK 164
I L S+ ++ G I + + + ++ + E
Sbjct: 72 YIVSLKDSA-FAELLQG----------------IVEGKREEALMVHTAGSIPMNVW-EGH 113
Query: 165 DSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGA 224
S F+ S + K + ++ N +Y +
Sbjct: 114 VPHYGVFYPMQTFSKQREVDFKEIPFFIEASSTEDAAFLKAIASTLS-NRVYDADSEQRK 172
Query: 225 AAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEG 284
+ + T + + A L + + + +++ ++ + + G
Sbjct: 173 SLHLAAVFTCNFTNHMYALAAELLKKYNLPFDVMLPLIDETARKVHELEPKTAQTG---- 228
Query: 285 VPASRN 290
PA R
Sbjct: 229 -PAIRY 233
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} Length = 358 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 9e-13
Identities = 43/191 (22%), Positives = 71/191 (37%), Gaps = 28/191 (14%)
Query: 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASD---V 104
+G IGLG MG M L K G++ V+D+N N ++ G+ + E V
Sbjct: 25 IGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEFCAKLVKPRV 84
Query: 105 VITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLID---SSTIDPQTSRNISAAVSNCILK 161
V M+P++ V + LL + ++ID S D R ++
Sbjct: 85 VWLMVPAAV-VDSMLQRMTPLLAAND-----IVIDGGNSHYQD--DIRRADQ------MR 130
Query: 162 EKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLF--LSMGKNTIYCGG 219
+ ++ +D SGG+ E G M+GG + A + P+F L+ G
Sbjct: 131 AQGITY-----VDVGTSGGIFGLERGY-CLMIGGEKQAVERLDPVFRTLAPGIGAAPRTP 184
Query: 220 AGNGAAAKICN 230
Sbjct: 185 GREKREGTAEL 195
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} Length = 286 | Back alignment and structure |
|---|
Score = 67.0 bits (163), Expect = 9e-13
Identities = 35/241 (14%), Positives = 72/241 (29%), Gaps = 22/241 (9%)
Query: 44 QFESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEAS 102
++V +G G MG R+ + + + +A ++ MG+P + +
Sbjct: 10 GPKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLT-DGDGWIDEA 68
Query: 103 DVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKE 162
DVV+ LP + + V ++ G +++ P A +
Sbjct: 69 DVVVLALP-DNIIEKVAEDIVPRVRPG-----TIVLILDAAAPYAGVMPERADITYFIGH 122
Query: 163 KKD----SWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCG 218
+ E GG+ A+ + ++ G E+ Y + +M
Sbjct: 123 PCHPPLFNDETDPAARTDYHGGI--AKQAIVCALMQGPEEHYAIGADICETMWSPVTRTH 180
Query: 219 GAGNGAAAKICNNLT---MAVSMLGVSEALT-LGQSLGISASTLTKI----LNSSSARCW 270
A + L+ + + A+ GI LN A +
Sbjct: 181 RVTTEQLAILEPGLSEMVAMPFVETMVHAVDECADRYGIDRQAALDFMIGHLNVEIAMWF 240
Query: 271 S 271
Sbjct: 241 G 241
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* Length = 215 | Back alignment and structure |
|---|
Score = 65.8 bits (160), Expect = 9e-13
Identities = 25/188 (13%), Positives = 55/188 (29%), Gaps = 28/188 (14%)
Query: 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 107
VG +G G+ +A+ L+ +G+K+ V N E + +V+
Sbjct: 31 VGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQV-TFQEEAVSSPEVIFV 89
Query: 108 MLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW 167
+ + L + + ++L+D S Q + + +
Sbjct: 90 AVFREHYS--------SLCSLSDQLAGKILVDVSNPTEQEHLQHRESNA---------EY 132
Query: 168 ENPVMLDAPVSGGV----------LAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYC 217
+ V + + G +A +A + L+MG +
Sbjct: 133 LASLFPTCTVVKAFNVISAWTLQAGPRDGNRQVPICGDQPEAKRAVSEMALAMGFMPVDM 192
Query: 218 GGAGNGAA 225
G +
Sbjct: 193 GSLASAWE 200
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 Length = 276 | Back alignment and structure |
|---|
Score = 64.8 bits (157), Expect = 4e-12
Identities = 29/247 (11%), Positives = 69/247 (27%), Gaps = 32/247 (12%)
Query: 47 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVI 106
+ F+G G + L + + + + +++ T + E + VV
Sbjct: 4 VLNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVF 63
Query: 107 TMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 166
++P + + + + + S +S+ I K+ +
Sbjct: 64 VIVPDRYI--------------------KTVANHLNLGDAVLVHCSGFLSSEIFKKSGRA 103
Query: 167 WENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAG---NG 223
+P + S + F + G E K + +
Sbjct: 104 SIHPNF--SFSSLEKALEMKDQIVFGLEGDERGLPIVKKIAEEISGKYFVIPSEKKKAYH 161
Query: 224 AAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVME 283
AA I +N V++ +S+ + L + ++ + + G
Sbjct: 162 LAAVIASNFP--VALAYLSKRIYTLLGLDEPELLIHTLMKGVADNIKKMRVECSLTG--- 216
Query: 284 GVPASRN 290
P R
Sbjct: 217 --PVKRG 221
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} Length = 201 | Back alignment and structure |
|---|
Score = 57.4 bits (138), Expect = 5e-10
Identities = 29/178 (16%), Positives = 54/178 (30%), Gaps = 11/178 (6%)
Query: 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 107
V G G+ G + +++ GY + N V + E A SDV++
Sbjct: 22 VCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQVSSLLPRGAEVL--CYSEAASRSDVIVL 79
Query: 108 MLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW 167
+ + L + +S++ ++LID S S A L
Sbjct: 80 AVHREHYDF--------LAELADSLKGRVLIDVSNNQKMNQYPESNAEYLAQLVPGAHVV 131
Query: 168 ENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAA 225
+ + A +A F+ G A + ++G + G
Sbjct: 132 KAFNTISAWALQS-GTLDASRQVFVCGNDSKAKDRVMDIARTLGLTPLDQGSLVAAKE 188
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 Length = 478 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 3e-09
Identities = 33/184 (17%), Positives = 63/184 (34%), Gaps = 38/184 (20%)
Query: 42 SCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC----NVMKMFSDMGVPTKETPFE 97
S G +GLG MG +A N+ + G+K+AV + MK + FE
Sbjct: 1 SMDV---GVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFE 57
Query: 98 -----VA--EASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ-TSR 149
A + + ++ + + + + G+ +L+D+ + R
Sbjct: 58 TMEAFAASLKKPRKALILVQAGAATDSTIEQLKKVFEKGD-----ILVDTGNAHFKDQGR 112
Query: 150 NISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLT---FMVGGSEDAYQAAKPL 206
L+ + L +SGG E G F GG+ ++ +P+
Sbjct: 113 RAQQ------LEAAGLRF-----LGMGISGG----EEGARKGPAFFPGGTLSVWEEIRPI 157
Query: 207 FLSM 210
+
Sbjct: 158 VEAA 161
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} Length = 209 | Back alignment and structure |
|---|
Score = 55.2 bits (132), Expect = 3e-09
Identities = 22/179 (12%), Positives = 40/179 (22%), Gaps = 17/179 (9%)
Query: 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 107
+ G GNMG + N AG+++ + + + + P+ A
Sbjct: 22 ITIFGKGNMGQAIGHNFEIAGHEVTYYGSK---DQATTLGEIVIMAVPYPALAALAKQYA 78
Query: 108 MLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW 167
V+D+ N N V + A +
Sbjct: 79 TQLKGKIVVDITNPLNFDTWDDLVVPADSSAAQELQQQLPDSQVLKAFNTT--------- 129
Query: 168 ENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAA 226
+ V+G + G + A Q G
Sbjct: 130 FAATLQSGQVNGKEPTT-----VLVAGNDDSAKQRFTRALADSPLEVKDAGKLKRAREL 183
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A Length = 259 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 1e-07
Identities = 10/60 (16%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNC-NVMKMFSDMGVPTKETPFEVAEASDVVI 106
+G IG+G M + L + +++ + + ++ + +P + ++ + D+VI
Sbjct: 6 IGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVI 65
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* Length = 474 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 9e-07
Identities = 39/174 (22%), Positives = 67/174 (38%), Gaps = 31/174 (17%)
Query: 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNC----NVMKMFSDMGVPTKETPFEVAEASD 103
G +G+ MG +A N+ GY +A+++ V K D + +T E + +
Sbjct: 8 FGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLE 67
Query: 104 ---VVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID-PQTSRNISAAVSNCI 159
++ M+ + + LL G+ +LID P T R +
Sbjct: 68 KPRRIMLMVQAGAATDATIKSLLPLLDIGD-----ILIDGGNTHFPDTMRRNAE------ 116
Query: 160 LKEKKDSWENPVMLDAPVSGGVLAAEAGTLT---FMVGGSEDAYQAAKPLFLSM 210
L + ++ + VSGG E G L M GG ++AY P+F +
Sbjct: 117 LADSGINF-----IGTGVSGG----EKGALLGPSMMPGGQKEAYDLVAPIFEQI 161
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* Length = 480 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 2e-06
Identities = 34/176 (19%), Positives = 65/176 (36%), Gaps = 35/176 (19%)
Query: 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFE-----VA--E 100
+G +G+ MG +A N+ GY +++ + + + K P+ V E
Sbjct: 18 IGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLE 77
Query: 101 ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLID---SSTIDPQTSRNISAAVSN 157
++ M+ + + + L G+ ++ID + D T R
Sbjct: 78 TPRRILLMVKAGAGTDAAIDSLKPYLDKGD-----IIIDGGNTFFQD--TIRRNRE---- 126
Query: 158 CILKEKKDSWENPVMLDAPVSGGVLAAEAGTLT---FMVGGSEDAYQAAKPLFLSM 210
L + ++ + VSGG E G L M GG ++AY+ P+ +
Sbjct: 127 --LSAEGFNF-----IGTGVSGG----EEGALKGPSIMPGGQKEAYELVAPILTKI 171
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} Length = 247 | Back alignment and structure |
|---|
Score = 46.3 bits (111), Expect = 5e-06
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 48 VGFIGLGNMGFRMASNLMKAGY----KMAVHDVNC-NVMKMFSDMGVPTKETPFEVAEAS 102
+GFIG GNMG M ++ ++ D+N N+ G+ T EVA+ +
Sbjct: 5 IGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEVAKNA 64
Query: 103 DVVI 106
D++I
Sbjct: 65 DILI 68
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* Length = 322 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 2e-05
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
Query: 47 SVGFIGLGNMGFRMASNLMKAGY----KMAVHDVNCNV--MKMFSDMGVPTKETPFEVAE 100
SVGFIG G + F +A AG K+ + ++ + MGV E +
Sbjct: 24 SVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQ 83
Query: 101 ASDVVI 106
SDV+
Sbjct: 84 HSDVLF 89
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} Length = 280 | Back alignment and structure |
|---|
Score = 44.0 bits (105), Expect = 3e-05
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 47 SVGFIGLGNMGFRMASNLMKAGYK---MAVHDVNC-NVMKMFSDMGVPTKETPFEVAEAS 102
++ FIG GNM + L+ GY + V + + + GV T + + A +
Sbjct: 5 NITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNA 64
Query: 103 DVVI 106
DVV+
Sbjct: 65 DVVV 68
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* Length = 482 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 5e-05
Identities = 37/179 (20%), Positives = 66/179 (36%), Gaps = 40/179 (22%)
Query: 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASD---- 103
+ IGL MG + N+ G+ + + + + F + K T A + +
Sbjct: 5 IALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDF--LANEAKGTKVLGAHSLEEMVS 62
Query: 104 ------VVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLID---SSTIDPQTSRNISAA 154
+I ++ + V + LL G+ ++ID S D T R
Sbjct: 63 KLKKPRRIILLVKAGQAVDNFIEKLVPLLDIGD-----IIIDGGNSEYRD--TMRRCRD- 114
Query: 155 VSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLT---FMVGGSEDAYQAAKPLFLSM 210
LK+K + + + VSGG E G M GG+++A+ K +F +
Sbjct: 115 -----LKDKGILF-----VGSGVSGG----EDGARYGPSLMPGGNKEAWPHIKAIFQGI 159
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} Length = 497 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 7e-05
Identities = 37/177 (20%), Positives = 67/177 (37%), Gaps = 36/177 (20%)
Query: 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMF-SDMGVPTKETPFE-----VA-- 99
G IGL MG + N G+ + ++ + + F ++ ++
Sbjct: 13 FGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDFISKL 72
Query: 100 EASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLID---SSTIDPQTSRNISAAVS 156
+ V+ ++ + + V + N LL+ G+ ++ID S D ++R
Sbjct: 73 KRPRKVMLLVKAGAPVDALINQIVPLLEKGD-----IIIDGGNSHFPD--SNRRYEELKK 125
Query: 157 NCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLT---FMVGGSEDAYQAAKPLFLSM 210
IL + + VSGG E G M GGSE+A+ K +F S+
Sbjct: 126 KGIL-----------FVGSGVSGG----EEGARYGPSLMPGGSEEAWPHIKNIFQSI 167
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} Length = 262 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 1e-04
Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVI 106
+GF+GLG MG +A + A + K + + + E+A D+++
Sbjct: 7 LGFMGLGQMGSALAHGIANANIIKKENLFYYGPSK--KNTTLNYMSSNEELARHCDIIV 63
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.8 bits (97), Expect = 3e-04
Identities = 46/303 (15%), Positives = 84/303 (27%), Gaps = 101/303 (33%)
Query: 22 LLSSPFQSSAMRRFFSS--QVPSCQFESVGFIGLG---NMGFRMAS--------NLMKAG 68
++ S S R F + + F+ N F M+ ++M
Sbjct: 54 IIMSKDAVSGTLRLFWTLLSKQEEMVQK--FVEEVLRINYKFLMSPIKTEQRQPSMMTRM 111
Query: 69 YKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEA-------SDVVIT-MLPS--SSHVLDV 118
Y + D N ++F+ V + ++ +A +V+I +L S + LDV
Sbjct: 112 Y-IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170
Query: 119 YNG-------PNGL--LQGGNSVRPQLLI------------------DSSTIDPQTSRNI 151
+ L N P+ ++ D S+ +I
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 152 SAAVSNCILKEKK---------DSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQA 202
A + +LK K + N +A F +
Sbjct: 231 QAELRR-LLKSKPYENCLLVLLNVQ-NAKAWNA---------------FNLS-------- 265
Query: 203 AKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKIL 262
K L + K + T +S+ S LT + + L K L
Sbjct: 266 CKILLTTRFKQV----------TDFLSAATTTHISLDHHSMTLTPDEVKSL----LLKYL 311
Query: 263 NSS 265
+
Sbjct: 312 DCR 314
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 355 | |||
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 100.0 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 100.0 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 100.0 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 100.0 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 100.0 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 100.0 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 100.0 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 100.0 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 100.0 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 100.0 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 100.0 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 100.0 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 100.0 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 100.0 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 100.0 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 100.0 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 100.0 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 100.0 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 100.0 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 100.0 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 100.0 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 100.0 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 100.0 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 100.0 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 100.0 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.98 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 99.98 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 99.98 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 99.98 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 99.97 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 99.97 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 99.97 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 99.97 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 99.97 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 99.96 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 99.96 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 99.96 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 99.96 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 99.94 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 99.93 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 99.92 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 99.91 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 99.91 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 99.91 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 99.91 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 99.9 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 99.9 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 99.9 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 99.89 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 99.89 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 99.89 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 99.89 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 99.86 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 99.86 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 99.86 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 99.85 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 99.84 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 99.84 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 99.84 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 99.84 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 99.83 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 99.83 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 99.82 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 99.82 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 99.82 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 99.81 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 99.81 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 99.8 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 99.79 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 99.78 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 99.78 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 99.77 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 99.77 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 99.76 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 99.76 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 99.75 | |
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 99.74 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 99.59 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 99.73 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 99.73 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 99.72 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 99.72 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 99.72 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 99.69 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 99.66 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 99.57 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 99.54 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 99.54 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 99.38 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 99.33 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 99.33 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 99.31 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 99.3 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 99.29 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 99.26 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 99.25 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 99.24 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 99.24 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 99.24 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 99.23 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 99.23 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 99.23 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 99.23 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 99.22 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 99.21 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 99.21 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 99.21 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 99.2 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 99.2 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 99.2 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 99.19 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 99.19 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 99.18 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 99.18 | |
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 99.15 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 99.12 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 99.12 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 99.12 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 99.1 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 99.1 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 99.07 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 99.06 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 99.01 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 99.01 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 99.0 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 98.97 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 98.93 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 98.88 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 98.87 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 98.86 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 98.82 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 98.8 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 98.79 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 98.78 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 98.77 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 98.75 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 98.72 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 98.72 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 98.7 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 98.7 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 98.7 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 98.7 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 98.69 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 98.69 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 98.69 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 98.69 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 98.66 | |
| 3c1a_A | 315 | Putative oxidoreductase; ZP_00056571.1, oxidoreduc | 98.65 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 98.64 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 98.64 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.64 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 98.63 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 98.6 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 98.6 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 98.6 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 98.58 | |
| 3kb6_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 98.58 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 98.58 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 98.57 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 98.57 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 98.56 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 98.56 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 98.56 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 98.56 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 98.56 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 98.55 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 98.55 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 98.55 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.53 | |
| 2p2s_A | 336 | Putative oxidoreductase; YP_050235.1, structural g | 98.52 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 98.52 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 98.5 | |
| 1h6d_A | 433 | Precursor form of glucose-fructose oxidoreductase; | 98.5 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 98.49 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 98.48 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 98.48 | |
| 3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural gen | 98.47 | |
| 2nvw_A | 479 | Galactose/lactose metabolism regulatory protein GA | 98.47 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 98.45 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 98.44 | |
| 3bio_A | 304 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.44 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 98.44 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.43 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 98.41 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 98.39 | |
| 3ohs_X | 334 | Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d | 98.39 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 98.39 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 98.37 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 98.37 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 98.35 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 98.34 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 98.34 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 98.32 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 98.31 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 98.3 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 98.3 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 98.28 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 98.27 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 98.27 | |
| 2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 98.26 | |
| 3e82_A | 364 | Putative oxidoreductase; NAD, GFO/IDH/MOCA family, | 98.26 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 98.26 | |
| 3v5n_A | 417 | Oxidoreductase; structural genomics, PSI-biology, | 98.24 | |
| 3dty_A | 398 | Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram | 98.24 | |
| 1f06_A | 320 | MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH | 98.24 | |
| 3btv_A | 438 | Galactose/lactose metabolism regulatory protein GA | 98.24 | |
| 3u3x_A | 361 | Oxidoreductase; structural genomics, PSI-biology, | 98.23 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 98.23 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 98.22 | |
| 3kux_A | 352 | Putative oxidoreductase; oxidoreductase family, cs | 98.22 | |
| 3upl_A | 446 | Oxidoreductase; rossmann fold, NADPH binding; 1.50 | 98.21 | |
| 3f4l_A | 345 | Putative oxidoreductase YHHX; structural genomics, | 98.21 | |
| 1zh8_A | 340 | Oxidoreductase; TM0312, structural genomics, JO ce | 98.21 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 98.2 | |
| 3moi_A | 387 | Probable dehydrogenase; structural genomics, PSI2, | 98.2 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 98.19 | |
| 3fef_A | 450 | Putative glucosidase LPLD; gulosidase, structural | 98.19 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 98.14 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 98.13 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 98.11 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 98.11 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 98.09 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 98.08 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 98.08 | |
| 3gdo_A | 358 | Uncharacterized oxidoreductase YVAA; structural ge | 98.07 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 98.07 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 98.07 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 98.06 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 98.06 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 98.06 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 98.05 | |
| 3fhl_A | 362 | Putative oxidoreductase; NAD-binding domain, PSI-2 | 98.04 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 98.01 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 98.01 | |
| 4gmf_A | 372 | Yersiniabactin biosynthetic protein YBTU; rossmann | 98.01 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 98.0 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 98.0 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 97.98 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 97.98 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 97.95 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 97.93 | |
| 3ulk_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 97.93 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 97.93 | |
| 3i23_A | 349 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.92 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 97.91 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 97.9 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 97.9 | |
| 4ew6_A | 330 | D-galactose-1-dehydrogenase protein; nysgrc, PSI-b | 97.88 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 97.88 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 97.88 | |
| 3oqb_A | 383 | Oxidoreductase; structural genomics, protein struc | 97.87 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 97.86 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 97.86 | |
| 4fb5_A | 393 | Probable oxidoreductase protein; PSI-biology, nysg | 97.85 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 97.82 | |
| 2b0j_A | 358 | 5,10-methenyltetrahydromethanopterin hydrogenase; | 97.8 | |
| 3oa2_A | 318 | WBPB; oxidoreductase, sugar biosynthesis, dehydrog | 97.8 | |
| 1lc0_A | 294 | Biliverdin reductase A; oxidoreductase, tetrapyrro | 97.8 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 97.79 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 97.79 | |
| 2nu8_A | 288 | Succinyl-COA ligase [ADP-forming] subunit alpha; c | 97.78 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 97.78 | |
| 3o9z_A | 312 | Lipopolysaccaride biosynthesis protein WBPB; oxido | 97.77 | |
| 4h3v_A | 390 | Oxidoreductase domain protein; structural genomics | 97.77 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 97.76 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 97.76 | |
| 4gqa_A | 412 | NAD binding oxidoreductase; structural genomics, P | 97.73 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 97.67 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 97.67 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 97.66 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 97.66 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 97.65 | |
| 2vt3_A | 215 | REX, redox-sensing transcriptional repressor REX; | 97.64 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 97.62 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 97.62 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 97.61 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 97.58 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 97.58 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 97.57 | |
| 1j5p_A | 253 | Aspartate dehydrogenase; TM1643, structural genomi | 97.56 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 97.55 | |
| 3ip3_A | 337 | Oxidoreductase, putative; structural genomics, PSI | 97.53 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 97.52 | |
| 2czc_A | 334 | Glyceraldehyde-3-phosphate dehydrogenase; glycolys | 97.5 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 97.5 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 97.49 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 97.49 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 97.48 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 97.47 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 97.47 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 97.43 | |
| 1cf2_P | 337 | Protein (glyceraldehyde-3-phosphate dehydrogenase) | 97.42 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 97.41 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 97.41 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 97.41 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 97.4 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 97.39 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 97.38 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 97.37 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 97.36 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 97.34 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 97.33 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 97.31 | |
| 3ing_A | 325 | Homoserine dehydrogenase; NP_394635.1, structural | 97.27 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 97.27 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 97.26 | |
| 2yv1_A | 294 | Succinyl-COA ligase [ADP-forming] subunit alpha; C | 97.26 | |
| 3mtj_A | 444 | Homoserine dehydrogenase; rossmann-fold, PSI, MCSG | 97.26 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 97.23 | |
| 2yv2_A | 297 | Succinyl-COA synthetase alpha chain; COA-binding d | 97.22 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 97.22 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 97.21 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 97.21 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 97.21 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 97.2 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 97.2 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 97.18 | |
| 1b7g_O | 340 | Protein (glyceraldehyde 3-phosphate dehydrogenase; | 97.13 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 97.1 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 97.08 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 97.08 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 97.05 | |
| 2ejw_A | 332 | HDH, homoserine dehydrogenase; NAD-dependent, oxid | 97.02 | |
| 3u95_A | 477 | Glycoside hydrolase, family 4; hydrolysis, cytosol | 97.0 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 96.99 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 96.99 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 96.97 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 96.97 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 96.94 | |
| 3keo_A | 212 | Redox-sensing transcriptional repressor REX; DNA b | 96.92 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 96.89 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 96.89 | |
| 2yyy_A | 343 | Glyceraldehyde-3-phosphate dehydrogenase; glyceral | 96.88 | |
| 2dt5_A | 211 | AT-rich DNA-binding protein; REX, NADH, NAD, rossm | 96.87 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 96.86 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 96.86 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 96.86 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 96.83 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 96.82 | |
| 3do5_A | 327 | HOM, homoserine dehydrogenase; NP_069768.1, putati | 96.79 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 96.74 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 96.73 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 96.71 | |
| 2fp4_A | 305 | Succinyl-COA ligase [GDP-forming] alpha-chain, mit | 96.7 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 96.7 | |
| 1up7_A | 417 | 6-phospho-beta-glucosidase; hydrolase, family4 hyd | 96.7 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 96.63 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 96.6 | |
| 3ff4_A | 122 | Uncharacterized protein; structural genomics, PSI- | 96.59 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 96.59 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 96.54 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 96.53 | |
| 1u8f_O | 335 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l | 96.52 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 96.5 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 96.49 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 96.47 | |
| 1ebf_A | 358 | Homoserine dehydrogenase; dinucleotide, NAD, dimer | 96.47 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 96.45 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 96.41 | |
| 3c8m_A | 331 | Homoserine dehydrogenase; structural genomics, APC | 96.41 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 96.4 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 96.38 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 96.31 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 96.29 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 96.28 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 96.28 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 96.28 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 96.27 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 96.27 | |
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 96.23 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 96.21 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 96.18 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 96.17 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 96.15 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 96.14 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 96.1 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 96.09 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 96.08 | |
| 3hn7_A | 524 | UDP-N-acetylmuramate-L-alanine ligase; ATP-binding | 96.05 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 96.03 | |
| 3e5r_O | 337 | PP38, glyceraldehyde-3-phosphate dehydrogenase, cy | 96.02 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 96.02 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 96.02 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 95.98 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 95.95 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 95.93 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 95.93 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 95.93 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 95.92 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 95.92 | |
| 3rp8_A | 407 | Flavoprotein monooxygenase; FAD-binding protein, o | 95.91 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 95.9 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 95.88 | |
| 3hsk_A | 381 | Aspartate-semialdehyde dehydrogenase; candida albi | 95.86 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 95.83 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 95.81 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 95.81 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 95.79 | |
| 1p3d_A | 475 | UDP-N-acetylmuramate--alanine ligase; alpha/beta p | 95.76 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 95.76 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 95.75 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 95.73 | |
| 2f00_A | 491 | UDP-N-acetylmuramate--L-alanine ligase; amide bond | 95.72 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 95.72 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 95.71 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 95.68 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 95.67 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 95.65 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 95.64 | |
| 3h2z_A | 382 | Mannitol-1-phosphate 5-dehydrogenase; PSI- protein | 95.64 | |
| 2dvm_A | 439 | Malic enzyme, 439AA long hypothetical malate oxido | 95.62 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 95.59 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 95.56 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 95.55 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 95.55 | |
| 2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; A | 95.54 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 95.53 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 95.53 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 95.52 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 95.51 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 95.5 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 95.48 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 95.47 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 95.47 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 95.45 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 95.44 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 95.43 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 95.39 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 95.38 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 95.38 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 95.38 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 95.36 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 95.35 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 95.35 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 95.35 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 95.35 | |
| 2xdo_A | 398 | TETX2 protein; tetracycline degradation, tigecycli | 95.34 | |
| 3cps_A | 354 | Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g | 95.33 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 95.32 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 95.32 | |
| 2qrj_A | 394 | Saccharopine dehydrogenase, NAD+, L-lysine- formin | 95.29 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 95.29 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 95.28 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 95.28 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 95.27 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 95.27 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 95.25 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 95.24 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 95.23 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 95.16 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 95.15 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 95.15 | |
| 1n2s_A | 299 | DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold | 95.15 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 95.14 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 95.13 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 95.13 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 95.11 | |
| 3ihm_A | 430 | Styrene monooxygenase A; rossman fold, anti-parall | 95.11 | |
| 3alj_A | 379 | 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; | 95.06 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 95.05 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 95.05 | |
| 2bi7_A | 384 | UDP-galactopyranose mutase; FAD, flavoprotein, iso | 95.03 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 95.02 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 95.01 | |
| 4b4u_A | 303 | Bifunctional protein fold; oxidoreductase; HET: NA | 95.01 | |
| 1yvv_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 95.0 | |
| 2ywl_A | 180 | Thioredoxin reductase related protein; uncharacter | 94.99 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 94.98 | |
| 2o7s_A | 523 | DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat | 94.98 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 94.97 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 94.95 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 94.95 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 94.94 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 94.92 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 94.91 | |
| 3qj4_A | 342 | Renalase; FAD/NAD(P)-binding rossmann fold superfa | 94.91 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 94.89 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 94.89 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 94.88 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 94.84 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 94.84 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 94.83 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 94.82 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 94.81 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 94.8 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 94.8 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 94.8 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 94.79 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 94.78 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 94.77 | |
| 2vou_A | 397 | 2,6-dihydroxypyridine hydroxylase; oxidoreductase, | 94.77 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 94.75 | |
| 1ryi_A | 382 | Glycine oxidase; flavoprotein, protein-inhibitor c | 94.74 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 94.74 | |
| 4dgk_A | 501 | Phytoene dehydrogenase; the FAD/NAD(P)-binding ros | 94.73 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 94.73 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 94.73 | |
| 3itj_A | 338 | Thioredoxin reductase 1; disulfide B flavoprotein, | 94.71 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 94.71 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 94.71 |
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-56 Score=413.44 Aligned_cols=298 Identities=43% Similarity=0.705 Sum_probs=279.1
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPN 123 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~ 123 (355)
.|+||||||+|+||.+||++|.++||+|++|||++++++.+.+.|+..++|+.|+++.+|+||+|+|+++++++|+....
T Consensus 2 ~M~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~a~s~~e~~~~~dvv~~~l~~~~~v~~V~~~~~ 81 (300)
T 3obb_A 2 HMKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDD 81 (300)
T ss_dssp -CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTTCSEEEECCSCHHHHHHHHHSSS
T ss_pred CcCEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHcCCEEcCCHHHHHhcCCceeecCCchHHHHHHHhchh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred ccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecCCHHHHHHH
Q 018506 124 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAA 203 (355)
Q Consensus 124 ~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg~~~~~~~v 203 (355)
++++.. .++++|||+||++|.+++++.+.+.+ . |++|+|+|++|++..+..|++++|+||++++++++
T Consensus 82 g~~~~~--~~g~iiId~sT~~p~~~~~~a~~~~~------~----G~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~ 149 (300)
T 3obb_A 82 GLLAHI--APGTLVLECSTIAPTSARKIHAAARE------R----GLAMLDAPVSGGTAGAAAGTLTFMVGGDAEALEKA 149 (300)
T ss_dssp SSTTSC--CC-CEEEECSCCCHHHHHHHHHHHHT------T----TCEEEECCEESCHHHHHHTCEEEEEESCHHHHHHH
T ss_pred hhhhcC--CCCCEEEECCCCCHHHHHHHHHHHHH------c----CCEEEecCCCCCHHHHHhCCEEEEEeCCHHHHHHH
Confidence 887763 36789999999999999999998864 2 38999999999999999999999999999999999
Q ss_pred HHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcccccCCCCCCCccc
Q 018506 204 KPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVME 283 (355)
Q Consensus 204 ~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 283 (355)
+++|+.++++++|+|+.|+|+.+|+++|.+.+.++++++|++.++++.|+|++.++++++.+.+.+|..+.+.|.+....
T Consensus 150 ~p~l~~~g~~i~~~G~~G~g~~~Kl~~N~l~~~~~~a~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~~~~~~p~~~~~~ 229 (300)
T 3obb_A 150 RPLFEAMGRNIFHAGPDGAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEIMRRSSGGNWALEVYNPWPGVME 229 (300)
T ss_dssp HHHHHHHEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCCHHHHHCCCSTTTST
T ss_pred HHHHHHhCCCEEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCcccchHHHhhccccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888888777766
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHHHHHHHhcCCC
Q 018506 284 GVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGKD 353 (355)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~~~~ 353 (355)
..+..++|.++|.++.+.||++++++++++.|+++|+.+.+.++|+++.++|+|++||++++++|.+..+
T Consensus 230 ~~~~~~~~~~~f~~~l~~KDl~l~~~~A~~~g~~~p~~~~a~~~~~~a~~~G~g~~D~sal~~~~e~~~G 299 (300)
T 3obb_A 230 NAPASRDYSGGFMAQLMAKDLGLAQEAAQASASSTPMGSLALSLYRLLLKQGYAERDFSVVQKLFDPTQG 299 (300)
T ss_dssp TSGGGGTTCSSSBHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHCTTC-
T ss_pred hccccccCCccchHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHhcC
Confidence 6677889999999999999999999999999999999999999999999999999999999998876544
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-52 Score=383.08 Aligned_cols=285 Identities=23% Similarity=0.361 Sum_probs=253.0
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCCcc
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGL 125 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~~~ 125 (355)
.||||||+|+||.+||++|+++||+|++|||++++++++.+.|+..++|+.|+++.+|+||+|+|++.++++++... +
T Consensus 6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~~dvvi~~l~~~~~~~~v~~~~--~ 83 (297)
T 4gbj_A 6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAITPGGIVFSVLADDAAVEELFSME--L 83 (297)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTTTTTTCEECSSGGGGCCTTCEEEECCSSHHHHHHHSCHH--H
T ss_pred CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCeEeCCHHHHHhcCCceeeeccchhhHHHHHHHH--H
Confidence 58999999999999999999999999999999999999999999999999999999999999999998888876432 3
Q ss_pred ccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecCCHHHHHHHHH
Q 018506 126 LQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKP 205 (355)
Q Consensus 126 l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg~~~~~~~v~~ 205 (355)
+.. ..++.++||+||++|.+.+++.+.+.+. +++|+|+|++|++..+..|++++|+||+++.++++++
T Consensus 84 ~~~--~~~~~iiid~sT~~p~~~~~~~~~~~~~----------g~~~ldapVsGg~~~a~~g~l~im~gG~~~~~~~~~~ 151 (297)
T 4gbj_A 84 VEK--LGKDGVHVSMSTISPETSRQLAQVHEWY----------GAHYVGAPIFARPEAVRAKVGNICLSGNAGAKERIKP 151 (297)
T ss_dssp HHH--HCTTCEEEECSCCCHHHHHHHHHHHHHT----------TCEEEECCEECCHHHHHHTCCEEEEEECHHHHHHHHH
T ss_pred Hhh--cCCCeEEEECCCCChHHHHHHHHHHHhc----------CCceecCCcCCCccccccccceeecccchhHHHHHHH
Confidence 332 2356799999999999999999988642 3899999999999999999999999999999999999
Q ss_pred HHHHcCCCeEEeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcccccCCCCCCCcccC
Q 018506 206 LFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEG 284 (355)
Q Consensus 206 ll~~~g~~~~~~g~-~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 284 (355)
+|+.++++++|+|+ +|+|+.+|+++|.+.+.++++++|++.++++.|+|+++++++++.+.+.+|..+.+.+
T Consensus 152 ~l~~~g~~i~~~g~~~G~g~~~Kl~~N~~~~~~~~~~aEa~~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~------- 224 (297)
T 4gbj_A 152 IVENFVKGVFDFGDDPGAANVIKLAGNFMIACSLEMMGEAFTMAEKNGISRQSIYEMLTSTLFAAPIFQNYGK------- 224 (297)
T ss_dssp HHHTTCSEEEECCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTTTCSHHHHHHHH-------
T ss_pred HHHHhhCCeEEecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcccCchhhccCc-------
Confidence 99999999999985 8999999999999999999999999999999999999999999999988887654432
Q ss_pred CCCCCCCCC-CcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHHHHHHHhcC
Q 018506 285 VPASRNYGG-GFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGG 351 (355)
Q Consensus 285 ~~~~~~~~~-~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~~ 351 (355)
.+..++|.| +|+++.+.||++++++++++.|+|+|+.+.+.++|+.+.++|+|++||+++++.+.+.
T Consensus 225 ~~~~~~~~p~~f~~~l~~KDl~l~~~~A~~~g~~~p~~~~~~~~~~~a~~~G~g~~D~sal~~~~~~~ 292 (297)
T 4gbj_A 225 LVASNTYEPVAFRFPLGLKDINLTLQTASDVNAPMPFADIIRNRFISGLAKGRENLDWGALALGASDD 292 (297)
T ss_dssp HHHHTCCCSCSSBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGGHHHHHH
T ss_pred cccCCCCCCccchhHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 234568886 8999999999999999999999999999999999999999999999999999988754
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-48 Score=356.75 Aligned_cols=301 Identities=30% Similarity=0.419 Sum_probs=262.1
Q ss_pred cccccCCCCCCCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCC
Q 018506 32 MRRFFSSQVPSCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPS 111 (355)
Q Consensus 32 ~~~~~~~~~~~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~ 111 (355)
.+.|...+.....||||+|||+|.||.+||.+|+++||+|++|||++++++.+.+.|+..++++.++++++|+||+|+|+
T Consensus 8 ~~~~~~~~~~~~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~~~~~~aDvvi~~vp~ 87 (310)
T 3doj_A 8 HHHSSGLVPRGSHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIAMLSD 87 (310)
T ss_dssp ----------CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSS
T ss_pred cccccccCcccccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeEcCCHHHHHHhCCEEEEEcCC
Confidence 34455555556778999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred chHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEE
Q 018506 112 SSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTF 191 (355)
Q Consensus 112 ~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~ 191 (355)
+.++++++....+++.. ..++++|||+||+.|...+.+.+.+.+ . +.+|+++|++|++..+..+++++
T Consensus 88 ~~~~~~v~~~~~~l~~~--l~~g~~vv~~st~~~~~~~~~~~~~~~------~----g~~~v~~pv~g~~~~a~~g~l~i 155 (310)
T 3doj_A 88 PCAALSVVFDKGGVLEQ--ICEGKGYIDMSTVDAETSLKINEAITG------K----GGRFVEGPVSGSKKPAEDGQLII 155 (310)
T ss_dssp HHHHHHHHHSTTCGGGG--CCTTCEEEECSCCCHHHHHHHHHHHHH------T----TCEEEECCEECCHHHHHHTCEEE
T ss_pred HHHHHHHHhCchhhhhc--cCCCCEEEECCCCCHHHHHHHHHHHHH------c----CCEEEeCCCCCChhHHhcCCeEE
Confidence 88999998443334433 236689999999999999998887754 1 27899999999999999999999
Q ss_pred EecCCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccc
Q 018506 192 MVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWS 271 (355)
Q Consensus 192 ~~gg~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~ 271 (355)
++||+++.++.++++|+.+|++++++++.|.+.++|+++|.+.+.++++++|++.++++.|+|++++.+++..+...+|.
T Consensus 156 ~~gg~~~~~~~~~~ll~~~g~~~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~~~s~~ 235 (310)
T 3doj_A 156 LAAGDKALFEESIPAFDVLGKRSFYLGQVGNGAKMKLIVNMIMGSMMNAFSEGLVLADKSGLSSDTLLDILDLGAMTNPM 235 (310)
T ss_dssp EEEECHHHHHHHHHHHHHHEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHSTTCCHH
T ss_pred EEcCCHHHHHHHHHHHHHhCCCEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998777765
Q ss_pred ccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHHHHHHHhcC
Q 018506 272 SDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGG 351 (355)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~~ 351 (355)
..... + ++..++|.++|+++++.||++++++++++.|+++|+++.+.++|+.+.++|+|+.||+++++++.+.
T Consensus 236 ~~~~~--~-----~~~~~~~~~~f~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~ 308 (310)
T 3doj_A 236 FKGKG--P-----SMNKSSYPPAFPLKHQQKDMRLALALGDENAVSMPVAAAANEAFKKARSLGLGDLDFSAVIEAVKFS 308 (310)
T ss_dssp HHHHH--H-----HHHTTCCCCSSBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHHCC
T ss_pred HHHHh--h-----hhhcCCCCCCccHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHhc
Confidence 44321 1 2345689999999999999999999999999999999999999999999999999999999987664
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-46 Score=349.23 Aligned_cols=290 Identities=26% Similarity=0.414 Sum_probs=260.1
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
..+|||+|||+|.||.+++.+|+++||+|++|||++++++.+.+.|+..++++.++++++|+||+|+|++..++.++...
T Consensus 29 ~~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~~ 108 (320)
T 4dll_A 29 PYARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVVSMLENGAVVQDVLFAQ 108 (320)
T ss_dssp CCCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCEEESSHHHHHTTCSEEEECCSSHHHHHHHHTTT
T ss_pred cCCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCCCEeeCCHHHHHhcCCEEEEECCCHHHHHHHHcch
Confidence 45689999999999999999999999999999999999999999898888999999999999999999988999988732
Q ss_pred CccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecCCHHHHHH
Q 018506 123 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQA 202 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg~~~~~~~ 202 (355)
+++.. ..++++|||+||+.|...+.+.+.+.+ . +.+|+++|+++++..+..+++.+++||++++++.
T Consensus 109 -~~~~~--l~~~~~vi~~st~~~~~~~~~~~~~~~------~----g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~ 175 (320)
T 4dll_A 109 -GVAAA--MKPGSLFLDMASITPREARDHAARLGA------L----GIAHLDTPVSGGTVGAEQGTLVIMAGGKPADFER 175 (320)
T ss_dssp -CHHHH--CCTTCEEEECSCCCHHHHHHHHHHHHH------T----TCEEEECCEECHHHHHHHTCEEEEEESCHHHHHH
T ss_pred -hHHhh--CCCCCEEEecCCCCHHHHHHHHHHHHH------c----CCEEEeCCCcCCHhHHhcCCeeEEeCCCHHHHHH
Confidence 33332 125689999999999999998887754 1 2789999999999999999999999999999999
Q ss_pred HHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcccccCCCCCCCcc
Q 018506 203 AKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVM 282 (355)
Q Consensus 203 v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 282 (355)
++++|+.+ ++++++|+.|.+.++|+++|.+.+..+++++|++.++++.|+|++++.+++..+.+.+|......+
T Consensus 176 ~~~ll~~~-~~~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~~~s~~~~~~~~----- 249 (320)
T 4dll_A 176 SLPLLKVF-GRATHVGPHGSGQLTKLANQMIVGITIGAVAEALLFATKGGADMAKVKEAITGGFADSRVLQLHGQ----- 249 (320)
T ss_dssp HHHHHHHH-EEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHTTSTTCBHHHHTHHH-----
T ss_pred HHHHHHhc-CCEEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcccccCHHHHHhhh-----
Confidence 99999999 889999999999999999999999999999999999999999999999999998877776543322
Q ss_pred cCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHHHHHHHhcCCC
Q 018506 283 EGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGKD 353 (355)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~~~~ 353 (355)
++..++|.++|+++++.||++++++++++.|+++|+++.+.++|+.+.++|+|++||+++++++.+..+
T Consensus 250 --~~l~~~~~~gf~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~~ 318 (320)
T 4dll_A 250 --RMVERDFAPRARLSIQLKDMRNALATAQEIGFDAPITGLFEQLYAEGVEHGLTDLDQSGLFVELASRNG 318 (320)
T ss_dssp --HHHTTCCCCSSBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTTTTSBGGGHHHHHHHC--
T ss_pred --hhccCCCCCcccHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHhcC
Confidence 234568999999999999999999999999999999999999999999999999999999998876544
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-46 Score=342.86 Aligned_cols=286 Identities=31% Similarity=0.484 Sum_probs=257.5
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCCc
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNG 124 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~~ 124 (355)
||||+|||+|+||.+++.+|+++||+|++|||++++++.+.+.|+..++++.++++++|+||+|+|++.++++++....+
T Consensus 1 M~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~advvi~~v~~~~~~~~v~~~~~~ 80 (287)
T 3pdu_A 1 MTTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAMLADPAAAREVCFGANG 80 (287)
T ss_dssp CCCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHHHTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTC
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHHcCCEEEEEcCCHHHHHHHHcCchh
Confidence 57999999999999999999999999999999999999999888888899999999999999999998889999844333
Q ss_pred cccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecCCHHHHHHHH
Q 018506 125 LLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAK 204 (355)
Q Consensus 125 ~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg~~~~~~~v~ 204 (355)
+... ..+++++||+||+.|...+.+.+.+.+ . +.+|+++|+++++..+..+++++++|++++.++.++
T Consensus 81 l~~~--l~~g~~vv~~st~~~~~~~~~~~~~~~------~----g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~ 148 (287)
T 3pdu_A 81 VLEG--IGGGRGYIDMSTVDDETSTAIGAAVTA------R----GGRFLEAPVSGTKKPAEDGTLIILAAGDQSLFTDAG 148 (287)
T ss_dssp GGGT--CCTTCEEEECSCCCHHHHHHHHHHHHH------T----TCEEEECCEECCHHHHHHTCEEEEEEECHHHHHHTH
T ss_pred hhhc--ccCCCEEEECCCCCHHHHHHHHHHHHH------c----CCEEEECCccCCHHHHhcCCEEEEEeCCHHHHHHHH
Confidence 4433 235689999999999999988887753 1 278999999999999999999999999999999999
Q ss_pred HHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcccccCCCCCCCcccC
Q 018506 205 PLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEG 284 (355)
Q Consensus 205 ~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 284 (355)
++|+.+|++++++++.|.+.++|+++|.+.+.++++++|++.++++.|+|++++.+++..+...+|...... +
T Consensus 149 ~ll~~~g~~~~~~g~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~--~----- 221 (287)
T 3pdu_A 149 PAFAALGKKCLHLGEVGQGARMKLVVNMIMGQMMTALGEGMALGRNCGLDGGQLLEVLDAGAMANPMFKGKG--Q----- 221 (287)
T ss_dssp HHHHHHEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTCCHHHHHHH--H-----
T ss_pred HHHHHhCCCEEEcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhccccChHHHhhc--c-----
Confidence 999999999999999999999999999999999999999999999999999999999999887777554332 1
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHHHHHHHh
Q 018506 285 VPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYY 349 (355)
Q Consensus 285 ~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g~g~~d~~~~~~~~~ 349 (355)
++..++|.++|+++++.||++++++++++.|+++|+++.++++|+++.++|+|++||+++++++.
T Consensus 222 ~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~ 286 (287)
T 3pdu_A 222 MLLSGEFPTSFPLKHMQKDLRLAVELGDRLGQPLHGAATANESFKRARAAGHADEDFAAVFRVLE 286 (287)
T ss_dssp HHHHTCCCCSSBHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHC
T ss_pred ccccCCCCCCCcHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCCHHHHHHHHh
Confidence 23356888999999999999999999999999999999999999999999999999999999764
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-46 Score=343.72 Aligned_cols=289 Identities=27% Similarity=0.402 Sum_probs=255.2
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCC-CCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT-KETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~-~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
++|||+|||+|.||.+|+.+|+++||+|++|||++++++.+.+.|... ++++.++++++|+||+|+|++..++.++...
T Consensus 6 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~e~~~~aDvvi~~vp~~~~~~~v~~~~ 85 (303)
T 3g0o_A 6 TDFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQVLFGE 85 (303)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEESSSTTTTTTCSEEEECCSSHHHHHHHHC--
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccCCHHHHHhcCCEEEEECCCHHHHHHHHhCh
Confidence 458999999999999999999999999999999999999999988887 8899999999999999999988899988433
Q ss_pred CccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecCCHHHHHH
Q 018506 123 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQA 202 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg~~~~~~~ 202 (355)
.++... ..++++|||+||+.|...+.+.+.+.+ . +.+|+++|+++++..+..+++.+++|++++.++.
T Consensus 86 ~~l~~~--l~~g~ivv~~st~~~~~~~~~~~~~~~------~----g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~ 153 (303)
T 3g0o_A 86 DGVAHL--MKPGSAVMVSSTISSADAQEIAAALTA------L----NLNMLDAPVSGGAVKAAQGEMTVMASGSEAAFTR 153 (303)
T ss_dssp CCCGGG--SCTTCEEEECSCCCHHHHHHHHHHHHT------T----TCEEEECCEESCHHHHHTTCEEEEEECCHHHHHH
T ss_pred hhHHhh--CCCCCEEEecCCCCHHHHHHHHHHHHH------c----CCeEEeCCCCCChhhhhcCCeEEEeCCCHHHHHH
Confidence 333332 125689999999999999988887753 1 3789999999999999999999999999999999
Q ss_pred HHHHHHHcCCCeEEeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcccccCCCCCCCc
Q 018506 203 AKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGV 281 (355)
Q Consensus 203 v~~ll~~~g~~~~~~g~-~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 281 (355)
++++|+.+|++++++++ +|.+.+.|+++|.+.+.++++++|++.++++.|+|++++.+++..+.+.+|...... +.+
T Consensus 154 ~~~ll~~~g~~~~~~~~~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~~~s~~~~~~~--~~~ 231 (303)
T 3g0o_A 154 LKPVLDAVASNVYRISDTPGAGSTVKIIHQLLAGVHIAAAAEAMALAARAGIPLDVMYDVVTHAAGNSWMFENRM--QHV 231 (303)
T ss_dssp HHHHHHHHEEEEEEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCCHHHHHHH--HHH
T ss_pred HHHHHHHHCCCEEECCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCHHHHhhh--HHH
Confidence 99999999999999998 999999999999999999999999999999999999999999999877777654322 222
Q ss_pred ccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHHHHHHHhcC
Q 018506 282 MEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGG 351 (355)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~~ 351 (355)
..++|.++|+++++.||++++++++++.|+++|+++.++++|+++.++|+|++||+++++++.++
T Consensus 232 -----~~~~~~~~~~~~~~~kD~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~ 296 (303)
T 3g0o_A 232 -----VDGDYTPRSAVDIFVKDLGLVADTAKALRFPLPLASTALNMFTSASNAGYGKEDDSAVIKIFSGE 296 (303)
T ss_dssp -----HTTCCCCSSBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTTTTSBGGGGGGGC---
T ss_pred -----hcCCCCCCCchHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhc
Confidence 34688899999999999999999999999999999999999999999999999999999976544
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-45 Score=338.51 Aligned_cols=285 Identities=33% Similarity=0.497 Sum_probs=256.3
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCCcc
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGL 125 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~~~ 125 (355)
|||+|||+|.||.+++.+|+++||+|++|||++++++.+.+.|+..++++.++++++|+||+|+|++.++++++....++
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l 81 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFAMLADPAAAEEVCFGKHGV 81 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEcCCHHHHHHHHcCcchH
Confidence 79999999999999999999999999999999999999999999999999999999999999999888999998433333
Q ss_pred ccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecCCHHHHHHHHH
Q 018506 126 LQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKP 205 (355)
Q Consensus 126 l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg~~~~~~~v~~ 205 (355)
... ..++++|||+||+.|.+.+.+.+.+.+ . +.+|+++|+++++..+..+++.+++|++++.++.+++
T Consensus 82 ~~~--l~~~~~vi~~st~~~~~~~~~~~~~~~------~----g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ 149 (287)
T 3pef_A 82 LEG--IGEGRGYVDMSTVDPATSQRIGVAVVA------K----GGRFLEAPVSGSKKPAEDGTLIILAAGDRNLYDEAMP 149 (287)
T ss_dssp HHH--CCTTCEEEECSCCCHHHHHHHHHHHHH------T----TCEEEECCEECCHHHHHHTCEEEEEEECHHHHHHHHH
T ss_pred hhc--CCCCCEEEeCCCCCHHHHHHHHHHHHH------h----CCEEEECCCcCCHHHHhcCCEEEEEeCCHHHHHHHHH
Confidence 332 125679999999999999988887753 1 2789999999999999999999999999999999999
Q ss_pred HHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcccccCCCCCCCcccCC
Q 018506 206 LFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGV 285 (355)
Q Consensus 206 ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 285 (355)
+|+.+|.+++++++.|.+.+.|+++|.+.+.++++++|++.++++.|+|++++.+++..+...+|...... + .
T Consensus 150 ll~~~g~~~~~~g~~g~~~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~~~~~s~~~~~~~--~-----~ 222 (287)
T 3pef_A 150 GFEKMGKKIIHLGDVGKGAEMKLVVNMVMGGMMACFCEGLALGEKAGLATDAILDVIGAGAMANPMFALKG--G-----L 222 (287)
T ss_dssp HHHHHEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTCCHHHHHHH--H-----H
T ss_pred HHHHhCCCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccccHHHHHHh--h-----h
Confidence 99999999999999999999999999999999999999999999999999999999999887777554332 1 2
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHHHHHHHh
Q 018506 286 PASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYY 349 (355)
Q Consensus 286 ~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g~g~~d~~~~~~~~~ 349 (355)
+..++|.++|.++++.||++++++++++.|+++|+++.++++|+++.++|+|++||+++++++.
T Consensus 223 ~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~ 286 (287)
T 3pef_A 223 IRDRNFAPAFPLKHMQKDLRLAVALGDRVGQPLVASAAANELFKGARAAGFGDEDFSAIFKTYE 286 (287)
T ss_dssp HHTTCCCCSSBHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGGGGGC
T ss_pred hhcCCCCCCCchHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCccCHHHHHHHHh
Confidence 3356888999999999999999999999999999999999999999999999999999998653
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-42 Score=319.73 Aligned_cols=269 Identities=28% Similarity=0.361 Sum_probs=240.9
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCCc
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNG 124 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~~ 124 (355)
+|||+|||+|.||.++|.+|+++||+|++|||++++++.+.+.|+..+++++++++ +|+||+|+|++.++++++.++.+
T Consensus 15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~-aDvvi~~vp~~~~~~~v~~~l~~ 93 (296)
T 3qha_A 15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAA-ADLIHITVLDDAQVREVVGELAG 93 (296)
T ss_dssp CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHHTTCEECSSHHHHTT-SSEEEECCSSHHHHHHHHHHHHT
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCEEcCCHHHHHh-CCEEEEECCChHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999998 99999999998888888855433
Q ss_pred cccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecCCHHHHHHHH
Q 018506 125 LLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAK 204 (355)
Q Consensus 125 ~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg~~~~~~~v~ 204 (355)
.+ .++++|||+||+.|.+.+++.+.+.+ . +.+|+++|+++++..+..+++.+++||+++.+++++
T Consensus 94 ~l-----~~g~ivv~~st~~~~~~~~~~~~~~~------~----g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~ 158 (296)
T 3qha_A 94 HA-----KPGTVIAIHSTISDTTAVELARDLKA------R----DIHIVDAPVSGGAAAAARGELATMVGADREVYERIK 158 (296)
T ss_dssp TC-----CTTCEEEECSCCCHHHHHHHHHHHGG------G----TCEEEECCEESCHHHHHHTCEEEEEECCHHHHHHHH
T ss_pred hc-----CCCCEEEEeCCCCHHHHHHHHHHHHH------c----CCEEEeCCCcCCHHHHhcCCccEEecCCHHHHHHHH
Confidence 33 25679999999999999999888753 1 278999999999999999999999999999999999
Q ss_pred HHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH------HHHHHhcCCCcccccCCCCC
Q 018506 205 PLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTL------TKILNSSSARCWSSDSYNPV 278 (355)
Q Consensus 205 ~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~------~~~~~~~~~~s~~~~~~~~~ 278 (355)
++|+.++++++++|+.|.++++|+++|.+.+..+++++|++.++++.|+|++++ .+++..+.+.+|... .
T Consensus 159 ~ll~~~g~~~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~~~~i~~~~~~s~~~~----~ 234 (296)
T 3qha_A 159 PAFKHWAAVVIHAGEPGAGTRMKLARNMLTFTSYAAACEAMKLAEAAGLDLQALGRVVRHTDALTGGPGAIMVRD----N 234 (296)
T ss_dssp HHHHHHEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCCGGGGCCCS----S
T ss_pred HHHHHHcCCeEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHhhhcchHHHHhcCcccCHHhh----c
Confidence 999999999999999999999999999999999999999999999999999999 999998877776543 2
Q ss_pred CCcccCCCCCCCCCCCcch-----hhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCC
Q 018506 279 PGVMEGVPASRNYGGGFAS-----KLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSK 339 (355)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~-----~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g~g~~ 339 (355)
+. +.++ |.++|.+ +++.||++++++.|++.|+++|+++.++++|+.+.+.|++++
T Consensus 235 ~~-----~~~~-~~~~f~~~~~~~~~~~KD~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~ 294 (296)
T 3qha_A 235 MK-----DLEP-DNFLYQPFLHTRGLGEKDLSLALALGEAVSVDLPLARLAYEGLAAGLGVPHKEK 294 (296)
T ss_dssp CS-----CCCT-TSTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTCCC---
T ss_pred hh-----hhhc-CCCCCchhhhhhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCcccc
Confidence 22 2344 7889999 999999999999999999999999999999999999998553
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-43 Score=327.68 Aligned_cols=284 Identities=15% Similarity=0.182 Sum_probs=244.7
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPN 123 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~ 123 (355)
.+|||+|||+|.||.+|+.+|.++||+|++|||++++++.+.+.|+..++++.++++++|+||+|+|++.++++++.. .
T Consensus 8 ~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~-~ 86 (306)
T 3l6d_A 8 FEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAALSASPATIFVLLDNHATHEVLGM-P 86 (306)
T ss_dssp CSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTCEECSSHHHHHHHSSEEEECCSSHHHHHHHHTS-T
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEeCCHHHHHHHhcc-c
Confidence 468999999999999999999999999999999999999998888888899999999999999999998889998851 1
Q ss_pred ccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecCCHHHHHHH
Q 018506 124 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAA 203 (355)
Q Consensus 124 ~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg~~~~~~~v 203 (355)
++ .. ..++++|||+||+.|...+++.+.+.+ . +.+|+++|++|+++....+.+++++||+++.++++
T Consensus 87 ~l-~~--~~~g~ivid~st~~~~~~~~l~~~~~~------~----g~~~vdapv~g~~~~~~~~~~~i~~gg~~~~~~~~ 153 (306)
T 3l6d_A 87 GV-AR--ALAHRTIVDYTTNAQDEGLALQGLVNQ------A----GGHYVKGMIVAYPRNVGHRESHSIHTGDREAFEQH 153 (306)
T ss_dssp TH-HH--HTTTCEEEECCCCCTTHHHHHHHHHHH------T----TCEEEEEEEESCGGGTTCTTCEEEEEECHHHHHHH
T ss_pred ch-hh--ccCCCEEEECCCCCHHHHHHHHHHHHH------c----CCeEEecccccCcccccCCceEEEEcCCHHHHHHH
Confidence 22 21 125689999999999999999887753 2 37899999999988777777899999999999999
Q ss_pred HHHHHHcCCCeEEe--CC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcC--CCcccccCCCCC
Q 018506 204 KPLFLSMGKNTIYC--GG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS--ARCWSSDSYNPV 278 (355)
Q Consensus 204 ~~ll~~~g~~~~~~--g~-~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~--~~s~~~~~~~~~ 278 (355)
+++|+.++.+++++ |+ +|.+..+| .+.+.++++++|++.++++.|+|++++.++++.+. +.+|....+.+
T Consensus 154 ~~ll~~lg~~~~~~~~g~~~g~g~~~k----~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~~~~s~~~~~~~~- 228 (306)
T 3l6d_A 154 RALLEGLAGHTVFLPWDEALAFATVLH----AHAFAAMVTFFEAVGAGDRFGLPVSKTARLLLETSRFFVADALEEAVR- 228 (306)
T ss_dssp HHHHHTTCSEEEECCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHhcCCEEEecCCCCccHHHHHH----HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcccHHHHHHHH-
Confidence 99999998889999 87 89999999 34456788999999999999999999999999875 46665443321
Q ss_pred CCcccCCCCCCCCCCC-cchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHHHHHHHhcCC
Q 018506 279 PGVMEGVPASRNYGGG-FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGK 352 (355)
Q Consensus 279 ~~~~~~~~~~~~~~~~-~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~~~ 352 (355)
++.+++|.++ |+++++.||++++++.+++.|+++|+.+++.++|+.+.++|+|++||+++++++.+..
T Consensus 229 ------~~~~~~~~~~~~~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~a~~~~~~~~~ 297 (306)
T 3l6d_A 229 ------RLETQDFKGDQARLDVHADAFAHIAQSLHAQGVWTPVFDAVCQVVQRAAAMGYGDQDIAATTKSFAREQ 297 (306)
T ss_dssp ------HHHHTCCCTTSSBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTTTTSBGGGGGGGGC---
T ss_pred ------HHhcCCCCCCcccHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhHH
Confidence 2335688875 7899999999999999999999999999999999999999999999999999765543
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-41 Score=312.21 Aligned_cols=295 Identities=52% Similarity=0.851 Sum_probs=258.4
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCCcc
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGL 125 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~~~ 125 (355)
|||+|||+|.||.+++..|.++||+|++|||++++++.+.+.|+..++++.++++++|+||+|+|.+.+++.++..+.++
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~~vp~~~~~~~v~~~~~~~ 80 (296)
T 2gf2_A 1 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGI 80 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTSG
T ss_pred CeEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHhCchhH
Confidence 68999999999999999999999999999999999999988888888899999999999999999888999998876554
Q ss_pred ccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecCCHHHHHHHHH
Q 018506 126 LQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKP 205 (355)
Q Consensus 126 l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg~~~~~~~v~~ 205 (355)
+... .++++||++++..+...+.+.+.+.+ . +..|++.|+.+++..+..+.+.++.+++++.++.+++
T Consensus 81 ~~~l--~~~~~vv~~s~~~~~~~~~~~~~~~~------~----g~~~~~~p~~~g~~~a~~~~~~~~~~~~~~~~~~v~~ 148 (296)
T 2gf2_A 81 LKKV--KKGSLLIDSSTIDPAVSKELAKEVEK------M----GAVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQE 148 (296)
T ss_dssp GGTC--CTTCEEEECSCCCHHHHHHHHHHHHH------T----TCEEEECCEESHHHHHHHTCEEEEEESCGGGHHHHHH
T ss_pred HhcC--CCCCEEEECCCCCHHHHHHHHHHHHH------c----CCEEEEcCCCCChhHHhcCcEEEEeCCCHHHHHHHHH
Confidence 4321 25679999999999888877776653 1 2689999999888777888888999999999999999
Q ss_pred HHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcccccCCCCCCCcccCC
Q 018506 206 LFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGV 285 (355)
Q Consensus 206 ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 285 (355)
+|+.+|.+++++++.|.+.++|+++|.+....+.++.|++.++++.|++++++.+++..+.+.+|......+.++++...
T Consensus 149 l~~~~g~~~~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s 228 (296)
T 2gf2_A 149 LLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGV 228 (296)
T ss_dssp HHTTTEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCBHHHHHSCSSTTTCSSS
T ss_pred HHHHHcCCeEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCcccCHHHHhcCCcccccccc
Confidence 99999999999999999999999999988888999999999999999999999999998776666655444556665544
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHHHHHHHhcCC
Q 018506 286 PASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGK 352 (355)
Q Consensus 286 ~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~~~ 352 (355)
+..++|.++|.++.+.||++.++++++++|+++|+++.++++++.+.++|+|++||+++++++.+.+
T Consensus 229 ~~~~~~~~g~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~ 295 (296)
T 2gf2_A 229 PSANNYQGGFGTTLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQFLREEE 295 (296)
T ss_dssp GGGGTTCSSSBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCTTSBGGGHHHHHSCCC
T ss_pred hhccCCCCCCchHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhcc
Confidence 5567888899999999999999999999999999999999999999999999999999999775543
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-39 Score=301.37 Aligned_cols=286 Identities=38% Similarity=0.551 Sum_probs=247.8
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCCcc
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGL 125 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~~~ 125 (355)
|||+|||+|.||..++..|.+.||+|++|||++++.+.+.+.|+....++.++++++|+||+|+|++.+++.++....++
T Consensus 6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~v~~~~~~~~~~~~~~~l 85 (299)
T 1vpd_A 6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI 85 (299)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHhCcchH
Confidence 79999999999999999999999999999999999999988888888899999999999999999888889888322222
Q ss_pred ccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecCCHHHHHHHHH
Q 018506 126 LQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKP 205 (355)
Q Consensus 126 l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg~~~~~~~v~~ 205 (355)
... ..++++||+++++.+...+.+.+.+.+ . +.+|+++|+++++..+..+...++++++++.++.+++
T Consensus 86 ~~~--l~~~~~vv~~s~~~~~~~~~l~~~~~~------~----g~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (299)
T 1vpd_A 86 IEG--AKPGTVLIDMSSIAPLASREISDALKA------K----GVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYD 153 (299)
T ss_dssp HHH--CCTTCEEEECSCCCHHHHHHHHHHHHT------T----TCEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHH
T ss_pred hhc--CCCCCEEEECCCCCHHHHHHHHHHHHH------c----CCeEEEecCCCCHhHHhcCCEEEEeCCCHHHHHHHHH
Confidence 221 125679999999999877888887753 1 2789999999888888888888999999999999999
Q ss_pred HHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcccccCCCCCCCcccCC
Q 018506 206 LFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGV 285 (355)
Q Consensus 206 ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 285 (355)
+|+.+|.+++++++.+.+.+.|+++|.+.+.++.++.|++.++++.|++++++.+++..+...+|..... .+.+
T Consensus 154 ll~~~g~~~~~~~~~~~~~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~--~~~~---- 227 (299)
T 1vpd_A 154 LMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAK--APMV---- 227 (299)
T ss_dssp HHHTTEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCCHHHHHH--HHHH----
T ss_pred HHHHHcCCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCCHHHHHh--hhHh----
Confidence 9999999999999999999999999999999999999999999999999999999999877665543211 1222
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHHHHHHHhc
Q 018506 286 PASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 350 (355)
Q Consensus 286 ~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~ 350 (355)
..++|.++++++...||++.++++++++|+++|+++.++++++.+.+.|+|++||+++++++.+
T Consensus 228 -l~~~~~~g~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~ 291 (299)
T 1vpd_A 228 -MDRNFKPGFRIDLHIKDLANALDTSHGVGAQLPLTAAVMEMMQALRADGHGNDDHSALACYYEK 291 (299)
T ss_dssp -HTTCCCCSSBHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGHHHHHHH
T ss_pred -hcCCCCCCCChHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Confidence 2346778899999999999999999999999999999999999999999999999999998754
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-39 Score=295.20 Aligned_cols=287 Identities=36% Similarity=0.548 Sum_probs=247.8
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCCc
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNG 124 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~~ 124 (355)
+|||+|||+|.||..++..|.+.||+|++|||++++.+.+.+.|+...+++.++++++|+||+|+|.+.+++.++....+
T Consensus 4 ~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~ 83 (301)
T 3cky_A 4 SIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIFTSLPNAGIVETVMNGPGG 83 (301)
T ss_dssp CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTC
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHcCcch
Confidence 58999999999999999999999999999999999999998888888889999999999999999988889988853222
Q ss_pred cccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecCCHHHHHHHH
Q 018506 125 LLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAK 204 (355)
Q Consensus 125 ~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg~~~~~~~v~ 204 (355)
+... ..++++|++++++.|...+.+.+.+.+ . +.+|++.|+.+++..+..+.++++++++++.++.++
T Consensus 84 l~~~--l~~~~~vv~~~~~~~~~~~~l~~~~~~------~----g~~~~~~p~~~~~~~a~~g~~~~~~~g~~~~~~~v~ 151 (301)
T 3cky_A 84 VLSA--CKAGTVIVDMSSVSPSSTLKMAKVAAE------K----GIDYVDAPVSGGTKGAEAGTLTIMVGASEAVFEKIQ 151 (301)
T ss_dssp HHHH--SCTTCEEEECCCCCHHHHHHHHHHHHH------T----TCEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHH
T ss_pred Hhhc--CCCCCEEEECCCCCHHHHHHHHHHHHH------c----CCeEEEccCCCCHHHHHcCCeEEEECCCHHHHHHHH
Confidence 2221 125679999999998888888887753 1 268889999988877778888888999999999999
Q ss_pred HHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcccccCCCCCC-Cccc
Q 018506 205 PLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVP-GVME 283 (355)
Q Consensus 205 ~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~-~~~~ 283 (355)
++|+.+|.+++++++.|.+.+.|+++|.+...+..++.|++.++++.|++++++.+++..+...+|..... .+ .+
T Consensus 152 ~ll~~~g~~~~~~~~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-- 227 (301)
T 3cky_A 152 PVLSVIGKDIYHVGDTGAGDAVKIVNNLLLGCNMASLAEALVLGVKCGLKPETMQEIIGKSSGRSYAMEAK--MEKFI-- 227 (301)
T ss_dssp HHHHHHEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCBHHHHHH--CCCCC--
T ss_pred HHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCHHHHHh--hhhhh--
Confidence 99999999888999999999999999999999999999999999999999999999999876555533221 12 22
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHHHHHHHhc
Q 018506 284 GVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 350 (355)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~ 350 (355)
..++|.+++.++.+.||++.++++++++|+++|+++.++++++++.+.|+|+.||+++++.+.+
T Consensus 228 ---l~~~~~~g~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~ 291 (301)
T 3cky_A 228 ---MSGDFAGGFAMDLQHKDLGLALEAGKEGNVPLPMTAMATQIFEGGRAMGLGREDMSAVIKVWEQ 291 (301)
T ss_dssp ---CTCCCSSSSBHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHHH
T ss_pred ---hcCCCCCCccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Confidence 2457788999999999999999999999999999999999999999999999999999997754
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-39 Score=295.95 Aligned_cols=287 Identities=33% Similarity=0.503 Sum_probs=246.7
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPN 123 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~ 123 (355)
+||||+|||+|.||..++..|.+.||+|++|| ++++++.+.+.|+....++.++++++|+||+|+|.+.+++.++....
T Consensus 2 ~~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~ 80 (295)
T 1yb4_A 2 NAMKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVADELLSLGAVNVETARQVTEFADIIFIMVPDTPQVEDVLFGEH 80 (295)
T ss_dssp --CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHHTTTCBCCSSHHHHHHTCSEEEECCSSHHHHHHHHHSTT
T ss_pred CCCEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHHHcCCcccCCHHHHHhcCCEEEEECCCHHHHHHHHhCch
Confidence 45899999999999999999999999999999 99999988888888888999999999999999999888889887322
Q ss_pred ccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecCCHHHHHHH
Q 018506 124 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAA 203 (355)
Q Consensus 124 ~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg~~~~~~~v 203 (355)
++... ..++++|++++++.|...+.+.+.+.+ . +.+|++.|+++++..+..+.+.++++++++.++.+
T Consensus 81 ~l~~~--l~~~~~vv~~s~~~~~~~~~l~~~~~~------~----g~~~~~~p~~~~~~~a~~g~~~~~~~~~~~~~~~~ 148 (295)
T 1yb4_A 81 GCAKT--SLQGKTIVDMSSISPIETKRFAQRVNE------M----GADYLDAPVSGGEIGAREGTLSIMVGGEQKVFDRV 148 (295)
T ss_dssp SSTTS--CCTTEEEEECSCCCHHHHHHHHHHHHT------T----TEEEEECCEESHHHHHHHTCEEEEEESCHHHHHHH
T ss_pred hHhhc--CCCCCEEEECCCCCHHHHHHHHHHHHH------c----CCeEEEccCCCCHHHHHcCCeEEEECCCHHHHHHH
Confidence 23222 125689999999998888888887753 1 27889999998887777888888999999999999
Q ss_pred HHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcccccCCCCCCCccc
Q 018506 204 KPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVME 283 (355)
Q Consensus 204 ~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 283 (355)
+++|+.+|.+++++++.+.+.+.|+++|.+...++.++.|++.++++.|++++++.+++..+...+|..... .+.
T Consensus 149 ~~ll~~~g~~~~~~~~~~~~~~~Kl~~n~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~--~~~--- 223 (295)
T 1yb4_A 149 KPLFDILGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGADPVRVRQALMGGFASSRILEVH--GER--- 223 (295)
T ss_dssp HHHHHHHEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTSSSSCBHHHHHH--HHH---
T ss_pred HHHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCHHHHHh--hHH---
Confidence 999999999899999999999999999999999999999999999999999999999998877655432211 111
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHHHHHHHhc
Q 018506 284 GVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 350 (355)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~ 350 (355)
+..++|.+++.++.+.||++.+++.+++.|+++|++++++++++++.+.|+|+.||+++++++.+
T Consensus 224 --~~~~~~~~g~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~ 288 (295)
T 1yb4_A 224 --MINRTFEPGFKIALHQKDLNLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSAMVQALEL 288 (295)
T ss_dssp --HHTTCCCCSSBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHHH
T ss_pred --HhcCCCCCCCchHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 22457888999999999999999999999999999999999999999999999999999997754
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=296.53 Aligned_cols=285 Identities=29% Similarity=0.472 Sum_probs=248.2
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCCc
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNG 124 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~~ 124 (355)
+|||+|||+|.||..++..|.+.|++|++|||++++++.+.+.|+....++.++++++|+||+|+|++.+++.++....+
T Consensus 30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~DvVi~av~~~~~~~~v~~~~~~ 109 (316)
T 2uyy_A 30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSG 109 (316)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHHTTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTC
T ss_pred CCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHcCCEEcCCHHHHHhcCCEEEEeCCCHHHHHHHHcCchh
Confidence 58999999999999999999999999999999999999988888877888999999999999999988899998887653
Q ss_pred cccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecCCHHHHHHHH
Q 018506 125 LLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAK 204 (355)
Q Consensus 125 ~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg~~~~~~~v~ 204 (355)
++.. ..++++||+++++.+...+.+.+.+.. . +..|+++|+++++.....+.+.++++++++.++.++
T Consensus 110 ~~~~--l~~~~~vv~~s~~~~~~~~~l~~~~~~------~----~~~~v~~p~~g~~~~~~~g~~~~~~~g~~~~~~~v~ 177 (316)
T 2uyy_A 110 VLQG--IRPGKCYVDMSTVDADTVTELAQVIVS------R----GGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCS 177 (316)
T ss_dssp GGGG--CCTTCEEEECSCCCHHHHHHHHHHHHH------T----TCEEEECCEESCHHHHHHTCEEEEEEECHHHHHHTH
T ss_pred Hhhc--CCCCCEEEECCCCCHHHHHHHHHHHHH------c----CCEEEEcCccCChhHHhhCCEEEEeCCCHHHHHHHH
Confidence 4332 125679999999999888888887753 1 267899999998888888988888899999999999
Q ss_pred HHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcccccCCCCCCCcccC
Q 018506 205 PLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEG 284 (355)
Q Consensus 205 ~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 284 (355)
++|+.+|.+++++++++.+.+.|++.|.+.+....++.|++.++++.|++++++.+++..+...++..... .+.++
T Consensus 178 ~ll~~~g~~~~~~~~~~~~~~~K~~~n~~~~~~~~~~~Ea~~la~~~G~~~~~~~~~~~~~~~~s~~~~~~--~~~~l-- 253 (316)
T 2uyy_A 178 SCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQK--CQNIL-- 253 (316)
T ss_dssp HHHHHHEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTCCHHHHHH--HHHHH--
T ss_pred HHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCHHHHHh--hHHhh--
Confidence 99999999999999999999999999999999999999999999999999999999999876655533211 12222
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHHHHHHH
Q 018506 285 VPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 348 (355)
Q Consensus 285 ~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g~g~~d~~~~~~~~ 348 (355)
.++|.++++++.+.||++.+++++++.|+++|++++++++++++.+.|+|++||+++++++
T Consensus 254 ---~~~~~~g~~~~~~~kd~~~~~~~a~~~gv~~p~~~~v~~~~~~a~~~g~g~~d~~~~~~~~ 314 (316)
T 2uyy_A 254 ---QGNFKPDFYLKYIQKDLRLAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYRAY 314 (316)
T ss_dssp ---HTCCCCSSBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGGGGT
T ss_pred ---cCCCCCCCcHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHhcCCCccCHHHHHHHH
Confidence 3467889999999999999999999999999999999999999999999999999998854
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=302.51 Aligned_cols=275 Identities=15% Similarity=0.252 Sum_probs=226.8
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCC-CcEEEEeCCh-------hHHHHHHhCCCCCCC-CHHHHhhcCCEEEEeCCCchH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNC-------NVMKMFSDMGVPTKE-TPFEVAEASDVVITMLPSSSH 114 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G-~~V~v~dr~~-------~~~~~l~~~g~~~~~-s~~e~~~~aDiVi~~v~~~~~ 114 (355)
.+|||+|||+|.||.++|.+|+++| |+|++|||++ +..+.+.+.|+ ++ ++.++++++|+||+|||++..
T Consensus 23 M~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~--~~~s~~e~~~~aDvVi~avp~~~~ 100 (317)
T 4ezb_A 23 MMTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV--EPLDDVAGIACADVVLSLVVGAAT 100 (317)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC--EEESSGGGGGGCSEEEECCCGGGH
T ss_pred cCCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC--CCCCHHHHHhcCCEEEEecCCHHH
Confidence 3589999999999999999999999 9999999998 56667777777 66 889999999999999998765
Q ss_pred HHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEec
Q 018506 115 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVG 194 (355)
Q Consensus 115 ~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~g 194 (355)
.+. +..+.+.+ .++++|||+||+.|.+.+.+.+.+.+ . +.+|+++|++|+ ..+..+++++++|
T Consensus 101 ~~~-~~~i~~~l-----~~~~ivv~~st~~p~~~~~~~~~l~~------~----g~~~~d~pv~g~-~~a~~g~l~i~vg 163 (317)
T 4ezb_A 101 KAV-AASAAPHL-----SDEAVFIDLNSVGPDTKALAAGAIAT------G----KGSFVEGAVMAR-VPPYAEKVPILVA 163 (317)
T ss_dssp HHH-HHHHGGGC-----CTTCEEEECCSCCHHHHHHHHHHHHT------S----SCEEEEEEECSC-STTTGGGSEEEEE
T ss_pred HHH-HHHHHhhc-----CCCCEEEECCCCCHHHHHHHHHHHHH------c----CCeEEeccCCCC-chhhcCCEEEEEe
Confidence 554 34333333 25679999999999999999888753 1 278999999986 4456778899999
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcC-CCcccc
Q 018506 195 GSEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS-ARCWSS 272 (355)
Q Consensus 195 g~~~~~~~v~~ll~~~g~~~~~~g~-~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~-~~s~~~ 272 (355)
|+++ +.++++|+.+|++++++|+ +|.++++|+++|.+.+..+++++|++.++++.|+|++ +++.+..+. +.+|.
T Consensus 164 g~~~--~~~~~ll~~~g~~v~~~g~~~g~a~~~Kl~~N~~~~~~~~~~~E~~~la~~~Gid~~-~~~~l~~~~~~~~~~- 239 (317)
T 4ezb_A 164 GRRA--VEVAERLNALGMNLEAVGETPGQASSLKMIRSVMIKGVEALLIEALSSAERAGVTER-ILDSVQETFPGLDWR- 239 (317)
T ss_dssp STTH--HHHHHHHHTTTCEEEEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHHHSTTSCHH-
T ss_pred CChH--HHHHHHHHHhCCCeEEeCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH-HHHHHHhcCccccHH-
Confidence 9877 8999999999999999998 8999999999999999999999999999999999995 555555543 23331
Q ss_pred cCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHH----HHHHHHCCCC-CCcHHHHHHH
Q 018506 273 DSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDI----YAKLCENGHD-SKDFSCVFQH 347 (355)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~----~~~~~~~g~g-~~d~~~~~~~ 347 (355)
.. .+ ++..++|.++|. +.||++.+++++++.|+++|+++++.++ ++...+.|++ ++||+++++.
T Consensus 240 -~~--~~-----~~~~~~~~~g~~---~~KDl~~~~~~a~~~g~~~pl~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~ 308 (317)
T 4ezb_A 240 -DV--AD-----YYLSRTFEHGAR---RVTEMTEAAETIESFGLNAPMSRAACETIAAAHAAMKDQGLSVNDGYRGFVPV 308 (317)
T ss_dssp -HH--HH-----HHHHHHHHHHHH---HHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHTTSSCCTTSHHHHHHHH
T ss_pred -Hh--hh-----hhhcCCCCCCcc---hHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 11 01 122446666665 5899999999999999999999999999 8888889997 9999999998
Q ss_pred HhcCC
Q 018506 348 YYGGK 352 (355)
Q Consensus 348 ~~~~~ 352 (355)
+....
T Consensus 309 ~~~~~ 313 (317)
T 4ezb_A 309 LARRL 313 (317)
T ss_dssp HHHHC
T ss_pred HHhhc
Confidence 87554
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-38 Score=290.35 Aligned_cols=281 Identities=29% Similarity=0.444 Sum_probs=241.4
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCCc
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNG 124 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~~ 124 (355)
||||+|||+|.||..++..|.+ ||+|++|||++++.+.+.+.|+..++ +.++++++|+||+|+|++..++.++..+.+
T Consensus 1 M~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~D~vi~~v~~~~~~~~v~~~l~~ 78 (289)
T 2cvz_A 1 MEKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEEFGSEAV-PLERVAEARVIFTCLPTTREVYEVAEALYP 78 (289)
T ss_dssp -CCEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHHHCCEEC-CGGGGGGCSEEEECCSSHHHHHHHHHHHTT
T ss_pred CCeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHCCCcccC-HHHHHhCCCEEEEeCCChHHHHHHHHHHHh
Confidence 4799999999999999999999 99999999999999888876766665 778888999999999988778888755433
Q ss_pred cccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecCCHHHHHHHH
Q 018506 125 LLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAK 204 (355)
Q Consensus 125 ~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg~~~~~~~v~ 204 (355)
.+ .++++|+++|+..+...+.+.+.+.+ . +.+|+++|+++++.....+.+.++++++++.++.++
T Consensus 79 ~l-----~~~~~vv~~s~~~~~~~~~l~~~~~~------~----g~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 143 (289)
T 2cvz_A 79 YL-----REGTYWVDATSGEPEASRRLAERLRE------K----GVTYLDAPVSGGTSGAEAGTLTVMLGGPEEAVERVR 143 (289)
T ss_dssp TC-----CTTEEEEECSCCCHHHHHHHHHHHHT------T----TEEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHG
T ss_pred hC-----CCCCEEEECCCCCHHHHHHHHHHHHH------c----CCEEEEecCCCChhHHhhCCeEEEECCCHHHHHHHH
Confidence 33 25689999999998888888887753 1 267889999888887888888888899999999999
Q ss_pred HHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcccccCCCCCC-Cccc
Q 018506 205 PLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVP-GVME 283 (355)
Q Consensus 205 ~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~-~~~~ 283 (355)
++| .+|.+++++++.+.+.+.|+++|.+...+..++.|++.++++.|++++++.+++..+...++..... .+ .+
T Consensus 144 ~ll-~~g~~~~~~~~~~~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~--~~~~~-- 218 (289)
T 2cvz_A 144 PFL-AYAKKVVHVGPVGAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENL--IPQRV-- 218 (289)
T ss_dssp GGC-TTEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCBHHHHHT--HHHHT--
T ss_pred HHH-hhcCCeEEcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHccCCCCHHHHHh--ccchh--
Confidence 999 9998888999999999999999999999999999999999999999999999998876555433211 11 12
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHHHHHHHhc
Q 018506 284 GVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 350 (355)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~ 350 (355)
..+++.++++++.+.||++.+++.++++|+++|++++++++++++.+.|+|+.||+++++.+.+
T Consensus 219 ---l~~~~~~g~~~~~~~kd~~~~~~~a~~~gv~~p~~~~v~~~~~~a~~~g~~~~d~~~~~~~~~~ 282 (289)
T 2cvz_A 219 ---LTRAFPKTFALGLLVKDLGIAMGVLDGEKAPSPLLRLAREVYEMAKRELGPDADHVEALRLLER 282 (289)
T ss_dssp ---TTSCCCCSSBHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHCTTSBGGGGHHHHHH
T ss_pred ---hcCCCCCCcChHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 2457788999999999999999999999999999999999999999999999999999997754
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-38 Score=294.77 Aligned_cols=267 Identities=20% Similarity=0.239 Sum_probs=221.6
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCC--hhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHh
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVN--CNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVY 119 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~--~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl 119 (355)
+.+|||+|||+|.||.+|+.+|+++|| +|++|||+ +++.+.+.+.|+..++++.++++++|+||+|||++...+ ++
T Consensus 22 ~~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~-~~ 100 (312)
T 3qsg_A 22 SNAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVAEVAGECDVIFSLVTAQAALE-VA 100 (312)
T ss_dssp ---CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTTCEECSCHHHHHHHCSEEEECSCTTTHHH-HH
T ss_pred CCCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCCCEEeCCHHHHHhcCCEEEEecCchhHHH-HH
Confidence 457899999999999999999999999 99999997 588888888898888999999999999999999875544 45
Q ss_pred cCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecCCHHH
Q 018506 120 NGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDA 199 (355)
Q Consensus 120 ~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg~~~~ 199 (355)
.++.+.+ .++++|||+||+.|.+.+.+.+.+.+. .. +.+|+++|++|+.... .+.+++++||+++
T Consensus 101 ~~l~~~l-----~~~~ivvd~st~~~~~~~~~~~~~~~~----~~----g~~~vd~pv~g~~~~~-~g~l~i~vgg~~~- 165 (312)
T 3qsg_A 101 QQAGPHL-----CEGALYADFTSCSPAVKRAIGDVISRH----RP----SAQYAAVAVMSAVKPH-GHRVPLVVDGDGA- 165 (312)
T ss_dssp HHHGGGC-----CTTCEEEECCCCCHHHHHHHHHHHHHH----CT----TCEEEEEEECSCSTTT-GGGSEEEEESTTH-
T ss_pred HhhHhhc-----CCCCEEEEcCCCCHHHHHHHHHHHHhh----cC----CCeEEeccccCCchhh-cCCEEEEecCChH-
Confidence 4433333 256799999999999999988877541 11 2789999999876544 7788999999877
Q ss_pred HHHHHHHHHHcCCCeEEeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcccccCCCCC
Q 018506 200 YQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPV 278 (355)
Q Consensus 200 ~~~v~~ll~~~g~~~~~~g~-~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~ 278 (355)
+.++++|+.+|++++++++ +|++.++|+++|.+.+..+++++|++.++++.|+|+ ++++.+..+. .++....+.
T Consensus 166 -~~~~~ll~~~g~~~~~~g~~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~-~~~~~l~~~~-~~~~~~~~~-- 240 (312)
T 3qsg_A 166 -RRFQAAFTLYGCRIEVLDGEVGGAALLKMCRSAVLKGLEALFLEALAAAEKMGLAD-RVLASLDASF-PEHHLRDLA-- 240 (312)
T ss_dssp -HHHHHHHHTTTCEEEECCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHH-HHHHHHHHHS-GGGTHHHHH--
T ss_pred -HHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH-HHHHHHHhcC-CchhHHHhh--
Confidence 8999999999999999998 899999999999999999999999999999999999 5778887764 233222111
Q ss_pred CCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCC
Q 018506 279 PGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDS 338 (355)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g~g~ 338 (355)
+ .+..++|.++|.+ .||++.+++++++.|+++|+++.+.++|+++.+.|+++
T Consensus 241 ~-----~~~~~~~~~g~~~---~KDl~~~~~~a~~~g~~~pl~~~~~~~~~~~~~~g~~~ 292 (312)
T 3qsg_A 241 L-----YLVERNLEHADRR---AHELGEVAATLCSVGVEPLVAEAGYRRLTRVAQVRAAL 292 (312)
T ss_dssp H-----HHHHHHHHHHHHH---HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred h-----HhhcCCCCcccch---HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhcCCcc
Confidence 1 1234567777764 79999999999999999999999999999999998766
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-36 Score=281.42 Aligned_cols=280 Identities=23% Similarity=0.360 Sum_probs=225.6
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcC---CEEEEeCCCchHHHHHh
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEAS---DVVITMLPSSSHVLDVY 119 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~a---DiVi~~v~~~~~~~~vl 119 (355)
+++|||+|||+|.||.+||.+|+++||+|++|||++++++.+.+.|+..+++++++++.+ |+||+|||++ .+++++
T Consensus 20 m~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~a~~~DvVi~~vp~~-~v~~vl 98 (358)
T 4e21_A 20 FQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWLMVPAA-VVDSML 98 (358)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCBCCSSHHHHHHHSCSSCEEEECSCGG-GHHHHH
T ss_pred hcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCEEeCCHHHHHhcCCCCCEEEEeCCHH-HHHHHH
Confidence 345899999999999999999999999999999999999999999999999999999988 9999999988 889988
Q ss_pred cCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecCCHHH
Q 018506 120 NGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDA 199 (355)
Q Consensus 120 ~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg~~~~ 199 (355)
..+.+.+. ++++|||+||+.|...+++.+.+.+ . +++|+++|++|++..+..|+ .+|+||++++
T Consensus 99 ~~l~~~l~-----~g~iiId~st~~~~~~~~~~~~l~~------~----g~~~vdapVsGg~~~a~~G~-~im~GG~~~a 162 (358)
T 4e21_A 99 QRMTPLLA-----ANDIVIDGGNSHYQDDIRRADQMRA------Q----GITYVDVGTSGGIFGLERGY-CLMIGGEKQA 162 (358)
T ss_dssp HHHGGGCC-----TTCEEEECSSCCHHHHHHHHHHHHT------T----TCEEEEEEEECGGGHHHHCC-EEEEESCHHH
T ss_pred HHHHhhCC-----CCCEEEeCCCCChHHHHHHHHHHHH------C----CCEEEeCCCCCCHHHHhcCC-eeeecCCHHH
Confidence 76544442 5679999999999999998887753 1 37899999999999999998 9999999999
Q ss_pred HHHHHHHHHHcC--------------------CCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------
Q 018506 200 YQAAKPLFLSMG--------------------KNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSL-------- 251 (355)
Q Consensus 200 ~~~v~~ll~~~g--------------------~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~-------- 251 (355)
++.++++|+.++ ..++++|+.|+|+.+|+++|.+.+..+++++|++.++++.
T Consensus 163 ~~~~~~ll~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~i~~~aE~~~la~~a~~~~~~~~ 242 (358)
T 4e21_A 163 VERLDPVFRTLAPGIGAAPRTPGREKREGTAELGYLHCGPSGAGHFVKMVHNGIEYGLMAAYAEGLNILHHANAGKEGQG 242 (358)
T ss_dssp HHHTHHHHHHHSCCGGGSCCCTTGGGCCSSGGGTEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC-----
T ss_pred HHHHHHHHHHhccccccCcccccccccccccccceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 999999999999 5789999999999999999999999999999999999998
Q ss_pred ----------------CCCHHHHHHHHHhcC-CCcccccCCCCCCCcccCCCCCCCCCCCc-chhhHHHH---HHHHHHH
Q 018506 252 ----------------GISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGVPASRNYGGGF-ASKLMAKD---LNLALAS 310 (355)
Q Consensus 252 ----------------Gi~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~kd---~~~~~~~ 310 (355)
|+|.+++.++++.++ ..||..+... ..+... |.+ .+....|| .++++..
T Consensus 243 ~~~~~~~~~~~~~~~~~~d~~~i~~~~~~g~~~~s~~l~~~~---~~~~~~-------p~~~~~~~~~~d~g~~r~~~~~ 312 (358)
T 4e21_A 243 ADAETAPLRNPDFYRYDLDLADITEVWRRGSVISSWLLDLSA---TALLDS-------PDLQEFQGRVSDSGEGRWTVAA 312 (358)
T ss_dssp ---------CGGGCCCCCCHHHHHHHHTTTSTTCBHHHHHHH---HHHHHC-------TTCTTC--CCCCCSHHHHHHHH
T ss_pred ccccccccccchhcccCCCHHHHHHHHhCccHHHHHHHHHHH---HHHhhC-------CChHHHHHHHHhcCcHHHHHHH
Confidence 899999999999987 6888765321 111111 111 01122223 3679999
Q ss_pred HHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHH-HHHH---HhcCCC
Q 018506 311 AKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSC-VFQH---YYGGKD 353 (355)
Q Consensus 311 a~~~gv~~pi~~~~~~~~~~~~~~g~g~~d~~~-~~~~---~~~~~~ 353 (355)
|.+.|+|+|++.++ ++.+...+ ++.+++. ++.. +|+++.
T Consensus 313 A~~~gvp~p~~~~a--l~~~~~s~--~~~~~~~~l~~a~r~~fG~h~ 355 (358)
T 4e21_A 313 AIDEGVPAHVLSSA--LYERFSSR--GEDDFANRLLSAMRYEFGGHR 355 (358)
T ss_dssp HHHHTCCCHHHHHH--HHHHHHHT--TTTHHHHHHHHHHC-------
T ss_pred HHHcCCChHHHHHH--HHHHHHHC--CCcccHHHHHHHHHHhcCCCC
Confidence 99999999999875 45555553 5556543 5543 455543
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-35 Score=287.48 Aligned_cols=266 Identities=18% Similarity=0.249 Sum_probs=216.6
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCC---CC--CCCCHHHHhh---cCCEEEEeCCCchH
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG---VP--TKETPFEVAE---ASDVVITMLPSSSH 114 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g---~~--~~~s~~e~~~---~aDiVi~~v~~~~~ 114 (355)
+.+|+|||||+|.||.+||.+|+++||+|++|||++++++.+.+.+ .. .+.+++|+++ .+|+||++||.++.
T Consensus 2 ~~~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~Vp~~~~ 81 (484)
T 4gwg_A 2 NAQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQA 81 (484)
T ss_dssp -CCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECSCSSHH
T ss_pred CCCCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEecCChHH
Confidence 4578999999999999999999999999999999999999988753 22 3678999887 49999999999888
Q ss_pred HHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEec
Q 018506 115 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVG 194 (355)
Q Consensus 115 ~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~g 194 (355)
+++++.++.+.+. ++++|||+||+.|..+.++.+.+.+ . +++|+++|++|++..+..|+ .+|+|
T Consensus 82 v~~vl~~l~~~L~-----~g~iIId~st~~~~~t~~~~~~l~~------~----Gi~fvd~pVsGg~~gA~~G~-~im~G 145 (484)
T 4gwg_A 82 VDDFIEKLVPLLD-----TGDIIIDGGNSEYRDTTRRCRDLKA------K----GILFVGSGVSGGEEGARYGP-SLMPG 145 (484)
T ss_dssp HHHHHHHHGGGCC-----TTCEEEECSCCCHHHHHHHHHHHHH------T----TCEEEEEEEESHHHHHHHCC-EEEEE
T ss_pred HHHHHHHHHHhcC-----CCCEEEEcCCCCchHHHHHHHHHHh------h----ccccccCCccCCHHHHhcCC-eeecC
Confidence 9998876555543 5679999999999888888777653 2 37999999999999999999 99999
Q ss_pred CCHHHHHHHHHHHHHcCCCe-------EEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHH---H
Q 018506 195 GSEDAYQAAKPLFLSMGKNT-------IYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS-LGISASTLTKIL---N 263 (355)
Q Consensus 195 g~~~~~~~v~~ll~~~g~~~-------~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~-~Gi~~~~~~~~~---~ 263 (355)
|++++++.++++|+.++.++ +++|+.|+|+.+||++|.+.+..+++++|++.++++ .|+|++++.+++ +
T Consensus 146 G~~ea~~~v~pll~~ig~~v~~~~~~~~~~G~~Gag~~vKmv~N~i~~~~m~~iaEa~~l~~~~~Gld~~~l~~v~~~w~ 225 (484)
T 4gwg_A 146 GNKEAWPHIKTIFQGIAAKVGTGEPCCDWVGDEGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGMAQDEMAQAFEDWN 225 (484)
T ss_dssp ECGGGHHHHHHHHHHHSCBCTTSCBSBCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhcCcccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHc
Confidence 99999999999999999887 899999999999999999999999999999999999 999999998886 5
Q ss_pred hcCCCcccccCCCCCCCcccCCCCCCCCCCCcchhhHH-----HHH-HHHHHHHHHhCCCCh-HHHHHHHHHHHH
Q 018506 264 SSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMA-----KDL-NLALASAKEVGVDCP-LTSQAQDIYAKL 331 (355)
Q Consensus 264 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----kd~-~~~~~~a~~~gv~~p-i~~~~~~~~~~~ 331 (355)
.+.+.||..+...+. +..+|+.+++.++... |+. .+..+.|.++|+|+| +.+++...+...
T Consensus 226 ~G~~~S~l~e~~~~~-------l~~~D~~g~~~ld~i~d~~~~kgtG~wt~~~A~~~gvp~p~i~~av~~R~~S~ 293 (484)
T 4gwg_A 226 KTELDSFLIEITANI-------LKFQDTDGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSS 293 (484)
T ss_dssp TTTTCBHHHHHHHHH-------HHCBCTTSSBSGGGSCCCCCSSCTTHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred CCCccchHHHHHHHH-------HhcCCccCCccHHHHhccccCcchHHHHHHHHHHcCCCchHHHHHHHHHHHhh
Confidence 777888876544211 1122333333333322 333 245778899999999 555565666554
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-34 Score=278.41 Aligned_cols=258 Identities=19% Similarity=0.259 Sum_probs=221.1
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh-----CCCCCCCCHHHHhhc---CCEEEEeCCCchHHH
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----MGVPTKETPFEVAEA---SDVVITMLPSSSHVL 116 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~-----~g~~~~~s~~e~~~~---aDiVi~~v~~~~~~~ 116 (355)
..+|||||+|.||++||.+|+++||+|++|||++++++.+.+ .|+..+.++.++++. +|+||++||+++.++
T Consensus 10 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~ 89 (497)
T 2p4q_A 10 SADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDFISKLKRPRKVMLLVKAGAPVD 89 (497)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHTTTTTSSEECCSSHHHHHHTSCSSCEEEECCCSSHHHH
T ss_pred CCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcccccCCCeEEeCCHHHHHhcCCCCCEEEEEcCChHHHH
Confidence 468999999999999999999999999999999999999987 577788899998877 999999999988999
Q ss_pred HHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecCC
Q 018506 117 DVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGS 196 (355)
Q Consensus 117 ~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg~ 196 (355)
+++.++.+.+. ++++|||++++.+..++++.+.+.+ . +++|+++|+++++..+..|+ .+++||+
T Consensus 90 ~vl~~l~~~l~-----~g~iIId~s~~~~~~~~~l~~~l~~------~----g~~~v~~pVsgg~~~a~~G~-~im~gg~ 153 (497)
T 2p4q_A 90 ALINQIVPLLE-----KGDIIIDGGNSHFPDSNRRYEELKK------K----GILFVGSGVSGGEEGARYGP-SLMPGGS 153 (497)
T ss_dssp HHHHHHGGGCC-----TTCEEEECSCCCHHHHHHHHHHHHH------T----TCEEEEEEEESHHHHHHHCC-EEEEEEC
T ss_pred HHHHHHHHhCC-----CCCEEEECCCCChhHHHHHHHHHHH------c----CCceeCCCcccChhHhhcCC-eEEecCC
Confidence 99876554442 5679999999999988888877653 1 27899999999999999999 8899999
Q ss_pred HHHHHHHHHHHHHcCCC------eEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHH---hcC
Q 018506 197 EDAYQAAKPLFLSMGKN------TIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS-LGISASTLTKILN---SSS 266 (355)
Q Consensus 197 ~~~~~~v~~ll~~~g~~------~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~-~Gi~~~~~~~~~~---~~~ 266 (355)
+++++.++++|+.++.+ ++++|+.|.+.++|+++|.+.+..+++++|++.++++ .|++++++.+++. .+.
T Consensus 154 ~e~~~~v~~ll~~~g~~~dGe~~v~~vg~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~~~~~w~~g~ 233 (497)
T 2p4q_A 154 EEAWPHIKNIFQSISAKSDGEPCCEWVGPAGAGHYVKMVHNGIEYGDMQLICEAYDIMKRLGGFTDKEISDVFAKWNNGV 233 (497)
T ss_dssp GGGHHHHHHHHHHHSCEETTEESCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcCccCCCCceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHhcCCc
Confidence 99999999999999987 7899989999999999999999999999999999999 6999999999984 566
Q ss_pred CCcccccCCCCCCCcccCCCCCCCCCCCcchhhHH-----HHHH-HHHHHHHHhCCCChHHHHHH
Q 018506 267 ARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMA-----KDLN-LALASAKEVGVDCPLTSQAQ 325 (355)
Q Consensus 267 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----kd~~-~~~~~a~~~gv~~pi~~~~~ 325 (355)
+.||..+...+ .+..++|.+++.++.+. ||++ .+.+.+++.|+++|++..+.
T Consensus 234 ~~S~l~~~~~~-------~l~~~d~~~~~~vd~i~D~~~~KgtG~~~~~~A~~~Gv~~P~~~~av 291 (497)
T 2p4q_A 234 LDSFLVEITRD-------ILKFDDVDGKPLVEKIMDTAGQKGTGKWTAINALDLGMPVTLIGEAV 291 (497)
T ss_dssp TCBHHHHHHHH-------HHTCBCTTSSBGGGGSCCCCCCCSHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred cccHHHHHHHH-------HHhcCCCCCccHHHHHHHhhccchHHHHHHHHHHHcCCCCchHHHHH
Confidence 67776543321 12245665567888777 8876 78999999999999998864
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-32 Score=263.72 Aligned_cols=261 Identities=15% Similarity=0.178 Sum_probs=210.7
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC--------------------CCCCCCCHHHHhhcCC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM--------------------GVPTKETPFEVAEASD 103 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~--------------------g~~~~~s~~e~~~~aD 103 (355)
..-+|+|||+|.||.++|..|+++||+|++|||++++++.+++. ++.+++++.+++++||
T Consensus 7 ~~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~~aD 86 (446)
T 4a7p_A 7 GSVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVKDAD 86 (446)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHTTCS
T ss_pred CceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHHhcCC
Confidence 34689999999999999999999999999999999999998763 1356788999999999
Q ss_pred EEEEeCCCch----------HHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEE
Q 018506 104 VVITMLPSSS----------HVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML 173 (355)
Q Consensus 104 iVi~~v~~~~----------~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~ 173 (355)
+||+|||++. .+++++..+.+.++ ++++||++||+.|.+++++.+.+.+.. .+ .++.+.
T Consensus 87 vvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~-----~g~iVV~~STv~pgtt~~l~~~l~e~~----~~--~d~~v~ 155 (446)
T 4a7p_A 87 AVFIAVGTPSRRGDGHADLSYVFAAAREIAENLT-----KPSVIVTKSTVPVGTGDEVERIIAEVA----PN--SGAKVV 155 (446)
T ss_dssp EEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCC-----SCCEEEECSCCCTTHHHHHHHHHHHHS----TT--SCCEEE
T ss_pred EEEEEcCCCCccccCCccHHHHHHHHHHHHHhcC-----CCCEEEEeCCCCchHHHHHHHHHHHhC----CC--CCceEE
Confidence 9999999885 58888766544442 567999999999999999988776421 11 246788
Q ss_pred eCCCCCChHHH---hcCceEEEecCC-HHHHHHHHHHHHHcCCC---eEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 018506 174 DAPVSGGVLAA---EAGTLTFMVGGS-EDAYQAAKPLFLSMGKN---TIYCGGAGNGAAAKICNNLTMAVSMLGVSEALT 246 (355)
Q Consensus 174 ~~pv~g~~~~~---~~g~~~~~~gg~-~~~~~~v~~ll~~~g~~---~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~ 246 (355)
.+|.+..+..+ ......+++|++ +++.+.++++|+.++.. ++++++++.++..|+++|.+.+..+++++|+..
T Consensus 156 ~~Pe~a~eG~a~~d~~~p~~ivvG~~~~~~~~~~~~ly~~~~~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~~~ 235 (446)
T 4a7p_A 156 SNPEFLREGAAIEDFKRPDRVVVGTEDEFARQVMREIYRPLSLNQSAPVLFTGRRTSELIKYAANAFLAVKITFINEIAD 235 (446)
T ss_dssp ECCCCCCTTSHHHHHHSCSCEEEECSCHHHHHHHHHHHCSCC-----CEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCcccccccchhhhccCCCEEEEeCCcHHHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88876433322 122226777775 88999999999999875 588899999999999999999999999999999
Q ss_pred HHHHcCCCHHHHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHH
Q 018506 247 LGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQD 326 (355)
Q Consensus 247 la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~ 326 (355)
+|+++|+|++++.++++....-.| ..+ ..++||+..++.||+.++.+.|++.|+++|+++++.+
T Consensus 236 l~~~~GiD~~~v~~~~~~~~rig~--~~l--------------~pg~G~gg~c~~KD~~~l~~~A~~~g~~~~l~~~~~~ 299 (446)
T 4a7p_A 236 LCEQVGADVQEVSRGIGMDNRIGG--KFL--------------HAGPGYGGSCFPKDTLALMKTAADNETPLRIVEATVQ 299 (446)
T ss_dssp HHHHTTCCHHHHHHHHHTSTTC-----CC--------------CCCSCCCTTTHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHhcCCCCCC--ccC--------------CCCCCcchhhHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 999999999999999987531111 000 2245788999999999999999999999999999988
Q ss_pred HHHHH
Q 018506 327 IYAKL 331 (355)
Q Consensus 327 ~~~~~ 331 (355)
+.+.-
T Consensus 300 iN~~~ 304 (446)
T 4a7p_A 300 VNDAR 304 (446)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77653
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-33 Score=274.97 Aligned_cols=260 Identities=18% Similarity=0.279 Sum_probs=216.5
Q ss_pred CCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC----CCCCCCCHHHHhhc---CCEEEEeCCCchH
Q 018506 42 SCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM----GVPTKETPFEVAEA---SDVVITMLPSSSH 114 (355)
Q Consensus 42 ~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~----g~~~~~s~~e~~~~---aDiVi~~v~~~~~ 114 (355)
.++.++|+|||+|.||++||.+|+++||+|++|||++++++.+.+. |+..++++++++++ +|+||++||+++.
T Consensus 12 ~~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~ 91 (480)
T 2zyd_A 12 HMSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAG 91 (480)
T ss_dssp ---CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHSTTSCEEECSSHHHHHHTBCSSCEEEECSCSSSH
T ss_pred ccCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhCCCCCeEEeCCHHHHHhCCCCCCEEEEECCCHHH
Confidence 3677899999999999999999999999999999999999998864 67778899999887 9999999999778
Q ss_pred HHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEec
Q 018506 115 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVG 194 (355)
Q Consensus 115 ~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~g 194 (355)
+++++.++.+.+. ++++|||++++.+..++++.+.+.+ . +++|+++|+++++..+..|+ .+++|
T Consensus 92 v~~vl~~l~~~l~-----~g~iIId~s~g~~~~t~~l~~~l~~------~----g~~~v~~pv~gg~~~a~~g~-~i~~g 155 (480)
T 2zyd_A 92 TDAAIDSLKPYLD-----KGDIIIDGGNTFFQDTIRRNRELSA------E----GFNFIGTGVSGGEEGALKGP-SIMPG 155 (480)
T ss_dssp HHHHHHHHGGGCC-----TTCEEEECSCCCHHHHHHHHHHHHH------T----TCEEEEEEEESHHHHHHHCC-EEEEE
T ss_pred HHHHHHHHHhhcC-----CCCEEEECCCCCHHHHHHHHHHHHH------C----CCCeeCCccccCHhHHhcCC-eEEec
Confidence 9999876554442 4679999999999888888777753 1 27889999999999888999 89999
Q ss_pred CCHHHHHHHHHHHHHcCCC-------eEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHH---
Q 018506 195 GSEDAYQAAKPLFLSMGKN-------TIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS-LGISASTLTKILN--- 263 (355)
Q Consensus 195 g~~~~~~~v~~ll~~~g~~-------~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~-~Gi~~~~~~~~~~--- 263 (355)
|+++.++.++++|+.++.+ +.++|+.|.+.++|+++|.+.+..+++++|++.++++ .|++++++.+++.
T Consensus 156 g~~~~~~~v~~ll~~~g~~~~dGe~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~l~~~w~ 235 (480)
T 2zyd_A 156 GQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWN 235 (480)
T ss_dssp SCHHHHHHHHHHHHHHSCBCTTSCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhccccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhc
Confidence 9999999999999999987 7899999999999999999999999999999999999 6999999998884
Q ss_pred hcCCCcccccCCCCCCCcccCCCCCCCCCCCcchhhHH-----HHHH-HHHHHHHHhCCCChHHHHH
Q 018506 264 SSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMA-----KDLN-LALASAKEVGVDCPLTSQA 324 (355)
Q Consensus 264 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----kd~~-~~~~~a~~~gv~~pi~~~~ 324 (355)
.+...+|......+ + ..+++|.+++.++... |+.+ .+.+.+++.|+++|+++.+
T Consensus 236 ~g~~~s~l~~~~~~---~----l~~~d~~~~~~v~~i~D~~~~k~tG~~~~~~A~~~gv~~Pi~~~a 295 (480)
T 2zyd_A 236 NGELSSYLIDITKD---I----FTKKDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITES 295 (480)
T ss_dssp HTTTCBHHHHHHHH---H----HHCBCTTSSBGGGGBCCCCCCCSCTTHHHHHHHHHTCCCHHHHHH
T ss_pred CCCcccHHHHHHHH---H----HhcCCCCCcchHHHHHHHhcCchHHHHHHHHHHHcCCCCchHHHH
Confidence 46566665432221 1 1134565556666544 4444 7889999999999999986
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-32 Score=265.56 Aligned_cols=263 Identities=16% Similarity=0.142 Sum_probs=206.1
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHC-CC-cEEEEeCChh----HHHHHHhC---------------------C-CCCCCC
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKA-GY-KMAVHDVNCN----VMKMFSDM---------------------G-VPTKET 94 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~-G~-~V~v~dr~~~----~~~~l~~~---------------------g-~~~~~s 94 (355)
+.+|||+|||+|.||.++|..|+++ || +|++||++++ +++.+++. + +..+++
T Consensus 16 ~~~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ttd 95 (478)
T 3g79_A 16 GPIKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTPD 95 (478)
T ss_dssp CSCCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEESC
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEeCc
Confidence 3568999999999999999999999 99 9999999999 99888752 1 223344
Q ss_pred HHHHhhcCCEEEEeCCCch-----------HHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhc
Q 018506 95 PFEVAEASDVVITMLPSSS-----------HVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEK 163 (355)
Q Consensus 95 ~~e~~~~aDiVi~~v~~~~-----------~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~ 163 (355)
.+++++||+||+|||++. .+..+...+.+.++ ++++||++||+.|.+++++.+.+.+. ..
T Consensus 96 -~ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~-----~g~iVV~~STv~pgtt~~v~~~ile~---~~ 166 (478)
T 3g79_A 96 -FSRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLK-----PGMLVVLESTITPGTTEGMAKQILEE---ES 166 (478)
T ss_dssp -GGGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCC-----TTCEEEECSCCCTTTTTTHHHHHHHH---HH
T ss_pred -HHHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcC-----CCcEEEEeCCCChHHHHHHHHHHHHH---hc
Confidence 678899999999999873 24444443333332 56799999999999999988754311 01
Q ss_pred cC-CCCCceEEeCCCCCChHHHhcC---ceEEEecCCHHHHHHHHHHHHHc-CCCeEEeCCcchHHHHHHHHHHHHHHHH
Q 018506 164 KD-SWENPVMLDAPVSGGVLAAEAG---TLTFMVGGSEDAYQAAKPLFLSM-GKNTIYCGGAGNGAAAKICNNLTMAVSM 238 (355)
Q Consensus 164 ~g-~~~~~~~~~~pv~g~~~~~~~g---~~~~~~gg~~~~~~~v~~ll~~~-g~~~~~~g~~g~a~~~Kl~~n~~~~~~~ 238 (355)
+. ....+.++++|.+..+..+..+ ...++.|++++.++.++++|+.+ +..+++++++++|+..|+++|.+.+..+
T Consensus 167 g~~~~~d~~v~~~Pe~~~~G~a~~~~~~~~~Iv~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~~aE~~Kl~~N~~~a~~I 246 (478)
T 3g79_A 167 GLKAGEDFALAHAPERVMVGRLLKNIREHDRIVGGIDEASTKRAVELYSPVLTVGQVIPMSATAAEVTKTAENTFRDLQI 246 (478)
T ss_dssp CCCBTTTBEEEECCCCCCTTSHHHHHHHSCEEEEESSHHHHHHHHHHHGGGCSSCCEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcCCceeEEeCCccCCccchhhhhcCCcEEEEeCCHHHHHHHHHHHhhhccCCeEEeCCHHHHHHHHHHHHHHHHHHH
Confidence 10 0123689999988555444332 23688899999999999999999 7889999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCC--cchhhHHHHHHHHHHHHHHhCC
Q 018506 239 LGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG--FASKLMAKDLNLALASAKEVGV 316 (355)
Q Consensus 239 ~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~kd~~~~~~~a~~~gv 316 (355)
++++|+..+|++.|+|.+++.++++... .. ++....|.|| |+..|+.||+.++.+.+++.|+
T Consensus 247 a~~nE~~~l~e~~GiD~~~v~~~~~~~~----~~------------ri~~~~~~PG~G~GG~c~~KD~~~l~~~a~~~g~ 310 (478)
T 3g79_A 247 AAINQLALYCEAMGINVYDVRTGVDSLK----GE------------GITRAVLWPGAGVGGHCLTKDTYHLERGVKIGRG 310 (478)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHTSC----CS------------SSCCCCCCCCSCCCSSHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCCCc----hh------------hhccccCCCCCCcchhhHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999998632 10 0112245554 5678999999999999999998
Q ss_pred C-------ChHHHHHHHHHHH
Q 018506 317 D-------CPLTSQAQDIYAK 330 (355)
Q Consensus 317 ~-------~pi~~~~~~~~~~ 330 (355)
+ +++++++.++.+.
T Consensus 311 ~~~~~~~~~~li~~~~~iN~~ 331 (478)
T 3g79_A 311 ELDYPEGADSIYVLARKVNDF 331 (478)
T ss_dssp CCCCCSSCCCHHHHHHHHHHH
T ss_pred CcccccchhHHHHHHHHHHHH
Confidence 7 8999998876554
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-31 Score=255.75 Aligned_cols=262 Identities=16% Similarity=0.181 Sum_probs=209.0
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC--------------------CCCCCCCHHHHhhcCCEE
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM--------------------GVPTKETPFEVAEASDVV 105 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~--------------------g~~~~~s~~e~~~~aDiV 105 (355)
|||+|||+|.||.++|..|+++||+|++|||++++++.+++. ++..++++.++++++|+|
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~aDvV 82 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPEADII 82 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGGGCSEE
T ss_pred CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHhcCCEE
Confidence 899999999999999999999999999999999999988762 134567888999999999
Q ss_pred EEeCCCch---------HHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCC
Q 018506 106 ITMLPSSS---------HVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAP 176 (355)
Q Consensus 106 i~~v~~~~---------~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p 176 (355)
|+|||++. .+++++..+.+.++ ++++||++||+.|.+.+++.+.+.+.... . +....+.+..+|
T Consensus 83 iiaVptp~~~~~~~dl~~v~~v~~~i~~~l~-----~g~iVV~~STv~pgt~~~l~~~l~~~~~~-~-~~~~d~~v~~~P 155 (450)
T 3gg2_A 83 FIAVGTPAGEDGSADMSYVLDAARSIGRAMS-----RYILIVTKSTVPVGSYRLIRKAIQEELDK-R-EVLIDFDIASNP 155 (450)
T ss_dssp EECCCCCBCTTSSBCCHHHHHHHHHHHHHCC-----SCEEEEECSCCCTTHHHHHHHHHHHHHHH-T-TCCCCEEEEECC
T ss_pred EEEcCCCcccCCCcChHHHHHHHHHHHhhCC-----CCCEEEEeeeCCCcchHHHHHHHHHhccc-c-CcCcceeEEech
Confidence 99999875 78888776544443 56899999999999999998877542110 0 101135677788
Q ss_pred CCCChHHH---hcCceEEEecC-CHHHHHHHHHHHHHcCC--CeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018506 177 VSGGVLAA---EAGTLTFMVGG-SEDAYQAAKPLFLSMGK--NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS 250 (355)
Q Consensus 177 v~g~~~~~---~~g~~~~~~gg-~~~~~~~v~~ll~~~g~--~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~ 250 (355)
.+..+..+ ......+++|+ ++++.+.++++|+.++. .+++.++++.+++.|+++|.+.+..+++++|+..+|++
T Consensus 156 e~a~eG~~~~~~~~p~~ivvG~~~~~~~~~~~~l~~~~~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~~~l~~~ 235 (450)
T 3gg2_A 156 EFLKEGNAIDDFMKPDRVVVGVDSDRARELITSLYKPMLLNNFRVLFMDIASAEMTKYAANAMLATRISFMNDVANLCER 235 (450)
T ss_dssp CCCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTTCCSCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccchhhhccCCCEEEEEcCCHHHHHHHHHHHHHHhcCCCeEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76433222 22233577776 68999999999999986 36788899999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 018506 251 LGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAK 330 (355)
Q Consensus 251 ~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~ 330 (355)
.|+|++++.++++.... |....+ .-++||+..++.||+.++.+.|++.|+++|+++++.++.+.
T Consensus 236 ~Gid~~~v~~~~~~~~r--ig~~~~--------------~pg~G~gg~c~~KD~~~l~~~a~~~g~~~~l~~~~~~iN~~ 299 (450)
T 3gg2_A 236 VGADVSMVRLGIGSDSR--IGSKFL--------------YPGCGYGGSCFPKDVKALIRTAEDNGYRMEVLEAVERVNEK 299 (450)
T ss_dssp HTCCHHHHHHHHHTSTT--TCSSSC--------------CCSSCCCSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHcCCCC--CCcccC--------------CCCCCCCcccHHhhHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 99999999999987531 111111 11346888999999999999999999999999999988764
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1e-31 Score=262.37 Aligned_cols=258 Identities=21% Similarity=0.302 Sum_probs=213.6
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC----CCCCCCCHHHHhhc---CCEEEEeCCCchHHH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM----GVPTKETPFEVAEA---SDVVITMLPSSSHVL 116 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~----g~~~~~s~~e~~~~---aDiVi~~v~~~~~~~ 116 (355)
.+|||+|||+|.||.+++.+|+++||+|.+|||++++++.+.+. ++..+.+++++++. +|+||+|||+++.++
T Consensus 4 ~~~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVilavp~~~~v~ 83 (474)
T 2iz1_A 4 AQANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGAATD 83 (474)
T ss_dssp TTBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSCEEECSSHHHHHHTBCSSCEEEECCCTTHHHH
T ss_pred CCCcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCcCCCeEEeCCHHHHHhhccCCCEEEEEccCchHHH
Confidence 45899999999999999999999999999999999999988764 67777899998876 999999999987889
Q ss_pred HHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecCC
Q 018506 117 DVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGS 196 (355)
Q Consensus 117 ~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg~ 196 (355)
+++.++.+.+. ++++||+++++.+...+++.+.+.+ . +.+|+++|+++++..+..|. .++.|++
T Consensus 84 ~vl~~l~~~l~-----~g~iiId~s~~~~~~~~~l~~~l~~------~----g~~~v~~pv~gg~~~a~~g~-~i~~gg~ 147 (474)
T 2iz1_A 84 ATIKSLLPLLD-----IGDILIDGGNTHFPDTMRRNAELAD------S----GINFIGTGVSGGEKGALLGP-SMMPGGQ 147 (474)
T ss_dssp HHHHHHGGGCC-----TTCEEEECSCCCHHHHHHHHHHTTT------S----SCEEEEEEECSHHHHHHHCC-CEEEEEC
T ss_pred HHHHHHHhhCC-----CCCEEEECCCCCHHHHHHHHHHHHH------C----CCeEECCCCCCChhhhccCC-eEEecCC
Confidence 98876544443 4579999999998877777766542 1 37889999999988888888 7889999
Q ss_pred HHHHHHHHHHHHHcCCC--------eEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHH---h
Q 018506 197 EDAYQAAKPLFLSMGKN--------TIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS-LGISASTLTKILN---S 264 (355)
Q Consensus 197 ~~~~~~v~~ll~~~g~~--------~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~-~Gi~~~~~~~~~~---~ 264 (355)
++.++.++++|+.++.+ +.++|+.|.+.++|+++|.+.+..+++++|++.++++ .|++++++.+++. .
T Consensus 148 ~~~~~~v~~ll~~~g~~~~~dge~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~~Gl~~~~~~~l~~~w~~ 227 (474)
T 2iz1_A 148 KEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGAGHYVKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQAIFEEWNE 227 (474)
T ss_dssp HHHHHHHHHHHHHHSCBCTTTCCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcccccCCCceEEEECCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcC
Confidence 99999999999999987 5788999999999999999999999999999999999 7999999998885 3
Q ss_pred cCCCcccccCCCCCCCcccCCCCCCCCCCC-cchhhHH-----HHHH-HHHHHHHHhCCCChHHHHH
Q 018506 265 SSARCWSSDSYNPVPGVMEGVPASRNYGGG-FASKLMA-----KDLN-LALASAKEVGVDCPLTSQA 324 (355)
Q Consensus 265 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----kd~~-~~~~~a~~~gv~~pi~~~~ 324 (355)
+...+|......+ .+..+|+.+| +.++... |+.+ .+.+.+++.|+++|+++.+
T Consensus 228 g~~~s~l~~~~~~-------~l~~~d~~~g~~~vd~i~D~~~~k~tG~~~~~~A~~~gv~~P~~~~a 287 (474)
T 2iz1_A 228 GELDSYLIEITKE-------VLKRKDDEGEGYIVDKILDKAGNKGTGKWTSESALDLGVPLPLITES 287 (474)
T ss_dssp TTTCBHHHHHHHH-------HTTCBCSSSSSBGGGGBCSCCCCCSHHHHHHHHHHHHTCCCHHHHHH
T ss_pred CCccccHHHhhhh-------HhhcCCCCCChhHHHHHHHhhcccchHHHHHHHHHHcCCCCchHHHH
Confidence 4455554332211 1123466566 6666544 6666 6899999999999999986
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1e-31 Score=262.90 Aligned_cols=263 Identities=18% Similarity=0.241 Sum_probs=216.9
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh-----CCCCCCCCHHHHhh---cCCEEEEeCCCchHHHH
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----MGVPTKETPFEVAE---ASDVVITMLPSSSHVLD 117 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~-----~g~~~~~s~~e~~~---~aDiVi~~v~~~~~~~~ 117 (355)
|||+|||+|.||+++|.+|+++||+|++|||++++++.+.+ .++..+.+++++++ ++|+||+|||+++.+++
T Consensus 3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~g~gi~~~~~~~e~v~~l~~aDvVilaVp~~~~v~~ 82 (482)
T 2pgd_A 3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDN 82 (482)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHHH
T ss_pred CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhccccCCCeEEeCCHHHHHhhccCCCEEEEeCCChHHHHH
Confidence 78999999999999999999999999999999999999987 56777889999875 89999999999878999
Q ss_pred HhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecCCH
Q 018506 118 VYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSE 197 (355)
Q Consensus 118 vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg~~ 197 (355)
++..+.+.+. ++++||+++++.+....++.+.+.+ . +++|+++|+++++..+..|+ .++.|+++
T Consensus 83 vl~~l~~~l~-----~g~iII~~s~~~~~~~~~l~~~l~~------~----g~~~v~~pv~g~~~~a~~g~-~i~~gg~~ 146 (482)
T 2pgd_A 83 FIEKLVPLLD-----IGDIIIDGGNSEYRDTMRRCRDLKD------K----GILFVGSGVSGGEDGARYGP-SLMPGGNK 146 (482)
T ss_dssp HHHHHHHHCC-----TTCEEEECSCCCHHHHHHHHHHHHH------T----TCEEEEEEEESHHHHHHHCC-EEEEEECT
T ss_pred HHHHHHhhcC-----CCCEEEECCCCCHHHHHHHHHHHHH------c----CCeEeCCCCCCChhhhccCC-eEEeCCCH
Confidence 8876544442 4579999999999877777776653 1 27889999999998888898 78999999
Q ss_pred HHHHHHHHHHHHcCCCe-------EEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHH---hcC
Q 018506 198 DAYQAAKPLFLSMGKNT-------IYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSL-GISASTLTKILN---SSS 266 (355)
Q Consensus 198 ~~~~~v~~ll~~~g~~~-------~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~-Gi~~~~~~~~~~---~~~ 266 (355)
+.++.++++|+.++.++ .++|+.|.+.++|+++|.+.+..+++++|++.++++. |++++++.+++. .+.
T Consensus 147 e~~~~v~~ll~~~g~~v~d~~~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~~G~~~~~~~~~~~~w~~g~ 226 (482)
T 2pgd_A 147 EAWPHIKAIFQGIAAKVGTGEPCCDWVGDDGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFEEWNKTE 226 (482)
T ss_dssp TTHHHHHHHHHHHSCBCTTSCBSCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHhhhhccCCCcceEEECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHhcCCC
Confidence 99999999999999876 6888899999999999999999999999999999999 999999999986 444
Q ss_pred CCcccccCCCCCCCcccCCCCCCCCCCCcchhhH------HHHHHHHHHHHHHhCCCChHHH-HHHHHHHHH
Q 018506 267 ARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLM------AKDLNLALASAKEVGVDCPLTS-QAQDIYAKL 331 (355)
Q Consensus 267 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~kd~~~~~~~a~~~gv~~pi~~-~~~~~~~~~ 331 (355)
..|+..+...+ .+..+++.+++.++.. .++...+++.|+++|+|+|++. .+++.+...
T Consensus 227 ~~S~l~~~~~~-------~l~~~d~~~~~~ld~i~d~~~~k~t~~~~~~~A~~~Gv~~P~i~~av~~~~~s~ 291 (482)
T 2pgd_A 227 LDSFLIEITAS-------ILKFQDADGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSS 291 (482)
T ss_dssp TCBHHHHHHHH-------HHHCBCTTSSBSGGGSCCCCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred cCchHHHHHhH-------HhhccCCCCCeeecccccccccccHHHHHHHHHHHcCCCcchHHHHHHHHhhhh
Confidence 45544332211 1123456556666654 3666789999999999999995 677766544
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.98 E-value=4.8e-32 Score=245.55 Aligned_cols=255 Identities=20% Similarity=0.226 Sum_probs=204.7
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeC--ChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCC
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDV--NCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPN 123 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr--~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~ 123 (355)
|||+|||+|+||.+++.+|.++||+|++||| ++++++.+.+.|+. +++.++++++|+||+|+|++..++.+ ..
T Consensus 1 M~I~iIG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~aDvvi~~v~~~~~~~~~-~~-- 75 (264)
T 1i36_A 1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVT--ETSEEDVYSCPVVISAVTPGVALGAA-RR-- 75 (264)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCE--ECCHHHHHTSSEEEECSCGGGHHHHH-HH--
T ss_pred CeEEEEechHHHHHHHHHHHHCCCeEEEeCCccCHHHHHHHHHCCCc--CCHHHHHhcCCEEEEECCCHHHHHHH-HH--
Confidence 6899999999999999999999999999999 77888888776766 77888889999999999987666654 22
Q ss_pred ccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecCCHHHHHHH
Q 018506 124 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAA 203 (355)
Q Consensus 124 ~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg~~~~~~~v 203 (355)
+... .++ ++++++++.+.+.+.+.+.+.+ . . |+++|+++++..+..+.+ ++++++.+ +.+
T Consensus 76 -~~~~---~~~-~vi~~s~~~~~~~~~l~~~~~~------~-----g-~~~~~v~~~~~~~~~g~~-~~~~g~~~--~~~ 135 (264)
T 1i36_A 76 -AGRH---VRG-IYVDINNISPETVRMASSLIEK------G-----G-FVDAAIMGSVRRKGADIR-IIASGRDA--EEF 135 (264)
T ss_dssp -HHTT---CCS-EEEECSCCCHHHHHHHHHHCSS------S-----E-EEEEEECSCHHHHGGGCE-EEEESTTH--HHH
T ss_pred -HHHh---cCc-EEEEccCCCHHHHHHHHHHHhh------C-----C-eeeeeeeCCccccccCCe-EEecCCcH--HHh
Confidence 3322 234 9999999999888888777642 1 2 788899998888888887 88888765 788
Q ss_pred HHHHHHcCCCeEEeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcccccCCCCCCCcc
Q 018506 204 KPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVM 282 (355)
Q Consensus 204 ~~ll~~~g~~~~~~g~-~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 282 (355)
++ |+.+|++++++++ +|.+.++|+++|.+.+.++.++.|++.++++.|++++ +++.+..+.+.++... .+.
T Consensus 136 ~~-l~~~g~~~~~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~la~~~G~~~~-~~~~~~~~~g~~~~~~----~~~-- 207 (264)
T 1i36_A 136 MK-LNRYGLNIEVRGREPGDASAIKMLRSSYTKGVSALLWETLTAAHRLGLEED-VLEMLEYTEGNDFRES----AIS-- 207 (264)
T ss_dssp HG-GGGGTCEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHTTSCSSTHHH----HHH--
T ss_pred hh-HHHcCCeeEECCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHhcCccHHHH----HHH--
Confidence 99 9999998899997 8999999999999999999999999999999999987 7788877544334311 111
Q ss_pred cCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCc
Q 018506 283 EGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKD 340 (355)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g~g~~d 340 (355)
+..+++.++++ ..||++.+++.+++. +++|++++++++++++.+.|++..|
T Consensus 208 ---~~~~~~~~g~~---~~~~~~~~~~~a~~~-v~~p~~~~v~~~~~~~~~~~~~~~~ 258 (264)
T 1i36_A 208 ---RLKSSCIHARR---RYEEMKEVQDMLAEV-IDPVMPTCIIRIFDKLKDVKVSADA 258 (264)
T ss_dssp ---HHHHHHHTHHH---HHHHHHHHHHHHHTT-SCCSHHHHHHHHHHHHCC------G
T ss_pred ---HhcCCCCcchh---hHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHcCCChhh
Confidence 12346666665 679999999999999 9999999999999999998876655
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1e-30 Score=249.66 Aligned_cols=251 Identities=16% Similarity=0.184 Sum_probs=203.0
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC------------------CCCCCCCHHHHhhcCCE
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM------------------GVPTKETPFEVAEASDV 104 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~------------------g~~~~~s~~e~~~~aDi 104 (355)
..+|||+|||+|.||.++|..|++ ||+|++||+++++++.+++. ++..++++.++++++|+
T Consensus 34 ~~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~~~aDv 112 (432)
T 3pid_A 34 SEFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAYRNADY 112 (432)
T ss_dssp -CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHTTCSE
T ss_pred cCCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHHHhCCCE
Confidence 356899999999999999999998 99999999999999988762 34567888999999999
Q ss_pred EEEeCCCc----------hHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEe
Q 018506 105 VITMLPSS----------SHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD 174 (355)
Q Consensus 105 Vi~~v~~~----------~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~ 174 (355)
||+|+|++ ..+++++..+.+ ++ ++++||++||+.|.+++++.+.+.+ ..+..
T Consensus 113 ViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~-----~g~iVV~~STv~pgtt~~l~~~l~~------------~~v~~ 174 (432)
T 3pid_A 113 VIIATPTDYDPKTNYFNTSTVEAVIRDVTE-IN-----PNAVMIIKSTIPVGFTRDIKERLGI------------DNVIF 174 (432)
T ss_dssp EEECCCCEEETTTTEEECHHHHHHHHHHHH-HC-----TTSEEEECSCCCTTHHHHHHHHHTC------------CCEEE
T ss_pred EEEeCCCccccccccccHHHHHHHHHHHHh-cC-----CCcEEEEeCCCChHHHHHHHHHHhh------------ccEee
Confidence 99999997 257777765444 42 5679999999999999999887753 23556
Q ss_pred CCCCCChHHHhcCce---EEEecCCHHHHHHHHHHHHH--cCCC-eEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018506 175 APVSGGVLAAEAGTL---TFMVGGSEDAYQAAKPLFLS--MGKN-TIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLG 248 (355)
Q Consensus 175 ~pv~g~~~~~~~g~~---~~~~gg~~~~~~~v~~ll~~--~g~~-~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la 248 (355)
+|+++.+..+..+.+ .+++|++++.++++.++|.. ++.. .++.++++.|++.|+++|.+.+..+++++|+..+|
T Consensus 175 sPe~~~~G~A~~~~l~p~rIvvG~~~~~~~~~~~ll~~~~~~~~~~v~~~~~~~AE~~Kl~~N~~~a~~Ia~~nEl~~la 254 (432)
T 3pid_A 175 SPEFLREGRALYDNLHPSRIVIGERSARAERFADLLKEGAIKQDIPTLFTDSTEAEAIKLFANTYLALRVAYFNELDSYA 254 (432)
T ss_dssp CCCCCCTTSHHHHHHSCSCEEESSCSHHHHHHHHHHHHHCSSSSCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccCCcchhhhcccCCceEEecCCHHHHHHHHHHHHhhhccCCCeEEecCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988777766655 79999999999999999987 4432 45667899999999999999999999999999999
Q ss_pred HHcCCCHHHHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 018506 249 QSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIY 328 (355)
Q Consensus 249 ~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~ 328 (355)
++.|+|.+++.++++.... ....++ .-+.|++..|+.||..++... ..|++.++++++.++-
T Consensus 255 e~~GiD~~~v~~~~~~dpr---ig~~~~-------------~pg~G~GG~C~pkD~~~L~~~--~~~~~~~li~~~~~~N 316 (432)
T 3pid_A 255 ESQGLNSKQIIEGVCLDPR---IGNHYN-------------NPSFGYGGYCLPKDTKQLLAN--YESVPNNIIAAIVDAN 316 (432)
T ss_dssp HHTTCCHHHHHHHHHTSTT---TCSSSC-------------CCCSCCCTTTHHHHHHHHHHH--TTTSCCSHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHccCCC---CCcccC-------------CCCCCCcccchhhhHHHHHHH--hcCCchhHHHHHHHHH
Confidence 9999999999999986421 111110 012367889999999988644 4699999999988775
Q ss_pred HH
Q 018506 329 AK 330 (355)
Q Consensus 329 ~~ 330 (355)
+.
T Consensus 317 ~~ 318 (432)
T 3pid_A 317 RT 318 (432)
T ss_dssp HH
T ss_pred Hh
Confidence 43
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-31 Score=257.99 Aligned_cols=256 Identities=18% Similarity=0.303 Sum_probs=210.4
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC-C-------CCCCCCHHHHhhc---CCEEEEeCCCchH
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-G-------VPTKETPFEVAEA---SDVVITMLPSSSH 114 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~-g-------~~~~~s~~e~~~~---aDiVi~~v~~~~~ 114 (355)
|||+|||+|.||+++|.+|+++||+|++|||++++++.+.+. | +..+.+++++++. +|+||+|||+++.
T Consensus 2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDvVilaVp~~~~ 81 (478)
T 1pgj_A 2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA 81 (478)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCEEEEecCChHH
Confidence 789999999999999999999999999999999999988763 5 5567789898874 9999999999878
Q ss_pred HHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEec
Q 018506 115 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVG 194 (355)
Q Consensus 115 ~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~g 194 (355)
+++++..+.+.+. ++++||+++++.+...+++.+.+.+ . +.+|+++|+++++..+..+. .++.|
T Consensus 82 v~~vl~~l~~~l~-----~g~iIId~sng~~~~~~~l~~~l~~------~----g~~~v~~pv~gg~~~a~~g~-~i~~g 145 (478)
T 1pgj_A 82 TDSTIEQLKKVFE-----KGDILVDTGNAHFKDQGRRAQQLEA------A----GLRFLGMGISGGEEGARKGP-AFFPG 145 (478)
T ss_dssp HHHHHHHHHHHCC-----TTCEEEECCCCCHHHHHHHHHHHHT------T----TCEEEEEEEESHHHHHHHCC-EEEEE
T ss_pred HHHHHHHHHhhCC-----CCCEEEECCCCChHHHHHHHHHHHH------C----CCeEEEeeccCCHHHHhcCC-eEecc
Confidence 8888866544442 4579999999998877777776653 1 27889999999988888888 78889
Q ss_pred CCHHHHHHHHHHHHHcCCC-------eEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH----
Q 018506 195 GSEDAYQAAKPLFLSMGKN-------TIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILN---- 263 (355)
Q Consensus 195 g~~~~~~~v~~ll~~~g~~-------~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~---- 263 (355)
++++.++.++++|+.++.+ ++++|+.|.+.+.|+++|.+.+..+++++|++.++++.|++++++.+++.
T Consensus 146 g~~~~~~~v~~ll~~~g~~~~dg~~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~G~~~~~~~~l~~~w~~ 225 (478)
T 1pgj_A 146 GTLSVWEEIRPIVEAAAAKADDGRPCVTMNGSGGAGSCVKMYHNSGEYAILQIWGEVFDILRAMGLNNDEVAAVLEDWKS 225 (478)
T ss_dssp ECHHHHHHHHHHHHHHSCBCTTSCBSCCCCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcccccCCCeeEEEeCCchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcc
Confidence 9999999999999999987 68899999999999999999999999999999999999999999999987
Q ss_pred hcCCCcccccCCCCCCCcccCCCCCCCCCCC-cchhhHH-----HHH-HHHHHHHHHhCCCChHHHHHH
Q 018506 264 SSSARCWSSDSYNPVPGVMEGVPASRNYGGG-FASKLMA-----KDL-NLALASAKEVGVDCPLTSQAQ 325 (355)
Q Consensus 264 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----kd~-~~~~~~a~~~gv~~pi~~~~~ 325 (355)
.+.+.++......+ ++ ..+++ +| +.++.+. |++ +.+++.|+++|+++|+++.+.
T Consensus 226 ~g~~~s~l~~~~~~---~l----~~~d~-~G~~~ld~i~D~~~~kgtg~~~~~~A~~~Gv~~Pi~~~av 286 (478)
T 1pgj_A 226 KNFLKSYMLDISIA---AA----RAKDK-DGSYLTEHVMDRIGSKGTGLWSAQEALEIGVPAPSLNMAV 286 (478)
T ss_dssp TSTTCBHHHHHHHH---HH----HCBCT-TSSBGGGGBCCCCCCCSHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred CCCcCchHHHhhch---hh----hcCCC-CChhHHHHHHHHhcCccHHHHHHHHHHHhCCCChHHHHHH
Confidence 55555554332211 11 12344 33 5555544 555 689999999999999999843
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.2e-30 Score=249.61 Aligned_cols=260 Identities=13% Similarity=0.138 Sum_probs=203.0
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHC--CCcEEEEeCChhHHHHHHhCC-------------------CCCCCCHHHHhhc
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKA--GYKMAVHDVNCNVMKMFSDMG-------------------VPTKETPFEVAEA 101 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~--G~~V~v~dr~~~~~~~l~~~g-------------------~~~~~s~~e~~~~ 101 (355)
+++|||+|||+|.||.++|..|+++ ||+|++|||++++++.+++.+ +..++++.+++++
T Consensus 7 ~~~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~ 86 (481)
T 2o3j_A 7 GKVSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAE 86 (481)
T ss_dssp CCCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHhhc
Confidence 4568999999999999999999998 799999999999999887532 2345677788899
Q ss_pred CCEEEEeCCCch--------------HHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh-chhhhccCC
Q 018506 102 SDVVITMLPSSS--------------HVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN-CILKEKKDS 166 (355)
Q Consensus 102 aDiVi~~v~~~~--------------~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~-~~~~~~~g~ 166 (355)
+|+||+|||++. .+++++..+.+.+. ++++||++||+.|.+.+.+.+.+.+ ..+. .+
T Consensus 87 aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~-----~g~iVV~~STv~~gt~~~l~~~l~~~~~~~--~~- 158 (481)
T 2o3j_A 87 ADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAG-----GPKIVVEKSTVPVKAAESIGCILREAQKNN--EN- 158 (481)
T ss_dssp CSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCC-----SCEEEEECSCCCTTHHHHHHHHHHHHTC-------
T ss_pred CCEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCC-----CCCEEEECCCCCCCHHHHHHHHHHHhhCcC--cC-
Confidence 999999998874 36777665444442 5689999999999999888887754 1100 01
Q ss_pred CCCceEEeCCCCCChHHHh---cCceEEEecCCH-----HHHHHHHHHHHHcCC-CeEEeCCcchHHHHHHHHHHHHHHH
Q 018506 167 WENPVMLDAPVSGGVLAAE---AGTLTFMVGGSE-----DAYQAAKPLFLSMGK-NTIYCGGAGNGAAAKICNNLTMAVS 237 (355)
Q Consensus 167 ~~~~~~~~~pv~g~~~~~~---~g~~~~~~gg~~-----~~~~~v~~ll~~~g~-~~~~~g~~g~a~~~Kl~~n~~~~~~ 237 (355)
..+.+..+|.+..+..+. .....+++|++. ++++.++++|+.++. .++++++++.+++.|++.|.+.+..
T Consensus 159 -~d~~v~~~Pe~~~~G~a~~~~~~~~~iviG~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~d~~~ae~~Kl~~N~~~a~~ 237 (481)
T 2o3j_A 159 -LKFQVLSNPEFLAEGTAMKDLANPDRVLIGGESSPEGLQAVAELVRIYENWVPRNRIITTNTWSSELSKLVANAFLAQR 237 (481)
T ss_dssp -CCEEEEECCCCCCTTCHHHHHHSCSCEEEEECSSHHHHHHHHHHHHHHHTTSCGGGEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred -CceEEEeCcccccccchhhcccCCCEEEEEecCchhhHHHHHHHHHHHHhhcCCCeEEecCHHHHHHHHHHHHHHHHHH
Confidence 124567788764443322 222256777653 578899999999996 7888899999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCC--cchhhHHHHHHHHHHHHHHhC
Q 018506 238 MLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG--FASKLMAKDLNLALASAKEVG 315 (355)
Q Consensus 238 ~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~kd~~~~~~~a~~~g 315 (355)
+++++|+..+|++.|+|.+++.++++.+.. +. ...|.|| |+..++.||+.++.+.|++.|
T Consensus 238 ia~~nE~~~la~~~Gid~~~v~~~~~~~~r--i~----------------~~~~~pg~g~gg~c~~KD~~~l~~~A~~~g 299 (481)
T 2o3j_A 238 ISSINSISAVCEATGAEISEVAHAVGYDTR--IG----------------SKFLQASVGFGGSCFQKDVLSLVYLCESLN 299 (481)
T ss_dssp HHHHHHHHHHHHHHSCCHHHHHHHHHTSTT--TC----------------SSSCCCCSCCCSSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCcCHHHHHHHHccCCC--CC----------------CCCCCCCCccCCccHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999986531 11 1133444 578899999999999999999
Q ss_pred CC--ChHHHHHHHHHH
Q 018506 316 VD--CPLTSQAQDIYA 329 (355)
Q Consensus 316 v~--~pi~~~~~~~~~ 329 (355)
++ +|+++++.++-+
T Consensus 300 ~~~~~~l~~~~~~~N~ 315 (481)
T 2o3j_A 300 LPQVADYWQGVININN 315 (481)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CCccchHHHHHHHHHH
Confidence 99 999988876544
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=247.03 Aligned_cols=262 Identities=16% Similarity=0.182 Sum_probs=204.4
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCC--------------------CCCCCCHHHHhhcCC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG--------------------VPTKETPFEVAEASD 103 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g--------------------~~~~~s~~e~~~~aD 103 (355)
..|||+|||+|.||.++|..|+++||+|++|||++++++.+++.+ +.+++++.++++++|
T Consensus 7 ~~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~~aD 86 (478)
T 2y0c_A 7 GSMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVAHGD 86 (478)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHHHHHCS
T ss_pred CCceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHHhhcCC
Confidence 469999999999999999999999999999999999999988742 234567778889999
Q ss_pred EEEEeCCCc---------hHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCC-CCceEE
Q 018506 104 VVITMLPSS---------SHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW-ENPVML 173 (355)
Q Consensus 104 iVi~~v~~~---------~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~-~~~~~~ 173 (355)
+||+|||+| ..+++++..+.+.++ ++++||+.||++|.+.+.+.+.+.+. +. . +.+ ..+.+.
T Consensus 87 vviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~-----~~~iVV~~STv~~gt~~~l~~~l~~~-~~-~-g~~~~~~~v~ 158 (478)
T 2y0c_A 87 VQFIAVGTPPDEDGSADLQYVLAAARNIGRYMT-----GFKVIVDKSTVPVGTAERVRAAVAEE-LA-K-RGGDQMFSVV 158 (478)
T ss_dssp EEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCC-----SCEEEEECSCCCTTHHHHHHHHHHHH-HH-H-TTCCCCEEEE
T ss_pred EEEEEeCCCcccCCCccHHHHHHHHHHHHHhcC-----CCCEEEEeCCcCCCchHHHHHHHHHH-hc-C-CCCCccEEEE
Confidence 999999987 688888876555543 46799999999999988888877542 10 1 100 123456
Q ss_pred eCCCCCChH---HHhcCceEEEecCC-H----HHHHHHHHHHHHcCC--CeEEeCCcchHHHHHHHHHHHHHHHHHHHHH
Q 018506 174 DAPVSGGVL---AAEAGTLTFMVGGS-E----DAYQAAKPLFLSMGK--NTIYCGGAGNGAAAKICNNLTMAVSMLGVSE 243 (355)
Q Consensus 174 ~~pv~g~~~---~~~~g~~~~~~gg~-~----~~~~~v~~ll~~~g~--~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~E 243 (355)
..|.+..+. ........+++|++ + +..+.++++|+.+.+ .++++++++.+++.|++.|.+.+..+++++|
T Consensus 159 ~~Pe~~~eG~~~~~~~~p~~iviG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~nE 238 (478)
T 2y0c_A 159 SNPEFLKEGAAVDDFTRPDRIVIGCDDDVPGERARELMKKLYAPFNRNHERTLYMDVRSAEFTKYAANAMLATRISFMNE 238 (478)
T ss_dssp ECCCCCCTTCHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHTGGGGSSSCCEEEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EChhhhcccceeeccCCCCEEEEEECCCcccHHHHHHHHHHHHHHhccCCeEEcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666552222 22222225667765 5 788999999999875 5788899999999999999999999999999
Q ss_pred HHHHHHHcCCCHHHHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCC--cchhhHHHHHHHHHHHHHHhCCCChHH
Q 018506 244 ALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG--FASKLMAKDLNLALASAKEVGVDCPLT 321 (355)
Q Consensus 244 a~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~kd~~~~~~~a~~~gv~~pi~ 321 (355)
+..+|++.|+|.+++.+.+..... +. ...+.+| ++..+..||++++++.++++|+++|++
T Consensus 239 ~~~la~~~Gid~~~v~~~i~~~~r--ig----------------~~~~~pG~g~gg~c~~kD~~~l~~~A~~~gv~~pl~ 300 (478)
T 2y0c_A 239 LANLADRFGADIEAVRRGIGSDPR--IG----------------YHFLYAGCGYGGSCFPKDVEALIRTADEHGQSLQIL 300 (478)
T ss_dssp HHHHHHHTTCCHHHHHHHHHTSTT--TC----------------STTCCCSSCCCSSSHHHHHHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHhCCCHHHHHHHHhcCCc--cC----------------cccCCCCcccccCcCHHHHHHHHHHHHHcCCCcHHH
Confidence 999999999999999988874210 00 1123343 456688999999999999999999999
Q ss_pred HHHHHHHHHH
Q 018506 322 SQAQDIYAKL 331 (355)
Q Consensus 322 ~~~~~~~~~~ 331 (355)
++++++++..
T Consensus 301 ~~v~~in~~~ 310 (478)
T 2y0c_A 301 KAVSSVNATQ 310 (478)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988754
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.6e-30 Score=244.55 Aligned_cols=255 Identities=18% Similarity=0.205 Sum_probs=189.1
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCC-CCHHHH---------------hhcCCEEEEe
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK-ETPFEV---------------AEASDVVITM 108 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~-~s~~e~---------------~~~aDiVi~~ 108 (355)
-.|..|||+|.||.++|.+|+++||+|++|||++++++.+++...... ..++++ +++||+||+|
T Consensus 11 ~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~ttd~~~aDvvii~ 90 (431)
T 3ojo_A 11 GSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTTPEASDVFIIA 90 (431)
T ss_dssp -CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESSCCCCSEEEEC
T ss_pred CCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeCchhhCCEEEEE
Confidence 368999999999999999999999999999999999999987432221 111111 3479999999
Q ss_pred CCCch-----------HHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccC-CCCCceEEeCC
Q 018506 109 LPSSS-----------HVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKD-SWENPVMLDAP 176 (355)
Q Consensus 109 v~~~~-----------~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g-~~~~~~~~~~p 176 (355)
||++. .+..+...+.+.++ ++++||+.||+.|.+++++.+.+.+. .+. ...++.++++|
T Consensus 91 VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~-----~g~iVV~~STV~pgtt~~v~~~i~e~----~g~~~~~d~~v~~~P 161 (431)
T 3ojo_A 91 VPTPNNDDQYRSCDISLVMRALDSILPFLK-----KGNTIIVESTIAPKTMDDFVKPVIEN----LGFTIGEDIYLVHCP 161 (431)
T ss_dssp CCCCBCSSSSCBBCCHHHHHHHHHHGGGCC-----TTEEEEECSCCCTTHHHHTHHHHHHT----TTCCBTTTEEEEECC
T ss_pred eCCCccccccCCccHHHHHHHHHHHHHhCC-----CCCEEEEecCCChhHHHHHHHHHHHH----cCCCcCCCeEEEECC
Confidence 99986 25555544333332 56899999999999999998866431 110 01236899999
Q ss_pred CCCChHHHhc---CceEEEecCCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 018506 177 VSGGVLAAEA---GTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGI 253 (355)
Q Consensus 177 v~g~~~~~~~---g~~~~~~gg~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi 253 (355)
.+..+..+.. ....++.|++++..+.++++|+.++..+++++++++|+..|+++|.+.+..+++++|+..+|++.|+
T Consensus 162 e~~~~G~A~~~~~~p~~Iv~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~nE~~~l~e~~Gi 241 (431)
T 3ojo_A 162 ERVLPGKILEELVHNNRIIGGVTKACIEAGKRVYRTFVQGEMIETDARTAEMSKLMENTYRDVNIALANELTKICNNLNI 241 (431)
T ss_dssp CCCCTTSHHHHHHHSCEEEEESSHHHHHHHHHHHTTTCCSCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcCCCcchhhcccCCCEEEEeCCHHHHHHHHHHHHHHhCCcEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 8854443322 2337888899999999999999999888889999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 018506 254 SASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYA 329 (355)
Q Consensus 254 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~ 329 (355)
|.+++.++++.... + ..+ .-++|++..|+.||..++...+++.| ++++++.++-+
T Consensus 242 D~~~v~~~~~~~~r--i--~~l--------------~pG~G~GG~C~pkD~~~L~~~a~~~~---~li~~~~~iN~ 296 (431)
T 3ojo_A 242 NVLDVIEMANKHPR--V--NIH--------------QPGPGVGGHCLAVDPYFIIAKDPENA---KLIQTGREINN 296 (431)
T ss_dssp CHHHHHHHHTTSTT--C--CCC--------------CCCSCCCCCCBCSCC---------CC---HHHHHHHHHHH
T ss_pred CHHHHHHHHccCCC--c--ccC--------------CCCCCccccchhhhHHHHHHHHHHHh---HHHHHHHHHHH
Confidence 99999999975431 1 111 11346788899999999999999987 78877776544
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=99.97 E-value=6.2e-30 Score=249.54 Aligned_cols=255 Identities=13% Similarity=0.143 Sum_probs=189.7
Q ss_pred CceEEEEcccHHhHHHHHHHHHC--CCcEEEEeCChhHHHHHHh-------------------CCCCCCCCHHHHhhcCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKA--GYKMAVHDVNCNVMKMFSD-------------------MGVPTKETPFEVAEASD 103 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~--G~~V~v~dr~~~~~~~l~~-------------------~g~~~~~s~~e~~~~aD 103 (355)
+|||+|||+|.||.++|..|+++ ||+|++|||++++++.+++ .++..++++.++++++|
T Consensus 5 ~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~~aD 84 (467)
T 2q3e_A 5 IKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEAD 84 (467)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCS
T ss_pred ccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHHhcCC
Confidence 58999999999999999999999 8999999999999988653 23445678888899999
Q ss_pred EEEEeCCCchH--------------HHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCC
Q 018506 104 VVITMLPSSSH--------------VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWEN 169 (355)
Q Consensus 104 iVi~~v~~~~~--------------~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~ 169 (355)
+||+|||++.. +.+++..+.+.+ .++++||++||+.|.+.+.+.+.+.+. ......
T Consensus 85 vViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l-----~~g~iVV~~STv~~g~~~~l~~~l~~~-----~~~~~d 154 (467)
T 2q3e_A 85 LVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNS-----NGYKIVTEKSTVPVRAAESIRRIFDAN-----TKPNLN 154 (467)
T ss_dssp EEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTC-----CSEEEEEECSCCCTTHHHHHHHHHHHT-----CCTTCE
T ss_pred EEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhC-----CCCCEEEECCcCCchHHHHHHHHHHHh-----CCCCCC
Confidence 99999998754 233333322222 256799999999999988888777542 110011
Q ss_pred ceEEeCCCCC---ChHHHhcCceEEEecC-----CHHHHHHHHHHHHHc-CCCeEEeCCcchHHHHHHHHHHHHHHHHHH
Q 018506 170 PVMLDAPVSG---GVLAAEAGTLTFMVGG-----SEDAYQAAKPLFLSM-GKNTIYCGGAGNGAAAKICNNLTMAVSMLG 240 (355)
Q Consensus 170 ~~~~~~pv~g---~~~~~~~g~~~~~~gg-----~~~~~~~v~~ll~~~-g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~ 240 (355)
+.+...|... ...........+++|+ +++..+.++++|+.+ +..++++++++.+++.|++.|.+.+..+++
T Consensus 155 ~~V~~~Pe~~~~G~~~~d~~~~~rivvGg~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~ae~~Kl~~N~~~a~~ia~ 234 (467)
T 2q3e_A 155 LQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISS 234 (467)
T ss_dssp EEEEECCCCCCTTSHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHHTTTSCGGGEEEECHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEeCHHHhhcccchhhccCCCEEEECCCCCCCCHHHHHHHHHHHHHhccCCeEEecCHHHHHHHHHHHHHHHHHHHHH
Confidence 2333444331 1111112222377777 788899999999999 777889999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCC--C
Q 018506 241 VSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVD--C 318 (355)
Q Consensus 241 ~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~--~ 318 (355)
++|+..+|++.|+|.+++.++++.... +....+.| .+||+..++.||++++.+.+++.|++ .
T Consensus 235 ~nE~~~l~~~~Gid~~~v~~~~~~~~~--~~~~~~~p--------------g~g~gg~c~~kD~~~l~~~a~~~g~~~~~ 298 (467)
T 2q3e_A 235 INSISALCEATGADVEEVATAIGMDQR--IGNKFLKA--------------SVGFGGSCFQKDVLNLVYLCEALNLPEVA 298 (467)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHTSTT--TCSSSCCC--------------CSCCCSSSHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCcCHHHHHHHHcCCCC--CCccccCC--------------CCCCCCccHHHHHHHHHHHHHHcCCchHH
Confidence 999999999999999999999986532 11111111 23467889999999999999999987 3
Q ss_pred hHHHHHH
Q 018506 319 PLTSQAQ 325 (355)
Q Consensus 319 pi~~~~~ 325 (355)
++++++.
T Consensus 299 ~~~~~~~ 305 (467)
T 2q3e_A 299 RYWQQVI 305 (467)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.1e-29 Score=240.22 Aligned_cols=263 Identities=13% Similarity=0.140 Sum_probs=199.6
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC-------------------C-CCCCCCHHHHhhcCCEE
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-------------------G-VPTKETPFEVAEASDVV 105 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~-------------------g-~~~~~s~~e~~~~aDiV 105 (355)
|||+|||+|.||.++|..|+++||+|++|||++++++.+++. + +..++++.++++++|+|
T Consensus 1 mkI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~aDvv 80 (436)
T 1mv8_A 1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS 80 (436)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhccCCEE
Confidence 699999999999999999999999999999999999988763 2 44567888888999999
Q ss_pred EEeCCCchH---------HHHHhcCCCccccCCCCCCCeEEEEcCCCCHHH-HHHHHHHHhhchhhhccCCCCCceEEeC
Q 018506 106 ITMLPSSSH---------VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQT-SRNISAAVSNCILKEKKDSWENPVMLDA 175 (355)
Q Consensus 106 i~~v~~~~~---------~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~-~~~l~~~~~~~~~~~~~g~~~~~~~~~~ 175 (355)
|+|||++.. +++++..+.+.+... ..+++||++||+.|.+ .+.+.+.+.+.. ....+ .++.+...
T Consensus 81 iiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~--~~~~iVV~~Stv~~g~t~~~l~~~l~~~~-g~~~~--~~~~v~~~ 155 (436)
T 1mv8_A 81 FICVGTPSKKNGDLDLGYIETVCREIGFAIREK--SERHTVVVRSTVLPGTVNNVVIPLIEDCS-GKKAG--VDFGVGTN 155 (436)
T ss_dssp EECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTC--CSCCEEEECSCCCTTHHHHTHHHHHHHHH-SCCBT--TTBEEEEC
T ss_pred EEEcCCCcccCCCcchHHHHHHHHHHHHHhccc--CCCcEEEEeCCcCCCchHHHHHHHHHHhc-CcccC--CcEEEEEC
Confidence 999998865 788776655444310 0167999999999888 666766665310 00000 12344555
Q ss_pred CCCCC---hHHHhcCceEEEecCC-HHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 018506 176 PVSGG---VLAAEAGTLTFMVGGS-EDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSL 251 (355)
Q Consensus 176 pv~g~---~~~~~~g~~~~~~gg~-~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~ 251 (355)
|..-. ..........++.|++ ++..+.++++++.++..++. ++++.+.+.|++.|.+.+..+++++|+..+|++.
T Consensus 156 Pe~~~~G~~~~~~~~~~~iv~G~~~~~~~~~~~~l~~~~~~~v~~-~~~~~ae~~Kl~~N~~~a~~ia~~nE~~~l~~~~ 234 (436)
T 1mv8_A 156 PEFLRESTAIKDYDFPPMTVIGELDKQTGDLLEEIYRELDAPIIR-KTVEVAEMIKYTCNVWHAAKVTFANEIGNIAKAV 234 (436)
T ss_dssp CCCCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTSSSCEEE-EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccccccchhccCCCEEEEEcCCHHHHHHHHHHHhccCCCEEc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 65422 2222223335667765 88999999999999986555 7789999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCC--CcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 018506 252 GISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGG--GFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYA 329 (355)
Q Consensus 252 Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~ 329 (355)
|+|.+++.+++.... .+.. ..+.+.+ +|+..++.||++++.+.++++|+++|++++++++.+
T Consensus 235 Gid~~~v~~~~~~~~--r~~~--------------~~~~~~pg~g~gg~~~~kD~~~l~~~a~~~g~~~pl~~~v~~in~ 298 (436)
T 1mv8_A 235 GVDGREVMDVICQDH--KLNL--------------SRYYMRPGFAFGGSCLPKDVRALTYRASQLDVEHPMLGSLMRSNS 298 (436)
T ss_dssp TSCHHHHHHHHTTCT--TTTT--------------SSTTCSCCSCCCSSSHHHHHHHHHHHHHHTTCCCTTGGGHHHHHH
T ss_pred CCCHHHHHHHhcCCC--CCCC--------------cccCCCCcccccCcCcHhhHHHHHHHHHHcCCCcHHHHHHHHHHh
Confidence 999999999987521 0110 0113333 678889999999999999999999999999988755
Q ss_pred H
Q 018506 330 K 330 (355)
Q Consensus 330 ~ 330 (355)
.
T Consensus 299 ~ 299 (436)
T 1mv8_A 299 N 299 (436)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-28 Score=233.54 Aligned_cols=247 Identities=16% Similarity=0.118 Sum_probs=195.6
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCC------------------CCCCCHHHHhhcCCEEEE
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGV------------------PTKETPFEVAEASDVVIT 107 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~------------------~~~~s~~e~~~~aDiVi~ 107 (355)
|||+|||+|.||.++|..|++ ||+|++|||++++++.+++.+. ..++++.++++++|+||+
T Consensus 1 MkI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~aDvvii 79 (402)
T 1dlj_A 1 MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII 79 (402)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhcCCCEEEE
Confidence 699999999999999999999 9999999999999999987654 335677788889999999
Q ss_pred eCCCch----------HHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCC
Q 018506 108 MLPSSS----------HVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPV 177 (355)
Q Consensus 108 ~v~~~~----------~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv 177 (355)
|+|++. .+++++..+.+ +. ++++||++||+.|.+.+.+.+.+.+ -.+..+|.
T Consensus 80 avpt~~~~~~~~~dl~~v~~v~~~i~~-l~-----~~~iVV~~ST~~~g~~~~l~~~~~~------------~~v~~~Pe 141 (402)
T 1dlj_A 80 ATPTNYNSRINYFDTQHVETVIKEVLS-VN-----SHATLIIKSTIPIGFITEMRQKFQT------------DRIIFSPE 141 (402)
T ss_dssp CCCCCEETTTTEECCHHHHHHHHHHHH-HC-----SSCEEEECSCCCTTHHHHHHHHTTC------------SCEEECCC
T ss_pred ecCCCcccCCCCccHHHHHHHHHHHHh-hC-----CCCEEEEeCCCCccHHHHHHHHhCC------------CeEEECCc
Confidence 999874 58888766544 42 4579999999999998888876542 14667787
Q ss_pred CCChHHH---hcCceEEEecCCH-------HHHHHHHHHHHHcC-C-C-eEEeCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 018506 178 SGGVLAA---EAGTLTFMVGGSE-------DAYQAAKPLFLSMG-K-N-TIYCGGAGNGAAAKICNNLTMAVSMLGVSEA 244 (355)
Q Consensus 178 ~g~~~~~---~~g~~~~~~gg~~-------~~~~~v~~ll~~~g-~-~-~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea 244 (355)
+..+..+ ......+++|+++ +..+.+.++|...+ . . +++.++++.++|.|++.|.+.+..+++++|+
T Consensus 142 ~~~~G~a~~~~~~~~riviG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~nE~ 221 (402)
T 1dlj_A 142 FLRESKALYDNLYPSRIIVSCEENDSPKVKADAEKFALLLKSAAKKNNVPVLIMGASEAEAVKLFANTYLALRVAYFNEL 221 (402)
T ss_dssp CCCTTSTTHHHHSCSCEEEECCTTSCHHHHHHHHHHHHHHHHHCSCSCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcchhhcccCCCEEEEeCCCcccchhHHHHHHHHHHHhhhhccCCceEEecChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6443322 2233347788766 66778888887533 2 2 5788889999999999999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCC--CcchhhHHHHHHHHHHHHHHhCCCChHHH
Q 018506 245 LTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGG--GFASKLMAKDLNLALASAKEVGVDCPLTS 322 (355)
Q Consensus 245 ~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~kd~~~~~~~a~~~gv~~pi~~ 322 (355)
..+|++.|+|.+++.++++... +.. ...+.| ||+..++.||+.++...++ |+++|+++
T Consensus 222 ~~l~~~~Gid~~~v~~~~~~~~---ri~---------------~~~~~pg~g~gg~c~~kD~~~l~~~a~--~~~~~l~~ 281 (402)
T 1dlj_A 222 DTYAESRKLNSHMIIQGISYDD---RIG---------------MHYNNPSFGYGGYSLPKDTKQLLANYN--NIPQTLIE 281 (402)
T ss_dssp HHHHHHTTCCHHHHHHHHHTST---TTC---------------SSSCCCCSSCCSSHHHHHHHHHHHHHT--TSSCSHHH
T ss_pred HHHHHHhCCCHHHHHHHhccCC---CCC---------------cCCCCCCCccCCccHHhhHHHHHHHhc--CCChHHHH
Confidence 9999999999999999998653 110 112234 6788899999999998884 89999999
Q ss_pred HHHHHHHHH
Q 018506 323 QAQDIYAKL 331 (355)
Q Consensus 323 ~~~~~~~~~ 331 (355)
++.++.+.-
T Consensus 282 ~~~~~N~~~ 290 (402)
T 1dlj_A 282 AIVSSNNVR 290 (402)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 988766543
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.1e-27 Score=223.69 Aligned_cols=265 Identities=16% Similarity=0.201 Sum_probs=204.2
Q ss_pred CCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC--------------------CCCCCCCHHHHhhc
Q 018506 42 SCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM--------------------GVPTKETPFEVAEA 101 (355)
Q Consensus 42 ~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~--------------------g~~~~~s~~e~~~~ 101 (355)
...|.+|+|||+|.+|.++|..|+++||+|+++|.++++++.+++. ...++++..++++.
T Consensus 18 ~~~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt~~~~ai~~ 97 (444)
T 3vtf_A 18 GSHMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAESAEEAVAA 97 (444)
T ss_dssp TCCCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEECSSHHHHHHT
T ss_pred CCCCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEcCHHHHHhc
Confidence 3466799999999999999999999999999999999999888753 13456788899999
Q ss_pred CCEEEEeCCCch---------HHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceE
Q 018506 102 SDVVITMLPSSS---------HVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVM 172 (355)
Q Consensus 102 aDiVi~~v~~~~---------~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~ 172 (355)
+|++|+|||+|. .++++.+.+.+.++.. .++++||..||++|.+++++...+.++ ..++ ..+.+
T Consensus 98 ad~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~--~~g~lVV~eSTVppGtte~~~~~~l~~---~~~~--~~f~v 170 (444)
T 3vtf_A 98 TDATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAK--GRWHLVVVKSTVPPGTTEGLVARAVAE---EAGG--VKFSV 170 (444)
T ss_dssp SSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHH--CSCCEEEECSCCCTTTTTTHHHHHHHT---TTTT--CCCEE
T ss_pred CCceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhc--CCCeEEEEeCCCCCchHHHHHHHHHHH---hCCC--CCcee
Confidence 999999998862 4555555544444321 145799999999999998876554321 1122 24677
Q ss_pred EeCCCC---CChHHHhcCceEEEec-CCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018506 173 LDAPVS---GGVLAAEAGTLTFMVG-GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLG 248 (355)
Q Consensus 173 ~~~pv~---g~~~~~~~g~~~~~~g-g~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la 248 (355)
...|.+ |...........+++| .++++.+.++++++.+...++.+ ++..|++.|++.|.+.++.+++++|...+|
T Consensus 171 ~~~PErl~eG~a~~d~~~~~riViG~~~~~a~~~~~~ly~~~~~~~~~~-~~~~AE~~Kl~eN~~ravnIa~~NEla~ic 249 (444)
T 3vtf_A 171 ASNPEFLREGSALEDFFKPDRIVIGAGDERAASFLLDVYKAVDAPKLVM-KPREAELVKYASNVFLALKISFANEVGLLA 249 (444)
T ss_dssp EECCCCCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHTTTSCSCEEEE-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCcccccCCccccccccCCcEEEcCCCHHHHHHHHHHHhccCCCEEEe-chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788876 4444444444455655 47778899999999988766554 557999999999999999999999999999
Q ss_pred HHcCCCHHHHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 018506 249 QSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIY 328 (355)
Q Consensus 249 ~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~ 328 (355)
+++|+|..++.++++.... +....+ .-++|++..|+.||..++...+++.|++.++++++.++-
T Consensus 250 e~~GiDv~eV~~a~~~d~r--ig~~~l--------------~PG~G~GG~CipkD~~~L~~~a~~~g~~~~li~a~~~iN 313 (444)
T 3vtf_A 250 KRLGVDTYRVFEAVGLDKR--IGRHYF--------------GAGLGFGGSCFPKDTLAFIRFGESLGLEMAISKAVLRVN 313 (444)
T ss_dssp HHTTCCHHHHHHHHHTSTT--SCSTTC--------------CCSSCCCTTTHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHhccCCC--CCCCCC--------------CCCCCCCCcccCcCHHHHHHHHHhcCCCHHHHHhhHHHH
Confidence 9999999999999975321 111111 113567889999999999999999999999999988766
Q ss_pred HH
Q 018506 329 AK 330 (355)
Q Consensus 329 ~~ 330 (355)
+.
T Consensus 314 ~~ 315 (444)
T 3vtf_A 314 EY 315 (444)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.2e-29 Score=234.28 Aligned_cols=299 Identities=16% Similarity=0.121 Sum_probs=206.0
Q ss_pred ccCCCCCCCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCC--------------CCCCCCHHHHhh
Q 018506 35 FFSSQVPSCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG--------------VPTKETPFEVAE 100 (355)
Q Consensus 35 ~~~~~~~~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g--------------~~~~~s~~e~~~ 100 (355)
|+.+++..+.+|||+|||+|.||+++|..|+++||+|++|+|++++++.+++.+ +..++++.++++
T Consensus 19 ~~~~~~m~~~~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~ 98 (356)
T 3k96_A 19 YFQSNAMEPFKHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLE 98 (356)
T ss_dssp --------CCCSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHT
T ss_pred hhhhhcccccCCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHh
Confidence 333333334568999999999999999999999999999999999999887743 234578889999
Q ss_pred cCCEEEEeCCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCC-HHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCC
Q 018506 101 ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID-PQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSG 179 (355)
Q Consensus 101 ~aDiVi~~v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~-~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g 179 (355)
++|+||+++|. +.+++++..+.+.+. +++++|+++++. +.+ +.+.+.+.+. + ++ ..+.++++|.+.
T Consensus 99 ~aDvVilaVp~-~~~~~vl~~i~~~l~-----~~~ivvs~~kGi~~~t-~~~se~i~~~-l---~~--~~~~vlsgP~~a 165 (356)
T 3k96_A 99 GVTDILIVVPS-FAFHEVITRMKPLID-----AKTRIAWGTKGLAKGS-RLLHEVVATE-L---GQ--VPMAVISGPSLA 165 (356)
T ss_dssp TCCEEEECCCH-HHHHHHHHHHGGGCC-----TTCEEEECCCSCBTTT-BCHHHHHHHH-H---CS--CCEEEEESSCCH
T ss_pred cCCEEEECCCH-HHHHHHHHHHHHhcC-----CCCEEEEEeCCCCcCc-cCHHHHHHHH-c---CC--CCEEEEECccHH
Confidence 99999999996 588999887666653 456888887754 443 3344433321 1 11 125688999876
Q ss_pred ChHHHhcCceEEEecCCHHHHHHHHHHHHHcCCCeEEeCCcch-----------------HHHHHHHHHHHHHHHHHHHH
Q 018506 180 GVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGN-----------------GAAAKICNNLTMAVSMLGVS 242 (355)
Q Consensus 180 ~~~~~~~g~~~~~~gg~~~~~~~v~~ll~~~g~~~~~~g~~g~-----------------a~~~Kl~~n~~~~~~~~~~~ 242 (355)
........+..++.+.+++..+.++++|+..+.+++...++-. +..+|+..|...+.+..+++
T Consensus 166 ~ev~~g~pt~~via~~~~~~~~~v~~lf~~~~~rv~~~~Di~g~e~~galkNviaia~G~~~gl~~g~N~~aal~~~~l~ 245 (356)
T 3k96_A 166 TEVAANLPTAVSLASNNSQFSKDLIERLHGQRFRVYKNDDMIGVELCGSVKNILAIATGISDGLKLGSNARAALITRGLT 245 (356)
T ss_dssp HHHHTTCCEEEEEEESCHHHHHHHHHHHCCSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHcCCCeEEEEecCCHHHHHHHHHHhCCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 6555555555666778999999999999999988887777433 33456777778888999999
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhcCC--CcccccCCCCCCCcc--cCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCC
Q 018506 243 EALTLGQSLGISASTLTKILNSSSA--RCWSSDSYNPVPGVM--EGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDC 318 (355)
Q Consensus 243 Ea~~la~~~Gi~~~~~~~~~~~~~~--~s~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~ 318 (355)
|+.+++++.|++++++.++...++. ++.....+++..+.. +|+..+.-...-..+....++.+.+.++++++|+++
T Consensus 246 E~~~l~~a~G~~~~t~~gl~g~gDl~~tc~s~~sRN~~~G~~l~~g~~~~~~~~~~~~~~eG~~t~~~~~~la~~~~v~~ 325 (356)
T 3k96_A 246 EMGRLVSVFGGKQETLTGLAGLGDLVLTCTDNQSRNRRFGLALGEGVDKKEAQQAIGQAIEGLYNTDQVHALAQKHAIEM 325 (356)
T ss_dssp HHHHHHHHTTCCHHHHTSTTTHHHHHHHHHCTTCHHHHHHHHHHHTCCHHHHHHHHCSCCSHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHhCCChHhhcccchhhHHHHhccCCCCccHHHHHHHHCCCCHHHHHHHcCCccchHHHHHHHHHHHHHcCCCC
Confidence 9999999999999998865333321 111101111111111 110000000000134467788999999999999999
Q ss_pred hHHHHHHHHHHHHHHCCCCCCcHHHHHHHHhcCCC
Q 018506 319 PLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGKD 353 (355)
Q Consensus 319 pi~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~~~~ 353 (355)
|+++++++++. ++.+....++.+..+..
T Consensus 326 Pi~~~v~~il~-------~~~~~~~~~~~l~~r~~ 353 (356)
T 3k96_A 326 PLTFQVHRILH-------EDLDPQQAVQELLERSP 353 (356)
T ss_dssp HHHHHHHHHHH-------SCCCHHHHHHHHHSCC-
T ss_pred cHHHHHHHHHh-------CCCCHHHHHHHHHcCCC
Confidence 99999999986 66677777777766543
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-26 Score=212.78 Aligned_cols=268 Identities=13% Similarity=0.127 Sum_probs=188.0
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCC------------CCHHHHhh---cCCEEEEe
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK------------ETPFEVAE---ASDVVITM 108 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~------------~s~~e~~~---~aDiVi~~ 108 (355)
.||||+|||+|.||+.+|..|+++||+|++|+|++++++.+.+.|.... .+..++.+ ++|+||+|
T Consensus 2 ~~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~ 81 (316)
T 2ew2_A 2 NAMKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDLIIAL 81 (316)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSEEEEC
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCCEEEEE
Confidence 4689999999999999999999999999999999999998877553221 13445444 89999999
Q ss_pred CCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCC--hHHHhc
Q 018506 109 LPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGG--VLAAEA 186 (355)
Q Consensus 109 v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~--~~~~~~ 186 (355)
+|. ..+++++..+.+.+. ++++|++++++.. ..+.+.+.+++..+. . +..+..++..++ +.....
T Consensus 82 v~~-~~~~~v~~~l~~~l~-----~~~~iv~~~~g~~-~~~~l~~~~~~~~vi--~----g~~~~~~~~~~p~~~~~~~~ 148 (316)
T 2ew2_A 82 TKA-QQLDAMFKAIQPMIT-----EKTYVLCLLNGLG-HEDVLEKYVPKENIL--V----GITMWTAGLEGPGRVKLLGD 148 (316)
T ss_dssp SCH-HHHHHHHHHHGGGCC-----TTCEEEECCSSSC-THHHHTTTSCGGGEE--E----EEECCCCEEEETTEEEECSC
T ss_pred ecc-ccHHHHHHHHHHhcC-----CCCEEEEecCCCC-cHHHHHHHcCCccEE--E----EEeeeeeEEcCCCEEEEecC
Confidence 996 478888876655543 4578999887543 234444444321100 0 122333333331 222345
Q ss_pred CceEEEe--cCCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHH---------------------HHHHHHHHH
Q 018506 187 GTLTFMV--GGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM---------------------AVSMLGVSE 243 (355)
Q Consensus 187 g~~~~~~--gg~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~---------------------~~~~~~~~E 243 (355)
+.+.+.. +++++..+.++++|+.+|.++++.++.+.+.|.|++.|... ..+..++.|
T Consensus 149 g~~~i~~~~~~~~~~~~~~~~ll~~~g~~~~~~~d~~~~~~~Kl~~N~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~E 228 (316)
T 2ew2_A 149 GEIELENIDPSGKKFALEVVDVFQKAGLNPSYSSNVRYSIWRKACVNGTLNGLCTILDCNIAEFGALPVSESLVKTLISE 228 (316)
T ss_dssp CCEEEEESSGGGHHHHHHHHHHHHHTTCCEEECTTHHHHHHHHHHHHTTHHHHHHHHTCCHHHHHTSTTHHHHHHHHHHH
T ss_pred CcEEEeecCCCccHHHHHHHHHHHhCCCCcEEchhHHHHHHHHHHHhhhHHHHHHHhCCcHHHHHhCHHHHHHHHHHHHH
Confidence 6655543 45788899999999999999889999999999999999642 456788999
Q ss_pred HHHHHHHcCCCH--HHHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCC-CCCcchhhHHHHHHHHHHHHHHhCCCChH
Q 018506 244 ALTLGQSLGISA--STLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNY-GGGFASKLMAKDLNLALASAKEVGVDCPL 320 (355)
Q Consensus 244 a~~la~~~Gi~~--~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~kd~~~~~~~a~~~gv~~pi 320 (355)
++.++++.|+++ +.+.+.+............. +.+. .|+ ..++..+ ..+++++++++++++|+++|+
T Consensus 229 ~~~la~~~G~~~~~~~~~~~~~~~~~~~~~~~~~---~sm~------~d~~~~g~~~E-~~~~~~~~~~~a~~~gv~~P~ 298 (316)
T 2ew2_A 229 FAAVAEKEAIYLDQAEVYTHIVQTYDPNGIGLHY---PSMY------QDLIKNHRLTE-IDYINGAVWRKGQKYNVATPF 298 (316)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHTTCTTTTTTSC---CHHH------HHHTTTCCCCS-GGGTHHHHHHHHHHHTCCCHH
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHhccccCCCCC---cHHH------HHHHHcCCcch-HHHHhhHHHHHHHHhCCCCCH
Confidence 999999999986 56667776532111001111 1111 234 4445445 789999999999999999999
Q ss_pred HHHHHHHHHHHHHC
Q 018506 321 TSQAQDIYAKLCEN 334 (355)
Q Consensus 321 ~~~~~~~~~~~~~~ 334 (355)
++.++++++..+..
T Consensus 299 ~~~~~~~~~~~~~~ 312 (316)
T 2ew2_A 299 CAMLTQLVHGKEEL 312 (316)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999987654
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-26 Score=219.39 Aligned_cols=298 Identities=13% Similarity=0.099 Sum_probs=188.8
Q ss_pred ccccCCCCCCCCCc-eEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCC--------------CCCCCCHHH
Q 018506 33 RRFFSSQVPSCQFE-SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG--------------VPTKETPFE 97 (355)
Q Consensus 33 ~~~~~~~~~~~~~m-kIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g--------------~~~~~s~~e 97 (355)
+.|..+....+.+| ||+|||+|+||.++|..|+++||+|++|||++++++.+.+.+ +..++++.+
T Consensus 2 ~~~~~~~~~~~m~M~kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (366)
T 1evy_A 2 STKQHSAKDELLYLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEK 81 (366)
T ss_dssp -------CCCCCCEEEEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHH
T ss_pred ccchhhhhhHhhccCeEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccccccccccceeeeCCHHH
Confidence 34555444334434 999999999999999999999999999999999998887642 234567888
Q ss_pred HhhcCCEEEEeCCCchHHHHHhcC----CCccccCCCCCC-CeEEEEcCC-CCHHHHHHHHHHHhhchhhhccCCCCCce
Q 018506 98 VAEASDVVITMLPSSSHVLDVYNG----PNGLLQGGNSVR-PQLLIDSST-IDPQTSRNISAAVSNCILKEKKDSWENPV 171 (355)
Q Consensus 98 ~~~~aDiVi~~v~~~~~~~~vl~~----~~~~l~~~~~~~-~~ivi~~st-~~~~~~~~l~~~~~~~~~~~~~g~~~~~~ 171 (355)
+++++|+||+|+|+ .++++++.. +.+.+. + +++||++++ ..+...+.+.+.+.+. .+. ....
T Consensus 82 ~~~~aDvVilav~~-~~~~~v~~~~~~gl~~~l~-----~~~~ivv~~~~gi~~~~~~~~~~~l~~~-----~~~-~~~~ 149 (366)
T 1evy_A 82 AYNGAEIILFVIPT-QFLRGFFEKSGGNLIAYAK-----EKQVPVLVCTKGIERSTLKFPAEIIGEF-----LPS-PLLS 149 (366)
T ss_dssp HHTTCSSEEECCCH-HHHHHHHHHHCHHHHHHHH-----HHTCCEEECCCSCCTTTCCCHHHHHTTT-----SCG-GGEE
T ss_pred HHcCCCEEEECCCh-HHHHHHHHHhHHHHHHhcC-----ccCCEEEEECCcCCCccccCHHHHHHHH-----CCC-CcEE
Confidence 88999999999996 688888876 544442 3 568888884 4554444455554321 110 0134
Q ss_pred EEeCCCCCChHHHhcCceEEEecCCHHHHHHHHHHHHHc--CCCeEEeCCcchHHHHHHH-----------------HHH
Q 018506 172 MLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSM--GKNTIYCGGAGNGAAAKIC-----------------NNL 232 (355)
Q Consensus 172 ~~~~pv~g~~~~~~~g~~~~~~gg~~~~~~~v~~ll~~~--g~~~~~~g~~g~a~~~Kl~-----------------~n~ 232 (355)
+...|..............++.+++++..+.++++|+.. +.++++.+++-...|.|++ +|.
T Consensus 150 v~~gp~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~g~g~~~~~~~di~~~~~~k~~~n~~~~~~~~~~~~~~~~n~ 229 (366)
T 1evy_A 150 VLAGPSFAIEVATGVFTCVSIASADINVARRLQRIMSTGDRSFVCWATTDTVGCEVASAVKNVLAIGSGVANGLGMGLNA 229 (366)
T ss_dssp EEESSCCHHHHHTTCCEEEEEECSSHHHHHHHHHHHSCTTSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred EEeCCChHHHHHhCCceEEEEecCCHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHHhHHHHHHHHHhhccCCccH
Confidence 555665432222222233455567888999999999999 8777777875455555544 555
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcC----CCcccccCCCCCCCcccCCCCCCCC-CCCcchhhHHHHHHHH
Q 018506 233 TMAVSMLGVSEALTLGQSLGISASTLTKILNSSS----ARCWSSDSYNPVPGVMEGVPASRNY-GGGFASKLMAKDLNLA 307 (355)
Q Consensus 233 ~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~----~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~kd~~~~ 307 (355)
.......++.|++.++++.|++++++.++...+. ..++.+..+.....+..++..+ +. ...+......||++.+
T Consensus 230 ~~~~~~~~~~E~~~la~a~Gi~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~e~~~~~~~v 308 (366)
T 1evy_A 230 RAALIMRGLLEIRDLTAALGGDGSAVFGLAGLGDLQLTCSSELSRNFTVGKKLGKGLPIE-EIQRTSKAVAEGVATADPL 308 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCTTTTSTTTHHHHHHHHTCTTSHHHHHHHHHHTTCCHH-HHHC---CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCccccccccchhheeeecCCCCchHHHHHHHhCCCCHH-HHHHHcCCeeehHHHHHHH
Confidence 6677789999999999999999876643211100 0011111000000111110000 00 0012233567999999
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHHHHHHHhc
Q 018506 308 LASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 350 (355)
Q Consensus 308 ~~~a~~~gv~~pi~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~ 350 (355)
+++++++|+++|+++.++++++. ..+...+++.+..
T Consensus 309 ~~~a~~~gv~~P~~~~v~~~~~~-------~~~~~~~~~~l~~ 344 (366)
T 1evy_A 309 MRLAKQLKVKMPLCHQIYEIVYK-------KKNPRDALADLLS 344 (366)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHS-------CCCHHHHHHHHGG
T ss_pred HHHHHHhCCCCcHHHHHHHHHHC-------CCCHHHHHHHHHc
Confidence 99999999999999999998873 3455566665544
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.5e-25 Score=206.52 Aligned_cols=280 Identities=13% Similarity=0.116 Sum_probs=186.9
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCC-----------CCCCCCHHHHhhcCCEEEEeCCCc
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG-----------VPTKETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g-----------~~~~~s~~e~~~~aDiVi~~v~~~ 112 (355)
..|||+|||+|+||++|+.+|+++||+|++|+|++++++.+++.| +..++++.+ ++.+|+||+|||+
T Consensus 13 ~~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~aDvVil~vk~- 90 (335)
T 1z82_A 13 MEMRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IKKEDILVIAIPV- 90 (335)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CCTTEEEEECSCG-
T ss_pred cCCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hcCCCEEEEECCH-
Confidence 458999999999999999999999999999999999999998765 355678888 8899999999996
Q ss_pred hHHHHHhcCCCccccCCCCCCCeEEEEcCCC-CHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceE-
Q 018506 113 SHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI-DPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLT- 190 (355)
Q Consensus 113 ~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~-~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~- 190 (355)
.++++++..+.+ +++++|+++++ .+.+.+.+.+.+.+. .+ ....+...|... .....+.+.
T Consensus 91 ~~~~~v~~~l~~--------~~~~vv~~~nGi~~~~~~~l~~~~~~~-----~~--~~~~~~~~P~~~--~~~~~g~~~~ 153 (335)
T 1z82_A 91 QYIREHLLRLPV--------KPSMVLNLSKGIEIKTGKRVSEIVEEI-----LG--CPYAVLSGPSHA--EEVAKKLPTA 153 (335)
T ss_dssp GGHHHHHTTCSS--------CCSEEEECCCCCCTTTCCCHHHHHHHH-----TC--CCEEEEESSCCH--HHHHTTCCEE
T ss_pred HHHHHHHHHhCc--------CCCEEEEEeCCCCCCccCcHHHHHHHH-----cC--CceEEEECCccH--HHHhCCCceE
Confidence 699999876432 34689999854 555445566665431 11 124556667542 223345533
Q ss_pred EEecCCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHcCC
Q 018506 191 FMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKIC-----------------NNLTMAVSMLGVSEALTLGQSLGI 253 (355)
Q Consensus 191 ~~~gg~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~-----------------~n~~~~~~~~~~~Ea~~la~~~Gi 253 (355)
+..++++ ++.++++|+..+.++++.+++-...|-|++ +|........++.|++.++++.|+
T Consensus 154 ~~~g~~~--~~~~~~ll~~~g~~~~~~~di~~~~~~k~l~N~~~~~~g~~~g~~~~~n~~~a~~~~~~~E~~~la~a~G~ 231 (335)
T 1z82_A 154 VTLAGEN--SKELQKRISTEYFRVYTCEDVVGVEIAGALKNVIAIAAGILDGFGGWDNAKAALETRGIYEIARFGMFFGA 231 (335)
T ss_dssp EEEEETT--HHHHHHHHCCSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEEehh--HHHHHHHhCCCCEEEEecCchHHHHHHHHHHhHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHhCC
Confidence 3334333 788999999999888877775444454444 444556677899999999999999
Q ss_pred CHHHHHHHHHhcC----CCcccccCCCCCCCcccCCCCCCCC-CCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 018506 254 SASTLTKILNSSS----ARCWSSDSYNPVPGVMEGVPASRNY-GGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIY 328 (355)
Q Consensus 254 ~~~~~~~~~~~~~----~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~ 328 (355)
+++++.++...+. ..++....+.....+..++..+ +. ...+......||++.+++++++.|+++|+++++++++
T Consensus 232 ~~~~~~~l~~~~~~~~t~~s~~~~n~~~~~~~~~g~~~~-~~~~~~g~~~e~~~~~~~v~~~a~~~gv~~P~~~~v~~~~ 310 (335)
T 1z82_A 232 DQKTFMGLAGIGDLMVTCNSRYSRNRRFGELIARGFNPL-KLLESSNQVVEGAFTVKAVMKIAKENKIDMPISEEVYRVV 310 (335)
T ss_dssp CHHHHTSTTTHHHHHHHHHCTTCHHHHHHHHHHHTCCHH-HHHHTCSSCCTHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred ChhhhcccccccceeeeccCccCcHHHHHHHHhCCCCHH-HHHHhcCCeeeHHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 9988765321100 0011100000000011110000 00 0012234567999999999999999999999999988
Q ss_pred HHHHHCCCCCCcHHHHHHHHhcCC
Q 018506 329 AKLCENGHDSKDFSCVFQHYYGGK 352 (355)
Q Consensus 329 ~~~~~~g~g~~d~~~~~~~~~~~~ 352 (355)
+ ...+...+++.+..+.
T Consensus 311 ~-------~~~~~~~~~~~l~~~~ 327 (335)
T 1z82_A 311 Y-------EGKPPLQSMRDLMRRS 327 (335)
T ss_dssp H-------SCCCHHHHHHHHHC--
T ss_pred h-------CCCCHHHHHHHHHcCC
Confidence 5 4556777777766543
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.91 E-value=9.3e-25 Score=202.56 Aligned_cols=260 Identities=11% Similarity=0.067 Sum_probs=173.4
Q ss_pred CCceEEEEcccHHhHHHHHHHHHC-----C-CcEEEEeCChhHHHHHHh-CCCCCCC-------------CHHHHhhcCC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKA-----G-YKMAVHDVNCNVMKMFSD-MGVPTKE-------------TPFEVAEASD 103 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~-----G-~~V~v~dr~~~~~~~l~~-~g~~~~~-------------s~~e~~~~aD 103 (355)
.+|||+|||+|.||+++|..|+++ | |+|++|+| +++++.+++ .|+.... +..+.++.+|
T Consensus 7 ~~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D 85 (317)
T 2qyt_A 7 QPIKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAEVGTVD 85 (317)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHHHTSEEEECSSCEEEECCSEEESCHHHHCCEE
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHhcCCeEEEeCCCCeEEecceEecCccccCCCC
Confidence 347999999999999999999999 9 99999999 888999988 6654432 3445678999
Q ss_pred EEEEeCCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCC--Ch
Q 018506 104 VVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSG--GV 181 (355)
Q Consensus 104 iVi~~v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g--~~ 181 (355)
+||+|+|.. ++++++..+.+.+. ++++||+++++. ...+.+.+.++... ...+..+.++++.+ ..
T Consensus 86 ~vil~vk~~-~~~~v~~~i~~~l~-----~~~~iv~~~nG~-~~~~~l~~~l~~~~------v~~g~~~~~a~~~~pg~~ 152 (317)
T 2qyt_A 86 YILFCTKDY-DMERGVAEIRPMIG-----QNTKILPLLNGA-DIAERMRTYLPDTV------VWKGCVYISARKSAPGLI 152 (317)
T ss_dssp EEEECCSSS-CHHHHHHHHGGGEE-----EEEEEEECSCSS-SHHHHHTTTSCTTT------BCEEEEEEEEEEEETTEE
T ss_pred EEEEecCcc-cHHHHHHHHHhhcC-----CCCEEEEccCCC-CcHHHHHHHCCCCc------EEEEEEEEEEEEcCCCEE
Confidence 999999986 67888876555543 346888887764 33344444443210 01124455666553 22
Q ss_pred HHHhcCceEEEe----cCCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHH-------------------HHH
Q 018506 182 LAAEAGTLTFMV----GGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA-------------------VSM 238 (355)
Q Consensus 182 ~~~~~g~~~~~~----gg~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~-------------------~~~ 238 (355)
.....+...++. +++.+.. .++++|+..|.++++.++++.+.|.|++.|.... ...
T Consensus 153 ~~~~~g~~~~ig~~~~~~~~~~~-~~~~ll~~~g~~~~~~~di~~~~~~Kl~~N~~~~~~~al~g~~~g~~~~~~~~~~~ 231 (317)
T 2qyt_A 153 TLEADRELFYFGSGLPEQTDDEV-RLAELLTAAGIRAYNPTDIDWYIMKKFMMISVTATATAYFDKPIGSILTEHEPELL 231 (317)
T ss_dssp EEEEEEEEEEEECCSSSCCHHHH-HHHHHHHHTTCCEECCSCHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHCHHHHH
T ss_pred EEcCCCceEEEcCCCCCCcCHHH-HHHHHHHHCCCCCEEchHHHHHHHHHHHHHHhhHHHHHHHCCCHHHHHHHHHHHHH
Confidence 223344433232 2346777 8999999999988999999999999999998764 345
Q ss_pred HHHHHHHHHHHHcCCCHH--HHHHHHHhcCCCcccccCCC-CCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhC
Q 018506 239 LGVSEALTLGQSLGISAS--TLTKILNSSSARCWSSDSYN-PVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVG 315 (355)
Q Consensus 239 ~~~~Ea~~la~~~Gi~~~--~~~~~~~~~~~~s~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g 315 (355)
.++.|++.++++.|++++ .+.+.+...... ...... +..++..++..+.++ .+++++++++++|
T Consensus 232 ~~~~E~~~v~~a~G~~~~~~~~~~~~~~~~~~--~~~~~~sm~~d~~~g~~~E~~~-----------~~g~~~~~a~~~g 298 (317)
T 2qyt_A 232 SLLEEVAELFRAKYGQVPDDVVQQLLDKQRKM--PPESTSSMHSDFLQGGSTEVET-----------LTGYVVREAEALR 298 (317)
T ss_dssp HHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHC----------------------CT-----------TTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHhcc--CCCCCChHHHHHHcCCccCHHH-----------HhhHHHHHHHHcC
Confidence 889999999999999864 566666542110 001111 111122222221111 2678999999999
Q ss_pred CCChHHHHHHHHHHHH
Q 018506 316 VDCPLTSQAQDIYAKL 331 (355)
Q Consensus 316 v~~pi~~~~~~~~~~~ 331 (355)
+++|+++.++++++..
T Consensus 299 v~~P~~~~~~~~~~~~ 314 (317)
T 2qyt_A 299 VDLPMYKRMYRELVSR 314 (317)
T ss_dssp CCCHHHHHHHHTTCC-
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999887643
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-23 Score=195.65 Aligned_cols=269 Identities=14% Similarity=0.066 Sum_probs=187.5
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeC--ChhHHHHHHhCCC-----------CCCC--CHHHHhhcCCEEEEeCC
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDV--NCNVMKMFSDMGV-----------PTKE--TPFEVAEASDVVITMLP 110 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr--~~~~~~~l~~~g~-----------~~~~--s~~e~~~~aDiVi~~v~ 110 (355)
|||+|||+|.||+++|..|+++||+|++|+| ++++++.+.+.+. ..++ ++.++++++|+||+|+|
T Consensus 1 m~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~vi~~v~ 80 (335)
T 1txg_A 1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS 80 (335)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhcCCEEEEcCC
Confidence 6899999999999999999999999999999 9999999887653 2344 67788889999999999
Q ss_pred CchHHHHHhcCCCccccCCCCCCCeEEEEcCCCC----HHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhc
Q 018506 111 SSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID----PQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEA 186 (355)
Q Consensus 111 ~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~----~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~ 186 (355)
.+ ++++++..+.+ +. ++++||+++++. |...+.+.+.+++. .++.. ...+...|.. ......
T Consensus 81 ~~-~~~~v~~~i~~-l~-----~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~----~g~~~-~~~~~~~p~~--~~~~~~ 146 (335)
T 1txg_A 81 TD-GVLPVMSRILP-YL-----KDQYIVLISKGLIDFDNSVLTVPEAVWRLK----HDLRE-RTVAITGPAI--AREVAK 146 (335)
T ss_dssp GG-GHHHHHHHHTT-TC-----CSCEEEECCCSEEEETTEEEEHHHHHHTTS----TTCGG-GEEEEESSCC--HHHHHT
T ss_pred hH-HHHHHHHHHhc-CC-----CCCEEEEEcCcCccCCCCcCccHHHHHHHh----cCCCC-cEEEEECCCc--HHHHHc
Confidence 76 78888876555 43 456888988543 34445566666431 01100 1233444532 222333
Q ss_pred Cc--eEEEecCCHHHHHHHHHHHHHcCCCeEEeCCcchHHHH-----------------HHH-----HHHHHHHHHHHHH
Q 018506 187 GT--LTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAA-----------------KIC-----NNLTMAVSMLGVS 242 (355)
Q Consensus 187 g~--~~~~~gg~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~-----------------Kl~-----~n~~~~~~~~~~~ 242 (355)
+. ..++.+.+++..+.++++|+..+.++++.+++....|. |+. +|.....+..++.
T Consensus 147 g~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~~~~di~~~~~~k~~~N~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~ 226 (335)
T 1txg_A 147 RMPTTVVFSSPSESSANKMKEIFETEYFGVEVTTDIIGTEITSALKNVYSIAIAWIRGYESRKNVEMSNAKGVIATRAIN 226 (335)
T ss_dssp TCCEEEEEECSCHHHHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred cCCcEEEEEeCCHHHHHHHHHHhCCCcEEEEecCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHH
Confidence 43 34455567889999999999999888888887666665 555 6766677888999
Q ss_pred HHHHHHHHcCCCHHHHH------HHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCCcc--------------hhhHHH
Q 018506 243 EALTLGQSLGISASTLT------KILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFA--------------SKLMAK 302 (355)
Q Consensus 243 Ea~~la~~~Gi~~~~~~------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~k 302 (355)
|+..++++.|++++++. +.+..... +.... + ...+.++++ .....|
T Consensus 227 E~~~la~~~G~~~~~~~~~~~~~~~~~~~~~-~~~~~--------~-----~~~~~~~~s~~~d~~~~~~~~~~~~E~~~ 292 (335)
T 1txg_A 227 EMAELIEILGGDRETAFGLSGFGDLIATFRG-GRNGM--------L-----GELLGKGLSIDEAMEELERRGVGVVEGYK 292 (335)
T ss_dssp HHHHHHHHHTSCGGGGGSTTTHHHHHHTTTC-HHHHH--------H-----HHHHHTTCCHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHCCCcchhhcccchhheeecccc-CccHH--------H-----HHHHhCCCCHHHHHHHhccCCceecchHH
Confidence 99999999999987664 44433211 10000 0 001111221 234459
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHHHHHHHh
Q 018506 303 DLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYY 349 (355)
Q Consensus 303 d~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g~g~~d~~~~~~~~~ 349 (355)
|+++++++++++|+++|+++.++++++. ..+...+++.+.
T Consensus 293 ~~~~~~~~a~~~gv~~P~~~~~~~~~~~-------~~~~~~~~~~l~ 332 (335)
T 1txg_A 293 TAEKAYRLSSKINADTKLLDSIYRVLYE-------GLKVEEVLFELA 332 (335)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHS-------CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHhC-------CCCHHHHHHHHH
Confidence 9999999999999999999999998863 236666666554
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=6.1e-25 Score=201.18 Aligned_cols=256 Identities=11% Similarity=0.072 Sum_probs=175.7
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCC--C------CCCCHHHHhhcCCEEEEeCCCchHHHH
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGV--P------TKETPFEVAEASDVVITMLPSSSHVLD 117 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~--~------~~~s~~e~~~~aDiVi~~v~~~~~~~~ 117 (355)
|||+|||+|.||+++|..|+++||+|++|+|++++.+.+...+. . ..++ .+.++++|+||+|+|.+ ++++
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~d~vi~~v~~~-~~~~ 78 (291)
T 1ks9_A 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTAND-PDFLATSDLLLVTLKAW-QVSD 78 (291)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESC-HHHHHTCSEEEECSCGG-GHHH
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCCEEEEEcCccceeeEEEEcCCCceeeeeeeecC-ccccCCCCEEEEEecHH-hHHH
Confidence 68999999999999999999999999999999887665544321 1 1233 46778999999999986 6788
Q ss_pred HhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEe-cCC
Q 018506 118 VYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMV-GGS 196 (355)
Q Consensus 118 vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~-gg~ 196 (355)
++..+.+.+. ++++|++++++. ...+.+.+.+++ + ..|......+.+.| . +.....|.+.+.. +++
T Consensus 79 v~~~l~~~l~-----~~~~vv~~~~g~-~~~~~l~~~~~~--~--~~g~~~~~~~~~~p-~--~~~~~~g~~~i~~~~~~ 145 (291)
T 1ks9_A 79 AVKSLASTLP-----VTTPILLIHNGM-GTIEELQNIQQP--L--LMGTTTHAARRDGN-V--IIHVANGITHIGPARQQ 145 (291)
T ss_dssp HHHHHHTTSC-----TTSCEEEECSSS-CTTGGGTTCCSC--E--EEEEECCEEEEETT-E--EEEEECCCEEEEESSGG
T ss_pred HHHHHHhhCC-----CCCEEEEecCCC-CcHHHHHHhcCC--e--EEEEEeEccEEcCC-E--EEEecccceEEccCCCC
Confidence 8876544442 456888886654 222333333221 0 00100001134455 2 3334566655544 456
Q ss_pred HHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHcCCCH--H
Q 018506 197 EDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM------------------AVSMLGVSEALTLGQSLGISA--S 256 (355)
Q Consensus 197 ~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~------------------~~~~~~~~Ea~~la~~~Gi~~--~ 256 (355)
++.++.++++|+..|.++++.++++.+.|.|++.|... ..+..++.|++.++++.|++. +
T Consensus 146 ~~~~~~~~~ll~~~g~~~~~~~~~~~~~~~Kl~~n~~~n~~tal~~~~~g~~~~~~~~~~~~~~E~~~va~a~G~~~~~~ 225 (291)
T 1ks9_A 146 DGDYSYLADILQTVLPDVAWHNNIRAELWRKLAVNCVINPLTAIWNCPNGELRHHPQEIMQICEEVAAVIEREGHHTSAE 225 (291)
T ss_dssp GTTCTHHHHHHHTTSSCEEECTTHHHHHHHHHHHHHHHHHHHHHTTCCGGGGGGCHHHHHHHHHHHHHHHHHHTCCCCHH
T ss_pred cchHHHHHHHHHhcCCCCeecHHHHHHHHHHHeeeeeecHHHHHHCCCchHHHhHHHHHHHHHHHHHHHHHHcCCCCCHH
Confidence 67788999999999999999999999999999999988 677889999999999999986 4
Q ss_pred HH----HHHHHhcC-CCcccccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 018506 257 TL----TKILNSSS-ARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKL 331 (355)
Q Consensus 257 ~~----~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~ 331 (355)
.+ .+++..+. ..+.+. . |+..+...+. ..+.++++++++++|+++|+++.++++++..
T Consensus 226 ~~~~~~~~~~~~~~~~~ssm~------~----------d~~~g~~~e~-~~~~g~~~~~a~~~gv~~P~~~~~~~~~~~~ 288 (291)
T 1ks9_A 226 DLRDYVMQVIDATAENISSML------Q----------DIRALRHTEI-DYINGFLLRRARAHGIAVPENTRLFEMVKRK 288 (291)
T ss_dssp HHHHHHHHHHHHTTTCCCHHH------H----------HHHTTCCCSG-GGTHHHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCChHH------H----------HHHcCCccHH-HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 54 33333221 111110 1 1222222221 2467899999999999999999999999876
Q ss_pred HH
Q 018506 332 CE 333 (355)
Q Consensus 332 ~~ 333 (355)
++
T Consensus 289 e~ 290 (291)
T 1ks9_A 289 ES 290 (291)
T ss_dssp HH
T ss_pred hc
Confidence 54
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3.3e-23 Score=186.82 Aligned_cols=250 Identities=14% Similarity=0.143 Sum_probs=181.7
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC-CCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~-g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
.+|||+|||+|.||..++..|.+.|++|.+|||++++.+.+.+. |+..++++.++++++|+||+|+| +..+++++..+
T Consensus 2 ~~m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~Vi~~v~-~~~~~~v~~~l 80 (259)
T 2ahr_A 2 NAMKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK-PQLFETVLKPL 80 (259)
T ss_dssp -CCEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC-GGGHHHHHTTS
T ss_pred CccEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHcCCEeeCCHHHHHhcCCEEEEEeC-cHhHHHHHHHh
Confidence 45899999999999999999999999999999999999888764 78888899999999999999999 56888887653
Q ss_pred CccccCCCCCCCeEEEEcC-CCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecC--CHHH
Q 018506 123 NGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG--SEDA 199 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~s-t~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg--~~~~ 199 (355)
. +++++++.+ +..++ .+.+.++. +.+++. ++.+.+.....|...++.++ +++.
T Consensus 81 ~---------~~~~vv~~~~~~~~~---~l~~~~~~-----------~~~~v~-~~p~~~~~~~~g~~~i~~~~~~~~~~ 136 (259)
T 2ahr_A 81 H---------FKQPIISMAAGISLQ---RLATFVGQ-----------DLPLLR-IMPNMNAQILQSSTALTGNALVSQEL 136 (259)
T ss_dssp C---------CCSCEEECCTTCCHH---HHHHHHCT-----------TSCEEE-EECCGGGGGTCEEEEEEECTTCCHHH
T ss_pred c---------cCCEEEEeCCCCCHH---HHHHhcCC-----------CCCEEE-EcCCchHHHcCceEEEEcCCCCCHHH
Confidence 1 345888885 45554 34444421 123444 44455555666666666666 8899
Q ss_pred HHHHHHHHHHcCCCeEEeCCcchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcc-cccCCC
Q 018506 200 YQAAKPLFLSMGKNTIYCGGAGNGAAAKICN--NLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCW-SSDSYN 276 (355)
Q Consensus 200 ~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~--n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~-~~~~~~ 276 (355)
++.++++|+.+| .++++++.......++.. |.+...+...++|+ +.+.|++++++.+++..+...++ ......
T Consensus 137 ~~~~~~ll~~~G-~~~~~~~~~~d~~~al~g~~~~~~~~~~~~la~~---~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~ 212 (259)
T 2ahr_A 137 QARVRDLTDSFG-STFDISEKDFDTFTALAGSSPAYIYLFIEALAKA---GVKNGIPKAKALEIVTQTVLASASNLKTSS 212 (259)
T ss_dssp HHHHHHHHHTTE-EEEECCGGGHHHHHHHHTTHHHHHHHHHHHHHHH---HHHTTCCHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHhCC-CEEEecHHHccHHHHHhccHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999 588888866777777643 33333334444444 88999999999999988765554 222111
Q ss_pred CCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 018506 277 PVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCE 333 (355)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~ 333 (355)
..|.++. +..++|++++..+.||+ ++.|++..+.+++.+.++++.+
T Consensus 213 ~~p~~l~----~~~~~p~~~~~~~~~~l-------~~~g~~~~~~~a~~~~~~r~~~ 258 (259)
T 2ahr_A 213 QSPHDFI----DAICSPGGTTIAGLMEL-------ERLGLTATVSSAIDKTIDKAKS 258 (259)
T ss_dssp SCHHHHH----HHHCCTTSHHHHHHHHH-------HHHTHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHH----HhCCCCChhHHHHHHHH-------HHCChHHHHHHHHHHHHHHHhc
Confidence 1233321 23567888888777776 4789999999999999888765
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.4e-24 Score=196.47 Aligned_cols=190 Identities=15% Similarity=0.176 Sum_probs=145.6
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC-------CCCCCCCHHHHhhcCCEEEEeCCCchHHHH
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-------GVPTKETPFEVAEASDVVITMLPSSSHVLD 117 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~-------g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~ 117 (355)
.+||+|||+|.||..||.+|+ +||+|++|||++++++.+.+. ++..++++++ +++||+||.|+|++.+++.
T Consensus 12 ~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~aDlVieavpe~~~vk~ 89 (293)
T 1zej_A 12 HMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQIPEELLSKIEFTTTLEK-VKDCDIVMEAVFEDLNTKV 89 (293)
T ss_dssp CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHSCGGGGGGEEEESSCTT-GGGCSEEEECCCSCHHHHH
T ss_pred CCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHHHhCCeEEeCCHHH-HcCCCEEEEcCcCCHHHHH
Confidence 478999999999999999999 999999999999999888765 6666778876 7899999999999998888
Q ss_pred HhcCCCccccCCCCCCCeEE-EEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecC-
Q 018506 118 VYNGPNGLLQGGNSVRPQLL-IDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG- 195 (355)
Q Consensus 118 vl~~~~~~l~~~~~~~~~iv-i~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg- 195 (355)
++... +.. . ++.++ .|+||.++.......+... . +.+.||++ |+.+ +.+..++.+
T Consensus 90 ~l~~~---l~~--~-~~~IlasntSti~~~~~a~~~~~~~-----r----~~G~Hf~~-Pv~~-------~~lveiv~g~ 146 (293)
T 1zej_A 90 EVLRE---VER--L-TNAPLCSNTSVISVDDIAERLDSPS-----R----FLGVHWMN-PPHV-------MPLVEIVISR 146 (293)
T ss_dssp HHHHH---HHT--T-CCSCEEECCSSSCHHHHHTTSSCGG-----G----EEEEEECS-STTT-------CCEEEEEECT
T ss_pred HHHHH---Hhc--C-CCCEEEEECCCcCHHHHHHHhhccc-----c----eEeEEecC-cccc-------CCEEEEECCC
Confidence 76532 222 1 34566 5788888874433211110 1 12378888 5433 234444443
Q ss_pred --CHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcc
Q 018506 196 --SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCW 270 (355)
Q Consensus 196 --~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~ 270 (355)
++++++.++++++.+|++++++++. |++||++. ..++|++.++++ |++++++.+++..+.+.+|
T Consensus 147 ~t~~~~~~~~~~l~~~lGk~~v~v~d~------fi~Nrll~----~~~~EA~~l~~~-Gv~~e~id~~~~~g~g~~~ 212 (293)
T 1zej_A 147 FTDSKTVAFVEGFLRELGKEVVVCKGQ------SLVNRFNA----AVLSEASRMIEE-GVRAEDVDRVWKHHLGLLY 212 (293)
T ss_dssp TCCHHHHHHHHHHHHHTTCEEEEEESS------CHHHHHHH----HHHHHHHHHHHH-TCCHHHHHHHHHTTHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCeEEEeccc------ccHHHHHH----HHHHHHHHHHHh-CCCHHHHHHHHHhcCCCCC
Confidence 8999999999999999999999974 77777765 358999999999 8899999999987665444
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=7.7e-24 Score=191.34 Aligned_cols=250 Identities=13% Similarity=0.122 Sum_probs=175.3
Q ss_pred ceEEEEcccHHhHHHHHHHHHCC-CcEEEEeCChhHHHHHHhC-CCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCC
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPN 123 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G-~~V~v~dr~~~~~~~l~~~-g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~ 123 (355)
|||+|||+|.||..++..|.++| |+|++|||++++++.+.+. |+..+.++.+++ ++|+||+|+| +..+++++..+.
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~g~~~~~~~~~~~-~~D~vi~~v~-~~~~~~v~~~l~ 78 (263)
T 1yqg_A 1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELH-SDDVLILAVK-PQDMEAACKNIR 78 (263)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCCCC-TTSEEEECSC-HHHHHHHHTTCC
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHhcCCEEeCCHHHHh-cCCEEEEEeC-chhHHHHHHHhc
Confidence 68999999999999999999999 9999999999999988774 777777888888 9999999999 778999887643
Q ss_pred ccccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecC--CHHHH
Q 018506 124 GLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG--SEDAY 200 (355)
Q Consensus 124 ~~l~~~~~~~~~ivi~~-st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg--~~~~~ 200 (355)
+ . +++|+++ ++..+ +.+.+.++. +.+++.+ +.+.+.....|...++.++ +++.+
T Consensus 79 ~-------~-~~ivv~~~~g~~~---~~l~~~~~~-----------~~~~v~~-~~~~~~~~~~g~~~i~~~~~~~~~~~ 135 (263)
T 1yqg_A 79 T-------N-GALVLSVAAGLSV---GTLSRYLGG-----------TRRIVRV-MPNTPGKIGLGVSGMYAEAEVSETDR 135 (263)
T ss_dssp C-------T-TCEEEECCTTCCH---HHHHHHTTS-----------CCCEEEE-ECCGGGGGTCEEEEEECCTTSCHHHH
T ss_pred c-------C-CCEEEEecCCCCH---HHHHHHcCC-----------CCcEEEE-cCCHHHHHcCceEEEEcCCCCCHHHH
Confidence 2 1 4689998 44554 345554431 1345554 4455555566666677777 88999
Q ss_pred HHHHHHHHHcCCCeEEeC-CcchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcc-cccCCC
Q 018506 201 QAAKPLFLSMGKNTIYCG-GAGNGAAAKIC--NNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCW-SSDSYN 276 (355)
Q Consensus 201 ~~v~~ll~~~g~~~~~~g-~~g~a~~~Kl~--~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~-~~~~~~ 276 (355)
+.++++|+.+|..+ +++ +-......-+. .+......+..+.|+ +++.|++++++.+++..+...++ ......
T Consensus 136 ~~~~~l~~~~g~~~-~~~~~~~~~~~~al~g~~~~~~~~~~~~l~e~---~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (263)
T 1yqg_A 136 RIADRIMKSVGLTV-WLDDEEKMHGITGISGSGPAYVFYLLDALQNA---AIRQGFDMAEARALSLATFKGAVALAEQTG 211 (263)
T ss_dssp HHHHHHHHTTEEEE-ECSSTTHHHHHHHHTTSHHHHHHHHHHHHHHH---HHHTTCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCCEE-EeCChhhccHHHHHHccHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999866 777 51111111111 111123334444555 88999999999998876544333 211111
Q ss_pred CCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCC
Q 018506 277 PVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENG 335 (355)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g 335 (355)
..|..+ .+..+.|++++..+.+++ ++.|++.|+.+++.+.++++.+.|
T Consensus 212 ~~~~~~----~~~~~~~~~~~~~~l~~l-------~~~~~~~~~~~a~~~~~~~~~~~~ 259 (263)
T 1yqg_A 212 EDFEKL----QKNVTSKGGTTHEAVEAF-------RRHRVAEAISEGVCACVRRSQEME 259 (263)
T ss_dssp CCHHHH----HHHTCCTTSHHHHHHHHH-------HHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHH----HHhcCCCChhHHHHHHHH-------HHCCHHHHHHHHHHHHHHHHHHHH
Confidence 112111 234677888777666555 779999999999999999998875
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.9e-24 Score=192.24 Aligned_cols=188 Identities=15% Similarity=0.207 Sum_probs=139.8
Q ss_pred CCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhH--------------HHHHHh-CCCCCCCCHHHHhhcCCEEE
Q 018506 42 SCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNV--------------MKMFSD-MGVPTKETPFEVAEASDVVI 106 (355)
Q Consensus 42 ~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~--------------~~~l~~-~g~~~~~s~~e~~~~aDiVi 106 (355)
....|||+|||+|+||.+||.+|+++||+|++|||++++ .+.+.+ .+...+.++.++++++|+||
T Consensus 16 ~~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aDvVi 95 (245)
T 3dtt_A 16 YFQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVHLAAFADVAAGAELVV 95 (245)
T ss_dssp ---CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGGSTTCEEEEHHHHHHHCSEEE
T ss_pred ccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCceeccCHHHHHhcCCEEE
Confidence 456799999999999999999999999999999999997 555554 35566778999999999999
Q ss_pred EeCCCchHHHHHhcCC-CccccCCCCCCCeEEEEcCC-----------CCHHHHHHHHHHHhhchhhhccCCCCCceEEe
Q 018506 107 TMLPSSSHVLDVYNGP-NGLLQGGNSVRPQLLIDSST-----------IDPQTSRNISAAVSNCILKEKKDSWENPVMLD 174 (355)
Q Consensus 107 ~~v~~~~~~~~vl~~~-~~~l~~~~~~~~~ivi~~st-----------~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~ 174 (355)
+|+|.. .+.+++..+ .+.+ ++++|||+++ ..|.+...+.+.+.+. +.... ...++.+++
T Consensus 96 lavp~~-~~~~~~~~i~~~~l------~g~ivi~~s~~~~~~~G~~~t~~~~~~~~~~~~l~~~-l~~~~-vv~~~~~~~ 166 (245)
T 3dtt_A 96 NATEGA-SSIAALTAAGAENL------AGKILVDIANPLDFSHGMPPTLNPVNTDSLGEQIQRT-FPEAK-VVKTLNTMN 166 (245)
T ss_dssp ECSCGG-GHHHHHHHHCHHHH------TTSEEEECCCCEECTTCSSCEESSCSSCCHHHHHHHH-STTSE-EEECSTTSC
T ss_pred EccCcH-HHHHHHHHhhhhhc------CCCEEEECCCCCCCcCCccccccCCCCccHHHHHHHH-CCCCe-EEEeecccC
Confidence 999976 445555543 2222 4579999993 3443333333333221 00000 001367888
Q ss_pred CCCCCChHHHhcCceEEEecC-CHHHHHHHHHHHHHcCCC-eEEeCCcchHHHHHHHHHHHHHHHH
Q 018506 175 APVSGGVLAAEAGTLTFMVGG-SEDAYQAAKPLFLSMGKN-TIYCGGAGNGAAAKICNNLTMAVSM 238 (355)
Q Consensus 175 ~pv~g~~~~~~~g~~~~~~gg-~~~~~~~v~~ll~~~g~~-~~~~g~~g~a~~~Kl~~n~~~~~~~ 238 (355)
+|+++++..+..+++.++++| |+++++.++++|+.+|.+ ++++|++|.+..+|+++|++..++.
T Consensus 167 a~v~~~~~~a~~g~~~~~v~g~d~~~~~~v~~ll~~~g~~~~~~~G~~g~a~~~k~~~~~~~~l~~ 232 (245)
T 3dtt_A 167 ASLMVDPGRAAGGDHSVFVSGNDAAAKAEVATLLKSLGHQDVIDLGDITTARGAEMLLPVWIRLWG 232 (245)
T ss_dssp HHHHHCGGGTGGGCCCEEEECSCHHHHHHHHHHHHHTTCCCEEEEESGGGHHHHHTTHHHHHHHHH
T ss_pred HHHhcCccccCCCCeeEEEECCCHHHHHHHHHHHHHcCCCceeccCcHHHHHHhhhhHHHHHHHHH
Confidence 999988887777887777755 689999999999999974 6899999999999999999887763
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.3e-23 Score=195.40 Aligned_cols=281 Identities=12% Similarity=0.073 Sum_probs=189.3
Q ss_pred CceEEEEcccHHhHHHHHHHHHCC-------CcEEEEeCChh-----HHHHHHhC--------------CCCCCCCHHHH
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAG-------YKMAVHDVNCN-----VMKMFSDM--------------GVPTKETPFEV 98 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G-------~~V~v~dr~~~-----~~~~l~~~--------------g~~~~~s~~e~ 98 (355)
+|||+|||+|+||++||..|+++| |+|++|+|+++ +++.+++. ++..++++.++
T Consensus 21 ~~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ea 100 (375)
T 1yj8_A 21 PLKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLASV 100 (375)
T ss_dssp CBCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHHH
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHHH
Confidence 579999999999999999999999 99999999998 88887652 23445678888
Q ss_pred hhcCCEEEEeCCCchHHHHHhcCCCc----cccCCCCCCCeEEEEcCCCC-H--HHHHHHHHHHhhchhhhccCCCCCce
Q 018506 99 AEASDVVITMLPSSSHVLDVYNGPNG----LLQGGNSVRPQLLIDSSTID-P--QTSRNISAAVSNCILKEKKDSWENPV 171 (355)
Q Consensus 99 ~~~aDiVi~~v~~~~~~~~vl~~~~~----~l~~~~~~~~~ivi~~st~~-~--~~~~~l~~~~~~~~~~~~~g~~~~~~ 171 (355)
++++|+||+|||+ +++++++..+.+ .+. +++++|+++++. + ...+.+.+.+.+. .+ ....
T Consensus 101 ~~~aDvVilav~~-~~~~~vl~~i~~~~~~~l~-----~~~ivvs~~~Gi~~~~~~~~~l~~~l~~~-----~~--~~~~ 167 (375)
T 1yj8_A 101 INDADLLIFIVPC-QYLESVLASIKESESIKIA-----SHAKAISLTKGFIVKKNQMKLCSNYISDF-----LN--IPCS 167 (375)
T ss_dssp HTTCSEEEECCCH-HHHHHHHHHHTC---CCCC-----TTCEEEECCCSCEEETTEEECHHHHHHHH-----SS--SCEE
T ss_pred HcCCCEEEEcCCH-HHHHHHHHHHhhhhhccCC-----CCCEEEEeCCccccCCccccCHHHHHHHH-----cC--CCEE
Confidence 8999999999995 689999876655 442 457889988653 4 1223344444321 11 1134
Q ss_pred EEeCCCCCChHHHhcCceEEEecCCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHH-----------------HHHHH
Q 018506 172 MLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKIC-----------------NNLTM 234 (355)
Q Consensus 172 ~~~~pv~g~~~~~~~g~~~~~~gg~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~-----------------~n~~~ 234 (355)
+...|..............++.+++++..+.++++|+..+.++++.+++....|.|++ +|...
T Consensus 168 v~~gp~~a~~v~~g~~~~~~~~~~~~~~~~~v~~ll~~~g~~~~~~~di~~~~~~k~l~N~~~~~~g~~~~~~~~~n~~~ 247 (375)
T 1yj8_A 168 ALSGANIAMDVAMENFSEATIGGNDKDSLVIWQRVFDLPYFKINCVNETIEVEICGALKNIITLACGFCDGLNLPTNSKS 247 (375)
T ss_dssp EEECSCCHHHHHTTCCEEEEEECSCHHHHHHHHHHHCBTTEEEEEESCSHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred EEeCCchHHHHHhCCCeEEEEecCCHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHHHHHHHHHHHHHHHhhccCChhHHH
Confidence 5666654322222233345556678899999999999999888888886555565554 55567
Q ss_pred HHHHHHHHHHHHHHHHc--CCCHHHHHHH------HHhcCCCcccccCCCCCCCccc-CCCCCCCCCC------Ccchhh
Q 018506 235 AVSMLGVSEALTLGQSL--GISASTLTKI------LNSSSARCWSSDSYNPVPGVME-GVPASRNYGG------GFASKL 299 (355)
Q Consensus 235 ~~~~~~~~Ea~~la~~~--Gi~~~~~~~~------~~~~~~~s~~~~~~~~~~~~~~-~~~~~~~~~~------~~~~~~ 299 (355)
..+..++.|+..++++. |++++++.++ +..... + ..+.....+.. +. ...+.. .+....
T Consensus 248 a~~~~~~~E~~~la~a~G~G~~~~~~~~~~g~~dl~~t~~~-~---~~~~~~~~~~~~g~--~~~~~d~~~~~~~g~~~E 321 (375)
T 1yj8_A 248 AIIRNGINEMILFGKVFFQKFNENILLESCGFADIITSFLA-G---RNAKCSAEFIKSTP--KKTWEELENEILKGQKLQ 321 (375)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCGGGGGSTTTHHHHHHHHSS-S---SHHHHHHHHHHHTT--SSCHHHHHHHHHTTCCCH
T ss_pred HHHHHHHHHHHHHHHHhccCCCcchhhccccccceeEeeeC-C---ccHHHHHHHHhcCC--CCCHHHHHHhhcCCcEee
Confidence 77889999999999999 6998776432 222111 0 00000000000 00 000100 033456
Q ss_pred HHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHHHCCCCCCcHHHHHHHHhcC
Q 018506 300 MAKDLNLALASAKEVGV--DCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGG 351 (355)
Q Consensus 300 ~~kd~~~~~~~a~~~gv--~~pi~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~~ 351 (355)
..+|++.++++++++|+ ++|+++.++++++ ++.+...+++.+..+
T Consensus 322 ~~~~~~~v~~~a~~~gv~~~~P~~~~v~~~~~-------~~~~~~~~~~~l~~~ 368 (375)
T 1yj8_A 322 GTVTLKYVYHMIKEKNMTNEFPLFTVLHKISF-------ENEDPSSLLKTFMNN 368 (375)
T ss_dssp HHHHHHHHHHHHHHTTCGGGCHHHHHHHHHHH-------SCCCTTHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHh-------CCCCHHHHHHHHHcC
Confidence 78999999999999999 9999999999886 344555666655544
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.7e-23 Score=192.43 Aligned_cols=263 Identities=17% Similarity=0.175 Sum_probs=174.8
Q ss_pred CCCCceEEEEcccHHhHHHHHHHHHCC----CcEEEEeCChh--HHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHH
Q 018506 42 SCQFESVGFIGLGNMGFRMASNLMKAG----YKMAVHDVNCN--VMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 115 (355)
Q Consensus 42 ~~~~mkIgiIG~G~mG~~ia~~L~~~G----~~V~v~dr~~~--~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~ 115 (355)
.+.+|||+|||+|+||.+|+.+|.++| |+|++|||+++ +++.+.+.|+..++++.++++++|+||+||| ++++
T Consensus 19 ~~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G~~~~~~~~e~~~~aDvVilav~-~~~~ 97 (322)
T 2izz_A 19 YFQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVK-PHII 97 (322)
T ss_dssp ---CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHTCEEESCHHHHHHHCSEEEECSC-GGGH
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcCCEEeCChHHHhccCCEEEEEeC-HHHH
Confidence 355689999999999999999999999 89999999986 8888887788888889999999999999999 5789
Q ss_pred HHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEe-CCCCCChHHHhcCceEEEec
Q 018506 116 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGVLAAEAGTLTFMVG 194 (355)
Q Consensus 116 ~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~-~pv~g~~~~~~~g~~~~~~g 194 (355)
++++..+.+.+. ++++||+++++.+. ..+.+.+.+. .+ ...++. .|. .+.....+. +++++
T Consensus 98 ~~vl~~l~~~l~-----~~~ivvs~s~gi~~--~~l~~~l~~~-----~~---~~~vv~~~p~--~p~~~~~g~-~v~~~ 159 (322)
T 2izz_A 98 PFILDEIGADIE-----DRHIVVSCAAGVTI--SSIEKKLSAF-----RP---APRVIRCMTN--TPVVVREGA-TVYAT 159 (322)
T ss_dssp HHHHHHHGGGCC-----TTCEEEECCTTCCH--HHHHHHHHTT-----SS---CCEEEEEECC--GGGGGTCEE-EEEEE
T ss_pred HHHHHHHHhhcC-----CCCEEEEeCCCCCH--HHHHHHHhhc-----CC---CCeEEEEeCC--cHHHHcCCe-EEEEe
Confidence 998876544442 45799999876543 3455555421 00 122222 221 222223343 66666
Q ss_pred CC---HHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHcCCCHHHHHHHHHhcCCC
Q 018506 195 GS---EDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICN--NLTMAVSMLGVSEALTL-GQSLGISASTLTKILNSSSAR 268 (355)
Q Consensus 195 g~---~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~--n~~~~~~~~~~~Ea~~l-a~~~Gi~~~~~~~~~~~~~~~ 268 (355)
++ ++.++.++++|+.+|..+++ .+........+.. |.+.+. +.|++.. +.+.|++++.+.+++..+...
T Consensus 160 g~~~~~~~~~~v~~ll~~~G~~~~~-~e~~~~~~~a~~g~gpa~~~~----~~eala~a~~~~Gl~~~~a~~l~~~~~~g 234 (322)
T 2izz_A 160 GTHAQVEDGRLMEQLLSSVGFCTEV-EEDLIDAVTGLSGSGPAYAFT----ALDALADGGVKMGLPRRLAVRLGAQALLG 234 (322)
T ss_dssp CTTCCHHHHHHHHHHHHTTEEEEEC-CGGGHHHHHHHTTTHHHHHHH----HHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhCCCEEEe-CHHHHHHHHHHhcCHHHHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 66 78999999999999986544 3322233333321 222223 4455544 789999999999999876544
Q ss_pred ccccc-CCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCC
Q 018506 269 CWSSD-SYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSK 339 (355)
Q Consensus 269 s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g~g~~ 339 (355)
++... .....|..+. +..++|++++. ..++.+++.|++.++.+++.+.++++.+.|.++.
T Consensus 235 ~~~~~~~~~~~p~~l~----~~v~sp~g~t~-------~~l~~l~~~g~~~~~~~av~~~~~ra~e~~~~~~ 295 (322)
T 2izz_A 235 AAKMLLHSEQHPGQLK----DNVSSPGGATI-------HALHVLESGGFRSLLINAVEASCIRTRELQSMAD 295 (322)
T ss_dssp HHHHHHHCSSCHHHHH----HHHCCTTSHHH-------HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHhcCCCHHHHH----HhCCCCCcHHH-------HHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhccc
Confidence 33111 0011122221 12234554433 4566788899999999999999999998876543
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-22 Score=191.62 Aligned_cols=282 Identities=12% Similarity=0.073 Sum_probs=187.4
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCC-------CcEEEEeCChh-----HHHHHHhCC--------------CCCCCCHH
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAG-------YKMAVHDVNCN-----VMKMFSDMG--------------VPTKETPF 96 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G-------~~V~v~dr~~~-----~~~~l~~~g--------------~~~~~s~~ 96 (355)
|.+|||+|||+|+||+++|..|+++| |+|++|+|+++ +.+.+.+.+ +..++++.
T Consensus 6 m~~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (354)
T 1x0v_A 6 MASKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVV 85 (354)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHH
T ss_pred cCCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHH
Confidence 45689999999999999999999999 99999999998 888776421 23346788
Q ss_pred HHhhcCCEEEEeCCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCH---HHHHHHHHHHhhchhhhccCCCCCceEE
Q 018506 97 EVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDP---QTSRNISAAVSNCILKEKKDSWENPVML 173 (355)
Q Consensus 97 e~~~~aDiVi~~v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~---~~~~~l~~~~~~~~~~~~~g~~~~~~~~ 173 (355)
++++++|+||+|+|. ..+++++..+.+.+. ++++|++++++.. ...+.+.+.+.+. + + ....+.
T Consensus 86 ~~~~~aD~Vilav~~-~~~~~v~~~i~~~l~-----~~~ivv~~~~Gi~~~~~~~~~l~~~l~~~-~----~--~~~~v~ 152 (354)
T 1x0v_A 86 QAAEDADILIFVVPH-QFIGKICDQLKGHLK-----ANATGISLIKGVDEGPNGLKLISEVIGER-L----G--IPMSVL 152 (354)
T ss_dssp HHHTTCSEEEECCCG-GGHHHHHHHHTTCSC-----TTCEEEECCCCBCSSSSSCCBHHHHHHHH-H----T--CCEEEE
T ss_pred HHHcCCCEEEEeCCH-HHHHHHHHHHHhhCC-----CCCEEEEECCccCCCCCccccHHHHHHHH-c----C--CCEEEE
Confidence 888999999999996 588888876655543 4578899887542 2223333333321 0 1 013455
Q ss_pred eCCCCCChHHHhcC--ceEEEecCCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHH-----------------HHHHH
Q 018506 174 DAPVSGGVLAAEAG--TLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKIC-----------------NNLTM 234 (355)
Q Consensus 174 ~~pv~g~~~~~~~g--~~~~~~gg~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~-----------------~n~~~ 234 (355)
..|.+. .....+ ...++.+++++..+.++++|+..+.++++.+++....|.|++ +|...
T Consensus 153 ~gp~~a--~~v~~g~~~~~~~~~~~~~~~~~v~~ll~~~g~~~~~~~di~~~~~~k~~~N~~~~~~g~~~~~~~~~n~~~ 230 (354)
T 1x0v_A 153 MGANIA--SEVADEKFCETTIGCKDPAQGQLLKELMQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKA 230 (354)
T ss_dssp ECSCCH--HHHHTTCCEEEEEECSSHHHHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred ECCCcH--HHHHhcCCceEEEEECCHHHHHHHHHHhCCCCEEEEEcCCchHhHHHHHHHHHHHHHHHHHHHccCCccHHH
Confidence 566532 222334 334555678889999999999999888888887666777666 56666
Q ss_pred HHHHHHHHHHHHHHHHcCC---CHHHHHH------HHHhcCCCcccccCCCCCCCccc-CCCCCCCCC---CCcchhhHH
Q 018506 235 AVSMLGVSEALTLGQSLGI---SASTLTK------ILNSSSARCWSSDSYNPVPGVME-GVPASRNYG---GGFASKLMA 301 (355)
Q Consensus 235 ~~~~~~~~Ea~~la~~~Gi---~~~~~~~------~~~~~~~~s~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~ 301 (355)
.....++.|+..++++.|+ +++++.+ ++..... +.. +...+.+.. ++. ..+.. ..+......
T Consensus 231 ~~~~~~~~E~~~la~a~G~~~~~~~~~~~~~g~~d~~~~~~~-~~~---~~~~~~~~~~~~~-~~~~~~~~~~g~~~E~~ 305 (354)
T 1x0v_A 231 AVIRLGLMEMIAFAKLFCSGPVSSATFLESCGVADLITTCYG-GRN---RKVAEAFARTGKS-IEQLEKELLNGQKLQGP 305 (354)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCCCGGGGGSTTTHHHHHHHHHH-CHH---HHHHHHHHHHCCC-HHHHHHHHSTTCCCHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcccccccchHHHHHHhhcc-ccc---HHHHHHHHhcCCC-HHHHHHhhcCCcEeehH
Confidence 7788999999999999999 8876532 2221110 000 000000000 000 00000 012345678
Q ss_pred HHHHHHHHHHHHhCC--CChHHHHHHHHHHHHHHCCCCCCcHHHHHHHHhcC
Q 018506 302 KDLNLALASAKEVGV--DCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGG 351 (355)
Q Consensus 302 kd~~~~~~~a~~~gv--~~pi~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~~ 351 (355)
+|++.++++++++|+ ++|+++.++++++. +.+...+++.+..+
T Consensus 306 ~~~g~v~~~a~~~gv~~~~P~~~~v~~~~~~-------~~~~~~~~~~l~~~ 350 (354)
T 1x0v_A 306 ETARELYSILQHKGLVDKFPLFMAVYKVCYE-------GQPVGEFIHCLQNH 350 (354)
T ss_dssp HHHHHHHHHHHHHTCGGGSHHHHHHHHHHHS-------CCCGGGTHHHHHTC
T ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHHhC-------CCCHHHHHHHHHcC
Confidence 999999999999999 99999999998862 22445555555443
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-21 Score=178.70 Aligned_cols=201 Identities=14% Similarity=0.174 Sum_probs=157.8
Q ss_pred CceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCC
Q 018506 45 FESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPN 123 (355)
Q Consensus 45 ~mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~ 123 (355)
||||+|||+ |+||..++..|.++||+|++|||++++++.+.+.|+... ++.++++++|+||+|+|.. .+++++..+.
T Consensus 11 mm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~-~~~~~~~~aDvVi~av~~~-~~~~v~~~l~ 88 (286)
T 3c24_A 11 PKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLT-DGDGWIDEADVVVLALPDN-IIEKVAEDIV 88 (286)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHHTTCCCC-CSSGGGGTCSEEEECSCHH-HHHHHHHHHG
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHhcCCCcC-CHHHHhcCCCEEEEcCCch-HHHHHHHHHH
Confidence 579999999 999999999999999999999999999998887776554 6778889999999999975 6888887654
Q ss_pred ccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEE-eCCCCCCh------HHHhcCc-------e
Q 018506 124 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML-DAPVSGGV------LAAEAGT-------L 189 (355)
Q Consensus 124 ~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~-~~pv~g~~------~~~~~g~-------~ 189 (355)
+.+. ++++|+++|+..+. ..+.+ + . .+..|+ .+|++++. .....+. .
T Consensus 89 ~~l~-----~~~ivv~~s~~~~~--~~l~~-~-------~----~~~~~v~~~P~~~~~~~~~~~~~~~~g~l~~~~~~~ 149 (286)
T 3c24_A 89 PRVR-----PGTIVLILDAAAPY--AGVMP-E-------R----ADITYFIGHPCHPPLFNDETDPAARTDYHGGIAKQA 149 (286)
T ss_dssp GGSC-----TTCEEEESCSHHHH--HTCSC-C-------C----TTSEEEEEEECCSCSSCCCCSHHHHTCSSSSSSCEE
T ss_pred HhCC-----CCCEEEECCCCchh--HHHHh-h-------h----CCCeEEecCCCCccccccccchhhccCcccccccce
Confidence 4432 46799998776543 22211 1 0 125677 88888776 5566663 2
Q ss_pred E--EEecCCHHHHHHHHHHHHHcCC---CeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCHHHHHHHHH
Q 018506 190 T--FMVGGSEDAYQAAKPLFLSMGK---NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTL-GQSLGISASTLTKILN 263 (355)
Q Consensus 190 ~--~~~gg~~~~~~~v~~ll~~~g~---~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l-a~~~Gi~~~~~~~~~~ 263 (355)
. +..+++++.++.++++|+.+|. +++++++.+.+.+.|.+.|.....++..+.|++.. +.+.|++++++.+++.
T Consensus 150 ~i~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~v~~~~~~~~~~a~~n~~~~~~~~~~~eal~~~~~~~Gl~~~~~~~~~~ 229 (286)
T 3c24_A 150 IVCALMQGPEEHYAIGADICETMWSPVTRTHRVTTEQLAILEPGLSEMVAMPFVETMVHAVDECADRYGIDRQAALDFMI 229 (286)
T ss_dssp EEEEEEESCTHHHHHHHHHHHHHTCSEEEEEECCHHHHHHHTTHHHHTTHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred eeeeccCCCHHHHHHHHHHHHHhcCCcceEEEeChhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 2 3346788999999999999998 78999887777777999998777888889998877 5556999999999988
Q ss_pred hcC
Q 018506 264 SSS 266 (355)
Q Consensus 264 ~~~ 266 (355)
.+.
T Consensus 230 ~~~ 232 (286)
T 3c24_A 230 GHL 232 (286)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=99.86 E-value=7.3e-21 Score=177.92 Aligned_cols=261 Identities=15% Similarity=0.168 Sum_probs=172.3
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCC-------------CCCCHHHHhhcCCEEEEeCC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-------------TKETPFEVAEASDVVITMLP 110 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~-------------~~~s~~e~~~~aDiVi~~v~ 110 (355)
++|||+|||+|.||+++|..|+++|++|++|+|+ ++.+.+++.|.. .++++++ ++.+|+||+|+|
T Consensus 2 ~~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~Vilavk 79 (335)
T 3ghy_A 2 SLTRICIVGAGAVGGYLGARLALAGEAINVLARG-ATLQALQTAGLRLTEDGATHTLPVRATHDAAA-LGEQDVVIVAVK 79 (335)
T ss_dssp CCCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH-HHHHHHHHTCEEEEETTEEEEECCEEESCHHH-HCCCSEEEECCC
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh-HHHHHHHHCCCEEecCCCeEEEeeeEECCHHH-cCCCCEEEEeCC
Confidence 4689999999999999999999999999999995 677888776643 2356665 579999999999
Q ss_pred CchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCH------------------HHHHHHHHHHhhchhhhccCCCCCceE
Q 018506 111 SSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDP------------------QTSRNISAAVSNCILKEKKDSWENPVM 172 (355)
Q Consensus 111 ~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~------------------~~~~~l~~~~~~~~~~~~~g~~~~~~~ 172 (355)
. .++++++..+.+.+. ++++|+.++++.+ ...+.+.+.++...+. .+.......
T Consensus 80 ~-~~~~~~~~~l~~~l~-----~~~~iv~~~nGi~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~v~--~gv~~~~a~ 151 (335)
T 3ghy_A 80 A-PALESVAAGIAPLIG-----PGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIAQAIPTRHVL--GCVVHLTCA 151 (335)
T ss_dssp H-HHHHHHHGGGSSSCC-----TTCEEEECCSSSCTTTTCSSSTTTTCCCTTTCTTSHHHHHSCGGGEE--EEEECCCEE
T ss_pred c-hhHHHHHHHHHhhCC-----CCCEEEEECCCCccccccccccccccccccCCcHHHHHHhcCcccEE--EEEEEEEEE
Confidence 7 588999988766653 4568888877732 1223455555432110 000000011
Q ss_pred EeCCCCCChHHHhcCceEEEec----CCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHH---------------
Q 018506 173 LDAPVSGGVLAAEAGTLTFMVG----GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLT--------------- 233 (355)
Q Consensus 173 ~~~pv~g~~~~~~~g~~~~~~g----g~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~--------------- 233 (355)
...|-. ......+ .+.+| .+.+..+.+.++|+..+.+++...++-...|.|++.|..
T Consensus 152 ~~~pg~--v~~~~~g--~~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~na~~N~l~al~~~~~g~~ 227 (335)
T 3ghy_A 152 TVSPGH--IRHGNGR--RLILGEPAGGASPRLASIAALFGRAGLQAECSEAIQRDIWFKLWGNMTMNPVSVLTGATCDRI 227 (335)
T ss_dssp ESSTTE--EEECSCC--EEEEECTTCSCCHHHHHHHHHHHHTTCEEEECSCHHHHHHHHHHTTTTHHHHHHHHCCCHHHH
T ss_pred EcCCcE--EEECCCC--eEEEecCCCCcCHHHHHHHHHHHhCCCCcEeCchHHHHHHHHHHHHhhhhHHHHHhCCChHHH
Confidence 222211 1111112 23343 345678899999999998888888888999999876643
Q ss_pred ------HHHHHHHHHHHHHHHHHcCCCH----HHHHHHHHhcCCCcccccCCCCCCCcccCC-CCCCCCCCCcchhhHHH
Q 018506 234 ------MAVSMLGVSEALTLGQSLGISA----STLTKILNSSSARCWSSDSYNPVPGVMEGV-PASRNYGGGFASKLMAK 302 (355)
Q Consensus 234 ------~~~~~~~~~Ea~~la~~~Gi~~----~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~k 302 (355)
...+..++.|+..++++.|+++ +...+....... ...++..++..|+ +.+-++.
T Consensus 228 ~~~~~~~~l~~~~~~E~~~va~a~G~~~~~~~~~~~~~~~~~~~-----~~sSM~qD~~~gr~~tEid~i---------- 292 (335)
T 3ghy_A 228 LDDPLVSAFCLAVMAEAKAIGARIGCPIEQSGEARSAVTRQLGA-----FKTSMLQDAEAGRGPLEIDAL---------- 292 (335)
T ss_dssp HHSHHHHHHHHHHHHHHHHHHHTTTCCCCSCHHHHHHHHHTTCS-----CCCTTTC-----CCCCCHHHH----------
T ss_pred hcChHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHhccCC-----CCcHHHHHHHcCCCCchHHHH----------
Confidence 2346778899999999999753 344444433211 1112234444444 4443333
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHC
Q 018506 303 DLNLALASAKEVGVDCPLTSQAQDIYAKLCEN 334 (355)
Q Consensus 303 d~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~ 334 (355)
.+++++.++++|+++|+++.++++++..++.
T Consensus 293 -~G~vv~~a~~~gv~~P~~~~l~~li~~~e~~ 323 (335)
T 3ghy_A 293 -VASVREIGLHVGVPTPQIDTLLGLVRLHAQT 323 (335)
T ss_dssp -THHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Confidence 4589999999999999999999999887664
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.86 E-value=7.2e-22 Score=178.74 Aligned_cols=202 Identities=13% Similarity=0.129 Sum_probs=152.0
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCc-EEEEeCChhHHHHHHhC-CCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYK-MAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~-V~v~dr~~~~~~~l~~~-g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
+|||+|||+|.||..++..|.+.|++ |.+|||++++++.+.+. ++....++.++++++|+||+|+|++ .+++++..+
T Consensus 10 ~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~av~~~-~~~~v~~~l 88 (266)
T 3d1l_A 10 DTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKLYIVSLKDS-AFAELLQGI 88 (266)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEESCGGGSCSCCSEEEECCCHH-HHHHHHHHH
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCceeCCHHHHhcCCCEEEEecCHH-HHHHHHHHH
Confidence 58999999999999999999999999 89999999999888764 7777788888888999999999976 667877654
Q ss_pred CccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecCCHHHHHH
Q 018506 123 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQA 202 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg~~~~~~~ 202 (355)
.+.+ .+++++++++++.+.+. +.+.+.. . +..++..|+++.+.....+...++.+++++.++.
T Consensus 89 ~~~~-----~~~~ivv~~s~~~~~~~--l~~~~~~------~----~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~ 151 (266)
T 3d1l_A 89 VEGK-----REEALMVHTAGSIPMNV--WEGHVPH------Y----GVFYPMQTFSKQREVDFKEIPFFIEASSTEDAAF 151 (266)
T ss_dssp HTTC-----CTTCEEEECCTTSCGGG--STTTCSS------E----EEEEECCCC---CCCCCTTCCEEEEESSHHHHHH
T ss_pred Hhhc-----CCCcEEEECCCCCchHH--HHHHHHh------c----cCcCCceecCCCchhhcCCCeEEEecCCHHHHHH
Confidence 3333 25679999999887532 3322211 1 1356677776643322233333444789999999
Q ss_pred HHHHHHHcCCCeEEeCCcc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCC
Q 018506 203 AKPLFLSMGKNTIYCGGAG---NGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSAR 268 (355)
Q Consensus 203 v~~ll~~~g~~~~~~g~~g---~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~ 268 (355)
++++|+.+|.+++++++.+ ...+.|+++|.... +..++|+ ++++.|++++++.+++..+...
T Consensus 152 ~~~l~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ea--l~~~~Gl~~~~~~~l~~~~~~~ 216 (266)
T 3d1l_A 152 LKAIASTLSNRVYDADSEQRKSLHLAAVFTCNFTNH--MYALAAE--LLKKYNLPFDVMLPLIDETARK 216 (266)
T ss_dssp HHHHHHTTCSCEEECCHHHHHHHHHHHHHHHHHHHH--HHHHHHH--HHHHTTCCGGGGHHHHHHHHHH
T ss_pred HHHHHHhcCCcEEEeCHHHHHHHHHHHHHHHHHHHH--HHHHHHH--HHHHcCCCHHHHHHHHHHHHHH
Confidence 9999999999999999754 56889999998533 3446676 5789999999999998876543
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.7e-21 Score=176.24 Aligned_cols=255 Identities=16% Similarity=0.173 Sum_probs=170.0
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC---cEEEEeCChhHHHHHHhC-CCCCCCCHHHHhhcCCEEEEeCCCchHHHHHh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY---KMAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHVLDVY 119 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~---~V~v~dr~~~~~~~l~~~-g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl 119 (355)
++|||+|||+|+||.+|+..|.++|+ +|++|||++++++.+.+. |+..+.++.++++++|+||+|+|. +.+++++
T Consensus 2 ~~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi~~~~~~~~~~~~aDvVilav~p-~~~~~vl 80 (280)
T 3tri_A 2 NTSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNADVVVLAVKP-HQIKMVC 80 (280)
T ss_dssp CCSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCCEEESCHHHHHSSCSEEEECSCG-GGHHHHH
T ss_pred CCCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCCEEeCChHHHHhcCCeEEEEeCH-HHHHHHH
Confidence 46899999999999999999999999 999999999999999875 888888999999999999999984 6889988
Q ss_pred cCCCcc-ccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEec---C
Q 018506 120 NGPNGL-LQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVG---G 195 (355)
Q Consensus 120 ~~~~~~-l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~g---g 195 (355)
.++.+. +. ++++||+.+++.+. ..+.+.++.. .... ..+++.|. ....+. +.++. .
T Consensus 81 ~~l~~~~l~-----~~~iiiS~~agi~~--~~l~~~l~~~---~~vv----r~mPn~p~-----~v~~g~-~~l~~~~~~ 140 (280)
T 3tri_A 81 EELKDILSE-----TKILVISLAVGVTT--PLIEKWLGKA---SRIV----RAMPNTPS-----SVRAGA-TGLFANETV 140 (280)
T ss_dssp HHHHHHHHT-----TTCEEEECCTTCCH--HHHHHHHTCC---SSEE----EEECCGGG-----GGTCEE-EEEECCTTS
T ss_pred HHHHhhccC-----CCeEEEEecCCCCH--HHHHHHcCCC---CeEE----EEecCChH-----HhcCcc-EEEEeCCCC
Confidence 876655 43 34477766555442 4566665420 0000 11222232 222233 43443 3
Q ss_pred CHHHHHHHHHHHHHcCCCeEEeCC-cchHHHHHHH--HHHHHHHHHHHHHHHHHH-HHHcCCCHHHHHHHHHhcCCCccc
Q 018506 196 SEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKIC--NNLTMAVSMLGVSEALTL-GQSLGISASTLTKILNSSSARCWS 271 (355)
Q Consensus 196 ~~~~~~~v~~ll~~~g~~~~~~g~-~g~a~~~Kl~--~n~~~~~~~~~~~Ea~~l-a~~~Gi~~~~~~~~~~~~~~~s~~ 271 (355)
+++.++.++++|+.+|+ ++++.+ .......-+. .+.+.+ .+.|++.- +.+.|+++++..+++.++...+..
T Consensus 141 ~~~~~~~v~~l~~~iG~-~~~v~~E~~~d~~talsgsgpa~~~----~~~eal~~a~v~~Gl~~~~a~~l~~~t~~G~a~ 215 (280)
T 3tri_A 141 DKDQKNLAESIMRAVGL-VIWVSSEDQIEKIAALSGSGPAYIF----LIMEALQEAAEQLGLTKETAELLTEQTVLGAAR 215 (280)
T ss_dssp CHHHHHHHHHHHGGGEE-EEECSSHHHHHHHHHHTTSHHHHHH----HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCC-eEEECCHHHhhHHHHHhccHHHHHH----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 68899999999999997 455533 1111111111 112222 34455544 789999999999998876533221
Q ss_pred c-cCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCC
Q 018506 272 S-DSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENG 335 (355)
Q Consensus 272 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g 335 (355)
. ......|..+. +...+||.+.. ..++..++.|++..+.+++.+.++++.+.|
T Consensus 216 ~~~~~~~~p~~l~----~~v~spgGtT~-------~~l~~le~~g~~~~~~~av~aa~~r~~el~ 269 (280)
T 3tri_A 216 MALETEQSVVQLR----QFVTSPGGTTE-------QAIKVLESGNLRELFIKALTAAVNRAKELS 269 (280)
T ss_dssp HHHTCSSCHHHHH----HHHCCTTSHHH-------HHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHH----HhccCCChHHH-------HHHHHHHHCChHHHHHHHHHHHHHHHHHHH
Confidence 1 00011122221 23455654433 478888999999999999999999998865
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.4e-20 Score=173.10 Aligned_cols=258 Identities=12% Similarity=0.149 Sum_probs=173.0
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCC-------------CCCCCHHHHhhcCCEEEEeC
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGV-------------PTKETPFEVAEASDVVITML 109 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~-------------~~~~s~~e~~~~aDiVi~~v 109 (355)
..+|||+|||+|.||+++|..|+++||+|++| +++++++.+++.|. ..++++++ ++.+|+||+|+
T Consensus 17 ~~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vilav 94 (318)
T 3hwr_A 17 FQGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDPSA-VQGADLVLFCV 94 (318)
T ss_dssp ---CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCGGG-GTTCSEEEECC
T ss_pred ccCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHHH-cCCCCEEEEEc
Confidence 35689999999999999999999999999999 88999998887542 22345544 57999999999
Q ss_pred CCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCce
Q 018506 110 PSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTL 189 (355)
Q Consensus 110 ~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~ 189 (355)
|.. ++++++..+.+.+. ++++|+.++++.... +.+.+.++ ..+ ..+..........|-. ......+.
T Consensus 95 k~~-~~~~~l~~l~~~l~-----~~~~iv~~~nGi~~~-~~l~~~~~-~~v--l~g~~~~~a~~~gP~~--~~~~~~g~- 161 (318)
T 3hwr_A 95 KST-DTQSAALAMKPALA-----KSALVLSLQNGVENA-DTLRSLLE-QEV--AAAVVYVATEMAGPGH--VRHHGRGE- 161 (318)
T ss_dssp CGG-GHHHHHHHHTTTSC-----TTCEEEEECSSSSHH-HHHHHHCC-SEE--EEEEEEEEEEEEETTE--EEEEEEEE-
T ss_pred ccc-cHHHHHHHHHHhcC-----CCCEEEEeCCCCCcH-HHHHHHcC-CcE--EEEEEEEeEEEcCCeE--EEEcCCce-
Confidence 986 88898887766653 456777777765332 34555543 111 0110000011222311 11112232
Q ss_pred EEEecCCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHH---------------------HHHHHHHHHHHHH
Q 018506 190 TFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA---------------------VSMLGVSEALTLG 248 (355)
Q Consensus 190 ~~~~gg~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~---------------------~~~~~~~Ea~~la 248 (355)
+.+|. .+..+.++++|+..+.+++...++-...|.|++.|.... .+..++.|+..++
T Consensus 162 -~~ig~-~~~~~~l~~~l~~~~~~~~~~~Di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~va 239 (318)
T 3hwr_A 162 -LVIEP-TSHGANLAAIFAAAGVPVETSDNVRGALWAKLILNCAYNALSAITQLPYGRLVRGEGVEAVMRDVMEECFAVA 239 (318)
T ss_dssp -EEECC-CTTTHHHHHHHHHTTCCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTSTTHHHHHHHHHHHHHHHH
T ss_pred -EEEcC-CHHHHHHHHHHHhCCCCcEechHHHHHHHHHHHHHhhhhHHHHHHCCCHHHHhcChhHHHHHHHHHHHHHHHH
Confidence 23444 345678999999999988888888899999999997543 2456788999999
Q ss_pred HHcCCCH-----HHHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHH
Q 018506 249 QSLGISA-----STLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQ 323 (355)
Q Consensus 249 ~~~Gi~~-----~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~ 323 (355)
++.|++. +.+.+.+.... ... .++..++..|++.+-++.. +++++.++++|+++|+++.
T Consensus 240 ~a~G~~l~~~~~~~~~~~~~~~~-~~~----sSM~qD~~~gr~tEid~i~-----------G~vv~~a~~~gv~tP~~~~ 303 (318)
T 3hwr_A 240 RAEGVKLPDDVALAIRRIAETMP-RQS----SSTAQDLARGKRSEIDHLN-----------GLIVRRGDALGIPVPANRV 303 (318)
T ss_dssp HHTTCCCCTTHHHHHHHHHHHST-TCC----CHHHHHHHTTCCCSGGGTH-----------HHHHHHHHHTTCCCHHHHH
T ss_pred HHcCCCCChHHHHHHHHHHHhcC-CCC----cHHHHHHHcCChhHHHHHH-----------HHHHHHHHHhCCCCcHHHH
Confidence 9999852 23334333322 111 1122344556666655543 4799999999999999999
Q ss_pred HHHHHHHHHH
Q 018506 324 AQDIYAKLCE 333 (355)
Q Consensus 324 ~~~~~~~~~~ 333 (355)
++++++..+.
T Consensus 304 l~~ll~~~e~ 313 (318)
T 3hwr_A 304 LHALVRLIED 313 (318)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999887664
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-20 Score=170.32 Aligned_cols=248 Identities=14% Similarity=0.126 Sum_probs=165.9
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCC----CcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHH
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAG----YKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDV 118 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G----~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~v 118 (355)
|.+|||+|||+|+||++++..|.++| |+|++|||++++ .|+..++++.++++++|+||+|+|. .+++++
T Consensus 2 m~~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~------~g~~~~~~~~~~~~~~D~vi~~v~~-~~~~~v 74 (262)
T 2rcy_A 2 MENIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN------TTLNYMSSNEELARHCDIIVCAVKP-DIAGSV 74 (262)
T ss_dssp CSSSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS------SSSEECSCHHHHHHHCSEEEECSCT-TTHHHH
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc------CceEEeCCHHHHHhcCCEEEEEeCH-HHHHHH
Confidence 34689999999999999999999999 799999999877 4677778899999999999999995 588888
Q ss_pred hcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceE-EeCCCCCChHHHhcCceEEEecC--
Q 018506 119 YNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVM-LDAPVSGGVLAAEAGTLTFMVGG-- 195 (355)
Q Consensus 119 l~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~-~~~pv~g~~~~~~~g~~~~~~gg-- 195 (355)
+..+.+.+. ++.++.++++..++ .+.+.++.. .. .+.+ ++.|..+ ..| .++++++
T Consensus 75 ~~~l~~~l~-----~~~vv~~~~gi~~~---~l~~~~~~~----~~----~v~~~p~~p~~~-----~~g-~~~~~~~~~ 132 (262)
T 2rcy_A 75 LNNIKPYLS-----SKLLISICGGLNIG---KLEEMVGSE----NK----IVWVMPNTPCLV-----GEG-SFIYCSNKN 132 (262)
T ss_dssp HHHSGGGCT-----TCEEEECCSSCCHH---HHHHHHCTT----SE----EEEEECCGGGGG-----TCE-EEEEEECTT
T ss_pred HHHHHHhcC-----CCEEEEECCCCCHH---HHHHHhCCC----Cc----EEEECCChHHHH-----cCC-eEEEEeCCC
Confidence 877654441 33466667777765 344444320 00 0223 2344433 245 5666655
Q ss_pred -CHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccc-
Q 018506 196 -SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICN--NLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWS- 271 (355)
Q Consensus 196 -~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~--n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~- 271 (355)
+++.++.++++|+.+|. ++++++.......++.. |.+...+...+.|+ +.+.|++++.+.+++..+...++.
T Consensus 133 ~~~~~~~~~~~ll~~~G~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~al~~~---~~~~Gl~~~~~~~~~~~~~~~~~~~ 208 (262)
T 2rcy_A 133 VNSTDKKYVNDIFNSCGI-IHEIKEKDMDIATAISGCGPAYVYLFIESLIDA---GVKNGLSRELSKNLVLQTIKGSVEM 208 (262)
T ss_dssp CCHHHHHHHHHHHHTSEE-EEECCGGGHHHHHHHTTSHHHHHHHHHHHHHHH---HHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCC-EEEeCHHHccHHHHHHccHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 68899999999999997 88888755555555532 44443333333333 789999999998888765432221
Q ss_pred ccCCCCCCCcccCCCCCCCC-CCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCC
Q 018506 272 SDSYNPVPGVMEGVPASRNY-GGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENG 335 (355)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g 335 (355)
.......+.++. +.+ .++++.. ..++..++.|++..+.+++.+.++++.+.+
T Consensus 209 ~~~~~~~~~~l~-----d~~~~~~~t~~-------~~l~~l~~~~~~~~~~~a~~~~~~r~~~~~ 261 (262)
T 2rcy_A 209 VKKSDQPVQQLK-----DNIVSPGGITA-------VGLYSLEKNSFKYTVMNAVEAACEKSKAMG 261 (262)
T ss_dssp HHHCSSCHHHHH-----HHHCCTTSHHH-------HHHHHHHHTTHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhcCCCHHHHH-----HhcCCCChHHH-------HHHHHHHHCChHHHHHHHHHHHHHHHHHhc
Confidence 100011122221 122 3444433 445556777999999999999999988754
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.84 E-value=8.9e-20 Score=163.24 Aligned_cols=202 Identities=18% Similarity=0.237 Sum_probs=141.3
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCC----cEEEEeCChhHHHHHHh-CCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHh
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGY----KMAVHDVNCNVMKMFSD-MGVPTKETPFEVAEASDVVITMLPSSSHVLDVY 119 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~----~V~v~dr~~~~~~~l~~-~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl 119 (355)
+|||+|||+|+||.+++..|.++|| +|++|||++++++.+.+ .|+..+.++.++++++|+||+|+|. +.+++++
T Consensus 2 ~~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVilav~~-~~~~~v~ 80 (247)
T 3gt0_A 2 DKQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEVAKNADILILSIKP-DLYASII 80 (247)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHHCCEECSCHHHHHHHCSEEEECSCT-TTHHHHC
T ss_pred CCeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHhCCEEeCChHHHHHhCCEEEEEeCH-HHHHHHH
Confidence 4799999999999999999999999 99999999999999875 5888888999999999999999974 6888988
Q ss_pred cCCCccccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEe--cCC
Q 018506 120 NGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMV--GGS 196 (355)
Q Consensus 120 ~~~~~~l~~~~~~~~~ivi~~-st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~--gg~ 196 (355)
.++.+.+. ++++||.. ++.... .+.+.++.. .... ..+++.|..++ .|...++. +++
T Consensus 81 ~~l~~~l~-----~~~~vvs~~~gi~~~---~l~~~~~~~---~~~v----~~~p~~p~~~~-----~g~~~~~~~~~~~ 140 (247)
T 3gt0_A 81 NEIKEIIK-----NDAIIVTIAAGKSIE---STENAFNKK---VKVV----RVMPNTPALVG-----EGMSALCPNEMVT 140 (247)
T ss_dssp ---CCSSC-----TTCEEEECSCCSCHH---HHHHHHCSC---CEEE----EEECCGGGGGT-----CEEEEEEECTTCC
T ss_pred HHHHhhcC-----CCCEEEEecCCCCHH---HHHHHhCCC---CcEE----EEeCChHHHHc-----CceEEEEeCCCCC
Confidence 77665543 45677754 444433 444544310 0000 12345554432 24434444 368
Q ss_pred HHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCHHHHHHHHHhcCCCcc
Q 018506 197 EDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTL-GQSLGISASTLTKILNSSSARCW 270 (355)
Q Consensus 197 ~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l-a~~~Gi~~~~~~~~~~~~~~~s~ 270 (355)
++.++.++++|+.+|. ++++++........+..... .++..+.|++.. +.+.|++++++.+++..+...++
T Consensus 141 ~~~~~~~~~l~~~~G~-~~~~~e~~~d~~~a~~g~gp--a~~~~~~eal~~a~~~~Gl~~~~a~~~~~~~~~gs~ 212 (247)
T 3gt0_A 141 EKDLEDVLNIFNSFGQ-TEIVSEKLMDVVTSVSGSSP--AYVYMIIEAMADAAVLDGMPRNQAYKFAAQAVLGSA 212 (247)
T ss_dssp HHHHHHHHHHHGGGEE-EEECCGGGHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-EEEeCHHHccHHHHHhccHH--HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999998 66665432222222222222 234457788887 99999999999999998765554
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.3e-20 Score=171.72 Aligned_cols=264 Identities=12% Similarity=0.081 Sum_probs=168.1
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCC--------------CCCCHHHHhhcCCEEEEeCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP--------------TKETPFEVAEASDVVITMLP 110 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~--------------~~~s~~e~~~~aDiVi~~v~ 110 (355)
+|||+|||+|.||+.+|..|+++|++|++|+|++ .+.+++.|.. .++++++ ++.+|+||+++|
T Consensus 2 ~mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~-~~~~D~vilavk 78 (312)
T 3hn2_A 2 SLRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD--YEAIAGNGLKVFSINGDFTLPHVKGYRAPEE-IGPMDLVLVGLK 78 (312)
T ss_dssp --CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT--HHHHHHTCEEEEETTCCEEESCCCEESCHHH-HCCCSEEEECCC
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc--HHHHHhCCCEEEcCCCeEEEeeceeecCHHH-cCCCCEEEEecC
Confidence 3799999999999999999999999999999986 3667665431 2345544 578999999999
Q ss_pred CchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceE
Q 018506 111 SSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLT 190 (355)
Q Consensus 111 ~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~ 190 (355)
.. ++++++..+.+.+. ++++||.+.++... .+.+.+.++...+.. +..+..+-..++-.....+.-.
T Consensus 79 ~~-~~~~~l~~l~~~l~-----~~~~iv~l~nGi~~-~~~l~~~~~~~~v~~------~~~~~~a~~~~p~~v~~~~~g~ 145 (312)
T 3hn2_A 79 TF-ANSRYEELIRPLVE-----EGTQILTLQNGLGN-EEALATLFGAERIIG------GVAFLCSNRGEPGEVHHLGAGR 145 (312)
T ss_dssp GG-GGGGHHHHHGGGCC-----TTCEEEECCSSSSH-HHHHHHHTCGGGEEE------EEEEEECCBCSSSEEEECEEEE
T ss_pred CC-CcHHHHHHHHhhcC-----CCCEEEEecCCCCc-HHHHHHHCCCCcEEE------EEEEeeeEEcCCcEEEECCCCe
Confidence 64 77888877666653 34677777776532 245666654321110 0122222222111111111112
Q ss_pred EEec----CCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHH---------------------HHHHHHHHHH
Q 018506 191 FMVG----GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA---------------------VSMLGVSEAL 245 (355)
Q Consensus 191 ~~~g----g~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~---------------------~~~~~~~Ea~ 245 (355)
+.+| .+.+..+.+.++|+..+.+++...++-...|.|++.|...+ .+..++.|+.
T Consensus 146 ~~ig~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~G~l~~~~~~~~l~~~~~~E~~ 225 (312)
T 3hn2_A 146 IILGEFLPRDTGRIEELAAMFRQAGVDCRTTDDLKRARWEKLVWNIPFNGLCALLQQPVNLILARDVSRKLVRGIMLEVI 225 (312)
T ss_dssp EEEEESSCCCSHHHHHHHHHHHHTTCCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTSHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCccHHHHHHHHHHHhCCCCcEEChHHHHHHHHHHHHHHhHHHHHHHHCCCHHHHHhChhHHHHHHHHHHHHH
Confidence 3333 24567889999999999988888889899999999987643 2456788999
Q ss_pred HHHHHcC--CCH--HHHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHH
Q 018506 246 TLGQSLG--ISA--STLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLT 321 (355)
Q Consensus 246 ~la~~~G--i~~--~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~ 321 (355)
.++++.| ++. +....++......+.. ..++..++..|++.+-++. .+++++.++++|+++|++
T Consensus 226 ~va~a~G~~~~~~~~~~~~~~~~~~~~~~~--~sSM~qD~~~gr~tEid~i-----------~G~vv~~a~~~gv~~P~~ 292 (312)
T 3hn2_A 226 AGANAQGLATFIADGYVDDMLEFTDAMGEY--KPSMEIDREEGRPLEIAAI-----------FRTPLAYGAREGIAMPRV 292 (312)
T ss_dssp HHHHTSCCSSCCCTTHHHHHHHHHTTSCSC--CCHHHHHHHTTCCCCHHHH-----------THHHHHHHHHTTCCCHHH
T ss_pred HHHHHcCCccCCCHHHHHHHHHHHhcCCCC--CchHHHHHHhCCCccHHHH-----------hhHHHHHHHHhCCCCCHH
Confidence 9999999 642 2222222211111110 0011223333443333332 358999999999999999
Q ss_pred HHHHHHHHHHHHCCCC
Q 018506 322 SQAQDIYAKLCENGHD 337 (355)
Q Consensus 322 ~~~~~~~~~~~~~g~g 337 (355)
+.++++++.....|+-
T Consensus 293 ~~l~~ll~~~~~~~~~ 308 (312)
T 3hn2_A 293 EMLATLLEQATGEGHH 308 (312)
T ss_dssp HHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHhcccc
Confidence 9999999988877754
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.6e-20 Score=171.65 Aligned_cols=193 Identities=17% Similarity=0.275 Sum_probs=134.3
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH-----------hCC------------------CCCCCC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS-----------DMG------------------VPTKET 94 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~-----------~~g------------------~~~~~s 94 (355)
.++||+|||+|.||.+||..|+++||+|++|||++++++... +.| +..+++
T Consensus 14 ~~~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~ 93 (302)
T 1f0y_A 14 IVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTD 93 (302)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESC
T ss_pred cCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEecC
Confidence 457899999999999999999999999999999998876532 222 334678
Q ss_pred HHHHhhcCCEEEEeCCCchHHH-HHhcCCCccccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhchhhhccCCCCCceE
Q 018506 95 PFEVAEASDVVITMLPSSSHVL-DVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNCILKEKKDSWENPVM 172 (355)
Q Consensus 95 ~~e~~~~aDiVi~~v~~~~~~~-~vl~~~~~~l~~~~~~~~~ivi~~-st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~ 172 (355)
+.++++++|+||+|+|++.+++ .++..+.+.+. ++++|++. |+..+. .+.+.+.. .....+.||
T Consensus 94 ~~~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~-----~~~iv~s~ts~i~~~---~l~~~~~~------~~~~~g~h~ 159 (302)
T 1f0y_A 94 AASVVHSTDLVVEAIVENLKVKNELFKRLDKFAA-----EHTIFASNTSSLQIT---SIANATTR------QDRFAGLHF 159 (302)
T ss_dssp HHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSC-----TTCEEEECCSSSCHH---HHHTTSSC------GGGEEEEEE
T ss_pred HHHhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCC-----CCeEEEECCCCCCHH---HHHHhcCC------cccEEEEec
Confidence 8888899999999999875543 45554444432 45577654 444443 33332211 001112566
Q ss_pred EeCCCCCChHHHhcCceEEEecC---CHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018506 173 LDAPVSGGVLAAEAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQ 249 (355)
Q Consensus 173 ~~~pv~g~~~~~~~g~~~~~~gg---~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~ 249 (355)
.+ |.. .+.+..++++ +++.++.+.++++.+|+.++++++. .+ ++++|++. .+++|++.+++
T Consensus 160 ~~-P~~-------~~~~~~i~~g~~~~~e~~~~~~~l~~~~G~~~v~~~~~-~g---~i~nr~l~----~~~~Ea~~l~~ 223 (302)
T 1f0y_A 160 FN-PVP-------VMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDT-PG---FIVNRLLV----PYLMEAIRLYE 223 (302)
T ss_dssp CS-STT-------TCCEEEEECCTTCCHHHHHHHHHHHHHTTCEEEEECSC-TT---TTHHHHHH----HHHHHHHHHHH
T ss_pred CC-Ccc-------cCceEEEeCCCCCCHHHHHHHHHHHHHcCCceEEecCc-cc---ccHHHHHH----HHHHHHHHHHH
Confidence 55 321 1233444444 8999999999999999988888762 22 45555543 45799999999
Q ss_pred HcCCCHHHHHHHHHhcC
Q 018506 250 SLGISASTLTKILNSSS 266 (355)
Q Consensus 250 ~~Gi~~~~~~~~~~~~~ 266 (355)
+.|++++++..++..+.
T Consensus 224 ~g~~~~~~id~~~~~g~ 240 (302)
T 1f0y_A 224 RGDASKEDIDTAMKLGA 240 (302)
T ss_dssp TTSSCHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHhCC
Confidence 99999999999987543
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.5e-20 Score=181.51 Aligned_cols=191 Identities=21% Similarity=0.280 Sum_probs=141.8
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh-----------CCC-------------CCCCCHHHHh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----------MGV-------------PTKETPFEVA 99 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~-----------~g~-------------~~~~s~~e~~ 99 (355)
..+||+|||+|.||.+||..|+++||+|++||+++++++.+.+ .|. ..++++ +.+
T Consensus 4 ~~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 82 (483)
T 3mog_A 4 NVQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDI-HAL 82 (483)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCG-GGG
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCH-HHh
Confidence 4579999999999999999999999999999999998877543 232 235566 467
Q ss_pred hcCCEEEEeCCCchHHH-HHhcCCCccccCCCCCCCeEE-EEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeC-C
Q 018506 100 EASDVVITMLPSSSHVL-DVYNGPNGLLQGGNSVRPQLL-IDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA-P 176 (355)
Q Consensus 100 ~~aDiVi~~v~~~~~~~-~vl~~~~~~l~~~~~~~~~iv-i~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~-p 176 (355)
++||+||+|+|++.+++ +++.++.+.+. +++++ .|+|+.++.. +.+.+.. ...+.+.||+++ |
T Consensus 83 ~~aDlVIeAVpe~~~vk~~v~~~l~~~~~-----~~~IlasntSti~i~~---ia~~~~~------p~~~ig~hf~~Pa~ 148 (483)
T 3mog_A 83 AAADLVIEAASERLEVKKALFAQLAEVCP-----PQTLLTTNTSSISITA---IAAEIKN------PERVAGLHFFNPAP 148 (483)
T ss_dssp GGCSEEEECCCCCHHHHHHHHHHHHHHSC-----TTCEEEECCSSSCHHH---HTTTSSS------GGGEEEEEECSSTT
T ss_pred cCCCEEEEcCCCcHHHHHHHHHHHHHhhc-----cCcEEEecCCCCCHHH---HHHHccC------ccceEEeeecChhh
Confidence 89999999999886664 55555444442 45566 5688877653 3332221 011123677773 3
Q ss_pred CCCChHHHhcCceEEEecC---CHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 018506 177 VSGGVLAAEAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGI 253 (355)
Q Consensus 177 v~g~~~~~~~g~~~~~~gg---~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi 253 (355)
++ .++.++++ ++++++.+.++++.+|+.++++++.. + +++||++.. .++|++.++++.+.
T Consensus 149 v~---------~Lvevv~g~~Ts~e~~~~~~~l~~~lGk~~v~v~d~~-G---fi~Nr~l~~----~~~Ea~~l~~~g~~ 211 (483)
T 3mog_A 149 VM---------KLVEVVSGLATAAEVVEQLCELTLSWGKQPVRCHSTP-G---FIVNRVARP----YYSEAWRALEEQVA 211 (483)
T ss_dssp TC---------CEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEEESCT-T---TTHHHHTHH----HHHHHHHHHHTTCS
T ss_pred hC---------CeEEEecCCCCCHHHHHHHHHHHHHhCCEEEEEeccC-c---chHHHHHHH----HHHHHHHHHHhCCC
Confidence 32 45667776 89999999999999999999998742 2 677777665 47899999999999
Q ss_pred CHHHHHHHHHhcC
Q 018506 254 SASTLTKILNSSS 266 (355)
Q Consensus 254 ~~~~~~~~~~~~~ 266 (355)
+++++.+++..+.
T Consensus 212 ~~~~id~a~~~~~ 224 (483)
T 3mog_A 212 APEVIDAALRDGA 224 (483)
T ss_dssp CHHHHHHHHHHTT
T ss_pred CHHHHHHHHHhcC
Confidence 9999999998654
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=99.82 E-value=7.2e-20 Score=170.08 Aligned_cols=253 Identities=13% Similarity=0.043 Sum_probs=167.4
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCC---------------CCCCCCHHHHhhcCCEEEEeC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG---------------VPTKETPFEVAEASDVVITML 109 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g---------------~~~~~s~~e~~~~aDiVi~~v 109 (355)
+|||+|||+|.||+.+|..|+++|++|++|+|++ .+.+++.| +..+++++++.+.+|+||+||
T Consensus 2 ~mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlVilav 79 (320)
T 3i83_A 2 SLNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD--YETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPDCTLLCI 79 (320)
T ss_dssp -CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT--HHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCSEEEECC
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh--HHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCCEEEEec
Confidence 3899999999999999999999999999999986 25565433 223456666666899999999
Q ss_pred CCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCC------ChHH
Q 018506 110 PSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSG------GVLA 183 (355)
Q Consensus 110 ~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g------~~~~ 183 (355)
|.. ++++++..+.+.+. ++++|+.+.++.... +.+.+.++.. .++.++++. .-..
T Consensus 80 K~~-~~~~~l~~l~~~l~-----~~t~Iv~~~nGi~~~-~~l~~~~~~~------------~vl~g~~~~~a~~~~pg~v 140 (320)
T 3i83_A 80 KVV-EGADRVGLLRDAVA-----PDTGIVLISNGIDIE-PEVAAAFPDN------------EVISGLAFIGVTRTAPGEI 140 (320)
T ss_dssp CCC-TTCCHHHHHTTSCC-----TTCEEEEECSSSSCS-HHHHHHSTTS------------CEEEEEEEEEEEEEETTEE
T ss_pred CCC-ChHHHHHHHHhhcC-----CCCEEEEeCCCCChH-HHHHHHCCCC------------cEEEEEEEeceEEcCCCEE
Confidence 975 66777776655553 345777777665321 4455555421 233333221 0000
Q ss_pred HhcCceEEEec----CCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHH--------------------HHHH
Q 018506 184 AEAGTLTFMVG----GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA--------------------VSML 239 (355)
Q Consensus 184 ~~~g~~~~~~g----g~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~--------------------~~~~ 239 (355)
...+.-.+.+| .+.+..+.+.++|+..+.++.+..++-...|.|++.|...+ .+..
T Consensus 141 ~~~~~~~~~ig~~~~~~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~N~ltal~~~~~g~~~~~~~~~l~~~ 220 (320)
T 3i83_A 141 WHQAYGRLMLGNYPGGVSERVKTLAAAFEEAGIDGIATENITTARWQKCVWNAAFNPLSVLSGGLDTLDILSTQEGFVRA 220 (320)
T ss_dssp EEEEEEEEEEEESSSCCCHHHHHHHHHHHHTTSCEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHCHHHHHH
T ss_pred EECCCCEEEEecCCCCccHHHHHHHHHHHhCCCCceECHHHHHHHHHHHHHHHhhhHHHHHHCCCHHHHHhCcHHHHHHH
Confidence 11112233343 34567889999999999998888899999999999986432 2456
Q ss_pred HHHHHHHHHHHcCCCH-----HHHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHh
Q 018506 240 GVSEALTLGQSLGISA-----STLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEV 314 (355)
Q Consensus 240 ~~~Ea~~la~~~Gi~~-----~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~ 314 (355)
++.|+..++++.|++. +.+++........ ..++..++..|++.+-++. .+++++.++++
T Consensus 221 ~~~E~~~va~a~G~~l~~~~~~~~~~~~~~~~~~-----~sSM~qD~~~gr~tEid~i-----------~G~vv~~a~~~ 284 (320)
T 3i83_A 221 IMQEIRAVAAANGHPLPEDIVEKNVASTYKMPPY-----KTSMLVDFEAGQPMETEVI-----------LGNAVRAGRRT 284 (320)
T ss_dssp HHHHHHHHHHHTTCCCCTTHHHHHHHHHHHSCCC-----CCHHHHHHHHTCCCCHHHH-----------THHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCC-----CCcHHHHHHhCCCchHHHH-----------ccHHHHHHHHh
Confidence 7889999999999863 2233333222110 0011222333433333332 35799999999
Q ss_pred CCCChHHHHHHHHHHHHHHC
Q 018506 315 GVDCPLTSQAQDIYAKLCEN 334 (355)
Q Consensus 315 gv~~pi~~~~~~~~~~~~~~ 334 (355)
|+++|+++.++++++..+.+
T Consensus 285 gv~~P~~~~l~~~l~~~e~~ 304 (320)
T 3i83_A 285 RVAIPHLESVYALMKLLELR 304 (320)
T ss_dssp TCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 99999999999988876653
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.82 E-value=4.4e-19 Score=167.07 Aligned_cols=267 Identities=12% Similarity=0.153 Sum_probs=162.0
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC-CC--------------CCCCCHHHHhhcCCEEEEe
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GV--------------PTKETPFEVAEASDVVITM 108 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~-g~--------------~~~~s~~e~~~~aDiVi~~ 108 (355)
++|||+|||+|.||..+|..|+++||+|++|+|++++++.+.+. +. ...+++.++++++|+||+|
T Consensus 3 ~~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~ 82 (359)
T 1bg6_A 3 ESKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIV 82 (359)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEEC
T ss_pred CcCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEEEEe
Confidence 45899999999999999999999999999999999999888764 21 2456888888899999999
Q ss_pred CCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEe---CCCCCChHH--
Q 018506 109 LPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD---APVSGGVLA-- 183 (355)
Q Consensus 109 v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~---~pv~g~~~~-- 183 (355)
+|.. ..++++..+.+.+. ++++|+++.+..+.. .++.+.+.+. + ...+.|++ .|+.+....
T Consensus 83 v~~~-~~~~~~~~l~~~l~-----~~~~vv~~~~~~~~~-~~~~~~l~~~-----~--~~~v~~~~~~~~~~~~~~~gpg 148 (359)
T 1bg6_A 83 VPAI-HHASIAANIASYIS-----EGQLIILNPGATGGA-LEFRKILREN-----G--APEVTIGETSSMLFTCRSERPG 148 (359)
T ss_dssp SCGG-GHHHHHHHHGGGCC-----TTCEEEESSCCSSHH-HHHHHHHHHT-----T--CCCCEEEEESSCSEEEECSSTT
T ss_pred CCch-HHHHHHHHHHHhCC-----CCCEEEEcCCCchHH-HHHHHHHHhc-----C--CCCeEEEEecCCcEEEEeCCCC
Confidence 9986 55777766544443 456788885534433 2344444321 1 00123433 444322111
Q ss_pred -Hh----cCceEEEe---cCCHHHHHHHHHHHHHcCCCeEEeCCc-------------------chHHHHH------HH-
Q 018506 184 -AE----AGTLTFMV---GGSEDAYQAAKPLFLSMGKNTIYCGGA-------------------GNGAAAK------IC- 229 (355)
Q Consensus 184 -~~----~g~~~~~~---gg~~~~~~~v~~ll~~~g~~~~~~g~~-------------------g~a~~~K------l~- 229 (355)
.. .+...+-. +++++.++.++++|..+. ...++ +.+...| +-
T Consensus 149 ~v~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~----~~~di~~k~~~nvn~~~n~~~al~~~~~~~~~~~~~~~~~ 224 (359)
T 1bg6_A 149 QVTVNAIKGAMDFACLPAAKAGWALEQIGSVLPQYV----AVENVLHTSLTNVNAVMHPLPTLLNAARCESGTPFQYYLE 224 (359)
T ss_dssp EEEEEEECSCEEEEEESGGGHHHHHHHHTTTCTTEE----ECSCHHHHHHCCHHHHHTHHHHHTTHHHHHTTCCCBHHHH
T ss_pred EEEEEEeecceEEEeccccccHHHHHHHHHHhhhcE----EcCChHhhhccCCCccccHHHHHhhhchhhcCCccchhhc
Confidence 10 11211111 245556777777776542 11211 1111111 00
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcccc--cCCCCCCCcccCCCCCCCCCCCcchh--hHHHH
Q 018506 230 --NNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSS--DSYNPVPGVMEGVPASRNYGGGFASK--LMAKD 303 (355)
Q Consensus 230 --~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~kd 303 (355)
.+........++.|+..++++.|++++++.+.+......++.. ... ..+.++.+. ..+ ..++ .+.||
T Consensus 225 ~~~~~~~~~~~~~~~E~~~va~a~G~~~~~~~~~~~~~~~~~~~~l~~~~-~~~sm~~d~-----~~~-~e~~~~~~~~D 297 (359)
T 1bg6_A 225 GITPSVGSLAEKVDAERIAIAKAFDLNVPSVCEWYKESYGQSPATIYEAV-QGNPAYRGI-----AGP-INLNTRYFFED 297 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHC-------CCSHHHHH-HTCGGGTTC-----BCC-SSSCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHhCCCcccHHHHH-hcchhhcCC-----CCC-CCCCccceecC
Confidence 1223455678889999999999999877777766543322210 000 011122211 111 1234 67899
Q ss_pred H----HHHHHHHHHhCCCChHHHHHHHHHHHHHHCC
Q 018506 304 L----NLALASAKEVGVDCPLTSQAQDIYAKLCENG 335 (355)
Q Consensus 304 ~----~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g 335 (355)
+ +.++++|+++|+++|+++.++++++.....+
T Consensus 298 ~~~~~g~~~~~a~~~gv~~P~~~~l~~~~~~~~~~~ 333 (359)
T 1bg6_A 298 VSTGLVPLSELGRAVNVPTPLIDAVLDLISSLIDTD 333 (359)
T ss_dssp HHTTHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTCC
T ss_pred cCccHHHHHHHHHHcCCCchHHHHHHHHHHHHHCCC
Confidence 8 7999999999999999999999999876653
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.5e-19 Score=165.66 Aligned_cols=176 Identities=16% Similarity=0.242 Sum_probs=138.8
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCC--cEEEEeCChhHHHHHHhCCCC--CCCCHHH-HhhcCCEEEEeCCCchHHHH
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMKMFSDMGVP--TKETPFE-VAEASDVVITMLPSSSHVLD 117 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~--~V~v~dr~~~~~~~l~~~g~~--~~~s~~e-~~~~aDiVi~~v~~~~~~~~ 117 (355)
+.+|||+|||+|.||.++|..|.++|+ +|++|||++++++.+.+.|+. .++++.+ +++++|+||+|+|.. .+.+
T Consensus 31 ~~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilavp~~-~~~~ 109 (314)
T 3ggo_A 31 LSMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVR-TFRE 109 (314)
T ss_dssp CSCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECSCGG-GHHH
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEeCCHH-HHHH
Confidence 345899999999999999999999999 999999999999988888763 4678888 889999999999975 6777
Q ss_pred HhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEE-eCCCCCC----hHHHh----cCc
Q 018506 118 VYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML-DAPVSGG----VLAAE----AGT 188 (355)
Q Consensus 118 vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~-~~pv~g~----~~~~~----~g~ 188 (355)
++.++.+.++ ++++|+|++++++...+.+.+.++. .|+ ..|+.|+ +..+. .+.
T Consensus 110 vl~~l~~~l~-----~~~iv~d~~Svk~~~~~~~~~~l~~-------------~~v~~hPm~G~e~sG~~~A~~~Lf~g~ 171 (314)
T 3ggo_A 110 IAKKLSYILS-----EDATVTDQGSVKGKLVYDLENILGK-------------RFVGGHPIAGTEKSGVEYSLDNLYEGK 171 (314)
T ss_dssp HHHHHHHHSC-----TTCEEEECCSCCTHHHHHHHHHHGG-------------GEECEEECCCCCCCSGGGCCTTTTTTC
T ss_pred HHHHHhhccC-----CCcEEEECCCCcHHHHHHHHHhcCC-------------CEEecCcccCCcccchhhhhhhhhcCC
Confidence 7766544442 5679999999988777777776542 233 3566653 33322 567
Q ss_pred eEEEec---CCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHH
Q 018506 189 LTFMVG---GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVS 237 (355)
Q Consensus 189 ~~~~~g---g~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~ 237 (355)
..+++. ++++.++.++++|+.+|.+++++++......++++........
T Consensus 172 ~~il~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~~hD~~~a~~s~lph~~a 223 (314)
T 3ggo_A 172 KVILTPTKKTDKKRLKLVKRVWEDVGGVVEYMSPELHDYVFGVVSHLPHAVA 223 (314)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHHHHHHHHH
Confidence 777773 5889999999999999999999998888888888877655443
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-19 Score=174.35 Aligned_cols=191 Identities=17% Similarity=0.189 Sum_probs=133.5
Q ss_pred CCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHH--------HHHhCCC-------------CCCCCHHHHhh
Q 018506 42 SCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMK--------MFSDMGV-------------PTKETPFEVAE 100 (355)
Q Consensus 42 ~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~--------~l~~~g~-------------~~~~s~~e~~~ 100 (355)
++.++||+|||+|.||..||..|+++|++|++||+++++.. .+.+.|. ..+++++ +++
T Consensus 51 ~~~i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~-al~ 129 (460)
T 3k6j_A 51 AYDVNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFH-KLS 129 (460)
T ss_dssp CCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGG-GCT
T ss_pred cccCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHH-HHc
Confidence 35668999999999999999999999999999999998432 2333332 3456764 678
Q ss_pred cCCEEEEeCCCchHHHH-HhcCCCccccCCCCCCCeEEEE-cCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCC
Q 018506 101 ASDVVITMLPSSSHVLD-VYNGPNGLLQGGNSVRPQLLID-SSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVS 178 (355)
Q Consensus 101 ~aDiVi~~v~~~~~~~~-vl~~~~~~l~~~~~~~~~ivi~-~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~ 178 (355)
+||+||+|||++.+++. ++.++.+.++ +++++++ +|+.++. .+.+.+.+ ...+.+.||++ |+.
T Consensus 130 ~aDlVIeAVpe~~~vk~~v~~~l~~~~~-----~~aIlasnTSsl~i~---~ia~~~~~------p~r~iG~Hffn-Pv~ 194 (460)
T 3k6j_A 130 NCDLIVESVIEDMKLKKELFANLENICK-----STCIFGTNTSSLDLN---EISSVLRD------PSNLVGIHFFN-PAN 194 (460)
T ss_dssp TCSEEEECCCSCHHHHHHHHHHHHTTSC-----TTCEEEECCSSSCHH---HHHTTSSS------GGGEEEEECCS-STT
T ss_pred cCCEEEEcCCCCHHHHHHHHHHHHhhCC-----CCCEEEecCCChhHH---HHHHhccC------CcceEEEEecc-hhh
Confidence 99999999998766654 4444443432 4567754 5555543 34433321 00112367777 332
Q ss_pred CChHHHhcCceE-EEecC--CHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 018506 179 GGVLAAEAGTLT-FMVGG--SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISA 255 (355)
Q Consensus 179 g~~~~~~~g~~~-~~~gg--~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~ 255 (355)
...+. ++.|. ++++++.+.++++.+|+.++++++ +.+ .++|+++.. .++|++.++++.|+++
T Consensus 195 -------~m~LvEIv~g~~Ts~e~~~~~~~l~~~lGk~~v~v~d-~pG---fi~Nril~~----~~~EA~~l~~~~Ga~~ 259 (460)
T 3k6j_A 195 -------VIRLVEIIYGSHTSSQAIATAFQACESIKKLPVLVGN-CKS---FVFNRLLHV----YFDQSQKLMYEYGYLP 259 (460)
T ss_dssp -------TCCEEEEECCSSCCHHHHHHHHHHHHHTTCEEEEESS-CCH---HHHHHHHHH----HHHHHHHHHHTSCCCH
T ss_pred -------hCCEEEEEeCCCCCHHHHHHHHHHHHHhCCEEEEEec-ccH---HHHHHHHHH----HHHHHHHHHHHcCCCH
Confidence 12233 34442 899999999999999999999997 333 244555443 4789999999999999
Q ss_pred HHHHHHHH
Q 018506 256 STLTKILN 263 (355)
Q Consensus 256 ~~~~~~~~ 263 (355)
+++.+++.
T Consensus 260 e~ID~a~~ 267 (460)
T 3k6j_A 260 HQIDKIIT 267 (460)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999987
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.81 E-value=7.4e-19 Score=160.15 Aligned_cols=176 Identities=17% Similarity=0.276 Sum_probs=136.4
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCC--cEEEEeCChhHHHHHHhCCCC--CCCCHHHHhh-cCCEEEEeCCCchHHHHHh
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMKMFSDMGVP--TKETPFEVAE-ASDVVITMLPSSSHVLDVY 119 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~--~V~v~dr~~~~~~~l~~~g~~--~~~s~~e~~~-~aDiVi~~v~~~~~~~~vl 119 (355)
||||+|||+|.||.+++..|.++|+ +|++|||++++.+.+.+.|+. ..+++.++++ ++|+||+|+|.. .+.+++
T Consensus 1 m~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~aDvVilavp~~-~~~~v~ 79 (281)
T 2g5c_A 1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVR-TFREIA 79 (281)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHH-HHHHHH
T ss_pred CcEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccCCHHHHhcCCCCEEEEcCCHH-HHHHHH
Confidence 4799999999999999999999999 899999999999888877765 3567888888 999999999965 677777
Q ss_pred cCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCC----ChHHH----hcCceEE
Q 018506 120 NGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSG----GVLAA----EAGTLTF 191 (355)
Q Consensus 120 ~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g----~~~~~----~~g~~~~ 191 (355)
..+.+.++ ++.+|++++++.+...+.+.+.++. ..+...|+.+ ++..+ ..+..++
T Consensus 80 ~~l~~~l~-----~~~iv~~~~~~~~~~~~~l~~~l~~------------~~v~~~p~~~~~~~gp~~a~~~l~~g~~~~ 142 (281)
T 2g5c_A 80 KKLSYILS-----EDATVTDQGSVKGKLVYDLENILGK------------RFVGGHPIAGTEKSGVEYSLDNLYEGKKVI 142 (281)
T ss_dssp HHHHHHSC-----TTCEEEECCSCCTHHHHHHHHHHGG------------GEECEEEECCCSCCSGGGCCSSTTTTCEEE
T ss_pred HHHHhhCC-----CCcEEEECCCCcHHHHHHHHHhccc------------cceeeccccCCccCChhhhhhHHhCCCCEE
Confidence 65433332 4569999999887766777766642 0122244443 23332 2566677
Q ss_pred Ee---cCCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHH
Q 018506 192 MV---GGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSM 238 (355)
Q Consensus 192 ~~---gg~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~ 238 (355)
++ +++++..+.++++|+.+|.+++++++...+.++|++.|.......
T Consensus 143 ~~~~~~~~~~~~~~v~~l~~~~g~~~~~~~~~~~d~~~~~~~~~~~~~a~ 192 (281)
T 2g5c_A 143 LTPTKKTDKKRLKLVKRVWEDVGGVVEYMSPELHDYVFGVVSHLPHAVAF 192 (281)
T ss_dssp ECCCSSSCHHHHHHHHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHHHH
T ss_pred EecCCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHHHHHHHHHH
Confidence 77 678999999999999999988899987789999999998765433
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=4.3e-19 Score=161.97 Aligned_cols=196 Identities=15% Similarity=0.181 Sum_probs=138.6
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC-----------C--------------CCCCCCHHHH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-----------G--------------VPTKETPFEV 98 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~-----------g--------------~~~~~s~~e~ 98 (355)
.++||+|||+|.||+.||..|+++|++|++|||++++++.+.+. + +..++++.++
T Consensus 3 ~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~ 82 (283)
T 4e12_A 3 GITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQA 82 (283)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHH
Confidence 45789999999999999999999999999999999988766542 1 3556788888
Q ss_pred hhcCCEEEEeCCCchHH-HHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCC
Q 018506 99 AEASDVVITMLPSSSHV-LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPV 177 (355)
Q Consensus 99 ~~~aDiVi~~v~~~~~~-~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv 177 (355)
++++|+||+++|...++ +.++.++.+.+. ++.++++.+++.+. ..+.+.+... ....+.|+.+++
T Consensus 83 ~~~aDlVi~av~~~~~~~~~v~~~l~~~~~-----~~~il~s~tS~~~~--~~la~~~~~~------~~~ig~h~~~p~- 148 (283)
T 4e12_A 83 VKDADLVIEAVPESLDLKRDIYTKLGELAP-----AKTIFATNSSTLLP--SDLVGYTGRG------DKFLALHFANHV- 148 (283)
T ss_dssp TTTCSEEEECCCSCHHHHHHHHHHHHHHSC-----TTCEEEECCSSSCH--HHHHHHHSCG------GGEEEEEECSST-
T ss_pred hccCCEEEEeccCcHHHHHHHHHHHHhhCC-----CCcEEEECCCCCCH--HHHHhhcCCC------cceEEEccCCCc-
Confidence 99999999999986444 345544433332 45688755444432 3455544321 111125666532
Q ss_pred CCChHHHhcCceEEEecC---CHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 018506 178 SGGVLAAEAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGIS 254 (355)
Q Consensus 178 ~g~~~~~~~g~~~~~~gg---~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~ 254 (355)
....+..++.+ +++.++.++++++.+|+.+++++....+. ++++++. ..+.|++.++++.+++
T Consensus 149 -------~~~~lvevv~~~~t~~~~~~~~~~l~~~~g~~~v~v~~~~~g~---i~nr~~~----~~~~ea~~l~~~g~~~ 214 (283)
T 4e12_A 149 -------WVNNTAEVMGTTKTDPEVYQQVVEFASAIGMVPIELKKEKAGY---VLNSLLV----PLLDAAAELLVDGIAD 214 (283)
T ss_dssp -------TTSCEEEEEECTTSCHHHHHHHHHHHHHTTCEEEECSSCCTTT---THHHHHH----HHHHHHHHHHHTTSCC
T ss_pred -------ccCceEEEEeCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCE---EehHHHH----HHHHHHHHHHHhCCCC
Confidence 22344555554 78999999999999999999885423333 3444443 3578999999999999
Q ss_pred HHHHHHHHHhcCC
Q 018506 255 ASTLTKILNSSSA 267 (355)
Q Consensus 255 ~~~~~~~~~~~~~ 267 (355)
++++.+++..+.+
T Consensus 215 ~~~id~~~~~~~g 227 (283)
T 4e12_A 215 PETIDKTWRIGTG 227 (283)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccC
Confidence 9999999986543
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.79 E-value=2.6e-18 Score=156.39 Aligned_cols=195 Identities=14% Similarity=0.183 Sum_probs=142.4
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCC--CCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCC
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP--TKETPFEVAEASDVVITMLPSSSHVLDVYNGPN 123 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~--~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~ 123 (355)
|||+|||+|.||.+++..|.+.||+|++|||++++++.+.+.|.. ..+++.++ +++|+||+|+|. ..+++++..+.
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~D~vi~av~~-~~~~~~~~~l~ 78 (279)
T 2f1k_A 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLL-QTAKIIFLCTPI-QLILPTLEKLI 78 (279)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGG-TTCSEEEECSCH-HHHHHHHHHHG
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCCCccccCCHHHh-CCCCEEEEECCH-HHHHHHHHHHH
Confidence 689999999999999999999999999999999999988877764 45678888 899999999995 57788877654
Q ss_pred ccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCC----ChHHH----hcCceEEEec-
Q 018506 124 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSG----GVLAA----EAGTLTFMVG- 194 (355)
Q Consensus 124 ~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g----~~~~~----~~g~~~~~~g- 194 (355)
+.+. ++++|+++++.++...+.+.+.+. ..+...|+.| ++..+ ..+..++++.
T Consensus 79 ~~~~-----~~~~vv~~~~~~~~~~~~~~~~~~-------------~~~~~~p~~g~~~~gp~~a~~~~~~g~~~~~~~~ 140 (279)
T 2f1k_A 79 PHLS-----PTAIVTDVASVKTAIAEPASQLWS-------------GFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPT 140 (279)
T ss_dssp GGSC-----TTCEEEECCSCCHHHHHHHHHHST-------------TCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEEC
T ss_pred hhCC-----CCCEEEECCCCcHHHHHHHHHHhC-------------CEeecCcccCCccCCHHHHhHHHhCCCcEEEecC
Confidence 4442 457999998888776555544321 1223336553 22222 2455555553
Q ss_pred --CCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--HHHHHHHHHh
Q 018506 195 --GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGIS--ASTLTKILNS 264 (355)
Q Consensus 195 --g~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~--~~~~~~~~~~ 264 (355)
++++..+.++++|+.+|.+++++++.....+.|++.|...+... ++.++ +...|++ .+....++..
T Consensus 141 ~~~~~~~~~~v~~l~~~~g~~~~~~~~~~~~~~~~~~~~~p~~i~~-al~~~---~~~~~~~~~~~~~~~l~~~ 210 (279)
T 2f1k_A 141 EYTDPEQLACLRSVLEPLGVKIYLCTPADHDQAVAWISHLPVMVSA-ALIQA---CAGEKDGDILKLAQNLASS 210 (279)
T ss_dssp TTCCHHHHHHHHHHHGGGTCEEEECCHHHHHHHHHHHTHHHHHHHH-HHHHH---HHTCSCHHHHHHHHHHCCH
T ss_pred CCCCHHHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHhhHHHHHHH-HHHHH---HHhcccccchhHHHhhcCC
Confidence 47889999999999999989999988899999999998555443 33333 3455655 4555555543
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.4e-19 Score=156.67 Aligned_cols=170 Identities=19% Similarity=0.248 Sum_probs=122.2
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEE-EeCChhHHHHHHh-CCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhc
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAV-HDVNCNVMKMFSD-MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYN 120 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v-~dr~~~~~~~l~~-~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~ 120 (355)
|+||||+|||+|+||.+++..|.++|++|++ |+|++++++.+.+ .+.....+..+.++++|+||+|+|. +.+++++.
T Consensus 21 m~mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDvVilavp~-~~~~~v~~ 99 (220)
T 4huj_A 21 QSMTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRFGASVKAVELKDALQADVVILAVPY-DSIADIVT 99 (220)
T ss_dssp GGSCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHTTTEEECCHHHHTTSSEEEEESCG-GGHHHHHT
T ss_pred hcCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCCCcccChHHHHhcCCEEEEeCCh-HHHHHHHH
Confidence 5578999999999999999999999999999 9999999988765 4666666667778899999999985 68889888
Q ss_pred CCCccccCCCCCCCeEEEEcCCCCH------------HHHHHHHHHHhhchhhhccCCCCCceEEeCCCCC-ChHHHhcC
Q 018506 121 GPNGLLQGGNSVRPQLLIDSSTIDP------------QTSRNISAAVSNCILKEKKDSWENPVMLDAPVSG-GVLAAEAG 187 (355)
Q Consensus 121 ~~~~~l~~~~~~~~~ivi~~st~~~------------~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g-~~~~~~~g 187 (355)
.+.+ + ++++|+++++..+ ...+.+.+.++...+.. .+....+++.. ++.....+
T Consensus 100 ~l~~-~------~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~~~~vv~------~~~~~~~~v~~~g~~~~~~~ 166 (220)
T 4huj_A 100 QVSD-W------GGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSELVPGAKVVK------AFNTLPAAVLAADPDKGTGS 166 (220)
T ss_dssp TCSC-C------TTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHHHSTTCEEEE------ESCSSCHHHHTSCSBCSSCE
T ss_pred Hhhc-c------CCCEEEEcCCCCCcccccccccCCCcHHHHHHHHCCCCCEEE------CCCCCCHHHhhhCcccCCCC
Confidence 7644 2 3569999987663 14456666654211000 01111112222 11111122
Q ss_pred ceEEEecCCHHHHHHHHHHHHHcCCCeEEeCCcchHHHH
Q 018506 188 TLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAA 226 (355)
Q Consensus 188 ~~~~~~gg~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~ 226 (355)
...++.|.++++.+.++++++.+|.+++++|+++.+.++
T Consensus 167 ~~v~~~g~~~~~~~~v~~l~~~~G~~~~~~G~l~~a~~~ 205 (220)
T 4huj_A 167 RVLFLSGNHSDANRQVAELISSLGFAPVDLGTLAASGPI 205 (220)
T ss_dssp EEEEEEESCHHHHHHHHHHHHHTTCEEEECCSHHHHHHH
T ss_pred eeEEEeCCCHHHHHHHHHHHHHhCCCeEeeCChhhcchh
Confidence 335556678899999999999999999999998887665
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-18 Score=152.21 Aligned_cols=173 Identities=16% Similarity=0.247 Sum_probs=132.8
Q ss_pred ceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC-C-------CCCCCCHHHHhhcCCEEEEeCCCchHHH
Q 018506 46 ESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-G-------VPTKETPFEVAEASDVVITMLPSSSHVL 116 (355)
Q Consensus 46 mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~-g-------~~~~~s~~e~~~~aDiVi~~v~~~~~~~ 116 (355)
|||+||| +|.||..++..|.++|++|++|+|++++.+.+.+. + +. .+++.++++++|+||+++|. ..++
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~Vi~~~~~-~~~~ 78 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASIT-GMKNEDAAEACDIAVLTIPW-EHAI 78 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEE-EEEHHHHHHHCSEEEECSCH-HHHH
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccccCCCC-hhhHHHHHhcCCEEEEeCCh-hhHH
Confidence 6899999 99999999999999999999999999988776542 2 23 35777888999999999995 5677
Q ss_pred HHhcCCCccccCCCCCCCeEEEEcCCCCH------------HHHHHHHHHHhhchhhhccCCCCCceEEeC--CCCCChH
Q 018506 117 DVYNGPNGLLQGGNSVRPQLLIDSSTIDP------------QTSRNISAAVSNCILKEKKDSWENPVMLDA--PVSGGVL 182 (355)
Q Consensus 117 ~vl~~~~~~l~~~~~~~~~ivi~~st~~~------------~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~--pv~g~~~ 182 (355)
+++..+.+.+ ++++++++++... ...+++.+.++. ..++.+ |+.+...
T Consensus 79 ~~~~~l~~~~------~~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~~------------~~~v~~~~~~~~~~~ 140 (212)
T 1jay_A 79 DTARDLKNIL------REKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLES------------EKVVSALHTIPAARF 140 (212)
T ss_dssp HHHHHTHHHH------TTSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTC------------SCEEECCTTCCHHHH
T ss_pred HHHHHHHHHc------CCCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCCC------------CeEEEEccchHHHHh
Confidence 8776543333 2568999988433 225666666531 345554 5543333
Q ss_pred HH--hcCceEEEecCC-HHHHHHHHHHHHHc-CCCeEEeCCcchHHHHHHHHHHHHHHHH
Q 018506 183 AA--EAGTLTFMVGGS-EDAYQAAKPLFLSM-GKNTIYCGGAGNGAAAKICNNLTMAVSM 238 (355)
Q Consensus 183 ~~--~~g~~~~~~gg~-~~~~~~v~~ll~~~-g~~~~~~g~~g~a~~~Kl~~n~~~~~~~ 238 (355)
.. ..+.++++++|+ ++..+.++++|+.+ |.+++++++.+.+.++|++.|.+.....
T Consensus 141 ~~~~~~~~~~~~~~g~~~~~~~~v~~l~~~~~G~~~~~~~~~~~a~~~k~~~~~~~~~~~ 200 (212)
T 1jay_A 141 ANLDEKFDWDVPVCGDDDESKKVVMSLISEIDGLRPLDAGPLSNSRLVESLTPLILNIMR 200 (212)
T ss_dssp HCTTCCCCEEEEEEESCHHHHHHHHHHHHHSTTEEEEEEESGGGHHHHHTHHHHHHHHHH
T ss_pred hCcCCCCCccEEEECCcHHHHHHHHHHHHHcCCCCceeccchhHHHHhcchHHHHHHHHH
Confidence 32 456677888775 89999999999999 9999999999999999999998776543
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.77 E-value=3.5e-18 Score=157.09 Aligned_cols=196 Identities=16% Similarity=0.188 Sum_probs=138.3
Q ss_pred ccccccccCCCCCCCCCceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEE
Q 018506 29 SSAMRRFFSSQVPSCQFESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 107 (355)
Q Consensus 29 ~~~~~~~~~~~~~~~~~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~ 107 (355)
++.++.|....+ .++||+||| +|+||.+++..|.++|++|++|||+++. ++.++++++|+||+
T Consensus 8 ~~~~~~~~~~~~---~~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~~-------------~~~~~~~~aDvVil 71 (298)
T 2pv7_A 8 NENQFGFKTINS---DIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA-------------VAESILANADVVIV 71 (298)
T ss_dssp -----CCCCSCT---TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG-------------GHHHHHTTCSEEEE
T ss_pred hhhccCccccCC---CCCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCccc-------------CHHHHhcCCCEEEE
Confidence 445567754422 346899999 9999999999999999999999998752 56788899999999
Q ss_pred eCCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcC
Q 018506 108 MLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAG 187 (355)
Q Consensus 108 ~v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g 187 (355)
|||.. .+.+++..+.+.++ ++++|+|++++.....+.+.+.++ . ..+...|++|+......+
T Consensus 72 avp~~-~~~~vl~~l~~~l~-----~~~iv~~~~svk~~~~~~~~~~~~--------~----~~v~~hP~~g~~~~~~~g 133 (298)
T 2pv7_A 72 SVPIN-LTLETIERLKPYLT-----ENMLLADLTSVKREPLAKMLEVHT--------G----AVLGLHPMFGADIASMAK 133 (298)
T ss_dssp CSCGG-GHHHHHHHHGGGCC-----TTSEEEECCSCCHHHHHHHHHHCS--------S----EEEEEEECSCTTCSCCTT
T ss_pred eCCHH-HHHHHHHHHHhhcC-----CCcEEEECCCCCcHHHHHHHHhcC--------C----CEEeeCCCCCCCchhhcC
Confidence 99975 68888876554442 457999999988765555544321 0 234446877765444456
Q ss_pred ceEEEecC-CHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 018506 188 TLTFMVGG-SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKIL 262 (355)
Q Consensus 188 ~~~~~~gg-~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~ 262 (355)
..++++.+ +++..+.++++|+.+|.+++++++.....+++++.+......+ .+.|++. +.|++.++..++.
T Consensus 134 ~~~~l~~~~~~~~~~~v~~l~~~~G~~~~~~~~~~~d~~~a~~~~~p~~~a~-~l~~~l~---~~g~~~~~~~~la 205 (298)
T 2pv7_A 134 QVVVRCDGRFPERYEWLLEQIQIWGAKIYQTNATEHDHNMTYIQALRHFSTF-ANGLHLS---KQPINLANLLALS 205 (298)
T ss_dssp CEEEEEEEECGGGTHHHHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHHHH-HHHHHHT---TSSCCHHHHHHTC
T ss_pred CeEEEecCCCHHHHHHHHHHHHHcCCEEEECCHHHHHHHHHHHHHHHHHHHH-HHHHHHH---hcCCCHHHHHhhc
Confidence 65666544 6888999999999999988888887778888888887655432 2334432 3777766555443
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.7e-18 Score=159.86 Aligned_cols=175 Identities=13% Similarity=0.120 Sum_probs=136.6
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhc----CCEEEEeCCCchHHHHHh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEA----SDVVITMLPSSSHVLDVY 119 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~----aDiVi~~v~~~~~~~~vl 119 (355)
..+||+|||+|.||.+|+..|.++|++|++|||++++++.+.+.|+..+.++.+++++ +|+||+|+|. ..+.+++
T Consensus 7 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~~~G~~~~~~~~e~~~~a~~~aDlVilavP~-~~~~~vl 85 (341)
T 3ktd_A 7 ISRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDVSADLEATLQRAAAEDALIVLAVPM-TAIDSLL 85 (341)
T ss_dssp CSSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHTTCCEESCHHHHHHHHHHTTCEEEECSCH-HHHHHHH
T ss_pred CCCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeeeCCHHHHHHhcccCCCEEEEeCCH-HHHHHHH
Confidence 4578999999999999999999999999999999999999888888877888887754 7999999995 5788888
Q ss_pred cCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEe-CCCCCChH-H-------HhcCceE
Q 018506 120 NGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGVL-A-------AEAGTLT 190 (355)
Q Consensus 120 ~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~-~pv~g~~~-~-------~~~g~~~ 190 (355)
..+.+. .++.+|+|++++++...+.+.+.+. +..|+. +|+.|+.. . ...+...
T Consensus 86 ~~l~~~------~~~~iv~Dv~Svk~~i~~~~~~~~~------------~~~~v~~HPmaG~e~sG~~aa~~~Lf~g~~~ 147 (341)
T 3ktd_A 86 DAVHTH------APNNGFTDVVSVKTAVYDAVKARNM------------QHRYVGSHPMAGTANSGWSASMDGLFKRAVW 147 (341)
T ss_dssp HHHHHH------CTTCCEEECCSCSHHHHHHHHHTTC------------GGGEECEEECCSCC-CCGGGCCSSTTTTCEE
T ss_pred HHHHcc------CCCCEEEEcCCCChHHHHHHHHhCC------------CCcEecCCccccccccchhhhhhHHhcCCeE
Confidence 665432 1457999999999876666655431 134555 78887541 1 1245567
Q ss_pred EEecC---CHH--------HHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHH
Q 018506 191 FMVGG---SED--------AYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVS 237 (355)
Q Consensus 191 ~~~gg---~~~--------~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~ 237 (355)
+++.+ +++ .++.++++++.+|.+++++++......+.++..+...+.
T Consensus 148 iltp~~~~~~e~~~~~~~~~~~~v~~l~~~~Ga~v~~~~~~~HD~~~A~vshlPh~ia 205 (341)
T 3ktd_A 148 VVTFDQLFDGTDINSTWISIWKDVVQMALAVGAEVVPSRVGPHDAAAARVSHLTHILA 205 (341)
T ss_dssp EECCGGGTSSCCCCHHHHHHHHHHHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHHH
T ss_pred EEEeCCCCChhhhccchHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHhHHHHHHH
Confidence 77754 456 889999999999999999998778888888877765443
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.6e-19 Score=165.80 Aligned_cols=259 Identities=14% Similarity=0.107 Sum_probs=166.0
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCC---CCCCHHHHh-hcCCEEEEeCCCchHHHHHhc
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP---TKETPFEVA-EASDVVITMLPSSSHVLDVYN 120 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~---~~~s~~e~~-~~aDiVi~~v~~~~~~~~vl~ 120 (355)
+|||+|||+|.||+.++..|.++|++|++|+|+++.++.....|.. ...++.+.+ +.+|+||+|+|. .++++++.
T Consensus 2 ~mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~D~vilavk~-~~~~~~l~ 80 (294)
T 3g17_A 2 SLSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITYYTVPHAPAQDIVVKGYEDVTNTFDVIIIAVKT-HQLDAVIP 80 (294)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCEEEEEESSTTSCCEEEEEEEGGGCCSCEEEEEECSCG-GGHHHHGG
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeccCcEEEEecCCeeccceecCchHhcCCCCCEEEEeCCc-cCHHHHHH
Confidence 4899999999999999999999999999999997654432223321 122444544 789999999996 48889888
Q ss_pred CCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecCCHHHH
Q 018506 121 GPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAY 200 (355)
Q Consensus 121 ~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg~~~~~ 200 (355)
.+.+.+. ++++||.+.++...... ++...+. . +..+..+-..++. ....+...+.. ++.+..
T Consensus 81 ~l~~~l~-----~~~~iv~~~nGi~~~~~-----~~~~~v~--~----g~~~~~a~~~~pg-~v~~~~~~~~~-~~~~~~ 142 (294)
T 3g17_A 81 HLTYLAH-----EDTLIILAQNGYGQLEH-----IPFKNVC--Q----AVVYISGQKKGDV-VTHFRDYQLRI-QDNALT 142 (294)
T ss_dssp GHHHHEE-----EEEEEEECCSSCCCGGG-----CCCSCEE--E----CEEEEEEEEETTE-EEEEEEEEEEE-ECSHHH
T ss_pred HHHHhhC-----CCCEEEEeccCcccHhh-----CCCCcEE--E----EEEEEEEEEcCCC-EEEECCCEEec-CccHHH
Confidence 7766653 34577777776533211 2221100 0 1111111111110 00111112222 455677
Q ss_pred HHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHcCCC--HHHH
Q 018506 201 QAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA--------------------VSMLGVSEALTLGQSLGIS--ASTL 258 (355)
Q Consensus 201 ~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~--------------------~~~~~~~Ea~~la~~~Gi~--~~~~ 258 (355)
+.+.++|+.-+.++.+..++-...|.|++.|...+ .+..++.|+.+++++.|++ .+.+
T Consensus 143 ~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~inl~al~~~~~g~~l~~~~~~~l~~~~~~E~~~va~a~G~~l~~~~~ 222 (294)
T 3g17_A 143 RQFRDLVQDSQIDIVLEANIQQAIWYKLLVNLGINSITALGRQTVAIMHNPEIRILCRQLLLDGCRVAQAEGLNFSEQTV 222 (294)
T ss_dssp HHHHHHTTTSSCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTSCGGGGGSHHHHHHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHhCCCceEEChHHHHHHHHHHHHHHHHHHHHHHCCChHHHHcCHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 88999999888888888899999999999998433 2456778999999999975 4444
Q ss_pred HHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHC
Q 018506 259 TKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCEN 334 (355)
Q Consensus 259 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~ 334 (355)
.+.+........ ...-++..++..|++.+-++. .+++++.++++|+++|+++.++++++..++.
T Consensus 223 ~~~~~~~~~~~~-~~~sSM~qD~~~gr~tEid~i-----------~G~vv~~a~~~gv~~P~~~~l~~ll~~~e~~ 286 (294)
T 3g17_A 223 DTIMTIYQGYPD-EMGTSMYYDIVHQQPLEVEAI-----------QGFIYRRAREHNLDTPYLDTIYSFLRAYQQN 286 (294)
T ss_dssp HHHHHHHHTSCT-TCCCHHHHHHHTTCCCSGGGT-----------HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCC-CCCCcHHHHHHcCCCccHHHh-----------hhHHHHHHHHhCCCCChHHHHHHHHHHHHhc
Confidence 444432111000 000112233444555555554 3489999999999999999999999877765
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-18 Score=177.75 Aligned_cols=189 Identities=19% Similarity=0.233 Sum_probs=130.8
Q ss_pred CCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHH-----------HhCC-------------CCCCCCHHH
Q 018506 42 SCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMF-----------SDMG-------------VPTKETPFE 97 (355)
Q Consensus 42 ~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l-----------~~~g-------------~~~~~s~~e 97 (355)
....+||+|||+|.||.+||..|+++||+|++||+++++++.. .+.| +..++++ +
T Consensus 311 ~~~i~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~ 389 (715)
T 1wdk_A 311 AKDVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-G 389 (715)
T ss_dssp CCCCSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-T
T ss_pred cccCCEEEEECCChhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCH-H
Confidence 3457899999999999999999999999999999999987653 2233 2345566 6
Q ss_pred HhhcCCEEEEeCCCchHHHH-HhcCCCccccCCCCCCCeEEEE-cCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeC
Q 018506 98 VAEASDVVITMLPSSSHVLD-VYNGPNGLLQGGNSVRPQLLID-SSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 175 (355)
Q Consensus 98 ~~~~aDiVi~~v~~~~~~~~-vl~~~~~~l~~~~~~~~~ivi~-~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~ 175 (355)
++++||+||+|||++.+++. ++.++.+.++ +++++++ +|+.++. .+.+.+.. ...+.+.||++
T Consensus 390 ~~~~aDlVIeaV~e~~~vk~~v~~~l~~~~~-----~~~IlasntStl~i~---~la~~~~~------~~~~ig~hf~~- 454 (715)
T 1wdk_A 390 DFGNVDLVVEAVVENPKVKQAVLAEVENHVR-----EDAILASNTSTISIS---LLAKALKR------PENFVGMHFFN- 454 (715)
T ss_dssp TGGGCSEEEECCCSCHHHHHHHHHHHHTTSC-----TTCEEEECCSSSCHH---HHGGGCSC------GGGEEEEECCS-
T ss_pred HHCCCCEEEEcCCCCHHHHHHHHHHHHhhCC-----CCeEEEeCCCCCCHH---HHHHHhcC------ccceEEEEccC-
Confidence 78899999999998876654 4444333332 4567664 4555443 23332211 00112367776
Q ss_pred CCCCChHHHhcCceE-EEecC--CHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 018506 176 PVSGGVLAAEAGTLT-FMVGG--SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLG 252 (355)
Q Consensus 176 pv~g~~~~~~~g~~~-~~~gg--~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~G 252 (355)
|+.. ..+. ++.|. ++++++.+.++++.+|+.++++++. .+. ++|+++. ..++|++.++++ |
T Consensus 455 P~~~-------~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~v~v~d~-~Gf---i~Nril~----~~~~Ea~~l~~~-G 518 (715)
T 1wdk_A 455 PVHM-------MPLVEVIRGEKSSDLAVATTVAYAKKMGKNPIVVNDC-PGF---LVNRVLF----PYFGGFAKLVSA-G 518 (715)
T ss_dssp STTT-------CCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEEESC-TTT---THHHHHH----HHHHHHHHHHHT-T
T ss_pred Cccc-------CceEEEEECCCCCHHHHHHHHHHHHHhCCEeEEEcCC-CCh---hhhHHHH----HHHHHHHHHHHC-C
Confidence 3321 2233 34443 8999999999999999999999873 222 3444443 357899999997 9
Q ss_pred CCHHHHHHHH
Q 018506 253 ISASTLTKIL 262 (355)
Q Consensus 253 i~~~~~~~~~ 262 (355)
++++++.+++
T Consensus 519 ~~~~~id~~~ 528 (715)
T 1wdk_A 519 VDFVRIDKVM 528 (715)
T ss_dssp CCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9999999998
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.75 E-value=6e-18 Score=172.45 Aligned_cols=252 Identities=15% Similarity=0.140 Sum_probs=145.3
Q ss_pred CCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh-----------CC-------------CCCCCCHHH
Q 018506 42 SCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----------MG-------------VPTKETPFE 97 (355)
Q Consensus 42 ~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~-----------~g-------------~~~~~s~~e 97 (355)
...++||+|||+|.||+.||..|+++||+|++||+++++++...+ .| +..++++ +
T Consensus 309 ~~~~~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~ 387 (725)
T 2wtb_A 309 PRKIKKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDY-E 387 (725)
T ss_dssp CCCCCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSS-G
T ss_pred cccCcEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCH-H
Confidence 345689999999999999999999999999999999998765421 22 2234566 5
Q ss_pred HhhcCCEEEEeCCCchHHHH-HhcCCCccccCCCCCCCeEEEE-cCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeC
Q 018506 98 VAEASDVVITMLPSSSHVLD-VYNGPNGLLQGGNSVRPQLLID-SSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 175 (355)
Q Consensus 98 ~~~~aDiVi~~v~~~~~~~~-vl~~~~~~l~~~~~~~~~ivi~-~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~ 175 (355)
++++||+||+|||++..++. ++.++.+.++ ++.++++ +|+.++.+ +.+.+. ....+.+.||++
T Consensus 388 ~~~~aDlVIeaVpe~~~vk~~v~~~l~~~~~-----~~~IlasntStl~i~~---la~~~~------~p~~~iG~hf~~- 452 (725)
T 2wtb_A 388 SFRDVDMVIEAVIENISLKQQIFADLEKYCP-----QHCILASNTSTIDLNK---IGERTK------SQDRIVGAHFFS- 452 (725)
T ss_dssp GGTTCSEEEECCCSCHHHHHHHHHHHHHHSC-----TTCEEEECCSSSCHHH---HTTTCS------CTTTEEEEEECS-
T ss_pred HHCCCCEEEEcCcCCHHHHHHHHHHHHhhCC-----CCcEEEeCCCCCCHHH---HHHHhc------CCCCEEEecCCC-
Confidence 77899999999999876654 4444333432 4456654 45554442 333221 111112367877
Q ss_pred CCCCChHHHhcCceEEEecC---CHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 018506 176 PVSGGVLAAEAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLG 252 (355)
Q Consensus 176 pv~g~~~~~~~g~~~~~~gg---~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~G 252 (355)
|+.. ..+..++.| ++++++.+.++++.+|+.++++++. .+. ++|+++. ..++|++.++++ |
T Consensus 453 P~~~-------~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~v~v~d~-~Gf---i~Nril~----~~~~Ea~~l~~~-G 516 (725)
T 2wtb_A 453 PAHI-------MPLLEIVRTNHTSAQVIVDLLDVGKKIKKTPVVVGNC-TGF---AVNRMFF----PYTQAAMFLVEC-G 516 (725)
T ss_dssp STTT-------CCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEEESS-TTT---THHHHHH----HHHHHHHHHHHT-T
T ss_pred Cccc-------CceEEEEECCCCCHHHHHHHHHHHHHhCCEEEEECCC-ccH---HHHHHHH----HHHHHHHHHHHC-C
Confidence 3322 223444443 8999999999999999999999873 222 3444443 347999999988 9
Q ss_pred CCHHHHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 018506 253 ISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLC 332 (355)
Q Consensus 253 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~ 332 (355)
++++++.+++ .+.+.. + .|. .++ |+ .+++...+-...+.+...+.....|+++...+.-..+.
T Consensus 517 ~~~e~id~~~-~~~g~p-~----Gp~-~l~-------D~---vGld~~~~i~~~~~~~~~~~~~~~~~l~~~v~~g~lG~ 579 (725)
T 2wtb_A 517 ADPYLIDRAI-SKFGMP-M----GPF-RLC-------DL---VGFGVAIATATQFIENFSERTYKSMIIPLMQEDKRAGE 579 (725)
T ss_dssp CCHHHHHHHH-HHHTCS-S----CHH-HHH-------HH---HCHHHHHHHHHHHHHHSGGGCCCCTHHHHHHTTC----
T ss_pred CCHHHHHHHH-HHcCCC-C----CHH-HHH-------HH---hchHHHHHHHHHHHHhcCCccCChHHHHHHHHCCCcee
Confidence 9999999999 443211 0 000 000 10 12232222222222221222122267777776667777
Q ss_pred HCCCCCCcHH
Q 018506 333 ENGHDSKDFS 342 (355)
Q Consensus 333 ~~g~g~~d~~ 342 (355)
+.|.|..+|.
T Consensus 580 k~g~GfY~y~ 589 (725)
T 2wtb_A 580 ATRKGFYLYD 589 (725)
T ss_dssp ----------
T ss_pred cCCceeEeCC
Confidence 8888888883
|
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.3e-18 Score=161.02 Aligned_cols=270 Identities=15% Similarity=0.090 Sum_probs=170.0
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC--------cEEEEeCChhH-----HHHHHhC--------------CCCCCCCHH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY--------KMAVHDVNCNV-----MKMFSDM--------------GVPTKETPF 96 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~--------~V~v~dr~~~~-----~~~l~~~--------------g~~~~~s~~ 96 (355)
+..||+|||+|.||++||..|+++|| +|.+|.|+++. .+.++.. ++.+++++.
T Consensus 33 ~p~KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~dl~ 112 (391)
T 4fgw_A 33 KPFKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPDLI 112 (391)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESCHH
T ss_pred CCCeEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCCHH
Confidence 34599999999999999999999876 49999998763 4444432 234567899
Q ss_pred HHhhcCCEEEEeCCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHH-H--HHHHHHHHhhchhhhccCCCCCceEE
Q 018506 97 EVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ-T--SRNISAAVSNCILKEKKDSWENPVML 173 (355)
Q Consensus 97 e~~~~aDiVi~~v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~-~--~~~l~~~~~~~~~~~~~g~~~~~~~~ 173 (355)
++++++|+||+++|. +.+++++..+.+.+. ++..+|.++.+... + .+.+.+.+.+. .+ ..+.++
T Consensus 113 ~al~~ad~ii~avPs-~~~r~~l~~l~~~~~-----~~~~iv~~~KGie~~~~~~~~~se~i~e~-----~~--~~~~vL 179 (391)
T 4fgw_A 113 DSVKDVDIIVFNIPH-QFLPRICSQLKGHVD-----SHVRAISCLKGFEVGAKGVQLLSSYITEE-----LG--IQCGAL 179 (391)
T ss_dssp HHHTTCSEEEECSCG-GGHHHHHHHHTTTSC-----TTCEEEECCCSCEEETTEEECHHHHHHHH-----HC--CEEEEE
T ss_pred HHHhcCCEEEEECCh-hhhHHHHHHhccccC-----CCceeEEeccccccccccchhHHHHHHHH-----hC--ccceec
Confidence 999999999999997 699999988776653 45678888776421 1 12233333321 01 015678
Q ss_pred eCCCCCChHHHhcCceEEEecCCHH---------HHHHHHHHHHHcCCCeEEeCC-c--chHHHHH--------------
Q 018506 174 DAPVSGGVLAAEAGTLTFMVGGSED---------AYQAAKPLFLSMGKNTIYCGG-A--GNGAAAK-------------- 227 (355)
Q Consensus 174 ~~pv~g~~~~~~~g~~~~~~gg~~~---------~~~~v~~ll~~~g~~~~~~g~-~--g~a~~~K-------------- 227 (355)
++|.+.........+.+.+.+.+.+ ..+.++.+|..-..+++...+ . .-+-++|
T Consensus 180 sGPs~A~EVa~~~pta~~iA~~~~~~~~~~~~~~~a~~~~~lf~~~~frvy~s~DviGvElgGAlKNViAIAaGi~dGlg 259 (391)
T 4fgw_A 180 SGANIATEVAQEHWSETTVAYHIPKDFRGEGKDVDHKVLKALFHRPYFHVSVIEDVAGISICGALKNVVALGCGFVEGLG 259 (391)
T ss_dssp ECSCCHHHHHTTCCEEEEEECCCCTTCCCSSSSCCHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCchHHHhhcCCCceEEEEecChhhhhhhhHHHHHHHHHHHhCCCCEEEEEeCCccceehHHHHHHHHHHHHHHHhcCC
Confidence 8998766555555554455443322 346678888765556665554 2 2233444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHc---CCCHHHHHHHHHhcCC--CcccccCCCCCCCccc---CCCCCC---CCCCCcc
Q 018506 228 ICNNLTMAVSMLGVSEALTLGQSL---GISASTLTKILNSSSA--RCWSSDSYNPVPGVME---GVPASR---NYGGGFA 296 (355)
Q Consensus 228 l~~n~~~~~~~~~~~Ea~~la~~~---Gi~~~~~~~~~~~~~~--~s~~~~~~~~~~~~~~---~~~~~~---~~~~~~~ 296 (355)
+..|...+++...++|+.+++.++ |-++.++..+...|+. ++.. .+++..+..- |+..+. +...| .
T Consensus 260 ~G~NakAALitrGl~Em~rlg~al~~~g~~~tt~~glaGlGDLi~Tc~s--SRNr~~G~~lg~~G~~~~~~~~~~~~g-~ 336 (391)
T 4fgw_A 260 WGNNASAAIQRVGLGEIIRFGQMFFPESREETYYQESAGVADLITTCAG--GRNVKVARLMATSGKDAWECEKELLNG-Q 336 (391)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHSTTTHHHHHHHHHS--SHHHHHHHHHHHTCCCHHHHHHHHHTT-C
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcccCCceeecCCCcccceeEEecC--CccHHHHHHHHhcCCCHHHHHHHHhCC-C
Confidence 556888888999999999999998 4444444433232221 1111 2222111110 100000 00001 1
Q ss_pred hhhHHHHHHHHHHHHHHhCC--CChHHHHHHHHHH
Q 018506 297 SKLMAKDLNLALASAKEVGV--DCPLTSQAQDIYA 329 (355)
Q Consensus 297 ~~~~~kd~~~~~~~a~~~gv--~~pi~~~~~~~~~ 329 (355)
+.........+.++++++|+ ++|+++++++++.
T Consensus 337 v~EGv~ta~~v~~l~~~~~v~~emPI~~~vy~IL~ 371 (391)
T 4fgw_A 337 SAQGLITCKEVHEWLETCGSVEDFPLFEAVYQIVY 371 (391)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSTTCHHHHHHHHHHH
T ss_pred EEehHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHh
Confidence 23445566788999999999 8999999999887
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-19 Score=156.53 Aligned_cols=168 Identities=14% Similarity=0.148 Sum_probs=119.0
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPN 123 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~ 123 (355)
..|||+|||+|+||..++..|.+.|++|++|+|+++ .+.+.+.++... ++.++++.+|+||+++|.. ++++++ .+.
T Consensus 18 ~~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~-~~~~~~~~aDvVilav~~~-~~~~v~-~l~ 93 (201)
T 2yjz_A 18 KQGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQ-VSSLLPRGAEVL-CYSEAASRSDVIVLAVHRE-HYDFLA-ELA 93 (201)
Confidence 458999999999999999999999999999999987 555655566655 7888888999999999974 677765 322
Q ss_pred ccccCCCCCCCeEEEEcCCCCHH------HHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCce-EEEecCC
Q 018506 124 GLLQGGNSVRPQLLIDSSTIDPQ------TSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTL-TFMVGGS 196 (355)
Q Consensus 124 ~~l~~~~~~~~~ivi~~st~~~~------~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~-~~~~gg~ 196 (355)
.. .++++||+++++.+. ..+.+.+.++... .. ..+.+.|..........+.. .+++|++
T Consensus 94 ~~------~~~~ivI~~~~G~~~~~~~~~~~~~l~~~~~~~~----vv----ra~~n~~a~~~~~g~l~g~~~~~~~g~~ 159 (201)
T 2yjz_A 94 DS------LKGRVLIDVSNNQKMNQYPESNAEYLAQLVPGAH----VV----KAFNTISAWALQSGTLDASRQVFVCGND 159 (201)
Confidence 11 246799999998873 2233444433110 00 11222222211111111222 5777888
Q ss_pred HHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHH
Q 018506 197 EDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKIC 229 (355)
Q Consensus 197 ~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~ 229 (355)
++.++.++++|+.+|.+++++|+++.+.++|.+
T Consensus 160 ~~~~~~v~~ll~~~G~~~~~~G~l~~a~~~e~~ 192 (201)
T 2yjz_A 160 SKAKDRVMDIARTLGLTPLDQGSLVAAKEIENY 192 (201)
Confidence 899999999999999999999999999999854
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.1e-17 Score=144.61 Aligned_cols=173 Identities=16% Similarity=0.199 Sum_probs=120.2
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
..+|||+|||+|.||..++..|.+.||+|++|+|++++.+.+.+.|+... +..++++++|+||+|+|. ..+++++. +
T Consensus 26 ~~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~-~~~~~~~~~DvVi~av~~-~~~~~v~~-l 102 (215)
T 2vns_A 26 DEAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQVT-FQEEAVSSPEVIFVAVFR-EHYSSLCS-L 102 (215)
T ss_dssp ---CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHSBTTSEEE-EHHHHTTSCSEEEECSCG-GGSGGGGG-G
T ss_pred CCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcee-cHHHHHhCCCEEEECCCh-HHHHHHHH-H
Confidence 35689999999999999999999999999999999999988877676654 788888999999999995 46666653 2
Q ss_pred CccccCCCCCCCeEEEEcCCCCHHHHHH----HHHHHhhchhhhccCCCCCceEEe--CCCCCChHH--HhcCc-eEEEe
Q 018506 123 NGLLQGGNSVRPQLLIDSSTIDPQTSRN----ISAAVSNCILKEKKDSWENPVMLD--APVSGGVLA--AEAGT-LTFMV 193 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~~~~~~~----l~~~~~~~~~~~~~g~~~~~~~~~--~pv~g~~~~--~~~g~-~~~~~ 193 (355)
.+.+ +++++++++++.+..... ..+.+.+. + .+ .+++. .++.+.... ...+. ..++.
T Consensus 103 ~~~~------~~~~vv~~s~g~~~~~l~~~~~~~~~l~~~-l---~~----~~vv~~~n~~~~~~~~~~~~~g~~~~~~~ 168 (215)
T 2vns_A 103 SDQL------AGKILVDVSNPTEQEHLQHRESNAEYLASL-F---PT----CTVVKAFNVISAWTLQAGPRDGNRQVPIC 168 (215)
T ss_dssp HHHH------TTCEEEECCCCCHHHHHHCSSCHHHHHHHH-C---TT----SEEEEECTTBCHHHHHTCSCSSCCEEEEE
T ss_pred HHhc------CCCEEEEeCCCcccccccccccHHHHHHHH-C---CC----CeEEeccccccHhHhcccccCCceeEEEe
Confidence 2222 457999999998654211 11222110 0 00 11111 122111100 11122 36777
Q ss_pred cCCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHH
Q 018506 194 GGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNL 232 (355)
Q Consensus 194 gg~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~ 232 (355)
|++++.++.++++|+.+|.+++++|+.+.|.+++.+.++
T Consensus 169 g~~~~~~~~v~~ll~~~G~~~~~~g~~~~~~~~e~~~~~ 207 (215)
T 2vns_A 169 GDQPEAKRAVSEMALAMGFMPVDMGSLASAWEVEAMPLR 207 (215)
T ss_dssp ESCHHHHHHHHHHHHHTTCEEEECCSGGGHHHHHHSCCB
T ss_pred cCCHHHHHHHHHHHHHcCCceEeecchhhhhHhhhhhhh
Confidence 889999999999999999999999999999998754443
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.73 E-value=4.5e-18 Score=154.65 Aligned_cols=190 Identities=16% Similarity=0.183 Sum_probs=128.4
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcE-EEEeCChhHHHHHHh-CCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKM-AVHDVNCNVMKMFSD-MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V-~v~dr~~~~~~~l~~-~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
+|||+|||+|+||.+|+..|.++ ++| .+|||++++.+.+.+ .+. .+.+++++++++|+||+|+|+. .+++++..+
T Consensus 2 ~m~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~DvVilav~~~-~~~~v~~~l 78 (276)
T 2i76_A 2 SLVLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEVYGG-KAATLEKHPELNGVVFVIVPDR-YIKTVANHL 78 (276)
T ss_dssp --CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCC-CCCSSCCCCC---CEEECSCTT-THHHHHTTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHHcCC-ccCCHHHHHhcCCEEEEeCChH-HHHHHHHHh
Confidence 47999999999999999999998 999 599999999988864 466 6677888888999999999986 578887664
Q ss_pred CccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHh-cCceEEEecCCHHHHH
Q 018506 123 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAE-AGTLTFMVGGSEDAYQ 201 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~-~g~~~~~~gg~~~~~~ 201 (355)
. .++++|+++++..+... +.+. .. +..++..++.+++.... .....++++++++.++
T Consensus 79 ~--------~~~~ivi~~s~~~~~~~--l~~~--------~~----~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 136 (276)
T 2i76_A 79 N--------LGDAVLVHCSGFLSSEI--FKKS--------GR----ASIHPNFSFSSLEKALEMKDQIVFGLEGDERGLP 136 (276)
T ss_dssp C--------CSSCCEEECCSSSCGGG--GCSS--------SE----EEEEECSCC--CTTGGGCGGGCCEEECCCTTTHH
T ss_pred c--------cCCCEEEECCCCCcHHH--HHHh--------hc----cccchhhhcCCCchhHHHhCCCeEEEEeChHHHH
Confidence 3 14568999987765532 1111 00 12344556666444333 3444567777888899
Q ss_pred HHHHHHHHcCCCeEEeCCcch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH--HHHHHHH
Q 018506 202 AAKPLFLSMGKNTIYCGGAGN---GAAAKICNNLTMAVSMLGVSEALTLGQSLGISAS--TLTKILN 263 (355)
Q Consensus 202 ~v~~ll~~~g~~~~~~g~~g~---a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~--~~~~~~~ 263 (355)
.++++++.+|.+++++++... ....+++.|.+.. .+.|+..++.+.|++.+ .+.+++.
T Consensus 137 ~~~~l~~~lG~~~~~v~~~~~~~~~~~~~l~~n~~~~----~~~~a~~~~~~~Gl~~~~a~~~~l~~ 199 (276)
T 2i76_A 137 IVKKIAEEISGKYFVIPSEKKKAYHLAAVIASNFPVA----LAYLSKRIYTLLGLDEPELLIHTLMK 199 (276)
T ss_dssp HHHHHHHHHCSCEEECCGGGHHHHHHHHHHHHTTHHH----HHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCEEEECHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 999999999988999986432 2344677775543 45788889999999987 4444443
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=99.72 E-value=4.6e-17 Score=148.94 Aligned_cols=162 Identities=17% Similarity=0.231 Sum_probs=120.1
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHC--CCcEEEEeCChhHHHHHHhCCCC--CCCCHHHHhhcCCEEEEeCCCchHHHHH
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKA--GYKMAVHDVNCNVMKMFSDMGVP--TKETPFEVAEASDVVITMLPSSSHVLDV 118 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~--G~~V~v~dr~~~~~~~l~~~g~~--~~~s~~e~~~~aDiVi~~v~~~~~~~~v 118 (355)
|++|||+|||+|+||.+++..|.++ |++|++|||++++.+.+.+.|.. .+.++.++++++|+||+|+|.. .++++
T Consensus 4 M~~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilavp~~-~~~~v 82 (290)
T 3b1f_A 4 MEEKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILAVPIK-KTIDF 82 (290)
T ss_dssp GCCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECSCHH-HHHHH
T ss_pred cccceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcCCHH-HHHHH
Confidence 4568999999999999999999988 67999999999999888877763 4567888889999999999965 66787
Q ss_pred hcCCCcc-ccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEe-CCCCC----ChHHHh----cCc
Q 018506 119 YNGPNGL-LQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSG----GVLAAE----AGT 188 (355)
Q Consensus 119 l~~~~~~-l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~-~pv~g----~~~~~~----~g~ 188 (355)
+..+.+. +. ++++|++++++.+...+.+.+.++. . +.+++. .|++| ++..+. .+.
T Consensus 83 ~~~l~~~~l~-----~~~ivi~~~~~~~~~~~~l~~~l~~-----~-----~~~~v~~~P~~g~~~~g~~~a~~~l~~g~ 147 (290)
T 3b1f_A 83 IKILADLDLK-----EDVIITDAGSTKYEIVRAAEYYLKD-----K-----PVQFVGSHPMAGSHKSGAVAANVNLFENA 147 (290)
T ss_dssp HHHHHTSCCC-----TTCEEECCCSCHHHHHHHHHHHHTT-----S-----SCEEEEEEEC-----CCTTSCCTTTTTTS
T ss_pred HHHHHhcCCC-----CCCEEEECCCCchHHHHHHHHhccc-----c-----CCEEEEeCCcCCCCcchHHHhhHHHhCCC
Confidence 7654433 32 4579999988887666667666542 0 144444 67754 232222 455
Q ss_pred eEEEe---cCCHHHHHHHHHHHHHcCCCeEEeCCc
Q 018506 189 LTFMV---GGSEDAYQAAKPLFLSMGKNTIYCGGA 220 (355)
Q Consensus 189 ~~~~~---gg~~~~~~~v~~ll~~~g~~~~~~g~~ 220 (355)
.++++ +++++..+.++++|+.+|.+++++++.
T Consensus 148 ~~~~~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~~ 182 (290)
T 3b1f_A 148 YYIFSPSCLTKPNTIPALQDLLSGLHARYVEIDAA 182 (290)
T ss_dssp EEEEEECTTCCTTHHHHHHHHTGGGCCEEEECCHH
T ss_pred eEEEecCCCCCHHHHHHHHHHHHHcCCEEEEcCHH
Confidence 44444 467889999999999999988888763
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.72 E-value=9e-19 Score=161.67 Aligned_cols=259 Identities=11% Similarity=0.017 Sum_probs=155.3
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCC----------HHHHhhcCCEEEEeCCCchH
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKET----------PFEVAEASDVVITMLPSSSH 114 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s----------~~e~~~~aDiVi~~v~~~~~ 114 (355)
+|||+|||+|.||+.++..|+ +|++|++|+|++++++.+++.|.....+ ..+....+|+||+|+|. .+
T Consensus 2 ~mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~-~~ 79 (307)
T 3ego_A 2 SLKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQEQAAAIQSEGIRLYKGGEEFRADCSADTSINSDFDLLVVTVKQ-HQ 79 (307)
T ss_dssp CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCEEESSCCSCCSEEEECCCG-GG
T ss_pred CCEEEEECCCHHHHHHHHHHh-cCCceEEEECCHHHHHHHHhCCceEecCCCeecccccccccccCCCCEEEEEeCH-HH
Confidence 489999999999999999999 9999999999999888888766433211 12345689999999996 48
Q ss_pred HHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEec
Q 018506 115 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVG 194 (355)
Q Consensus 115 ~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~g 194 (355)
+++++..+.++ .+++ ||.+.++.... +.+.+.++...+. .|..........| |.......+. +.+|
T Consensus 80 ~~~~l~~l~~~------~~~~-ivs~~nGi~~~-e~l~~~~~~~~vl--~g~~~~~a~~~~p--g~v~~~~~g~--~~iG 145 (307)
T 3ego_A 80 LQSVFSSLERI------GKTN-ILFLQNGMGHI-HDLKDWHVGHSIY--VGIVEHGAVRKSD--TAVDHTGLGA--IKWS 145 (307)
T ss_dssp HHHHHHHTTSS------CCCE-EEECCSSSHHH-HHHHTCCCSCEEE--EEEECCEEEECSS--SEEEEEECCC--EEEE
T ss_pred HHHHHHHhhcC------CCCe-EEEecCCccHH-HHHHHhCCCCcEE--EEEEeeceEECCC--CEEEEeeeee--EEEE
Confidence 88888765443 1345 77777766532 3344433321100 0000000011111 1111122233 2233
Q ss_pred ---CCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHH
Q 018506 195 ---GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAV---------------------SMLGVSEALTLGQS 250 (355)
Q Consensus 195 ---g~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~---------------------~~~~~~Ea~~la~~ 250 (355)
+..+.++.+.++|+..+.++.+..++-...|.|++.|...+. +..++.|+..++.+
T Consensus 146 ~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~l~~~l~~E~~~va~~ 225 (307)
T 3ego_A 146 AFDDAEPDRLNILFQHNHSDFPIYYETDWYRLLTGKLIVNACINPLTALLQVKNGELLTTPAYLAFMKLVFQEACRILKL 225 (307)
T ss_dssp ECTTCCGGGGTTTTSSCCTTSCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCTTHHHHSHHHHHHHHHHHHHHHHHHTC
T ss_pred eCCCCcHHHHHHHHHhhhCCCCcEechhHHHHHHHHHHHhhhhhHHHHHhcCCcchhhcChhHHHHHHHHHHHHHHHHhc
Confidence 223344555555666677777888899999999999986542 34567788888765
Q ss_pred cCCCHHHHHHHHHhcC-CCcccccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 018506 251 LGISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYA 329 (355)
Q Consensus 251 ~Gi~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~ 329 (355)
. +++.+.+.+.... .... ..-++..++..|++.+-|+. .+++++.++++|+++|+++.++++++
T Consensus 226 ~--~~~~~~~~~~~~~~~~~~--~~sSM~qD~~~gr~tEid~i-----------~G~vv~~a~~~gv~tP~~~~l~~li~ 290 (307)
T 3ego_A 226 E--NEEKAWERVQAVCGQTKE--NRSSMLVDVIGGRQTEADAI-----------IGYLLKEASLQGLDAVHLEFLYGSIK 290 (307)
T ss_dssp S--CHHHHHHHHHHHHHHTTT--CCCHHHHHHHHTCCCSHHHH-----------HHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred c--ChHHHHHHHHHHHHhcCC--CCchHHHHHHcCCcccHHHh-----------hhHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 4 2444433332110 0000 00011222333433333332 35899999999999999999999998
Q ss_pred HHHHC
Q 018506 330 KLCEN 334 (355)
Q Consensus 330 ~~~~~ 334 (355)
..++.
T Consensus 291 ~~e~~ 295 (307)
T 3ego_A 291 ALERN 295 (307)
T ss_dssp HTC--
T ss_pred HHHhh
Confidence 76554
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=99.72 E-value=9.9e-18 Score=146.07 Aligned_cols=157 Identities=15% Similarity=0.174 Sum_probs=112.1
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
..+|||+|||+|.||++++..|.++|++|++|||+++ +++++|+||+|+| +.++++++..+
T Consensus 17 ~~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~------------------~~~~aD~vi~av~-~~~~~~v~~~l 77 (209)
T 2raf_A 17 FQGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ------------------ATTLGEIVIMAVP-YPALAALAKQY 77 (209)
T ss_dssp ---CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC------------------CSSCCSEEEECSC-HHHHHHHHHHT
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH------------------HhccCCEEEEcCC-cHHHHHHHHHH
Confidence 3568999999999999999999999999999999865 4568999999999 56888888765
Q ss_pred CccccCCCCCCCeEEEEcCCCCH--H-------H----HHHHHHHHhhchhhhccCCCCCceEEe------CCCCCChHH
Q 018506 123 NGLLQGGNSVRPQLLIDSSTIDP--Q-------T----SRNISAAVSNCILKEKKDSWENPVMLD------APVSGGVLA 183 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~~--~-------~----~~~l~~~~~~~~~~~~~g~~~~~~~~~------~pv~g~~~~ 183 (355)
.+.+ ++++++++++..+ . . .+.+.+.++. ..++. +|.++....
T Consensus 78 ~~~~------~~~~vi~~~~g~~~~~~~~l~~~~~~~~~~~l~~~l~~------------~~vv~~~~~~~~p~~~~~~~ 139 (209)
T 2raf_A 78 ATQL------KGKIVVDITNPLNFDTWDDLVVPADSSAAQELQQQLPD------------SQVLKAFNTTFAATLQSGQV 139 (209)
T ss_dssp HHHH------TTSEEEECCCCBCTTTSSSBSSCTTCCHHHHHHHHCTT------------SEEEECSTTSCHHHHHHSEE
T ss_pred HHhc------CCCEEEEECCCCCccccccccCCCCCcHHHHHHHHCCC------------CcEEEeeecccHhhcccccc
Confidence 4443 2569999988543 1 1 3444444321 34444 232211111
Q ss_pred HhcCceEEEecC-CHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHH
Q 018506 184 AEAGTLTFMVGG-SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAV 236 (355)
Q Consensus 184 ~~~g~~~~~~gg-~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~ 236 (355)
...+...+++++ +++..+.++++|+.+|.+++++++++.+.++|++.|++...
T Consensus 140 ~g~~~~~~~~~g~~~~~~~~v~~ll~~~G~~~~~~~~i~~a~~~K~i~~l~~~~ 193 (209)
T 2raf_A 140 NGKEPTTVLVAGNDDSAKQRFTRALADSPLEVKDAGKLKRARELEAMGFMQMTL 193 (209)
T ss_dssp TTTEECEEEEEESCHHHHHHHHHHTTTSSCEEEEEESGGGHHHHHHHHHHHHHH
T ss_pred CCCCCceeEEcCCCHHHHHHHHHHHHHcCCceEeCCCHhHHHHhcchHHHHHHH
Confidence 111233445554 57899999999999999999999999999999998886443
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.69 E-value=2e-16 Score=153.80 Aligned_cols=191 Identities=16% Similarity=0.220 Sum_probs=129.0
Q ss_pred CCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh-----------CC-----------CCCCCCHHHHh
Q 018506 42 SCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----------MG-----------VPTKETPFEVA 99 (355)
Q Consensus 42 ~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~-----------~g-----------~~~~~s~~e~~ 99 (355)
.+.++||+|||+|.||..||..|+++||+|++||+++++++...+ .| ...++++ +.+
T Consensus 34 ~~~~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~~ 112 (463)
T 1zcj_A 34 AQPVSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-KEL 112 (463)
T ss_dssp CCCCCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCG-GGG
T ss_pred cCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCH-HHH
Confidence 345789999999999999999999999999999999987765432 11 1234566 567
Q ss_pred hcCCEEEEeCCCchHHH-HHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCC
Q 018506 100 EASDVVITMLPSSSHVL-DVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVS 178 (355)
Q Consensus 100 ~~aDiVi~~v~~~~~~~-~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~ 178 (355)
++||+||+|+|+..+++ +++..+.+.+. ++++|++ +|..+... .+.+.+.. ...+.+.||+ .|+.
T Consensus 113 ~~aDlVIeaVpe~~~~k~~v~~~l~~~~~-----~~~ii~s-nTs~~~~~-~la~~~~~------~~~~ig~hf~-~P~~ 178 (463)
T 1zcj_A 113 STVDLVVEAVFEDMNLKKKVFAELSALCK-----PGAFLCT-NTSALNVD-DIASSTDR------PQLVIGTHFF-SPAH 178 (463)
T ss_dssp TTCSEEEECCCSCHHHHHHHHHHHHHHSC-----TTCEEEE-CCSSSCHH-HHHTTSSC------GGGEEEEEEC-SSTT
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHhhCC-----CCeEEEe-CCCCcCHH-HHHHHhcC------CcceEEeecC-CCcc
Confidence 89999999999875544 45544433432 4567765 44444332 45443321 1111136776 4432
Q ss_pred CChHHHhcCceE-EEec--CCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 018506 179 GGVLAAEAGTLT-FMVG--GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISA 255 (355)
Q Consensus 179 g~~~~~~~g~~~-~~~g--g~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~ 255 (355)
. ..+. ++.| .++++++.++++++.+|+.++++++. .+. +.|.+... .++|++.++++ |+++
T Consensus 179 ~-------~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~v~v~~~-~gf----i~Nrll~~---~~~ea~~l~~~-G~~~ 242 (463)
T 1zcj_A 179 V-------MRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNC-YGF----VGNRMLAP---YYNQGFFLLEE-GSKP 242 (463)
T ss_dssp T-------CCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEBCCS-TTT----THHHHHHH---HHHHHHHHHHT-TCCH
T ss_pred c-------ceeEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEECCC-ccH----HHHHHHHH---HHHHHHHHHHc-CCCH
Confidence 1 2233 3443 48999999999999999999999872 222 33443333 35899999877 8999
Q ss_pred HHHHHHHH
Q 018506 256 STLTKILN 263 (355)
Q Consensus 256 ~~~~~~~~ 263 (355)
+++.+++.
T Consensus 243 ~~id~~~~ 250 (463)
T 1zcj_A 243 EDVDGVLE 250 (463)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999986
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=3e-16 Score=144.20 Aligned_cols=200 Identities=15% Similarity=0.157 Sum_probs=137.9
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHH-----------HhCC--------------CCCCCCHHH
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMF-----------SDMG--------------VPTKETPFE 97 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l-----------~~~g--------------~~~~~s~~e 97 (355)
....||+|||+|.||+.||..++.+|++|++||++++.++.. .+.| +..+++..+
T Consensus 4 p~~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~ 83 (319)
T 3ado_A 4 PAAGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAE 83 (319)
T ss_dssp ---CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHH
T ss_pred CCCCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHh
Confidence 345789999999999999999999999999999998865432 1222 223567888
Q ss_pred HhhcCCEEEEeCCCchHHHH-HhcCCCccccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeC
Q 018506 98 VAEASDVVITMLPSSSHVLD-VYNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 175 (355)
Q Consensus 98 ~~~~aDiVi~~v~~~~~~~~-vl~~~~~~l~~~~~~~~~ivi-~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~ 175 (355)
++++||+||-++|..-.++. ++.+++.+++ ++.|+- |+|+.++. ++.+.+.+ ..++-+.||+++
T Consensus 84 a~~~ad~ViEav~E~l~iK~~lf~~l~~~~~-----~~aIlaSNTSsl~is---~ia~~~~~------p~r~ig~HffNP 149 (319)
T 3ado_A 84 AVEGVVHIQECVPENLDLKRKIFAQLDSIVD-----DRVVLSSSSSCLLPS---KLFTGLAH------VKQCIVAHPVNP 149 (319)
T ss_dssp HTTTEEEEEECCCSCHHHHHHHHHHHHTTCC-----SSSEEEECCSSCCHH---HHHTTCTT------GGGEEEEEECSS
T ss_pred HhccCcEEeeccccHHHHHHHHHHHHHHHhh-----hcceeehhhhhccch---hhhhhccC------CCcEEEecCCCC
Confidence 99999999999999988875 5555444443 344443 33333443 34333321 111224789887
Q ss_pred CCCCChHHHhcCceEEEecCCHHHHHHHHHHHHHcCCCeEEe-CC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 018506 176 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYC-GG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGI 253 (355)
Q Consensus 176 pv~g~~~~~~~g~~~~~~gg~~~~~~~v~~ll~~~g~~~~~~-g~-~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi 253 (355)
|-.-.......+..+ ++++++.+..+++.+|++++.+ .+ +|. +.|.+. ...+.|++.+.++.+.
T Consensus 150 ~~~m~LVEiv~g~~T-----s~~~~~~~~~~~~~~gk~pv~v~kd~pGF------i~NRl~---~~~~~EA~~lv~eGva 215 (319)
T 3ado_A 150 PYYIPLVELVPHPET-----SPATVDRTHALMRKIGQSPVRVLKEIDGF------VLNRLQ---YAIISEAWRLVEEGIV 215 (319)
T ss_dssp TTTCCEEEEEECTTC-----CHHHHHHHHHHHHHTTCEEEECSSCCTTT------THHHHH---HHHHHHHHHHHHTTSS
T ss_pred ccccchHHhcCCCCC-----cHHHHHHHHHHHHHhCCccCCcCCCCCCE------eHHHHH---HHHHHHHHHHHHhCCC
Confidence 755444443334334 8999999999999999887655 44 432 335544 4457899999999999
Q ss_pred CHHHHHHHHHhcCCCcc
Q 018506 254 SASTLTKILNSSSARCW 270 (355)
Q Consensus 254 ~~~~~~~~~~~~~~~s~ 270 (355)
+++++..++..+.+..|
T Consensus 216 s~edID~~~~~g~g~~~ 232 (319)
T 3ado_A 216 SPSDLDLVMSDGLGMRY 232 (319)
T ss_dssp CHHHHHHHHHTTHHHHH
T ss_pred CHHHHHHHHHhCCCCCC
Confidence 99999999987765433
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.3e-14 Score=127.09 Aligned_cols=155 Identities=12% Similarity=0.068 Sum_probs=106.4
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPN 123 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~ 123 (355)
..|||+|||+|.||++|+..|.++||+|++|++. ++ ++++| |+|+|+. .+.+++.++.
T Consensus 5 ~~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~------------------~~-~~~aD--ilavP~~-ai~~vl~~l~ 62 (232)
T 3dfu_A 5 PRLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP------------------ED-IRDFE--LVVIDAH-GVEGYVEKLS 62 (232)
T ss_dssp CCCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG------------------GG-GGGCS--EEEECSS-CHHHHHHHHH
T ss_pred CCcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH------------------HH-hccCC--EEEEcHH-HHHHHHHHHH
Confidence 4589999999999999999999999999999982 12 46799 8999986 8888886654
Q ss_pred ccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEE-eCCCCCChHHHhcCceEEEecCCHHHHHH
Q 018506 124 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML-DAPVSGGVLAAEAGTLTFMVGGSEDAYQA 202 (355)
Q Consensus 124 ~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~-~~pv~g~~~~~~~g~~~~~~gg~~~~~~~ 202 (355)
+.+ .++++|+|+|+..+... +.. +.. . +..|+ .+|+.+. ..++.+++++.++.
T Consensus 63 ~~l-----~~g~ivvd~sgs~~~~v--l~~-~~~-----~-----g~~fvg~HPm~g~--------~~~i~a~d~~a~~~ 116 (232)
T 3dfu_A 63 AFA-----RRGQMFLHTSLTHGITV--MDP-LET-----S-----GGIVMSAHPIGQD--------RWVASALDELGETI 116 (232)
T ss_dssp TTC-----CTTCEEEECCSSCCGGG--GHH-HHH-----T-----TCEEEEEEEEETT--------EEEEEESSHHHHHH
T ss_pred Hhc-----CCCCEEEEECCcCHHHH--HHH-HHh-----C-----CCcEEEeeeCCCC--------ceeeeCCCHHHHHH
Confidence 433 25679999876544321 111 111 1 14555 4788654 35666678889999
Q ss_pred HHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018506 203 AKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLG 248 (355)
Q Consensus 203 v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la 248 (355)
++++++.+|.+++++++.......-.+ .....+..+..++..+.
T Consensus 117 l~~L~~~lG~~vv~~~~~~hd~~~AAv--sh~nhLv~L~~~A~~ll 160 (232)
T 3dfu_A 117 VGLLVGELGGSIVEIADDKRAQLAAAL--TYAGFLSTLQRDASYFL 160 (232)
T ss_dssp HHHHHHHTTCEECCCCGGGHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEeCHHHHhHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 999999999999999874333221111 11223344556666664
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.54 E-value=3e-14 Score=132.95 Aligned_cols=193 Identities=16% Similarity=0.135 Sum_probs=124.1
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhH-HHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhc-C
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNV-MKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYN-G 121 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~-~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~-~ 121 (355)
..|||+|||+|.||.++|..|.+.|++|++|+|++++ .+...+.|+... ++.++++++|+||+|+|.. ...+++. .
T Consensus 15 ~~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~G~~~~-~~~e~~~~aDvVilavp~~-~~~~v~~~~ 92 (338)
T 1np3_A 15 QGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVA-DVKTAVAAADVVMILTPDE-FQGRLYKEE 92 (338)
T ss_dssp HTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEE-CHHHHHHTCSEEEECSCHH-HHHHHHHHH
T ss_pred cCCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHHHCCCEEc-cHHHHHhcCCEEEEeCCcH-HHHHHHHHH
Confidence 4578999999999999999999999999999998876 555566777655 8889999999999999975 6678876 6
Q ss_pred CCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEE-eCCCCCChH---HHh---cCceEEEe-
Q 018506 122 PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML-DAPVSGGVL---AAE---AGTLTFMV- 193 (355)
Q Consensus 122 ~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~-~~pv~g~~~---~~~---~g~~~~~~- 193 (355)
+.+.++ ++++|+++++... .+.+... . .+..++ ..| .+... ... .|...+++
T Consensus 93 i~~~l~-----~~~ivi~~~gv~~----~~~~~~~------~----~~~~vv~~~P-~gp~~a~~~l~~~G~g~~~ii~~ 152 (338)
T 1np3_A 93 IEPNLK-----KGATLAFAHGFSI----HYNQVVP------R----ADLDVIMIAP-KAPGHTVRSEFVKGGGIPDLIAI 152 (338)
T ss_dssp TGGGCC-----TTCEEEESCCHHH----HTTSSCC------C----TTCEEEEEEE-SSCSHHHHHHHHTTCCCCEEEEE
T ss_pred HHhhCC-----CCCEEEEcCCchh----HHHhhcC------C----CCcEEEeccC-CCCchhHHHHHhccCCCeEEEEe
Confidence 554443 4578888754221 1111100 0 113333 345 22221 111 25545444
Q ss_pred --cCCHHHHHHHHHHHHHcCC-C--eEEeCCcchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 018506 194 --GGSEDAYQAAKPLFLSMGK-N--TIYCGGAGNGAAAKICNN-LTMAVSMLGVSEALTLGQSLGISASTL 258 (355)
Q Consensus 194 --gg~~~~~~~v~~ll~~~g~-~--~~~~g~~g~a~~~Kl~~n-~~~~~~~~~~~Ea~~la~~~Gi~~~~~ 258 (355)
..+.++.+.++.+++.+|. + ++.+..........+..+ .+.+....+++.++....+.|++++..
T Consensus 153 ~~~~~~~a~~~~~~l~~~lG~~~agv~~~~~~~~~~~~~~~s~~~l~G~lp~~ia~~~e~l~~~Gl~~~~a 223 (338)
T 1np3_A 153 YQDASGNAKNVALSYACGVGGGRTGIIETTFKDETETDLFGEQAVLCGGCVELVKAGFETLVEAGYAPEMA 223 (338)
T ss_dssp EECSSSCHHHHHHHHHHHTTHHHHCEEECCHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred cCCCCHHHHHHHHHHHHHcCCCccceEeechhcccchHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHH
Confidence 3467788999999999998 4 666653223333334444 222233344455555566899998754
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.1e-13 Score=132.48 Aligned_cols=90 Identities=16% Similarity=0.117 Sum_probs=71.5
Q ss_pred CceEEEEcccHHhHHHHHHHHH-CCCcEEEEe---CChhHHHHH-HhCC---------C---------C-CCCCHHHHhh
Q 018506 45 FESVGFIGLGNMGFRMASNLMK-AGYKMAVHD---VNCNVMKMF-SDMG---------V---------P-TKETPFEVAE 100 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~-~G~~V~v~d---r~~~~~~~l-~~~g---------~---------~-~~~s~~e~~~ 100 (355)
+|||+|||+|.||+++|..|++ +||+|++|+ |++++++.+ ++.+ . . .+++++++++
T Consensus 2 ~mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 81 (404)
T 3c7a_A 2 TVKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAIS 81 (404)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHHHT
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHHHhC
Confidence 4899999999999999999998 599999999 888888874 4332 1 1 4567888888
Q ss_pred cCCEEEEeCCCchHHHHHhcCCCccccCCCCCCCeEEEEc
Q 018506 101 ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDS 140 (355)
Q Consensus 101 ~aDiVi~~v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~ 140 (355)
++|+||+|||.. .+++++..+.+.+. ++++|++.
T Consensus 82 ~aD~Vilav~~~-~~~~v~~~l~~~l~-----~~~ivv~~ 115 (404)
T 3c7a_A 82 GADVVILTVPAF-AHEGYFQAMAPYVQ-----DSALIVGL 115 (404)
T ss_dssp TCSEEEECSCGG-GHHHHHHHHTTTCC-----TTCEEEET
T ss_pred CCCEEEEeCchH-HHHHHHHHHHhhCC-----CCcEEEEc
Confidence 999999999975 67888877666553 34677775
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=2.3e-12 Score=130.96 Aligned_cols=192 Identities=15% Similarity=0.226 Sum_probs=128.9
Q ss_pred CCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC----------------------CCCCCCCHHHHh
Q 018506 42 SCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM----------------------GVPTKETPFEVA 99 (355)
Q Consensus 42 ~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~----------------------g~~~~~s~~e~~ 99 (355)
.+...||+|||+|.||..||..++.+|++|+++|++++.++...+. .+..+++. +.+
T Consensus 313 ~~~i~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~l 391 (742)
T 3zwc_A 313 AQPVSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-KEL 391 (742)
T ss_dssp CCCCCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCG-GGG
T ss_pred cccccEEEEEcccHHHHHHHHHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcH-HHH
Confidence 3456799999999999999999999999999999999865432210 11233444 446
Q ss_pred hcCCEEEEeCCCchHHHH-HhcCCCccccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCC
Q 018506 100 EASDVVITMLPSSSHVLD-VYNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPV 177 (355)
Q Consensus 100 ~~aDiVi~~v~~~~~~~~-vl~~~~~~l~~~~~~~~~ivi-~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv 177 (355)
++||+||.+|+..-.++. ++.+++.+++ ++.|+. |+|+.++. .+.+.+.+ ..++-+.||.++|-
T Consensus 392 ~~aDlVIEAV~E~l~iK~~vf~~le~~~~-----~~aIlASNTSsl~i~---~ia~~~~~------p~r~ig~HFfnP~~ 457 (742)
T 3zwc_A 392 STVDLVVEAVFEDMNLKKKVFAELSALCK-----PGAFLCTNTSALNVD---DIASSTDR------PQLVIGTHFFSPAH 457 (742)
T ss_dssp GSCSEEEECCCSCHHHHHHHHHHHHHHSC-----TTCEEEECCSSSCHH---HHHTTSSC------GGGEEEEECCSSTT
T ss_pred hhCCEEEEeccccHHHHHHHHHHHhhcCC-----CCceEEecCCcCChH---HHHhhcCC------ccccccccccCCCC
Confidence 799999999999988885 5555455543 344443 33344433 34433321 11122478888765
Q ss_pred CCChHHHhcCceEEEecCCHHHHHHHHHHHHHcCCCeEEeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Q 018506 178 SGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISAS 256 (355)
Q Consensus 178 ~g~~~~~~~g~~~~~~gg~~~~~~~v~~ll~~~g~~~~~~g~-~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~ 256 (355)
.........+.-+ ++++++.+..+.+.+|+.++.+.+ +| .+.|.+. ...+.|++.+..+ |.+++
T Consensus 458 ~m~LVEvi~g~~T-----s~e~~~~~~~~~~~lgK~pV~vkd~pG------Fi~NRi~---~~~~~ea~~l~~e-G~~~~ 522 (742)
T 3zwc_A 458 VMRLLEVIPSRYS-----SPTTIATVMSLSKKIGKIGVVVGNCYG------FVGNRML---APYYNQGFFLLEE-GSKPE 522 (742)
T ss_dssp TCCEEEEEECSSC-----CHHHHHHHHHHHHHTTCEEEECCCSTT------TTHHHHH---HHHHHHHHHHHHT-TCCHH
T ss_pred CCceEEEecCCCC-----CHHHHHHHHHHHHHhCCCCcccCCCCC------ccHHHHh---hHHHHHHHHHHHc-CCCHH
Confidence 4444333333334 899999999999999999988876 33 2346544 3446898888765 78888
Q ss_pred HHHHHHH
Q 018506 257 TLTKILN 263 (355)
Q Consensus 257 ~~~~~~~ 263 (355)
++.+++.
T Consensus 523 ~id~a~~ 529 (742)
T 3zwc_A 523 DVDGVLE 529 (742)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8777764
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.1e-12 Score=119.15 Aligned_cols=117 Identities=16% Similarity=0.229 Sum_probs=92.2
Q ss_pred cccccCCCCCCCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCC
Q 018506 32 MRRFFSSQVPSCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPS 111 (355)
Q Consensus 32 ~~~~~~~~~~~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~ 111 (355)
+.+|.+.+......++|||||+|.||..+|+.|...|++|++|||+++..+. ....++++++++++|+|++++|.
T Consensus 109 ~g~w~~~~~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~-----~~~~~~l~ell~~aDiV~l~~P~ 183 (290)
T 3gvx_A 109 AGIFRQSPTTLLYGKALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQNV-----DVISESPADLFRQSDFVLIAIPL 183 (290)
T ss_dssp TTCCCCCCCCCCTTCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCTTC-----SEECSSHHHHHHHCSEEEECCCC
T ss_pred hcccccCCceeeecchheeeccCchhHHHHHHHHhhCcEEEEEecccccccc-----ccccCChHHHhhccCeEEEEeec
Confidence 3467766554556689999999999999999999999999999998765432 34556899999999999999997
Q ss_pred chHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 112 SSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 112 ~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
..+++.++.. +.++.+ .++.++||++++.+...+.+.+.+.+
T Consensus 184 t~~t~~li~~--~~l~~m--k~gailIN~aRG~~vd~~aL~~aL~~ 225 (290)
T 3gvx_A 184 TDKTRGMVNS--RLLANA--RKNLTIVNVARADVVSKPDMIGFLKE 225 (290)
T ss_dssp CTTTTTCBSH--HHHTTC--CTTCEEEECSCGGGBCHHHHHHHHHH
T ss_pred cccchhhhhH--HHHhhh--hcCceEEEeehhcccCCcchhhhhhh
Confidence 6666665532 234432 36789999999998888888888864
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=99.33 E-value=3e-12 Score=118.97 Aligned_cols=111 Identities=18% Similarity=0.196 Sum_probs=87.2
Q ss_pred CCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcC
Q 018506 42 SCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 121 (355)
Q Consensus 42 ~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~ 121 (355)
....++|||||+|.||..+|+.|...|++|++|||++++.+...+.++... +++++++++|+|++++|....++.++..
T Consensus 152 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-~l~e~l~~aDvVi~~vp~~~~t~~~i~~ 230 (330)
T 2gcg_A 152 GLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFV-STPELAAQSDFIVVACSLTPATEGLCNK 230 (330)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHGGGTCCEEEEESSSCCHHHHHTTTCEEC-CHHHHHHHCSEEEECCCCCTTTTTCBSH
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcchhHHHhcCceeC-CHHHHHhhCCEEEEeCCCChHHHHhhCH
Confidence 345689999999999999999999999999999998877666666666555 8899999999999999987665555431
Q ss_pred CCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 122 PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 122 ~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
..++.. .++.++||++++.+.....+.+.+.+
T Consensus 231 --~~~~~m--k~gailIn~srg~~v~~~aL~~aL~~ 262 (330)
T 2gcg_A 231 --DFFQKM--KETAVFINISRGDVVNQDDLYQALAS 262 (330)
T ss_dssp --HHHHHS--CTTCEEEECSCGGGBCHHHHHHHHHH
T ss_pred --HHHhcC--CCCcEEEECCCCcccCHHHHHHHHHc
Confidence 122221 25679999999988777788887764
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.1e-14 Score=131.39 Aligned_cols=134 Identities=16% Similarity=0.204 Sum_probs=94.8
Q ss_pred CCceEEEEcccHHhHHHHHHHHHC-CC-cEEEEeCChhHHHHHHhC-C--CCCCCCHHHHhhcCCEEEEeCCCchHHHHH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKA-GY-KMAVHDVNCNVMKMFSDM-G--VPTKETPFEVAEASDVVITMLPSSSHVLDV 118 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~-G~-~V~v~dr~~~~~~~l~~~-g--~~~~~s~~e~~~~aDiVi~~v~~~~~~~~v 118 (355)
..++|+|||+|.||..++..|.+. |+ +|.+|||++++.+.+.+. + +..+++++++++++|+||+|+|.. +.+
T Consensus 134 ~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~e~v~~aDiVi~atp~~---~~v 210 (312)
T 2i99_A 134 SSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQGEVRVCSSVQEAVAGADVIITVTLAT---EPI 210 (312)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSSCCEECSSHHHHHTTCSEEEECCCCS---SCC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhCCeEEeCCHHHHHhcCCEEEEEeCCC---Ccc
Confidence 457999999999999999999886 76 899999999999988763 5 666789999999999999999853 333
Q ss_pred hcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEe----CCC-CCCh---HHHhcCceE
Q 018506 119 YNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD----APV-SGGV---LAAEAGTLT 190 (355)
Q Consensus 119 l~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~----~pv-~g~~---~~~~~g~~~ 190 (355)
+.. .++ .++++|+++++..|.. +++.+.+.+ . +..|+| +|+ .|.. .....+++.
T Consensus 211 ~~~--~~l-----~~g~~vi~~g~~~p~~-~el~~~~~~-----~-----g~~~vD~~~~a~~~~G~~~~~~~~~~g~L~ 272 (312)
T 2i99_A 211 LFG--EWV-----KPGAHINAVGASRPDW-RELDDELMK-----E-----AVLYVDSQEAALKESGDVLLSGAEIFAELG 272 (312)
T ss_dssp BCG--GGS-----CTTCEEEECCCCSTTC-CSBCHHHHH-----H-----SEEEESCHHHHHHHCHHHHTTTCCCCEEHH
T ss_pred cCH--HHc-----CCCcEEEeCCCCCCCc-eeccHHHHh-----c-----CEEEECCHHHHHhhcCCcccChhhccccHH
Confidence 322 233 2567999998888864 555544432 1 267888 454 3332 112234455
Q ss_pred EEecCCHH
Q 018506 191 FMVGGSED 198 (355)
Q Consensus 191 ~~~gg~~~ 198 (355)
.|++|+.+
T Consensus 273 ~~v~G~~~ 280 (312)
T 2i99_A 273 EVIKGVKP 280 (312)
T ss_dssp HHHHTSSC
T ss_pred HHhCCCCC
Confidence 56666543
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.30 E-value=3.3e-13 Score=119.60 Aligned_cols=161 Identities=19% Similarity=0.122 Sum_probs=108.0
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcE-EEEeCChhHHHHHHhCCCCCCCCHHHHh-hcCCEEEEeCCCchHHHHHhcCCC
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKM-AVHDVNCNVMKMFSDMGVPTKETPFEVA-EASDVVITMLPSSSHVLDVYNGPN 123 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V-~v~dr~~~~~~~l~~~g~~~~~s~~e~~-~~aDiVi~~v~~~~~~~~vl~~~~ 123 (355)
|||||||+|.||..+++.|.+.|+++ .+||+++ +.+. ..+++++++ .++|+|++|+|+....+.+..
T Consensus 1 m~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~-~~~~-------~~~~~~~l~~~~~DvVv~~~~~~~~~~~~~~--- 69 (236)
T 2dc1_A 1 MLVGLIGYGAIGKFLAEWLERNGFEIAAILDVRG-EHEK-------MVRGIDEFLQREMDVAVEAASQQAVKDYAEK--- 69 (236)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSC-CCTT-------EESSHHHHTTSCCSEEEECSCHHHHHHHHHH---
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEEEecCc-chhh-------hcCCHHHHhcCCCCEEEECCCHHHHHHHHHH---
Confidence 68999999999999999999999997 7999985 2211 567899988 689999999997644443322
Q ss_pred ccccCCCCCCCeEEEEcCCCCHHHH---HHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecCCHHHH
Q 018506 124 GLLQGGNSVRPQLLIDSSTIDPQTS---RNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAY 200 (355)
Q Consensus 124 ~~l~~~~~~~~~ivi~~st~~~~~~---~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg~~~~~ 200 (355)
.++ .|+.+++.++..+... +++.+...+ .+. ..++++|++|+......+.+ +++...+
T Consensus 70 -~l~-----~G~~vv~~~~~~~~~~~~~~~l~~~a~~-----~g~----~~~i~~~~~g~~~~~~~~~~----~~~~~~~ 130 (236)
T 2dc1_A 70 -ILK-----AGIDLIVLSTGAFADRDFLSRVREVCRK-----TGR----RVYIASGAIGGLDAIFSASE----LIEEIVL 130 (236)
T ss_dssp -HHH-----TTCEEEESCGGGGGSHHHHHHHHHHHHH-----HCC----CEEECCTTCSCHHHHHHTGG----GEEEEEE
T ss_pred -HHH-----CCCcEEEECcccCChHHHHHHHHHHHHh-----cCC----eEEecCccccChHHHHHhhc----cccEEEE
Confidence 333 4568888887764322 556555432 111 23789999999887776663 3332222
Q ss_pred HHHHHHHHHcCCCeEEeCCcchH-HHHHHHHHHHHHH
Q 018506 201 QAAKPLFLSMGKNTIYCGGAGNG-AAAKICNNLTMAV 236 (355)
Q Consensus 201 ~~v~~ll~~~g~~~~~~g~~g~a-~~~Kl~~n~~~~~ 236 (355)
...++.++..+.++++.|+.+.+ ..+|...|.....
T Consensus 131 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~n~~~~~ 167 (236)
T 2dc1_A 131 TTRKNWRQFGRKGVIFEGSASEAAQKFPKNLNVAATL 167 (236)
T ss_dssp EEEEEGGGTTSCEEEEEEEHHHHHHHSTTCCHHHHHH
T ss_pred EEEcChHHcCcceEEEeccHHHHHHHCCchHHHHHHH
Confidence 33333455567777888885443 4667666765433
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.5e-12 Score=118.51 Aligned_cols=120 Identities=13% Similarity=0.171 Sum_probs=93.8
Q ss_pred cccccCCCCCCCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCC
Q 018506 32 MRRFFSSQVPSCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPS 111 (355)
Q Consensus 32 ~~~~~~~~~~~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~ 111 (355)
+.+|.+.+......++|||||+|.||..+|++|...|++|++|||++...+.+. +.....++++++++||+|++++|.
T Consensus 127 ~g~W~~~~~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~--~~~~~~~l~ell~~aDvV~l~lPl 204 (324)
T 3hg7_A 127 QRLWQSHPYQGLKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGFD--QVYQLPALNKMLAQADVIVSVLPA 204 (324)
T ss_dssp TTCCCCCCCCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCTTCS--EEECGGGHHHHHHTCSEEEECCCC
T ss_pred hCCCcCCCCcccccceEEEEEECHHHHHHHHHHHhCCCEEEEEcCChHHhhhhh--cccccCCHHHHHhhCCEEEEeCCC
Confidence 447877666666778999999999999999999999999999999874432221 122346899999999999999998
Q ss_pred chHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 112 SSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 112 ~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
..+++.++.. +.++.+ .++.++||++.+.+...+.+.+.+.+
T Consensus 205 t~~T~~li~~--~~l~~m--k~gailIN~aRG~~vde~aL~~aL~~ 246 (324)
T 3hg7_A 205 TRETHHLFTA--SRFEHC--KPGAILFNVGRGNAINEGDLLTALRT 246 (324)
T ss_dssp CSSSTTSBCT--TTTTCS--CTTCEEEECSCGGGBCHHHHHHHHHT
T ss_pred CHHHHHHhHH--HHHhcC--CCCcEEEECCCchhhCHHHHHHHHHc
Confidence 7677776643 244443 36789999999998888888888864
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.5e-11 Score=113.03 Aligned_cols=119 Identities=17% Similarity=0.182 Sum_probs=90.0
Q ss_pred ccccC--CCCCCCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCC
Q 018506 33 RRFFS--SQVPSCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLP 110 (355)
Q Consensus 33 ~~~~~--~~~~~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~ 110 (355)
..|.+ ........++|||||+|.||..+|+.|...|++|++|||++++ +...+.|+.. .+++++++++|+|++++|
T Consensus 128 g~w~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~-~~l~ell~~aDvV~l~~p 205 (307)
T 1wwk_A 128 GVWAKKEAMGIELEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNE-ERAKEVNGKF-VDLETLLKESDVVTIHVP 205 (307)
T ss_dssp TCCCTTTCCBCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHHHTTCEE-CCHHHHHHHCSEEEECCC
T ss_pred CCCCccCcCCcccCCceEEEEccCHHHHHHHHHHHHCCCEEEEECCCCCh-hhHhhcCccc-cCHHHHHhhCCEEEEecC
Confidence 35754 2223445689999999999999999999999999999999877 4455566654 378999999999999999
Q ss_pred CchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 111 SSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 111 ~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
...+++.++.. ..++.. .++.++||++++.+.....+.+.+.+
T Consensus 206 ~~~~t~~li~~--~~l~~m--k~ga~lin~arg~~vd~~aL~~aL~~ 248 (307)
T 1wwk_A 206 LVESTYHLINE--ERLKLM--KKTAILINTSRGPVVDTNALVKALKE 248 (307)
T ss_dssp CSTTTTTCBCH--HHHHHS--CTTCEEEECSCGGGBCHHHHHHHHHH
T ss_pred CChHHhhhcCH--HHHhcC--CCCeEEEECCCCcccCHHHHHHHHHh
Confidence 87666555431 133322 25689999999887777778787764
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.25 E-value=8.1e-12 Score=115.07 Aligned_cols=119 Identities=12% Similarity=0.107 Sum_probs=90.6
Q ss_pred ccccCCCCCCCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCc
Q 018506 33 RRFFSSQVPSCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 33 ~~~~~~~~~~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~ 112 (355)
..|..........++|||||+|.||..+|+.|...|++|++|||++++. ...+.|+.. .+++++++.+|+|++++|..
T Consensus 130 g~w~~~~~~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~-~~~~~g~~~-~~l~ell~~aDvVvl~~P~~ 207 (313)
T 2ekl_A 130 GIFKKIEGLELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIRE-KAEKINAKA-VSLEELLKNSDVISLHVTVS 207 (313)
T ss_dssp TCCCCCCCCCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSCCHH-HHHHTTCEE-CCHHHHHHHCSEEEECCCCC
T ss_pred CCCCCCCCCCCCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCcchh-HHHhcCcee-cCHHHHHhhCCEEEEeccCC
Confidence 3575333344566899999999999999999999999999999998775 345566654 48999999999999999987
Q ss_pred hHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 113 SHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 113 ~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
.+++.++.. ..++.. .++.++||++++.+...+.+.+.+.+
T Consensus 208 ~~t~~li~~--~~l~~m--k~ga~lIn~arg~~vd~~aL~~aL~~ 248 (313)
T 2ekl_A 208 KDAKPIIDY--PQFELM--KDNVIIVNTSRAVAVNGKALLDYIKK 248 (313)
T ss_dssp TTSCCSBCH--HHHHHS--CTTEEEEESSCGGGBCHHHHHHHHHT
T ss_pred hHHHHhhCH--HHHhcC--CCCCEEEECCCCcccCHHHHHHHHHc
Confidence 655544421 122222 25789999999988777788888764
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=99.24 E-value=8.2e-12 Score=116.55 Aligned_cols=110 Identities=16% Similarity=0.169 Sum_probs=89.0
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
..-++|||||+|.||..+|+.|...|++|++|||++. .+...+.|+...++++++++++|+|++++|...+++.++..
T Consensus 158 l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~~~~~g~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~- 235 (352)
T 3gg9_A 158 LKGQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENS-KERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITV- 235 (352)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSHHH-HHHHHHTTCEECSSHHHHHHHCSEEEECCCCSTTTTTCBCH-
T ss_pred CCCCEEEEEeECHHHHHHHHHHHhCCCEEEEECCCCC-HHHHHhcCceEeCCHHHHHhhCCEEEEeccCcHHHHHhhCH-
Confidence 4568999999999999999999999999999999863 34555677777779999999999999999987666665432
Q ss_pred CccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 123 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
..++.+ .++.++||++.+.+...+.+.+.+.+
T Consensus 236 -~~l~~m--k~gailIN~aRg~~vd~~aL~~aL~~ 267 (352)
T 3gg9_A 236 -ADLTRM--KPTALFVNTSRAELVEENGMVTALNR 267 (352)
T ss_dssp -HHHTTS--CTTCEEEECSCGGGBCTTHHHHHHHH
T ss_pred -HHHhhC--CCCcEEEECCCchhhcHHHHHHHHHh
Confidence 234432 36789999999988877888888864
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=99.24 E-value=4.8e-11 Score=113.74 Aligned_cols=202 Identities=15% Similarity=0.131 Sum_probs=118.5
Q ss_pred CCCC-ceEEEEcccHHhHHHHHHHHHC------CCcEEEEeCChh-HHHHHHhCCCCC----CCCHHHHhhcCCEEEEeC
Q 018506 42 SCQF-ESVGFIGLGNMGFRMASNLMKA------GYKMAVHDVNCN-VMKMFSDMGVPT----KETPFEVAEASDVVITML 109 (355)
Q Consensus 42 ~~~~-mkIgiIG~G~mG~~ia~~L~~~------G~~V~v~dr~~~-~~~~l~~~g~~~----~~s~~e~~~~aDiVi~~v 109 (355)
...- +||+|||+|+||.++|++|.++ |++|++++|+.+ ..+...+.|+.. +.++.|+++++|+||+++
T Consensus 50 ~L~GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~v~d~ta~s~aEAa~~ADVVILaV 129 (525)
T 3fr7_A 50 AFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLLI 129 (525)
T ss_dssp HTTTCSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCTTTTCEEEHHHHHHHCSEEEECS
T ss_pred HhcCCCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCCCEEecCCCCCHHHHHhcCCEEEECC
Confidence 3444 8999999999999999999999 999987776543 445556677775 368999999999999999
Q ss_pred CCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHH---HHhhchhhhccCCCCCce-EEeCCCCCChH---
Q 018506 110 PSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISA---AVSNCILKEKKDSWENPV-MLDAPVSGGVL--- 182 (355)
Q Consensus 110 ~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~---~~~~~~~~~~~g~~~~~~-~~~~pv~g~~~--- 182 (355)
|+. ...+++.++.+.++ ++++|+.+...... .+.+ .++ .++. +.-+|-.-+..
T Consensus 130 P~~-~~~eVl~eI~p~LK-----~GaILs~AaGf~I~---~le~~~i~~p-----------~dv~VVrVmPNtPg~~VR~ 189 (525)
T 3fr7_A 130 SDA-AQADNYEKIFSHMK-----PNSILGLSHGFLLG---HLQSAGLDFP-----------KNISVIAVCPKGMGPSVRR 189 (525)
T ss_dssp CHH-HHHHHHHHHHHHSC-----TTCEEEESSSHHHH---HHHHTTCCCC-----------TTSEEEEEEESSCHHHHHH
T ss_pred ChH-HHHHHHHHHHHhcC-----CCCeEEEeCCCCHH---HHhhhcccCC-----------CCCcEEEEecCCCchhHHH
Confidence 975 44567765444443 56676555443222 2222 111 0122 22234321221
Q ss_pred --HHh-----cCceEEEe-cC--CHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHH--HHHHHHHHHHHHHHH-HHH
Q 018506 183 --AAE-----AGTLTFMV-GG--SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNN--LTMAVSMLGVSEALT-LGQ 249 (355)
Q Consensus 183 --~~~-----~g~~~~~~-gg--~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n--~~~~~~~~~~~Ea~~-la~ 249 (355)
... .|...+++ .. +.+..+.+..++..+|...++-...-.-.-..+..- .+.+...+ +.|++. .+.
T Consensus 190 ~y~~G~~~~g~Gv~~liAv~qd~tgea~e~alala~aiG~~~vieTtf~eE~e~DLfgeqtvLsG~~pA-lieA~~d~lV 268 (525)
T 3fr7_A 190 LYVQGKEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHG-IVEALFRRYT 268 (525)
T ss_dssp HHHHHTTSTTCSCCEEEEEEECSSSCHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHTTTTHHHHH-HHHHHHHHHH
T ss_pred HHhcccccccCCccEEEEcCCCCCHHHHHHHHHHHHHCCCCeeeeeeeeeehhHhhhhhHhhhcCcHHH-HHHHHHHHHH
Confidence 111 45543333 23 347889999999999986321111111111112211 11122222 334443 388
Q ss_pred HcCCCHHHHHHHHHh
Q 018506 250 SLGISASTLTKILNS 264 (355)
Q Consensus 250 ~~Gi~~~~~~~~~~~ 264 (355)
+.|++++..+....+
T Consensus 269 e~G~~pe~Ay~~~~q 283 (525)
T 3fr7_A 269 EQGMDEEMAYKNTVE 283 (525)
T ss_dssp HTTCCHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHH
Confidence 899999987766554
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=99.24 E-value=2.9e-12 Score=117.91 Aligned_cols=120 Identities=16% Similarity=0.191 Sum_probs=92.2
Q ss_pred cccccCCCCCCCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCC
Q 018506 32 MRRFFSSQVPSCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPS 111 (355)
Q Consensus 32 ~~~~~~~~~~~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~ 111 (355)
+..|.+.+......++|||||+|.||..+|+.|...|++|++|||+++..+.+... ....+++++++++|+|++++|.
T Consensus 126 ~g~W~~~~~~~l~g~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~--~~~~~l~ell~~aDiV~l~~Pl 203 (315)
T 3pp8_A 126 QALWKPLPEYTREEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESY--VGREELRAFLNQTRVLINLLPN 203 (315)
T ss_dssp TTCCCCCCCCCSTTCCEEEECCSHHHHHHHHHHHTTTCCEEEEESSCCCCTTCEEE--ESHHHHHHHHHTCSEEEECCCC
T ss_pred hcccCCCCCCCcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCchhhhhhhhh--cccCCHHHHHhhCCEEEEecCC
Confidence 44787766556667899999999999999999999999999999987653322111 1125788999999999999997
Q ss_pred chHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 112 SSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 112 ~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
..+++.++.. ..++.+ .++.++||++.+.....+.+.+.+.+
T Consensus 204 t~~t~~li~~--~~l~~m--k~gailIN~aRG~~vd~~aL~~aL~~ 245 (315)
T 3pp8_A 204 TAQTVGIINS--ELLDQL--PDGAYVLNLARGVHVQEADLLAALDS 245 (315)
T ss_dssp CGGGTTCBSH--HHHTTS--CTTEEEEECSCGGGBCHHHHHHHHHH
T ss_pred chhhhhhccH--HHHhhC--CCCCEEEECCCChhhhHHHHHHHHHh
Confidence 7677666532 234432 36789999999998888888888864
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=99.23 E-value=1e-11 Score=113.74 Aligned_cols=116 Identities=14% Similarity=0.150 Sum_probs=89.4
Q ss_pred cccccCC-CCCCCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCC
Q 018506 32 MRRFFSS-QVPSCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLP 110 (355)
Q Consensus 32 ~~~~~~~-~~~~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~ 110 (355)
+..|.+. +......++|||||+|.||..+|++|...|++|++|||+++ +. +.....+++++++.+|+|++++|
T Consensus 110 ~g~w~~~~~~~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~dr~~~--~~----~~~~~~~l~ell~~aDvV~l~~P 183 (303)
T 1qp8_A 110 RGDYGRDVEIPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK--EG----PWRFTNSLEEALREARAAVCALP 183 (303)
T ss_dssp TTCCCCCSCCCCCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC--CS----SSCCBSCSHHHHTTCSEEEECCC
T ss_pred cCCCCCCCCCCCCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcc--cc----CcccCCCHHHHHhhCCEEEEeCc
Confidence 3467544 33345668999999999999999999999999999999876 21 34455688999999999999999
Q ss_pred CchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 111 SSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 111 ~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
...+++.++.. ..++.+ .++.++||++++.+...+.+.+.+.+
T Consensus 184 ~~~~t~~~i~~--~~l~~m--k~gailin~srg~~vd~~aL~~aL~~ 226 (303)
T 1qp8_A 184 LNKHTRGLVKY--QHLALM--AEDAVFVNVGRAEVLDRDGVLRILKE 226 (303)
T ss_dssp CSTTTTTCBCH--HHHTTS--CTTCEEEECSCGGGBCHHHHHHHHHH
T ss_pred CchHHHHHhCH--HHHhhC--CCCCEEEECCCCcccCHHHHHHHHHh
Confidence 88766666531 234432 36789999999988777778887764
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=99.23 E-value=7.3e-12 Score=116.75 Aligned_cols=112 Identities=17% Similarity=0.241 Sum_probs=91.5
Q ss_pred CCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcC
Q 018506 42 SCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 121 (355)
Q Consensus 42 ~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~ 121 (355)
...-++|||||+|.||..+|++|...|++|++|||++...+...+.|+...++++++++.+|+|++++|...+++.++..
T Consensus 161 ~l~gktvGIIG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~ 240 (351)
T 3jtm_A 161 DLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNK 240 (351)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHGGGCCEEEEECSSCCCHHHHHHHCCEECSCHHHHGGGCSEEEECSCCCTTTTTCBSH
T ss_pred cccCCEEeEEEeCHHHHHHHHHHHHCCCEEEEeCCCccCHHHHHhCCCeEcCCHHHHHhcCCEEEECCCCCHHHHHhhcH
Confidence 34568999999999999999999999999999999876666666667777789999999999999999976666655532
Q ss_pred CCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 122 PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 122 ~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
..++.+ .++.++||++.+.+...+.+.+.+.+
T Consensus 241 --~~l~~m--k~gailIN~aRG~~vde~aL~~aL~~ 272 (351)
T 3jtm_A 241 --ELIGKL--KKGVLIVNNARGAIMERQAVVDAVES 272 (351)
T ss_dssp --HHHHHS--CTTEEEEECSCGGGBCHHHHHHHHHH
T ss_pred --HHHhcC--CCCCEEEECcCchhhCHHHHHHHHHh
Confidence 234332 36789999999998888888888864
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=99.23 E-value=1.4e-11 Score=113.82 Aligned_cols=111 Identities=12% Similarity=0.154 Sum_probs=86.2
Q ss_pred CCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeC-ChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhc
Q 018506 42 SCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDV-NCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYN 120 (355)
Q Consensus 42 ~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr-~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~ 120 (355)
....++|||||+|.||..+|+.|...|++|++||| ++++. ...+.|+...++++++++.+|+|++++|...+++.++.
T Consensus 143 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~-~~~~~g~~~~~~l~ell~~aDvVil~~p~~~~t~~~i~ 221 (320)
T 1gdh_A 143 KLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSS-DEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFN 221 (320)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHH-HHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBS
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcChh-hhhhcCcEEcCCHHHHHhhCCEEEEeccCchHHHhhcC
Confidence 34568999999999999999999999999999999 88763 34445666666899999999999999998766665543
Q ss_pred CCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 121 GPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 121 ~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
. ..++.. .++.++||++++.+.....+.+.+.+
T Consensus 222 ~--~~l~~m--k~gailIn~arg~~vd~~aL~~aL~~ 254 (320)
T 1gdh_A 222 K--ATIKSL--PQGAIVVNTARGDLVDNELVVAALEA 254 (320)
T ss_dssp H--HHHTTS--CTTEEEEECSCGGGBCHHHHHHHHHH
T ss_pred H--HHHhhC--CCCcEEEECCCCcccCHHHHHHHHHh
Confidence 2 133322 36789999999877666777777764
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=2.7e-11 Score=112.70 Aligned_cols=110 Identities=15% Similarity=0.204 Sum_probs=85.7
Q ss_pred CCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcC
Q 018506 42 SCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 121 (355)
Q Consensus 42 ~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~ 121 (355)
....++|||||+|.||..+|+.|...|++|++|||++++ +...+.|+.. .+++++++++|+|++++|....++.++..
T Consensus 147 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~-~~l~~~l~~aDvVil~vp~~~~t~~~i~~ 224 (334)
T 2dbq_A 147 DVYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKE-EVERELNAEF-KPLEDLLRESDFVVLAVPLTRETYHLINE 224 (334)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHHHHCCEE-CCHHHHHHHCSEEEECCCCCTTTTTCBCH
T ss_pred CCCCCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcch-hhHhhcCccc-CCHHHHHhhCCEEEECCCCChHHHHhhCH
Confidence 345689999999999999999999999999999999877 5444455544 48889999999999999988666555531
Q ss_pred CCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 122 PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 122 ~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
..+.. ..++.++||++++.+...+.+.+.+.+
T Consensus 225 --~~~~~--mk~~ailIn~srg~~v~~~aL~~aL~~ 256 (334)
T 2dbq_A 225 --ERLKL--MKKTAILINIARGKVVDTNALVKALKE 256 (334)
T ss_dssp --HHHHH--SCTTCEEEECSCGGGBCHHHHHHHHHH
T ss_pred --HHHhc--CCCCcEEEECCCCcccCHHHHHHHHHh
Confidence 12222 125679999999988877788887764
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=8.3e-12 Score=115.69 Aligned_cols=110 Identities=23% Similarity=0.317 Sum_probs=87.3
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
...++|||||+|.||..+|+.|...|++|++|||++.+.+...+.|+... +++++++.+|+|++++|...+++.++..
T Consensus 143 l~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-~l~ell~~aDvV~l~~P~t~~t~~li~~- 220 (330)
T 4e5n_A 143 LDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLRQV-ACSELFASSDFILLALPLNADTLHLVNA- 220 (330)
T ss_dssp STTCEEEEECCSHHHHHHHHHTTTSCCEEEEECSSCCCHHHHHHHTEEEC-CHHHHHHHCSEEEECCCCSTTTTTCBCH-
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCCCcHhHHHhcCceeC-CHHHHHhhCCEEEEcCCCCHHHHHHhCH-
Confidence 45689999999999999999999999999999998755444444555443 8999999999999999977666655532
Q ss_pred CccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 123 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
..++.+ .++.++||++.+.+...+.+.+.+.+
T Consensus 221 -~~l~~m--k~gailIN~arg~~vd~~aL~~aL~~ 252 (330)
T 4e5n_A 221 -ELLALV--RPGALLVNPCRGSVVDEAAVLAALER 252 (330)
T ss_dssp -HHHTTS--CTTEEEEECSCGGGBCHHHHHHHHHH
T ss_pred -HHHhhC--CCCcEEEECCCCchhCHHHHHHHHHh
Confidence 244432 36789999999998888888888864
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.3e-11 Score=114.57 Aligned_cols=107 Identities=18% Similarity=0.266 Sum_probs=67.5
Q ss_pred CCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcC
Q 018506 42 SCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 121 (355)
Q Consensus 42 ~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~ 121 (355)
....++|||||+|.||..+|++|...|++|++|||++++ ..+.....++++++++||+|++++|...+++.++..
T Consensus 168 ~l~gktiGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~-----~~~~~~~~sl~ell~~aDvVil~vP~t~~t~~li~~ 242 (340)
T 4dgs_A 168 SPKGKRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLS-----GVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDA 242 (340)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCT-----TSCCEECSSHHHHHHTCSEEEECC----------CH
T ss_pred cccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCccc-----ccCceecCCHHHHHhcCCEEEEeCCCCHHHHHHhhH
Confidence 345689999999999999999999999999999998765 233445678999999999999999977777776632
Q ss_pred CCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 122 PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 122 ~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
..++.. .++.++||++.+.+...+.+.+.+.+
T Consensus 243 --~~l~~m--k~gailIN~aRG~vvde~aL~~aL~~ 274 (340)
T 4dgs_A 243 --SLLQAL--GPEGIVVNVARGNVVDEDALIEALKS 274 (340)
T ss_dssp --HHHHHT--TTTCEEEECSCC--------------
T ss_pred --HHHhcC--CCCCEEEECCCCcccCHHHHHHHHHc
Confidence 233332 25689999999998887888887754
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.21 E-value=5.4e-12 Score=116.46 Aligned_cols=121 Identities=12% Similarity=0.202 Sum_probs=91.7
Q ss_pred ccccccCCC-CCCCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeC
Q 018506 31 AMRRFFSSQ-VPSCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITML 109 (355)
Q Consensus 31 ~~~~~~~~~-~~~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v 109 (355)
++..|.+.. .....-++|||||+|.||..+|+.|...|++|++|||+++..+.+.. .....++++++++||+|++++
T Consensus 122 ~~~~W~~~~~~~~l~gktvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~--~~~~~~l~ell~~aDvV~l~l 199 (324)
T 3evt_A 122 GARQWALPMTTSTLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHFHE--TVAFTATADALATANFIVNAL 199 (324)
T ss_dssp TTCCSSCSSCCCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCCCCTTCSE--EEEGGGCHHHHHHCSEEEECC
T ss_pred hcCCcccCCCCccccCCeEEEECcCHHHHHHHHHHHhCCCEEEEECCCcchhHhHhh--ccccCCHHHHHhhCCEEEEcC
Confidence 344676653 44456689999999999999999999999999999998765433221 122457889999999999999
Q ss_pred CCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 110 PSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 110 ~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
|...+++.++.. +.++.+ .++.++||++.+.+...+.+.+.+.+
T Consensus 200 Plt~~t~~li~~--~~l~~m--k~gailIN~aRG~~vd~~aL~~aL~~ 243 (324)
T 3evt_A 200 PLTPTTHHLFST--ELFQQT--KQQPMLINIGRGPAVDTTALMTALDH 243 (324)
T ss_dssp CCCGGGTTCBSH--HHHHTC--CSCCEEEECSCGGGBCHHHHHHHHHT
T ss_pred CCchHHHHhcCH--HHHhcC--CCCCEEEEcCCChhhhHHHHHHHHHh
Confidence 987676665532 244432 36789999999998888888888864
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=99.21 E-value=1.1e-11 Score=115.90 Aligned_cols=112 Identities=16% Similarity=0.186 Sum_probs=88.5
Q ss_pred CCCCceEEEEcccHHhHHHHHHHH-HCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhc
Q 018506 42 SCQFESVGFIGLGNMGFRMASNLM-KAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYN 120 (355)
Q Consensus 42 ~~~~mkIgiIG~G~mG~~ia~~L~-~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~ 120 (355)
....++|||||+|.||..+|+.|. ..|++|++|||++++.+...+.|+..+++++++++++|+|++++|....++.++.
T Consensus 160 ~l~g~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~vp~~~~t~~li~ 239 (348)
T 2w2k_A 160 NPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLID 239 (348)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCSGGGTTCBC
T ss_pred CCCCCEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhhHhhcCcEEeCCHHHHhccCCEEEEeCCCChHHHHHhh
Confidence 345689999999999999999999 9999999999998766655555666666899999999999999998766666553
Q ss_pred CCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 121 GPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 121 ~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
. ..++. ..++.++||++++.+...+.+.+.+.+
T Consensus 240 ~--~~l~~--mk~gailin~srg~~vd~~aL~~aL~~ 272 (348)
T 2w2k_A 240 E--AFFAA--MKPGSRIVNTARGPVISQDALIAALKS 272 (348)
T ss_dssp H--HHHHH--SCTTEEEEECSCGGGBCHHHHHHHHHT
T ss_pred H--HHHhc--CCCCCEEEECCCCchhCHHHHHHHHHh
Confidence 2 12222 125789999999988877888887764
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=99.20 E-value=2e-11 Score=113.53 Aligned_cols=109 Identities=16% Similarity=0.179 Sum_probs=86.9
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
..-++|||||+|.||..+|++|...|++|++|||++...+... +...++++++++++||+|++++|...+++.++..
T Consensus 171 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~--g~~~~~~l~ell~~sDvV~l~~Plt~~T~~li~~- 247 (345)
T 4g2n_A 171 LTGRRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRLSHALEE--GAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDH- 247 (345)
T ss_dssp CTTCEEEEESCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHT--TCEECSSHHHHHHTCSEEEECSCCCGGGTTCBCH-
T ss_pred cCCCEEEEEEeChhHHHHHHHHHHCCCEEEEECCCCcchhhhc--CCeEeCCHHHHHhhCCEEEEecCCCHHHHHHhCH-
Confidence 3458999999999999999999999999999999875443322 6666679999999999999999987676665532
Q ss_pred CccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 123 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
..++.+ .++.++||++.+.....+.+.+.+.+
T Consensus 248 -~~l~~m--k~gailIN~aRG~~vde~aL~~aL~~ 279 (345)
T 4g2n_A 248 -DRIAKI--PEGAVVINISRGDLINDDALIEALRS 279 (345)
T ss_dssp -HHHHHS--CTTEEEEECSCGGGBCHHHHHHHHHH
T ss_pred -HHHhhC--CCCcEEEECCCCchhCHHHHHHHHHh
Confidence 233332 36789999999998888888888864
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.6e-11 Score=111.54 Aligned_cols=120 Identities=13% Similarity=0.138 Sum_probs=90.7
Q ss_pred cccccCC--CCCCCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeC
Q 018506 32 MRRFFSS--QVPSCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITML 109 (355)
Q Consensus 32 ~~~~~~~--~~~~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v 109 (355)
+..|.+. .......++|||||+|.||..+|+.|...|++|++|||++++ +...+.|+.. .+++++++.+|+|++++
T Consensus 150 ~g~W~~~~~~~~~l~g~tvgIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~-~~l~ell~~aDvV~l~~ 227 (335)
T 2g76_A 150 DGKWERKKFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISP-EVSASFGVQQ-LPLEEIWPLCDFITVHT 227 (335)
T ss_dssp TTCCCTGGGCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSCH-HHHHHTTCEE-CCHHHHGGGCSEEEECC
T ss_pred cCCCCccCCCCcCCCcCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcch-hhhhhcCcee-CCHHHHHhcCCEEEEec
Confidence 3356532 122345689999999999999999999999999999998776 3445566654 48999999999999999
Q ss_pred CCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 110 PSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 110 ~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
|...+++.++.. +.++.+ .++.++||++++.+...+.+.+.+.+
T Consensus 228 P~t~~t~~li~~--~~l~~m--k~gailIN~arg~vvd~~aL~~aL~~ 271 (335)
T 2g76_A 228 PLLPSTTGLLND--NTFAQC--KKGVRVVNCARGGIVDEGALLRALQS 271 (335)
T ss_dssp CCCTTTTTSBCH--HHHTTS--CTTEEEEECSCTTSBCHHHHHHHHHH
T ss_pred CCCHHHHHhhCH--HHHhhC--CCCcEEEECCCccccCHHHHHHHHHh
Confidence 988766665531 234332 36789999999987777778887764
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.2e-11 Score=114.62 Aligned_cols=107 Identities=16% Similarity=0.198 Sum_probs=84.3
Q ss_pred CCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcC
Q 018506 42 SCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 121 (355)
Q Consensus 42 ~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~ 121 (355)
....++|||||+|.||..+|+.|...|++|++|||++++. .+.....+++++++++|+|++++|....++.++..
T Consensus 161 ~l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~~~~-----~g~~~~~~l~ell~~aDvVil~vP~~~~t~~li~~ 235 (333)
T 3ba1_A 161 KFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPN-----TNYTYYGSVVELASNSDILVVACPLTPETTHIINR 235 (333)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSCCTT-----CCSEEESCHHHHHHTCSEEEECSCCCGGGTTCBCH
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCchhc-----cCceecCCHHHHHhcCCEEEEecCCChHHHHHhhH
Confidence 3456789999999999999999999999999999987653 24455678999999999999999987666665531
Q ss_pred CCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 122 PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 122 ~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
..++.. .++.++||++++.+...+.+.+.+.+
T Consensus 236 --~~l~~m--k~gailIn~srG~~vd~~aL~~aL~~ 267 (333)
T 3ba1_A 236 --EVIDAL--GPKGVLINIGRGPHVDEPELVSALVE 267 (333)
T ss_dssp --HHHHHH--CTTCEEEECSCGGGBCHHHHHHHHHH
T ss_pred --HHHhcC--CCCCEEEECCCCchhCHHHHHHHHHc
Confidence 122221 25679999999998877888888764
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=99.19 E-value=2.3e-11 Score=114.28 Aligned_cols=112 Identities=18% Similarity=0.220 Sum_probs=90.1
Q ss_pred CCCCceEEEEcccHHhHHHHHHHHHCCCc-EEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhc
Q 018506 42 SCQFESVGFIGLGNMGFRMASNLMKAGYK-MAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYN 120 (355)
Q Consensus 42 ~~~~mkIgiIG~G~mG~~ia~~L~~~G~~-V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~ 120 (355)
....++|||||+|.||..+|+.|...|++ |++|||++.+.+...+.|+....+++++++.+|+|++++|...+++.++.
T Consensus 161 ~l~g~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~ 240 (364)
T 2j6i_A 161 DIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLIN 240 (364)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHHHTTEEECSSHHHHHHTCSEEEECCCCSTTTTTCBC
T ss_pred cCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchhHHHhcCcEecCCHHHHHhcCCEEEECCCCChHHHHHhC
Confidence 45668999999999999999999999997 99999988666666666766667899999999999999998766666553
Q ss_pred CCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 121 GPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 121 ~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
. ..++.+ .++.++||++++.+...+.+.+.+.+
T Consensus 241 ~--~~l~~m--k~ga~lIn~arG~~vd~~aL~~aL~~ 273 (364)
T 2j6i_A 241 K--ELLSKF--KKGAWLVNTARGAICVAEDVAAALES 273 (364)
T ss_dssp H--HHHTTS--CTTEEEEECSCGGGBCHHHHHHHHHH
T ss_pred H--HHHhhC--CCCCEEEECCCCchhCHHHHHHHHHc
Confidence 2 233332 36789999999988777888888865
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=99.18 E-value=2.3e-11 Score=114.79 Aligned_cols=112 Identities=13% Similarity=0.125 Sum_probs=88.7
Q ss_pred CCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcC
Q 018506 42 SCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 121 (355)
Q Consensus 42 ~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~ 121 (355)
....++|||||+|.||..+|+.|...|++|++|||++.+.+...+.|+....+++++++.+|+|++++|...+++.++..
T Consensus 188 ~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~G~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~ 267 (393)
T 2nac_A 188 DLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMIND 267 (393)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSH
T ss_pred cCCCCEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchhhHhhcCceecCCHHHHHhcCCEEEEecCCchHHHHHhhH
Confidence 34568999999999999999999999999999999876655555556665678999999999999999987666665531
Q ss_pred CCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 122 PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 122 ~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
..++.+ .++.++||++.+.+...+.+.+.+.+
T Consensus 268 --~~l~~m--k~gailIN~aRG~~vde~aL~~aL~~ 299 (393)
T 2nac_A 268 --ETLKLF--KRGAYIVNTARGKLCDRDAVARALES 299 (393)
T ss_dssp --HHHTTS--CTTEEEEECSCGGGBCHHHHHHHHHT
T ss_pred --HHHhhC--CCCCEEEECCCchHhhHHHHHHHHHc
Confidence 233332 26789999999987777788888764
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=2.1e-11 Score=113.58 Aligned_cols=111 Identities=17% Similarity=0.167 Sum_probs=87.0
Q ss_pred CCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcC
Q 018506 42 SCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 121 (355)
Q Consensus 42 ~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~ 121 (355)
....++|||||+|.||..+|+.|...|++|++|||++++.. ..+.|+....+++++++.+|+|++++|...+++.++..
T Consensus 165 ~l~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~ 243 (347)
T 1mx3_A 165 RIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGV-ERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLIND 243 (347)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTH-HHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSH
T ss_pred CCCCCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchhh-HhhcCCeecCCHHHHHhcCCEEEEcCCCCHHHHHHhHH
Confidence 34568999999999999999999999999999999865422 23346655668999999999999999987666665532
Q ss_pred CCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 122 PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 122 ~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
..++.+ .++.++||++++.+...+.+.+.+.+
T Consensus 244 --~~l~~m--k~gailIN~arg~~vd~~aL~~aL~~ 275 (347)
T 1mx3_A 244 --FTVKQM--RQGAFLVNTARGGLVDEKALAQALKE 275 (347)
T ss_dssp --HHHTTS--CTTEEEEECSCTTSBCHHHHHHHHHH
T ss_pred --HHHhcC--CCCCEEEECCCChHHhHHHHHHHHHh
Confidence 233332 36789999999998888888888865
|
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=9.8e-11 Score=115.41 Aligned_cols=120 Identities=13% Similarity=0.194 Sum_probs=90.6
Q ss_pred cccccCCC--CCCCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeC
Q 018506 32 MRRFFSSQ--VPSCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITML 109 (355)
Q Consensus 32 ~~~~~~~~--~~~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v 109 (355)
..+|.+.. ......++|||||+|.||..+|++|...|++|++||++++. +...+.|+..+ +++++++.||+|++++
T Consensus 127 ~g~w~~~~~~~~~l~g~~vgIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g~~~~-~l~e~~~~aDvV~l~~ 204 (529)
T 1ygy_A 127 EHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSP-ARAAQLGIELL-SLDDLLARADFISVHL 204 (529)
T ss_dssp TTCCCGGGCCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCH-HHHHHHTCEEC-CHHHHHHHCSEEEECC
T ss_pred hCCCcccCcCccccCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCcEEc-CHHHHHhcCCEEEECC
Confidence 34675432 22345689999999999999999999999999999998753 33444566554 8999999999999999
Q ss_pred CCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 110 PSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 110 ~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
|...+++.++.. ..+.. ..++.+++|++++.+.....+.+.+.+
T Consensus 205 P~~~~t~~~i~~--~~~~~--~k~g~ilin~arg~iv~~~aL~~al~~ 248 (529)
T 1ygy_A 205 PKTPETAGLIDK--EALAK--TKPGVIIVNAARGGLVDEAALADAITG 248 (529)
T ss_dssp CCSTTTTTCBCH--HHHTT--SCTTEEEEECSCTTSBCHHHHHHHHHT
T ss_pred CCchHHHHHhCH--HHHhC--CCCCCEEEECCCCchhhHHHHHHHHHc
Confidence 987666666543 13332 236789999999988877778787754
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.3e-10 Score=106.84 Aligned_cols=104 Identities=17% Similarity=0.215 Sum_probs=81.6
Q ss_pred CCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcC
Q 018506 42 SCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 121 (355)
Q Consensus 42 ~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~ 121 (355)
....++|||||+|.||..+|++|...|++|++|||++++.. + ...+++++++.+|+|++++|...+++.++..
T Consensus 141 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~------~-~~~~l~ell~~aDvV~l~~p~~~~t~~li~~ 213 (311)
T 2cuk_A 141 DLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKPLP------Y-PFLSLEELLKEADVVSLHTPLTPETHRLLNR 213 (311)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSS------S-CBCCHHHHHHHCSEEEECCCCCTTTTTCBCH
T ss_pred CCCCCEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCcccc------c-ccCCHHHHHhhCCEEEEeCCCChHHHhhcCH
Confidence 34567899999999999999999999999999999876543 2 2468899999999999999987666665531
Q ss_pred CCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHh
Q 018506 122 PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVS 156 (355)
Q Consensus 122 ~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~ 156 (355)
..++.. .++.++||++++.+...+.+.+.+.
T Consensus 214 --~~l~~m--k~ga~lin~srg~~vd~~aL~~aL~ 244 (311)
T 2cuk_A 214 --ERLFAM--KRGAILLNTARGALVDTEALVEALR 244 (311)
T ss_dssp --HHHTTS--CTTCEEEECSCGGGBCHHHHHHHHT
T ss_pred --HHHhhC--CCCcEEEECCCCCccCHHHHHHHHh
Confidence 133332 3578999999988777677777764
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.12 E-value=4.5e-11 Score=111.06 Aligned_cols=109 Identities=20% Similarity=0.255 Sum_probs=84.4
Q ss_pred CCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcC
Q 018506 42 SCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 121 (355)
Q Consensus 42 ~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~ 121 (355)
....++|||||+|.||..+|+.|...|++|++|||++++ +...+.|+... +++++++++|+|++++|....++.++..
T Consensus 143 ~l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~~-~l~e~l~~aDiVil~vp~~~~t~~~i~~ 220 (333)
T 2d0i_A 143 SLYGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKV-NVEKELKARYM-DIDELLEKSDIVILALPLTRDTYHIINE 220 (333)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCH-HHHHHHTEEEC-CHHHHHHHCSEEEECCCCCTTTTTSBCH
T ss_pred CCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcch-hhhhhcCceec-CHHHHHhhCCEEEEcCCCChHHHHHhCH
Confidence 455689999999999999999999999999999999876 44444455443 7889999999999999987666665542
Q ss_pred CCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 122 PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 122 ~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
..++.. .++ ++||++++.+.....+.+.+.+
T Consensus 221 --~~~~~m--k~g-ilin~srg~~vd~~aL~~aL~~ 251 (333)
T 2d0i_A 221 --ERVKKL--EGK-YLVNIGRGALVDEKAVTEAIKQ 251 (333)
T ss_dssp --HHHHHT--BTC-EEEECSCGGGBCHHHHHHHHHT
T ss_pred --HHHhhC--CCC-EEEECCCCcccCHHHHHHHHHc
Confidence 122221 257 9999999988777777777754
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1e-10 Score=108.64 Aligned_cols=109 Identities=13% Similarity=0.144 Sum_probs=85.5
Q ss_pred CCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcC
Q 018506 42 SCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 121 (355)
Q Consensus 42 ~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~ 121 (355)
....++|||||+|.||..+|+.|...|++|++|||++++. +.+ .+...++++++++.+|+|++++|...+++.++..
T Consensus 143 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~~~-~~~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~ 219 (333)
T 1j4a_A 143 EVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPE--LEK-KGYYVDSLDDLYKQADVISLHVPDVPANVHMIND 219 (333)
T ss_dssp CGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH--HHH-TTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSH
T ss_pred cCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcchh--HHh-hCeecCCHHHHHhhCCEEEEcCCCcHHHHHHHhH
Confidence 3455799999999999999999999999999999988764 222 2455558999999999999999987666665432
Q ss_pred CCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 122 PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 122 ~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
..++.. .++.++||++.+.+...+.+.+.+.+
T Consensus 220 --~~l~~m--k~ga~lIn~arg~~vd~~aL~~aL~~ 251 (333)
T 1j4a_A 220 --ESIAKM--KQDVVIVNVSRGPLVDTDAVIRGLDS 251 (333)
T ss_dssp --HHHHHS--CTTEEEEECSCGGGBCHHHHHHHHHH
T ss_pred --HHHhhC--CCCcEEEECCCCcccCHHHHHHHHHh
Confidence 123322 26789999999988888888888865
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=7.2e-11 Score=109.64 Aligned_cols=108 Identities=19% Similarity=0.171 Sum_probs=84.6
Q ss_pred CCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcC
Q 018506 42 SCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 121 (355)
Q Consensus 42 ~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~ 121 (355)
....++|||||+|.||..+|+.|...|++|++|||+++. . .+.+... .++++++++||+|++++|...+++.++..
T Consensus 145 ~l~gktvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~-~~~~~~~-~~l~ell~~aDvV~l~~Plt~~t~~li~~ 220 (343)
T 2yq5_A 145 EIYNLTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNP--E-FEPFLTY-TDFDTVLKEADIVSLHTPLFPSTENMIGE 220 (343)
T ss_dssp CGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCG--G-GTTTCEE-CCHHHHHHHCSEEEECCCCCTTTTTCBCH
T ss_pred ccCCCeEEEEecCHHHHHHHHHHhhCCCEEEEECCChhh--h-hhccccc-cCHHHHHhcCCEEEEcCCCCHHHHHHhhH
Confidence 345689999999999999999999999999999998765 1 2223333 38999999999999999977666665532
Q ss_pred CCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 122 PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 122 ~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
..++.+ .++.++||++.+.+...+.+.+.+.+
T Consensus 221 --~~l~~m--k~gailIN~aRg~~vd~~aL~~aL~~ 252 (343)
T 2yq5_A 221 --KQLKEM--KKSAYLINCARGELVDTGALIKALQD 252 (343)
T ss_dssp --HHHHHS--CTTCEEEECSCGGGBCHHHHHHHHHH
T ss_pred --HHHhhC--CCCcEEEECCCChhhhHHHHHHHHHc
Confidence 233332 36789999999998888888888864
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.6e-10 Score=108.11 Aligned_cols=110 Identities=20% Similarity=0.195 Sum_probs=85.8
Q ss_pred CCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcC
Q 018506 42 SCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 121 (355)
Q Consensus 42 ~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~ 121 (355)
...-++|||||+|.||..+|+.+...|++|++|||++. .+...+.|+.. .+++++++.+|+|++++|...+++.++..
T Consensus 173 ~l~gktvGIIGlG~IG~~vA~~l~~fG~~V~~~d~~~~-~~~~~~~g~~~-~~l~ell~~aDvV~l~~Plt~~T~~li~~ 250 (365)
T 4hy3_A 173 LIAGSEIGIVGFGDLGKALRRVLSGFRARIRVFDPWLP-RSMLEENGVEP-ASLEDVLTKSDFIFVVAAVTSENKRFLGA 250 (365)
T ss_dssp CSSSSEEEEECCSHHHHHHHHHHTTSCCEEEEECSSSC-HHHHHHTTCEE-CCHHHHHHSCSEEEECSCSSCC---CCCH
T ss_pred ccCCCEEEEecCCcccHHHHHhhhhCCCEEEEECCCCC-HHHHhhcCeee-CCHHHHHhcCCEEEEcCcCCHHHHhhcCH
Confidence 34557999999999999999999999999999999853 34445566654 58999999999999999988777776532
Q ss_pred CCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 122 PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 122 ~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
+.++.+ .++.++||++.+.+...+.+.+.+.+
T Consensus 251 --~~l~~m--k~gailIN~aRG~~vde~aL~~aL~~ 282 (365)
T 4hy3_A 251 --EAFSSM--RRGAAFILLSRADVVDFDALMAAVSS 282 (365)
T ss_dssp --HHHHTS--CTTCEEEECSCGGGSCHHHHHHHHHT
T ss_pred --HHHhcC--CCCcEEEECcCCchhCHHHHHHHHHc
Confidence 244432 36789999999998888888888864
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.5e-10 Score=109.77 Aligned_cols=117 Identities=16% Similarity=0.207 Sum_probs=86.2
Q ss_pred ccccCCCC--CCCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCC
Q 018506 33 RRFFSSQV--PSCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLP 110 (355)
Q Consensus 33 ~~~~~~~~--~~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~ 110 (355)
..|..... ....-++|||||+|.||..+|+.+...|++|++||+++... ..+.....+++++++.||+|++++|
T Consensus 142 g~W~~~~~~~~el~gktvGIIGlG~IG~~vA~~l~~~G~~V~~yd~~~~~~----~~~~~~~~sl~ell~~aDvV~lhvP 217 (416)
T 3k5p_A 142 GGWEKTAIGSREVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQ----YGNVKPAASLDELLKTSDVVSLHVP 217 (416)
T ss_dssp TCCCCCCTTCCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCCCC----BTTBEECSSHHHHHHHCSEEEECCC
T ss_pred ccccccCCCCccCCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCcchhc----ccCcEecCCHHHHHhhCCEEEEeCC
Confidence 36665532 23445799999999999999999999999999999975321 1234456799999999999999999
Q ss_pred CchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 111 SSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 111 ~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
...+++.++.. +.++.+ .++.++||++.+.+...+.+.+.+.+
T Consensus 218 lt~~T~~li~~--~~l~~m--k~gailIN~aRG~vvd~~aL~~aL~~ 260 (416)
T 3k5p_A 218 SSKSTSKLITE--AKLRKM--KKGAFLINNARGSDVDLEALAKVLQE 260 (416)
T ss_dssp C-----CCBCH--HHHHHS--CTTEEEEECSCTTSBCHHHHHHHHHT
T ss_pred CCHHHhhhcCH--HHHhhC--CCCcEEEECCCChhhhHHHHHHHHHc
Confidence 87777766532 234332 36789999999998888888888864
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1.3e-10 Score=110.51 Aligned_cols=117 Identities=15% Similarity=0.105 Sum_probs=88.3
Q ss_pred ccccCCC--CCCCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCC
Q 018506 33 RRFFSSQ--VPSCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLP 110 (355)
Q Consensus 33 ~~~~~~~--~~~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~ 110 (355)
..|.+.. .....-++|||||+|.||..+|+++...|++|++|||++... ..++....+++++++.||+|++++|
T Consensus 131 g~W~~~~~~~~el~gktlGiIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~----~~~~~~~~~l~ell~~aDvV~l~~P 206 (404)
T 1sc6_A 131 GVGNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP----LGNATQVQHLSDLLNMSDVVSLHVP 206 (404)
T ss_dssp TCCC-----CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCC----CTTCEECSCHHHHHHHCSEEEECCC
T ss_pred CCccccCCCccccCCCEEEEEeECHHHHHHHHHHHHCCCEEEEEcCCchhc----cCCceecCCHHHHHhcCCEEEEccC
Confidence 3665432 223456899999999999999999999999999999976431 1234556689999999999999999
Q ss_pred CchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 111 SSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 111 ~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
...+++.++.. +.++.+ .++.++||++++.+...+.+.+.+.+
T Consensus 207 ~t~~t~~li~~--~~l~~m--k~ga~lIN~aRg~~vd~~aL~~aL~~ 249 (404)
T 1sc6_A 207 ENPSTKNMMGA--KEISLM--KPGSLLINASRGTVVDIPALADALAS 249 (404)
T ss_dssp SSTTTTTCBCH--HHHHHS--CTTEEEEECSCSSSBCHHHHHHHHHT
T ss_pred CChHHHHHhhH--HHHhhc--CCCeEEEECCCChHHhHHHHHHHHHc
Confidence 88777766532 234332 36789999999998877888888764
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.6e-10 Score=108.29 Aligned_cols=106 Identities=18% Similarity=0.221 Sum_probs=82.6
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchH----HHHH
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSH----VLDV 118 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~----~~~v 118 (355)
...++|||||+|+||..+|++|...|++|.+||++.+.. . ......++++++++||+|++++|...+ ++.+
T Consensus 117 l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~----~-~~~~~~sl~ell~~aDiV~l~~Plt~~g~~~T~~l 191 (381)
T 3oet_A 117 LRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAAR----G-DEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHL 191 (381)
T ss_dssp GGGCEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHT----T-CCSCBCCHHHHHHHCSEEEECCCCCCSSTTCCTTS
T ss_pred cCCCEEEEEeECHHHHHHHHHHHHCCCEEEEECCChHHh----c-cCcccCCHHHHHhhCCEEEEcCcCCccccccchhh
Confidence 345789999999999999999999999999999854322 1 233456899999999999999997655 5555
Q ss_pred hcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 119 YNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 119 l~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
+.. +.++.+ .++.++||++.+.+...+.+.+.+.+
T Consensus 192 i~~--~~l~~m--k~gailIN~aRG~vvde~aL~~aL~~ 226 (381)
T 3oet_A 192 ADE--TLIRRL--KPGAILINACRGPVVDNAALLARLNA 226 (381)
T ss_dssp BCH--HHHHHS--CTTEEEEECSCGGGBCHHHHHHHHHT
T ss_pred cCH--HHHhcC--CCCcEEEECCCCcccCHHHHHHHHHh
Confidence 432 234332 36789999999998888888888864
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=99.01 E-value=2.2e-10 Score=106.32 Aligned_cols=108 Identities=13% Similarity=0.094 Sum_probs=84.0
Q ss_pred CCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcC
Q 018506 42 SCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 121 (355)
Q Consensus 42 ~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~ 121 (355)
....++|||||+|.||..+|+.|...|++|++|||++++. + +..+. ..+++++++.+|+|++++|...+++.++..
T Consensus 142 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~~~~~-~~~l~ell~~aDvV~~~~P~~~~t~~li~~ 217 (333)
T 1dxy_A 142 ELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKG--D-HPDFD-YVSLEDLFKQSDVIDLHVPGIEQNTHIINE 217 (333)
T ss_dssp CGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSS--C-CTTCE-ECCHHHHHHHCSEEEECCCCCGGGTTSBCH
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCcchh--h-Hhccc-cCCHHHHHhcCCEEEEcCCCchhHHHHhCH
Confidence 4456899999999999999999999999999999987643 1 12222 348899999999999999988766665531
Q ss_pred CCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 122 PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 122 ~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
..++.+ .++.++||++++.+...+.+.+.+.+
T Consensus 218 --~~l~~m--k~ga~lIn~srg~~vd~~aL~~aL~~ 249 (333)
T 1dxy_A 218 --AAFNLM--KPGAIVINTARPNLIDTQAMLSNLKS 249 (333)
T ss_dssp --HHHHHS--CTTEEEEECSCTTSBCHHHHHHHHHT
T ss_pred --HHHhhC--CCCcEEEECCCCcccCHHHHHHHHHh
Confidence 233332 26789999999998887888888864
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=99.00 E-value=2.9e-10 Score=105.50 Aligned_cols=108 Identities=19% Similarity=0.155 Sum_probs=83.2
Q ss_pred CCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcC
Q 018506 42 SCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 121 (355)
Q Consensus 42 ~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~ 121 (355)
....++|||||+|.||..+|+.|...|++|++|||++++. + +..+. ..+++++++.+|+|++++|....++.++..
T Consensus 143 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~~~~~-~~~l~ell~~aDvV~~~~p~t~~t~~li~~ 218 (331)
T 1xdw_A 143 EVRNCTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKG--I-EDYCT-QVSLDEVLEKSDIITIHAPYIKENGAVVTR 218 (331)
T ss_dssp CGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCS--C-TTTCE-ECCHHHHHHHCSEEEECCCCCTTTCCSBCH
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCccHH--H-Hhccc-cCCHHHHHhhCCEEEEecCCchHHHHHhCH
Confidence 3455899999999999999999999999999999987653 2 22222 348999999999999999987665554431
Q ss_pred CCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 122 PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 122 ~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
..++.+ .++.++||++++.+...+.+.+.+.+
T Consensus 219 --~~l~~m--k~ga~lin~srg~~vd~~aL~~aL~~ 250 (331)
T 1xdw_A 219 --DFLKKM--KDGAILVNCARGQLVDTEAVIEAVES 250 (331)
T ss_dssp --HHHHTS--CTTEEEEECSCGGGBCHHHHHHHHHH
T ss_pred --HHHhhC--CCCcEEEECCCcccccHHHHHHHHHh
Confidence 233332 36789999999988887888888864
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.97 E-value=4.8e-10 Score=105.28 Aligned_cols=106 Identities=15% Similarity=0.148 Sum_probs=82.4
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchH----HHHH
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSH----VLDV 118 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~----~~~v 118 (355)
...++|||||+|+||..+|++|...|++|++||++++.. +.+. ...++++++++||+|++++|...+ ++.+
T Consensus 114 l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~----~~g~-~~~~l~ell~~aDvV~l~~Plt~~g~~~T~~l 188 (380)
T 2o4c_A 114 LAERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQAR----EPDG-EFVSLERLLAEADVISLHTPLNRDGEHPTRHL 188 (380)
T ss_dssp GGGCEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHH----STTS-CCCCHHHHHHHCSEEEECCCCCSSSSSCCTTS
T ss_pred cCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCChhhh----ccCc-ccCCHHHHHHhCCEEEEeccCccccccchhhh
Confidence 455789999999999999999999999999999876542 2333 346899999999999999998755 5554
Q ss_pred hcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 119 YNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 119 l~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
+. .+.++.+ .++.++||++++.+...+.+.+.+.+
T Consensus 189 i~--~~~l~~m--k~gailIN~sRG~vvd~~aL~~aL~~ 223 (380)
T 2o4c_A 189 LD--EPRLAAL--RPGTWLVNASRGAVVDNQALRRLLEG 223 (380)
T ss_dssp BC--HHHHHTS--CTTEEEEECSCGGGBCHHHHHHHHHT
T ss_pred cC--HHHHhhC--CCCcEEEECCCCcccCHHHHHHHHHh
Confidence 43 1234432 36789999999988877888888764
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.93 E-value=3e-09 Score=97.86 Aligned_cols=68 Identities=26% Similarity=0.285 Sum_probs=56.0
Q ss_pred CceEEEEcccHHhHHHHHHHHHCC--CcEEEEeCChhHHHHHHh-C---------CCCC-CCCHHHHhhcCCEEEEeCCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAG--YKMAVHDVNCNVMKMFSD-M---------GVPT-KETPFEVAEASDVVITMLPS 111 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G--~~V~v~dr~~~~~~~l~~-~---------g~~~-~~s~~e~~~~aDiVi~~v~~ 111 (355)
||||+|||+|.||.+++..|+++| ++|++|||++++++.+.. . .... +++. ++++++|+||++++.
T Consensus 1 m~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~aDvViiav~~ 79 (309)
T 1hyh_A 1 ARKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALADADVVISTLGN 79 (309)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGTTCSEEEECCSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHhCCCCEEEEecCC
Confidence 479999999999999999999999 899999999988766542 1 1232 3566 778899999999998
Q ss_pred ch
Q 018506 112 SS 113 (355)
Q Consensus 112 ~~ 113 (355)
+.
T Consensus 80 ~~ 81 (309)
T 1hyh_A 80 IK 81 (309)
T ss_dssp GG
T ss_pred cc
Confidence 65
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=98.88 E-value=3.1e-09 Score=86.35 Aligned_cols=88 Identities=19% Similarity=0.256 Sum_probs=68.6
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh-CCCC--CCCCHHHHhhcCCEEEEeCCCchHHHHHhcC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-MGVP--TKETPFEVAEASDVVITMLPSSSHVLDVYNG 121 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~-~g~~--~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~ 121 (355)
.++|+|||+|.||..++..|.+.|++|++|+|++++.+.+.+ .+.. ..++..++++++|+||.|+|.+.. ++.
T Consensus 21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Divi~at~~~~~---~~~- 96 (144)
T 3oj0_A 21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDSLIKNNDVIITATSSKTP---IVE- 96 (144)
T ss_dssp CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCEEEECSCHHHHHHTCSEEEECSCCSSC---SBC-
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCCceEeecCHHHHhcCCCEEEEeCCCCCc---Eee-
Confidence 478999999999999999999999999999999999888765 3433 456888899999999999997622 111
Q ss_pred CCccccCCCCCCCeEEEEcCC
Q 018506 122 PNGLLQGGNSVRPQLLIDSST 142 (355)
Q Consensus 122 ~~~~l~~~~~~~~~ivi~~st 142 (355)
...++ ++.+++|.+.
T Consensus 97 -~~~l~-----~g~~vid~~~ 111 (144)
T 3oj0_A 97 -ERSLM-----PGKLFIDLGN 111 (144)
T ss_dssp -GGGCC-----TTCEEEECCS
T ss_pred -HHHcC-----CCCEEEEccC
Confidence 12332 4568888865
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.87 E-value=3.5e-09 Score=96.91 Aligned_cols=95 Identities=20% Similarity=0.286 Sum_probs=72.7
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCC--CCCHHHHhhcCCEEEEeCCCchHHHHHhc
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT--KETPFEVAEASDVVITMLPSSSHVLDVYN 120 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~--~~s~~e~~~~aDiVi~~v~~~~~~~~vl~ 120 (355)
...++|+|||+|.||..+++.|...|++|++|||++++.+.+.+.|+.. ..+++++++.+|+|++++|....-+..
T Consensus 155 l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~~~i~~~~-- 232 (300)
T 2rir_A 155 IHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARITEMGLVPFHTDELKEHVKDIDICINTIPSMILNQTV-- 232 (300)
T ss_dssp STTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCEEEEGGGHHHHSTTCSEEEECCSSCCBCHHH--
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCeEEchhhHHHHhhCCCEEEECCChhhhCHHH--
Confidence 4558999999999999999999999999999999998877776666543 257888889999999999963111122
Q ss_pred CCCccccCCCCCCCeEEEEcCCCCHH
Q 018506 121 GPNGLLQGGNSVRPQLLIDSSTIDPQ 146 (355)
Q Consensus 121 ~~~~~l~~~~~~~~~ivi~~st~~~~ 146 (355)
++. ..++.++||++.....
T Consensus 233 -----~~~--mk~g~~lin~a~g~~~ 251 (300)
T 2rir_A 233 -----LSS--MTPKTLILDLASRPGG 251 (300)
T ss_dssp -----HTT--SCTTCEEEECSSTTCS
T ss_pred -----HHh--CCCCCEEEEEeCCCCC
Confidence 222 1256799999986443
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=98.86 E-value=4.5e-09 Score=95.02 Aligned_cols=93 Identities=15% Similarity=0.160 Sum_probs=71.1
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC-CCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~-g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
..++|+|||+|.||.+++..|.+.|++|++|||++++++.+.+. ++...+++.++++++|+||.|+|.... .++...+
T Consensus 128 ~~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDiVi~atp~~~~-~~~~~~i 206 (275)
T 2hk9_A 128 KEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPLEVVNSPEEVIDKVQVIVNTTSVGLK-DEDPEIF 206 (275)
T ss_dssp GGSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTTSCEEECSCGGGTGGGCSEEEECSSTTSS-TTCCCSS
T ss_pred CCCEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHcCCeeehhHHhhhcCCCEEEEeCCCCCC-CCCCCCC
Confidence 34789999999999999999999999999999999998888753 555555788888999999999997631 1111111
Q ss_pred C-ccccCCCCCCCeEEEEcCC
Q 018506 123 N-GLLQGGNSVRPQLLIDSST 142 (355)
Q Consensus 123 ~-~~l~~~~~~~~~ivi~~st 142 (355)
. ..+ .++++++|++.
T Consensus 207 ~~~~l-----~~g~~viDv~~ 222 (275)
T 2hk9_A 207 NYDLI-----KKDHVVVDIIY 222 (275)
T ss_dssp CGGGC-----CTTSEEEESSS
T ss_pred CHHHc-----CCCCEEEEcCC
Confidence 1 122 25679999988
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.82 E-value=2e-08 Score=92.15 Aligned_cols=107 Identities=13% Similarity=0.154 Sum_probs=80.4
Q ss_pred CCCceEEEEcccHHhHH-HHHHHHH-CCCcEE-EEeCChhHHHHHHh-CCCCCCCCHHHHhhcCCEEEEeCCCchHHHHH
Q 018506 43 CQFESVGFIGLGNMGFR-MASNLMK-AGYKMA-VHDVNCNVMKMFSD-MGVPTKETPFEVAEASDVVITMLPSSSHVLDV 118 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~-ia~~L~~-~G~~V~-v~dr~~~~~~~l~~-~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~v 118 (355)
|+++||||||+|.||.. ++..|.+ .+.++. ++|+++++++.+.+ .|+...++.++++++.|+|++|+|+....+.+
T Consensus 4 M~~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~ll~~~D~V~i~tp~~~h~~~~ 83 (308)
T 3uuw_A 4 MKNIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYRIMPFDSIESLAKKCDCIFLHSSTETHYEII 83 (308)
T ss_dssp -CCCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHTCCBCSCHHHHHTTCSEEEECCCGGGHHHHH
T ss_pred cccCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHHhcCCEEEEeCCcHhHHHHH
Confidence 56789999999999996 8888887 466765 89999999988876 46767889999999999999999988665554
Q ss_pred hcCCCccccCCCCCCCeEEEE-cCCCCHHHHHHHHHHHhh
Q 018506 119 YNGPNGLLQGGNSVRPQLLID-SSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 119 l~~~~~~l~~~~~~~~~ivi~-~st~~~~~~~~l~~~~~~ 157 (355)
.. .++. +..++++ ..+..+.+.+++.+...+
T Consensus 84 ~~----al~~----gk~vl~EKP~~~~~~~~~~l~~~a~~ 115 (308)
T 3uuw_A 84 KI----LLNL----GVHVYVDKPLASTVSQGEELIELSTK 115 (308)
T ss_dssp HH----HHHT----TCEEEECSSSSSSHHHHHHHHHHHHH
T ss_pred HH----HHHC----CCcEEEcCCCCCCHHHHHHHHHHHHH
Confidence 43 3332 2235555 456677777887776653
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=2.7e-08 Score=93.12 Aligned_cols=111 Identities=14% Similarity=0.148 Sum_probs=82.4
Q ss_pred CCCCCCCCceEEEEcccHHhHHHHHHHHHC--CCcE-EEEeCChhHHHHHHh-CCCCCCCCHHHHhh--cCCEEEEeCCC
Q 018506 38 SQVPSCQFESVGFIGLGNMGFRMASNLMKA--GYKM-AVHDVNCNVMKMFSD-MGVPTKETPFEVAE--ASDVVITMLPS 111 (355)
Q Consensus 38 ~~~~~~~~mkIgiIG~G~mG~~ia~~L~~~--G~~V-~v~dr~~~~~~~l~~-~g~~~~~s~~e~~~--~aDiVi~~v~~ 111 (355)
.+|..++++||||||+|.||..++..|.+. ++++ .++|+++++++.+.+ .++...++.+++++ +.|+|++|+|+
T Consensus 6 ~~m~~~~~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~ 85 (354)
T 3q2i_A 6 IPPITDRKIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERTGARGHASLTDMLAQTDADIVILTTPS 85 (354)
T ss_dssp CCCCCSSCEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHHCCEEESCHHHHHHHCCCSEEEECSCG
T ss_pred eecCCCCcceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEECCCc
Confidence 345556778999999999999999999987 6775 488999999988765 47777889999987 79999999998
Q ss_pred chHHHHHhcCCCccccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHh
Q 018506 112 SSHVLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVS 156 (355)
Q Consensus 112 ~~~~~~vl~~~~~~l~~~~~~~~~ivi~~-st~~~~~~~~l~~~~~ 156 (355)
....+.+.. .+.. +..++++. .+..+.+.+++.+...
T Consensus 86 ~~h~~~~~~----al~~----gk~v~~EKP~a~~~~~~~~l~~~a~ 123 (354)
T 3q2i_A 86 GLHPTQSIE----CSEA----GFHVMTEKPMATRWEDGLEMVKAAD 123 (354)
T ss_dssp GGHHHHHHH----HHHT----TCEEEECSSSCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HHHC----CCCEEEeCCCcCCHHHHHHHHHHHH
Confidence 766555443 2322 12355543 2456777777776654
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.2e-08 Score=91.47 Aligned_cols=98 Identities=12% Similarity=0.070 Sum_probs=71.4
Q ss_pred eEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC-CCCCCCCHHHHhhcCCEEEEeCCCchH--HHHHhcCCC
Q 018506 47 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSH--VLDVYNGPN 123 (355)
Q Consensus 47 kIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~-g~~~~~s~~e~~~~aDiVi~~v~~~~~--~~~vl~~~~ 123 (355)
+|+|||+|.||.+++..|.+.|++|++|||++++++.+.+. +.. .+++.++ +++|+||+|+|.... +...+. .
T Consensus 118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~~~~-~~~~~~~-~~~Divi~~tp~~~~~~~~~~l~--~ 193 (263)
T 2d5c_A 118 PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFGLR-AVPLEKA-REARLLVNATRVGLEDPSASPLP--A 193 (263)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHTCE-ECCGGGG-GGCSEEEECSSTTTTCTTCCSSC--G
T ss_pred eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccc-hhhHhhc-cCCCEEEEccCCCCCCCCCCCCC--H
Confidence 89999999999999999999999999999999988877652 443 4577788 899999999997621 111111 1
Q ss_pred ccccCCCCCCCeEEEEcCCCCHHHHHHHHHHH
Q 018506 124 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAV 155 (355)
Q Consensus 124 ~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~ 155 (355)
..+ .++++++|++.....+ .+.+..
T Consensus 194 ~~l-----~~g~~viD~~~~p~~t--~l~~~a 218 (263)
T 2d5c_A 194 ELF-----PEEGAAVDLVYRPLWT--RFLREA 218 (263)
T ss_dssp GGS-----CSSSEEEESCCSSSSC--HHHHHH
T ss_pred HHc-----CCCCEEEEeecCCccc--HHHHHH
Confidence 122 2467899998874332 344444
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=98.78 E-value=7.3e-09 Score=95.58 Aligned_cols=93 Identities=17% Similarity=0.124 Sum_probs=66.3
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHH----h------CC--CCCCCCHHHHhhcCCEEEEeCCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFS----D------MG--VPTKETPFEVAEASDVVITMLPS 111 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~----~------~g--~~~~~s~~e~~~~aDiVi~~v~~ 111 (355)
.|||+|||+|.||+++|..|+.+|+ +|++||+++++++... . .. +..+++. ++++++|+||++++.
T Consensus 4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~~~aDiVi~avg~ 82 (317)
T 2ewd_A 4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADISGSDVVIITASI 82 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCCC
Confidence 4799999999999999999999999 9999999988776531 1 11 2233566 778899999999932
Q ss_pred c---------------hHHHHHhcCCCccccCCCCCCCeEEEEcCCCC
Q 018506 112 S---------------SHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 112 ~---------------~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~ 144 (355)
+ ...++++..+.+.. ++.+++..|+..
T Consensus 83 p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~------~~~iii~~sNp~ 124 (317)
T 2ewd_A 83 PGRPKDDRSELLFGNARILDSVAEGVKKYC------PNAFVICITNPL 124 (317)
T ss_dssp SSCCSSCGGGGHHHHHHHHHHHHHHHHHHC------TTSEEEECCSSH
T ss_pred CCCCCCcHHHHHHhhHHHHHHHHHHHHHHC------CCcEEEEeCChH
Confidence 2 23455555543332 345777777643
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=98.77 E-value=1e-08 Score=82.73 Aligned_cols=97 Identities=16% Similarity=0.341 Sum_probs=71.2
Q ss_pred CCceEEEEcc----cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHh
Q 018506 44 QFESVGFIGL----GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVY 119 (355)
Q Consensus 44 ~~mkIgiIG~----G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl 119 (355)
...+|+|||+ |.||..++++|.+.||+|+.+|++.+.+ .|.....|+.|+.+..|++++++|. +.+.+++
T Consensus 13 ~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~i-----~G~~~~~s~~el~~~vDlvii~vp~-~~v~~v~ 86 (138)
T 1y81_A 13 EFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI-----EGLKCYRSVRELPKDVDVIVFVVPP-KVGLQVA 86 (138)
T ss_dssp -CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----TTEECBSSGGGSCTTCCEEEECSCH-HHHHHHH
T ss_pred CCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCeE-----CCeeecCCHHHhCCCCCEEEEEeCH-HHHHHHH
Confidence 4578999999 9999999999999999976666653222 5778888999998899999999995 6888877
Q ss_pred cCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHh
Q 018506 120 NGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVS 156 (355)
Q Consensus 120 ~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~ 156 (355)
++. .+.. .+.+++++++.. +++.+...
T Consensus 87 ~~~---~~~g---~~~i~~~~~~~~----~~l~~~a~ 113 (138)
T 1y81_A 87 KEA---VEAG---FKKLWFQPGAES----EEIRRFLE 113 (138)
T ss_dssp HHH---HHTT---CCEEEECTTSCC----HHHHHHHH
T ss_pred HHH---HHcC---CCEEEEcCccHH----HHHHHHHH
Confidence 653 2211 235777776642 44544443
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.75 E-value=9.4e-09 Score=94.88 Aligned_cols=67 Identities=24% Similarity=0.313 Sum_probs=53.4
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCC--cEEEEeCChhHHHHHHh---C------CCCC-CCCHHHHhhcCCEEEEeCCCch
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMKMFSD---M------GVPT-KETPFEVAEASDVVITMLPSSS 113 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~--~V~v~dr~~~~~~~l~~---~------g~~~-~~s~~e~~~~aDiVi~~v~~~~ 113 (355)
|||+|||+|.||.+++..|+.+|+ +|++||+++++++.+.. . .... .++ .++++++|+||++++.+.
T Consensus 1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d-~~~~~~aDvViiav~~~~ 79 (319)
T 1a5z_A 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD-YADLKGSDVVIVAAGVPQ 79 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC-GGGGTTCSEEEECCCCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEeCC-HHHhCCCCEEEEccCCCC
Confidence 699999999999999999999999 99999999988766542 1 1111 134 466789999999998653
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=2.3e-08 Score=92.74 Aligned_cols=66 Identities=18% Similarity=0.129 Sum_probs=54.2
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHH----h----C----CCCCCCCHHHHhhcCCEEEEeC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFS----D----M----GVPTKETPFEVAEASDVVITML 109 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~----~----~----g~~~~~s~~e~~~~aDiVi~~v 109 (355)
..|||+|||+|.||+++|..|+..|+ +|++||+++++++... + . .+..+++.+++++++|+||+++
T Consensus 8 ~~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiVi~a~ 86 (331)
T 1pzg_A 8 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTA 86 (331)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEEEEcc
Confidence 45899999999999999999999999 9999999998776521 1 1 1223578887899999999998
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.72 E-value=7.8e-08 Score=89.57 Aligned_cols=106 Identities=17% Similarity=0.245 Sum_probs=80.7
Q ss_pred CCceEEEEcccHHhHHHHHHHHHC-CCcEE-EEeCChhHHHHHHh-CCCCCCCCHHHHhh--cCCEEEEeCCCchHHHHH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSD-MGVPTKETPFEVAE--ASDVVITMLPSSSHVLDV 118 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~-G~~V~-v~dr~~~~~~~l~~-~g~~~~~s~~e~~~--~aDiVi~~v~~~~~~~~v 118 (355)
+++||||||+|.||..++..|.+. +++++ ++|+++++++.+.+ .|....++.+++++ +.|+|++|+|+....+.+
T Consensus 3 ~~~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~ 82 (344)
T 3euw_A 3 LTLRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEANGAEAVASPDEVFARDDIDGIVIGSPTSTHVDLI 82 (344)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTTTCEEESSHHHHTTCSCCCEEEECSCGGGHHHHH
T ss_pred CceEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEEeCCchhhHHHH
Confidence 357999999999999999999986 66755 88999999988776 46777889999998 899999999988666554
Q ss_pred hcCCCccccCCCCCCCeEEEEcC-CCCHHHHHHHHHHHhh
Q 018506 119 YNGPNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSN 157 (355)
Q Consensus 119 l~~~~~~l~~~~~~~~~ivi~~s-t~~~~~~~~l~~~~~~ 157 (355)
.. .+.. +..++++.- +..+.+.+++.+...+
T Consensus 83 ~~----al~~----gk~v~~EKP~~~~~~~~~~l~~~a~~ 114 (344)
T 3euw_A 83 TR----AVER----GIPALCEKPIDLDIEMVRACKEKIGD 114 (344)
T ss_dssp HH----HHHT----TCCEEECSCSCSCHHHHHHHHHHHGG
T ss_pred HH----HHHc----CCcEEEECCCCCCHHHHHHHHHHHHh
Confidence 43 2332 123565543 5667777877776653
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=5.5e-08 Score=90.91 Aligned_cols=108 Identities=19% Similarity=0.235 Sum_probs=79.9
Q ss_pred CCCCceEEEEcccHHhH-HHHHHHHHC-CCcEE-EEeCChhHHHHHHh-CCCCCCCCHHHHhh--cCCEEEEeCCCchHH
Q 018506 42 SCQFESVGFIGLGNMGF-RMASNLMKA-GYKMA-VHDVNCNVMKMFSD-MGVPTKETPFEVAE--ASDVVITMLPSSSHV 115 (355)
Q Consensus 42 ~~~~mkIgiIG~G~mG~-~ia~~L~~~-G~~V~-v~dr~~~~~~~l~~-~g~~~~~s~~e~~~--~aDiVi~~v~~~~~~ 115 (355)
+|+++||||||+|.||. .++..|.+. +++|+ ++||++++++.+.+ .|+...++.+++++ +.|+|++|+|+....
T Consensus 24 ~m~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~h~ 103 (350)
T 3rc1_A 24 NANPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGGEPVEGYPALLERDDVDAVYVPLPAVLHA 103 (350)
T ss_dssp --CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHCSEEEESHHHHHTCTTCSEEEECCCGGGHH
T ss_pred CCCceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEECCCcHHHH
Confidence 45678999999999998 799999887 67764 88999999988876 47777789999986 589999999988666
Q ss_pred HHHhcCCCccccCCCCCCCeEEEEcC-CCCHHHHHHHHHHHhh
Q 018506 116 LDVYNGPNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSN 157 (355)
Q Consensus 116 ~~vl~~~~~~l~~~~~~~~~ivi~~s-t~~~~~~~~l~~~~~~ 157 (355)
+.+.. .++. +..++++.- +..+.+.+++.+...+
T Consensus 104 ~~~~~----al~a----Gk~Vl~EKP~a~~~~ea~~l~~~a~~ 138 (350)
T 3rc1_A 104 EWIDR----ALRA----GKHVLAEKPLTTDRPQAERLFAVARE 138 (350)
T ss_dssp HHHHH----HHHT----TCEEEEESSSCSSHHHHHHHHHHHHH
T ss_pred HHHHH----HHHC----CCcEEEeCCCCCCHHHHHHHHHHHHH
Confidence 55543 2332 223565543 5567777777776543
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.70 E-value=3.5e-08 Score=89.91 Aligned_cols=94 Identities=19% Similarity=0.306 Sum_probs=71.4
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCC--CCHHHHhhcCCEEEEeCCCchHHHHHhc
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK--ETPFEVAEASDVVITMLPSSSHVLDVYN 120 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~--~s~~e~~~~aDiVi~~v~~~~~~~~vl~ 120 (355)
...++|+|||+|.||..+++.|...|.+|++|||++++.+.+.+.|+... .++.++++.+|+|++++|....-+..+.
T Consensus 153 l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~~~i~~~~l~ 232 (293)
T 3d4o_A 153 IHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRDVDVCINTIPALVVTANVLA 232 (293)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTSEEEEGGGHHHHTTTCSEEEECCSSCCBCHHHHH
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecChhhHHHHhcCCCEEEECCChHHhCHHHHH
Confidence 34578999999999999999999999999999999988776666665532 4678888999999999986321112221
Q ss_pred CCCccccCCCCCCCeEEEEcCCCCH
Q 018506 121 GPNGLLQGGNSVRPQLLIDSSTIDP 145 (355)
Q Consensus 121 ~~~~~l~~~~~~~~~ivi~~st~~~ 145 (355)
.+ .++.++||++....
T Consensus 233 ----~m-----k~~~~lin~ar~~~ 248 (293)
T 3d4o_A 233 ----EM-----PSHTFVIDLASKPG 248 (293)
T ss_dssp ----HS-----CTTCEEEECSSTTC
T ss_pred ----hc-----CCCCEEEEecCCCC
Confidence 12 24579999997543
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.70 E-value=9e-08 Score=88.68 Aligned_cols=104 Identities=16% Similarity=0.232 Sum_probs=79.3
Q ss_pred CceEEEEcccHHhHHHHHHHHHC-CCcEE-EEeCChhHHHHHHh-CCCCCCCCHHHHhh--cCCEEEEeCCCchHHHHHh
Q 018506 45 FESVGFIGLGNMGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSD-MGVPTKETPFEVAE--ASDVVITMLPSSSHVLDVY 119 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~-G~~V~-v~dr~~~~~~~l~~-~g~~~~~s~~e~~~--~aDiVi~~v~~~~~~~~vl 119 (355)
++||||||+|.||..++..|.+. +++++ ++|+++++++.+.+ .++. .++.+++++ +.|+|++|+|+....+.+.
T Consensus 3 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~ 81 (331)
T 4hkt_A 3 TVRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAYGCE-VRTIDAIEAAADIDAVVICTPTDTHADLIE 81 (331)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCE-ECCHHHHHHCTTCCEEEECSCGGGHHHHHH
T ss_pred ceEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHhCCC-cCCHHHHhcCCCCCEEEEeCCchhHHHHHH
Confidence 57999999999999999999985 67765 79999999988876 5677 889999987 7999999999876665544
Q ss_pred cCCCccccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhh
Q 018506 120 NGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSN 157 (355)
Q Consensus 120 ~~~~~~l~~~~~~~~~ivi~~-st~~~~~~~~l~~~~~~ 157 (355)
. .+.. +..++++. .+..+.+.+++.+...+
T Consensus 82 ~----al~~----gk~v~~EKP~~~~~~~~~~l~~~a~~ 112 (331)
T 4hkt_A 82 R----FARA----GKAIFCEKPIDLDAERVRACLKVVSD 112 (331)
T ss_dssp H----HHHT----TCEEEECSCSCSSHHHHHHHHHHHHH
T ss_pred H----HHHc----CCcEEEecCCCCCHHHHHHHHHHHHH
Confidence 3 2322 22355543 35667888888776653
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.70 E-value=8.5e-08 Score=88.86 Aligned_cols=107 Identities=9% Similarity=0.125 Sum_probs=80.2
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHC-CCcEE-EEeCChhHHHHHHh-CCC-CCCCCHHHHhh--cCCEEEEeCCCchHHH
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSD-MGV-PTKETPFEVAE--ASDVVITMLPSSSHVL 116 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~-G~~V~-v~dr~~~~~~~l~~-~g~-~~~~s~~e~~~--~aDiVi~~v~~~~~~~ 116 (355)
++++||||||+|.||..++..|.+. +.+|+ ++|+++++++.+.+ .++ ...++.+++++ +.|+|++|+|+....+
T Consensus 3 m~~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~ 82 (330)
T 3e9m_A 3 LDKIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELAIPVAYGSYEELCKDETIDIIYIPTYNQGHYS 82 (330)
T ss_dssp CCCEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTTCCCCBSSHHHHHHCTTCSEEEECCCGGGHHH
T ss_pred CCeEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcCCCceeCCHHHHhcCCCCCEEEEcCCCHHHHH
Confidence 4568999999999999999999985 56765 78999999988766 466 57789999987 7999999999886665
Q ss_pred HHhcCCCccccCCCCCCCeEEEEcC-CCCHHHHHHHHHHHhh
Q 018506 117 DVYNGPNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSN 157 (355)
Q Consensus 117 ~vl~~~~~~l~~~~~~~~~ivi~~s-t~~~~~~~~l~~~~~~ 157 (355)
.+.. .++. +..++++.- +..+.+.+++.+...+
T Consensus 83 ~~~~----al~~----gk~vl~EKP~~~~~~e~~~l~~~a~~ 116 (330)
T 3e9m_A 83 AAKL----ALSQ----GKPVLLEKPFTLNAAEAEELFAIAQE 116 (330)
T ss_dssp HHHH----HHHT----TCCEEECSSCCSSHHHHHHHHHHHHH
T ss_pred HHHH----HHHC----CCeEEEeCCCCCCHHHHHHHHHHHHH
Confidence 5443 2322 123565543 5567777777776643
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=3.2e-08 Score=92.33 Aligned_cols=103 Identities=15% Similarity=0.121 Sum_probs=76.7
Q ss_pred CCceEEEEcccHHhHHHHHHHHH--CCCcEEEEeCChhHHHHHHhC-----C--CCCCCCHHHHhhcCCEEEEeCCCchH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMK--AGYKMAVHDVNCNVMKMFSDM-----G--VPTKETPFEVAEASDVVITMLPSSSH 114 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~--~G~~V~v~dr~~~~~~~l~~~-----g--~~~~~s~~e~~~~aDiVi~~v~~~~~ 114 (355)
...+|+|||+|.||..++..|.. ...+|.+|||++++++++.+. + +..+++++++++++|+||+|+|+. .
T Consensus 128 ~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~~~~~~~eav~~aDiVi~aTps~-~ 206 (350)
T 1x7d_A 128 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADK-A 206 (350)
T ss_dssp TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCCS-S
T ss_pred cCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhccCceEEEeCCHHHHHhcCCEEEEeccCC-C
Confidence 45789999999999999998864 346899999999999888763 4 345678999999999999999975 2
Q ss_pred HHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHH
Q 018506 115 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAV 155 (355)
Q Consensus 115 ~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~ 155 (355)
...++.. .+++ +++.|+++++..|. .+++...+
T Consensus 207 ~~pvl~~--~~l~-----~G~~V~~vgs~~p~-~~El~~~~ 239 (350)
T 1x7d_A 207 YATIITP--DMLE-----PGMHLNAVGGDCPG-KTELHADV 239 (350)
T ss_dssp EEEEECG--GGCC-----TTCEEEECSCCBTT-BEEECHHH
T ss_pred CCceecH--HHcC-----CCCEEEECCCCCCC-ceeeCHHH
Confidence 2233321 2332 56789999998877 34454443
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=98.69 E-value=2.8e-08 Score=77.12 Aligned_cols=102 Identities=19% Similarity=0.206 Sum_probs=69.9
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCC-CcEEEEeCChhHHHHHHhCCCCC-------CCCHHHHhhcCCEEEEeCCCchHH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDMGVPT-------KETPFEVAEASDVVITMLPSSSHV 115 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G-~~V~v~dr~~~~~~~l~~~g~~~-------~~s~~e~~~~aDiVi~~v~~~~~~ 115 (355)
.+++|.|+|+|.||..++..|.+.| ++|++++|++++.+.+...++.. ..+..++++.+|+||.++|.. ..
T Consensus 4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~~~-~~ 82 (118)
T 3ic5_A 4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAAPFF-LT 82 (118)
T ss_dssp TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECSCGG-GH
T ss_pred CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECCCch-hh
Confidence 4578999999999999999999999 99999999999988887544321 123445667899999999754 33
Q ss_pred HHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHH
Q 018506 116 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAV 155 (355)
Q Consensus 116 ~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~ 155 (355)
..++.. ..+ .+..+++.++. +...+.+.+..
T Consensus 83 ~~~~~~---~~~-----~g~~~~~~~~~-~~~~~~~~~~~ 113 (118)
T 3ic5_A 83 PIIAKA---AKA-----AGAHYFDLTED-VAATNAVRALV 113 (118)
T ss_dssp HHHHHH---HHH-----TTCEEECCCSC-HHHHHHHHHHH
T ss_pred HHHHHH---HHH-----hCCCEEEecCc-HHHHHHHHHHH
Confidence 333322 111 23456666553 44555555543
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=98.69 E-value=1e-07 Score=89.15 Aligned_cols=106 Identities=16% Similarity=0.260 Sum_probs=80.3
Q ss_pred CCceEEEEcccHHhHHHHHHHHHC-CCcE-EEEeCChhHHHHHHh-CCCCCCCCHHHHh--hcCCEEEEeCCCchHHHHH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKA-GYKM-AVHDVNCNVMKMFSD-MGVPTKETPFEVA--EASDVVITMLPSSSHVLDV 118 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~-G~~V-~v~dr~~~~~~~l~~-~g~~~~~s~~e~~--~~aDiVi~~v~~~~~~~~v 118 (355)
+++||||||+|.||..++..|.+. ++++ .++|+++++++.+.+ .|+...++.++++ .+.|+|++|+|+....+.+
T Consensus 4 ~~~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~ 83 (354)
T 3db2_A 4 NPVGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYNCAGDATMEALLAREDVEMVIITVPNDKHAEVI 83 (354)
T ss_dssp CCEEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHTCCCCSSHHHHHHCSSCCEEEECSCTTSHHHHH
T ss_pred CcceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEEeCChHHHHHHH
Confidence 457999999999999999999987 6775 488999999988765 4777788999998 5699999999998666655
Q ss_pred hcCCCccccCCCCCCCeEEEEcC-CCCHHHHHHHHHHHhh
Q 018506 119 YNGPNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSN 157 (355)
Q Consensus 119 l~~~~~~l~~~~~~~~~ivi~~s-t~~~~~~~~l~~~~~~ 157 (355)
.. .++. +..++++.- +..+.+.+++.+...+
T Consensus 84 ~~----al~~----gk~vl~EKP~~~~~~~~~~l~~~a~~ 115 (354)
T 3db2_A 84 EQ----CARS----GKHIYVEKPISVSLDHAQRIDQVIKE 115 (354)
T ss_dssp HH----HHHT----TCEEEEESSSCSSHHHHHHHHHHHHH
T ss_pred HH----HHHc----CCEEEEccCCCCCHHHHHHHHHHHHH
Confidence 43 2332 223565543 5667777777776543
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.69 E-value=6.4e-08 Score=81.69 Aligned_cols=78 Identities=13% Similarity=0.158 Sum_probs=61.8
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHC-CCcEEEEeCChhHHHHHHhCCCCCC----CCH---HHH--hhcCCEEEEeCCCc
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKA-GYKMAVHDVNCNVMKMFSDMGVPTK----ETP---FEV--AEASDVVITMLPSS 112 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~-G~~V~v~dr~~~~~~~l~~~g~~~~----~s~---~e~--~~~aDiVi~~v~~~ 112 (355)
...++|.|+|+|.||..+++.|.+. |++|+++|+++++++.+.+.|+... ++. .++ ++++|+||++++++
T Consensus 37 ~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~~~ 116 (183)
T 3c85_A 37 PGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAMPHH 116 (183)
T ss_dssp CTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECCSSH
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCCCh
Confidence 3457899999999999999999999 9999999999999998888776532 222 233 56799999999987
Q ss_pred hHHHHHhc
Q 018506 113 SHVLDVYN 120 (355)
Q Consensus 113 ~~~~~vl~ 120 (355)
.....++.
T Consensus 117 ~~~~~~~~ 124 (183)
T 3c85_A 117 QGNQTALE 124 (183)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65555443
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=6.6e-08 Score=88.82 Aligned_cols=66 Identities=21% Similarity=0.196 Sum_probs=53.0
Q ss_pred ceEEEEcccHHhHHHHHHHHHC--CCcEEEEeCChhHHHHHHh---C-------C--CCCCCCHHHHhhcCCEEEEeCCC
Q 018506 46 ESVGFIGLGNMGFRMASNLMKA--GYKMAVHDVNCNVMKMFSD---M-------G--VPTKETPFEVAEASDVVITMLPS 111 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~--G~~V~v~dr~~~~~~~l~~---~-------g--~~~~~s~~e~~~~aDiVi~~v~~ 111 (355)
|||+|||+|.||.+++..|+.+ |++|++||+++++++.+.. . . +..+++.++ ++++|+||+++|.
T Consensus 1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l~~aDvViiav~~ 79 (310)
T 1guz_A 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TANSDIVIITAGL 79 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GTTCSEEEECCSC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-HCCCCEEEEeCCC
Confidence 7999999999999999999985 7999999999988765431 1 1 223356655 8899999999976
Q ss_pred c
Q 018506 112 S 112 (355)
Q Consensus 112 ~ 112 (355)
+
T Consensus 80 p 80 (310)
T 1guz_A 80 P 80 (310)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} | Back alignment and structure |
|---|
Probab=98.65 E-value=5.1e-08 Score=89.74 Aligned_cols=105 Identities=15% Similarity=0.197 Sum_probs=77.1
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHC-CCc-EEEEeCChhHHHHHHhCCCCCCCCHHHHhh--cCCEEEEeCCCchHHHHH
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKA-GYK-MAVHDVNCNVMKMFSDMGVPTKETPFEVAE--ASDVVITMLPSSSHVLDV 118 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~-G~~-V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~--~aDiVi~~v~~~~~~~~v 118 (355)
++++||||||+|.||..++..|.+. +++ |.++|+++++++.+.+. +...++.+++++ ++|+|++|+|+....+.+
T Consensus 8 ~~~~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~ 86 (315)
T 3c1a_A 8 NSPVRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLALVPPG-CVIESDWRSVVSAPEVEAVIIATPPATHAEIT 86 (315)
T ss_dssp -CCEEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTCCTT-CEEESSTHHHHTCTTCCEEEEESCGGGHHHHH
T ss_pred CCcceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHhh-CcccCCHHHHhhCCCCCEEEEeCChHHHHHHH
Confidence 4568999999999999999999986 566 45899999988776655 556678889885 799999999987555444
Q ss_pred hcCCCccccCCCCCCCeEEEE-cCCCCHHHHHHHHHHHh
Q 018506 119 YNGPNGLLQGGNSVRPQLLID-SSTIDPQTSRNISAAVS 156 (355)
Q Consensus 119 l~~~~~~l~~~~~~~~~ivi~-~st~~~~~~~~l~~~~~ 156 (355)
.. .++. +..++++ ..+..+.+.+++.+...
T Consensus 87 ~~----al~~----Gk~v~~eKP~~~~~~~~~~l~~~a~ 117 (315)
T 3c1a_A 87 LA----AIAS----GKAVLVEKPLTLDLAEAEAVAAAAK 117 (315)
T ss_dssp HH----HHHT----TCEEEEESSSCSCHHHHHHHHHHHH
T ss_pred HH----HHHC----CCcEEEcCCCcCCHHHHHHHHHHHH
Confidence 32 2332 1236666 35566777777777654
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.9e-07 Score=75.32 Aligned_cols=75 Identities=13% Similarity=0.240 Sum_probs=59.3
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCC----CCHHHH----hhcCCEEEEeCCCchHH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK----ETPFEV----AEASDVVITMLPSSSHV 115 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~----~s~~e~----~~~aDiVi~~v~~~~~~ 115 (355)
...+|.|+|+|.+|..+++.|.+.|++|+++|+++++++.+.+.|.... ++.+.+ +.++|+||++++++...
T Consensus 6 ~~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~~n 85 (140)
T 3fwz_A 6 ICNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGYEA 85 (140)
T ss_dssp CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCHHHH
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCChHHH
Confidence 3468999999999999999999999999999999999999888775421 222211 36899999999987544
Q ss_pred HHH
Q 018506 116 LDV 118 (355)
Q Consensus 116 ~~v 118 (355)
..+
T Consensus 86 ~~~ 88 (140)
T 3fwz_A 86 GEI 88 (140)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=98.64 E-value=6.6e-08 Score=89.46 Aligned_cols=66 Identities=21% Similarity=0.200 Sum_probs=53.0
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHH----h--------CCCCCCCCHHHHhhcCCEEEEeCCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFS----D--------MGVPTKETPFEVAEASDVVITMLPS 111 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~----~--------~g~~~~~s~~e~~~~aDiVi~~v~~ 111 (355)
.|||+|||+|.||+++|..|+.+|+ +|++||+++++++... + ..+..+++. +++++||+||++++.
T Consensus 14 ~~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~VI~avg~ 92 (328)
T 2hjr_A 14 RKKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQNSDVVIITAGV 92 (328)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHCCCCEEEEcCCC
Confidence 3799999999999999999999999 9999999998776421 1 013334566 788999999999843
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.4e-07 Score=75.98 Aligned_cols=69 Identities=17% Similarity=0.143 Sum_probs=55.0
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCC----CCCHHHH----hhcCCEEEEeCCCc
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT----KETPFEV----AEASDVVITMLPSS 112 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~----~~s~~e~----~~~aDiVi~~v~~~ 112 (355)
++++|.|+|+|.+|..++..|.+.|++|+++|+++++++.+.+.+... .++.+.+ ++++|+||+++++.
T Consensus 5 ~~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~~ 81 (141)
T 3llv_A 5 GRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGSDD 81 (141)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCSCH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecCCH
Confidence 457899999999999999999999999999999999999888766432 1222222 35789999999865
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.63 E-value=1.8e-07 Score=86.09 Aligned_cols=107 Identities=15% Similarity=0.216 Sum_probs=76.9
Q ss_pred CCCceEEEEcccHHhHH-HHHHHHHC-CCcEE-EEeCChhHHHHHHh-CCCCCCCCHHHHhhcCCEEEEeCCCchHHHHH
Q 018506 43 CQFESVGFIGLGNMGFR-MASNLMKA-GYKMA-VHDVNCNVMKMFSD-MGVPTKETPFEVAEASDVVITMLPSSSHVLDV 118 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~-ia~~L~~~-G~~V~-v~dr~~~~~~~l~~-~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~v 118 (355)
|+++||||||+|.||.. ++..|.+. +++++ ++|+++++.+.+.+ .|+...++.+++..+.|+|++|+|+....+.+
T Consensus 3 m~~~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~l~~~~D~V~i~tp~~~h~~~~ 82 (319)
T 1tlt_A 3 LKKLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHFDVV 82 (319)
T ss_dssp --CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHHHHHH
T ss_pred CCcceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCccCcHHHhhcCCCEEEEeCCchhHHHHH
Confidence 45689999999999996 88888764 67765 89999999888765 36667778877767899999999987655554
Q ss_pred hcCCCccccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhh
Q 018506 119 YNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSN 157 (355)
Q Consensus 119 l~~~~~~l~~~~~~~~~ivi~~-st~~~~~~~~l~~~~~~ 157 (355)
.. .++. +..++++. .+..+.+.+++.+...+
T Consensus 83 ~~----al~~----G~~v~~eKP~~~~~~~~~~l~~~a~~ 114 (319)
T 1tlt_A 83 ST----LLNA----GVHVCVDKPLAENLRDAERLVELAAR 114 (319)
T ss_dssp HH----HHHT----TCEEEEESSSCSSHHHHHHHHHHHHH
T ss_pred HH----HHHc----CCeEEEeCCCCCCHHHHHHHHHHHHH
Confidence 43 2332 22366663 45667777777776543
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.8e-07 Score=87.13 Aligned_cols=105 Identities=19% Similarity=0.321 Sum_probs=78.5
Q ss_pred CceEEEEcccHHhHHHHHHHHHC-CCcEE-EEeCChhHHHHHHh-CCCC-CCCCHHHHhh--cCCEEEEeCCCchHHHHH
Q 018506 45 FESVGFIGLGNMGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSD-MGVP-TKETPFEVAE--ASDVVITMLPSSSHVLDV 118 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~-G~~V~-v~dr~~~~~~~l~~-~g~~-~~~s~~e~~~--~aDiVi~~v~~~~~~~~v 118 (355)
++||||||+|.||..++..|.+. +.+++ ++|+++++++.+.+ .++. ..++.+++++ +.|+|++|+|+....+.+
T Consensus 2 ~~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~ 81 (344)
T 3ezy_A 2 SLRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGVEKAYKDPHELIEDPNVDAVLVCSSTNTHSELV 81 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCGGGHHHHH
T ss_pred eeEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhCCCceeCCHHHHhcCCCCCEEEEcCCCcchHHHH
Confidence 47999999999999999999875 56654 78999999888766 4553 6789999987 799999999987665554
Q ss_pred hcCCCccccCCCCCCCeEEEEcC-CCCHHHHHHHHHHHhh
Q 018506 119 YNGPNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSN 157 (355)
Q Consensus 119 l~~~~~~l~~~~~~~~~ivi~~s-t~~~~~~~~l~~~~~~ 157 (355)
.. .++. +..++++.- +..+.+.+++.+...+
T Consensus 82 ~~----al~~----gk~v~~EKP~~~~~~e~~~l~~~a~~ 113 (344)
T 3ezy_A 82 IA----CAKA----KKHVFCEKPLSLNLADVDRMIEETKK 113 (344)
T ss_dssp HH----HHHT----TCEEEEESCSCSCHHHHHHHHHHHHH
T ss_pred HH----HHhc----CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 43 2332 224666643 5677777887776543
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=98.60 E-value=3.7e-07 Score=85.58 Aligned_cols=106 Identities=17% Similarity=0.182 Sum_probs=79.8
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHC-CCcE-EEEeCChhHHHHHHhCCCCCCCCHHHHhh--cCCEEEEeCCCchHHHHH
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKA-GYKM-AVHDVNCNVMKMFSDMGVPTKETPFEVAE--ASDVVITMLPSSSHVLDV 118 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~-G~~V-~v~dr~~~~~~~l~~~g~~~~~s~~e~~~--~aDiVi~~v~~~~~~~~v 118 (355)
|+++||||||+|.||...+..|.+. +.+| .++|+++++.+...+.|+...++.+++++ +.|+|++|+|+....+.+
T Consensus 3 m~~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~ 82 (359)
T 3e18_A 3 LKKYQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAAQKGLKIYESYEAVLADEKVDAVLIATPNDSHKELA 82 (359)
T ss_dssp CCCEEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHHTTTCCBCSCHHHHHHCTTCCEEEECSCGGGHHHHH
T ss_pred CCcCcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHhcCCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHH
Confidence 4568999999999999999999886 5675 47899999987666678888899999987 789999999988666554
Q ss_pred hcCCCccccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHh
Q 018506 119 YNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVS 156 (355)
Q Consensus 119 l~~~~~~l~~~~~~~~~ivi~~-st~~~~~~~~l~~~~~ 156 (355)
.. .++. +..++++- .+..+.+.+++.+...
T Consensus 83 ~~----al~a----GkhVl~EKP~a~~~~ea~~l~~~a~ 113 (359)
T 3e18_A 83 IS----ALEA----GKHVVCEKPVTMTSEDLLAIMDVAK 113 (359)
T ss_dssp HH----HHHT----TCEEEEESSCCSSHHHHHHHHHHHH
T ss_pred HH----HHHC----CCCEEeeCCCcCCHHHHHHHHHHHH
Confidence 43 3332 22355553 3455777777776654
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.60 E-value=1.4e-07 Score=75.38 Aligned_cols=69 Identities=17% Similarity=0.266 Sum_probs=54.4
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh-CCCCC----CCCHHHH----hhcCCEEEEeCCCch
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-MGVPT----KETPFEV----AEASDVVITMLPSSS 113 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~-~g~~~----~~s~~e~----~~~aDiVi~~v~~~~ 113 (355)
.|+|.|+|+|.+|..++..|.+.|++|+++|+++++.+.+.+ .+... ..+...+ ++++|+||+++|++.
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~ 81 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEE 81 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCCch
Confidence 489999999999999999999999999999999999888765 35421 1223221 467999999998763
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.58 E-value=2.4e-07 Score=86.79 Aligned_cols=106 Identities=14% Similarity=0.210 Sum_probs=78.1
Q ss_pred CCCceEEEEcccHHhHHHHHHHH-H-CCCcEE-EEeCChhHHHHHHh-CC--CCCCCCHHHHhh--cCCEEEEeCCCchH
Q 018506 43 CQFESVGFIGLGNMGFRMASNLM-K-AGYKMA-VHDVNCNVMKMFSD-MG--VPTKETPFEVAE--ASDVVITMLPSSSH 114 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~-~-~G~~V~-v~dr~~~~~~~l~~-~g--~~~~~s~~e~~~--~aDiVi~~v~~~~~ 114 (355)
|+++||||||+|.||..++..|. + .+.+++ ++|+++++++.+.+ .+ ....++.+++++ +.|+|++|+|+...
T Consensus 21 m~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h 100 (357)
T 3ec7_A 21 GMTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAIEAKDYNDYHDLINDKDVEVVIITASNEAH 100 (357)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHTCCCEEESSHHHHHHCTTCCEEEECSCGGGH
T ss_pred CCeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEEcCCcHHH
Confidence 45679999999999999999998 4 366754 88999999988766 35 567789999987 48999999998876
Q ss_pred HHHHhcCCCccccCCCCCCCeEEEEcC-CCCHHHHHHHHHHHh
Q 018506 115 VLDVYNGPNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVS 156 (355)
Q Consensus 115 ~~~vl~~~~~~l~~~~~~~~~ivi~~s-t~~~~~~~~l~~~~~ 156 (355)
.+.+.. .++. +..++++.- +..+.+.+++.+...
T Consensus 101 ~~~~~~----al~a----Gk~Vl~EKPla~~~~e~~~l~~~a~ 135 (357)
T 3ec7_A 101 ADVAVA----ALNA----NKYVFCEKPLAVTAADCQRVIEAEQ 135 (357)
T ss_dssp HHHHHH----HHHT----TCEEEEESSSCSSHHHHHHHHHHHH
T ss_pred HHHHHH----HHHC----CCCEEeecCccCCHHHHHHHHHHHH
Confidence 665543 3332 223555543 556777777777654
|
| >3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.58 E-value=7e-08 Score=89.37 Aligned_cols=108 Identities=19% Similarity=0.175 Sum_probs=84.1
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
...++|||||+|.+|..+|+.+..-|.+|.+||+.+.. ...+.++. ..+++++++.||+|++++|-....+.++...
T Consensus 139 l~g~tvGIiG~G~IG~~va~~~~~fg~~v~~~d~~~~~--~~~~~~~~-~~~l~ell~~sDivslh~Plt~~T~~li~~~ 215 (334)
T 3kb6_A 139 LNRLTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVKRE--DLKEKGCV-YTSLDELLKESDVISLHVPYTKETHHMINEE 215 (334)
T ss_dssp GGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH--HHHHTTCE-ECCHHHHHHHCSEEEECCCCCTTTTTCBCHH
T ss_pred ecCcEEEEECcchHHHHHHHhhcccCceeeecCCccch--hhhhcCce-ecCHHHHHhhCCEEEEcCCCChhhccCcCHH
Confidence 34578999999999999999999999999999987543 23334443 4589999999999999999887766655432
Q ss_pred CccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 123 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
.++.+ .++.++||++-+..-..+.+.+.+.+
T Consensus 216 --~l~~m--k~~a~lIN~aRG~iVde~aL~~aL~~ 246 (334)
T 3kb6_A 216 --RISLM--KDGVYLINTARGKVVDTDALYRAYQR 246 (334)
T ss_dssp --HHHHS--CTTEEEEECSCGGGBCHHHHHHHHHT
T ss_pred --HHhhc--CCCeEEEecCccccccHHHHHHHHHh
Confidence 34433 36789999999987777778887764
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=98.57 E-value=2.9e-07 Score=85.64 Aligned_cols=106 Identities=19% Similarity=0.294 Sum_probs=76.5
Q ss_pred CCCceEEEEcccHHhHHHHHHHH-H-CCCc-EEEEeCChhHHHHHHh-CCC-CCCCCHHHHhh--cCCEEEEeCCCchHH
Q 018506 43 CQFESVGFIGLGNMGFRMASNLM-K-AGYK-MAVHDVNCNVMKMFSD-MGV-PTKETPFEVAE--ASDVVITMLPSSSHV 115 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~-~-~G~~-V~v~dr~~~~~~~l~~-~g~-~~~~s~~e~~~--~aDiVi~~v~~~~~~ 115 (355)
++++||||||+|.||..++..|. + .+++ |.++|+++++++.+.+ .|+ ...++.+++++ +.|+|++|+|+....
T Consensus 6 ~~~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~ 85 (346)
T 3cea_A 6 RKPLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYTNYKDMIDTENIDAIFIVAPTPFHP 85 (346)
T ss_dssp CCCEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEESCHHHHHTTSCCSEEEECSCGGGHH
T ss_pred CCcceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCChHhHH
Confidence 46789999999999999999998 5 3667 4688999999988766 366 45778999886 699999999987665
Q ss_pred HHHhcCCCccccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHh
Q 018506 116 LDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVS 156 (355)
Q Consensus 116 ~~vl~~~~~~l~~~~~~~~~ivi~~-st~~~~~~~~l~~~~~ 156 (355)
+.+.. .++. +..++++. .+..+.+.+++.+...
T Consensus 86 ~~~~~----al~~----G~~v~~eKp~~~~~~~~~~l~~~a~ 119 (346)
T 3cea_A 86 EMTIY----AMNA----GLNVFCEKPLGLDFNEVDEMAKVIK 119 (346)
T ss_dssp HHHHH----HHHT----TCEEEECSCCCSCHHHHHHHHHHHH
T ss_pred HHHHH----HHHC----CCEEEEcCCCCCCHHHHHHHHHHHH
Confidence 55443 2332 11355542 3455666667766554
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=98.57 E-value=2.3e-07 Score=85.62 Aligned_cols=91 Identities=20% Similarity=0.237 Sum_probs=70.1
Q ss_pred CCceEEEEcccHHhHHHHHHHHH--CCCcEEEEeCChhHHHHHHhC------CCCCCCCHHHHhhcCCEEEEeCCCchHH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMK--AGYKMAVHDVNCNVMKMFSDM------GVPTKETPFEVAEASDVVITMLPSSSHV 115 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~--~G~~V~v~dr~~~~~~~l~~~------g~~~~~s~~e~~~~aDiVi~~v~~~~~~ 115 (355)
..++|+|||+|.||..++..|.+ ...+|.+|||++++++++.+. .+. ++++++++ ++|+|++|+|...
T Consensus 124 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~~~~~-~~~~~e~v-~aDvVi~aTp~~~-- 199 (322)
T 1omo_A 124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISAS-VQPAEEAS-RCDVLVTTTPSRK-- 199 (322)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEE-ECCHHHHT-SSSEEEECCCCSS--
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcCceEE-ECCHHHHh-CCCEEEEeeCCCC--
Confidence 45789999999999999999987 346799999999999888652 234 67899999 9999999999752
Q ss_pred HHHhcCCCccccCCCCCCCeEEEEcCCCCHH
Q 018506 116 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ 146 (355)
Q Consensus 116 ~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~ 146 (355)
.++. ..+++ +++.|++.++..|.
T Consensus 200 -pv~~--~~~l~-----~G~~V~~ig~~~p~ 222 (322)
T 1omo_A 200 -PVVK--AEWVE-----EGTHINAIGADGPG 222 (322)
T ss_dssp -CCBC--GGGCC-----TTCEEEECSCCSTT
T ss_pred -ceec--HHHcC-----CCeEEEECCCCCCC
Confidence 2221 12332 56788888887776
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=98.56 E-value=7e-08 Score=88.91 Aligned_cols=69 Identities=16% Similarity=0.299 Sum_probs=51.7
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC--cEEEEeCChhHHH--HHH-hCCC------CC-CCCHHHHhhcCCEEEEeCCC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMK--MFS-DMGV------PT-KETPFEVAEASDVVITMLPS 111 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~--~V~v~dr~~~~~~--~l~-~~g~------~~-~~s~~e~~~~aDiVi~~v~~ 111 (355)
.+|||+|||+|.||+.++..|+.+|+ +|+++||++++++ .+. ..+. .. .++..+.++++|+||++++.
T Consensus 6 ~~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~aD~Vii~v~~ 85 (319)
T 1lld_A 6 KPTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVITAGP 85 (319)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEECCCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCCHHHhCCCCEEEECCCC
Confidence 45899999999999999999999999 9999999987765 221 1111 11 11124567899999999965
Q ss_pred c
Q 018506 112 S 112 (355)
Q Consensus 112 ~ 112 (355)
+
T Consensus 86 ~ 86 (319)
T 1lld_A 86 R 86 (319)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=2.2e-07 Score=87.99 Aligned_cols=94 Identities=15% Similarity=0.149 Sum_probs=73.0
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPN 123 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~ 123 (355)
.-++|+|||+|.+|..+|+.|...|.+|++||+++.+.......|... .+++++++.+|+|+++..+. .++..
T Consensus 210 ~GktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G~~~-~sL~eal~~ADVVilt~gt~----~iI~~-- 282 (436)
T 3h9u_A 210 AGKTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEGYQV-LLVEDVVEEAHIFVTTTGND----DIITS-- 282 (436)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCHHHHTTTCSEEEECSSCS----CSBCT--
T ss_pred cCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHHHHhCCee-cCHHHHHhhCCEEEECCCCc----CccCH--
Confidence 457899999999999999999999999999999998776666666654 48999999999999876543 22221
Q ss_pred ccccCCCCCCCeEEEEcCCCCHH
Q 018506 124 GLLQGGNSVRPQLLIDSSTIDPQ 146 (355)
Q Consensus 124 ~~l~~~~~~~~~ivi~~st~~~~ 146 (355)
..++.+ .++.+|+|++...++
T Consensus 283 e~l~~M--K~gAIVINvgRg~vE 303 (436)
T 3h9u_A 283 EHFPRM--RDDAIVCNIGHFDTE 303 (436)
T ss_dssp TTGGGC--CTTEEEEECSSSGGG
T ss_pred HHHhhc--CCCcEEEEeCCCCCc
Confidence 234332 367899999987653
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=3.4e-07 Score=85.28 Aligned_cols=104 Identities=15% Similarity=0.210 Sum_probs=77.3
Q ss_pred CceEEEEcccHHhHHHHHHHH-H-CCCcEE-EEeCChhHHHHHHh-CC--CCCCCCHHHHhhc--CCEEEEeCCCchHHH
Q 018506 45 FESVGFIGLGNMGFRMASNLM-K-AGYKMA-VHDVNCNVMKMFSD-MG--VPTKETPFEVAEA--SDVVITMLPSSSHVL 116 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~-~-~G~~V~-v~dr~~~~~~~l~~-~g--~~~~~s~~e~~~~--aDiVi~~v~~~~~~~ 116 (355)
++||||||+|.||..++..|. + .+++++ ++|+++++++.+.+ .+ ....++.++++++ .|+|++|+|+....+
T Consensus 2 ~~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~ 81 (344)
T 3mz0_A 2 SLRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQLNATVYPNDDSLLADENVDAVLVTSWGPAHES 81 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHTTCCCEEESSHHHHHHCTTCCEEEECSCGGGHHH
T ss_pred eEEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEECCCchhHHH
Confidence 479999999999999999998 4 366754 88999999988876 45 5677899999876 899999999886665
Q ss_pred HHhcCCCccccCCCCCCCeEEEEcC-CCCHHHHHHHHHHHh
Q 018506 117 DVYNGPNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVS 156 (355)
Q Consensus 117 ~vl~~~~~~l~~~~~~~~~ivi~~s-t~~~~~~~~l~~~~~ 156 (355)
.+.. .++. +..++++.- +..+.+.+++.+...
T Consensus 82 ~~~~----al~~----Gk~vl~EKP~a~~~~e~~~l~~~a~ 114 (344)
T 3mz0_A 82 SVLK----AIKA----QKYVFCEKPLATTAEGCMRIVEEEI 114 (344)
T ss_dssp HHHH----HHHT----TCEEEECSCSCSSHHHHHHHHHHHH
T ss_pred HHHH----HHHC----CCcEEEcCCCCCCHHHHHHHHHHHH
Confidence 5543 3332 123555443 556777777777654
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.1e-07 Score=86.96 Aligned_cols=67 Identities=18% Similarity=0.185 Sum_probs=50.0
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCC--cEEEEeCChhHHHHHHh---CC------CCCCCCHHHHhhcCCEEEEeCCCc
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMKMFSD---MG------VPTKETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~--~V~v~dr~~~~~~~l~~---~g------~~~~~s~~e~~~~aDiVi~~v~~~ 112 (355)
|||+|||+|.||.+++..|+.+|+ +|++||+++++++.... .. .....+..++++++|+||++++.+
T Consensus 1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~a~~~aDvVIi~~~~~ 78 (304)
T 2v6b_A 1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGGHSELADAQVVILTAGAN 78 (304)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEECGGGGTTCSEEEECC---
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECCHHHhCCCCEEEEcCCCC
Confidence 699999999999999999999999 99999999887654221 11 111112346788999999999654
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=98.56 E-value=1e-07 Score=91.89 Aligned_cols=110 Identities=14% Similarity=0.066 Sum_probs=80.6
Q ss_pred ccCCCCCCCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchH
Q 018506 35 FFSSQVPSCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSH 114 (355)
Q Consensus 35 ~~~~~~~~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~ 114 (355)
|.+.+.....-++|+|||+|.||..+|+.|...|.+|++||+++.+.......|+.. .+++++++.+|+|++++.+...
T Consensus 247 w~r~~~~~l~GktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~~~g~~~-~~l~ell~~aDiVi~~~~t~~l 325 (479)
T 1v8b_A 247 LMRATDFLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNV-VTLDEIVDKGDFFITCTGNVDV 325 (479)
T ss_dssp HHHHHCCCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEE-CCHHHHTTTCSEEEECCSSSSS
T ss_pred hhhccccccCCCEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHHHcCCEe-cCHHHHHhcCCEEEECCChhhh
Confidence 544333334567899999999999999999999999999999998765555566643 5899999999999999744322
Q ss_pred HHHHhcCCCccccCCCCCCCeEEEEcCCCCHH-HHHHHHH
Q 018506 115 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ-TSRNISA 153 (355)
Q Consensus 115 ~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~-~~~~l~~ 153 (355)
+.. ..++.+ .++.+++|++....+ ....+.+
T Consensus 326 ----I~~--~~l~~M--K~gailiNvgrg~~EId~~aL~~ 357 (479)
T 1v8b_A 326 ----IKL--EHLLKM--KNNAVVGNIGHFDDEIQVNELFN 357 (479)
T ss_dssp ----BCH--HHHTTC--CTTCEEEECSSTTTSBCHHHHHT
T ss_pred ----cCH--HHHhhc--CCCcEEEEeCCCCccccchhhhc
Confidence 211 123322 257899999999873 5566665
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=98.55 E-value=5.9e-07 Score=83.07 Aligned_cols=103 Identities=12% Similarity=0.187 Sum_probs=75.3
Q ss_pred ceEEEEcccHHhHHH-HHHHHHCCCcEE-EEeCChhHHHHHHh-CCCC-CCCCHHHHhh--cCCEEEEeCCCchHHHHHh
Q 018506 46 ESVGFIGLGNMGFRM-ASNLMKAGYKMA-VHDVNCNVMKMFSD-MGVP-TKETPFEVAE--ASDVVITMLPSSSHVLDVY 119 (355)
Q Consensus 46 mkIgiIG~G~mG~~i-a~~L~~~G~~V~-v~dr~~~~~~~l~~-~g~~-~~~s~~e~~~--~aDiVi~~v~~~~~~~~vl 119 (355)
|||||||+|.||..+ +..|.+.+++++ ++|+++++.+.+.+ .++. ..++.+++++ +.|+|++++|.....+.+.
T Consensus 1 ~~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~ 80 (332)
T 2glx_A 1 NRWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATENGIGKSVTSVEELVGDPDVDAVYVSTTNELHREQTL 80 (332)
T ss_dssp CEEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHTTCSCCBSCHHHHHTCTTCCEEEECSCGGGHHHHHH
T ss_pred CeEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChhHhHHHHH
Confidence 589999999999998 888888778864 88999999888765 4654 6788999886 4999999999875544443
Q ss_pred cCCCccccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHh
Q 018506 120 NGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVS 156 (355)
Q Consensus 120 ~~~~~~l~~~~~~~~~ivi~~-st~~~~~~~~l~~~~~ 156 (355)
. .++. +..++++. .+..+.+.+++.+...
T Consensus 81 ~----al~~----Gk~v~~ekP~~~~~~~~~~l~~~a~ 110 (332)
T 2glx_A 81 A----AIRA----GKHVLCEKPLAMTLEDAREMVVAAR 110 (332)
T ss_dssp H----HHHT----TCEEEECSSSCSSHHHHHHHHHHHH
T ss_pred H----HHHC----CCeEEEeCCCcCCHHHHHHHHHHHH
Confidence 2 2332 11355553 4556777777777654
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=98.55 E-value=3e-08 Score=80.67 Aligned_cols=95 Identities=16% Similarity=0.240 Sum_probs=69.7
Q ss_pred ceEEEEcc----cHHhHHHHHHHHHCCCcEEEEeCCh--hHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHh
Q 018506 46 ESVGFIGL----GNMGFRMASNLMKAGYKMAVHDVNC--NVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVY 119 (355)
Q Consensus 46 mkIgiIG~----G~mG~~ia~~L~~~G~~V~v~dr~~--~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl 119 (355)
.+|+|||+ |.||..++++|.+.||+|+.+|++. +.+ .|.....|+.|+.+..|++++++|+ ..+.+++
T Consensus 14 ~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~i-----~G~~~~~sl~el~~~~Dlvii~vp~-~~v~~v~ 87 (145)
T 2duw_A 14 RTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTL-----LGQQGYATLADVPEKVDMVDVFRNS-EAAWGVA 87 (145)
T ss_dssp CCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSEE-----TTEECCSSTTTCSSCCSEEECCSCS-THHHHHH
T ss_pred CEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCccccccc-----CCeeccCCHHHcCCCCCEEEEEeCH-HHHHHHH
Confidence 57999999 8999999999999999977776654 222 4777788899988899999999996 5888877
Q ss_pred cCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHh
Q 018506 120 NGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVS 156 (355)
Q Consensus 120 ~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~ 156 (355)
.+. .+. ..+.++++.++. .+++.+...
T Consensus 88 ~~~---~~~---g~~~i~i~~~~~----~~~l~~~a~ 114 (145)
T 2duw_A 88 QEA---IAI---GAKTLWLQLGVI----NEQAAVLAR 114 (145)
T ss_dssp HHH---HHH---TCCEEECCTTCC----CHHHHHHHH
T ss_pred HHH---HHc---CCCEEEEcCChH----HHHHHHHHH
Confidence 653 221 123477776554 244555554
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=1.1e-07 Score=78.07 Aligned_cols=76 Identities=18% Similarity=0.171 Sum_probs=58.3
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH-hCCCCCC----CCHH---HH-hhcCCEEEEeCCCch
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS-DMGVPTK----ETPF---EV-AEASDVVITMLPSSS 113 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~-~~g~~~~----~s~~---e~-~~~aDiVi~~v~~~~ 113 (355)
...++|.|+|+|.+|..++..|.+.|++|++++|++++++.+. ..|.... .+.+ ++ +..+|+||++++++.
T Consensus 17 ~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~~~~~ 96 (155)
T 2g1u_A 17 QKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFTNDDS 96 (155)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECSSCHH
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEeCCcH
Confidence 3458899999999999999999999999999999999988776 4554221 1222 22 567999999999865
Q ss_pred HHHHH
Q 018506 114 HVLDV 118 (355)
Q Consensus 114 ~~~~v 118 (355)
....+
T Consensus 97 ~~~~~ 101 (155)
T 2g1u_A 97 TNFFI 101 (155)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.53 E-value=4.1e-07 Score=83.92 Aligned_cols=104 Identities=15% Similarity=0.143 Sum_probs=73.0
Q ss_pred CceEEEEcccHHhH-HHHHHHHHC-CCcEEEEeCChhHHHHHHh-CCCCC-CCCHHHHh-hcCCEEEEeCCCchHHHHHh
Q 018506 45 FESVGFIGLGNMGF-RMASNLMKA-GYKMAVHDVNCNVMKMFSD-MGVPT-KETPFEVA-EASDVVITMLPSSSHVLDVY 119 (355)
Q Consensus 45 ~mkIgiIG~G~mG~-~ia~~L~~~-G~~V~v~dr~~~~~~~l~~-~g~~~-~~s~~e~~-~~aDiVi~~v~~~~~~~~vl 119 (355)
++||||||+|.||. .++..|.+. +++++++|+++++.+.+.+ .|+.. ..+..+++ .+.|+|++|+|+....+.+.
T Consensus 2 ~~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~D~V~i~tp~~~h~~~~~ 81 (323)
T 1xea_A 2 SLKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHSTLAA 81 (323)
T ss_dssp CEEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGHHHHHH
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHcCCCccccCHHHHhhcCCCEEEEECCchhHHHHHH
Confidence 47999999999998 599999875 6787799999999988765 46553 44444555 68999999999775544443
Q ss_pred cCCCccccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHh
Q 018506 120 NGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVS 156 (355)
Q Consensus 120 ~~~~~~l~~~~~~~~~ivi~~-st~~~~~~~~l~~~~~ 156 (355)
. .++. +..++++. .+.++.+.+++.+...
T Consensus 82 ~----al~~----Gk~V~~EKP~~~~~~~~~~l~~~a~ 111 (323)
T 1xea_A 82 F----FLHL----GIPTFVDKPLAASAQECENLYELAE 111 (323)
T ss_dssp H----HHHT----TCCEEEESCSCSSHHHHHHHHHHHH
T ss_pred H----HHHC----CCeEEEeCCCcCCHHHHHHHHHHHH
Confidence 2 2321 11366653 4556777777776654
|
| >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=98.52 E-value=4.2e-07 Score=84.30 Aligned_cols=106 Identities=13% Similarity=0.206 Sum_probs=78.6
Q ss_pred CCCceEEEEcccHHhH-HHHHHHHHCCCcE-EEEeCChhHHHHHHhC--CCCCCCCHHHHhh--cCCEEEEeCCCchHHH
Q 018506 43 CQFESVGFIGLGNMGF-RMASNLMKAGYKM-AVHDVNCNVMKMFSDM--GVPTKETPFEVAE--ASDVVITMLPSSSHVL 116 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~-~ia~~L~~~G~~V-~v~dr~~~~~~~l~~~--g~~~~~s~~e~~~--~aDiVi~~v~~~~~~~ 116 (355)
|+++||||||+|.+|. .++..|...+++| .++|+++++++.+.+. +....++.+++++ +.|+|++|+|+....+
T Consensus 2 M~~~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~ 81 (336)
T 2p2s_A 2 MKKIRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLFPSVPFAASAEQLITDASIDLIACAVIPCDRAE 81 (336)
T ss_dssp --CCEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHHSTTCCBCSCHHHHHTCTTCCEEEECSCGGGHHH
T ss_pred CCccEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHhcCCCcccCCHHHHhhCCCCCEEEEeCChhhHHH
Confidence 4678999999999996 6888887778885 6899999998887763 5677889999986 6899999999887666
Q ss_pred HHhcCCCccccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHh
Q 018506 117 DVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVS 156 (355)
Q Consensus 117 ~vl~~~~~~l~~~~~~~~~ivi~~-st~~~~~~~~l~~~~~ 156 (355)
.+.. .++. +..++++. .+..+.+.+++.+...
T Consensus 82 ~~~~----al~a----GkhVl~EKP~a~~~~e~~~l~~~a~ 114 (336)
T 2p2s_A 82 LALR----TLDA----GKDFFTAKPPLTTLEQLDAVQRRVA 114 (336)
T ss_dssp HHHH----HHHT----TCEEEECSSCCSCHHHHHHHHHHHH
T ss_pred HHHH----HHHC----CCcEEEeCCCCCCHHHHHHHHHHHH
Confidence 5553 2332 12366663 5566777777777654
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=2e-07 Score=85.93 Aligned_cols=65 Identities=20% Similarity=0.222 Sum_probs=52.1
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHH----h------CC--CCCCCCHHHHhhcCCEEEEeCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFS----D------MG--VPTKETPFEVAEASDVVITMLP 110 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~----~------~g--~~~~~s~~e~~~~aDiVi~~v~ 110 (355)
+|||+|||+|.||.+++..|+..|+ +|.+||+++++++... + .. +..+++. +++++||+||+++.
T Consensus 4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~Vi~a~g 81 (322)
T 1t2d_A 4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLAGADVVIVTAG 81 (322)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGTTCSEEEECCS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCC
Confidence 4799999999999999999999998 9999999988765321 1 11 2233566 78899999999983
|
| >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=5.9e-07 Score=86.35 Aligned_cols=110 Identities=15% Similarity=0.232 Sum_probs=79.3
Q ss_pred CCCCCCCceEEEEcccHHhH-HHHHHHHHC-CCcE-EEEeCChhHHHHHHh-CCCC-----CCCCHHHHhh--cCCEEEE
Q 018506 39 QVPSCQFESVGFIGLGNMGF-RMASNLMKA-GYKM-AVHDVNCNVMKMFSD-MGVP-----TKETPFEVAE--ASDVVIT 107 (355)
Q Consensus 39 ~~~~~~~mkIgiIG~G~mG~-~ia~~L~~~-G~~V-~v~dr~~~~~~~l~~-~g~~-----~~~s~~e~~~--~aDiVi~ 107 (355)
+.+.++++||||||+|.||. .++..|.+. ++++ .++|+++++.+.+.+ .|+. ..++.+++++ +.|+|++
T Consensus 77 ~~~~~~~irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V~i 156 (433)
T 1h6d_A 77 PMPEDRRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYI 156 (433)
T ss_dssp CCCCCCCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEE
T ss_pred CCCCCCceEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCCHHHHhcCCCCCEEEE
Confidence 44456778999999999997 899999875 4564 688999999888765 4554 5778889886 7899999
Q ss_pred eCCCchHHHHHhcCCCccccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHh
Q 018506 108 MLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVS 156 (355)
Q Consensus 108 ~v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~-st~~~~~~~~l~~~~~ 156 (355)
|+|+....+.+.. .++. +..++++. .+....+.+++.+...
T Consensus 157 atp~~~h~~~~~~----al~a----Gk~Vl~EKPla~~~~e~~~l~~~a~ 198 (433)
T 1h6d_A 157 ILPNSLHAEFAIR----AFKA----GKHVMCEKPMATSVADCQRMIDAAK 198 (433)
T ss_dssp CSCGGGHHHHHHH----HHHT----TCEEEECSSCCSSHHHHHHHHHHHH
T ss_pred cCCchhHHHHHHH----HHHC----CCcEEEcCCCCCCHHHHHHHHHHHH
Confidence 9998766555543 2332 11355553 3456777777776654
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=1.7e-07 Score=90.70 Aligned_cols=101 Identities=14% Similarity=0.098 Sum_probs=74.9
Q ss_pred CCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcC
Q 018506 42 SCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 121 (355)
Q Consensus 42 ~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~ 121 (355)
...-++|+|||+|.||..+|+.|...|.+|++|||++.+.......|+.. .+++++++.+|+|++++.+...+ ..
T Consensus 274 ~L~GktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~~~G~~~-~~l~ell~~aDiVi~~~~t~~lI----~~ 348 (494)
T 3d64_A 274 MIAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYRV-VTMEYAADKADIFVTATGNYHVI----NH 348 (494)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHHTTTCEE-CCHHHHTTTCSEEEECSSSSCSB----CH
T ss_pred ccCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHHHcCCEe-CCHHHHHhcCCEEEECCCccccc----CH
Confidence 34557899999999999999999999999999999998754444456554 48999999999999998543222 10
Q ss_pred CCccccCCCCCCCeEEEEcCCCCHH-HHHHH
Q 018506 122 PNGLLQGGNSVRPQLLIDSSTIDPQ-TSRNI 151 (355)
Q Consensus 122 ~~~~l~~~~~~~~~ivi~~st~~~~-~~~~l 151 (355)
..++.+ .++.++||++..... ....+
T Consensus 349 --~~l~~M--K~gAilINvgrg~veID~~aL 375 (494)
T 3d64_A 349 --DHMKAM--RHNAIVCNIGHFDSEIDVAST 375 (494)
T ss_dssp --HHHHHC--CTTEEEEECSSSSCSBCCGGG
T ss_pred --HHHhhC--CCCcEEEEcCCCcchhchHHH
Confidence 122222 257899999998763 44445
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.9e-07 Score=85.11 Aligned_cols=104 Identities=10% Similarity=-0.008 Sum_probs=72.1
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHhC-CC---CCC--CCHHHHhhcCCEEEEeCCCchHH-
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-GV---PTK--ETPFEVAEASDVVITMLPSSSHV- 115 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~~-g~---~~~--~s~~e~~~~aDiVi~~v~~~~~~- 115 (355)
..++|.|||+|.||.+++..|.+.|. +|++|||++++++.+.+. +. ... +++.+.+..+|+||.|+|....-
T Consensus 140 ~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~~~~~~aDivIn~t~~~~~~~ 219 (297)
T 2egg_A 140 DGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFSLAEAETRLAEYDIIINTTSVGMHPR 219 (297)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEECHHHHHHTGGGCSEEEECSCTTCSSC
T ss_pred CCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceeeHHHHHhhhccCCEEEECCCCCCCCC
Confidence 45789999999999999999999998 899999999999888753 22 221 24556678999999999875320
Q ss_pred -HHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHH
Q 018506 116 -LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAV 155 (355)
Q Consensus 116 -~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~ 155 (355)
+.+... ...+ .++.+++|++.. |..+. +.+..
T Consensus 220 ~~~~~i~-~~~l-----~~~~~v~D~~y~-P~~T~-ll~~A 252 (297)
T 2egg_A 220 VEVQPLS-LERL-----RPGVIVSDIIYN-PLETK-WLKEA 252 (297)
T ss_dssp CSCCSSC-CTTC-----CTTCEEEECCCS-SSSCH-HHHHH
T ss_pred CCCCCCC-HHHc-----CCCCEEEEcCCC-CCCCH-HHHHH
Confidence 000000 1122 256799999986 44433 44443
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.48 E-value=9e-07 Score=78.03 Aligned_cols=71 Identities=17% Similarity=0.193 Sum_probs=53.5
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEE-EEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhc
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMA-VHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYN 120 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~-v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~ 120 (355)
|+||||+|+|+|.||+.+++.+.+.++++. ++||+++. ..++...++++++. ++|+||-+.. |..+...+.
T Consensus 1 M~MmkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~~-----~~gv~v~~dl~~l~-~~DVvIDft~-p~a~~~~~~ 72 (243)
T 3qy9_A 1 MASMKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKA-----TTPYQQYQHIADVK-GADVAIDFSN-PNLLFPLLD 72 (243)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC-------CCSCBCSCTTTCT-TCSEEEECSC-HHHHHHHHT
T ss_pred CCceEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCccc-----cCCCceeCCHHHHh-CCCEEEEeCC-hHHHHHHHH
Confidence 357999999999999999999999887754 57887663 36788888888888 9999985543 345555553
|
| >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=98.47 E-value=5.3e-07 Score=84.47 Aligned_cols=106 Identities=11% Similarity=0.192 Sum_probs=76.8
Q ss_pred CCCceEEEEcccHHhHH-HHHHHHHC-CCcEE-EEeCChhHHHHHHhC--CCCCCCCHHHHhhc--CCEEEEeCCCchHH
Q 018506 43 CQFESVGFIGLGNMGFR-MASNLMKA-GYKMA-VHDVNCNVMKMFSDM--GVPTKETPFEVAEA--SDVVITMLPSSSHV 115 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~-ia~~L~~~-G~~V~-v~dr~~~~~~~l~~~--g~~~~~s~~e~~~~--aDiVi~~v~~~~~~ 115 (355)
|+++||||||+|.||.. ++..|.+. +.++. ++|+++++++.+.+. +....++.++++++ .|+|++|+|+....
T Consensus 3 M~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~ 82 (359)
T 3m2t_A 3 LSLIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFISDIPVLDNVPAMLNQVPLDAVVMAGPPQLHF 82 (359)
T ss_dssp CCCEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTSCSCCEESSHHHHHHHSCCSEEEECSCHHHHH
T ss_pred CCcceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEcCCcHHHH
Confidence 45689999999999995 89999876 56765 889999999988874 45678899999875 49999999987665
Q ss_pred HHHhcCCCccccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHh
Q 018506 116 LDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVS 156 (355)
Q Consensus 116 ~~vl~~~~~~l~~~~~~~~~ivi~~-st~~~~~~~~l~~~~~ 156 (355)
+.+.. .++. +..++++. -+....+.+++.+...
T Consensus 83 ~~~~~----al~a----GkhVl~EKPla~~~~e~~~l~~~a~ 116 (359)
T 3m2t_A 83 EMGLL----AMSK----GVNVFVEKPPCATLEELETLIDAAR 116 (359)
T ss_dssp HHHHH----HHHT----TCEEEECSCSCSSHHHHHHHHHHHH
T ss_pred HHHHH----HHHC----CCeEEEECCCcCCHHHHHHHHHHHH
Confidence 55443 2332 11355543 2455667777766654
|
| >2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A | Back alignment and structure |
|---|
Probab=98.47 E-value=7.9e-07 Score=86.51 Aligned_cols=115 Identities=16% Similarity=0.200 Sum_probs=82.4
Q ss_pred CCCCCCCCceEEEEcc----cHHhHHHHHHHHHC--CCcE-EEEeCChhHHHHHHh-CCCC---CCCCHHHHhh--cCCE
Q 018506 38 SQVPSCQFESVGFIGL----GNMGFRMASNLMKA--GYKM-AVHDVNCNVMKMFSD-MGVP---TKETPFEVAE--ASDV 104 (355)
Q Consensus 38 ~~~~~~~~mkIgiIG~----G~mG~~ia~~L~~~--G~~V-~v~dr~~~~~~~l~~-~g~~---~~~s~~e~~~--~aDi 104 (355)
++++.|+++||||||+ |.||...+..|.+. +.+| .++|+++++++.+.+ .|+. ..++.+++++ +.|+
T Consensus 32 ~~~~~m~~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~~~~~d~~ell~~~~vD~ 111 (479)
T 2nvw_A 32 STVPSSRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDM 111 (479)
T ss_dssp GSSGGGCCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSE
T ss_pred CCCCCCCcCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCE
Confidence 3444567789999999 99999999999986 6675 588999999988776 4654 6789999985 6899
Q ss_pred EEEeCCCchHHHHHhcCCCccccCCC-CCC-CeEEEEc-CCCCHHHHHHHHHHHh
Q 018506 105 VITMLPSSSHVLDVYNGPNGLLQGGN-SVR-PQLLIDS-STIDPQTSRNISAAVS 156 (355)
Q Consensus 105 Vi~~v~~~~~~~~vl~~~~~~l~~~~-~~~-~~ivi~~-st~~~~~~~~l~~~~~ 156 (355)
|++|+|+....+.+.. .++.+. .++ ..++++. .+..+.+.+++.+...
T Consensus 112 V~I~tp~~~H~~~~~~----al~aG~~~~~~khVl~EKPla~~~~ea~~l~~~a~ 162 (479)
T 2nvw_A 112 IVVSVKVPEHYEVVKN----ILEHSSQNLNLRYLYVEWALAASVQQAEELYSISQ 162 (479)
T ss_dssp EEECSCHHHHHHHHHH----HHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred EEEcCCcHHHHHHHHH----HHHCCCCcCCceeEEEeCCCcCCHHHHHHHHHHHH
Confidence 9999998766655543 232210 000 2477765 4556777777776654
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=5.2e-07 Score=82.76 Aligned_cols=67 Identities=18% Similarity=0.147 Sum_probs=51.9
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHh---C-------CC--CCCCCHHHHhhcCCEEEEeCCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSD---M-------GV--PTKETPFEVAEASDVVITMLPS 111 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~---~-------g~--~~~~s~~e~~~~aDiVi~~v~~ 111 (355)
+|||+|||+|.||.+++..|+..|+ +|.++|+++++++.... . .. ..+++. ++++++|+||+++..
T Consensus 2 ~~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~a~g~ 80 (309)
T 1ur5_A 2 RKKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIVVTSGA 80 (309)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHCCCCEEEEcCCC
Confidence 3799999999999999999999997 99999999877654211 1 11 223565 778999999999854
Q ss_pred c
Q 018506 112 S 112 (355)
Q Consensus 112 ~ 112 (355)
+
T Consensus 81 p 81 (309)
T 1ur5_A 81 P 81 (309)
T ss_dssp -
T ss_pred C
Confidence 4
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=98.44 E-value=5.2e-07 Score=82.75 Aligned_cols=91 Identities=22% Similarity=0.315 Sum_probs=67.5
Q ss_pred CCceEEEEcccHHhHHHHHHHHHC--CCcEEEEeCChhHHHHHHh-----CCC--CCCCCHHHHhhcCCEEEEeCCCchH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKA--GYKMAVHDVNCNVMKMFSD-----MGV--PTKETPFEVAEASDVVITMLPSSSH 114 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~--G~~V~v~dr~~~~~~~l~~-----~g~--~~~~s~~e~~~~aDiVi~~v~~~~~ 114 (355)
...+|+|||+|.||..++..|.+. ..+|.+|||+ +.+++.+ .|+ ..+ +++++++++|+||+|+|...
T Consensus 120 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~--~a~~la~~l~~~~g~~~~~~-~~~eav~~aDIVi~aT~s~~- 195 (313)
T 3hdj_A 120 RSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY--ASPEILERIGRRCGVPARMA-APADIAAQADIVVTATRSTT- 195 (313)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT--CCHHHHHHHHHHHTSCEEEC-CHHHHHHHCSEEEECCCCSS-
T ss_pred CCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc--HHHHHHHHHHHhcCCeEEEe-CHHHHHhhCCEEEEccCCCC-
Confidence 447899999999999999999873 3679999998 5444433 244 345 89999999999999998752
Q ss_pred HHHHhcCCCccccCCCCCCCeEEEEcCCCCHHH
Q 018506 115 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQT 147 (355)
Q Consensus 115 ~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~ 147 (355)
.++. ..+++ ++.+|+++++..|..
T Consensus 196 --pvl~--~~~l~-----~G~~V~~vGs~~p~~ 219 (313)
T 3hdj_A 196 --PLFA--GQALR-----AGAFVGAIGSSLPHT 219 (313)
T ss_dssp --CSSC--GGGCC-----TTCEEEECCCSSTTC
T ss_pred --cccC--HHHcC-----CCcEEEECCCCCCch
Confidence 2222 12332 567999999988763
|
| >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.44 E-value=6.1e-07 Score=82.08 Aligned_cols=101 Identities=20% Similarity=0.193 Sum_probs=62.3
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHC-CCcEE-EEeCChhHHHHHHhCCCCC--CCCHHHHhhcCCEEEEeCCCchHHHHH
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSDMGVPT--KETPFEVAEASDVVITMLPSSSHVLDV 118 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~-G~~V~-v~dr~~~~~~~l~~~g~~~--~~s~~e~~~~aDiVi~~v~~~~~~~~v 118 (355)
|+++||||||+|+||..++..|.+. ++++. ++|+++++++. .|+.. .+++.+. .++|+|++|+|.....+.+
T Consensus 7 M~~irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~~~---~g~~~~~~~~l~~~-~~~DvViiatp~~~h~~~~ 82 (304)
T 3bio_A 7 DKKIRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVPF---ELQPFRVVSDIEQL-ESVDVALVCSPSREVERTA 82 (304)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC----------CCTTSCEESSGGGS-SSCCEEEECSCHHHHHHHH
T ss_pred CCCCEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHH---cCCCcCCHHHHHhC-CCCCEEEECCCchhhHHHH
Confidence 4568999999999999999999874 56766 78999988765 45432 3344444 6899999999977555444
Q ss_pred hcCCCccccCCCCCCCeEEEEcCCC---CHHHHHHHHHHHh
Q 018506 119 YNGPNGLLQGGNSVRPQLLIDSSTI---DPQTSRNISAAVS 156 (355)
Q Consensus 119 l~~~~~~l~~~~~~~~~ivi~~st~---~~~~~~~l~~~~~ 156 (355)
.. .++ .++.+++.+.. .+.+.+++.+...
T Consensus 83 ~~----al~-----aG~~Vi~ekP~~a~~~~~~~~l~~~a~ 114 (304)
T 3bio_A 83 LE----ILK-----KGICTADSFDIHDGILALRRSLGDAAG 114 (304)
T ss_dssp HH----HHT-----TTCEEEECCCCGGGHHHHHHHHHHHHH
T ss_pred HH----HHH-----cCCeEEECCCCCCCCHHHHHHHHHHHH
Confidence 32 332 34566666442 3444555555543
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.44 E-value=2.3e-07 Score=87.41 Aligned_cols=94 Identities=15% Similarity=0.179 Sum_probs=67.6
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCC-----------------------------CCH
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK-----------------------------ETP 95 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~-----------------------------~s~ 95 (355)
..||+|||+|.+|..+++.+...|.+|++||+++++.+.+.+.|.... .++
T Consensus 190 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~~l 269 (405)
T 4dio_A 190 AAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAALV 269 (405)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHHHHH
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhHhHH
Confidence 478999999999999999999999999999999999888877665321 146
Q ss_pred HHHhhcCCEEEEeCCCch-HHHHHhcCCCccccCCCCCCCeEEEEcCC
Q 018506 96 FEVAEASDVVITMLPSSS-HVLDVYNGPNGLLQGGNSVRPQLLIDSST 142 (355)
Q Consensus 96 ~e~~~~aDiVi~~v~~~~-~~~~vl~~~~~~l~~~~~~~~~ivi~~st 142 (355)
.++++++|+||.++..+. ....++. ++.++.++ ++.+|||++.
T Consensus 270 ~e~l~~aDVVI~tvlipg~~ap~Lvt--~emv~~Mk--~GsVIVDvA~ 313 (405)
T 4dio_A 270 AEHIAKQDIVITTALIPGRPAPRLVT--REMLDSMK--PGSVVVDLAV 313 (405)
T ss_dssp HHHHHTCSEEEECCCCSSSCCCCCBC--HHHHTTSC--TTCEEEETTG
T ss_pred HHHhcCCCEEEECCcCCCCCCCEEec--HHHHhcCC--CCCEEEEEeC
Confidence 778899999999863221 0001111 12333322 5678888864
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=98.43 E-value=5.9e-07 Score=83.11 Aligned_cols=106 Identities=14% Similarity=0.176 Sum_probs=74.4
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCC-Cc-EEEEeCChhHHHHHHhC-CCC-CCCCHHHHhh--cCCEEEEeCCCchHHH
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAG-YK-MAVHDVNCNVMKMFSDM-GVP-TKETPFEVAE--ASDVVITMLPSSSHVL 116 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G-~~-V~v~dr~~~~~~~l~~~-g~~-~~~s~~e~~~--~aDiVi~~v~~~~~~~ 116 (355)
++++||||||+|.||..++..|.+.+ .+ +.++||++++++.+.+. ++. ..++.+++++ +.|+|++|+|+....+
T Consensus 3 m~~~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~ 82 (329)
T 3evn_A 3 LSKVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKYHLPKAYDKLEDMLADESIDVIYVATINQDHYK 82 (329)
T ss_dssp --CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---CCCCSCEESCHHHHHTCTTCCEEEECSCGGGHHH
T ss_pred CCceEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHHHHH
Confidence 45689999999999999999998764 45 45889999998877663 554 6789999987 7999999999876655
Q ss_pred HHhcCCCccccCCCCCCCeEEEEcC-CCCHHHHHHHHHHHh
Q 018506 117 DVYNGPNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVS 156 (355)
Q Consensus 117 ~vl~~~~~~l~~~~~~~~~ivi~~s-t~~~~~~~~l~~~~~ 156 (355)
.+.. .++. +..++++-- +..+.+.+++.+...
T Consensus 83 ~~~~----al~a----Gk~Vl~EKP~a~~~~e~~~l~~~a~ 115 (329)
T 3evn_A 83 VAKA----ALLA----GKHVLVEKPFTLTYDQANELFALAE 115 (329)
T ss_dssp HHHH----HHHT----TCEEEEESSCCSSHHHHHHHHHHHH
T ss_pred HHHH----HHHC----CCeEEEccCCcCCHHHHHHHHHHHH
Confidence 5443 2332 223555543 556777777776654
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=98.41 E-value=2.3e-07 Score=86.75 Aligned_cols=66 Identities=21% Similarity=0.230 Sum_probs=56.6
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCC-------------------------CHHHH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKE-------------------------TPFEV 98 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~-------------------------s~~e~ 98 (355)
...||+|||+|.+|..+++.+...|.+|++|||++++.+.+.+.|..... ++.++
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e~ 262 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALEDA 262 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHHHH
T ss_pred CCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHHHH
Confidence 34689999999999999999999999999999999999888877654322 45678
Q ss_pred hhcCCEEEEeC
Q 018506 99 AEASDVVITML 109 (355)
Q Consensus 99 ~~~aDiVi~~v 109 (355)
++++|+||.++
T Consensus 263 l~~aDIVI~tv 273 (381)
T 3p2y_A 263 ITKFDIVITTA 273 (381)
T ss_dssp HTTCSEEEECC
T ss_pred HhcCCEEEECC
Confidence 89999999986
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=2.7e-07 Score=74.09 Aligned_cols=69 Identities=17% Similarity=0.303 Sum_probs=51.8
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCC----CCCHHH---H-hhcCCEEEEeCCCc
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT----KETPFE---V-AEASDVVITMLPSS 112 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~----~~s~~e---~-~~~aDiVi~~v~~~ 112 (355)
++++|.|+|+|.+|..++..|.+.|++|+++++++++.+.+.+.+... ..+.+. + ...+|+||.+++.+
T Consensus 5 ~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~ 81 (144)
T 2hmt_A 5 KNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGAN 81 (144)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSC
T ss_pred cCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCc
Confidence 456799999999999999999999999999999999887776544321 112222 1 45688888888764
|
| >3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X | Back alignment and structure |
|---|
Probab=98.39 E-value=1.7e-06 Score=80.06 Aligned_cols=104 Identities=14% Similarity=0.149 Sum_probs=77.1
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCC---c-EEEEeCChhHHHHHHh-CCC-CCCCCHHHHhh--cCCEEEEeCCCchHHH
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGY---K-MAVHDVNCNVMKMFSD-MGV-PTKETPFEVAE--ASDVVITMLPSSSHVL 116 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~---~-V~v~dr~~~~~~~l~~-~g~-~~~~s~~e~~~--~aDiVi~~v~~~~~~~ 116 (355)
++||||||+|.||..++..|.+.+. + |.++||++++++.+.+ .++ ...++.+++++ +.|+|++|+|+....+
T Consensus 2 ~~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~ 81 (334)
T 3ohs_X 2 ALRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIPKAYGSYEELAKDPNVEVAYVGTQHPQHKA 81 (334)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHTCSCEESSHHHHHHCTTCCEEEECCCGGGHHH
T ss_pred ccEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHHHHH
Confidence 4799999999999999999987643 4 5688999999988876 455 46789999987 6999999999886665
Q ss_pred HHhcCCCccccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHh
Q 018506 117 DVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVS 156 (355)
Q Consensus 117 ~vl~~~~~~l~~~~~~~~~ivi~~-st~~~~~~~~l~~~~~ 156 (355)
.+.. .++. +..++++- -+....+.+++.+...
T Consensus 82 ~~~~----al~~----GkhVl~EKP~a~~~~e~~~l~~~a~ 114 (334)
T 3ohs_X 82 AVML----CLAA----GKAVLCEKPMGVNAAEVREMVTEAR 114 (334)
T ss_dssp HHHH----HHHT----TCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred HHHH----HHhc----CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 5443 2332 22356553 3556777777777654
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.39 E-value=2.7e-07 Score=82.11 Aligned_cols=90 Identities=13% Similarity=0.084 Sum_probs=66.6
Q ss_pred eEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHhC-CCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC-C
Q 018506 47 SVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP-N 123 (355)
Q Consensus 47 kIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~~-g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~-~ 123 (355)
+|+|||+|.||.+++..|.+.|. +|+++||++++++.+.+. +.....++.++++++|+||.++|.... .+ ...+ .
T Consensus 110 ~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~aDiVInatp~gm~-p~-~~~i~~ 187 (253)
T 3u62_A 110 PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKIFSLDQLDEVVKKAKSLFNTTSVGMK-GE-ELPVSD 187 (253)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSCEEEEGGGHHHHHHTCSEEEECSSTTTT-SC-CCSCCH
T ss_pred eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcccCCHHHHHhhhcCCCEEEECCCCCCC-CC-CCCCCH
Confidence 89999999999999999999998 899999999999888653 222345677888899999999975311 00 0001 1
Q ss_pred ccccCCCCCCCeEEEEcCCC
Q 018506 124 GLLQGGNSVRPQLLIDSSTI 143 (355)
Q Consensus 124 ~~l~~~~~~~~~ivi~~st~ 143 (355)
..+. ++.+++|+...
T Consensus 188 ~~l~-----~~~~V~Divy~ 202 (253)
T 3u62_A 188 DSLK-----NLSLVYDVIYF 202 (253)
T ss_dssp HHHT-----TCSEEEECSSS
T ss_pred HHhC-----cCCEEEEeeCC
Confidence 1221 45689999887
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=98.37 E-value=1.9e-06 Score=80.72 Aligned_cols=107 Identities=15% Similarity=0.178 Sum_probs=75.7
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHC-CCcE-EEEeCChhHHHHHHh-CC----CCCCCCHHHHhh--cCCEEEEeCCCch
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKA-GYKM-AVHDVNCNVMKMFSD-MG----VPTKETPFEVAE--ASDVVITMLPSSS 113 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~-G~~V-~v~dr~~~~~~~l~~-~g----~~~~~s~~e~~~--~aDiVi~~v~~~~ 113 (355)
++++||||||+|.||..++..|.+. ++++ .++|+++++.+.+.+ .+ ....++.+++++ +.|+|++|+|+..
T Consensus 4 ~~~~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~ 83 (362)
T 1ydw_A 4 ETQIRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSL 83 (362)
T ss_dssp --CEEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGG
T ss_pred CCceEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeCCHHHHhcCCCCCEEEEcCChHH
Confidence 4568999999999999999999875 4565 588999999888765 34 345678999886 5899999999875
Q ss_pred HHHHHhcCCCccccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhh
Q 018506 114 HVLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSN 157 (355)
Q Consensus 114 ~~~~vl~~~~~~l~~~~~~~~~ivi~~-st~~~~~~~~l~~~~~~ 157 (355)
..+.+.. .++. +..++++. .+....+.+++.+...+
T Consensus 84 h~~~~~~----al~a----Gk~V~~EKP~a~~~~e~~~l~~~a~~ 120 (362)
T 1ydw_A 84 HVEWAIK----AAEK----GKHILLEKPVAMNVTEFDKIVDACEA 120 (362)
T ss_dssp HHHHHHH----HHTT----TCEEEECSSCSSSHHHHHHHHHHHHT
T ss_pred HHHHHHH----HHHC----CCeEEEecCCcCCHHHHHHHHHHHHH
Confidence 5544432 3332 11355543 35567777777776653
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.1e-06 Score=80.80 Aligned_cols=70 Identities=17% Similarity=0.245 Sum_probs=54.1
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHH----HHhC------CCCCC-CCHHHHhhcCCEEEEeCC
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKM----FSDM------GVPTK-ETPFEVAEASDVVITMLP 110 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~----l~~~------g~~~~-~s~~e~~~~aDiVi~~v~ 110 (355)
|++|||+|||+|.||.+++..|+..|+ +|.++|+++++++. +.+. ..... ++..+++++||+||++..
T Consensus 3 m~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d~~a~~~aDvVIi~ag 82 (321)
T 3p7m_A 3 MARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTNDYKDLENSDVVIVTAG 82 (321)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEECCS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCCHHHHCCCCEEEEcCC
Confidence 567899999999999999999999988 99999999887642 3221 23332 234578899999999964
Q ss_pred Cc
Q 018506 111 SS 112 (355)
Q Consensus 111 ~~ 112 (355)
.+
T Consensus 83 ~p 84 (321)
T 3p7m_A 83 VP 84 (321)
T ss_dssp CC
T ss_pred cC
Confidence 43
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=6.2e-07 Score=82.57 Aligned_cols=70 Identities=17% Similarity=0.179 Sum_probs=53.6
Q ss_pred CCCCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHH----HHHh------CCCCC--CCCHHHHhhcCCEEEEe
Q 018506 42 SCQFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMK----MFSD------MGVPT--KETPFEVAEASDVVITM 108 (355)
Q Consensus 42 ~~~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~----~l~~------~g~~~--~~s~~e~~~~aDiVi~~ 108 (355)
.|++|||+|||+|.||.+++..|+..|+ +|.+||+++++++ .+.+ ..... +++. +++++||+||++
T Consensus 4 ~m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~-~a~~~aDiVIia 82 (324)
T 3gvi_A 4 SMARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY-AAIEGADVVIVT 82 (324)
T ss_dssp --CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG-GGGTTCSEEEEC
T ss_pred CCcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH-HHHCCCCEEEEc
Confidence 3567899999999999999999999999 9999999988764 2222 12332 3444 888999999999
Q ss_pred CCCc
Q 018506 109 LPSS 112 (355)
Q Consensus 109 v~~~ 112 (355)
...+
T Consensus 83 ag~p 86 (324)
T 3gvi_A 83 AGVP 86 (324)
T ss_dssp CSCC
T ss_pred cCcC
Confidence 7533
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=3.7e-07 Score=82.17 Aligned_cols=96 Identities=15% Similarity=0.071 Sum_probs=66.7
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHhCC-CCCCCCHHHHhhcCCEEEEeCCCch--HHHHHh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMG-VPTKETPFEVAEASDVVITMLPSSS--HVLDVY 119 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~~g-~~~~~s~~e~~~~aDiVi~~v~~~~--~~~~vl 119 (355)
..+++.|||+|.||.+++..|.+.|. +|++++|++++++.+.+.. .....++.+++.++|+||.++|... .....+
T Consensus 116 ~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~~~~l 195 (277)
T 3don_A 116 EDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNINKINLSHAESHLDEFDIIINTTPAGMNGNTDSVI 195 (277)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCSCCEEECHHHHHHTGGGCSEEEECCC-------CCSS
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhcccccHhhHHHHhcCCCEEEECccCCCCCCCcCCC
Confidence 34689999999999999999999998 8999999999987776421 1122345566789999999998641 111111
Q ss_pred cCCCccccCCCCCCCeEEEEcCCCCHH
Q 018506 120 NGPNGLLQGGNSVRPQLLIDSSTIDPQ 146 (355)
Q Consensus 120 ~~~~~~l~~~~~~~~~ivi~~st~~~~ 146 (355)
. ...+ .++.+++|+...+..
T Consensus 196 -~-~~~l-----~~~~~V~D~vY~P~~ 215 (277)
T 3don_A 196 -S-LNRL-----ASHTLVSDIVYNPYK 215 (277)
T ss_dssp -C-CTTC-----CSSCEEEESCCSSSS
T ss_pred -C-HHHc-----CCCCEEEEecCCCCC
Confidence 1 1122 245799999987443
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=1.2e-06 Score=84.91 Aligned_cols=92 Identities=16% Similarity=0.155 Sum_probs=73.0
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHH-HHhcCC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVL-DVYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~-~vl~~~ 122 (355)
.-++|+|||+|.||..+++.+...|.+|+++|+++.+.+...+.|+. ..++.++++.+|+||.++++...+. ..+.
T Consensus 273 ~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~Ga~-~~~l~e~l~~aDvVi~atgt~~~i~~~~l~-- 349 (494)
T 3ce6_A 273 GGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFD-VVTVEEAIGDADIVVTATGNKDIIMLEHIK-- 349 (494)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCE-ECCHHHHGGGCSEEEECSSSSCSBCHHHHH--
T ss_pred CcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCE-EecHHHHHhCCCEEEECCCCHHHHHHHHHH--
Confidence 45789999999999999999999999999999999998777777876 3578888999999999998764332 2221
Q ss_pred CccccCCCCCCCeEEEEcCCCCH
Q 018506 123 NGLLQGGNSVRPQLLIDSSTIDP 145 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~~ 145 (355)
.+ .++.++++.+....
T Consensus 350 --~m-----k~ggilvnvG~~~~ 365 (494)
T 3ce6_A 350 --AM-----KDHAILGNIGHFDN 365 (494)
T ss_dssp --HS-----CTTCEEEECSSSGG
T ss_pred --hc-----CCCcEEEEeCCCCC
Confidence 22 24568999988654
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=1.9e-06 Score=79.18 Aligned_cols=70 Identities=17% Similarity=0.273 Sum_probs=53.6
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCC--cEEEEeCChhHHHH----HHh------CCCCCCCCHHHHhhcCCEEEEeCC
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMKM----FSD------MGVPTKETPFEVAEASDVVITMLP 110 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~--~V~v~dr~~~~~~~----l~~------~g~~~~~s~~e~~~~aDiVi~~v~ 110 (355)
+..|||+|||+|.+|.+++..|+..|+ +|.++|+++++++. +.+ .......+..+++++||+||++.+
T Consensus 4 m~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a~~~aDvVvi~ag 83 (317)
T 3d0o_A 4 FKGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHDADLVVICAG 83 (317)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGTTCSEEEECCC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHHhCCCCEEEECCC
Confidence 456899999999999999999998884 89999999876653 222 112223355778899999999986
Q ss_pred Cc
Q 018506 111 SS 112 (355)
Q Consensus 111 ~~ 112 (355)
.+
T Consensus 84 ~~ 85 (317)
T 3d0o_A 84 AA 85 (317)
T ss_dssp CC
T ss_pred CC
Confidence 54
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=1.3e-06 Score=80.31 Aligned_cols=70 Identities=19% Similarity=0.146 Sum_probs=52.6
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCC--cEEEEeCChhHHHHH----HhC------CCCCCCCHHHHhhcCCEEEEeCC
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMKMF----SDM------GVPTKETPFEVAEASDVVITMLP 110 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~--~V~v~dr~~~~~~~l----~~~------g~~~~~s~~e~~~~aDiVi~~v~ 110 (355)
..++||+|||+|.||.+++..|...|. +|.++|+++++++.. .+. ......+..+++++||+||++.+
T Consensus 4 ~~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~al~~aDvViia~~ 83 (316)
T 1ldn_A 4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAG 83 (316)
T ss_dssp TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCS
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCcHHHhCCCCEEEEcCC
Confidence 456899999999999999999998775 899999998765532 221 11112345677899999999976
Q ss_pred Cc
Q 018506 111 SS 112 (355)
Q Consensus 111 ~~ 112 (355)
.+
T Consensus 84 ~~ 85 (316)
T 1ldn_A 84 AN 85 (316)
T ss_dssp CC
T ss_pred CC
Confidence 54
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.30 E-value=7.9e-07 Score=85.89 Aligned_cols=68 Identities=15% Similarity=0.089 Sum_probs=53.8
Q ss_pred CceEEEEcccHH-hHHHHHHHHHC-----CCcEEEEeCChhHHHHHHhC------------CCCCCCCHHHHhhcCCEEE
Q 018506 45 FESVGFIGLGNM-GFRMASNLMKA-----GYKMAVHDVNCNVMKMFSDM------------GVPTKETPFEVAEASDVVI 106 (355)
Q Consensus 45 ~mkIgiIG~G~m-G~~ia~~L~~~-----G~~V~v~dr~~~~~~~l~~~------------g~~~~~s~~e~~~~aDiVi 106 (355)
.|||+|||+|.+ |.+++..|++. +++|.+||+++++++...+. .+..+++..+++++||+||
T Consensus 28 ~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~~~~~I~~t~D~~eal~~AD~VV 107 (472)
T 1u8x_X 28 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVM 107 (472)
T ss_dssp CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCCEEEEECCHHHHHcCCCEEE
Confidence 469999999999 66688888887 67899999999886653221 1233567788999999999
Q ss_pred EeCCCc
Q 018506 107 TMLPSS 112 (355)
Q Consensus 107 ~~v~~~ 112 (355)
++++.+
T Consensus 108 iaag~~ 113 (472)
T 1u8x_X 108 AHIRVG 113 (472)
T ss_dssp ECCCTT
T ss_pred EcCCCc
Confidence 999874
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.1e-06 Score=76.23 Aligned_cols=68 Identities=15% Similarity=0.287 Sum_probs=54.4
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh-CCCCC----CCC---HHHH-hhcCCEEEEeCCCch
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-MGVPT----KET---PFEV-AEASDVVITMLPSSS 113 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~-~g~~~----~~s---~~e~-~~~aDiVi~~v~~~~ 113 (355)
|||.|+|+|.+|..+++.|.+.|++|+++|+++++++.+.+ .+... .++ +.++ ++++|+||++++++.
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~ 77 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPRDE 77 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSCHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecCCcH
Confidence 78999999999999999999999999999999999988764 34321 122 2232 468999999998764
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=98.28 E-value=7.4e-07 Score=81.37 Aligned_cols=65 Identities=15% Similarity=0.236 Sum_probs=48.7
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC--cEEEEeCChhH---HHHHHh---CCCCCCCCHHHHhhcCCEEEEeC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNV---MKMFSD---MGVPTKETPFEVAEASDVVITML 109 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~--~V~v~dr~~~~---~~~l~~---~g~~~~~s~~e~~~~aDiVi~~v 109 (355)
.++||+|||+|.||..++..|+.+|+ +|.++|++++. +..+.. ..+..+.+. +++++||+||++.
T Consensus 13 ~~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~~~~i~~t~d~-~~l~~aD~Vi~aa 85 (303)
T 2i6t_A 13 TVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEISKDL-SASAHSKVVIFTV 85 (303)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHTCTTEEEESCG-GGGTTCSEEEECC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhcCCCeEEeCCH-HHHCCCCEEEEcC
Confidence 45899999999999999999999999 99999998752 222222 123344566 7789999999997
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.27 E-value=2e-06 Score=79.17 Aligned_cols=70 Identities=14% Similarity=0.130 Sum_probs=48.9
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC--cEEEEeCChhHHH----HHHhC-----CCCCCCCHHHHhhcCCEEEEeCCCc
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMK----MFSDM-----GVPTKETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~--~V~v~dr~~~~~~----~l~~~-----g~~~~~s~~e~~~~aDiVi~~v~~~ 112 (355)
++|||+|||+|.+|.+++..|+..|+ +|.++|+++++++ .+.+. ......+..+++++||+||++++.+
T Consensus 6 ~~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~~g~p 85 (318)
T 1y6j_A 6 SRSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGAN 85 (318)
T ss_dssp -CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC-
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCHHHhCCCCEEEEcCCCC
Confidence 34899999999999999999999988 8999999987643 23221 1112223467789999999998765
Q ss_pred h
Q 018506 113 S 113 (355)
Q Consensus 113 ~ 113 (355)
.
T Consensus 86 ~ 86 (318)
T 1y6j_A 86 R 86 (318)
T ss_dssp -
T ss_pred C
Confidence 3
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=9.2e-07 Score=80.31 Aligned_cols=66 Identities=14% Similarity=0.262 Sum_probs=52.3
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCC--cEEEEeCChhHHHH----HHh----C--C--CCCCCCHHHHhhcCCEEEEeCCC
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMKM----FSD----M--G--VPTKETPFEVAEASDVVITMLPS 111 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~--~V~v~dr~~~~~~~----l~~----~--g--~~~~~s~~e~~~~aDiVi~~v~~ 111 (355)
|||+|||+|.||.+++..|+..|+ +|.+||+++++++. +.+ . . +..+++ .++++++|+||++...
T Consensus 1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDiVViaag~ 79 (294)
T 1oju_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVTAGL 79 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEECCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCCCCEEEECCCC
Confidence 799999999999999999999998 89999999988641 221 1 1 222345 7888999999999754
Q ss_pred c
Q 018506 112 S 112 (355)
Q Consensus 112 ~ 112 (355)
+
T Consensus 80 ~ 80 (294)
T 1oju_A 80 A 80 (294)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=4.2e-06 Score=80.61 Aligned_cols=107 Identities=12% Similarity=0.099 Sum_probs=75.6
Q ss_pred CCCCceEEEEcccHHhHHHHHHHHHC-CCcE-EEEeCChhHHHHHHh----CC---CCCCC----CHHHHhh--cCCEEE
Q 018506 42 SCQFESVGFIGLGNMGFRMASNLMKA-GYKM-AVHDVNCNVMKMFSD----MG---VPTKE----TPFEVAE--ASDVVI 106 (355)
Q Consensus 42 ~~~~mkIgiIG~G~mG~~ia~~L~~~-G~~V-~v~dr~~~~~~~l~~----~g---~~~~~----s~~e~~~--~aDiVi 106 (355)
.++++||||||+|.||...+..|.+. +.+| .++|+++++++.+.+ .| ....+ +.+++++ +.|+|+
T Consensus 17 ~~~~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~~~vD~V~ 96 (444)
T 2ixa_A 17 NPKKVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKDKNIDAVF 96 (444)
T ss_dssp --CCEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTCTTCCEEE
T ss_pred CCCCceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcCCCCCEEE
Confidence 35678999999999999999999875 5664 588999999887654 34 34566 8999986 589999
Q ss_pred EeCCCchHHHHHhcCCCccccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHh
Q 018506 107 TMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVS 156 (355)
Q Consensus 107 ~~v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~-st~~~~~~~~l~~~~~ 156 (355)
+|+|+....+.++. .++. ...++++. .+....+.+++.+...
T Consensus 97 i~tp~~~h~~~~~~----al~a----GkhV~~EKP~a~~~~ea~~l~~~a~ 139 (444)
T 2ixa_A 97 VSSPWEWHHEHGVA----AMKA----GKIVGMEVSGAITLEECWDYVKVSE 139 (444)
T ss_dssp ECCCGGGHHHHHHH----HHHT----TCEEEECCCCCSSHHHHHHHHHHHH
T ss_pred EcCCcHHHHHHHHH----HHHC----CCeEEEeCCCcCCHHHHHHHHHHHH
Confidence 99998876665543 2332 11355543 3445667777766554
|
| >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.26 E-value=4.4e-06 Score=78.31 Aligned_cols=104 Identities=19% Similarity=0.225 Sum_probs=72.3
Q ss_pred CCCceEEEEcccHHhHH-HHHHHHHC-CCcE-EEEeCChhHHHHHHhCCCCCCCCHHHHhh--cCCEEEEeCCCchHHHH
Q 018506 43 CQFESVGFIGLGNMGFR-MASNLMKA-GYKM-AVHDVNCNVMKMFSDMGVPTKETPFEVAE--ASDVVITMLPSSSHVLD 117 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~-ia~~L~~~-G~~V-~v~dr~~~~~~~l~~~g~~~~~s~~e~~~--~aDiVi~~v~~~~~~~~ 117 (355)
++++||||||+|.||.. .+..|.+. +.+| .++|+++++++. ...+....++.+++++ +.|+|++|+|+....+.
T Consensus 5 ~~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~-~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~H~~~ 83 (364)
T 3e82_A 5 NNTINIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVKR-DLPDVTVIASPEAAVQHPDVDLVVIASPNATHAPL 83 (364)
T ss_dssp --CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHH-HCTTSEEESCHHHHHTCTTCSEEEECSCGGGHHHH
T ss_pred CCcceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHh-hCCCCcEECCHHHHhcCCCCCEEEEeCChHHHHHH
Confidence 35689999999999997 67777665 5676 488999988652 1235667789999987 78999999998866665
Q ss_pred HhcCCCccccCCCCCCCeEEEEcC--CCCHHHHHHHHHHHh
Q 018506 118 VYNGPNGLLQGGNSVRPQLLIDSS--TIDPQTSRNISAAVS 156 (355)
Q Consensus 118 vl~~~~~~l~~~~~~~~~ivi~~s--t~~~~~~~~l~~~~~ 156 (355)
+.. .++ .|+.|+... +....+.+++.+...
T Consensus 84 ~~~----al~-----aGk~Vl~EKPla~~~~e~~~l~~~a~ 115 (364)
T 3e82_A 84 ARL----ALN-----AGKHVVVDKPFTLDMQEARELIALAE 115 (364)
T ss_dssp HHH----HHH-----TTCEEEECSCSCSSHHHHHHHHHHHH
T ss_pred HHH----HHH-----CCCcEEEeCCCcCCHHHHHHHHHHHH
Confidence 543 233 223344333 456777777776654
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=3.5e-06 Score=79.40 Aligned_cols=70 Identities=19% Similarity=0.208 Sum_probs=57.8
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh-CCCCC------CCCHHHHhhcCCEEEEeCCCc
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-MGVPT------KETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~-~g~~~------~~s~~e~~~~aDiVi~~v~~~ 112 (355)
....+|+|||+|.+|..+++.+...|.+|+++||++++.+.+.+ .|... ..++.+.++.+|+||.|++.+
T Consensus 166 l~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~~aDvVi~~~~~p 242 (377)
T 2vhw_A 166 VEPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVLVP 242 (377)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSSEEEECCHHHHHHHHHHCSEEEECCCCT
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCeeEeccCCHHHHHHHHcCCCEEEECCCcC
Confidence 34578999999999999999999999999999999999887766 45442 234567778999999998654
|
| >3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.24 E-value=6.1e-06 Score=78.83 Aligned_cols=106 Identities=14% Similarity=0.173 Sum_probs=76.9
Q ss_pred CCCceEEEEcccH---HhHHHHHHHHHCC-CcEE--EEeCChhHHHHHHh-CCC---CCCCCHHHHhhc-------CCEE
Q 018506 43 CQFESVGFIGLGN---MGFRMASNLMKAG-YKMA--VHDVNCNVMKMFSD-MGV---PTKETPFEVAEA-------SDVV 105 (355)
Q Consensus 43 ~~~mkIgiIG~G~---mG~~ia~~L~~~G-~~V~--v~dr~~~~~~~l~~-~g~---~~~~s~~e~~~~-------aDiV 105 (355)
|+++||||||+|. ||...+..+...+ ++++ ++|+++++++.+.+ .|+ ...++.++++++ .|+|
T Consensus 35 m~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V 114 (417)
T 3v5n_A 35 QKRIRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRELGLDPSRVYSDFKEMAIREAKLKNGIEAV 114 (417)
T ss_dssp CCCEEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHHTCCGGGBCSCHHHHHHHHHHCTTCCSEE
T ss_pred CCcceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHcCCCcccccCCHHHHHhcccccCCCCcEE
Confidence 5668999999999 9999999888776 5654 67999999988766 466 477899999876 8999
Q ss_pred EEeCCCchHHHHHhcCCCccccCCCCCCCeEEEEcC-CCCHHHHHHHHHHHh
Q 018506 106 ITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVS 156 (355)
Q Consensus 106 i~~v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~s-t~~~~~~~~l~~~~~ 156 (355)
++|+|+....+-+.. .++. +..++++.- +....+.+++.+...
T Consensus 115 ~I~tp~~~H~~~~~~----al~a----GkhVl~EKPla~~~~ea~~l~~~a~ 158 (417)
T 3v5n_A 115 AIVTPNHVHYAAAKE----FLKR----GIHVICDKPLTSTLADAKKLKKAAD 158 (417)
T ss_dssp EECSCTTSHHHHHHH----HHTT----TCEEEEESSSCSSHHHHHHHHHHHH
T ss_pred EECCCcHHHHHHHHH----HHhC----CCeEEEECCCcCCHHHHHHHHHHHH
Confidence 999998866655443 2322 223555532 455677777776654
|
| >3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=98.24 E-value=5e-06 Score=78.94 Aligned_cols=108 Identities=13% Similarity=0.190 Sum_probs=78.3
Q ss_pred CCCCceEEEEcccH---HhHHHHHHHHHCC-CcEE--EEeCChhHHHHHHh-CCC---CCCCCHHHHhhc-------CCE
Q 018506 42 SCQFESVGFIGLGN---MGFRMASNLMKAG-YKMA--VHDVNCNVMKMFSD-MGV---PTKETPFEVAEA-------SDV 104 (355)
Q Consensus 42 ~~~~mkIgiIG~G~---mG~~ia~~L~~~G-~~V~--v~dr~~~~~~~l~~-~g~---~~~~s~~e~~~~-------aDi 104 (355)
.|+++||||||+|. ||...+..+...+ ++++ ++|+++++++.+.+ .|+ ...+|.++++++ .|+
T Consensus 9 ~m~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~ 88 (398)
T 3dty_A 9 IPQPIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLGVDSERCYADYLSMFEQEARRADGIQA 88 (398)
T ss_dssp SCSCEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHTTCCGGGBCSSHHHHHHHHTTCTTCCSE
T ss_pred ccCcceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhCCCcceeeCCHHHHHhcccccCCCCCE
Confidence 35678999999999 9999999888765 5665 67999999988765 576 577899999865 899
Q ss_pred EEEeCCCchHHHHHhcCCCccccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhh
Q 018506 105 VITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSN 157 (355)
Q Consensus 105 Vi~~v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~-st~~~~~~~~l~~~~~~ 157 (355)
|++|+|+....+.+.. .++. +..++++- -+....+.+++.+...+
T Consensus 89 V~i~tp~~~H~~~~~~----al~a----GkhVl~EKPla~~~~ea~~l~~~a~~ 134 (398)
T 3dty_A 89 VSIATPNGTHYSITKA----ALEA----GLHVVCEKPLCFTVEQAENLRELSHK 134 (398)
T ss_dssp EEEESCGGGHHHHHHH----HHHT----TCEEEECSCSCSCHHHHHHHHHHHHH
T ss_pred EEECCCcHHHHHHHHH----HHHC----CCeEEEeCCCcCCHHHHHHHHHHHHH
Confidence 9999998866655443 2322 11344432 24456677777766543
|
| >1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=1.3e-06 Score=80.56 Aligned_cols=74 Identities=15% Similarity=0.169 Sum_probs=56.1
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHC-CCc-EEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHh
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKA-GYK-MAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVY 119 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~-G~~-V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl 119 (355)
|+++||+|||+|+||..++..|.+. +.+ |.++|+++++ .+. .++...++.++++.++|+||+|+|.....+.+.
T Consensus 1 M~~irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~--~~~-~gv~~~~d~~~ll~~~DvViiatp~~~h~~~~~ 76 (320)
T 1f06_A 1 MTNIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL--DTK-TPVFDVADVDKHADDVDVLFLCMGSATDIPEQA 76 (320)
T ss_dssp CCCEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC--SSS-SCEEEGGGGGGTTTTCSEEEECSCTTTHHHHHH
T ss_pred CCCCEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHH--hhc-CCCceeCCHHHHhcCCCEEEEcCCcHHHHHHHH
Confidence 3568999999999999999999886 456 4688998665 222 344455677777778999999998875655554
|
| >3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A | Back alignment and structure |
|---|
Probab=98.24 E-value=2.8e-06 Score=81.75 Aligned_cols=109 Identities=16% Similarity=0.143 Sum_probs=78.9
Q ss_pred CCceEEEEcc----cHHhHHHHHHHHHC--CCcE-EEEeCChhHHHHHHh-CCCC---CCCCHHHHhh--cCCEEEEeCC
Q 018506 44 QFESVGFIGL----GNMGFRMASNLMKA--GYKM-AVHDVNCNVMKMFSD-MGVP---TKETPFEVAE--ASDVVITMLP 110 (355)
Q Consensus 44 ~~mkIgiIG~----G~mG~~ia~~L~~~--G~~V-~v~dr~~~~~~~l~~-~g~~---~~~s~~e~~~--~aDiVi~~v~ 110 (355)
+++||||||+ |.||...+..|.+. +.+| .++|+++++++.+.+ .|+. ..++.+++++ +.|+|++|+|
T Consensus 19 ~~irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~ll~~~~vD~V~i~tp 98 (438)
T 3btv_A 19 APIRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRLKLSNATAFPTLESFASSSTIDMIVIAIQ 98 (438)
T ss_dssp CCEEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTCTTCEEESSHHHHHHCSSCSEEEECSC
T ss_pred CCCEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEeCC
Confidence 4579999999 99999999999986 6675 688999999888776 4554 6789999986 5899999999
Q ss_pred CchHHHHHhcCCCccccCCC-CCC-CeEEEEc-CCCCHHHHHHHHHHHh
Q 018506 111 SSSHVLDVYNGPNGLLQGGN-SVR-PQLLIDS-STIDPQTSRNISAAVS 156 (355)
Q Consensus 111 ~~~~~~~vl~~~~~~l~~~~-~~~-~~ivi~~-st~~~~~~~~l~~~~~ 156 (355)
+....+.+... ++.+. .++ ..++++. .+....+.+++.+...
T Consensus 99 ~~~H~~~~~~a----l~aG~~~~~~khVl~EKP~a~~~~e~~~l~~~a~ 143 (438)
T 3btv_A 99 VASHYEVVMPL----LEFSKNNPNLKYLFVEWALACSLDQAESIYKAAA 143 (438)
T ss_dssp HHHHHHHHHHH----HHHGGGCTTCCEEEEESSCCSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHH----HHCCCCcccceeEEecCcccCCHHHHHHHHHHHH
Confidence 87666555432 22110 000 2467763 4556777777777654
|
| >3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.23 E-value=7.3e-06 Score=76.74 Aligned_cols=106 Identities=15% Similarity=0.180 Sum_probs=75.3
Q ss_pred CCCceEEEEcccHHhH-HHHHHHHHCCCcE-EEEeCChhHHHHHHh-CC-CCCCCCHHHHhhc--CCEEEEeCCCchHHH
Q 018506 43 CQFESVGFIGLGNMGF-RMASNLMKAGYKM-AVHDVNCNVMKMFSD-MG-VPTKETPFEVAEA--SDVVITMLPSSSHVL 116 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~-~ia~~L~~~G~~V-~v~dr~~~~~~~l~~-~g-~~~~~s~~e~~~~--aDiVi~~v~~~~~~~ 116 (355)
|+++||||||+|.+|. .++..+...+.++ .++|+++++++.+.+ .+ ....++.++++++ .|+|++|+|+....+
T Consensus 24 m~~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~~H~~ 103 (361)
T 3u3x_A 24 MDELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYADARRIATAEEILEDENIGLIVSAAVSSERAE 103 (361)
T ss_dssp --CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSSSCCEESCHHHHHTCTTCCEEEECCCHHHHHH
T ss_pred ccCcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChHHHHH
Confidence 4568999999999995 5777777788884 588999999988876 44 5678899999875 899999999876655
Q ss_pred HHhcCCCccccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHh
Q 018506 117 DVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVS 156 (355)
Q Consensus 117 ~vl~~~~~~l~~~~~~~~~ivi~~-st~~~~~~~~l~~~~~ 156 (355)
.+.. .++. +..++++- -+....+.+++.+...
T Consensus 104 ~~~~----al~a----GkhVl~EKPla~~~~ea~~l~~~a~ 136 (361)
T 3u3x_A 104 LAIR----AMQH----GKDVLVDKPGMTSFDQLAKLRRVQA 136 (361)
T ss_dssp HHHH----HHHT----TCEEEEESCSCSSHHHHHHHHHHHH
T ss_pred HHHH----HHHC----CCeEEEeCCCCCCHHHHHHHHHHHH
Confidence 5443 2332 12355543 2445667777766554
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=1.4e-06 Score=80.18 Aligned_cols=69 Identities=25% Similarity=0.303 Sum_probs=54.4
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC--cEEEEeCChhHHHH----HHhC------CCCCCCCHHHHhhcCCEEEEeCCC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMKM----FSDM------GVPTKETPFEVAEASDVVITMLPS 111 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~--~V~v~dr~~~~~~~----l~~~------g~~~~~s~~e~~~~aDiVi~~v~~ 111 (355)
..|||+|||+|.||.+++..|+..|+ +|.++|+++++++. +.+. +....++..+++++||+||++...
T Consensus 4 ~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~~aDvVvi~ag~ 83 (326)
T 3pqe_A 4 HVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDADIVCICAGA 83 (326)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGTTCSEEEECCSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHHHhCCCCEEEEeccc
Confidence 45899999999999999999999987 89999999988765 4432 222234445788999999999754
Q ss_pred c
Q 018506 112 S 112 (355)
Q Consensus 112 ~ 112 (355)
+
T Consensus 84 p 84 (326)
T 3pqe_A 84 N 84 (326)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.22 E-value=1.3e-06 Score=84.47 Aligned_cols=69 Identities=20% Similarity=0.299 Sum_probs=53.7
Q ss_pred CCceEEEEcccHH--hHHHHHHHHHC----CCcEEEEeCChhHHHHHHh--------C----CCCCCCCHHHHhhcCCEE
Q 018506 44 QFESVGFIGLGNM--GFRMASNLMKA----GYKMAVHDVNCNVMKMFSD--------M----GVPTKETPFEVAEASDVV 105 (355)
Q Consensus 44 ~~mkIgiIG~G~m--G~~ia~~L~~~----G~~V~v~dr~~~~~~~l~~--------~----g~~~~~s~~e~~~~aDiV 105 (355)
++|||+|||+|.| |.+++..|+.. |++|++||+++++++...+ . .+..+++..+++++||+|
T Consensus 2 ~~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal~dAD~V 81 (480)
T 1obb_A 2 PSVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFV 81 (480)
T ss_dssp CCCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEECCHHHHhCCCCEE
Confidence 4689999999996 57778888754 8999999999988665322 1 133456777889999999
Q ss_pred EEeCCCc
Q 018506 106 ITMLPSS 112 (355)
Q Consensus 106 i~~v~~~ 112 (355)
|++++..
T Consensus 82 Iiaagv~ 88 (480)
T 1obb_A 82 INTAMVG 88 (480)
T ss_dssp EECCCTT
T ss_pred EECCCcc
Confidence 9999863
|
| >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=98.22 E-value=6.9e-06 Score=76.60 Aligned_cols=105 Identities=15% Similarity=0.275 Sum_probs=74.7
Q ss_pred CCceEEEEcccHHhHH-HHHHHHHC-CCcE-EEEeCChhHHHHHHhCCCCCCCCHHHHhhc--CCEEEEeCCCchHHHHH
Q 018506 44 QFESVGFIGLGNMGFR-MASNLMKA-GYKM-AVHDVNCNVMKMFSDMGVPTKETPFEVAEA--SDVVITMLPSSSHVLDV 118 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~-ia~~L~~~-G~~V-~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~--aDiVi~~v~~~~~~~~v 118 (355)
+++||||||+|.||.. .+..|.+. +.+| .++|+++++++. ...+....++.++++++ .|+|++|+|+....+.+
T Consensus 6 ~~~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~~-~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~ 84 (352)
T 3kux_A 6 DKIKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVHA-DWPAIPVVSDPQMLFNDPSIDLIVIPTPNDTHFPLA 84 (352)
T ss_dssp CCEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHT-TCSSCCEESCHHHHHHCSSCCEEEECSCTTTHHHHH
T ss_pred CCceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHHh-hCCCCceECCHHHHhcCCCCCEEEEeCChHHHHHHH
Confidence 3579999999999997 77777765 5675 488999988762 11356778899999875 89999999988766655
Q ss_pred hcCCCccccCCCCCCCeEEEEcC-CCCHHHHHHHHHHHhh
Q 018506 119 YNGPNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSN 157 (355)
Q Consensus 119 l~~~~~~l~~~~~~~~~ivi~~s-t~~~~~~~~l~~~~~~ 157 (355)
.. .++. +..++++.- +....+.+++.+...+
T Consensus 85 ~~----al~a----GkhV~~EKPla~~~~e~~~l~~~a~~ 116 (352)
T 3kux_A 85 QS----ALAA----GKHVVVDKPFTVTLSQANALKEHADD 116 (352)
T ss_dssp HH----HHHT----TCEEEECSSCCSCHHHHHHHHHHHHH
T ss_pred HH----HHHC----CCcEEEECCCcCCHHHHHHHHHHHHH
Confidence 43 2332 223666543 4567777777766543
|
| >3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=1.1e-05 Score=76.93 Aligned_cols=70 Identities=17% Similarity=0.214 Sum_probs=54.9
Q ss_pred CCceEEEEcccHHhHHHHHHHHHC-CCc-EEEEeCChhHHHHHHhC--C----------------------CCCCCCHHH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKA-GYK-MAVHDVNCNVMKMFSDM--G----------------------VPTKETPFE 97 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~-G~~-V~v~dr~~~~~~~l~~~--g----------------------~~~~~s~~e 97 (355)
+.+||||||+|.||..++..+.+. +.+ +.++|+++++++.+.+. | ...+++.++
T Consensus 22 k~IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D~ee 101 (446)
T 3upl_A 22 KPIRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDDNDL 101 (446)
T ss_dssp CCEEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESCHHH
T ss_pred CceEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceEECCHHH
Confidence 458999999999999999988764 445 56789999998776531 3 235678889
Q ss_pred Hhh--cCCEEEEeCCCch
Q 018506 98 VAE--ASDVVITMLPSSS 113 (355)
Q Consensus 98 ~~~--~aDiVi~~v~~~~ 113 (355)
+++ +.|+|++++|.+.
T Consensus 102 LL~d~dIDaVviaTp~p~ 119 (446)
T 3upl_A 102 ILSNPLIDVIIDATGIPE 119 (446)
T ss_dssp HHTCTTCCEEEECSCCHH
T ss_pred HhcCCCCCEEEEcCCChH
Confidence 886 4899999998763
|
| >3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.21 E-value=1.9e-06 Score=80.15 Aligned_cols=104 Identities=13% Similarity=0.124 Sum_probs=71.2
Q ss_pred CceEEEEcccHHhHHHHHH-H-HH-CCCcEE-EEeCChhHHHHHHh-CCCCCCCCHHHHhhc--CCEEEEeCCCchHHHH
Q 018506 45 FESVGFIGLGNMGFRMASN-L-MK-AGYKMA-VHDVNCNVMKMFSD-MGVPTKETPFEVAEA--SDVVITMLPSSSHVLD 117 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~-L-~~-~G~~V~-v~dr~~~~~~~l~~-~g~~~~~s~~e~~~~--aDiVi~~v~~~~~~~~ 117 (355)
++||||||+|.||..+... + .. .+++|. ++|+++++.+...+ .++...+|.++++++ .|+|++|+|+....+.
T Consensus 2 ~~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~ 81 (345)
T 3f4l_A 2 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFEY 81 (345)
T ss_dssp CEEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSGGGTTCEEESCTHHHHTCTTEEEEEECSCGGGHHHH
T ss_pred ceEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHHhcCCCceECCHHHHhcCCCCCEEEEcCChHHHHHH
Confidence 5799999999999964433 4 32 356765 88999887754444 356678899999876 8999999998866665
Q ss_pred HhcCCCccccCCCCCCCeEEEEcC--CCCHHHHHHHHHHHhh
Q 018506 118 VYNGPNGLLQGGNSVRPQLLIDSS--TIDPQTSRNISAAVSN 157 (355)
Q Consensus 118 vl~~~~~~l~~~~~~~~~ivi~~s--t~~~~~~~~l~~~~~~ 157 (355)
+.. .++ .|+.|+.-. +..+.+.+++.+...+
T Consensus 82 ~~~----al~-----aGk~Vl~EKP~a~~~~e~~~l~~~a~~ 114 (345)
T 3f4l_A 82 AKR----ALE-----AGKNVLVEKPFTPTLAQAKELFALAKS 114 (345)
T ss_dssp HHH----HHH-----TTCEEEECSSSCSSHHHHHHHHHHHHH
T ss_pred HHH----HHH-----cCCcEEEeCCCCCCHHHHHHHHHHHHH
Confidence 543 233 233444333 4567777777766543
|
| >1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.21 E-value=6.1e-06 Score=76.62 Aligned_cols=110 Identities=15% Similarity=0.176 Sum_probs=77.0
Q ss_pred CCCCCCCceEEEEccc-HHhHHHHHHHHHC--CCcE-EEEeCChhHHHHHHh-CCC-CCCCCHHHHhh--cCCEEEEeCC
Q 018506 39 QVPSCQFESVGFIGLG-NMGFRMASNLMKA--GYKM-AVHDVNCNVMKMFSD-MGV-PTKETPFEVAE--ASDVVITMLP 110 (355)
Q Consensus 39 ~~~~~~~mkIgiIG~G-~mG~~ia~~L~~~--G~~V-~v~dr~~~~~~~l~~-~g~-~~~~s~~e~~~--~aDiVi~~v~ 110 (355)
-|++.+++||||||+| .+|...+..|.+. +.++ .++|+++++++.+.+ .+. ...+|.+++++ +.|+|++|+|
T Consensus 12 ~~~~~~~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp 91 (340)
T 1zh8_A 12 HMKPLRKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLP 91 (340)
T ss_dssp ----CCCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCC
T ss_pred ccCCCCceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCC
Confidence 4666778999999999 8999999999876 4564 688999999988766 354 56789999986 5899999999
Q ss_pred CchHHHHHhcCCCccccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHh
Q 018506 111 SSSHVLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVS 156 (355)
Q Consensus 111 ~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~-st~~~~~~~~l~~~~~ 156 (355)
+....+.+.. .++. +..++++. -+....+.+++.+...
T Consensus 92 ~~~H~~~~~~----al~a----GkhVl~EKPla~~~~ea~~l~~~a~ 130 (340)
T 1zh8_A 92 VELNLPFIEK----ALRK----GVHVICEKPISTDVETGKKVVELSE 130 (340)
T ss_dssp GGGHHHHHHH----HHHT----TCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred chHHHHHHHH----HHHC----CCcEEEeCCCCCCHHHHHHHHHHHH
Confidence 8765554443 3332 11355553 2345666677766554
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.20 E-value=3.2e-06 Score=80.09 Aligned_cols=92 Identities=18% Similarity=0.170 Sum_probs=70.2
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHH-HHHhcCC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV-LDVYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~-~~vl~~~ 122 (355)
.-.+++|||.|.+|..+|+.+...|.+|+++++++.+.......|+.. .+++++++.+|+|+++..+...+ ++
T Consensus 246 ~GKTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~~~G~~v-v~LeElL~~ADIVv~atgt~~lI~~e----- 319 (464)
T 3n58_A 246 AGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAAMDGFEV-VTLDDAASTADIVVTTTGNKDVITID----- 319 (464)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEE-CCHHHHGGGCSEEEECCSSSSSBCHH-----
T ss_pred cCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHHhcCcee-ccHHHHHhhCCEEEECCCCccccCHH-----
Confidence 447899999999999999999999999999999988765555566654 47899999999999987543221 12
Q ss_pred CccccCCCCCCCeEEEEcCCCCH
Q 018506 123 NGLLQGGNSVRPQLLIDSSTIDP 145 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~~ 145 (355)
.+..+ .++.+++|++....
T Consensus 320 --~l~~M--K~GAILINvGRgdv 338 (464)
T 3n58_A 320 --HMRKM--KDMCIVGNIGHFDN 338 (464)
T ss_dssp --HHHHS--CTTEEEEECSSSTT
T ss_pred --HHhcC--CCCeEEEEcCCCCc
Confidence 22221 26689999988764
|
| >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=98.20 E-value=6.2e-06 Score=77.97 Aligned_cols=105 Identities=22% Similarity=0.280 Sum_probs=76.8
Q ss_pred CceEEEEccc-HHhHHHHHHHHHC-CCcE-EEEeCChhHHHHHHh-CCCCCCCCHHHHhhc--CCEEEEeCCCchHHHHH
Q 018506 45 FESVGFIGLG-NMGFRMASNLMKA-GYKM-AVHDVNCNVMKMFSD-MGVPTKETPFEVAEA--SDVVITMLPSSSHVLDV 118 (355)
Q Consensus 45 ~mkIgiIG~G-~mG~~ia~~L~~~-G~~V-~v~dr~~~~~~~l~~-~g~~~~~s~~e~~~~--aDiVi~~v~~~~~~~~v 118 (355)
++||||||+| .||..++..|.+. +.++ .++|+++++++.+.+ .|+...+|.++++++ .|+|++++|+....+.+
T Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~ell~~~~vD~V~i~tp~~~H~~~~ 81 (387)
T 3moi_A 2 KIRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEYGIPVFATLAEMMQHVQMDAVYIASPHQFHCEHV 81 (387)
T ss_dssp CEEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHHTCCEESSHHHHHHHSCCSEEEECSCGGGHHHHH
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHcCCCeECCHHHHHcCCCCCEEEEcCCcHHHHHHH
Confidence 5799999999 9999999999876 4564 588999999887765 478888999999874 99999999987665554
Q ss_pred hcCCCccccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhh
Q 018506 119 YNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSN 157 (355)
Q Consensus 119 l~~~~~~l~~~~~~~~~ivi~~-st~~~~~~~~l~~~~~~ 157 (355)
.. .++. ...++++. .+....+.+++.+...+
T Consensus 82 ~~----al~a----Gk~Vl~EKP~a~~~~e~~~l~~~a~~ 113 (387)
T 3moi_A 82 VQ----ASEQ----GLHIIVEKPLTLSRDEADRMIEAVER 113 (387)
T ss_dssp HH----HHHT----TCEEEECSCCCSCHHHHHHHHHHHHH
T ss_pred HH----HHHC----CCceeeeCCccCCHHHHHHHHHHHHH
Confidence 43 2322 11355443 24456777777666543
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=3.6e-06 Score=79.54 Aligned_cols=93 Identities=17% Similarity=0.115 Sum_probs=69.8
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHH-HHhcCC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVL-DVYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~-~vl~~~ 122 (355)
.-.+|+|+|+|.+|..+|+.|...|.+|+++|+++.+.......|.. ..+++++++.+|+|++|..+...+. +
T Consensus 219 ~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G~~-v~~Leeal~~ADIVi~atgt~~lI~~e----- 292 (435)
T 3gvp_A 219 GGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGFR-LVKLNEVIRQVDIVITCTGNKNVVTRE----- 292 (435)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCE-ECCHHHHTTTCSEEEECSSCSCSBCHH-----
T ss_pred cCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHHHcCCE-eccHHHHHhcCCEEEECCCCcccCCHH-----
Confidence 44789999999999999999999999999999999876655556654 3579999999999999743222221 2
Q ss_pred CccccCCCCCCCeEEEEcCCCCHH
Q 018506 123 NGLLQGGNSVRPQLLIDSSTIDPQ 146 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~~~ 146 (355)
.+... .++.+++|++...++
T Consensus 293 --~l~~M--K~gailINvgrg~~E 312 (435)
T 3gvp_A 293 --HLDRM--KNSCIVCNMGHSNTE 312 (435)
T ss_dssp --HHHHS--CTTEEEEECSSTTTT
T ss_pred --HHHhc--CCCcEEEEecCCCcc
Confidence 22221 256799999887654
|
| >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.19 E-value=1.3e-06 Score=83.79 Aligned_cols=68 Identities=19% Similarity=0.234 Sum_probs=55.4
Q ss_pred CCCceEEEEcccHH--hHHHHHHHHH----CCCcEEEEeCChhHHHHHHhC---------CCCCCCCHHHHhhcCCEEEE
Q 018506 43 CQFESVGFIGLGNM--GFRMASNLMK----AGYKMAVHDVNCNVMKMFSDM---------GVPTKETPFEVAEASDVVIT 107 (355)
Q Consensus 43 ~~~mkIgiIG~G~m--G~~ia~~L~~----~G~~V~v~dr~~~~~~~l~~~---------g~~~~~s~~e~~~~aDiVi~ 107 (355)
|+.|||+|||+|.| |..++..|+. .| +|++||+++++++..... .+..+++.++++++||+||+
T Consensus 3 m~~~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~~~~~l~~~~~~I~~TtD~~eAl~dADfVI~ 81 (450)
T 3fef_A 3 LDQIKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKALSAADIVII 81 (450)
T ss_dssp CCCEEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHHHHTTSTTSCEEEEEESSHHHHHTTCSEEEE
T ss_pred CCCCEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHHHHHHHhccCCeEEEECCHHHHhcCCCEEEe
Confidence 45689999999996 6899999986 56 999999999887654431 24456789999999999999
Q ss_pred eCCC
Q 018506 108 MLPS 111 (355)
Q Consensus 108 ~v~~ 111 (355)
+++-
T Consensus 82 airv 85 (450)
T 3fef_A 82 SILP 85 (450)
T ss_dssp CCCS
T ss_pred cccc
Confidence 9974
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.14 E-value=2.8e-06 Score=79.74 Aligned_cols=70 Identities=24% Similarity=0.360 Sum_probs=54.2
Q ss_pred CCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCC----CCC--CCCHHHHhhcCCEEEEeCCCc
Q 018506 42 SCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG----VPT--KETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 42 ~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g----~~~--~~s~~e~~~~aDiVi~~v~~~ 112 (355)
..+.|||.|||+|.+|+.++..|++ .++|.++|++.++++.+.+.. +.+ ..++.++++++|+||.|+|..
T Consensus 13 ~g~~mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~~ 88 (365)
T 3abi_A 13 EGRHMKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMKEFELVIGALPGF 88 (365)
T ss_dssp ---CCEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHTTCSEEEECCCGG
T ss_pred cCCccEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHHHHhCCCEEEEecCCc
Confidence 3456899999999999999999976 489999999999988876532 222 223456778999999999865
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.13 E-value=5.5e-06 Score=77.11 Aligned_cols=106 Identities=16% Similarity=0.208 Sum_probs=72.7
Q ss_pred CCCceEEEEcccHHhHH-HHHHHHHC-CCcE-EEEeCChhHHHHHHh-CCCC-CCCCHHHHhh--cCCEEEEeCCCchHH
Q 018506 43 CQFESVGFIGLGNMGFR-MASNLMKA-GYKM-AVHDVNCNVMKMFSD-MGVP-TKETPFEVAE--ASDVVITMLPSSSHV 115 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~-ia~~L~~~-G~~V-~v~dr~~~~~~~l~~-~g~~-~~~s~~e~~~--~aDiVi~~v~~~~~~ 115 (355)
++|+||||||+|.||.. ++..+.+. +.+| .++|+++++++++.+ .|+. ..+|.+++++ +.|+|++|+|+....
T Consensus 21 ~~mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~I~tP~~~H~ 100 (350)
T 4had_A 21 QSMLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSVPHAFGSYEEMLASDVIDAVYIPLPTSQHI 100 (350)
T ss_dssp -CCEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCSSCSEEEECSCGGGHH
T ss_pred cCccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCeeeCCHHHHhcCCCCCEEEEeCCCchhH
Confidence 46789999999999975 56777765 4565 478999999998876 4653 6789999985 479999999988766
Q ss_pred HHHhcCCCccccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHh
Q 018506 116 LDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVS 156 (355)
Q Consensus 116 ~~vl~~~~~~l~~~~~~~~~ivi~~-st~~~~~~~~l~~~~~ 156 (355)
+-++.. ++. +..+++.- -+....+.+++.+...
T Consensus 101 ~~~~~a----l~a----GkhVl~EKPla~~~~ea~~l~~~a~ 134 (350)
T 4had_A 101 EWSIKA----ADA----GKHVVCEKPLALKAGDIDAVIAARD 134 (350)
T ss_dssp HHHHHH----HHT----TCEEEECSCCCSSGGGGHHHHHHHH
T ss_pred HHHHHH----Hhc----CCEEEEeCCcccchhhHHHHHHHHH
Confidence 555432 221 11244432 1234556666666554
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=98.11 E-value=1.6e-06 Score=69.94 Aligned_cols=71 Identities=18% Similarity=0.334 Sum_probs=57.9
Q ss_pred ceEEEEcc----cHHhHHHHHHHHHCCCcEEEEeCChhHH-HHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhc
Q 018506 46 ESVGFIGL----GNMGFRMASNLMKAGYKMAVHDVNCNVM-KMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYN 120 (355)
Q Consensus 46 mkIgiIG~----G~mG~~ia~~L~~~G~~V~v~dr~~~~~-~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~ 120 (355)
.+|+|||+ |.+|..++++|.+.||+ +|++||.+. +++ .|.....|+.|+.+..|++++++|. ..+.++++
T Consensus 14 ~~vaVvGas~~~g~~G~~~~~~l~~~G~~--v~~vnp~~~~~~i--~G~~~~~sl~el~~~vDlavi~vp~-~~~~~v~~ 88 (140)
T 1iuk_A 14 KTIAVLGAHKDPSRPAHYVPRYLREQGYR--VLPVNPRFQGEEL--FGEEAVASLLDLKEPVDILDVFRPP-SALMDHLP 88 (140)
T ss_dssp CEEEEETCCSSTTSHHHHHHHHHHHTTCE--EEEECGGGTTSEE--TTEECBSSGGGCCSCCSEEEECSCH-HHHTTTHH
T ss_pred CEEEEECCCCCCCChHHHHHHHHHHCCCE--EEEeCCCcccCcC--CCEEecCCHHHCCCCCCEEEEEeCH-HHHHHHHH
Confidence 57999999 89999999999999997 777777752 222 4677888999988889999999997 57667665
Q ss_pred C
Q 018506 121 G 121 (355)
Q Consensus 121 ~ 121 (355)
+
T Consensus 89 ~ 89 (140)
T 1iuk_A 89 E 89 (140)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=98.11 E-value=3.2e-06 Score=77.43 Aligned_cols=67 Identities=19% Similarity=0.284 Sum_probs=52.3
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCC--cEEEEeCChhHHH----HHHh------CCCCCC-CCHHHHhhcCCEEEEeCCCc
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMK----MFSD------MGVPTK-ETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~--~V~v~dr~~~~~~----~l~~------~g~~~~-~s~~e~~~~aDiVi~~v~~~ 112 (355)
|||+|||+|.||.+++..|+..|+ +|.++|+++++++ .+.+ ...... ++..+++++||+||++...+
T Consensus 1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~~~a~~~aDvVii~ag~~ 80 (314)
T 3nep_X 1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGPTEDSDVCIITAGLP 80 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESSSGGGTTCSEEEECCCC-
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCCHHHhCCCCEEEECCCCC
Confidence 799999999999999999999887 8999999998764 2222 122232 35678889999999997554
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=9.2e-06 Score=74.89 Aligned_cols=70 Identities=17% Similarity=0.206 Sum_probs=54.0
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCC--cEEEEeCChhHHHHH----HhC-----CCCCCCCHHHHhhcCCEEEEeCCC
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMKMF----SDM-----GVPTKETPFEVAEASDVVITMLPS 111 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~--~V~v~dr~~~~~~~l----~~~-----g~~~~~s~~e~~~~aDiVi~~v~~ 111 (355)
.+.|||+|||+|.+|.+++..|+..++ ++.++|+++++++.. .+. ...+..+..+++++||+||++.+.
T Consensus 7 ~~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~ag~ 86 (326)
T 2zqz_A 7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKDADLVVITAGA 86 (326)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGGGCSEEEECCCC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEEcCCC
Confidence 345899999999999999999998876 899999998877542 221 122333557788999999999865
Q ss_pred c
Q 018506 112 S 112 (355)
Q Consensus 112 ~ 112 (355)
+
T Consensus 87 ~ 87 (326)
T 2zqz_A 87 P 87 (326)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.08 E-value=8.6e-06 Score=75.45 Aligned_cols=70 Identities=11% Similarity=0.072 Sum_probs=55.3
Q ss_pred CCCCceEEEEcc-cHHhHHHHHHHHHCC--CcEEEEeCChhHHHH----HHhC-----CCCCCCCHHHHhhcCCEEEEeC
Q 018506 42 SCQFESVGFIGL-GNMGFRMASNLMKAG--YKMAVHDVNCNVMKM----FSDM-----GVPTKETPFEVAEASDVVITML 109 (355)
Q Consensus 42 ~~~~mkIgiIG~-G~mG~~ia~~L~~~G--~~V~v~dr~~~~~~~----l~~~-----g~~~~~s~~e~~~~aDiVi~~v 109 (355)
.+.++||+|||+ |.+|.++|..++..| ++|.++|+++++++. +.+. .+..+++..+++++||+||++.
T Consensus 5 ~~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~dADvVvita 84 (343)
T 3fi9_A 5 YLTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTDAKYIVSSG 84 (343)
T ss_dssp CSCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTTEEEEEECC
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCCCCEEEEcc
Confidence 356789999998 999999999999988 589999999887654 4331 2233467888899999999997
Q ss_pred CC
Q 018506 110 PS 111 (355)
Q Consensus 110 ~~ 111 (355)
..
T Consensus 85 G~ 86 (343)
T 3fi9_A 85 GA 86 (343)
T ss_dssp C-
T ss_pred CC
Confidence 43
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=98.08 E-value=7e-06 Score=76.61 Aligned_cols=67 Identities=22% Similarity=0.261 Sum_probs=54.4
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC-CCCCCCCHHHHhh-cCCEEEEeCC
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPTKETPFEVAE-ASDVVITMLP 110 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~-g~~~~~s~~e~~~-~aDiVi~~v~ 110 (355)
..-++|+|+|+|+||..+|+.|.+.|++|+++|+++++++++.+. ++... +..++.. +||+++.|..
T Consensus 171 L~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ga~~v-~~~~ll~~~~DIvip~a~ 239 (364)
T 1leh_A 171 LEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAV-APNAIYGVTCDIFAPCAL 239 (364)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEEC-CGGGTTTCCCSEEEECSC
T ss_pred CCcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEE-ChHHHhccCCcEeeccch
Confidence 355789999999999999999999999999999999998877663 55444 4445444 8999998864
|
| >3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A | Back alignment and structure |
|---|
Probab=98.07 E-value=1.4e-05 Score=74.74 Aligned_cols=105 Identities=17% Similarity=0.198 Sum_probs=72.8
Q ss_pred CCCceEEEEcccHHhHH-HHHHHHHC-CCcE-EEEeCChhHHHHHHhCCCCCCCCHHHHhh--cCCEEEEeCCCchHHHH
Q 018506 43 CQFESVGFIGLGNMGFR-MASNLMKA-GYKM-AVHDVNCNVMKMFSDMGVPTKETPFEVAE--ASDVVITMLPSSSHVLD 117 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~-ia~~L~~~-G~~V-~v~dr~~~~~~~l~~~g~~~~~s~~e~~~--~aDiVi~~v~~~~~~~~ 117 (355)
|+++||||||+|.||.. .+..|.+. +++| .++|++++++.... .+....++.+++++ +.|+|++|+|+....+.
T Consensus 3 m~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~~-~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~ 81 (358)
T 3gdo_A 3 LDTIKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEVKRDF-PDAEVVHELEEITNDPAIELVIVTTPSGLHYEH 81 (358)
T ss_dssp TTCEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHHHHHHC-TTSEEESSTHHHHTCTTCCEEEECSCTTTHHHH
T ss_pred CCcceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHhhC-CCCceECCHHHHhcCCCCCEEEEcCCcHHHHHH
Confidence 35689999999999997 67777665 5675 58899987743211 25667789999987 68999999999876665
Q ss_pred HhcCCCccccCCCCCCCeEEEEcC-CCCHHHHHHHHHHHh
Q 018506 118 VYNGPNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVS 156 (355)
Q Consensus 118 vl~~~~~~l~~~~~~~~~ivi~~s-t~~~~~~~~l~~~~~ 156 (355)
+.. .++. +..++++.- +....+.+++.+...
T Consensus 82 ~~~----al~a----GkhVl~EKPla~~~~e~~~l~~~a~ 113 (358)
T 3gdo_A 82 TMA----CIQA----GKHVVMEKPMTATAEEGETLKRAAD 113 (358)
T ss_dssp HHH----HHHT----TCEEEEESSCCSSHHHHHHHHHHHH
T ss_pred HHH----HHHc----CCeEEEecCCcCCHHHHHHHHHHHH
Confidence 543 3332 123555532 455677777766654
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=9.1e-06 Score=77.12 Aligned_cols=65 Identities=22% Similarity=0.201 Sum_probs=54.9
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCC---------------------------CHHH
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKE---------------------------TPFE 97 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~---------------------------s~~e 97 (355)
-.+|+|||+|.+|...++.+...|.+|+++|+++++.+.+.+.|..... ++.+
T Consensus 172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~e 251 (401)
T 1x13_A 172 PAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMELFAA 251 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCEEEEecccccccccccchhhccHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999998887777754332 2557
Q ss_pred HhhcCCEEEEeC
Q 018506 98 VAEASDVVITML 109 (355)
Q Consensus 98 ~~~~aDiVi~~v 109 (355)
.+..+|+||.++
T Consensus 252 ~~~~aDvVI~~~ 263 (401)
T 1x13_A 252 QAKEVDIIVTTA 263 (401)
T ss_dssp HHHHCSEEEECC
T ss_pred HhCCCCEEEECC
Confidence 778899999993
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.07 E-value=4.5e-06 Score=80.19 Aligned_cols=68 Identities=15% Similarity=0.161 Sum_probs=53.4
Q ss_pred CceEEEEcccHH-hHHHHHHHHHC-----CCcEEEEeCCh--hHHHHHH--------hCC----CCCCCCHHHHhhcCCE
Q 018506 45 FESVGFIGLGNM-GFRMASNLMKA-----GYKMAVHDVNC--NVMKMFS--------DMG----VPTKETPFEVAEASDV 104 (355)
Q Consensus 45 ~mkIgiIG~G~m-G~~ia~~L~~~-----G~~V~v~dr~~--~~~~~l~--------~~g----~~~~~s~~e~~~~aDi 104 (355)
.|||+|||+|.+ |.+++..|+++ +++|.+||+++ ++++... ..+ +..+++..+++++||+
T Consensus 7 ~~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~t~D~~eal~gAD~ 86 (450)
T 1s6y_A 7 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADF 86 (450)
T ss_dssp CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSE
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEEeCCHHHHhCCCCE
Confidence 479999999999 88888888884 67899999999 7765422 111 2234677889999999
Q ss_pred EEEeCCCc
Q 018506 105 VITMLPSS 112 (355)
Q Consensus 105 Vi~~v~~~ 112 (355)
||++++.+
T Consensus 87 VVitagv~ 94 (450)
T 1s6y_A 87 VTTQFRVG 94 (450)
T ss_dssp EEECCCTT
T ss_pred EEEcCCCC
Confidence 99999864
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=98.06 E-value=1.8e-06 Score=77.87 Aligned_cols=95 Identities=11% Similarity=0.052 Sum_probs=66.1
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHhC-C---CCCCCCHHHHhhcCCEEEEeCCCchHHHHH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-G---VPTKETPFEVAEASDVVITMLPSSSHVLDV 118 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~~-g---~~~~~s~~e~~~~aDiVi~~v~~~~~~~~v 118 (355)
..+++.|+|+|.+|.+++..|.+.|. +|++++|++++++++.+. + .....+.+++..++|+||.++|.....+..
T Consensus 125 ~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~l~~~aDiIInaTp~gm~~~~~ 204 (281)
T 3o8q_A 125 KGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFEQLKQSYDVIINSTSASLDGELP 204 (281)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCSCEEEEEECSCCCC----C
T ss_pred cCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeEeeHHHhcCCCCEEEEcCcCCCCCCCC
Confidence 45789999999999999999999996 899999999998887652 1 011224445547899999999876432211
Q ss_pred hcCCCccccCCCCCCCeEEEEcCCCC
Q 018506 119 YNGPNGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 119 l~~~~~~l~~~~~~~~~ivi~~st~~ 144 (355)
... ...+. ++.+++|+...+
T Consensus 205 ~l~-~~~l~-----~~~~V~DlvY~P 224 (281)
T 3o8q_A 205 AID-PVIFS-----SRSVCYDMMYGK 224 (281)
T ss_dssp SCC-GGGEE-----EEEEEEESCCCS
T ss_pred CCC-HHHhC-----cCCEEEEecCCC
Confidence 101 11222 457899998874
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.06 E-value=1.2e-05 Score=75.46 Aligned_cols=70 Identities=20% Similarity=0.278 Sum_probs=56.2
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh-CCCCC------CCCHHHHhhcCCEEEEeCCCc
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-MGVPT------KETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~-~g~~~------~~s~~e~~~~aDiVi~~v~~~ 112 (355)
...++|+|+|+|.+|..+++.+...|++|+++||++++.+.+.+ .+... ..+..++++.+|+||.+++.+
T Consensus 164 l~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~DvVi~~~g~~ 240 (369)
T 2eez_A 164 VAPASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSVQHADLLIGAVLVP 240 (369)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHHHHHHCSEEEECCC--
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCceEEEecCCHHHHHHHHhCCCEEEECCCCC
Confidence 34488999999999999999999999999999999998877765 44431 234556778999999999754
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=98.06 E-value=8.4e-06 Score=74.72 Aligned_cols=69 Identities=20% Similarity=0.206 Sum_probs=50.9
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCC--hhHHHH----HHh------CCCCCC-CCHHHHhhcCCEEEEeC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVN--CNVMKM----FSD------MGVPTK-ETPFEVAEASDVVITML 109 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~--~~~~~~----l~~------~g~~~~-~s~~e~~~~aDiVi~~v 109 (355)
+.+||+|||+|.||.+++..|+..|+ +|++||++ +++++. +.+ ...... ++..+++++||+||++.
T Consensus 7 ~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d~~a~~~aDvVIiaa 86 (315)
T 3tl2_A 7 KRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSDYADTADSDVVVITA 86 (315)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSEEEECC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCCHHHhCCCCEEEEeC
Confidence 45799999999999999999999999 99999998 444332 111 122222 23357788999999997
Q ss_pred CCc
Q 018506 110 PSS 112 (355)
Q Consensus 110 ~~~ 112 (355)
..+
T Consensus 87 g~p 89 (315)
T 3tl2_A 87 GIA 89 (315)
T ss_dssp SCC
T ss_pred CCC
Confidence 443
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.05 E-value=1.3e-05 Score=65.39 Aligned_cols=70 Identities=7% Similarity=0.070 Sum_probs=51.3
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCC-hhHHHHHHh---CCCCC----CCC---HHHH-hhcCCEEEEeCCC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVN-CNVMKMFSD---MGVPT----KET---PFEV-AEASDVVITMLPS 111 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~-~~~~~~l~~---~g~~~----~~s---~~e~-~~~aDiVi~~v~~ 111 (355)
..++|.|+|+|.+|..+++.|.+.|++|++++++ +++.+.+.+ .+... .++ +.++ ++.+|.||+++++
T Consensus 2 ~~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~ 81 (153)
T 1id1_A 2 RKDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDN 81 (153)
T ss_dssp CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSC
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecCC
Confidence 3468999999999999999999999999999998 465544432 23221 112 2333 5789999999987
Q ss_pred ch
Q 018506 112 SS 113 (355)
Q Consensus 112 ~~ 113 (355)
+.
T Consensus 82 d~ 83 (153)
T 1id1_A 82 DA 83 (153)
T ss_dssp HH
T ss_pred hH
Confidence 63
|
| >3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=98.04 E-value=1.3e-05 Score=75.12 Aligned_cols=104 Identities=13% Similarity=0.187 Sum_probs=72.9
Q ss_pred CCCceEEEEcccHHhHH-HHHHHHHC-CCcE-EEEeCChhHHHHHHhC-CCCCCCCHHHHhhc--CCEEEEeCCCchHHH
Q 018506 43 CQFESVGFIGLGNMGFR-MASNLMKA-GYKM-AVHDVNCNVMKMFSDM-GVPTKETPFEVAEA--SDVVITMLPSSSHVL 116 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~-ia~~L~~~-G~~V-~v~dr~~~~~~~l~~~-g~~~~~s~~e~~~~--aDiVi~~v~~~~~~~ 116 (355)
++++||||||+|.||.. .+..|.+. +.+| .++|++++++. .+. +....++.++++++ .|+|++|+|+....+
T Consensus 3 ~~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~--~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~ 80 (362)
T 3fhl_A 3 LEIIKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKELSK--ERYPQASIVRSFKELTEDPEIDLIVVNTPDNTHYE 80 (362)
T ss_dssp CCCEEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCGGG--TTCTTSEEESCSHHHHTCTTCCEEEECSCGGGHHH
T ss_pred CCceEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHH--HhCCCCceECCHHHHhcCCCCCEEEEeCChHHHHH
Confidence 45689999999999997 67777765 5675 58899988732 222 55677899999876 899999999886665
Q ss_pred HHhcCCCccccCCCCCCCeEEEEcC-CCCHHHHHHHHHHHh
Q 018506 117 DVYNGPNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVS 156 (355)
Q Consensus 117 ~vl~~~~~~l~~~~~~~~~ivi~~s-t~~~~~~~~l~~~~~ 156 (355)
.+.. .++. +..++++.- +....+.+++.+...
T Consensus 81 ~~~~----al~a----GkhVl~EKP~a~~~~ea~~l~~~a~ 113 (362)
T 3fhl_A 81 YAGM----ALEA----GKNVVVEKPFTSTTKQGEELIALAK 113 (362)
T ss_dssp HHHH----HHHT----TCEEEEESSCCSSHHHHHHHHHHHH
T ss_pred HHHH----HHHC----CCeEEEecCCCCCHHHHHHHHHHHH
Confidence 5543 2332 224565543 456777777766654
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=3.8e-06 Score=75.09 Aligned_cols=92 Identities=18% Similarity=0.201 Sum_probs=64.5
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCCc
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNG 124 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~~ 124 (355)
..++.|||+|.+|.+++..|.+.|.+|+++||++++++.+.+.++... +.+++ .++|+||.++|....-+..+. ...
T Consensus 118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la~~~~~~~-~~~~l-~~~DiVInaTp~Gm~~~~~l~-~~~ 194 (269)
T 3phh_A 118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQRLGCDCF-MEPPK-SAFDLIINATSASLHNELPLN-KEV 194 (269)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHHHHTCEEE-SSCCS-SCCSEEEECCTTCCCCSCSSC-HHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeEe-cHHHh-ccCCEEEEcccCCCCCCCCCC-hHH
Confidence 478999999999999999999999999999999999988875443322 22333 389999999986421110000 000
Q ss_pred ---cccCCCCCCCeEEEEcCCCC
Q 018506 125 ---LLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 125 ---~l~~~~~~~~~ivi~~st~~ 144 (355)
.+. ++.+++|+...+
T Consensus 195 l~~~l~-----~~~~v~D~vY~P 212 (269)
T 3phh_A 195 LKGYFK-----EGKLAYDLAYGF 212 (269)
T ss_dssp HHHHHH-----HCSEEEESCCSS
T ss_pred HHhhCC-----CCCEEEEeCCCC
Confidence 121 346899998875
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=98.01 E-value=7.5e-06 Score=77.86 Aligned_cols=70 Identities=20% Similarity=0.278 Sum_probs=57.2
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHh-CCCCC--CCCHHHHhhcCCEEEEeCCCch
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSD-MGVPT--KETPFEVAEASDVVITMLPSSS 113 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~-~g~~~--~~s~~e~~~~aDiVi~~v~~~~ 113 (355)
...+|+|||+|.||..++..|...|. +|+++||++++++.+.+ .|+.. ..++.+.+..+|+||.|++.+.
T Consensus 166 ~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~l~~~l~~aDvVi~at~~~~ 239 (404)
T 1gpj_A 166 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAAPH 239 (404)
T ss_dssp TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSSSS
T ss_pred cCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCceecHHhHHHHhcCCCEEEEccCCCC
Confidence 44789999999999999999999998 89999999998865543 35432 2467778889999999998653
|
| >4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=7.5e-06 Score=76.85 Aligned_cols=104 Identities=13% Similarity=0.263 Sum_probs=71.4
Q ss_pred CCceEEEEcccHHhHHHHHHHHHC--CCcE-EEEeCChhHHHHHHh-CCCCCCCCHHHHhhcCCEEEEeCCCchH----H
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKA--GYKM-AVHDVNCNVMKMFSD-MGVPTKETPFEVAEASDVVITMLPSSSH----V 115 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~--G~~V-~v~dr~~~~~~~l~~-~g~~~~~s~~e~~~~aDiVi~~v~~~~~----~ 115 (355)
...||+|||+| +|...+..+.+. ++++ .++||++++.+++.+ .|+...+|.++++++.|++++++|+... .
T Consensus 6 ~~~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~gv~~~~~~~~l~~~~D~v~i~~p~~~h~~~~~ 84 (372)
T 4gmf_A 6 PKQRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAFGIPLYTSPEQITGMPDIACIVVRSTVAGGAGT 84 (372)
T ss_dssp -CEEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHTTCCEESSGGGCCSCCSEEEECCC--CTTSHHH
T ss_pred CCCEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHhCCCEECCHHHHhcCCCEEEEECCCcccchhHH
Confidence 45799999999 899888888765 4665 478999999988876 6888889999999999999999997633 1
Q ss_pred HHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 116 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 116 ~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
+-+.. .++ .|+-|+.---..+++.+++.+...+
T Consensus 85 ~~a~~----al~-----aGkhVl~EKPl~~~ea~~l~~~A~~ 117 (372)
T 4gmf_A 85 QLARH----FLA-----RGVHVIQEHPLHPDDISSLQTLAQE 117 (372)
T ss_dssp HHHHH----HHH-----TTCEEEEESCCCHHHHHHHHHHHHH
T ss_pred HHHHH----HHH-----cCCcEEEecCCCHHHHHHHHHHHHH
Confidence 11111 222 2223333334556777777665543
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=8.6e-06 Score=74.90 Aligned_cols=70 Identities=17% Similarity=0.239 Sum_probs=54.7
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCC--cEEEEeCChhHHHH----HHhC-----CCCCCCCHHHHhhcCCEEEEeCCC
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMKM----FSDM-----GVPTKETPFEVAEASDVVITMLPS 111 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~--~V~v~dr~~~~~~~----l~~~-----g~~~~~s~~e~~~~aDiVi~~v~~ 111 (355)
...+||+|||+|.||.+++..|+..|+ ++.++|+++++++- +.+. .....++..+++++||+||++...
T Consensus 7 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~~aDiVvi~ag~ 86 (326)
T 3vku_A 7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKDADLVVITAGA 86 (326)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhcCCCEEEECCCC
Confidence 345899999999999999999999887 89999999887763 3321 223344556788999999999754
Q ss_pred c
Q 018506 112 S 112 (355)
Q Consensus 112 ~ 112 (355)
+
T Consensus 87 ~ 87 (326)
T 3vku_A 87 P 87 (326)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.00 E-value=1.3e-05 Score=73.72 Aligned_cols=68 Identities=18% Similarity=0.212 Sum_probs=52.6
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCC--cEEEEeCChhHHHHH----HhC-----CCCCCCCHHHHhhcCCEEEEeCCCc
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMKMF----SDM-----GVPTKETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~--~V~v~dr~~~~~~~l----~~~-----g~~~~~s~~e~~~~aDiVi~~v~~~ 112 (355)
.|||+|||+|.+|.+++..|+..++ ++.++|+++++++.. .+. ...+..+..+++++||+||++.+.+
T Consensus 5 ~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVii~ag~~ 83 (318)
T 1ez4_A 5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDCKDADLVVITAGAP 83 (318)
T ss_dssp BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGGTTCSEEEECCCC-
T ss_pred CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEECCCCC
Confidence 3899999999999999999998876 899999998877642 221 2223335577889999999998654
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.98 E-value=1.8e-05 Score=71.03 Aligned_cols=94 Identities=12% Similarity=0.063 Sum_probs=65.5
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC-CC--CC-CCCHHHHh-hcCCEEEEeCCCchHHHHH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GV--PT-KETPFEVA-EASDVVITMLPSSSHVLDV 118 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~-g~--~~-~~s~~e~~-~~aDiVi~~v~~~~~~~~v 118 (355)
..+++.|+|+|.||.+++..|++.|++|+++||++++++.+.+. +. .. ..+.+++. ..+|+||.+++.... ..+
T Consensus 118 ~~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivVn~t~~~~~-~~~ 196 (271)
T 1nyt_A 118 PGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGIS-GDI 196 (271)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGG-TCC
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhccCCeeEecHHHhccCCCCEEEECCCCCCC-CCC
Confidence 44789999999999999999999999999999999998777642 21 11 12233333 489999999987532 111
Q ss_pred hcCCC-ccccCCCCCCCeEEEEcCCCC
Q 018506 119 YNGPN-GLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 119 l~~~~-~~l~~~~~~~~~ivi~~st~~ 144 (355)
..+. .++ .++.+++|+....
T Consensus 197 -~~i~~~~l-----~~~~~v~D~~y~p 217 (271)
T 1nyt_A 197 -PAIPSSLI-----HPGIYCYDMFYQK 217 (271)
T ss_dssp -CCCCGGGC-----CTTCEEEESCCCS
T ss_pred -CCCCHHHc-----CCCCEEEEeccCC
Confidence 1111 122 2457999998874
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=4.6e-06 Score=67.50 Aligned_cols=71 Identities=14% Similarity=0.275 Sum_probs=56.9
Q ss_pred CceEEEEcc----cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhc
Q 018506 45 FESVGFIGL----GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYN 120 (355)
Q Consensus 45 ~mkIgiIG~----G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~ 120 (355)
..+|+|||+ |.+|..++++|.+.||+ +|+++|.. +.+ .|.....++.|+....|++++++|. ..+.+++.
T Consensus 22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~~--v~~Vnp~~-~~i--~G~~~y~sl~~l~~~vDlvvi~vp~-~~~~~vv~ 95 (144)
T 2d59_A 22 YKKIALVGASPKPERDANIVMKYLLEHGYD--VYPVNPKY-EEV--LGRKCYPSVLDIPDKIEVVDLFVKP-KLTMEYVE 95 (144)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTCE--EEEECTTC-SEE--TTEECBSSGGGCSSCCSEEEECSCH-HHHHHHHH
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHHCCCE--EEEECCCC-CeE--CCeeccCCHHHcCCCCCEEEEEeCH-HHHHHHHH
Confidence 367999999 79999999999999997 56666654 222 4777888999988889999999997 46677665
Q ss_pred C
Q 018506 121 G 121 (355)
Q Consensus 121 ~ 121 (355)
+
T Consensus 96 ~ 96 (144)
T 2d59_A 96 Q 96 (144)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=1.9e-05 Score=72.35 Aligned_cols=67 Identities=18% Similarity=0.239 Sum_probs=50.1
Q ss_pred ceEEEEcc-cHHhHHHHHHHHHCC--CcEEEEeCChhH--HHHHHhCC----CCC---CCCHHHHhhcCCEEEEeCCCc
Q 018506 46 ESVGFIGL-GNMGFRMASNLMKAG--YKMAVHDVNCNV--MKMFSDMG----VPT---KETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 46 mkIgiIG~-G~mG~~ia~~L~~~G--~~V~v~dr~~~~--~~~l~~~g----~~~---~~s~~e~~~~aDiVi~~v~~~ 112 (355)
|||+|||+ |.+|.+++..|+..| ++|.++|+++.. +..+.+.. +.. +++.+++++++|+||++...+
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag~~ 79 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVP 79 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCCcC
Confidence 79999998 999999999999988 789999998722 22333321 111 246777899999999997433
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=4e-05 Score=72.92 Aligned_cols=76 Identities=20% Similarity=0.254 Sum_probs=60.3
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCC----CCHH---HH-hhcCCEEEEeCCCchHH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK----ETPF---EV-AEASDVVITMLPSSSHV 115 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~----~s~~---e~-~~~aDiVi~~v~~~~~~ 115 (355)
..++|.|+|+|.+|..+++.|.+.|++|+++|+++++++.+.+.|..+. ++.+ ++ ++.+|+||++++++...
T Consensus 3 ~~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~~~~~n 82 (413)
T 3l9w_A 3 HGMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTN 82 (413)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCSSHHHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCCChHHH
Confidence 3478999999999999999999999999999999999999988776542 2222 22 46899999999987544
Q ss_pred HHHh
Q 018506 116 LDVY 119 (355)
Q Consensus 116 ~~vl 119 (355)
..++
T Consensus 83 ~~i~ 86 (413)
T 3l9w_A 83 LQLT 86 (413)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
|
| >3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=3.1e-05 Score=72.80 Aligned_cols=83 Identities=20% Similarity=0.253 Sum_probs=65.0
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCCh------hHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHH
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC------NVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVL 116 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~------~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~ 116 (355)
-+-.||+|||.|.-|.+-|.+|.++|.+|.+--|.. ...+...+.|..+. +.+|+++.+|+|++.+||. .-.
T Consensus 35 lkgK~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~~S~~~A~~~Gf~v~-~~~eA~~~ADvV~~L~PD~-~q~ 112 (491)
T 3ulk_A 35 LQGKKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVG-TYEELIPQADLVINLTPDK-QHS 112 (491)
T ss_dssp GTTSEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTTCHHHHHHHHTTCEEE-EHHHHGGGCSEEEECSCGG-GHH
T ss_pred HcCCEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCcccccchHHHHHHCCCEec-CHHHHHHhCCEEEEeCChh-hHH
Confidence 355899999999999999999999999999887732 23445556777654 7999999999999999986 444
Q ss_pred HHhcCCCcccc
Q 018506 117 DVYNGPNGLLQ 127 (355)
Q Consensus 117 ~vl~~~~~~l~ 127 (355)
+++..+.+.++
T Consensus 113 ~vy~~I~p~lk 123 (491)
T 3ulk_A 113 DVVRTVQPLMK 123 (491)
T ss_dssp HHHHHHGGGSC
T ss_pred HHHHHHHhhCC
Confidence 56665555554
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=3.1e-05 Score=73.11 Aligned_cols=66 Identities=17% Similarity=0.217 Sum_probs=54.8
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCC--CC---------------------------
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK--ET--------------------------- 94 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~--~s--------------------------- 94 (355)
.-.+|+|+|+|.+|...++.+...|.+|+++|+++++.+.+.+.|.... ++
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 250 (384)
T 1l7d_A 171 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEA 250 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhhHHH
Confidence 4478999999999999999999999999999999998887777665433 11
Q ss_pred HHHHhhcCCEEEEeC
Q 018506 95 PFEVAEASDVVITML 109 (355)
Q Consensus 95 ~~e~~~~aDiVi~~v 109 (355)
..+.++.+|+||.++
T Consensus 251 l~~~~~~aDvVi~~~ 265 (384)
T 1l7d_A 251 VLKELVKTDIAITTA 265 (384)
T ss_dssp HHHHHTTCSEEEECC
T ss_pred HHHHhCCCCEEEECC
Confidence 556778899999998
|
| >3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A | Back alignment and structure |
|---|
Probab=97.92 E-value=1.6e-05 Score=74.03 Aligned_cols=102 Identities=14% Similarity=0.182 Sum_probs=68.5
Q ss_pred CceEEEEcccHHhH-HHHHHHHHC-CCcE-EEEeCChhHHHHHHh----CCCCCCCCHHHHhhc--CCEEEEeCCCchHH
Q 018506 45 FESVGFIGLGNMGF-RMASNLMKA-GYKM-AVHDVNCNVMKMFSD----MGVPTKETPFEVAEA--SDVVITMLPSSSHV 115 (355)
Q Consensus 45 ~mkIgiIG~G~mG~-~ia~~L~~~-G~~V-~v~dr~~~~~~~l~~----~g~~~~~s~~e~~~~--aDiVi~~v~~~~~~ 115 (355)
++||||||+|.||. ..+..|.+. +++| .++|++ +.+.+.+ .++...++.++++++ .|+|++|+|+....
T Consensus 2 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~--~~~~~a~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~ 79 (349)
T 3i23_A 2 TVKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLH--VNEKAAAPFKEKGVNFTADLNELLTDPEIELITICTPAHTHY 79 (349)
T ss_dssp CEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTT--CCHHHHHHHHTTTCEEESCTHHHHSCTTCCEEEECSCGGGHH
T ss_pred eeEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCC--HHHHHHHhhCCCCCeEECCHHHHhcCCCCCEEEEeCCcHHHH
Confidence 47999999999999 566666654 5665 478887 3333332 356778899999875 89999999988666
Q ss_pred HHHhcCCCccccCCCCCCCeEEEEcC-CCCHHHHHHHHHHHh
Q 018506 116 LDVYNGPNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVS 156 (355)
Q Consensus 116 ~~vl~~~~~~l~~~~~~~~~ivi~~s-t~~~~~~~~l~~~~~ 156 (355)
+.+.. .++. +..++++.- +..+.+.+++.+...
T Consensus 80 ~~~~~----al~a----Gk~Vl~EKP~a~~~~e~~~l~~~a~ 113 (349)
T 3i23_A 80 DLAKQ----AILA----GKSVIVEKPFCDTLEHAEELFALGQ 113 (349)
T ss_dssp HHHHH----HHHT----TCEEEECSCSCSSHHHHHHHHHHHH
T ss_pred HHHHH----HHHc----CCEEEEECCCcCCHHHHHHHHHHHH
Confidence 55443 2332 123555432 345677777766654
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.91 E-value=1.4e-05 Score=73.04 Aligned_cols=65 Identities=18% Similarity=0.255 Sum_probs=50.1
Q ss_pred eEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHH----Hh------CCCCC--CCCHHHHhhcCCEEEEeCCCc
Q 018506 47 SVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMF----SD------MGVPT--KETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 47 kIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l----~~------~g~~~--~~s~~e~~~~aDiVi~~v~~~ 112 (355)
||+|||+|.||.+++..|+..|+ +|.++|+++++++.. .+ ..... +.+. +++++||+||++.+.+
T Consensus 1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~~ag~~ 78 (308)
T 2d4a_B 1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSY-EDMRGSDIVLVTAGIG 78 (308)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSCC
T ss_pred CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCH-HHhCCCCEEEEeCCCC
Confidence 79999999999999999998888 699999998876432 11 12222 2454 7889999999996544
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=97.90 E-value=1.4e-05 Score=73.24 Aligned_cols=67 Identities=18% Similarity=0.197 Sum_probs=51.7
Q ss_pred ceEEEEcccHHhHHHHHHHHHCC--CcEEEEeCChhHHHHH----HhC-----CCCCCCCHHHHhhcCCEEEEeCCCc
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAG--YKMAVHDVNCNVMKMF----SDM-----GVPTKETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G--~~V~v~dr~~~~~~~l----~~~-----g~~~~~s~~e~~~~aDiVi~~v~~~ 112 (355)
|||+|||+|.+|.+++..|+..+ .++.++|+++++++.. .+. ...+..+..+++++||+||++.+.+
T Consensus 1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~~~a~~~aD~Vii~ag~~ 78 (310)
T 2xxj_A 1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAGSYGDLEGARAVVLAAGVA 78 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTEEEEEECCCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEECCHHHhCCCCEEEECCCCC
Confidence 79999999999999999999887 5899999998877642 221 1122223467789999999997554
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=97.90 E-value=9.2e-06 Score=74.66 Aligned_cols=68 Identities=13% Similarity=0.172 Sum_probs=52.0
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC--cEEEEeCChhHHHHH----HhC-------CCCCCCCHHHHhhcCCEEEEeCC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMKMF----SDM-------GVPTKETPFEVAEASDVVITMLP 110 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~--~V~v~dr~~~~~~~l----~~~-------g~~~~~s~~e~~~~aDiVi~~v~ 110 (355)
..+||+|||+|.||.+++..|+..|+ +|.++|+++++++.. .+. .+..+.+.++ +++||+||++..
T Consensus 20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-~~daDiVIitaG 98 (330)
T 3ldh_A 20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-SAGSKLVVITAG 98 (330)
T ss_dssp CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-CSSCSEEEECCS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-hCCCCEEEEeCC
Confidence 45899999999999999999999997 899999998876542 221 1222345554 789999999964
Q ss_pred Cc
Q 018506 111 SS 112 (355)
Q Consensus 111 ~~ 112 (355)
.+
T Consensus 99 ~p 100 (330)
T 3ldh_A 99 AR 100 (330)
T ss_dssp CC
T ss_pred CC
Confidence 43
|
| >4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.88 E-value=3.6e-05 Score=71.06 Aligned_cols=106 Identities=16% Similarity=0.217 Sum_probs=71.6
Q ss_pred CCCCCCCCceEEEEcccHHhH-HHHHHHHHC-CCcE-EEEeCChhHHHHHHhCCCCCCCCHHHHhhc---CCEEEEeCCC
Q 018506 38 SQVPSCQFESVGFIGLGNMGF-RMASNLMKA-GYKM-AVHDVNCNVMKMFSDMGVPTKETPFEVAEA---SDVVITMLPS 111 (355)
Q Consensus 38 ~~~~~~~~mkIgiIG~G~mG~-~ia~~L~~~-G~~V-~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~---aDiVi~~v~~ 111 (355)
...+.|+++||||||+|.||. ..+..|.+. +.+| .++|+++++ .++...++.++++++ .|+|++|+|.
T Consensus 18 ~~~~~M~~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~~------~g~~~~~~~~~ll~~~~~vD~V~i~tp~ 91 (330)
T 4ew6_A 18 LYFQSMSPINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGTV------EGVNSYTTIEAMLDAEPSIDAVSLCMPP 91 (330)
T ss_dssp -CCCCCCCEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCCC------TTSEEESSHHHHHHHCTTCCEEEECSCH
T ss_pred hccccCCCceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChhh------cCCCccCCHHHHHhCCCCCCEEEEeCCc
Confidence 333346678999999999998 788888875 5664 578998753 466778899998865 8999999997
Q ss_pred chHHHHHhcCCCccccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhh
Q 018506 112 SSHVLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSN 157 (355)
Q Consensus 112 ~~~~~~vl~~~~~~l~~~~~~~~~ivi~~-st~~~~~~~~l~~~~~~ 157 (355)
....+-+.. .++. +..++++. -+....+.+++.+...+
T Consensus 92 ~~H~~~~~~----al~a----GkhVl~EKP~a~~~~e~~~l~~~a~~ 130 (330)
T 4ew6_A 92 QYRYEAAYK----ALVA----GKHVFLEKPPGATLSEVADLEALANK 130 (330)
T ss_dssp HHHHHHHHH----HHHT----TCEEEECSSSCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HHHc----CCcEEEeCCCCCCHHHHHHHHHHHHh
Confidence 655544433 2322 11344443 13456666777665543
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.88 E-value=2.7e-05 Score=69.71 Aligned_cols=76 Identities=17% Similarity=0.188 Sum_probs=54.7
Q ss_pred CCCceEEEEc-ccHHhHHHHHHHHHC-CCcEE-EEeCChhHH-----HHHH--hCCCCCCCCHHHHhhcCCEEEEeCCCc
Q 018506 43 CQFESVGFIG-LGNMGFRMASNLMKA-GYKMA-VHDVNCNVM-----KMFS--DMGVPTKETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 43 ~~~mkIgiIG-~G~mG~~ia~~L~~~-G~~V~-v~dr~~~~~-----~~l~--~~g~~~~~s~~e~~~~aDiVi~~v~~~ 112 (355)
|+||||+|+| +|.||+.+++.+.+. ++++. +++|+++.. ..+. ..++...++++++++++|+||-+.+ +
T Consensus 5 M~mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g~~~gv~v~~dl~~ll~~~DVVIDfT~-p 83 (272)
T 4f3y_A 5 MSSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQTGVALTDDIERVCAEADYLIDFTL-P 83 (272)
T ss_dssp -CCEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTTCCCSCBCBCCHHHHHHHCSEEEECSC-H
T ss_pred ccccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhCCCCCceecCCHHHHhcCCCEEEEcCC-H
Confidence 5689999999 899999999999865 56655 468875321 1111 1256678899999999999999886 4
Q ss_pred hHHHHHh
Q 018506 113 SHVLDVY 119 (355)
Q Consensus 113 ~~~~~vl 119 (355)
..+.+.+
T Consensus 84 ~a~~~~~ 90 (272)
T 4f3y_A 84 EGTLVHL 90 (272)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4555444
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.88 E-value=3.9e-05 Score=66.91 Aligned_cols=70 Identities=17% Similarity=0.048 Sum_probs=50.2
Q ss_pred CCCCCCceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCC-C-----CCCCHHHHhhcCCEEEEeC
Q 018506 40 VPSCQFESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGV-P-----TKETPFEVAEASDVVITML 109 (355)
Q Consensus 40 ~~~~~~mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~-~-----~~~s~~e~~~~aDiVi~~v 109 (355)
....+.|+|.|.|+ |.+|..+++.|++.|++|++.+|++++.+.+.+.++ . ...+..+++...|+||.+.
T Consensus 16 ~~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~D~vi~~a 92 (236)
T 3e8x_A 16 NLYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDIVVANLEEDFSHAFASIDAVVFAA 92 (236)
T ss_dssp -----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTTCSEEEECCTTSCCGGGGTTCSEEEECC
T ss_pred ccCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhCCCceEEEcccHHHHHHHHcCCCEEEECC
Confidence 33456689999987 999999999999999999999999998887766544 2 1134445555666666554
|
| >3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum} | Back alignment and structure |
|---|
Probab=97.87 E-value=5.3e-05 Score=71.34 Aligned_cols=106 Identities=6% Similarity=0.070 Sum_probs=73.2
Q ss_pred CCCceEEEEc-ccHHhHH-HH----HHHHHCCC-cE----------EEEeCChhHHHHHHh-CCCC-CCCCHHHHhhc--
Q 018506 43 CQFESVGFIG-LGNMGFR-MA----SNLMKAGY-KM----------AVHDVNCNVMKMFSD-MGVP-TKETPFEVAEA-- 101 (355)
Q Consensus 43 ~~~mkIgiIG-~G~mG~~-ia----~~L~~~G~-~V----------~v~dr~~~~~~~l~~-~g~~-~~~s~~e~~~~-- 101 (355)
++.+|||||| +|.||.. .+ ..+.+.+. .+ .++||++++++.+.+ .++. ..++.++++++
T Consensus 4 ~~~irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~ 83 (383)
T 3oqb_A 4 TQRLGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAKRFNIARWTTDLDAALADKN 83 (383)
T ss_dssp CEEEEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHHHTTCCCEESCHHHHHHCSS
T ss_pred CceeEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCC
Confidence 4568999999 9999998 77 77776542 22 499999999988876 5664 67899999865
Q ss_pred CCEEEEeCCCchHHHHHhcCCCccccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHh
Q 018506 102 SDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVS 156 (355)
Q Consensus 102 aDiVi~~v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~-st~~~~~~~~l~~~~~ 156 (355)
.|+|++|+|.....+-+.. .++. +..++++- -.....+.+++.+...
T Consensus 84 iD~V~i~tp~~~h~~~~~~----al~~----Gk~V~~EKP~a~~~~~~~~l~~~a~ 131 (383)
T 3oqb_A 84 DTMFFDAATTQARPGLLTQ----AINA----GKHVYCEKPIATNFEEALEVVKLAN 131 (383)
T ss_dssp CCEEEECSCSSSSHHHHHH----HHTT----TCEEEECSCSCSSHHHHHHHHHHHH
T ss_pred CCEEEECCCchHHHHHHHH----HHHC----CCeEEEcCCCCCCHHHHHHHHHHHH
Confidence 8999999998765554433 2322 11344432 2345666777766554
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=1e-05 Score=72.64 Aligned_cols=96 Identities=11% Similarity=0.073 Sum_probs=63.8
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC-CC--CC-CCCHHHHhh-cCCEEEEeCCCchHHHHH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GV--PT-KETPFEVAE-ASDVVITMLPSSSHVLDV 118 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~-g~--~~-~~s~~e~~~-~aDiVi~~v~~~~~~~~v 118 (355)
..++|.|+|+|.||.+++..|++.|++|+++||++++++.+.+. +. .. ..+.+++.+ .+|+||.++|.... ..+
T Consensus 118 ~~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivIn~t~~~~~-~~~ 196 (272)
T 1p77_A 118 PNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAGLS-GGT 196 (272)
T ss_dssp TTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC-------
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccccCCeEEeeHHHhccCCCCEEEECCCCCCC-CCC
Confidence 44789999999999999999999999999999999998887642 11 11 123333323 89999999987633 121
Q ss_pred hcCCC-ccccCCCCCCCeEEEEcCCCCHH
Q 018506 119 YNGPN-GLLQGGNSVRPQLLIDSSTIDPQ 146 (355)
Q Consensus 119 l~~~~-~~l~~~~~~~~~ivi~~st~~~~ 146 (355)
..+. ..+. ++.+++|++..+..
T Consensus 197 -~~i~~~~l~-----~~~~v~D~~y~p~~ 219 (272)
T 1p77_A 197 -ASVDAEILK-----LGSAFYDMQYAKGT 219 (272)
T ss_dssp --CCCHHHHH-----HCSCEEESCCCTTS
T ss_pred -CCCCHHHcC-----CCCEEEEeeCCCCc
Confidence 1111 1221 34688999886543
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.86 E-value=3.1e-05 Score=69.42 Aligned_cols=94 Identities=11% Similarity=0.033 Sum_probs=65.1
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHhC-CC--CCCCCHHHHh-hcCCEEEEeCCCchHHHHH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-GV--PTKETPFEVA-EASDVVITMLPSSSHVLDV 118 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~~-g~--~~~~s~~e~~-~~aDiVi~~v~~~~~~~~v 118 (355)
...++.|+|+|.+|.+++..|.+.|. +|++++|++++++++.+. +. ....+.+++. .++|+||.++|....-..
T Consensus 119 ~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~~~~~l~~~~~DivInaTp~gm~~~~- 197 (272)
T 3pwz_A 119 RNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRISRYEALEGQSFDIVVNATSASLTADL- 197 (272)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEEECSGGGTTCCCSEEEECSSGGGGTCC-
T ss_pred cCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeEeeHHHhcccCCCEEEECCCCCCCCCC-
Confidence 45789999999999999999999996 899999999999887652 11 0111233332 689999999986532110
Q ss_pred hcCC-CccccCCCCCCCeEEEEcCCCC
Q 018506 119 YNGP-NGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 119 l~~~-~~~l~~~~~~~~~ivi~~st~~ 144 (355)
..+ ...+ .++.+++|+...+
T Consensus 198 -~~i~~~~l-----~~~~~V~DlvY~P 218 (272)
T 3pwz_A 198 -PPLPADVL-----GEAALAYELAYGK 218 (272)
T ss_dssp -CCCCGGGG-----TTCSEEEESSCSC
T ss_pred -CCCCHHHh-----CcCCEEEEeecCC
Confidence 001 1122 2457899998774
|
| >4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.85 E-value=3.2e-05 Score=72.78 Aligned_cols=106 Identities=15% Similarity=0.159 Sum_probs=70.9
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHC--------CCc-EEEEeCChhHHHHHHh-CCC-CCCCCHHHHhh--cCCEEEEeC
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKA--------GYK-MAVHDVNCNVMKMFSD-MGV-PTKETPFEVAE--ASDVVITML 109 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~--------G~~-V~v~dr~~~~~~~l~~-~g~-~~~~s~~e~~~--~aDiVi~~v 109 (355)
|+.-||||||+|.||..-+..+... +.+ |.++|+++++++.+.+ .++ ...+|.+++++ +.|+|++|+
T Consensus 23 MkkirvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~Iat 102 (393)
T 4fb5_A 23 MKPLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEKATADWRALIADPEVDVVSVTT 102 (393)
T ss_dssp -CCCEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTCSEEESCHHHHHHCTTCCEEEECS
T ss_pred CCCccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCCCeecCCHHHHhcCCCCcEEEECC
Confidence 5556899999999999877766432 345 5688999999988876 455 36789999886 479999999
Q ss_pred CCchHHHHHhcCCCccccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHh
Q 018506 110 PSSSHVLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVS 156 (355)
Q Consensus 110 ~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~-st~~~~~~~~l~~~~~ 156 (355)
|+....+.++.. ++. +..+++.- -+....+.+++.+...
T Consensus 103 P~~~H~~~a~~a----l~a----GkhVl~EKPla~~~~ea~~l~~~a~ 142 (393)
T 4fb5_A 103 PNQFHAEMAIAA----LEA----GKHVWCEKPMAPAYADAERMLATAE 142 (393)
T ss_dssp CGGGHHHHHHHH----HHT----TCEEEECSCSCSSHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHH----Hhc----CCeEEEccCCcccHHHHHHhhhhHH
Confidence 998776665542 221 11344432 2344666677766654
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=97.82 E-value=2.5e-05 Score=72.06 Aligned_cols=69 Identities=16% Similarity=0.096 Sum_probs=51.3
Q ss_pred CCceEEEEc-ccHHhHHHHHHHHHCC--CcEEEEeCChhH--HHHHHhCCCC----C---CCCHHHHhhcCCEEEEeCCC
Q 018506 44 QFESVGFIG-LGNMGFRMASNLMKAG--YKMAVHDVNCNV--MKMFSDMGVP----T---KETPFEVAEASDVVITMLPS 111 (355)
Q Consensus 44 ~~mkIgiIG-~G~mG~~ia~~L~~~G--~~V~v~dr~~~~--~~~l~~~g~~----~---~~s~~e~~~~aDiVi~~v~~ 111 (355)
++|||+|+| +|.+|.+++..|...| ++|.++|++++. +..+.+.... . +++..++++++|+||++.+.
T Consensus 7 ~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~ag~ 86 (326)
T 1smk_A 7 PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGV 86 (326)
T ss_dssp -CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECCCC
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcCCc
Confidence 458999999 8999999999999998 899999988762 2234432211 1 22556788999999999753
Q ss_pred c
Q 018506 112 S 112 (355)
Q Consensus 112 ~ 112 (355)
+
T Consensus 87 ~ 87 (326)
T 1smk_A 87 P 87 (326)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00063 Score=59.89 Aligned_cols=114 Identities=17% Similarity=0.141 Sum_probs=76.4
Q ss_pred CCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCC
Q 018506 88 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW 167 (355)
Q Consensus 88 g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~ 167 (355)
|+.++++..|+++++|++|+-+|-......++..+-+.+ +++.+|.+++|++|...-.+.+.+.+. ..|
T Consensus 128 GVkVtsDD~EAvk~AEi~IlftPfG~~t~~Iakkii~~l-----pEgAII~nTCTipp~~ly~~le~l~R~----Dvg-- 196 (358)
T 2b0j_A 128 GLKVTSDDREAVEGADIVITWLPKGNKQPDIIKKFADAI-----PEGAIVTHACTIPTTKFAKIFKDLGRE----DLN-- 196 (358)
T ss_dssp TCEEESCHHHHHTTCSEEEECCTTCTTHHHHHHHHGGGS-----CTTCEEEECSSSCHHHHHHHHHHTTCT----TSE--
T ss_pred CcEeecchHHHhcCCCEEEEecCCCCCcHHHHHHHHhhC-----cCCCEEecccCCCHHHHHHHHHHhCcc----cCC--
Confidence 678889999999999999999998865566665543333 477899999999987655544443321 111
Q ss_pred CCceEEeCCCCCChHHHhcCceEEEec-CCHHHHHHHHHHHHHcCCCeEEeC
Q 018506 168 ENPVMLDAPVSGGVLAAEAGTLTFMVG-GSEDAYQAAKPLFLSMGKNTIYCG 218 (355)
Q Consensus 168 ~~~~~~~~pv~g~~~~~~~g~~~~~~g-g~~~~~~~v~~ll~~~g~~~~~~g 218 (355)
...|--+.+-|. .|+.+.-.+ .+++..+++-+|.+..++..+.+.
T Consensus 197 -IsS~HPaaVPgt-----~Gq~~~g~~yAtEEqIeklveLaksa~k~ay~vP 242 (358)
T 2b0j_A 197 -ITSYHPGCVPEM-----KGQVYIAEGYASEEAVNKLYEIGKIARGKAFKMP 242 (358)
T ss_dssp -EEECBCSSCTTT-----CCCEEEEESSSCHHHHHHHHHHHHHHHSCEEEEE
T ss_pred -eeccCCCCCCCC-----CCccccccccCCHHHHHHHHHHHHHhCCCeEecc
Confidence 011222222222 555343333 489999999999999999877543
|
| >3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.80 E-value=7e-05 Score=68.77 Aligned_cols=104 Identities=14% Similarity=0.122 Sum_probs=72.2
Q ss_pred CCceEEEEcc-cHHhHHHHHHHHHCCCc-EEEEeCChhHHHHHHhC--CCCCCCCHHHHh-----------hcCCEEEEe
Q 018506 44 QFESVGFIGL-GNMGFRMASNLMKAGYK-MAVHDVNCNVMKMFSDM--GVPTKETPFEVA-----------EASDVVITM 108 (355)
Q Consensus 44 ~~mkIgiIG~-G~mG~~ia~~L~~~G~~-V~v~dr~~~~~~~l~~~--g~~~~~s~~e~~-----------~~aDiVi~~ 108 (355)
.|+||||||+ |.||...+..|.+.+.+ |.++|+++++. .+.+. +....++.++++ .+.|+|++|
T Consensus 2 ~mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~-~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~~vD~V~I~ 80 (318)
T 3oa2_A 2 HMKNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSVG-IIDSISPQSEFFTEFEFFLDHASNLKRDSATALDYVSIC 80 (318)
T ss_dssp -CCEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCCG-GGGGTCTTCEEESSHHHHHHHHHHHTTSTTTSCCEEEEC
T ss_pred CceEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHHH-HHHhhCCCCcEECCHHHHHHhhhhhhhccCCCCcEEEEC
Confidence 4689999999 78999999999998877 45789988763 33332 455677888876 468999999
Q ss_pred CCCchHHHHHhcCCCccccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHh
Q 018506 109 LPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVS 156 (355)
Q Consensus 109 v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~-st~~~~~~~~l~~~~~ 156 (355)
+|+....+-+.. .++. +..++++- -+..+.+.+++.+...
T Consensus 81 tP~~~H~~~~~~----al~a----GkhVl~EKPla~~~~ea~~l~~~a~ 121 (318)
T 3oa2_A 81 SPNYLHYPHIAA----GLRL----GCDVICEKPLVPTPEMLDQLAVIER 121 (318)
T ss_dssp SCGGGHHHHHHH----HHHT----TCEEEECSSCCSCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHH----HHHC----CCeEEEECCCcCCHHHHHHHHHHHH
Confidence 998766555443 2322 11355543 2345677777766554
|
| >1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=5.1e-05 Score=68.86 Aligned_cols=103 Identities=17% Similarity=0.092 Sum_probs=69.9
Q ss_pred CCCCceEEEEcccHHhHHHHHHHHH----CCCcE-EEEeCChhHHHHHHhCCCCCCCCHHHHhh--cCCEEEEeCCCchH
Q 018506 42 SCQFESVGFIGLGNMGFRMASNLMK----AGYKM-AVHDVNCNVMKMFSDMGVPTKETPFEVAE--ASDVVITMLPSSSH 114 (355)
Q Consensus 42 ~~~~mkIgiIG~G~mG~~ia~~L~~----~G~~V-~v~dr~~~~~~~l~~~g~~~~~s~~e~~~--~aDiVi~~v~~~~~ 114 (355)
+++++||||||+|.||...+..|.+ .+.++ .++||++.. ...++. ..+.+++++ +.|+|++|+|+...
T Consensus 4 ~~~~~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~a----~~~g~~-~~~~~ell~~~~vD~V~i~tp~~~H 78 (294)
T 1lc0_A 4 NSGKFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELG----SLDEVR-QISLEDALRSQEIDVAYICSESSSH 78 (294)
T ss_dssp CCCSEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCCC----EETTEE-BCCHHHHHHCSSEEEEEECSCGGGH
T ss_pred CCCcceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchHHH----HHcCCC-CCCHHHHhcCCCCCEEEEeCCcHhH
Confidence 3567899999999999999998865 34554 477876321 123443 478999886 68999999998876
Q ss_pred HHHHhcCCCccccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhh
Q 018506 115 VLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSN 157 (355)
Q Consensus 115 ~~~vl~~~~~~l~~~~~~~~~ivi~~-st~~~~~~~~l~~~~~~ 157 (355)
.+.+.. .++. +..++++. .+..+.+.+++.+...+
T Consensus 79 ~~~~~~----al~a----GkhVl~EKPla~~~~ea~~l~~~a~~ 114 (294)
T 1lc0_A 79 EDYIRQ----FLQA----GKHVLVEYPMTLSFAAAQELWELAAQ 114 (294)
T ss_dssp HHHHHH----HHHT----TCEEEEESCSCSCHHHHHHHHHHHHH
T ss_pred HHHHHH----HHHC----CCcEEEeCCCCCCHHHHHHHHHHHHH
Confidence 665543 3332 22466664 45567777777776643
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=97.79 E-value=4.7e-05 Score=71.19 Aligned_cols=68 Identities=15% Similarity=0.171 Sum_probs=54.9
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCC-------CCCHHHHhhcCCEEEEeCCCc
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT-------KETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~-------~~s~~e~~~~aDiVi~~v~~~ 112 (355)
..+|.|+|+|.+|..++..+...|.+|+++||++++.+.+.+.+... ..+..+.+..+|+||.|++.+
T Consensus 167 ~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVI~~~~~~ 241 (361)
T 1pjc_A 167 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVP 241 (361)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCT
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCceeEeeeCCHHHHHHHHcCCCEEEECCCcC
Confidence 37899999999999999999999999999999999988876543221 123445667899999998654
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=97.79 E-value=3.3e-05 Score=71.11 Aligned_cols=68 Identities=18% Similarity=0.268 Sum_probs=51.8
Q ss_pred CCCCceEEEEcccHHhHHHHHHHHHCCC--cEEEEeCChhHHHH----HHhC----C---CCCCCCHHHHhhcCCEEEEe
Q 018506 42 SCQFESVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMKM----FSDM----G---VPTKETPFEVAEASDVVITM 108 (355)
Q Consensus 42 ~~~~mkIgiIG~G~mG~~ia~~L~~~G~--~V~v~dr~~~~~~~----l~~~----g---~~~~~s~~e~~~~aDiVi~~ 108 (355)
....+||+|||+|.||.+++..|+.+|+ ++.++|+++++++. +.+. . +..+.+. +.+++||+||++
T Consensus 16 ~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~-~~~~~aDiVvi~ 94 (331)
T 4aj2_A 16 QVPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDY-SVTANSKLVIIT 94 (331)
T ss_dssp -CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSG-GGGTTEEEEEEC
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCH-HHhCCCCEEEEc
Confidence 3466899999999999999999999987 89999999887654 3321 1 1123444 468899999999
Q ss_pred CC
Q 018506 109 LP 110 (355)
Q Consensus 109 v~ 110 (355)
..
T Consensus 95 aG 96 (331)
T 4aj2_A 95 AG 96 (331)
T ss_dssp CS
T ss_pred cC
Confidence 64
|
| >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=2.9e-05 Score=70.22 Aligned_cols=105 Identities=15% Similarity=0.147 Sum_probs=68.9
Q ss_pred CCCceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhh--cCCEEEEeCCCchHHHHHh
Q 018506 43 CQFESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAE--ASDVVITMLPSSSHVLDVY 119 (355)
Q Consensus 43 ~~~mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~--~aDiVi~~v~~~~~~~~vl 119 (355)
.+.+||+|+|+ |.||..+++.+.+.|++ .++..+|.+... ...|.....|++|+.+ ..|++++++|.. ...+++
T Consensus 5 ~~~~rVaViG~sG~~G~~~~~~l~~~g~~-~V~~V~p~~~g~-~~~G~~vy~sl~el~~~~~~D~viI~tP~~-~~~~~~ 81 (288)
T 2nu8_A 5 DKNTKVICQGFTGSQGTFHSEQAIAYGTK-MVGGVTPGKGGT-THLGLPVFNTVREAVAATGATASVIYVPAP-FCKDSI 81 (288)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTTC-EETTEEEESSHHHHHHHHCCCEEEECCCGG-GHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCe-EEEEeCCCcccc-eeCCeeccCCHHHHhhcCCCCEEEEecCHH-HHHHHH
Confidence 35589999998 99999999999998988 344555543200 1256777889999987 899999999976 444444
Q ss_pred cCCCccccCCCCCCCeEEEEcCCCC-HHHHHHHHHHHhh
Q 018506 120 NGPNGLLQGGNSVRPQLLIDSSTID-PQTSRNISAAVSN 157 (355)
Q Consensus 120 ~~~~~~l~~~~~~~~~ivi~~st~~-~~~~~~l~~~~~~ 157 (355)
.. .++. +-+.+|..+... ....+++.+...+
T Consensus 82 ~e---a~~~----Gi~~iVi~t~G~~~~~~~~l~~~A~~ 113 (288)
T 2nu8_A 82 LE---AIDA----GIKLIITITEGIPTLDMLTVKVKLDE 113 (288)
T ss_dssp HH---HHHT----TCSEEEECCCCCCHHHHHHHHHHHHH
T ss_pred HH---HHHC----CCCEEEEECCCCCHHHHHHHHHHHHH
Confidence 33 2221 113445455544 4444566665543
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.78 E-value=2.6e-05 Score=69.87 Aligned_cols=66 Identities=14% Similarity=0.244 Sum_probs=52.9
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHhC-CCCCCCCHHHHhhcCCEEEEeCCCc
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~~-g~~~~~s~~e~~~~aDiVi~~v~~~ 112 (355)
..++.|||+|.+|.+++..|.+.|. +|+++||++++++.+.+. +.....+.. ..++|+||.++|..
T Consensus 119 ~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~~~~~~~~~--~~~~DivInaTp~g 186 (271)
T 1npy_A 119 NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTSIG 186 (271)
T ss_dssp TSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSSTT
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCccchhhh--cccCCEEEECCCCC
Confidence 3689999999999999999999997 799999999999888753 332221222 35899999999875
|
| >3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=8.2e-05 Score=68.08 Aligned_cols=104 Identities=16% Similarity=0.174 Sum_probs=72.1
Q ss_pred CCceEEEEcc-cHHhHHHHHHHHHCCCc-EEEEeCChhHHHHHHhC--CCCCCCCHHHHh----------hcCCEEEEeC
Q 018506 44 QFESVGFIGL-GNMGFRMASNLMKAGYK-MAVHDVNCNVMKMFSDM--GVPTKETPFEVA----------EASDVVITML 109 (355)
Q Consensus 44 ~~mkIgiIG~-G~mG~~ia~~L~~~G~~-V~v~dr~~~~~~~l~~~--g~~~~~s~~e~~----------~~aDiVi~~v 109 (355)
.|+||||||+ |.||...+..|.+.+.+ |.++|+++++. .+.+. +....++.++++ .+.|+|++|+
T Consensus 2 ~mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~-~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~vD~V~I~t 80 (312)
T 3o9z_A 2 HMTRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNVG-LVDSFFPEAEFFTEPEAFEAYLEDLRDRGEGVDYLSIAS 80 (312)
T ss_dssp -CCEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCCG-GGGGTCTTCEEESCHHHHHHHHHHHHHTTCCCSEEEECS
T ss_pred CceEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHHH-HHHhhCCCCceeCCHHHHHHHhhhhcccCCCCcEEEECC
Confidence 4689999999 78999999999998877 45889998873 33332 456677888887 5789999999
Q ss_pred CCchHHHHHhcCCCccccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHh
Q 018506 110 PSSSHVLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVS 156 (355)
Q Consensus 110 ~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~-st~~~~~~~~l~~~~~ 156 (355)
|+....+-+.. .++. +..++++- -+....+.+++.+...
T Consensus 81 P~~~H~~~~~~----al~a----GkhVl~EKPla~~~~ea~~l~~~a~ 120 (312)
T 3o9z_A 81 PNHLHYPQIRM----ALRL----GANALSEKPLVLWPEEIARLKELEA 120 (312)
T ss_dssp CGGGHHHHHHH----HHHT----TCEEEECSSSCSCHHHHHHHHHHHH
T ss_pred CchhhHHHHHH----HHHC----CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 98866555443 2322 11344442 2345667777766654
|
| >4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=97.77 E-value=3.1e-05 Score=72.72 Aligned_cols=104 Identities=16% Similarity=0.166 Sum_probs=72.8
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCC--------Cc-EEEEeCChhHHHHHHh-CCC-CCCCCHHHHhh--cCCEEEEeC
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAG--------YK-MAVHDVNCNVMKMFSD-MGV-PTKETPFEVAE--ASDVVITML 109 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G--------~~-V~v~dr~~~~~~~l~~-~g~-~~~~s~~e~~~--~aDiVi~~v 109 (355)
|++.||||||+|.||...+..+.+.. .+ +.++|+++++++.+.+ .|+ ...+|.+++++ +.|+|++|+
T Consensus 4 M~klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~~~~~~d~~~ll~~~~iDaV~I~t 83 (390)
T 4h3v_A 4 MTNLGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGWSTTETDWRTLLERDDVQLVDVCT 83 (390)
T ss_dssp CCEEEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHHTCSEEESCHHHHTTCTTCSEEEECS
T ss_pred CCcCcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeC
Confidence 45568999999999999888887542 24 4588999999988876 454 45688999885 479999999
Q ss_pred CCchHHHHHhcCCCccccCCCCCCCeEEEEc-CCCCHHHHHHHHHH
Q 018506 110 PSSSHVLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAA 154 (355)
Q Consensus 110 ~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~-st~~~~~~~~l~~~ 154 (355)
|+....+-++.. ++. +..+++.- -+....+.+++.+.
T Consensus 84 P~~~H~~~~~~a----l~a----GkhVl~EKPla~t~~ea~~l~~~ 121 (390)
T 4h3v_A 84 PGDSHAEIAIAA----LEA----GKHVLCEKPLANTVAEAEAMAAA 121 (390)
T ss_dssp CGGGHHHHHHHH----HHT----TCEEEEESSSCSSHHHHHHHHHH
T ss_pred ChHHHHHHHHHH----HHc----CCCceeecCcccchhHHHHHHHH
Confidence 998776665542 322 11355543 23446666777444
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=97.76 E-value=3.3e-05 Score=74.37 Aligned_cols=69 Identities=20% Similarity=0.181 Sum_probs=54.1
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC-C-C-----CCC--CCHHHHhhcCCEEEEeCCCc
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-G-V-----PTK--ETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~-g-~-----~~~--~s~~e~~~~aDiVi~~v~~~ 112 (355)
.+++|.|+|+|.+|.+++..|++.|++|++++|++++++.+.+. + . ... .+..++++++|+||.++|..
T Consensus 2 ~~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~~~ 79 (450)
T 1ff9_A 2 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYT 79 (450)
T ss_dssp CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECCC--
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEECCccc
Confidence 45789999999999999999999999999999999998877642 1 1 111 13446677899999999864
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=3.1e-05 Score=70.63 Aligned_cols=92 Identities=18% Similarity=0.116 Sum_probs=64.7
Q ss_pred CCCCceEEEEcccHH-hHHHHHHHHHCCCcEEEEeCChhHH----HHHHhCCCC-C-----C--CCHHHHhhcCCEEEEe
Q 018506 42 SCQFESVGFIGLGNM-GFRMASNLMKAGYKMAVHDVNCNVM----KMFSDMGVP-T-----K--ETPFEVAEASDVVITM 108 (355)
Q Consensus 42 ~~~~mkIgiIG~G~m-G~~ia~~L~~~G~~V~v~dr~~~~~----~~l~~~g~~-~-----~--~s~~e~~~~aDiVi~~ 108 (355)
.....++.|||.|.| |..+|+.|...|.+|+++||+..+. +.+... .+ . + .++.+.+.++|+||.+
T Consensus 174 ~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~-~~~~t~~~~t~~~~L~e~l~~ADIVIsA 252 (320)
T 1edz_A 174 RLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLN-KHHVEDLGEYSEDLLKKCSLDSDVVITG 252 (320)
T ss_dssp TTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCC-CCEEEEEEECCHHHHHHHHHHCSEEEEC
T ss_pred CCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhh-cccccccccccHhHHHHHhccCCEEEEC
Confidence 345678999999976 9999999999999999999984432 222211 11 1 1 4678889999999999
Q ss_pred CCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCC
Q 018506 109 LPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 109 v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~ 144 (355)
++.+.. ++. ..+++ ++.++||.+...
T Consensus 253 tg~p~~---vI~--~e~vk-----~GavVIDVgi~r 278 (320)
T 1edz_A 253 VPSENY---KFP--TEYIK-----EGAVCINFACTK 278 (320)
T ss_dssp CCCTTC---CBC--TTTSC-----TTEEEEECSSSC
T ss_pred CCCCcc---eeC--HHHcC-----CCeEEEEcCCCc
Confidence 987521 122 12342 568999998753
|
| >4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=97.73 E-value=4.5e-05 Score=72.55 Aligned_cols=104 Identities=18% Similarity=0.233 Sum_probs=74.0
Q ss_pred CceEEEEcccHHhHHHHHHHHHCC---------Cc-EEEEeCChhHHHHHHh-CCC-CCCCCHHHHhh--cCCEEEEeCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAG---------YK-MAVHDVNCNVMKMFSD-MGV-PTKETPFEVAE--ASDVVITMLP 110 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G---------~~-V~v~dr~~~~~~~l~~-~g~-~~~~s~~e~~~--~aDiVi~~v~ 110 (355)
++||||||+|.||...+..|.+.+ .+ |.++|+++++++++.+ .++ ...+|.+++++ +.|+|++|+|
T Consensus 26 klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~~~~y~d~~~ll~~~~vD~V~I~tp 105 (412)
T 4gqa_A 26 RLNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGAEKAYGDWRELVNDPQVDVVDITSP 105 (412)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSC
T ss_pred cceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCCCeEECCHHHHhcCCCCCEEEECCC
Confidence 479999999999999998887642 35 4578999999988876 455 46789999986 5799999999
Q ss_pred CchHHHHHhcCCCccccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHh
Q 018506 111 SSSHVLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVS 156 (355)
Q Consensus 111 ~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~-st~~~~~~~~l~~~~~ 156 (355)
+....+-++.. ++. +..+++.- -+....+.+++.+...
T Consensus 106 ~~~H~~~~~~a----l~a----GkhVl~EKP~a~~~~ea~~l~~~a~ 144 (412)
T 4gqa_A 106 NHLHYTMAMAA----IAA----GKHVYCEKPLAVNEQQAQEMAQAAR 144 (412)
T ss_dssp GGGHHHHHHHH----HHT----TCEEEEESCSCSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHH----HHc----CCCeEeecCCcCCHHHHHHHHHHHH
Confidence 88766655442 322 11345443 2345666777766554
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00011 Score=70.68 Aligned_cols=91 Identities=15% Similarity=0.177 Sum_probs=69.3
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHH-HhcCC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLD-VYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~-vl~~~ 122 (355)
.-+++.|+|+|.+|..+|+.|...|.+|+++|+++.+.......++. ..+.+++...+|+|+.+......+.. .+.
T Consensus 264 ~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~g~d-v~~lee~~~~aDvVi~atG~~~vl~~e~l~-- 340 (488)
T 3ond_A 264 AGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQATMEGLQ-VLTLEDVVSEADIFVTTTGNKDIIMLDHMK-- 340 (488)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCE-ECCGGGTTTTCSEEEECSSCSCSBCHHHHT--
T ss_pred cCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhCCc-cCCHHHHHHhcCEEEeCCCChhhhhHHHHH--
Confidence 44789999999999999999999999999999999888777776654 34778888899999988765433222 221
Q ss_pred CccccCCCCCCCeEEEEcCCCC
Q 018506 123 NGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.+ .++.+|++.+...
T Consensus 341 --~m-----k~gaiVvNaG~~~ 355 (488)
T 3ond_A 341 --KM-----KNNAIVCNIGHFD 355 (488)
T ss_dssp --TS-----CTTEEEEESSSTT
T ss_pred --hc-----CCCeEEEEcCCCC
Confidence 12 2456888887653
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.67 E-value=4.8e-05 Score=73.50 Aligned_cols=96 Identities=19% Similarity=0.215 Sum_probs=66.0
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHC-CCcEEEEeCChhHHHHHHhC-CCCC----CC---CHHHHhhcCCEEEEeCCCch
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKA-GYKMAVHDVNCNVMKMFSDM-GVPT----KE---TPFEVAEASDVVITMLPSSS 113 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~-G~~V~v~dr~~~~~~~l~~~-g~~~----~~---s~~e~~~~aDiVi~~v~~~~ 113 (355)
..+++|.|+|+|.+|.+++..|++. |++|++++|++++++.+.+. ++.. .. ++.++++.+|+||.|+|...
T Consensus 21 l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvVIn~tp~~~ 100 (467)
T 2axq_A 21 HMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVISLIPYTF 100 (467)
T ss_dssp --CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEECSCGGG
T ss_pred CCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEEEECCchhh
Confidence 3457899999999999999999998 78999999999998887653 3211 11 34556789999999998652
Q ss_pred HHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHH
Q 018506 114 HVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQT 147 (355)
Q Consensus 114 ~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~ 147 (355)
. ..+... .+. .+..++|.+...|..
T Consensus 101 ~-~~v~~a---~l~-----~g~~vvd~~~~~p~~ 125 (467)
T 2axq_A 101 H-PNVVKS---AIR-----TKTDVVTSSYISPAL 125 (467)
T ss_dssp H-HHHHHH---HHH-----HTCEEEECSCCCHHH
T ss_pred h-HHHHHH---HHh-----cCCEEEEeecCCHHH
Confidence 2 122211 121 234677776655553
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=97.66 E-value=7.9e-05 Score=67.16 Aligned_cols=97 Identities=20% Similarity=0.196 Sum_probs=66.7
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHhC------CCC--CC--CCHHHHhhcCCEEEEeCCCc
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM------GVP--TK--ETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~~------g~~--~~--~s~~e~~~~aDiVi~~v~~~ 112 (355)
...++.|+|+|.+|.+++..|++.|. +|++++|++++++.+.+. +.. .. +++.+.+.++|+||-++|..
T Consensus 126 ~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~DiVInaTp~G 205 (283)
T 3jyo_A 126 KLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPMG 205 (283)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHSSEEEECSSTT
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcCCEEEECCCCC
Confidence 45689999999999999999999998 699999999998876541 111 22 36778888999999999853
Q ss_pred hHHHHHhcCCCccccCCCCCCCeEEEEcCCCCH
Q 018506 113 SHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDP 145 (355)
Q Consensus 113 ~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~ 145 (355)
-.-..-..-...++ .++.+++|+.-.+.
T Consensus 206 m~~~~~~pi~~~~l-----~~~~~v~DlvY~P~ 233 (283)
T 3jyo_A 206 MPAHPGTAFDVSCL-----TKDHWVGDVVYMPI 233 (283)
T ss_dssp STTSCSCSSCGGGC-----CTTCEEEECCCSSS
T ss_pred CCCCCCCCCCHHHh-----CCCCEEEEecCCCC
Confidence 11000000001122 24568889877653
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=5.6e-05 Score=68.41 Aligned_cols=64 Identities=14% Similarity=0.286 Sum_probs=47.5
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCC--cEEEEeCChhHHH----HHHh----CC--CCC-CCCHHHHhhcCCEEEEeC
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMK----MFSD----MG--VPT-KETPFEVAEASDVVITML 109 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~--~V~v~dr~~~~~~----~l~~----~g--~~~-~~s~~e~~~~aDiVi~~v 109 (355)
|||+|||+|.+|.++|..|..++. ++.++|+++++++ .+.. .+ ... .++..+.+++||+||++.
T Consensus 1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~~~~~~aDvVvitA 77 (294)
T 2x0j_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVTA 77 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCGGGGTTCSEEEECC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCCCHHHhCCCCEEEEec
Confidence 899999999999999999988774 7999999986643 2322 11 111 123346778999999996
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=97.65 E-value=2.7e-05 Score=68.06 Aligned_cols=71 Identities=11% Similarity=0.088 Sum_probs=47.2
Q ss_pred CCCCCCceEEEEc-ccHHhHHHHHHHHHCC-CcEEEEeCChhHHHHHHhCCC-----CC--CCCHHHHhhcCCEEEEeCC
Q 018506 40 VPSCQFESVGFIG-LGNMGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDMGV-----PT--KETPFEVAEASDVVITMLP 110 (355)
Q Consensus 40 ~~~~~~mkIgiIG-~G~mG~~ia~~L~~~G-~~V~v~dr~~~~~~~l~~~g~-----~~--~~s~~e~~~~aDiVi~~v~ 110 (355)
...+.|++|.|.| .|.+|..+++.|++.| ++|++++|++++.+.+...++ .. ..+..++++.+|+||.+..
T Consensus 18 ~~~~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~ 97 (236)
T 3qvo_A 18 YFQGHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANLT 97 (236)
T ss_dssp ----CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHHHTTCSEEEEECC
T ss_pred eecCcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHHhcCCCEEEEcCC
Confidence 3345667899998 7999999999999999 899999999887554332221 11 1123345566677766654
|
| >2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=1.5e-05 Score=68.73 Aligned_cols=69 Identities=19% Similarity=0.241 Sum_probs=46.9
Q ss_pred CCceEEEEcccHHhHHHHHH--HHHCCCcE-EEEeCChhHHHHHHh-CCCCCCCCHHHHhhcCCEEEEeCCCc
Q 018506 44 QFESVGFIGLGNMGFRMASN--LMKAGYKM-AVHDVNCNVMKMFSD-MGVPTKETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~--L~~~G~~V-~v~dr~~~~~~~l~~-~g~~~~~s~~e~~~~aDiVi~~v~~~ 112 (355)
..++|+|||+|++|..+++. +...|+++ .++|+++++...... .++...+++.+.+++.|+|++|+|+.
T Consensus 84 ~~~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~eli~~~D~ViIAvPs~ 156 (215)
T 2vt3_A 84 EMTDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGTEVGGVPVYNLDDLEQHVKDESVAILTVPAV 156 (215)
T ss_dssp ---CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTCEETTEEEEEGGGHHHHCSSCCEEEECSCHH
T ss_pred CCCEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHhcCCeeechhhHHHHHHhCCEEEEecCch
Confidence 34789999999999999994 44567775 577999988765332 12333567788876669999999974
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00016 Score=65.03 Aligned_cols=102 Identities=14% Similarity=0.124 Sum_probs=64.8
Q ss_pred CCceEEEEc-ccHHhHHHHHHHHHC-CCcE-EEEeCChhH-----HHHHH---hCCCCCCCCHHHHhhcCCEEEEeCCCc
Q 018506 44 QFESVGFIG-LGNMGFRMASNLMKA-GYKM-AVHDVNCNV-----MKMFS---DMGVPTKETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 44 ~~mkIgiIG-~G~mG~~ia~~L~~~-G~~V-~v~dr~~~~-----~~~l~---~~g~~~~~s~~e~~~~aDiVi~~v~~~ 112 (355)
.++||+|+| +|.||+.+++.+.+. +.++ .+++++++. +..+. ..|+.+++++++++.++|+||-+.+ +
T Consensus 20 ~~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v~~dl~~ll~~aDVvIDFT~-p 98 (288)
T 3ijp_A 20 GSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSDFLGVRITDDPESAFSNTEGILDFSQ-P 98 (288)
T ss_dssp -CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBCBSCHHHHTTSCSEEEECSC-H
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccCcCCceeeCCHHHHhcCCCEEEEcCC-H
Confidence 457999999 999999999998864 5664 466886432 12222 2467788999999999999998775 3
Q ss_pred hHHHHHhcCCCccccCCCCCCCeEEEEcCCCC-HHHHHHHHHH
Q 018506 113 SHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID-PQTSRNISAA 154 (355)
Q Consensus 113 ~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~-~~~~~~l~~~ 154 (355)
..+.+.+.. .++ .+.-+|..||+. ++...++.+.
T Consensus 99 ~a~~~~~~~---~l~-----~Gv~vViGTTG~~~e~~~~L~~a 133 (288)
T 3ijp_A 99 QASVLYANY---AAQ-----KSLIHIIGTTGFSKTEEAQIADF 133 (288)
T ss_dssp HHHHHHHHH---HHH-----HTCEEEECCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHH---HHH-----cCCCEEEECCCCCHHHHHHHHHH
Confidence 444443322 232 233455555554 4343444443
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.62 E-value=4.3e-05 Score=73.84 Aligned_cols=69 Identities=16% Similarity=0.317 Sum_probs=54.7
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh-CCCCC----CCC---HHHH-hhcCCEEEEeCCCc
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-MGVPT----KET---PFEV-AEASDVVITMLPSS 112 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~-~g~~~----~~s---~~e~-~~~aDiVi~~v~~~ 112 (355)
..|||-|+|+|.+|..+|+.|.+.||+|++.|+++++++.+.+ .++.. .++ +.++ +++||++|.++.++
T Consensus 2 ~~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t~~D 79 (461)
T 4g65_A 2 NAMKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAVTNTD 79 (461)
T ss_dssp CCEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEECCSCH
T ss_pred CcCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEcCCh
Confidence 3599999999999999999999999999999999999998875 34321 122 3333 46899988877765
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00015 Score=64.34 Aligned_cols=76 Identities=13% Similarity=0.218 Sum_probs=60.3
Q ss_pred CCceEEEEcccH-HhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 44 QFESVGFIGLGN-MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~G~-mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
.-.++.|||.|. +|.++|..|...|.+|++++++ +.++.+.++++|+||.+++.+.. +.
T Consensus 149 ~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~--------------t~~L~~~~~~ADIVI~Avg~p~~----I~-- 208 (276)
T 3ngx_A 149 HENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSK--------------TKDIGSMTRSSKIVVVAVGRPGF----LN-- 208 (276)
T ss_dssp CSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT--------------CSCHHHHHHHSSEEEECSSCTTC----BC--
T ss_pred CCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCC--------------cccHHHhhccCCEEEECCCCCcc----cc--
Confidence 457899999985 8999999999999999999874 35788999999999999987632 22
Q ss_pred CccccCCCCCCCeEEEEcCCCC
Q 018506 123 NGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~ 144 (355)
..+++ ++.+|||.+...
T Consensus 209 ~~~vk-----~GavVIDvgi~~ 225 (276)
T 3ngx_A 209 REMVT-----PGSVVIDVGINY 225 (276)
T ss_dssp GGGCC-----TTCEEEECCCEE
T ss_pred Hhhcc-----CCcEEEEeccCc
Confidence 12443 567999987654
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00012 Score=66.94 Aligned_cols=74 Identities=24% Similarity=0.267 Sum_probs=52.6
Q ss_pred CCceEEEEcccHHhHHHHHHHHH-C-CCc-EEEEeCChhH-HHHHH-hCCCCC-CCCHHHHhh-----cCCEEEEeCCCc
Q 018506 44 QFESVGFIGLGNMGFRMASNLMK-A-GYK-MAVHDVNCNV-MKMFS-DMGVPT-KETPFEVAE-----ASDVVITMLPSS 112 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~-~-G~~-V~v~dr~~~~-~~~l~-~~g~~~-~~s~~e~~~-----~aDiVi~~v~~~ 112 (355)
+++||||||+|.+|..++..|.+ . +.+ +.++|+++++ ...+. +.|... .++.+++++ +.|+||+|+|..
T Consensus 3 ~~irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~~~~~~~e~ll~~~~~~~iDvV~~atp~~ 82 (312)
T 1nvm_B 3 QKLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSAS 82 (312)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCHH
T ss_pred CCCEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCCcccCCHHHHHhccCCCCCcEEEECCChH
Confidence 35799999999999999999966 3 445 4577999887 45543 456543 345666653 579999999965
Q ss_pred hHHHH
Q 018506 113 SHVLD 117 (355)
Q Consensus 113 ~~~~~ 117 (355)
...+.
T Consensus 83 ~h~~~ 87 (312)
T 1nvm_B 83 AHVQN 87 (312)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44333
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00012 Score=67.41 Aligned_cols=65 Identities=15% Similarity=0.261 Sum_probs=51.7
Q ss_pred CCceEEEEcccHHhHH-HHHHHHHCCCcEEEEeCCh--hHHHHHHhCCCCCC--CCHHHHh-hcCCEEEEe
Q 018506 44 QFESVGFIGLGNMGFR-MASNLMKAGYKMAVHDVNC--NVMKMFSDMGVPTK--ETPFEVA-EASDVVITM 108 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~-ia~~L~~~G~~V~v~dr~~--~~~~~l~~~g~~~~--~s~~e~~-~~aDiVi~~ 108 (355)
.++||.|||.|.+|.+ +|+.|.+.|++|+++|+++ ...+.+.+.|+.+. .+++++. .++|+||++
T Consensus 3 ~~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~v~~g~~~~~l~~~~~d~vV~S 73 (326)
T 3eag_A 3 AMKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVYEGFDAAQLDEFKADVYVIG 73 (326)
T ss_dssp CCCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEEESCCGGGGGSCCCSEEEEC
T ss_pred CCcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCEEECCCCHHHcCCCCCCEEEEC
Confidence 4689999999999995 9999999999999999864 35667877777543 3444554 479999987
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=6.1e-05 Score=67.54 Aligned_cols=76 Identities=17% Similarity=0.236 Sum_probs=51.6
Q ss_pred CCCceEEEEcc-cHHhHHHHHHHHH-CCCcEE-EEeCChhHH-----HHH---HhCCCCCCCCHHHHhhcCCEEEEeCCC
Q 018506 43 CQFESVGFIGL-GNMGFRMASNLMK-AGYKMA-VHDVNCNVM-----KMF---SDMGVPTKETPFEVAEASDVVITMLPS 111 (355)
Q Consensus 43 ~~~mkIgiIG~-G~mG~~ia~~L~~-~G~~V~-v~dr~~~~~-----~~l---~~~g~~~~~s~~e~~~~aDiVi~~v~~ 111 (355)
+++|||+|+|+ |.||..+++.+.+ .|+++. ++|+++++. ..+ ...++...++++++++++|+||-+.+
T Consensus 3 ~~~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~~g~~~~~v~~~~dl~~~l~~~DvVIDft~- 81 (273)
T 1dih_A 3 DANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTR- 81 (273)
T ss_dssp CCBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECSC-
T ss_pred CCCcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHHcCCCcCCceecCCHHHHhcCCCEEEEcCC-
Confidence 45689999998 9999999998874 577865 778876431 111 11234456677787888999995553
Q ss_pred chHHHHHh
Q 018506 112 SSHVLDVY 119 (355)
Q Consensus 112 ~~~~~~vl 119 (355)
|....+.+
T Consensus 82 p~~~~~~~ 89 (273)
T 1dih_A 82 PEGTLNHL 89 (273)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 33444444
|
| >1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=5.5e-05 Score=66.59 Aligned_cols=82 Identities=21% Similarity=0.245 Sum_probs=58.9
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcE-EEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKM-AVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V-~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
-.|||+++|+|+||..+++. . ++++ .+|+ ++..++ |+..+++++++++++|+|+.|-+. .++++....
T Consensus 11 ~~~rV~i~G~GaIG~~v~~~--~-~leLv~v~~---~k~gel---gv~a~~d~d~lla~pD~VVe~A~~-~av~e~~~~- 79 (253)
T 1j5p_A 11 HHMTVLIIGMGNIGKKLVEL--G-NFEKIYAYD---RISKDI---PGVVRLDEFQVPSDVSTVVECASP-EAVKEYSLQ- 79 (253)
T ss_dssp CCCEEEEECCSHHHHHHHHH--S-CCSEEEEEC---SSCCCC---SSSEECSSCCCCTTCCEEEECSCH-HHHHHHHHH-
T ss_pred ccceEEEECcCHHHHHHHhc--C-CcEEEEEEe---cccccc---CceeeCCHHHHhhCCCEEEECCCH-HHHHHHHHH-
Confidence 45999999999999999998 4 7885 5667 443333 666778888888899999999864 577764433
Q ss_pred CccccCCCCCCCeEEEEcCCC
Q 018506 123 NGLLQGGNSVRPQLLIDSSTI 143 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~ 143 (355)
+|+ .|+-++.+|.+
T Consensus 80 --iL~-----aG~dvv~~S~g 93 (253)
T 1j5p_A 80 --ILK-----NPVNYIIISTS 93 (253)
T ss_dssp --HTT-----SSSEEEECCGG
T ss_pred --HHH-----CCCCEEEcChh
Confidence 554 33455555554
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.55 E-value=9.4e-05 Score=66.27 Aligned_cols=65 Identities=14% Similarity=0.166 Sum_probs=52.0
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCC----CCHHHHhhcCCEEEEeCC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK----ETPFEVAEASDVVITMLP 110 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~----~s~~e~~~~aDiVi~~v~ 110 (355)
+||||.|.|+|.+|+.++..|.++||+|++.+|++++.+.+...++... .+++ +.++|+||-+..
T Consensus 4 m~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~--~~~~d~vi~~a~ 72 (286)
T 3ius_A 4 MTGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPS--LDGVTHLLISTA 72 (286)
T ss_dssp -CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEEEEESSSSCCC--CTTCCEEEECCC
T ss_pred CcCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCeEEEecccccc--cCCCCEEEECCC
Confidence 3589999999999999999999999999999999998877766543211 1222 678999998874
|
| >3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.53 E-value=8e-05 Score=68.85 Aligned_cols=104 Identities=10% Similarity=0.041 Sum_probs=67.4
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEE-EEeCCh-hHHHHHHh----CC--CCCCCCHHHHhh--cCCEEEEeCCCchH
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMA-VHDVNC-NVMKMFSD----MG--VPTKETPFEVAE--ASDVVITMLPSSSH 114 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~-v~dr~~-~~~~~l~~----~g--~~~~~s~~e~~~--~aDiVi~~v~~~~~ 114 (355)
++||||||+|.+|...+..| ..+.+|+ ++|+++ ++.+.+.+ .+ ....+|.+++++ +.|+|++|+|+...
T Consensus 2 ~~rvgiiG~G~~~~~~~~~l-~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~~H 80 (337)
T 3ip3_A 2 SLKICVIGSSGHFRYALEGL-DEECSITGIAPGVPEEDLSKLEKAISEMNIKPKKYNNWWEMLEKEKPDILVINTVFSLN 80 (337)
T ss_dssp CEEEEEECSSSCHHHHHTTC-CTTEEEEEEECSSTTCCCHHHHHHHHTTTCCCEECSSHHHHHHHHCCSEEEECSSHHHH
T ss_pred ceEEEEEccchhHHHHHHhc-CCCcEEEEEecCCchhhHHHHHHHHHHcCCCCcccCCHHHHhcCCCCCEEEEeCCcchH
Confidence 57999999999999888877 5567754 789887 34333322 24 356789999986 48999999998765
Q ss_pred HHHHhcCCCccccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhh
Q 018506 115 VLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSN 157 (355)
Q Consensus 115 ~~~vl~~~~~~l~~~~~~~~~ivi~~-st~~~~~~~~l~~~~~~ 157 (355)
.+-+.. .++. +..++++- -+....+.+++.+...+
T Consensus 81 ~~~~~~----al~a----GkhVl~EKPla~~~~ea~~l~~~a~~ 116 (337)
T 3ip3_A 81 GKILLE----ALER----KIHAFVEKPIATTFEDLEKIRSVYQK 116 (337)
T ss_dssp HHHHHH----HHHT----TCEEEECSSSCSSHHHHHHHHHHHHH
T ss_pred HHHHHH----HHHC----CCcEEEeCCCCCCHHHHHHHHHHHHH
Confidence 544433 2321 11244432 23346666777666543
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00014 Score=62.68 Aligned_cols=42 Identities=7% Similarity=0.171 Sum_probs=36.1
Q ss_pred CCce-EEEEc-ccHHhHHHHHHHH-HCCCcEEEEeCChh-HHHHHH
Q 018506 44 QFES-VGFIG-LGNMGFRMASNLM-KAGYKMAVHDVNCN-VMKMFS 85 (355)
Q Consensus 44 ~~mk-IgiIG-~G~mG~~ia~~L~-~~G~~V~v~dr~~~-~~~~l~ 85 (355)
.||| |.|.| .|.+|..+++.|+ +.|++|++.+|+++ +++.+.
T Consensus 3 ~mmk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~ 48 (221)
T 3r6d_A 3 AMYXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEI 48 (221)
T ss_dssp CSCSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHH
T ss_pred ceEEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhc
Confidence 3466 99998 6999999999999 89999999999988 766653
|
| >2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00032 Score=64.74 Aligned_cols=73 Identities=18% Similarity=0.292 Sum_probs=54.9
Q ss_pred CceEEEEcccHHhHHHHHHHHHCC-CcE-EEEeCChhHHHHHHh-CC------------------CCCCCCHHHHhhcCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAG-YKM-AVHDVNCNVMKMFSD-MG------------------VPTKETPFEVAEASD 103 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G-~~V-~v~dr~~~~~~~l~~-~g------------------~~~~~s~~e~~~~aD 103 (355)
|+||||+|+|.||..+++.|.+.. .++ .++|++++++..+.+ .| +....+.++++.+.|
T Consensus 2 ~irVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~vD 81 (334)
T 2czc_A 2 KVKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVD 81 (334)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCS
T ss_pred CcEEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhccCCC
Confidence 469999999999999999998753 454 566888777765543 32 244567888888999
Q ss_pred EEEEeCCCchHHHH
Q 018506 104 VVITMLPSSSHVLD 117 (355)
Q Consensus 104 iVi~~v~~~~~~~~ 117 (355)
+|++|+|.....+.
T Consensus 82 vV~~aTp~~~h~~~ 95 (334)
T 2czc_A 82 IIVDATPGGIGAKN 95 (334)
T ss_dssp EEEECCSTTHHHHH
T ss_pred EEEECCCccccHHH
Confidence 99999997654333
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=97.50 E-value=5.6e-05 Score=68.01 Aligned_cols=67 Identities=15% Similarity=0.041 Sum_probs=52.3
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHhCC-CCCCCCHHHHhhcCCEEEEeCCCc
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMG-VPTKETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~~g-~~~~~s~~e~~~~aDiVi~~v~~~ 112 (355)
...++.|+|+|.+|.+++..|.+.|. +|++++|++++++.+.+.- .....++.+ + ++|+||.++|..
T Consensus 121 ~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~~~~~~~~~~l~~-l-~~DivInaTp~G 189 (282)
T 3fbt_A 121 KNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEFKVISYDELSN-L-KGDVIINCTPKG 189 (282)
T ss_dssp TTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCTTSEEEEHHHHTT-C-CCSEEEECSSTT
T ss_pred cCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhcCcccHHHHHh-c-cCCEEEECCccC
Confidence 45789999999999999999999998 8999999999998887531 111112223 3 799999999753
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00014 Score=69.10 Aligned_cols=68 Identities=12% Similarity=0.151 Sum_probs=52.3
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCC---cEEEEeCChhHHHHHHhC-------CCC-----C--CCCHHHHhhc--CCEE
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGY---KMAVHDVNCNVMKMFSDM-------GVP-----T--KETPFEVAEA--SDVV 105 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~---~V~v~dr~~~~~~~l~~~-------g~~-----~--~~s~~e~~~~--aDiV 105 (355)
|+||.|+|+|.+|..++..|++.|. +|++++|++++++.+.+. .+. . ..+..+++++ +|+|
T Consensus 1 M~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~DvV 80 (405)
T 4ina_A 1 MAKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQIV 80 (405)
T ss_dssp -CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCEE
Confidence 4799999999999999999999983 899999999998776541 121 1 1234556666 8999
Q ss_pred EEeCCCc
Q 018506 106 ITMLPSS 112 (355)
Q Consensus 106 i~~v~~~ 112 (355)
|.+.+..
T Consensus 81 in~ag~~ 87 (405)
T 4ina_A 81 LNIALPY 87 (405)
T ss_dssp EECSCGG
T ss_pred EECCCcc
Confidence 9998754
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00018 Score=64.79 Aligned_cols=76 Identities=17% Similarity=0.221 Sum_probs=58.8
Q ss_pred CCceEEEEcccH-HhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHH--HHhhcCCEEEEeCCCchHHHHHhc
Q 018506 44 QFESVGFIGLGN-MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPF--EVAEASDVVITMLPSSSHVLDVYN 120 (355)
Q Consensus 44 ~~mkIgiIG~G~-mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~--e~~~~aDiVi~~v~~~~~~~~vl~ 120 (355)
.-.++.|||.|. +|.+++..|.+.|.+|++++|... +++ +.++++|+||.+++.+.. +.
T Consensus 164 ~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~--------------~l~l~~~~~~ADIVI~Avg~p~~----I~ 225 (300)
T 4a26_A 164 AGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTS--------------TEDMIDYLRTADIVIAAMGQPGY----VK 225 (300)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSC--------------HHHHHHHHHTCSEEEECSCCTTC----BC
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCC--------------CchhhhhhccCCEEEECCCCCCC----Cc
Confidence 457899999887 799999999999999999997432 344 888999999999997632 22
Q ss_pred CCCccccCCCCCCCeEEEEcCCCC
Q 018506 121 GPNGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 121 ~~~~~l~~~~~~~~~ivi~~st~~ 144 (355)
..+++ ++.+|||.+...
T Consensus 226 --~~~vk-----~GavVIDvgi~~ 242 (300)
T 4a26_A 226 --GEWIK-----EGAAVVDVGTTP 242 (300)
T ss_dssp --GGGSC-----TTCEEEECCCEE
T ss_pred --HHhcC-----CCcEEEEEeccC
Confidence 12443 567999997653
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00029 Score=60.56 Aligned_cols=66 Identities=12% Similarity=0.087 Sum_probs=50.8
Q ss_pred ceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCC-----CCCCHHHHhhcCCEEEEeCCC
Q 018506 46 ESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-----TKETPFEVAEASDVVITMLPS 111 (355)
Q Consensus 46 mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~-----~~~s~~e~~~~aDiVi~~v~~ 111 (355)
|||.|.|+ |.+|+.+++.|++.|++|++.+|++++.+.+...++. ..+...+++..+|+||.+...
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~ 72 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTEADLDSVDAVVDALSV 72 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTCTTSEEEECCGGGCCHHHHTTCSEEEECCCC
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccCCCceEEecccccccHhhcccCCEEEECCcc
Confidence 78999987 9999999999999999999999999988776544332 111112566788888887643
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00018 Score=64.93 Aligned_cols=103 Identities=19% Similarity=0.188 Sum_probs=68.3
Q ss_pred CCceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhh--cCCEEEEeCCCchHHHHHhc
Q 018506 44 QFESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAE--ASDVVITMLPSSSHVLDVYN 120 (355)
Q Consensus 44 ~~mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~--~aDiVi~~v~~~~~~~~vl~ 120 (355)
+.+||+|+|+ |+||..+++.+.+.|++ .++..+|.+... .-.|..+..+++|+.+ .+|++++++|.. .+.+++.
T Consensus 6 ~~~~VaVvGasG~~G~~~~~~l~~~g~~-~v~~VnP~~~g~-~i~G~~vy~sl~el~~~~~~Dv~Ii~vp~~-~~~~~~~ 82 (288)
T 1oi7_A 6 RETRVLVQGITGREGQFHTKQMLTYGTK-IVAGVTPGKGGM-EVLGVPVYDTVKEAVAHHEVDASIIFVPAP-AAADAAL 82 (288)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTTC-EETTEEEESSHHHHHHHSCCSEEEECCCHH-HHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHcCCe-EEEEECCCCCCc-eECCEEeeCCHHHHhhcCCCCEEEEecCHH-HHHHHHH
Confidence 4578999998 99999999999999998 334444443100 1256778889999988 899999999965 5555554
Q ss_pred CCCccccCCCCCCCeEEEEcCCCCHH-HHHHHHHHHh
Q 018506 121 GPNGLLQGGNSVRPQLLIDSSTIDPQ-TSRNISAAVS 156 (355)
Q Consensus 121 ~~~~~l~~~~~~~~~ivi~~st~~~~-~~~~l~~~~~ 156 (355)
.. .+. +-+.++..+++.+. ..+++.+...
T Consensus 83 ea---~~~----Gi~~vVi~t~G~~~~~~~~l~~~a~ 112 (288)
T 1oi7_A 83 EA---AHA----GIPLIVLITEGIPTLDMVRAVEEIK 112 (288)
T ss_dssp HH---HHT----TCSEEEECCSCCCHHHHHHHHHHHH
T ss_pred HH---HHC----CCCEEEEECCCCCHHHHHHHHHHHH
Confidence 32 221 11234445555443 3445555544
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=97.47 E-value=8.9e-05 Score=64.75 Aligned_cols=68 Identities=15% Similarity=0.102 Sum_probs=53.1
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCC----CCCHH---HH-hhcCCEEEEeCCCch
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT----KETPF---EV-AEASDVVITMLPSSS 113 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~----~~s~~---e~-~~~aDiVi~~v~~~~ 113 (355)
..++|.|+|+|.+|..+++.|.+.|+ |+++++++++++.+. .++.. .++.+ ++ ++++|.||++++++.
T Consensus 8 ~~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~ 83 (234)
T 2aef_A 8 KSRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLR-SGANFVHGDPTRVSDLEKANVRGARAVIVDLESDS 83 (234)
T ss_dssp --CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH-TTCEEEESCTTCHHHHHHTTCTTCSEEEECCSCHH
T ss_pred CCCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh-cCCeEEEcCCCCHHHHHhcCcchhcEEEEcCCCcH
Confidence 34789999999999999999999999 999999999988776 55332 12222 23 568999999998763
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00038 Score=62.19 Aligned_cols=76 Identities=20% Similarity=0.217 Sum_probs=59.9
Q ss_pred CCCceEEEEcccH-HhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcC
Q 018506 43 CQFESVGFIGLGN-MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 121 (355)
Q Consensus 43 ~~~mkIgiIG~G~-mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~ 121 (355)
..-.++.|||.|. +|.++|..|...|.+|+++++.. .++.+.++++|+||.+++.+. ++..
T Consensus 157 l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t--------------~~L~~~~~~ADIVI~Avg~p~----lI~~ 218 (288)
T 1b0a_A 157 TFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT--------------KNLRHHVENADLLIVAVGKPG----FIPG 218 (288)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC--------------SCHHHHHHHCSEEEECSCCTT----CBCT
T ss_pred CCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHhccCCEEEECCCCcC----cCCH
Confidence 3457899999997 69999999999999999998543 578888999999999999763 2221
Q ss_pred CCccccCCCCCCCeEEEEcCCC
Q 018506 122 PNGLLQGGNSVRPQLLIDSSTI 143 (355)
Q Consensus 122 ~~~~l~~~~~~~~~ivi~~st~ 143 (355)
.+++ ++.+|||.+..
T Consensus 219 --~~vk-----~GavVIDVgi~ 233 (288)
T 1b0a_A 219 --DWIK-----EGAIVIDVGIN 233 (288)
T ss_dssp --TTSC-----TTCEEEECCCE
T ss_pred --HHcC-----CCcEEEEccCC
Confidence 2443 56799998764
|
| >1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0003 Score=64.96 Aligned_cols=70 Identities=20% Similarity=0.327 Sum_probs=49.8
Q ss_pred CceEEEEcccHHhHHHHHHHHHC-CCcE-EEEeCChhHHHHHHh-------------------CCCCCCCCHHHHhhcCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKA-GYKM-AVHDVNCNVMKMFSD-------------------MGVPTKETPFEVAEASD 103 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~-G~~V-~v~dr~~~~~~~l~~-------------------~g~~~~~s~~e~~~~aD 103 (355)
|+||||+|+|.||..+++.|.+. +.++ .+.+++++....+.. .++.+..+..++..++|
T Consensus 1 mikVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~~vD 80 (337)
T 1cf2_P 1 MKAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEAD 80 (337)
T ss_dssp CEEEEEECCSTTHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCS
T ss_pred CeEEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhcCCC
Confidence 47999999999999999999874 4565 345777554433222 23333346677778999
Q ss_pred EEEEeCCCchH
Q 018506 104 VVITMLPSSSH 114 (355)
Q Consensus 104 iVi~~v~~~~~ 114 (355)
+||.|+|....
T Consensus 81 vV~~atp~~~~ 91 (337)
T 1cf2_P 81 IVIDCTPEGIG 91 (337)
T ss_dssp EEEECCSTTHH
T ss_pred EEEECCCchhh
Confidence 99999997643
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00034 Score=65.25 Aligned_cols=91 Identities=13% Similarity=0.088 Sum_probs=55.8
Q ss_pred CCCceEEEEc-ccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHh-----CCC---C-CCCCHHHHhhcCCEEEEeCCC
Q 018506 43 CQFESVGFIG-LGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSD-----MGV---P-TKETPFEVAEASDVVITMLPS 111 (355)
Q Consensus 43 ~~~mkIgiIG-~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~-----~g~---~-~~~s~~e~~~~aDiVi~~v~~ 111 (355)
|+++||+|+| .|.+|..+.+.|.+..+ ++...+...+.-.++.+ .+. . ...+ ++..+++|+||+|+|.
T Consensus 14 M~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~~~-~~~~~~vDvVf~atp~ 92 (359)
T 1xyg_A 14 EKDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVSVK-DADFSTVDAVFCCLPH 92 (359)
T ss_dssp -CCEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBCGG-GCCGGGCSEEEECCCT
T ss_pred ccCcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHHhCchhcCcccccceecc-hhHhcCCCEEEEcCCc
Confidence 4557999999 89999999999998754 66655433222111111 111 1 1112 4445689999999997
Q ss_pred chHHHHHhcCCCccccCCCCCCCeEEEEcCCCC
Q 018506 112 SSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 112 ~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~ 144 (355)
....+. ... + + .|..+||.|+..
T Consensus 93 ~~s~~~-a~~---~-~-----aG~~VId~sa~~ 115 (359)
T 1xyg_A 93 GTTQEI-IKE---L-P-----TALKIVDLSADF 115 (359)
T ss_dssp TTHHHH-HHT---S-C-----TTCEEEECSSTT
T ss_pred hhHHHH-HHH---H-h-----CCCEEEECCccc
Confidence 644433 222 2 2 356899998865
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00039 Score=59.44 Aligned_cols=65 Identities=15% Similarity=0.210 Sum_probs=50.6
Q ss_pred ceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCC-----CCCCHHHHhhcCCEEEEeCCC
Q 018506 46 ESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-----TKETPFEVAEASDVVITMLPS 111 (355)
Q Consensus 46 mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~-----~~~s~~e~~~~aDiVi~~v~~ 111 (355)
|||.|.| .|.+|+.+++.|+++|++|++.+|++++.+.+. .++. ..+...+++..+|+||.+...
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~-~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~ 71 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH-KDINILQKDIFDLTLSDLSDQNVVVDAYGI 71 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC-SSSEEEECCGGGCCHHHHTTCSEEEECCCS
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc-CCCeEEeccccChhhhhhcCCCEEEECCcC
Confidence 7899998 599999999999999999999999998887664 2221 122112667789999988744
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00037 Score=63.41 Aligned_cols=65 Identities=17% Similarity=0.217 Sum_probs=48.4
Q ss_pred ceEEEEc-ccHHhHHHHHHHHHCCC--cEEEEeC--ChhHHHH----HHhC-----CCCCCCCHHHHhhcCCEEEEeCC
Q 018506 46 ESVGFIG-LGNMGFRMASNLMKAGY--KMAVHDV--NCNVMKM----FSDM-----GVPTKETPFEVAEASDVVITMLP 110 (355)
Q Consensus 46 mkIgiIG-~G~mG~~ia~~L~~~G~--~V~v~dr--~~~~~~~----l~~~-----g~~~~~s~~e~~~~aDiVi~~v~ 110 (355)
|||+|+| +|.+|.+++..|+..|+ ++.++|+ ++++++. +.+. ...+..+..++++++|+||++..
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVi~~ag 79 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVITAG 79 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTTCSEEEECCC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEeCCHHHhCCCCEEEEcCC
Confidence 7999999 99999999999998886 6899999 8766532 2221 11222133677899999999964
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00047 Score=62.02 Aligned_cols=77 Identities=10% Similarity=0.088 Sum_probs=61.4
Q ss_pred CCCceEEEEcccH-HhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcC
Q 018506 43 CQFESVGFIGLGN-MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 121 (355)
Q Consensus 43 ~~~mkIgiIG~G~-mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~ 121 (355)
..-.++.|||.|+ +|.++|..|...|.+|++++++ +.++.+.++++|+||.+++.+.. +.
T Consensus 163 l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~--------------t~~L~~~~~~ADIVI~Avg~p~~----I~- 223 (301)
T 1a4i_A 163 IAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK--------------TAHLDEEVNKGDILVVATGQPEM----VK- 223 (301)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT--------------CSSHHHHHTTCSEEEECCCCTTC----BC-
T ss_pred CCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECC--------------cccHHHHhccCCEEEECCCCccc----CC-
Confidence 3457899999996 7999999999999999999854 35788899999999999988632 21
Q ss_pred CCccccCCCCCCCeEEEEcCCCC
Q 018506 122 PNGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 122 ~~~~l~~~~~~~~~ivi~~st~~ 144 (355)
..+++ ++.+|||.+...
T Consensus 224 -~~~vk-----~GavVIDVgi~~ 240 (301)
T 1a4i_A 224 -GEWIK-----PGAIVIDCGINY 240 (301)
T ss_dssp -GGGSC-----TTCEEEECCCBC
T ss_pred -HHHcC-----CCcEEEEccCCC
Confidence 12443 567999998865
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0005 Score=61.41 Aligned_cols=76 Identities=12% Similarity=0.144 Sum_probs=59.5
Q ss_pred CCceEEEEcccH-HhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 44 QFESVGFIGLGN-MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~G~-mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
.-.++.|||.|. +|.+++..|...|.+|++++++ +.++.+.++++|+||.+++.+.. +.
T Consensus 160 ~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~--------------t~~L~~~~~~ADIVI~Avg~p~~----I~-- 219 (285)
T 3l07_A 160 EGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRF--------------TTDLKSHTTKADILIVAVGKPNF----IT-- 219 (285)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT--------------CSSHHHHHTTCSEEEECCCCTTC----BC--
T ss_pred CCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC--------------chhHHHhcccCCEEEECCCCCCC----CC--
Confidence 457899999987 7999999999999999999864 34788899999999999987632 21
Q ss_pred CccccCCCCCCCeEEEEcCCCC
Q 018506 123 NGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~ 144 (355)
..+++ ++.+|||.+...
T Consensus 220 ~~~vk-----~GavVIDvgi~~ 236 (285)
T 3l07_A 220 ADMVK-----EGAVVIDVGINH 236 (285)
T ss_dssp GGGSC-----TTCEEEECCCEE
T ss_pred HHHcC-----CCcEEEEecccC
Confidence 12443 567899987653
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00077 Score=62.78 Aligned_cols=95 Identities=14% Similarity=0.121 Sum_probs=67.7
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCC----hhHH--------HHHHhC-C-CCCCCCHHHHhhcCCEEEE
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVN----CNVM--------KMFSDM-G-VPTKETPFEVAEASDVVIT 107 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~----~~~~--------~~l~~~-g-~~~~~s~~e~~~~aDiVi~ 107 (355)
....||.|+|+|.+|..+++.|...|. +|+++||+ .++. +.+.+. + .....++.|+++.+|++|-
T Consensus 190 l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~~~~~~L~eav~~ADVlIG 269 (388)
T 1vl6_A 190 IEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADFFIG 269 (388)
T ss_dssp TTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSEEEE
T ss_pred CCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhccCchhhHHHHHccCCEEEE
Confidence 456899999999999999999999998 79999998 5542 233332 1 2235689999999999988
Q ss_pred eCCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHH
Q 018506 108 MLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ 146 (355)
Q Consensus 108 ~v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~ 146 (355)
+.....-.++.+..+ . ++.+|+++|+-.|+
T Consensus 270 ~Sap~l~t~emVk~M-------a--~~pIIfalSNPt~E 299 (388)
T 1vl6_A 270 VSRGNILKPEWIKKM-------S--RKPVIFALANPVPE 299 (388)
T ss_dssp CSCSSCSCHHHHTTS-------C--SSCEEEECCSSSCS
T ss_pred eCCCCccCHHHHHhc-------C--CCCEEEEcCCCCCC
Confidence 764232333444332 1 33499999986654
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00044 Score=61.55 Aligned_cols=76 Identities=13% Similarity=0.152 Sum_probs=59.7
Q ss_pred CCCceEEEEcccHH-hHHHHHHHHHC--CCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHh
Q 018506 43 CQFESVGFIGLGNM-GFRMASNLMKA--GYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVY 119 (355)
Q Consensus 43 ~~~mkIgiIG~G~m-G~~ia~~L~~~--G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl 119 (355)
....++.|||.|.+ |.+++..|... |.+|++++++. .++.+.++++|+||.+++.+.. +
T Consensus 156 l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t--------------~~L~~~~~~ADIVI~Avg~p~~----I 217 (281)
T 2c2x_A 156 IAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGT--------------RDLPALTRQADIVVAAVGVAHL----L 217 (281)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTC--------------SCHHHHHTTCSEEEECSCCTTC----B
T ss_pred CCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECch--------------hHHHHHHhhCCEEEECCCCCcc----c
Confidence 35578999999985 99999999999 88999998653 5788889999999999987632 2
Q ss_pred cCCCccccCCCCCCCeEEEEcCCC
Q 018506 120 NGPNGLLQGGNSVRPQLLIDSSTI 143 (355)
Q Consensus 120 ~~~~~~l~~~~~~~~~ivi~~st~ 143 (355)
. ..+++ ++.+|||.+..
T Consensus 218 ~--~~~vk-----~GavVIDVgi~ 234 (281)
T 2c2x_A 218 T--ADMVR-----PGAAVIDVGVS 234 (281)
T ss_dssp C--GGGSC-----TTCEEEECCEE
T ss_pred C--HHHcC-----CCcEEEEccCC
Confidence 1 12443 46799998764
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00027 Score=64.54 Aligned_cols=69 Identities=7% Similarity=0.009 Sum_probs=53.5
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCC---hhHHHHHHhC-----CC--CC--CCC---HHHHhhcCCEEEE
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVN---CNVMKMFSDM-----GV--PT--KET---PFEVAEASDVVIT 107 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~---~~~~~~l~~~-----g~--~~--~~s---~~e~~~~aDiVi~ 107 (355)
...++.|+|+|.+|.+++..|++.|. +|++++|+ .++++++.+. +. .. .++ +.+.+.++|+||-
T Consensus 153 ~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aDiIIN 232 (315)
T 3tnl_A 153 IGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIFTN 232 (315)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEEEE
T ss_pred cCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCCEEEE
Confidence 45789999999999999999999998 89999999 8888776541 21 11 122 3456779999999
Q ss_pred eCCCc
Q 018506 108 MLPSS 112 (355)
Q Consensus 108 ~v~~~ 112 (355)
++|..
T Consensus 233 aTp~G 237 (315)
T 3tnl_A 233 ATGVG 237 (315)
T ss_dssp CSSTT
T ss_pred CccCC
Confidence 99853
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00064 Score=60.70 Aligned_cols=77 Identities=17% Similarity=0.248 Sum_probs=60.3
Q ss_pred CCCceEEEEcccH-HhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcC
Q 018506 43 CQFESVGFIGLGN-MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 121 (355)
Q Consensus 43 ~~~mkIgiIG~G~-mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~ 121 (355)
..-.++.|||.|. +|.++|..|...|.+|++++++ +.++.+.++.+|+||.+++.+.. +.
T Consensus 158 l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~--------------t~~L~~~~~~ADIVI~Avg~p~~----I~- 218 (285)
T 3p2o_A 158 LEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIK--------------TKDLSLYTRQADLIIVAAGCVNL----LR- 218 (285)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT--------------CSCHHHHHTTCSEEEECSSCTTC----BC-
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC--------------chhHHHHhhcCCEEEECCCCCCc----CC-
Confidence 3457899999987 6999999999999999999874 24788899999999999987532 21
Q ss_pred CCccccCCCCCCCeEEEEcCCCC
Q 018506 122 PNGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 122 ~~~~l~~~~~~~~~ivi~~st~~ 144 (355)
..+++ ++.+|||.+...
T Consensus 219 -~~~vk-----~GavVIDVgi~~ 235 (285)
T 3p2o_A 219 -SDMVK-----EGVIVVDVGINR 235 (285)
T ss_dssp -GGGSC-----TTEEEEECCCEE
T ss_pred -HHHcC-----CCeEEEEeccCc
Confidence 12443 568999987653
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00038 Score=61.52 Aligned_cols=34 Identities=26% Similarity=0.445 Sum_probs=31.6
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCCh
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNC 78 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~ 78 (355)
..+|.|||+|.+|+.++..|+..|. +++++|++.
T Consensus 31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~ 65 (249)
T 1jw9_B 31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT 65 (249)
T ss_dssp HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 3689999999999999999999997 799999987
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00062 Score=62.69 Aligned_cols=67 Identities=10% Similarity=0.237 Sum_probs=51.4
Q ss_pred CCceEEEEcc-cHHhHHHHHHHHHCCC-------cEEEEeCC----hhHHHH----HHhCC------CCCCCCHHHHhhc
Q 018506 44 QFESVGFIGL-GNMGFRMASNLMKAGY-------KMAVHDVN----CNVMKM----FSDMG------VPTKETPFEVAEA 101 (355)
Q Consensus 44 ~~mkIgiIG~-G~mG~~ia~~L~~~G~-------~V~v~dr~----~~~~~~----l~~~g------~~~~~s~~e~~~~ 101 (355)
+.|||+|+|+ |.+|++++..|...|+ +|.++|++ +++++. +.+.. +...++..+++++
T Consensus 4 ~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~al~~ 83 (329)
T 1b8p_A 4 TPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTAFKD 83 (329)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHHTTT
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHHHhCC
Confidence 3589999997 9999999999999885 89999998 554432 33311 1223677889999
Q ss_pred CCEEEEeCC
Q 018506 102 SDVVITMLP 110 (355)
Q Consensus 102 aDiVi~~v~ 110 (355)
+|+||++..
T Consensus 84 aD~Vi~~ag 92 (329)
T 1b8p_A 84 ADVALLVGA 92 (329)
T ss_dssp CSEEEECCC
T ss_pred CCEEEEeCC
Confidence 999999864
|
| >3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00039 Score=63.83 Aligned_cols=70 Identities=19% Similarity=0.240 Sum_probs=45.2
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHC-------CCcE-EEEeCChhH---------HH-HHHhCC-CCC-CCCHHHHhh--
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKA-------GYKM-AVHDVNCNV---------MK-MFSDMG-VPT-KETPFEVAE-- 100 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~-------G~~V-~v~dr~~~~---------~~-~l~~~g-~~~-~~s~~e~~~-- 100 (355)
|+++||+|||+|.||+.+++.|.+. +.+| .++|++++. .. ...+.+ +.. ..+..+++.
T Consensus 2 Mk~irVgIiG~G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~~~~~~idl~~~~~~~~~~g~~~~~~~d~~e~l~~~ 81 (325)
T 3ing_A 2 MKEIRIILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRNLDISSIISNKEKTGRISDRAFSGPEDLMGE 81 (325)
T ss_dssp -CEEEEEEECCSHHHHHHHHHHHHHHHHC--CEEEEEEEECSSBEEECSSCCHHHHHHHHHHHSCSCSSBCCSGGGGTTS
T ss_pred CceEEEEEEcCcHHHHHHHHHHHhchhhccCCCEEEEEEEecChhhcccccCHHHHHHHhhhcCCCCcccCCHHHHhcCC
Confidence 4568999999999999999999874 2343 456777542 11 122223 211 115566664
Q ss_pred cCCEEEEeCCCc
Q 018506 101 ASDVVITMLPSS 112 (355)
Q Consensus 101 ~aDiVi~~v~~~ 112 (355)
+.|+|+.|+|..
T Consensus 82 ~iDvVVe~T~~~ 93 (325)
T 3ing_A 82 AADLLVDCTPAS 93 (325)
T ss_dssp CCSEEEECCCCC
T ss_pred CCCEEEECCCCc
Confidence 589999999864
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00028 Score=59.63 Aligned_cols=37 Identities=19% Similarity=0.447 Sum_probs=33.9
Q ss_pred ceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHH
Q 018506 46 ESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMK 82 (355)
Q Consensus 46 mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~ 82 (355)
|+|.|.|+ |.+|..+++.|.+.|++|++.+|++++.+
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~ 41 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLP 41 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSC
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcc
Confidence 78999987 99999999999999999999999987643
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00046 Score=62.92 Aligned_cols=69 Identities=9% Similarity=0.145 Sum_probs=53.6
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCC---hhHHHHHHh-----CCCC--C--CCCH---HHHhhcCCEEEE
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVN---CNVMKMFSD-----MGVP--T--KETP---FEVAEASDVVIT 107 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~---~~~~~~l~~-----~g~~--~--~~s~---~e~~~~aDiVi~ 107 (355)
...++.|+|+|.+|.+++..|.+.|. +|++++|+ .++++++.+ .+.. . ..+. .+.+.++|+||-
T Consensus 147 ~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~DiIIN 226 (312)
T 3t4e_A 147 RGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASADILTN 226 (312)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHHCSEEEE
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccCceEEEE
Confidence 44689999999999999999999998 79999999 777777654 1211 1 1233 456778999999
Q ss_pred eCCCc
Q 018506 108 MLPSS 112 (355)
Q Consensus 108 ~v~~~ 112 (355)
++|..
T Consensus 227 aTp~G 231 (312)
T 3t4e_A 227 GTKVG 231 (312)
T ss_dssp CSSTT
T ss_pred CCcCC
Confidence 99864
|
| >2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00034 Score=63.32 Aligned_cols=103 Identities=16% Similarity=0.211 Sum_probs=69.3
Q ss_pred CCceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHH-HHHHhCCCCCCCCHHHHhh--cCCEEEEeCCCchHHHHHh
Q 018506 44 QFESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVM-KMFSDMGVPTKETPFEVAE--ASDVVITMLPSSSHVLDVY 119 (355)
Q Consensus 44 ~~mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~-~~l~~~g~~~~~s~~e~~~--~aDiVi~~v~~~~~~~~vl 119 (355)
...+|.|+|+ |.||..+++.+.+.|++ .++..+|.+. +.+ .|.....+++|+.+ ..|++++++|.. .+.+++
T Consensus 12 ~~~~v~V~Gasg~~G~~~~~~l~~~g~~-~V~~VnP~~~g~~i--~G~~vy~sl~el~~~~~~Dv~ii~vp~~-~~~~~v 87 (294)
T 2yv1_A 12 ENTKAIVQGITGRQGSFHTKKMLECGTK-IVGGVTPGKGGQNV--HGVPVFDTVKEAVKETDANASVIFVPAP-FAKDAV 87 (294)
T ss_dssp TTCCEEEETTTSHHHHHHHHHHHHTTCC-EEEEECTTCTTCEE--TTEEEESSHHHHHHHHCCCEEEECCCHH-HHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHHhCCCe-EEEEeCCCCCCceE--CCEeeeCCHHHHhhcCCCCEEEEccCHH-HHHHHH
Confidence 3467899998 99999999999999998 5566666542 111 46778889999988 899999999965 555555
Q ss_pred cCCCccccCCCCCCCeEEEEcCCCCH-HHHHHHHHHHhh
Q 018506 120 NGPNGLLQGGNSVRPQLLIDSSTIDP-QTSRNISAAVSN 157 (355)
Q Consensus 120 ~~~~~~l~~~~~~~~~ivi~~st~~~-~~~~~l~~~~~~ 157 (355)
.. .++. +-+.+|..+++.+ ...+++.+...+
T Consensus 88 ~e---a~~~----Gi~~vVi~t~G~~~~~~~~l~~~A~~ 119 (294)
T 2yv1_A 88 FE---AIDA----GIELIVVITEHIPVHDTMEFVNYAED 119 (294)
T ss_dssp HH---HHHT----TCSEEEECCSCCCHHHHHHHHHHHHH
T ss_pred HH---HHHC----CCCEEEEECCCCCHHHHHHHHHHHHH
Confidence 43 2221 1133444555544 344556555543
|
| >3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00073 Score=64.54 Aligned_cols=67 Identities=22% Similarity=0.426 Sum_probs=52.7
Q ss_pred CCceEEEEcccHHhHHHHHHHHH----------CCCc-EEEEeCChhHHHHHHhCCCCCCCCHHHHhh--cCCEEEEeCC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMK----------AGYK-MAVHDVNCNVMKMFSDMGVPTKETPFEVAE--ASDVVITMLP 110 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~----------~G~~-V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~--~aDiVi~~v~ 110 (355)
+.+||||||+|.||+.++..|.+ .+.+ +.++||++++.+.+. .+...+++.+++++ +.|+|++|+|
T Consensus 9 k~irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~~-~~~~~~~d~~ell~d~diDvVve~tp 87 (444)
T 3mtj_A 9 KPIHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEALA-GGLPLTTNPFDVVDDPEIDIVVELIG 87 (444)
T ss_dssp SCEEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHHH-TTCCEESCTHHHHTCTTCCEEEECCC
T ss_pred CcccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhhc-ccCcccCCHHHHhcCCCCCEEEEcCC
Confidence 45789999999999999988764 2344 457799998877663 34667788999886 5799999998
Q ss_pred C
Q 018506 111 S 111 (355)
Q Consensus 111 ~ 111 (355)
.
T Consensus 88 ~ 88 (444)
T 3mtj_A 88 G 88 (444)
T ss_dssp S
T ss_pred C
Confidence 6
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00092 Score=59.66 Aligned_cols=76 Identities=16% Similarity=0.171 Sum_probs=59.7
Q ss_pred CCceEEEEcccH-HhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 44 QFESVGFIGLGN-MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~G~-mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
.-.++.|||.|. +|.++|..|...|.+|+++++.. .++.+.++++|+||.+++.+.. +.
T Consensus 160 ~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T--------------~~L~~~~~~ADIVI~Avg~p~~----I~-- 219 (286)
T 4a5o_A 160 YGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFT--------------RDLADHVSRADLVVVAAGKPGL----VK-- 219 (286)
T ss_dssp TTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTC--------------SCHHHHHHTCSEEEECCCCTTC----BC--
T ss_pred CCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCC--------------cCHHHHhccCCEEEECCCCCCC----CC--
Confidence 457899999876 89999999999999999998632 4678889999999999987632 21
Q ss_pred CccccCCCCCCCeEEEEcCCCC
Q 018506 123 NGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~ 144 (355)
..+++ ++.+|||.+...
T Consensus 220 ~~~vk-----~GavVIDvgi~~ 236 (286)
T 4a5o_A 220 GEWIK-----EGAIVIDVGINR 236 (286)
T ss_dssp GGGSC-----TTCEEEECCSCS
T ss_pred HHHcC-----CCeEEEEecccc
Confidence 12443 567999997664
|
| >2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0013 Score=59.58 Aligned_cols=103 Identities=17% Similarity=0.158 Sum_probs=68.1
Q ss_pred CCceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHH-HHHHhCCCCCCCCHHHHhh--c-CCEEEEeCCCchHHHHH
Q 018506 44 QFESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVM-KMFSDMGVPTKETPFEVAE--A-SDVVITMLPSSSHVLDV 118 (355)
Q Consensus 44 ~~mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~-~~l~~~g~~~~~s~~e~~~--~-aDiVi~~v~~~~~~~~v 118 (355)
...+|.|+|+ |.||..+++.+.+.|++ .++..+|.+. +. -.|.....|++|+.+ . .|++++++|.. .+.++
T Consensus 12 ~~~~vvV~Gasg~~G~~~~~~l~~~g~~-~v~~VnP~~~g~~--i~G~~vy~sl~el~~~~~~~DvaIi~vp~~-~~~~~ 87 (297)
T 2yv2_A 12 SETRVLVQGITGREGSFHAKAMLEYGTK-VVAGVTPGKGGSE--VHGVPVYDSVKEALAEHPEINTSIVFVPAP-FAPDA 87 (297)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTTCE--ETTEEEESSHHHHHHHCTTCCEEEECCCGG-GHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHHhCCCc-EEEEeCCCCCCce--ECCEeeeCCHHHHhhcCCCCCEEEEecCHH-HHHHH
Confidence 4567888898 99999999999999998 5555555532 11 147778889999887 5 99999999975 55555
Q ss_pred hcCCCccccCCCCCCCeEEEEcCCCCHH-HHHHHHHHHhh
Q 018506 119 YNGPNGLLQGGNSVRPQLLIDSSTIDPQ-TSRNISAAVSN 157 (355)
Q Consensus 119 l~~~~~~l~~~~~~~~~ivi~~st~~~~-~~~~l~~~~~~ 157 (355)
+.. .++. +-+.+|..+++.++ ..+++.+...+
T Consensus 88 v~e---a~~~----Gi~~vVi~t~G~~~~~~~~l~~~A~~ 120 (297)
T 2yv2_A 88 VYE---AVDA----GIRLVVVITEGIPVHDTMRFVNYARQ 120 (297)
T ss_dssp HHH---HHHT----TCSEEEECCCCCCHHHHHHHHHHHHH
T ss_pred HHH---HHHC----CCCEEEEECCCCCHHHHHHHHHHHHH
Confidence 443 2221 11334445555443 34556555543
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00052 Score=63.36 Aligned_cols=69 Identities=17% Similarity=0.161 Sum_probs=50.2
Q ss_pred CCCceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCCh----hHHH---HHHhCCCCC-------CCCHHHHhh--cCCEE
Q 018506 43 CQFESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNC----NVMK---MFSDMGVPT-------KETPFEVAE--ASDVV 105 (355)
Q Consensus 43 ~~~mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~----~~~~---~l~~~g~~~-------~~s~~e~~~--~aDiV 105 (355)
|.+|+|.|.|+ |.+|+.++..|.+.||+|++.+|++ ++.+ .+...++.. ..++.++++ .+|+|
T Consensus 8 M~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~V 87 (346)
T 3i6i_A 8 SPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDIV 87 (346)
T ss_dssp ---CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCCEE
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCCEE
Confidence 45689999987 9999999999999999999999976 4444 233344322 123455677 89999
Q ss_pred EEeCCC
Q 018506 106 ITMLPS 111 (355)
Q Consensus 106 i~~v~~ 111 (355)
|.+...
T Consensus 88 i~~a~~ 93 (346)
T 3i6i_A 88 VSTVGG 93 (346)
T ss_dssp EECCCG
T ss_pred EECCch
Confidence 998754
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00021 Score=64.05 Aligned_cols=67 Identities=13% Similarity=0.217 Sum_probs=46.6
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH---hCCCCCCCCHHHHhhc-CCEEEEeC
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS---DMGVPTKETPFEVAEA-SDVVITML 109 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~---~~g~~~~~s~~e~~~~-aDiVi~~v 109 (355)
|++|||.|.|+|.+|+.++..|.+.||+|++.+|++++...-. ...+.-..+..++++. +|+||-+.
T Consensus 1 M~~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a 71 (286)
T 3gpi_A 1 MSLSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQPMPAGVQTLIADVTRPDTLASIVHLRPEILVYCV 71 (286)
T ss_dssp -CCCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSCCCTTCCEEECCTTCGGGCTTGGGGCCSEEEECH
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCccccccCCceEEccCCChHHHHHhhcCCCCEEEEeC
Confidence 3568999999999999999999999999999999876521000 0011111233345555 99999775
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00053 Score=62.60 Aligned_cols=67 Identities=22% Similarity=0.261 Sum_probs=49.1
Q ss_pred ceEEEEc-ccHHhHHHHHHHHHC-C--CcEEEEeCCh---hHHHHHHhCCC--CCC----CCHHHHhhcCCEEEEeCCCc
Q 018506 46 ESVGFIG-LGNMGFRMASNLMKA-G--YKMAVHDVNC---NVMKMFSDMGV--PTK----ETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 46 mkIgiIG-~G~mG~~ia~~L~~~-G--~~V~v~dr~~---~~~~~l~~~g~--~~~----~s~~e~~~~aDiVi~~v~~~ 112 (355)
|||+||| +|.+|.+++..|... + .++.++|+++ ..+..+.+... ... ++..++++++|+||++...+
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~~~G~a~Dl~~~~~~~~v~~~~~~~~~~~~~~aDivii~ag~~ 80 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGVA 80 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTTHHHHHHHHHTSCSSEEEEEECSSCCHHHHTTCSEEEECCSCS
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCCchhHHHHhhCCCCCceEEEecCCCcHHHhCCCCEEEEeCCCC
Confidence 7999999 899999999999875 4 5799999986 22333443211 111 35678889999999997443
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0046 Score=54.23 Aligned_cols=58 Identities=21% Similarity=0.339 Sum_probs=42.0
Q ss_pred ceEEEEcc-cHHhHHHHHHHHHC-CCcEE-EEeCChhHHHHHHhCCCCCCCCHHHHhh-cCCEEEEeCCCchHHHHHh
Q 018506 46 ESVGFIGL-GNMGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSDMGVPTKETPFEVAE-ASDVVITMLPSSSHVLDVY 119 (355)
Q Consensus 46 mkIgiIG~-G~mG~~ia~~L~~~-G~~V~-v~dr~~~~~~~l~~~g~~~~~s~~e~~~-~aDiVi~~v~~~~~~~~vl 119 (355)
|||+|+|+ |.||+.++..+.+. ++++. ++|++ +++++++. .+|+||-+.+. ..+.+.+
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~---------------~dl~~~~~~~~DvvIDfT~p-~a~~~~~ 62 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAG---------------DPLSLLTDGNTEVVIDFTHP-DVVMGNL 62 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTT---------------CCTHHHHHTTCCEEEECSCT-TTHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccC---------------CCHHHHhccCCcEEEEccCh-HHHHHHH
Confidence 68999996 99999999999865 89876 55664 34555554 79999966533 3444444
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00025 Score=65.82 Aligned_cols=91 Identities=15% Similarity=0.150 Sum_probs=56.5
Q ss_pred CCceEEEEc-ccHHhHHHHHHHHHCC-----C-cEEEEe-C-ChhH-HHH----HHh-CCCCCC-CCHHHHhhcCCEEEE
Q 018506 44 QFESVGFIG-LGNMGFRMASNLMKAG-----Y-KMAVHD-V-NCNV-MKM----FSD-MGVPTK-ETPFEVAEASDVVIT 107 (355)
Q Consensus 44 ~~mkIgiIG-~G~mG~~ia~~L~~~G-----~-~V~v~d-r-~~~~-~~~----l~~-~g~~~~-~s~~e~~~~aDiVi~ 107 (355)
+||||+|+| .|.+|..+.+.|.+.+ + ++..+. + +..+ +.. +.. ...... .+. +.+.++|+||+
T Consensus 8 ~m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~~~~-~~~~~~DvVf~ 86 (352)
T 2nqt_A 8 NATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVEPTEA-AVLGGHDAVFL 86 (352)
T ss_dssp SCEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCEECCH-HHHTTCSEEEE
T ss_pred cCCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeeeccCCH-HHhcCCCEEEE
Confidence 468999999 9999999999999887 3 566554 2 3222 221 111 112221 133 34568999999
Q ss_pred eCCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCH
Q 018506 108 MLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDP 145 (355)
Q Consensus 108 ~v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~ 145 (355)
|++.... +++... + + .|..+||.|+..-
T Consensus 87 alg~~~s-~~~~~~---~-~-----~G~~vIDlSa~~R 114 (352)
T 2nqt_A 87 ALPHGHS-AVLAQQ---L-S-----PETLIIDCGADFR 114 (352)
T ss_dssp CCTTSCC-HHHHHH---S-C-----TTSEEEECSSTTT
T ss_pred CCCCcch-HHHHHH---H-h-----CCCEEEEECCCcc
Confidence 9987532 333322 2 2 3468999988763
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00025 Score=61.16 Aligned_cols=66 Identities=17% Similarity=0.294 Sum_probs=46.9
Q ss_pred CceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC----CCCC--CCCHHHHhhcCCEEEEeCC
Q 018506 45 FESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM----GVPT--KETPFEVAEASDVVITMLP 110 (355)
Q Consensus 45 ~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~----g~~~--~~s~~e~~~~aDiVi~~v~ 110 (355)
||||.|.| .|.+|+.+++.|.+.|++|++.+|++++.+.+... .... ..+..++++++|+||.+..
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~ 76 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENEHLKVKKADVSSLDEVCEVCKGADAVISAFN 76 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCCTTEEEECCCTTCHHHHHHHHTTCSEEEECCC
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhccCceEEEEecCCCHHHHHHHhcCCCEEEEeCc
Confidence 58999998 69999999999999999999999998765433110 0111 1223445667777777653
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00016 Score=65.26 Aligned_cols=94 Identities=12% Similarity=0.026 Sum_probs=62.6
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC-C----------CCCCCCHHHHhhcCCEEEEeCCCc
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-G----------VPTKETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~-g----------~~~~~s~~e~~~~aDiVi~~v~~~ 112 (355)
..+++.|+|+|.+|.+++..|++.| +|++++|++++++.+.+. + +.. .+..+.+..+|+||.+++..
T Consensus 127 ~~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~~~~~~DilVn~ag~~ 204 (287)
T 1nvt_A 127 KDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKF-SGLDVDLDGVDIIINATPIG 204 (287)
T ss_dssp CSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEE-ECTTCCCTTCCEEEECSCTT
T ss_pred CCCEEEEECchHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhcccccceeEEE-eeHHHhhCCCCEEEECCCCC
Confidence 4468999999999999999999999 999999999887776531 0 011 12234557899999998764
Q ss_pred hHH--HHHhcCCCccccCCCCCCCeEEEEcCCCC
Q 018506 113 SHV--LDVYNGPNGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 113 ~~~--~~vl~~~~~~l~~~~~~~~~ivi~~st~~ 144 (355)
..- +.........+ .++.+++|++..+
T Consensus 205 ~~~~~~~~~~~~~~~l-----~~~~~v~Dv~y~p 233 (287)
T 1nvt_A 205 MYPNIDVEPIVKAEKL-----REDMVVMDLIYNP 233 (287)
T ss_dssp CTTCCSSCCSSCSTTC-----CSSSEEEECCCSS
T ss_pred CCCCCCCCCCCCHHHc-----CCCCEEEEeeeCC
Confidence 210 00000001112 2457899998753
|
| >1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0017 Score=59.98 Aligned_cols=69 Identities=23% Similarity=0.384 Sum_probs=48.3
Q ss_pred CceEEEEcccHHhHHHHHHHHHCC-CcE-EEEeCChhHHHHHHh-CCCC-----------------CCCCHHHHhhcCCE
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAG-YKM-AVHDVNCNVMKMFSD-MGVP-----------------TKETPFEVAEASDV 104 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G-~~V-~v~dr~~~~~~~l~~-~g~~-----------------~~~s~~e~~~~aDi 104 (355)
|+||||+|+|.||..+++.|.+.. .++ .+.|++++....+.. .++. ...+.+++.+++|+
T Consensus 1 ~ikVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~~vDv 80 (340)
T 1b7g_O 1 MVNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDI 80 (340)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSE
T ss_pred CeEEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhhcCCCE
Confidence 369999999999999999998753 354 466787665443322 2332 23344555568999
Q ss_pred EEEeCCCch
Q 018506 105 VITMLPSSS 113 (355)
Q Consensus 105 Vi~~v~~~~ 113 (355)
||.|+|...
T Consensus 81 V~~aTp~~~ 89 (340)
T 1b7g_O 81 VVDTTPNGV 89 (340)
T ss_dssp EEECCSTTH
T ss_pred EEECCCCch
Confidence 999998764
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00054 Score=63.17 Aligned_cols=92 Identities=13% Similarity=0.154 Sum_probs=56.9
Q ss_pred CCceEEEEc-ccHHhHHHHHHHHHC-CCcEEEE-eCC----h-hHHHH----HHhC-CCCCCC--CHHHHhhcCCEEEEe
Q 018506 44 QFESVGFIG-LGNMGFRMASNLMKA-GYKMAVH-DVN----C-NVMKM----FSDM-GVPTKE--TPFEVAEASDVVITM 108 (355)
Q Consensus 44 ~~mkIgiIG-~G~mG~~ia~~L~~~-G~~V~v~-dr~----~-~~~~~----l~~~-g~~~~~--s~~e~~~~aDiVi~~ 108 (355)
.|+||+|+| .|.+|..+.+.|.+. .+++..+ .++ . .++.. +... ...+.. +.++..+++|+||+|
T Consensus 3 ~M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~~~~~~~~~Dvvf~a 82 (337)
T 3dr3_A 3 AMLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSDISEFSPGVDVVFLA 82 (337)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESSGGGTCTTCSEEEEC
T ss_pred CceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEeccCCHHHHhcCCCEEEEC
Confidence 468999999 699999999999984 4566655 333 1 12222 2111 122222 344444799999999
Q ss_pred CCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCC
Q 018506 109 LPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 109 v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~ 144 (355)
+|... .++.... +++ .|..+||.|+-.
T Consensus 83 ~p~~~-s~~~~~~---~~~-----~g~~vIDlSa~f 109 (337)
T 3dr3_A 83 TAHEV-SHDLAPQ---FLE-----AGCVVFDLSGAF 109 (337)
T ss_dssp SCHHH-HHHHHHH---HHH-----TTCEEEECSSTT
T ss_pred CChHH-HHHHHHH---HHH-----CCCEEEEcCCcc
Confidence 99753 3333322 232 356899999875
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0008 Score=61.18 Aligned_cols=66 Identities=24% Similarity=0.291 Sum_probs=49.0
Q ss_pred ceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChh-HHH---HHHhCCCCC-------CCCHHHHhhcCCEEEEeCCC
Q 018506 46 ESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCN-VMK---MFSDMGVPT-------KETPFEVAEASDVVITMLPS 111 (355)
Q Consensus 46 mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~-~~~---~l~~~g~~~-------~~s~~e~~~~aDiVi~~v~~ 111 (355)
++|.|.|+ |.+|+.+++.|.+.||+|++.+|+++ +.+ .+...++.. .+++.++++.+|+||.+...
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a~~ 89 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVISALAF 89 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCCG
T ss_pred CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEECCch
Confidence 47999985 99999999999999999999999874 333 233344322 12345667889999988753
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0015 Score=60.49 Aligned_cols=65 Identities=23% Similarity=0.209 Sum_probs=50.5
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhh-cCCEEEEe
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAE-ASDVVITM 108 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~-~aDiVi~~ 108 (355)
..-.+|+|+|.|++|..+++.|...|.+|+++|+++++.+...+.++... +.++++. +||+++-|
T Consensus 173 L~GktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~~~~a~~~ga~~v-~~~ell~~~~DIliP~ 238 (355)
T 1c1d_A 173 LDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAV-ALEDVLSTPCDVFAPC 238 (355)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC-CGGGGGGCCCSEEEEC
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHhcCCEEe-ChHHhhcCccceecHh
Confidence 35578999999999999999999999999999999876222233455444 5567666 89998865
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.001 Score=61.59 Aligned_cols=90 Identities=13% Similarity=0.128 Sum_probs=55.0
Q ss_pred CCceEEEEc-ccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHh--------CCCCCCCCHHHHhhcCCEEEEeCCCch
Q 018506 44 QFESVGFIG-LGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSD--------MGVPTKETPFEVAEASDVVITMLPSSS 113 (355)
Q Consensus 44 ~~mkIgiIG-~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~--------~g~~~~~s~~e~~~~aDiVi~~v~~~~ 113 (355)
+++||+|+| .|.+|..+.+.|.+..+ ++....+..+.-.++.+ .... ..+.++ +.++|+||+|+|...
T Consensus 3 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~-~~~~~~-~~~vDvV~~a~g~~~ 80 (345)
T 2ozp_A 3 GKKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLK-FVPPEK-LEPADILVLALPHGV 80 (345)
T ss_dssp -CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCB-CBCGGG-CCCCSEEEECCCTTH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHhCchhcCccccc-ccchhH-hcCCCEEEEcCCcHH
Confidence 358999999 69999999999997654 66655443222112211 1111 223334 478999999999864
Q ss_pred HHHHHhcCCCccccCCCCCCCeEEEEcCCCC
Q 018506 114 HVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 114 ~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~ 144 (355)
. .+.... +++ .|..+||.|+..
T Consensus 81 s-~~~a~~---~~~-----aG~~VId~Sa~~ 102 (345)
T 2ozp_A 81 F-AREFDR---YSA-----LAPVLVDLSADF 102 (345)
T ss_dssp H-HHTHHH---HHT-----TCSEEEECSSTT
T ss_pred H-HHHHHH---HHH-----CCCEEEEcCccc
Confidence 3 332221 232 345789988854
|
| >2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00019 Score=66.06 Aligned_cols=71 Identities=13% Similarity=0.229 Sum_probs=50.6
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCC---------CcE-EEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCch
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAG---------YKM-AVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSS 113 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G---------~~V-~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~ 113 (355)
+++||||||+|.||+.+++.|.+.. .+| .++||++++.+.+. ....++|.++++ +.|+|+.|+|+..
T Consensus 2 k~irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~~~--~~~~~~d~~~ll-~iDvVve~t~~~~ 78 (332)
T 2ejw_A 2 EALKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKPRAIP--QELLRAEPFDLL-EADLVVEAMGGVE 78 (332)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSCCSSC--GGGEESSCCCCT-TCSEEEECCCCSH
T ss_pred CeeEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHhhccC--cccccCCHHHHh-CCCEEEECCCCcH
Confidence 3579999999999999999998763 343 57788876533221 112456777777 8999999999764
Q ss_pred HHHH
Q 018506 114 HVLD 117 (355)
Q Consensus 114 ~~~~ 117 (355)
...+
T Consensus 79 ~a~~ 82 (332)
T 2ejw_A 79 APLR 82 (332)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
|
| >3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0004 Score=67.16 Aligned_cols=64 Identities=17% Similarity=0.325 Sum_probs=46.5
Q ss_pred ceEEEEcccHHhHH--HHHHHHHC------CCcEEEEeCChhHHHHHH--------hCC----CCCCCCHHHHhhcCCEE
Q 018506 46 ESVGFIGLGNMGFR--MASNLMKA------GYKMAVHDVNCNVMKMFS--------DMG----VPTKETPFEVAEASDVV 105 (355)
Q Consensus 46 mkIgiIG~G~mG~~--ia~~L~~~------G~~V~v~dr~~~~~~~l~--------~~g----~~~~~s~~e~~~~aDiV 105 (355)
|||+|||+|..|.+ +...++.. +.+|+++|+++++++... ..+ +..+++..+++++||+|
T Consensus 1 mKI~iIGaGs~~~t~~l~~~~~~~~~l~~~~~ei~L~Di~~~rl~~~~~~~~~~~~~~~~~~~i~~t~d~~eAl~gAD~V 80 (477)
T 3u95_A 1 MKISIVGAGSVRFALQLVEDIAQTDELSREDTHIYLMDVHERRLNASYILARKYVEELNSPVKVVKTESLDEAIEGADFI 80 (477)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTCTTTCSTTCEEEEECSCHHHHHHHHHHHHHHHHHHTCCCEEEEESCHHHHHTTCSEE
T ss_pred CEEEEECCCchhhHHHHHHHHHhhHhcCCCCCEEEEECCCHHHHHHHHHHHHHHHHHcCCCeEEEEeCCHHHHhCCCCEE
Confidence 79999999998755 33334432 247999999998875422 112 34467889999999999
Q ss_pred EEeC
Q 018506 106 ITML 109 (355)
Q Consensus 106 i~~v 109 (355)
|++.
T Consensus 81 i~~~ 84 (477)
T 3u95_A 81 INTA 84 (477)
T ss_dssp EECC
T ss_pred EECc
Confidence 9986
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0012 Score=59.63 Aligned_cols=67 Identities=21% Similarity=0.275 Sum_probs=49.2
Q ss_pred CceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCCh------hHHHH---HHhCCCCC-----C--CCHHHHhhcCCEEEE
Q 018506 45 FESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNC------NVMKM---FSDMGVPT-----K--ETPFEVAEASDVVIT 107 (355)
Q Consensus 45 ~mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~------~~~~~---l~~~g~~~-----~--~s~~e~~~~aDiVi~ 107 (355)
+|+|.|.|+ |.+|+.+++.|++.||+|++.+|++ ++.+. +...++.. . .++.++++.+|+||.
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi~ 83 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVIS 83 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCCEEEE
Confidence 578999986 9999999999999999999999973 34332 22334321 1 234556778999998
Q ss_pred eCCC
Q 018506 108 MLPS 111 (355)
Q Consensus 108 ~v~~ 111 (355)
+...
T Consensus 84 ~a~~ 87 (308)
T 1qyc_A 84 TVGS 87 (308)
T ss_dssp CCCG
T ss_pred CCcc
Confidence 8754
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0033 Score=60.42 Aligned_cols=65 Identities=22% Similarity=0.234 Sum_probs=50.8
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCCh----hHHHHHHhCCCCCC--CCHHHHhhc-CCEEEEe
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC----NVMKMFSDMGVPTK--ETPFEVAEA-SDVVITM 108 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~----~~~~~l~~~g~~~~--~s~~e~~~~-aDiVi~~ 108 (355)
+.+||.|||+|..|.+.|+.|.+.|++|+++|+++ ...+.+.+.|+.+. ..+.+...+ +|+||++
T Consensus 8 ~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~gi~~~~g~~~~~~~~~~~d~vv~s 79 (451)
T 3lk7_A 8 ENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSHPLELLDEDFCYMIKN 79 (451)
T ss_dssp TTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTTCEEEESCCCGGGGGSCEEEEEEC
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHhCCCEEEECCChHHhhcCCCCEEEEC
Confidence 45789999999999999999999999999999854 34566777776543 233445566 8999987
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00041 Score=59.52 Aligned_cols=37 Identities=14% Similarity=0.274 Sum_probs=33.9
Q ss_pred ceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHH
Q 018506 46 ESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMK 82 (355)
Q Consensus 46 mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~ 82 (355)
|||.|.| .|.+|..+++.|++.|++|++.+|++++.+
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~ 38 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVP 38 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSC
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchh
Confidence 6899998 899999999999999999999999987654
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00066 Score=63.16 Aligned_cols=68 Identities=13% Similarity=0.231 Sum_probs=50.7
Q ss_pred CCCCceEEEEc-ccHHhHHHHHHHHHC-CCcEEEEeCChhHHHHHHh-CCC-----CCC---CCHHHHhhcCCEEEEeC
Q 018506 42 SCQFESVGFIG-LGNMGFRMASNLMKA-GYKMAVHDVNCNVMKMFSD-MGV-----PTK---ETPFEVAEASDVVITML 109 (355)
Q Consensus 42 ~~~~mkIgiIG-~G~mG~~ia~~L~~~-G~~V~v~dr~~~~~~~l~~-~g~-----~~~---~s~~e~~~~aDiVi~~v 109 (355)
.+++|+|.|.| .|.+|+.++..|.+. ||+|++.+|++++...+.. .++ ... .+..++++++|+||-+.
T Consensus 21 ~m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~~~~~d~Vih~A 99 (372)
T 3slg_A 21 SMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWVEYHVKKCDVILPLV 99 (372)
T ss_dssp --CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGGSTTEEEEECCTTTCHHHHHHHHHHCSEEEECB
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhccCCCeEEEeCccCCCHHHHHHHhccCCEEEEcC
Confidence 35678999998 699999999999998 9999999999877666543 221 222 23445677899999764
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00083 Score=62.49 Aligned_cols=90 Identities=17% Similarity=0.213 Sum_probs=54.5
Q ss_pred CceEEEEc-ccHHhHHHHHHHHHCC-CcEEEEeCChh----HHHHHHhC-----------CCCCC-CCHHHHhh-cCCEE
Q 018506 45 FESVGFIG-LGNMGFRMASNLMKAG-YKMAVHDVNCN----VMKMFSDM-----------GVPTK-ETPFEVAE-ASDVV 105 (355)
Q Consensus 45 ~mkIgiIG-~G~mG~~ia~~L~~~G-~~V~v~dr~~~----~~~~l~~~-----------g~~~~-~s~~e~~~-~aDiV 105 (355)
++||+|+| .|.+|..+++.|.+.. ++|....+++. .+...... ..... .+++++.+ ++|+|
T Consensus 8 ~~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV 87 (354)
T 1ys4_A 8 KIKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKHEEFEDVDIV 87 (354)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEESCTTSGGGTTCCEE
T ss_pred cceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCceeeEEEeCCHHHHhcCCCCEE
Confidence 37999999 8999999999998764 46765543221 12211110 11111 24455556 89999
Q ss_pred EEeCCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCC
Q 018506 106 ITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 143 (355)
Q Consensus 106 i~~v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~ 143 (355)
|+|+|... ..+.... +++ .|..|||.++.
T Consensus 88 ~~atp~~~-~~~~a~~---~~~-----aG~~VId~s~~ 116 (354)
T 1ys4_A 88 FSALPSDL-AKKFEPE---FAK-----EGKLIFSNASA 116 (354)
T ss_dssp EECCCHHH-HHHHHHH---HHH-----TTCEEEECCST
T ss_pred EECCCchH-HHHHHHH---HHH-----CCCEEEECCch
Confidence 99998753 3333322 232 34578898875
|
| >3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0002 Score=61.40 Aligned_cols=74 Identities=19% Similarity=0.272 Sum_probs=51.1
Q ss_pred CCceEEEEcccHHhHHHHHHH--HHCCCcE-EEEeCChh-HHHH-HHhCCCCC--CCCHHHHhh--cCCEEEEeCCCchH
Q 018506 44 QFESVGFIGLGNMGFRMASNL--MKAGYKM-AVHDVNCN-VMKM-FSDMGVPT--KETPFEVAE--ASDVVITMLPSSSH 114 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L--~~~G~~V-~v~dr~~~-~~~~-l~~~g~~~--~~s~~e~~~--~aDiVi~~v~~~~~ 114 (355)
+..+++|+|+|++|.++++.+ .+.|+++ .++|.+|+ +... .. .|+.+ .+++++.++ +.|++++|+|+. .
T Consensus 83 ~~~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG~~~i-~GvpV~~~~dL~~~v~~~~Id~vIIAvPs~-~ 160 (212)
T 3keo_A 83 STTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTE-DGIPVYGISTINDHLIDSDIETAILTVPST-E 160 (212)
T ss_dssp SCEEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTTCBCT-TCCBEEEGGGHHHHC-CCSCCEEEECSCGG-G
T ss_pred CCCEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchhccCceeE-CCeEEeCHHHHHHHHHHcCCCEEEEecCch-h
Confidence 456899999999999999984 4556764 56799988 6644 22 24433 356666665 489999999975 3
Q ss_pred HHHHh
Q 018506 115 VLDVY 119 (355)
Q Consensus 115 ~~~vl 119 (355)
.+++.
T Consensus 161 aq~v~ 165 (212)
T 3keo_A 161 AQEVA 165 (212)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 34443
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0015 Score=59.03 Aligned_cols=67 Identities=21% Similarity=0.291 Sum_probs=49.8
Q ss_pred CceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCC-----hhHHHHH---HhCCCCC-----C--CCHHHHhhcCCEEEEe
Q 018506 45 FESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVN-----CNVMKMF---SDMGVPT-----K--ETPFEVAEASDVVITM 108 (355)
Q Consensus 45 ~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~-----~~~~~~l---~~~g~~~-----~--~s~~e~~~~aDiVi~~ 108 (355)
+|+|.|.| .|.+|+.++..|.+.|++|++.+|+ +++.+.+ ...++.. . .++.++++.+|+||.+
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~ 83 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISA 83 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEEC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCCEEEEC
Confidence 57899998 5999999999999999999999998 4454433 2334321 1 2345667889999988
Q ss_pred CCC
Q 018506 109 LPS 111 (355)
Q Consensus 109 v~~ 111 (355)
...
T Consensus 84 a~~ 86 (313)
T 1qyd_A 84 LAG 86 (313)
T ss_dssp CCC
T ss_pred Ccc
Confidence 753
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0013 Score=59.27 Aligned_cols=67 Identities=19% Similarity=0.224 Sum_probs=50.3
Q ss_pred CceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCCh-------hHHHHH---HhCCCCC-----C--CCHHHHhhcCCEEE
Q 018506 45 FESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNC-------NVMKMF---SDMGVPT-----K--ETPFEVAEASDVVI 106 (355)
Q Consensus 45 ~mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~-------~~~~~l---~~~g~~~-----~--~s~~e~~~~aDiVi 106 (355)
+|+|.|.|+ |.+|+.+++.|++.||+|++.+|++ ++.+.+ ...++.. . .++.++++.+|+||
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi 81 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVDIVI 81 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhCCCEEE
Confidence 578999986 9999999999999999999999986 554433 2344321 1 23456677899999
Q ss_pred EeCCC
Q 018506 107 TMLPS 111 (355)
Q Consensus 107 ~~v~~ 111 (355)
.+...
T Consensus 82 ~~a~~ 86 (307)
T 2gas_A 82 CAAGR 86 (307)
T ss_dssp ECSSS
T ss_pred ECCcc
Confidence 88754
|
| >2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0059 Score=56.37 Aligned_cols=69 Identities=23% Similarity=0.380 Sum_probs=47.1
Q ss_pred CceEEEEcccHHhHHHHHHHHHC-CCcEE-EEeCChhHHHH---------------------HHhCCCCCCCCHHHHhhc
Q 018506 45 FESVGFIGLGNMGFRMASNLMKA-GYKMA-VHDVNCNVMKM---------------------FSDMGVPTKETPFEVAEA 101 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~-G~~V~-v~dr~~~~~~~---------------------l~~~g~~~~~s~~e~~~~ 101 (355)
|+||||+|+|.+|..+++.|.+. +.+|. +.|++++.... +.+.++.+..+..+...+
T Consensus 2 mikVgI~G~G~IGr~v~r~l~~~~~~evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~~~~~ 81 (343)
T 2yyy_A 2 PAKVLINGYGSIGKRVADAVSMQDDMEVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPVEGTILDIIED 81 (343)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCCCCBGGGTGGG
T ss_pred ceEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhcCCccccccCCCceeecccCCeEEECCchHHhccC
Confidence 46999999999999999999876 46654 44555444322 222333333445555568
Q ss_pred CCEEEEeCCCch
Q 018506 102 SDVVITMLPSSS 113 (355)
Q Consensus 102 aDiVi~~v~~~~ 113 (355)
+|+||.|.|...
T Consensus 82 vDiV~eatg~~~ 93 (343)
T 2yyy_A 82 ADIVVDGAPKKI 93 (343)
T ss_dssp CSEEEECCCTTH
T ss_pred CCEEEECCCccc
Confidence 999999998753
|
| >2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00016 Score=62.10 Aligned_cols=69 Identities=10% Similarity=0.137 Sum_probs=49.2
Q ss_pred CCceEEEEcccHHhHHHHHHHHH-CCCcE-EEEeCChhHHHHHHh-CCCCCCCCHHHHhh-cCCEEEEeCCCc
Q 018506 44 QFESVGFIGLGNMGFRMASNLMK-AGYKM-AVHDVNCNVMKMFSD-MGVPTKETPFEVAE-ASDVVITMLPSS 112 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~-~G~~V-~v~dr~~~~~~~l~~-~g~~~~~s~~e~~~-~aDiVi~~v~~~ 112 (355)
..++|+|||+|++|..+++.+.. .|+++ .++|.++++...... ..+...+++.+.++ +.|+|++|+|..
T Consensus 79 ~~~rV~IIGaG~~G~~la~~~~~~~g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~ell~~~ID~ViIA~Ps~ 151 (211)
T 2dt5_A 79 RKWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGRPVRGGVIEHVDLLPQRVPGRIEIALLTVPRE 151 (211)
T ss_dssp SCEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEETTEEEEEGGGHHHHSTTTCCEEEECSCHH
T ss_pred CCCEEEEECccHHHHHHHHhHhhcCCcEEEEEEeCCHHHHhhhhcCCeeecHHhHHHHHHcCCCEEEEeCCch
Confidence 44789999999999999996322 26664 567999888654332 12223567777765 589999999965
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0011 Score=60.78 Aligned_cols=67 Identities=13% Similarity=0.104 Sum_probs=49.6
Q ss_pred CCceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCC-----CC--CCHHHHhhcCCEEEEeCC
Q 018506 44 QFESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-----TK--ETPFEVAEASDVVITMLP 110 (355)
Q Consensus 44 ~~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~-----~~--~s~~e~~~~aDiVi~~v~ 110 (355)
.+|+|.|.| .|.+|+.+++.|++.||+|++.+|++++.+.+.+.++. .. .+..++++.+|+||-+..
T Consensus 12 ~~M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~a~ 86 (342)
T 2x4g_A 12 AHVKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEPECRVAEMLDHAGLERALRGLDGVIFSAG 86 (342)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGGGGGCCEEEECCTTCHHHHHHHTTTCSEEEEC--
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhhccCCeEEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence 457999998 59999999999999999999999988766555432321 11 234456778999998763
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0023 Score=55.65 Aligned_cols=67 Identities=9% Similarity=0.058 Sum_probs=48.8
Q ss_pred CCCceEEEEc-ccHHhHHHHHHHHHC--CCcEEEEeCChhHHHHHHhCCCC-----CC--CCHHHHhhcCCEEEEeCC
Q 018506 43 CQFESVGFIG-LGNMGFRMASNLMKA--GYKMAVHDVNCNVMKMFSDMGVP-----TK--ETPFEVAEASDVVITMLP 110 (355)
Q Consensus 43 ~~~mkIgiIG-~G~mG~~ia~~L~~~--G~~V~v~dr~~~~~~~l~~~g~~-----~~--~s~~e~~~~aDiVi~~v~ 110 (355)
+.+|+|.|.| .|.+|..+++.|++. |++|++.+|++++.+.+. .++. .. .+..++++..|+||.+..
T Consensus 2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~~-~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~ 78 (253)
T 1xq6_A 2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIG-GEADVFIGDITDADSINPAFQGIDALVILTS 78 (253)
T ss_dssp CSCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHTT-CCTTEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhcC-CCeeEEEecCCCHHHHHHHHcCCCEEEEecc
Confidence 3567899997 699999999999999 899999999988776542 1221 11 233455667788777654
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0011 Score=59.30 Aligned_cols=65 Identities=14% Similarity=0.129 Sum_probs=49.3
Q ss_pred ceEEEEc-ccHHhHHHHHHHHHC-CCcEEEEeCChhHHHHHHhCCCCC-------CCCHHHHhhcCCEEEEeCC
Q 018506 46 ESVGFIG-LGNMGFRMASNLMKA-GYKMAVHDVNCNVMKMFSDMGVPT-------KETPFEVAEASDVVITMLP 110 (355)
Q Consensus 46 mkIgiIG-~G~mG~~ia~~L~~~-G~~V~v~dr~~~~~~~l~~~g~~~-------~~s~~e~~~~aDiVi~~v~ 110 (355)
|||.|.| .|.+|+.++..|.+. |++|.+.+|++++...+...++.. ..+..++++.+|+||.+..
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~ 74 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPS 74 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCC
Confidence 6899998 599999999999998 999999999998776554443221 1234456677888887754
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00053 Score=63.23 Aligned_cols=67 Identities=15% Similarity=0.068 Sum_probs=52.9
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCC----CCCHH---HH-hhcCCEEEEeCCCch
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT----KETPF---EV-AEASDVVITMLPSSS 113 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~----~~s~~---e~-~~~aDiVi~~v~~~~ 113 (355)
.++|-|+|.|.+|..+++.|.+.|+ |++.|+++++++ +.+.+... .++.+ ++ ++++|.+++++++++
T Consensus 115 ~~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~~~d~ 189 (336)
T 1lnq_A 115 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKK-VLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESDS 189 (336)
T ss_dssp -CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHHTTCEEEESCTTSHHHHHHTCSTTEEEEEECCSSHH
T ss_pred cCCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHhCCcEEEEeCCCCHHHHHhcChhhccEEEEcCCccH
Confidence 4689999999999999999999999 999999999998 77665432 12222 23 467899999998763
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0018 Score=58.83 Aligned_cols=68 Identities=22% Similarity=0.269 Sum_probs=49.9
Q ss_pred CCceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCCh------hHHHHH---HhCCCCC-------CCCHHHHhhcCCEEE
Q 018506 44 QFESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNC------NVMKMF---SDMGVPT-------KETPFEVAEASDVVI 106 (355)
Q Consensus 44 ~~mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~------~~~~~l---~~~g~~~-------~~s~~e~~~~aDiVi 106 (355)
+||+|.|.|+ |.+|+.+++.|++.||+|.+.+|++ ++.+.+ ...++.. .+++.++++.+|+||
T Consensus 3 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~~d~vi 82 (321)
T 3c1o_A 3 HMEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQVDIVI 82 (321)
T ss_dssp -CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred cccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcCCCEEE
Confidence 4578999985 9999999999999999999999986 343332 3334321 123556778899999
Q ss_pred EeCCC
Q 018506 107 TMLPS 111 (355)
Q Consensus 107 ~~v~~ 111 (355)
.+...
T Consensus 83 ~~a~~ 87 (321)
T 3c1o_A 83 SALPF 87 (321)
T ss_dssp ECCCG
T ss_pred ECCCc
Confidence 88753
|
| >3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0024 Score=58.57 Aligned_cols=69 Identities=20% Similarity=0.313 Sum_probs=48.7
Q ss_pred CceEEEEcccHHhHHHHHHHHHC---------CCcE-EEEeCChhHHHH------HHh--CCCCCCC--CHHHHhh--cC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKA---------GYKM-AVHDVNCNVMKM------FSD--MGVPTKE--TPFEVAE--AS 102 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~---------G~~V-~v~dr~~~~~~~------l~~--~g~~~~~--s~~e~~~--~a 102 (355)
|+||||||+|.||+.+++.|.+. +.+| .++|+++++.+. +.. ......+ +.+++++ +.
T Consensus 2 mirvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~~~~~~~~~~~d~~~ll~~~~i 81 (327)
T 3do5_A 2 MIKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRETGMLRDDAKAIEVVRSADY 81 (327)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHHHHHSSCSBCCCHHHHHHHSCC
T ss_pred cEEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhhccCccccCCCCHHHHhcCCCC
Confidence 68999999999999999999875 4454 466887554221 111 1123444 8888885 58
Q ss_pred CEEEEeCCCch
Q 018506 103 DVVITMLPSSS 113 (355)
Q Consensus 103 DiVi~~v~~~~ 113 (355)
|+|+.|+|+..
T Consensus 82 DvVv~~tp~~~ 92 (327)
T 3do5_A 82 DVLIEASVTRV 92 (327)
T ss_dssp SEEEECCCCC-
T ss_pred CEEEECCCCcc
Confidence 99999999763
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0043 Score=56.59 Aligned_cols=42 Identities=17% Similarity=0.193 Sum_probs=36.5
Q ss_pred CCCceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHH
Q 018506 43 CQFESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMF 84 (355)
Q Consensus 43 ~~~mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l 84 (355)
++.|+|.|.|+ |.+|+.++..|++.||+|++.+|++++.+.+
T Consensus 9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~ 51 (342)
T 1y1p_A 9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANL 51 (342)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHH
Confidence 45578999986 9999999999999999999999998776544
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0019 Score=58.44 Aligned_cols=64 Identities=13% Similarity=0.152 Sum_probs=47.0
Q ss_pred CceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh-----CCCCCCCCHHHHhhcCCEEEEeCC
Q 018506 45 FESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----MGVPTKETPFEVAEASDVVITMLP 110 (355)
Q Consensus 45 ~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~-----~g~~~~~s~~e~~~~aDiVi~~v~ 110 (355)
+|+|.|.| .|.+|+.++..|.+.|++|++.+|+++..+ +.. ..+. ..+..++++.+|+||-+..
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~~~~~~Dl~-~~~~~~~~~~~d~Vih~a~ 71 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKA-INDYEYRVSDYT-LEDLINQLNDVDAVVHLAA 71 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC------CCEEEECCCC-HHHHHHHTTTCSEEEECCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCccc-CCceEEEEcccc-HHHHHHhhcCCCEEEEccc
Confidence 47899998 699999999999999999999999865544 321 1223 3445667788999998753
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0019 Score=59.27 Aligned_cols=65 Identities=11% Similarity=0.229 Sum_probs=47.7
Q ss_pred CceEEEEcc-cHHhHHHHHHHHHCCC-------cEEEEeCCh--hHHH----HHHhCCC------CCCCCHHHHhhcCCE
Q 018506 45 FESVGFIGL-GNMGFRMASNLMKAGY-------KMAVHDVNC--NVMK----MFSDMGV------PTKETPFEVAEASDV 104 (355)
Q Consensus 45 ~mkIgiIG~-G~mG~~ia~~L~~~G~-------~V~v~dr~~--~~~~----~l~~~g~------~~~~s~~e~~~~aDi 104 (355)
.|||.|+|+ |.+|+.++..|.+.|+ +|.++|+.+ ++.+ .+.+... ....+..++++++|+
T Consensus 4 ~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~~~di~~~~~~~~a~~~~D~ 83 (327)
T 1y7t_A 4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDADY 83 (327)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhcccccccCCeEeccChHHHhCCCCE
Confidence 379999996 9999999999999986 899999874 2222 2322111 112466778889999
Q ss_pred EEEeC
Q 018506 105 VITML 109 (355)
Q Consensus 105 Vi~~v 109 (355)
||.+.
T Consensus 84 Vih~A 88 (327)
T 1y7t_A 84 ALLVG 88 (327)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 99885
|
| >2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0016 Score=59.26 Aligned_cols=103 Identities=16% Similarity=0.188 Sum_probs=69.0
Q ss_pred CceEEEE-cc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhh--cCCEEEEeCCCchHHHHHhc
Q 018506 45 FESVGFI-GL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAE--ASDVVITMLPSSSHVLDVYN 120 (355)
Q Consensus 45 ~mkIgiI-G~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~--~aDiVi~~v~~~~~~~~vl~ 120 (355)
..+|+|| |+ |++|...++.|.+.|++ .+|+.+|.+... .-.|..+..+++|+.+ ..|++++++|.. .+.+++.
T Consensus 13 ~~siaVV~Gasg~~G~~~~~~l~~~G~~-~v~~VnP~~~g~-~i~G~~vy~sl~el~~~~~vD~avI~vP~~-~~~~~~~ 89 (305)
T 2fp4_A 13 KNTKVICQGFTGKQGTFHSQQALEYGTN-LVGGTTPGKGGK-THLGLPVFNTVKEAKEQTGATASVIYVPPP-FAAAAIN 89 (305)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTTC-EETTEEEESSHHHHHHHHCCCEEEECCCHH-HHHHHHH
T ss_pred CCcEEEEECCCCCHHHHHHHHHHHCCCc-EEEEeCCCcCcc-eECCeeeechHHHhhhcCCCCEEEEecCHH-HHHHHHH
Confidence 3568999 98 99999999999999999 455666653210 0256777889999988 899999999975 5556555
Q ss_pred CCCccccCCCCCCCeEEEEcCCCCH-HHHHHHHHHHhh
Q 018506 121 GPNGLLQGGNSVRPQLLIDSSTIDP-QTSRNISAAVSN 157 (355)
Q Consensus 121 ~~~~~l~~~~~~~~~ivi~~st~~~-~~~~~l~~~~~~ 157 (355)
+. ++.. . +.++..+.+.+ ...+++.+...+
T Consensus 90 e~---i~~G--i--~~iv~~t~G~~~~~~~~l~~~a~~ 120 (305)
T 2fp4_A 90 EA---IDAE--V--PLVVCITEGIPQQDMVRVKHRLLR 120 (305)
T ss_dssp HH---HHTT--C--SEEEECCCCCCHHHHHHHHHHHTT
T ss_pred HH---HHCC--C--CEEEEECCCCChHHHHHHHHHHHh
Confidence 42 2211 1 24455565544 333456555543
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0028 Score=58.53 Aligned_cols=67 Identities=13% Similarity=0.260 Sum_probs=50.0
Q ss_pred CCCceEEEEcc-cHHhHHHHHHHHHCCC-------cEEEEeCChhH--H----HHHHhC------CCCCCCCHHHHhhcC
Q 018506 43 CQFESVGFIGL-GNMGFRMASNLMKAGY-------KMAVHDVNCNV--M----KMFSDM------GVPTKETPFEVAEAS 102 (355)
Q Consensus 43 ~~~mkIgiIG~-G~mG~~ia~~L~~~G~-------~V~v~dr~~~~--~----~~l~~~------g~~~~~s~~e~~~~a 102 (355)
++.-||+|+|+ |.+|.+++-.|+.... ++.+||+.+.. + .++... .....+++.++++++
T Consensus 22 ~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~~~~~~a~~~a 101 (345)
T 4h7p_A 22 MSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVTADPRVAFDGV 101 (345)
T ss_dssp CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEESCHHHHTTTC
T ss_pred CCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEcCChHHHhCCC
Confidence 44569999996 9999999999987643 79999987642 1 233332 123456788899999
Q ss_pred CEEEEeC
Q 018506 103 DVVITML 109 (355)
Q Consensus 103 DiVi~~v 109 (355)
|+||++-
T Consensus 102 dvVvi~a 108 (345)
T 4h7p_A 102 AIAIMCG 108 (345)
T ss_dssp SEEEECC
T ss_pred CEEEECC
Confidence 9999985
|
| >1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0028 Score=60.12 Aligned_cols=67 Identities=16% Similarity=0.124 Sum_probs=45.6
Q ss_pred CceEEEEcccHH-hHHHHHHHHH--C---CCcEEEEeCChhHHHHHHh-------C--CCCCCCCHHHHhhcCCEEEEeC
Q 018506 45 FESVGFIGLGNM-GFRMASNLMK--A---GYKMAVHDVNCNVMKMFSD-------M--GVPTKETPFEVAEASDVVITML 109 (355)
Q Consensus 45 ~mkIgiIG~G~m-G~~ia~~L~~--~---G~~V~v~dr~~~~~~~l~~-------~--g~~~~~s~~e~~~~aDiVi~~v 109 (355)
+|||+|||+|.. +..+...|+. . +.+|.++|+++++++...+ . .+..+++..+++++||+||++.
T Consensus 2 ~~KI~IIGaG~v~~~~l~~~l~~~~~~l~~~el~L~Di~~~~~~~~~~~~~~~~~~~~~v~~t~d~~~al~~AD~Viita 81 (417)
T 1up7_A 2 HMRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQF 81 (417)
T ss_dssp CCEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEECC
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcccCCCcCEEEEEeCCHHHHHHHHHHHHHHhhCCeEEEEeCCHHHHhCCCCEEEEcC
Confidence 589999999985 2222334454 2 5689999999988654221 1 1223457778899999999998
Q ss_pred CC
Q 018506 110 PS 111 (355)
Q Consensus 110 ~~ 111 (355)
-.
T Consensus 82 gv 83 (417)
T 1up7_A 82 RP 83 (417)
T ss_dssp CT
T ss_pred CC
Confidence 43
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0024 Score=59.70 Aligned_cols=67 Identities=18% Similarity=0.157 Sum_probs=47.4
Q ss_pred CCCceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCC-----CC--CCHHHHhhcCCEEEEeC
Q 018506 43 CQFESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-----TK--ETPFEVAEASDVVITML 109 (355)
Q Consensus 43 ~~~mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~-----~~--~s~~e~~~~aDiVi~~v 109 (355)
..+|+|.|.|+ |.+|+.++..|++.||+|++.+|+++........++. .. .+..++++.+|+||-+.
T Consensus 27 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~d~Vih~A 101 (379)
T 2c5a_A 27 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLA 101 (379)
T ss_dssp TSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECC
T ss_pred ccCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhhccCCceEEECCCCCHHHHHHHhCCCCEEEECc
Confidence 35689999987 9999999999999999999999987653322212211 11 12345566788888775
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0016 Score=59.51 Aligned_cols=64 Identities=23% Similarity=0.269 Sum_probs=47.1
Q ss_pred ceEEEEcc-cHHhHHHHHHHHHCCC--cEEEEeC--ChhHHHH----HHh----C--CCCCCC---CHHHHhhcCCEEEE
Q 018506 46 ESVGFIGL-GNMGFRMASNLMKAGY--KMAVHDV--NCNVMKM----FSD----M--GVPTKE---TPFEVAEASDVVIT 107 (355)
Q Consensus 46 mkIgiIG~-G~mG~~ia~~L~~~G~--~V~v~dr--~~~~~~~----l~~----~--g~~~~~---s~~e~~~~aDiVi~ 107 (355)
|||.|+|+ |.+|++++..|...|+ ++.++|+ ++++++. +.+ . ...... +..++++++|+||.
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~l~~al~gaD~Vi~ 80 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII 80 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCCcchHHHhCCCCEEEE
Confidence 69999999 9999999999998885 6889999 7654432 222 1 112211 24778899999999
Q ss_pred eC
Q 018506 108 ML 109 (355)
Q Consensus 108 ~v 109 (355)
+.
T Consensus 81 ~A 82 (313)
T 1hye_A 81 TS 82 (313)
T ss_dssp CC
T ss_pred CC
Confidence 86
|
| >3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0014 Score=51.05 Aligned_cols=72 Identities=14% Similarity=0.144 Sum_probs=56.4
Q ss_pred CCceEEEEcc----cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHh
Q 018506 44 QFESVGFIGL----GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVY 119 (355)
Q Consensus 44 ~~mkIgiIG~----G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl 119 (355)
...+|+|||+ +.+|..+.++|.+.||+|+-+|...+.+ .|.....|+.|+-. .|++++++|. +.+.+++
T Consensus 3 ~p~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~i-----~G~~~y~sl~dlp~-vDlavi~~p~-~~v~~~v 75 (122)
T 3ff4_A 3 AMKKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGEV-----LGKTIINERPVIEG-VDTVTLYINP-QNQLSEY 75 (122)
T ss_dssp CCCCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSEE-----TTEECBCSCCCCTT-CCEEEECSCH-HHHGGGH
T ss_pred CCCEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCcC-----CCeeccCChHHCCC-CCEEEEEeCH-HHHHHHH
Confidence 3467999998 5799999999999999999888754322 46667778888777 9999999986 4767766
Q ss_pred cCC
Q 018506 120 NGP 122 (355)
Q Consensus 120 ~~~ 122 (355)
++.
T Consensus 76 ~e~ 78 (122)
T 3ff4_A 76 NYI 78 (122)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0039 Score=56.07 Aligned_cols=43 Identities=16% Similarity=0.214 Sum_probs=37.7
Q ss_pred CCceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 44 QFESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 44 ~~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
..+++-|+| .|.+|.+++..|++.|++|++++|++++.+++.+
T Consensus 118 ~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~ 161 (287)
T 1lu9_A 118 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAAD 161 (287)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHH
Confidence 346789999 9999999999999999999999999988776653
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0024 Score=58.83 Aligned_cols=65 Identities=17% Similarity=0.185 Sum_probs=49.1
Q ss_pred CceEEEEc-ccHHhHHHHHHHHHCCC--c-----EEEEeCCh--hHH----HHHHhCC------CCCCCCHHHHhhcCCE
Q 018506 45 FESVGFIG-LGNMGFRMASNLMKAGY--K-----MAVHDVNC--NVM----KMFSDMG------VPTKETPFEVAEASDV 104 (355)
Q Consensus 45 ~mkIgiIG-~G~mG~~ia~~L~~~G~--~-----V~v~dr~~--~~~----~~l~~~g------~~~~~s~~e~~~~aDi 104 (355)
.+||+|+| +|.+|..++..|+..|. + +.++|+++ +++ ..+.+.. ....++..++++++|+
T Consensus 3 ~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~~~~~~~~~~~~~~~~daDv 82 (333)
T 5mdh_A 3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDV 82 (333)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSE
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcccCCEEEcCCcHHHhCCCCE
Confidence 37999999 79999999999998876 5 99999974 232 3344321 2234567788999999
Q ss_pred EEEeC
Q 018506 105 VITML 109 (355)
Q Consensus 105 Vi~~v 109 (355)
||++.
T Consensus 83 VvitA 87 (333)
T 5mdh_A 83 AILVG 87 (333)
T ss_dssp EEECC
T ss_pred EEEeC
Confidence 99985
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.007 Score=52.27 Aligned_cols=73 Identities=15% Similarity=0.132 Sum_probs=52.1
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh-HHHHHHhCC-CCC---CCCHHHHhhcCCEEEEeCCCchHHHHH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN-VMKMFSDMG-VPT---KETPFEVAEASDVVITMLPSSSHVLDV 118 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~-~~~~l~~~g-~~~---~~s~~e~~~~aDiVi~~v~~~~~~~~v 118 (355)
..++|-|||.|.+|..-++.|.+.|.+|++++++.. .++.+.+.+ +.. .-. .+.+.++|+||.++.++ .+...
T Consensus 30 ~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~l~~~~~i~~i~~~~~-~~dL~~adLVIaAT~d~-~~N~~ 107 (223)
T 3dfz_A 30 KGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAEINEWEAKGQLRVKRKKVG-EEDLLNVFFIVVATNDQ-AVNKF 107 (223)
T ss_dssp TTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHHHHHHHHTTSCEEECSCCC-GGGSSSCSEEEECCCCT-HHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHcCCcEEEECCCC-HhHhCCCCEEEECCCCH-HHHHH
Confidence 457899999999999999999999999999987643 355555433 221 112 23456899999888665 44433
|
| >1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1 | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0093 Score=54.87 Aligned_cols=70 Identities=16% Similarity=0.247 Sum_probs=46.8
Q ss_pred CceEEEEcccHHhHHHHHHHHHC-CCcEE-EEeC--ChhHHHHHHhC----C-C--------------------CCCCCH
Q 018506 45 FESVGFIGLGNMGFRMASNLMKA-GYKMA-VHDV--NCNVMKMFSDM----G-V--------------------PTKETP 95 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~-G~~V~-v~dr--~~~~~~~l~~~----g-~--------------------~~~~s~ 95 (355)
++||||+|+|.+|..+++.|.+. +.+|. +.|+ +++.+..+.+. | . ....++
T Consensus 3 ~ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~d~~~~~~~~a~l~~~ds~~g~~~~~~~~~~~~l~v~g~~i~v~~~~d~ 82 (335)
T 1u8f_O 3 KVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDP 82 (335)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSG
T ss_pred ceEEEEEccCHHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHhhcccccCCCCCceEEcCCeEEECCeEEEEEecCCH
Confidence 46999999999999999998875 45655 5564 66666555431 0 0 011245
Q ss_pred HHH-h--hcCCEEEEeCCCchH
Q 018506 96 FEV-A--EASDVVITMLPSSSH 114 (355)
Q Consensus 96 ~e~-~--~~aDiVi~~v~~~~~ 114 (355)
+++ . .++|+||.|+|....
T Consensus 83 ~~l~~~~~~vDvV~eatg~~~~ 104 (335)
T 1u8f_O 83 SKIKWGDAGAEYVVESTGVFTT 104 (335)
T ss_dssp GGCCTTTTTCCEEEECSSSCCS
T ss_pred HHCccccCCCCEEEECCCchhh
Confidence 554 1 478999999987644
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0046 Score=55.49 Aligned_cols=66 Identities=18% Similarity=0.116 Sum_probs=50.0
Q ss_pred CceEEEEcc-cHHhHHHHHHHHHCC-CcEEEEeCChhHH--HHHHhCCCCC-----C--CCHHHHhhcCCEEEEeCC
Q 018506 45 FESVGFIGL-GNMGFRMASNLMKAG-YKMAVHDVNCNVM--KMFSDMGVPT-----K--ETPFEVAEASDVVITMLP 110 (355)
Q Consensus 45 ~mkIgiIG~-G~mG~~ia~~L~~~G-~~V~v~dr~~~~~--~~l~~~g~~~-----~--~s~~e~~~~aDiVi~~v~ 110 (355)
+|+|.|.|+ |.+|+.+++.|.+.| ++|.+.+|++++. +.+...++.. . .+..++++.+|+||.+..
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~ 81 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIVTN 81 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEeCC
Confidence 478999987 999999999999998 9999999987764 3344444321 1 234456788999998874
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.00063 Score=62.80 Aligned_cols=91 Identities=12% Similarity=0.011 Sum_probs=52.5
Q ss_pred CCceEEEEc-ccHHhHHHHHHHHHCC---CcEEEEe-C-ChhHHHHHHhCCCCCCC-CHHHHhhcCCEEEEeCCCchHHH
Q 018506 44 QFESVGFIG-LGNMGFRMASNLMKAG---YKMAVHD-V-NCNVMKMFSDMGVPTKE-TPFEVAEASDVVITMLPSSSHVL 116 (355)
Q Consensus 44 ~~mkIgiIG-~G~mG~~ia~~L~~~G---~~V~v~d-r-~~~~~~~l~~~g~~~~~-s~~e~~~~aDiVi~~v~~~~~~~ 116 (355)
+++||+|+| .|.+|..+.+.|.+++ +++..++ + +..+.-.+....+.... ++ +..+++|+||.|+|.... .
T Consensus 2 ~~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~~~~~~~~i~~~~~~~-~~~~~vDvVf~a~g~~~s-~ 79 (336)
T 2r00_A 2 QQFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVEE-FDWSQVHIALFSAGGELS-A 79 (336)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCEEEETTEEEEEEEGGG-CCGGGCSEEEECSCHHHH-H
T ss_pred CccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCceeecCceeEEecCCh-HHhcCCCEEEECCCchHH-H
Confidence 468999999 9999999999999874 3555444 2 22110001111111111 12 234689999999986533 2
Q ss_pred HHhcCCCccccCCCCCCCeEEEEcCCCC
Q 018506 117 DVYNGPNGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 117 ~vl~~~~~~l~~~~~~~~~ivi~~st~~ 144 (355)
+.... +++ .|..+||.|+..
T Consensus 80 ~~a~~---~~~-----~G~~vId~s~~~ 99 (336)
T 2r00_A 80 KWAPI---AAE-----AGVVVIDNTSHF 99 (336)
T ss_dssp HHHHH---HHH-----TTCEEEECSSTT
T ss_pred HHHHH---HHH-----cCCEEEEcCCcc
Confidence 32221 232 345788887753
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0021 Score=60.10 Aligned_cols=35 Identities=34% Similarity=0.425 Sum_probs=32.5
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
.|||.|||+|..|..+|..|+++|++|++++|+++
T Consensus 1 sm~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~ 35 (412)
T 4hb9_A 1 SMHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSA 35 (412)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCS
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 38999999999999999999999999999998654
|
| >1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0018 Score=60.19 Aligned_cols=55 Identities=16% Similarity=0.231 Sum_probs=36.9
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCC----CcE-EEEeCChhHHHHHHhC--CCCCCCCHHHHhhc
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAG----YKM-AVHDVNCNVMKMFSDM--GVPTKETPFEVAEA 101 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G----~~V-~v~dr~~~~~~~l~~~--g~~~~~s~~e~~~~ 101 (355)
+++||||||+|.||+.++..|.+.. .+| .++|++.. .+.+. |+..+++..+++++
T Consensus 3 k~i~vgIiG~G~VG~~~~~~l~~~~~g~~~~vvaV~d~~~~---~~~~~~~gi~~~~~~~e~l~~ 64 (358)
T 1ebf_A 3 KVVNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAERS---LISKDFSPLNVGSDWKAALAA 64 (358)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSSBE---EECSSCSCCSCTTCHHHHHHT
T ss_pred ceEEEEEEecCHHHHHHHHHHHhcCCCCCEEEEEEEECChh---hhccccCCCCccccHHHHHhc
Confidence 4589999999999999999999863 344 45575432 22233 45444566666654
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0054 Score=54.05 Aligned_cols=34 Identities=32% Similarity=0.363 Sum_probs=30.5
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCCh
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNC 78 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~ 78 (355)
..+|.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 28 ~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~ 62 (251)
T 1zud_1 28 DSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDD 62 (251)
T ss_dssp TCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCB
T ss_pred cCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 4689999999999999999999997 689998764
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0026 Score=56.71 Aligned_cols=65 Identities=17% Similarity=0.208 Sum_probs=47.7
Q ss_pred ceEEEEcc-cHHhHHHHHHHHHC--CCcEEEEeCChhHHHHHHhCCCCC-----C--CCHHHHhhcCCEEEEeCC
Q 018506 46 ESVGFIGL-GNMGFRMASNLMKA--GYKMAVHDVNCNVMKMFSDMGVPT-----K--ETPFEVAEASDVVITMLP 110 (355)
Q Consensus 46 mkIgiIG~-G~mG~~ia~~L~~~--G~~V~v~dr~~~~~~~l~~~g~~~-----~--~s~~e~~~~aDiVi~~v~ 110 (355)
|+|.|.|+ |.+|+.++..|.+. ||+|++.+|++++.+.+...++.. . .+..++++.+|+||-+..
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~ 75 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQGVEVRHGDYNQPESLQKAFAGVSKLLFISG 75 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHhhcCCeEEEeccCCHHHHHHHHhcCCEEEEcCC
Confidence 57899986 99999999999998 999999999988776655443321 1 123445567787776653
|
| >3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0035 Score=57.63 Aligned_cols=69 Identities=19% Similarity=0.286 Sum_probs=48.8
Q ss_pred CCceEEEEcccHHhHHHHHHHHHC------C--CcE-EEEeCChhHHHH------HH----hCCCC-CCC---CHHHHh-
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKA------G--YKM-AVHDVNCNVMKM------FS----DMGVP-TKE---TPFEVA- 99 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~------G--~~V-~v~dr~~~~~~~------l~----~~g~~-~~~---s~~e~~- 99 (355)
+++||||||+|.||+.++..|.+. | .+| .++||++++.+. +. ..++. .++ +.++++
T Consensus 5 ~~irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ll~ 84 (331)
T 3c8m_A 5 KTINLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEKGSLDSLEYESISASEALA 84 (331)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHTTCGGGCCSEECCHHHHHH
T ss_pred cEEeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhccCCcccccCCCCCHHHHhC
Confidence 457899999999999999999874 2 454 577888765433 11 12221 344 788876
Q ss_pred hcCCEEEEeCCCc
Q 018506 100 EASDVVITMLPSS 112 (355)
Q Consensus 100 ~~aDiVi~~v~~~ 112 (355)
.+.|+|+.|+|..
T Consensus 85 ~~iDvVv~~t~~~ 97 (331)
T 3c8m_A 85 RDFDIVVDATPAS 97 (331)
T ss_dssp SSCSEEEECSCCC
T ss_pred CCCCEEEECCCCC
Confidence 3689999999984
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.016 Score=49.91 Aligned_cols=66 Identities=9% Similarity=0.048 Sum_probs=47.4
Q ss_pred eEEEE-cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 47 SVGFI-GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 47 kIgiI-G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
+|-|. |.|.+|.++++.|++.|++|++.+|++++.+.+.+.- -.....+..=+.+.+.++.++...
T Consensus 3 ~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~----------~~~~~~~~~D~~~~~~v~~~~~~~ 69 (230)
T 3guy_A 3 LIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCL----------SNNVGYRARDLASHQEVEQLFEQL 69 (230)
T ss_dssp CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTC----------SSCCCEEECCTTCHHHHHHHHHSC
T ss_pred EEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH----------hhccCeEeecCCCHHHHHHHHHHH
Confidence 35555 5689999999999999999999999999888776531 112333444456666777776654
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0016 Score=56.53 Aligned_cols=38 Identities=21% Similarity=0.289 Sum_probs=33.2
Q ss_pred CCceEEEEc-ccHHhHHHHHHHHHCCC--cEEEEeCChhHH
Q 018506 44 QFESVGFIG-LGNMGFRMASNLMKAGY--KMAVHDVNCNVM 81 (355)
Q Consensus 44 ~~mkIgiIG-~G~mG~~ia~~L~~~G~--~V~v~dr~~~~~ 81 (355)
..|+|.|.| .|.+|..+++.|++.|+ +|++.+|++++.
T Consensus 17 ~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~ 57 (242)
T 2bka_A 17 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTF 57 (242)
T ss_dssp TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCC
T ss_pred cCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCc
Confidence 447899998 69999999999999999 999999987643
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0014 Score=60.57 Aligned_cols=90 Identities=10% Similarity=0.042 Sum_probs=51.2
Q ss_pred CceEEEEc-ccHHhHHHHHHHHHCCCc---EEEE-eCC-hhHHHHHHhCCCCCCC-CHHHHhhcCCEEEEeCCCchHHHH
Q 018506 45 FESVGFIG-LGNMGFRMASNLMKAGYK---MAVH-DVN-CNVMKMFSDMGVPTKE-TPFEVAEASDVVITMLPSSSHVLD 117 (355)
Q Consensus 45 ~mkIgiIG-~G~mG~~ia~~L~~~G~~---V~v~-dr~-~~~~~~l~~~g~~~~~-s~~e~~~~aDiVi~~v~~~~~~~~ 117 (355)
+|||+|+| .|.+|..+.+.|.+++|+ +... +++ ..+.-.+....+...+ ++ +.++++|+||.|+|... ..+
T Consensus 6 ~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g~~~~~~g~~i~~~~~~~-~~~~~~DvV~~a~g~~~-s~~ 83 (340)
T 2hjs_A 6 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDS-FDFSSVGLAFFAAAAEV-SRA 83 (340)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGG-CCGGGCSEEEECSCHHH-HHH
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCccccCCcceEEecCCH-HHhcCCCEEEEcCCcHH-HHH
Confidence 47999999 799999999999977664 4444 432 2110001110111111 22 22568999999998643 233
Q ss_pred HhcCCCccccCCCCCCCeEEEEcCCCC
Q 018506 118 VYNGPNGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 118 vl~~~~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.... +++ .|..+||.|...
T Consensus 84 ~a~~---~~~-----aG~kvId~Sa~~ 102 (340)
T 2hjs_A 84 HAER---ARA-----AGCSVIDLSGAL 102 (340)
T ss_dssp HHHH---HHH-----TTCEEEETTCTT
T ss_pred HHHH---HHH-----CCCEEEEeCCCC
Confidence 2221 222 244678877654
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0039 Score=57.78 Aligned_cols=90 Identities=17% Similarity=0.232 Sum_probs=52.5
Q ss_pred CCceEEEEc-ccHHhHHHHHHHHHCC-CcEEEEe-CChhH---HHHHH-----------hCCCCCCC-CHHHHhhcCCEE
Q 018506 44 QFESVGFIG-LGNMGFRMASNLMKAG-YKMAVHD-VNCNV---MKMFS-----------DMGVPTKE-TPFEVAEASDVV 105 (355)
Q Consensus 44 ~~mkIgiIG-~G~mG~~ia~~L~~~G-~~V~v~d-r~~~~---~~~l~-----------~~g~~~~~-s~~e~~~~aDiV 105 (355)
+++||+|+| .|.+|..+.+.|.+.. .++.... .+... ..... .......+ ++++ ++++|+|
T Consensus 3 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~vDvV 81 (350)
T 2ep5_A 3 DKIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIVSTNYED-HKDVDVV 81 (350)
T ss_dssp CCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEECSSGGG-GTTCSEE
T ss_pred CCcEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChhhcCCCHHHhcCcccccccccCCceeEEeeCCHHH-hcCCCEE
Confidence 468999999 8999999999998754 3565553 22111 21110 00111211 3334 3789999
Q ss_pred EEeCCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCC
Q 018506 106 ITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 143 (355)
Q Consensus 106 i~~v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~ 143 (355)
|+|+|.... .+.... +++ .|..|||.|+.
T Consensus 82 f~atp~~~s-~~~a~~---~~~-----aG~~VId~s~~ 110 (350)
T 2ep5_A 82 LSALPNELA-ESIELE---LVK-----NGKIVVSNASP 110 (350)
T ss_dssp EECCCHHHH-HHHHHH---HHH-----TTCEEEECSST
T ss_pred EECCChHHH-HHHHHH---HHH-----CCCEEEECCcc
Confidence 999986533 232221 332 34568888865
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0026 Score=62.16 Aligned_cols=63 Identities=13% Similarity=0.088 Sum_probs=48.7
Q ss_pred CceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCC
Q 018506 45 FESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLP 110 (355)
Q Consensus 45 ~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~ 110 (355)
+|||.|.| .|.+|+.++..|.+.||+|++.+|++.+.+.+. ....+...++++.+|+||-+..
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~~~v~---~d~~~~~~~~l~~~D~Vih~A~ 210 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPGKRF---WDPLNPASDLLDGADVLVHLAG 210 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCTTCEE---CCTTSCCTTTTTTCSEEEECCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCcccee---ecccchhHHhcCCCCEEEECCC
Confidence 78999998 699999999999999999999999877543211 1222344566778999998754
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0078 Score=55.69 Aligned_cols=67 Identities=12% Similarity=0.166 Sum_probs=49.4
Q ss_pred CceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHH--HHHHhC-CC-----C-CC--CCHHHHhhcCCEEEEeCCC
Q 018506 45 FESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVM--KMFSDM-GV-----P-TK--ETPFEVAEASDVVITMLPS 111 (355)
Q Consensus 45 ~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~--~~l~~~-g~-----~-~~--~s~~e~~~~aDiVi~~v~~ 111 (355)
.|+|.|.| .|.+|+.+++.|++.||+|++.+|++++. +.+.+. ++ . .. .+..++++.+|+||.+...
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~~a~~ 83 (352)
T 1xgk_A 5 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTS 83 (352)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCS
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHHhcCCEEEEcCCC
Confidence 57899998 59999999999999999999999987764 444432 22 1 11 1245567889999977643
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0028 Score=57.91 Aligned_cols=42 Identities=19% Similarity=0.224 Sum_probs=35.2
Q ss_pred CCCCCCCceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhH
Q 018506 39 QVPSCQFESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNV 80 (355)
Q Consensus 39 ~~~~~~~mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~ 80 (355)
+......|+|.|.|+ |.+|+.++..|++.|++|++.+|+++.
T Consensus 14 ~~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~ 56 (330)
T 2pzm_A 14 LVPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATG 56 (330)
T ss_dssp CCSTTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSS
T ss_pred CcccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCcc
Confidence 334455689999986 999999999999999999999996543
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0095 Score=53.62 Aligned_cols=42 Identities=21% Similarity=0.348 Sum_probs=31.9
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFS 85 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~ 85 (355)
...||.|||+|.+|+.++..|+.+|. +++++|.+.-....++
T Consensus 35 ~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~ 77 (292)
T 3h8v_A 35 RTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMN 77 (292)
T ss_dssp GGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC------
T ss_pred hCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCccChhhcc
Confidence 45789999999999999999999996 6999998764333333
|
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
Probab=96.23 E-value=0.006 Score=59.31 Aligned_cols=65 Identities=23% Similarity=0.405 Sum_probs=49.6
Q ss_pred CCceEEEEcccHHhHH-HHHHHHHCCCcEEEEeCChh-HHHHHHhCCCCCCC-CHHHHhhcCCEEEEe
Q 018506 44 QFESVGFIGLGNMGFR-MASNLMKAGYKMAVHDVNCN-VMKMFSDMGVPTKE-TPFEVAEASDVVITM 108 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~-ia~~L~~~G~~V~v~dr~~~-~~~~l~~~g~~~~~-s~~e~~~~aDiVi~~ 108 (355)
..++|.|||.|..|.+ +|+.|.+.|++|+++|..+. ..+.+.+.|+.+.. ...+.+.++|+||+.
T Consensus 21 ~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~S 88 (494)
T 4hv4_A 21 RVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNSVTQHLTALGAQIYFHHRPENVLDASVVVVS 88 (494)
T ss_dssp -CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCEEESSCCGGGGTTCSEEEEC
T ss_pred cCCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHCCCEEECCCCHHHcCCCCEEEEC
Confidence 4578999999999985 99999999999999997543 45667777765432 122345689999987
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0042 Score=53.63 Aligned_cols=33 Identities=27% Similarity=0.415 Sum_probs=30.7
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCCh
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 78 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~ 78 (355)
..|.|||+|.-|...|..|+++|++|+++++++
T Consensus 3 ~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~ 35 (336)
T 3kkj_A 3 VPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSR 35 (336)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence 459999999999999999999999999999864
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0031 Score=57.93 Aligned_cols=67 Identities=10% Similarity=0.019 Sum_probs=44.5
Q ss_pred CCCCceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH--hCCCCCCCCHHHHhhcCCEEEEeC
Q 018506 42 SCQFESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS--DMGVPTKETPFEVAEASDVVITML 109 (355)
Q Consensus 42 ~~~~mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~--~~g~~~~~s~~e~~~~aDiVi~~v 109 (355)
..+.|+|.|.|+ |.+|+.++..|++.||+|++.+|+++. ..+. ...+.-..+..++++.+|+||-+.
T Consensus 16 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A 85 (347)
T 4id9_A 16 PRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG-TGGEEVVGSLEDGQALSDAIMGVSAVLHLG 85 (347)
T ss_dssp -----CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS-SCCSEEESCTTCHHHHHHHHTTCSEEEECC
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC-CCccEEecCcCCHHHHHHHHhCCCEEEECC
Confidence 456688999987 999999999999999999999998754 0000 001111123455677889998774
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0096 Score=54.62 Aligned_cols=67 Identities=15% Similarity=0.066 Sum_probs=47.6
Q ss_pred CCceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChh----HHHHHHh-------CCC-----CC--CCCHHHHhhcCCE
Q 018506 44 QFESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCN----VMKMFSD-------MGV-----PT--KETPFEVAEASDV 104 (355)
Q Consensus 44 ~~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~----~~~~l~~-------~g~-----~~--~~s~~e~~~~aDi 104 (355)
++|+|.|.| .|.+|+.++..|.+.||+|++.+|++. ..+.+.. .++ .. ..+..++++.+|+
T Consensus 24 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~ 103 (351)
T 3ruf_A 24 SPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGVDH 103 (351)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTCSE
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCCCE
Confidence 468999998 599999999999999999999999543 3333332 121 11 1234456678899
Q ss_pred EEEeCC
Q 018506 105 VITMLP 110 (355)
Q Consensus 105 Vi~~v~ 110 (355)
||-+..
T Consensus 104 Vih~A~ 109 (351)
T 3ruf_A 104 VLHQAA 109 (351)
T ss_dssp EEECCC
T ss_pred EEECCc
Confidence 988764
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.014 Score=51.80 Aligned_cols=40 Identities=13% Similarity=0.117 Sum_probs=34.2
Q ss_pred ceEEEE--cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH
Q 018506 46 ESVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 85 (355)
Q Consensus 46 mkIgiI--G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~ 85 (355)
.|+.+| |.|.+|.++++.|++.|++|++.+|++++.+.+.
T Consensus 28 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~ 69 (270)
T 3ftp_A 28 KQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIG 69 (270)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 456666 6789999999999999999999999988876654
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0042 Score=61.41 Aligned_cols=67 Identities=15% Similarity=0.069 Sum_probs=49.8
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh---CCCCCCCCHHHH-hhcCCEEEEeCCCc
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD---MGVPTKETPFEV-AEASDVVITMLPSS 112 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~---~g~~~~~s~~e~-~~~aDiVi~~v~~~ 112 (355)
++|.|+|.|.+|..+++.|.+.|++|++.|.++++++.+.. ....-...+.++ ++++|.+|++++++
T Consensus 349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~i~gD~t~~~~L~~agi~~ad~vi~~~~~d 419 (565)
T 4gx0_A 349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPVCNDHVVVYGDATVGQTLRQAGIDRASGIIVTTNDD 419 (565)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSSCEEESCSSSSTHHHHHTTTSCSEEEECCSCH
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHHHhhcCCEEEeCCCCHHHHHhcCccccCEEEEECCCc
Confidence 78999999999999999999999999999999988765431 001111122222 46788888888765
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0046 Score=56.51 Aligned_cols=42 Identities=21% Similarity=0.234 Sum_probs=32.2
Q ss_pred CCCCCCCCceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 38 SQVPSCQFESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 38 ~~~~~~~~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
.+.....+|+|.|.| .|.+|+.++..|++.|++|++.+|++.
T Consensus 14 ~~~~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 56 (333)
T 2q1w_A 14 LVPRGSHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFAT 56 (333)
T ss_dssp -------CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred eeeecCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCc
Confidence 345556778999997 699999999999999999999999754
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0075 Score=54.44 Aligned_cols=65 Identities=11% Similarity=0.162 Sum_probs=39.3
Q ss_pred CceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhc--CCEEEEeCC
Q 018506 45 FESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEA--SDVVITMLP 110 (355)
Q Consensus 45 ~mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~--aDiVi~~v~ 110 (355)
.|+|.|.|+ |.+|+.++..|++.||+|++.+|+++.-. .....+.-..+..++++. .|+||-+..
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~Dl~d~~~~~~~~~~~~~d~vih~A~ 69 (315)
T 2ydy_A 2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARPK-FEQVNLLDSNAVHHIIHDFQPHVIVHCAA 69 (315)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC-------------------CHHHHHHHCCSEEEECC-
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCCCC-eEEecCCCHHHHHHHHHhhCCCEEEECCc
Confidence 378999986 99999999999999999999998765411 111111112344455554 899998763
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0097 Score=52.47 Aligned_cols=42 Identities=12% Similarity=0.173 Sum_probs=34.5
Q ss_pred CCceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH
Q 018506 44 QFESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 85 (355)
Q Consensus 44 ~~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~ 85 (355)
..++|-|.| .|.+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 28 ~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 70 (262)
T 3rkr_A 28 SGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVE 70 (262)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 334555554 699999999999999999999999998876654
|
| >3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0095 Score=58.31 Aligned_cols=65 Identities=17% Similarity=0.136 Sum_probs=50.1
Q ss_pred CCceEEEEcccHHhHH-HHHHHHHCCCcEEEEeCCh--hHHHHHHhCCCCCC--CCHHHHhhcCCEEEEe
Q 018506 44 QFESVGFIGLGNMGFR-MASNLMKAGYKMAVHDVNC--NVMKMFSDMGVPTK--ETPFEVAEASDVVITM 108 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~-ia~~L~~~G~~V~v~dr~~--~~~~~l~~~g~~~~--~s~~e~~~~aDiVi~~ 108 (355)
+.++|-|||.|..|.+ +|+.|.+.|++|+++|.+. ...+.+.+.|+.+. .+.++...++|+||+.
T Consensus 18 ~~~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD~~~~~~~~~~L~~~gi~~~~G~~~~~~~~~~d~vV~S 87 (524)
T 3hn7_A 18 QGMHIHILGICGTFMGSLALLARALGHTVTGSDANIYPPMSTQLEQAGVTIEEGYLIAHLQPAPDLVVVG 87 (524)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCCTTHHHHHHHTTCEEEESCCGGGGCSCCSEEEEC
T ss_pred cCCEEEEEEecHhhHHHHHHHHHhCCCEEEEECCCCCcHHHHHHHHCCCEEECCCCHHHcCCCCCEEEEC
Confidence 4588999999999985 7888999999999999753 45567777777543 2444444579999986
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.014 Score=57.50 Aligned_cols=66 Identities=12% Similarity=0.126 Sum_probs=52.5
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC-CCCC----CCCHHHH----hhcCCEEEEeC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPT----KETPFEV----AEASDVVITML 109 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~-g~~~----~~s~~e~----~~~aDiVi~~v 109 (355)
..++|-|+|.|.+|..+++.|.+.|++|++.|.++++++.+.+. +... .++.+.+ ++++|.+|++.
T Consensus 126 ~~~hviI~G~g~~g~~la~~L~~~~~~vvvid~~~~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~a~~vi~t~ 200 (565)
T 4gx0_A 126 TRGHILIFGIDPITRTLIRKLESRNHLFVVVTDNYDQALHLEEQEGFKVVYGSPTDAHVLAGLRVAAARSIIANL 200 (565)
T ss_dssp CCSCEEEESCCHHHHHHHHHTTTTTCCEEEEESCHHHHHHHHHSCSSEEEESCTTCHHHHHHTTGGGCSEEEECS
T ss_pred cCCeEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCCeEEEeCCCCHHHHHhcCcccCCEEEEeC
Confidence 45789999999999999999999999999999999999998887 6432 1222221 36899998843
|
| >3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O | Back alignment and structure |
|---|
Probab=96.02 E-value=0.016 Score=53.36 Aligned_cols=40 Identities=20% Similarity=0.372 Sum_probs=28.9
Q ss_pred CceEEEEcccHHhHHHHHHHHHC-CCcEE-EEeC--ChhHHHHH
Q 018506 45 FESVGFIGLGNMGFRMASNLMKA-GYKMA-VHDV--NCNVMKMF 84 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~-G~~V~-v~dr--~~~~~~~l 84 (355)
++||||+|+|.+|..+++.|.+. +.+|. +.|+ +++....+
T Consensus 3 ~ikVgI~G~GrIGr~l~R~l~~~p~vevvaI~d~~~~~~~~~~l 46 (337)
T 3e5r_O 3 KIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYM 46 (337)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCSSEEEEEEECSSSCHHHHHHH
T ss_pred ceEEEEECcCHHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHh
Confidence 36999999999999999999876 44654 4453 45544444
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.02 E-value=0.012 Score=52.47 Aligned_cols=71 Identities=8% Similarity=-0.102 Sum_probs=37.3
Q ss_pred CcccccccccccccccccccccCCCCCCCCCceEEEE-cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH
Q 018506 15 SNLKSTVLLSSPFQSSAMRRFFSSQVPSCQFESVGFI-GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 85 (355)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkIgiI-G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~ 85 (355)
+|+.-.+++=..|.+..+..........+..++|-|. |.|.+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~ 85 (285)
T 2c07_A 14 SGHIEGRHMKLEFMNLLSENKKENYYYCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVV 85 (285)
T ss_dssp ---------------------CCCCCCCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHH
T ss_pred cCccccccccchhhccCCccccccccccCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH
Confidence 3444444444434443333333333333444567677 5789999999999999999999999988766543
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0053 Score=55.10 Aligned_cols=58 Identities=14% Similarity=0.085 Sum_probs=41.8
Q ss_pred ceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeC
Q 018506 46 ESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITML 109 (355)
Q Consensus 46 mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v 109 (355)
|||.|.|+ |.+|+.++..|.++||+|++..|+++..+ +.......+.++++|.||-+.
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~~~------~~~~~~~~~~l~~~d~vihla 59 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGPGR------ITWDELAASGLPSCDAAVNLA 59 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTE------EEHHHHHHHCCCSCSEEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCcCe------eecchhhHhhccCCCEEEEec
Confidence 89999986 99999999999999999999999865311 000011123346788877554
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0062 Score=54.07 Aligned_cols=64 Identities=13% Similarity=0.227 Sum_probs=46.2
Q ss_pred eEEEEcc-cHHhHHHHHHHHHC--CCcEEEEeCChhHHHHHHhCCCCC-----C--CCHHHHhhcCCEEEEeCC
Q 018506 47 SVGFIGL-GNMGFRMASNLMKA--GYKMAVHDVNCNVMKMFSDMGVPT-----K--ETPFEVAEASDVVITMLP 110 (355)
Q Consensus 47 kIgiIG~-G~mG~~ia~~L~~~--G~~V~v~dr~~~~~~~l~~~g~~~-----~--~s~~e~~~~aDiVi~~v~ 110 (355)
||.|.|+ |.+|+.++..|.+. |++|++.+|++++.+.+...++.. . .+..++++.+|+||-+..
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~ 74 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGITVRQADYGDEAALTSALQGVEKLLLISS 74 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECC-
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhhcCCCeEEEcCCCCHHHHHHHHhCCCEEEEeCC
Confidence 5788886 99999999999998 999999999988766555433221 1 123445567787776653
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.014 Score=53.67 Aligned_cols=68 Identities=15% Similarity=0.131 Sum_probs=47.9
Q ss_pred CCCceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChh----HHHHHHh-------CCC-----CCC--CCHHHHhhcCC
Q 018506 43 CQFESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCN----VMKMFSD-------MGV-----PTK--ETPFEVAEASD 103 (355)
Q Consensus 43 ~~~mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~----~~~~l~~-------~g~-----~~~--~s~~e~~~~aD 103 (355)
+.+|+|.|.|+ |.+|+.++..|++.|++|++.+|++. .++.+.+ .++ ... .+..++++.+|
T Consensus 25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d 104 (352)
T 1sb8_A 25 AQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGVD 104 (352)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTCS
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCCC
Confidence 45689999987 99999999999999999999998653 3333321 121 111 23445667889
Q ss_pred EEEEeCC
Q 018506 104 VVITMLP 110 (355)
Q Consensus 104 iVi~~v~ 110 (355)
+||-+..
T Consensus 105 ~vih~A~ 111 (352)
T 1sb8_A 105 YVLHQAA 111 (352)
T ss_dssp EEEECCS
T ss_pred EEEECCc
Confidence 8888764
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.017 Score=53.21 Aligned_cols=67 Identities=13% Similarity=0.127 Sum_probs=49.7
Q ss_pred CCceEEEEc-ccHHhHHHHHHHHHC-CC-cEEEEeCChhHHHHHHh----CCC-----CCC--CCHHHHhhcCCEEEEeC
Q 018506 44 QFESVGFIG-LGNMGFRMASNLMKA-GY-KMAVHDVNCNVMKMFSD----MGV-----PTK--ETPFEVAEASDVVITML 109 (355)
Q Consensus 44 ~~mkIgiIG-~G~mG~~ia~~L~~~-G~-~V~v~dr~~~~~~~l~~----~g~-----~~~--~s~~e~~~~aDiVi~~v 109 (355)
+.|+|.|.| .|.+|+.+++.|++. |+ +|++++|++++.+.+.+ .++ ... .+..++++..|+||-+.
T Consensus 20 ~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~Vih~A 99 (344)
T 2gn4_A 20 DNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRDLERLNYALEGVDICIHAA 99 (344)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECCTTCHHHHHHHTTTCSEEEECC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhcCCEEEECC
Confidence 347899997 699999999999999 97 99999999887765543 121 111 23445667899999886
Q ss_pred C
Q 018506 110 P 110 (355)
Q Consensus 110 ~ 110 (355)
.
T Consensus 100 a 100 (344)
T 2gn4_A 100 A 100 (344)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0019 Score=60.19 Aligned_cols=91 Identities=16% Similarity=0.164 Sum_probs=52.2
Q ss_pred CceEEEEc-ccHHhHHHHHHHHHCCCc---EEEEe-C-ChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHH
Q 018506 45 FESVGFIG-LGNMGFRMASNLMKAGYK---MAVHD-V-NCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDV 118 (355)
Q Consensus 45 ~mkIgiIG-~G~mG~~ia~~L~~~G~~---V~v~d-r-~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~v 118 (355)
++||+||| .|..|.-|.+.|.+.+|+ +.... + +..+.-.+......+.....+.++++|+||.|+|... .++.
T Consensus 2 ~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~saG~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~-s~~~ 80 (366)
T 3pwk_A 2 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAFEGVDIALFSAGSST-SAKY 80 (366)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTTTCEEEETTEEEEEEECCTTTTTTCSEEEECSCHHH-HHHH
T ss_pred CcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccCCCcceecCCCceEeeCCHHHhcCCCEEEECCChHh-HHHH
Confidence 47999999 899999999999998774 33332 2 2111100110001111101123568999999998653 3333
Q ss_pred hcCCCccccCCCCCCCeEEEEcCCCC
Q 018506 119 YNGPNGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 119 l~~~~~~l~~~~~~~~~ivi~~st~~ 144 (355)
... +++ .|..+||.|+..
T Consensus 81 a~~---~~~-----~G~~vIDlSa~~ 98 (366)
T 3pwk_A 81 APY---AVK-----AGVVVVDNTSYF 98 (366)
T ss_dssp HHH---HHH-----TTCEEEECSSTT
T ss_pred HHH---HHH-----CCCEEEEcCCcc
Confidence 321 232 346889998853
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0087 Score=55.70 Aligned_cols=65 Identities=17% Similarity=0.218 Sum_probs=45.5
Q ss_pred CceEEEEc-ccHHhHHHHHHHHHCCC-----cEEEEeCChh----HH----HHHHhCC------CCCCCCHHHHhhcCCE
Q 018506 45 FESVGFIG-LGNMGFRMASNLMKAGY-----KMAVHDVNCN----VM----KMFSDMG------VPTKETPFEVAEASDV 104 (355)
Q Consensus 45 ~mkIgiIG-~G~mG~~ia~~L~~~G~-----~V~v~dr~~~----~~----~~l~~~g------~~~~~s~~e~~~~aDi 104 (355)
.+||+||| +|.+|.+++-.|+..+. ++.+++.+.+ ++ ..+.+.. ....++..++++++|+
T Consensus 32 ~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i~~~~y~~~~daDv 111 (375)
T 7mdh_A 32 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDW 111 (375)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred CCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEEecCCHHHhCCCCE
Confidence 47999999 79999999999998764 2766544322 22 2333221 2234567888999999
Q ss_pred EEEeC
Q 018506 105 VITML 109 (355)
Q Consensus 105 Vi~~v 109 (355)
||++-
T Consensus 112 VVita 116 (375)
T 7mdh_A 112 ALLIG 116 (375)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 99985
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0093 Score=55.38 Aligned_cols=91 Identities=16% Similarity=0.216 Sum_probs=53.6
Q ss_pred CCceEEEEc-ccHHhHHHHHHHHHCCC-cEE-EEeCCh--hHHHHHHh-----------CCCCCCC-CHHHHhhcCCEEE
Q 018506 44 QFESVGFIG-LGNMGFRMASNLMKAGY-KMA-VHDVNC--NVMKMFSD-----------MGVPTKE-TPFEVAEASDVVI 106 (355)
Q Consensus 44 ~~mkIgiIG-~G~mG~~ia~~L~~~G~-~V~-v~dr~~--~~~~~l~~-----------~g~~~~~-s~~e~~~~aDiVi 106 (355)
+++|||||| .|..|.-|.+.|.+.-+ ++. +..++. .++..... ....+.. +. +.+.++|+||
T Consensus 6 ~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~-~~~~~vDvvf 84 (359)
T 4dpk_A 6 RTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDP-KLMDDVDIIF 84 (359)
T ss_dssp CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECCG-GGCTTCCEEE
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccccceEEeCCH-HHhcCCCEEE
Confidence 357899999 69999999998876532 444 334432 22332100 0122211 23 3346899999
Q ss_pred EeCCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCC
Q 018506 107 TMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 107 ~~v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~ 144 (355)
+|+|...+ ++.... +++ .|..+||.|+..
T Consensus 85 ~a~p~~~s-~~~a~~---~~~-----~G~~vIDlSa~~ 113 (359)
T 4dpk_A 85 SPLPQGAA-GPVEEQ---FAK-----EGFPVISNSPDH 113 (359)
T ss_dssp ECCCTTTH-HHHHHH---HHH-----TTCEEEECSSTT
T ss_pred ECCChHHH-HHHHHH---HHH-----CCCEEEEcCCCc
Confidence 99998643 333221 232 356889988764
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0093 Score=55.38 Aligned_cols=91 Identities=16% Similarity=0.216 Sum_probs=53.7
Q ss_pred CCceEEEEc-ccHHhHHHHHHHHHCCC-cEE-EEeCCh--hHHHHHHh-----------CCCCCCC-CHHHHhhcCCEEE
Q 018506 44 QFESVGFIG-LGNMGFRMASNLMKAGY-KMA-VHDVNC--NVMKMFSD-----------MGVPTKE-TPFEVAEASDVVI 106 (355)
Q Consensus 44 ~~mkIgiIG-~G~mG~~ia~~L~~~G~-~V~-v~dr~~--~~~~~l~~-----------~g~~~~~-s~~e~~~~aDiVi 106 (355)
+++|||||| .|..|.-|.+.|.+.-+ ++. +..++. .++..... ....+.. +. +.+.++|+||
T Consensus 6 ~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~-~~~~~vDvvf 84 (359)
T 4dpl_A 6 RTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDP-KLMDDVDIIF 84 (359)
T ss_dssp CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECCG-GGCTTCCEEE
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccccceEEeCCH-HHhcCCCEEE
Confidence 357899999 69999999998876532 444 334432 22332100 0122211 23 3346899999
Q ss_pred EeCCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCC
Q 018506 107 TMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 107 ~~v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~ 144 (355)
+|+|...+ ++.... +++ .|..+||.|+..
T Consensus 85 ~a~p~~~s-~~~a~~---~~~-----~G~~vIDlSa~~ 113 (359)
T 4dpl_A 85 SPLPQGAA-GPVEEQ---FAK-----EGFPVISNSPDH 113 (359)
T ss_dssp ECCCTTTH-HHHHHH---HHH-----TTCEEEECSSTT
T ss_pred ECCChHHH-HHHHHH---HHH-----CCCEEEEcCCCc
Confidence 99998643 333221 232 356889998864
|
| >3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0066 Score=57.09 Aligned_cols=37 Identities=22% Similarity=0.174 Sum_probs=32.7
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
.+.++|.|||+|..|..+|..|+++|++|+++++++.
T Consensus 21 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~ 57 (407)
T 3rp8_A 21 QGHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKE 57 (407)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 4457899999999999999999999999999998764
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.015 Score=51.04 Aligned_cols=42 Identities=17% Similarity=0.262 Sum_probs=36.2
Q ss_pred ceEEEE--cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC
Q 018506 46 ESVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM 87 (355)
Q Consensus 46 mkIgiI--G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~ 87 (355)
.|..+| |.+.+|.++|+.|++.|++|.+.+|++++.+++.+.
T Consensus 2 nK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~ 45 (247)
T 3ged_A 2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKE 45 (247)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTT
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh
Confidence 466666 688899999999999999999999999888877654
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=95.88 E-value=0.033 Score=48.69 Aligned_cols=40 Identities=10% Similarity=0.099 Sum_probs=33.1
Q ss_pred ceEEEE-cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH
Q 018506 46 ESVGFI-GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 85 (355)
Q Consensus 46 mkIgiI-G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~ 85 (355)
+++-|. |.|.+|.++++.|++.|++|++.+|++++.+.+.
T Consensus 13 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~ 53 (252)
T 3f1l_A 13 RIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVA 53 (252)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 344455 5689999999999999999999999998876654
|
| >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0038 Score=58.43 Aligned_cols=93 Identities=16% Similarity=0.185 Sum_probs=53.7
Q ss_pred CCCceEEEEc-ccHHhHHHHHHHHHCCC-cEE-EE-eC-Chh-HHHHHHh-----------CCCCCCC-CHHHHhhcCCE
Q 018506 43 CQFESVGFIG-LGNMGFRMASNLMKAGY-KMA-VH-DV-NCN-VMKMFSD-----------MGVPTKE-TPFEVAEASDV 104 (355)
Q Consensus 43 ~~~mkIgiIG-~G~mG~~ia~~L~~~G~-~V~-v~-dr-~~~-~~~~l~~-----------~g~~~~~-s~~e~~~~aDi 104 (355)
|+++|||||| .|..|.-|.+.|.+..+ ++. ++ .+ +.. ++..... ....+.. +..+.++++|+
T Consensus 17 M~~~kVaIvGAtG~vG~ell~lL~~hp~~el~~l~aS~~saGk~~~~~~~~~~~~~~p~~~~~~~v~~~~~~~~~~~~Dv 96 (381)
T 3hsk_A 17 MSVKKAGVLGATGSVGQRFILLLSKHPEFEIHALGASSRSAGKKYKDAASWKQTETLPETEQDIVVQECKPEGNFLECDV 96 (381)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHCCCCCSSCCCHHHHTCBCEESSSCTTGGGCSE
T ss_pred CCccEEEEECCCChHHHHHHHHHHcCCCceEEEeeccccccCCCHHHhcccccccccccccccceEEeCchhhhcccCCE
Confidence 4668999999 79999999998887542 453 43 23 222 2221110 0111111 12214578999
Q ss_pred EEEeCCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCC
Q 018506 105 VITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 105 Vi~~v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~ 144 (355)
||+|+|.. ..++.... +++ .+..|||.|+..
T Consensus 97 vf~alp~~-~s~~~~~~---~~~-----~G~~VIDlSa~f 127 (381)
T 3hsk_A 97 VFSGLDAD-VAGDIEKS---FVE-----AGLAVVSNAKNY 127 (381)
T ss_dssp EEECCCHH-HHHHHHHH---HHH-----TTCEEEECCSTT
T ss_pred EEECCChh-HHHHHHHH---HHh-----CCCEEEEcCCcc
Confidence 99999975 33333322 222 356889998864
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.029 Score=52.30 Aligned_cols=75 Identities=20% Similarity=0.247 Sum_probs=53.6
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHhCCCCCC-------CCHHHHhh-----cCCEEEEeCCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVPTK-------ETPFEVAE-----ASDVVITMLPS 111 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~~-------~s~~e~~~-----~aDiVi~~v~~ 111 (355)
-.+|.|+|+|.+|...++.+...|. +|++.++++++.+.+++.|+..+ .+..+.+. ..|+||-++..
T Consensus 194 g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid~~g~ 273 (378)
T 3uko_A 194 GSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFECIGN 273 (378)
T ss_dssp TCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCC
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCCCEEEECCCC
Confidence 3679999999999999999988998 79999999999998887776432 12222221 35666666665
Q ss_pred chHHHHHh
Q 018506 112 SSHVLDVY 119 (355)
Q Consensus 112 ~~~~~~vl 119 (355)
+..++..+
T Consensus 274 ~~~~~~~~ 281 (378)
T 3uko_A 274 VSVMRAAL 281 (378)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.013 Score=51.59 Aligned_cols=68 Identities=7% Similarity=0.055 Sum_probs=47.6
Q ss_pred ceEEEE--cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEe--CCCchHHHHHhcC
Q 018506 46 ESVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITM--LPSSSHVLDVYNG 121 (355)
Q Consensus 46 mkIgiI--G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~--v~~~~~~~~vl~~ 121 (355)
-|+++| |.+.+|.++|+.|++.|..|.+++|++++++++.+. ..+. ..+++.+. +.++++++.++..
T Consensus 7 gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~-------i~~~--g~~~~~~~~Dvt~~~~v~~~~~~ 77 (254)
T 4fn4_A 7 NKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQE-------LRGM--GKEVLGVKADVSKKKDVEEFVRR 77 (254)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHT--TCCEEEEECCTTSHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHH-------HHhc--CCcEEEEEccCCCHHHHHHHHHH
Confidence 467787 778899999999999999999999999888766531 1111 22333333 5566677766654
Q ss_pred C
Q 018506 122 P 122 (355)
Q Consensus 122 ~ 122 (355)
.
T Consensus 78 ~ 78 (254)
T 4fn4_A 78 T 78 (254)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.045 Score=48.92 Aligned_cols=53 Identities=13% Similarity=0.142 Sum_probs=41.1
Q ss_pred cccCCCCCCCCCceEEEE-cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 34 RFFSSQVPSCQFESVGFI-GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 34 ~~~~~~~~~~~~mkIgiI-G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
.|...+++..+.++|-|. |.|.+|.++++.|++.|++|++.+|++++.+.+.+
T Consensus 5 ~~~~~~~~~l~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~ 58 (291)
T 3rd5_A 5 GWTAADLPSFAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAAR 58 (291)
T ss_dssp CCCGGGCCCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHT
T ss_pred CCChhhccCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 344444544554556666 56899999999999999999999999998877654
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.011 Score=55.20 Aligned_cols=97 Identities=16% Similarity=0.120 Sum_probs=65.2
Q ss_pred CCCCCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCCh-------hHHHHHH----h--CCCCCCCCHHHHhhcCCEEE
Q 018506 41 PSCQFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNC-------NVMKMFS----D--MGVPTKETPFEVAEASDVVI 106 (355)
Q Consensus 41 ~~~~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~-------~~~~~l~----~--~g~~~~~s~~e~~~~aDiVi 106 (355)
......||.|+|+|..|.++++.+...|. +|+++|++- +++..++ . .......++.|+++.+|++|
T Consensus 184 ~~l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~~~~~~~L~eav~~ADV~I 263 (398)
T 2a9f_A 184 KSLDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDALEGADIFI 263 (398)
T ss_dssp CCTTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTCCCSCCC---CHHHHHSCTTCCCSCSHHHHTTCSEE
T ss_pred CCCCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcccCCccccchHHHHHHhhccCcccchhhHHHHhccCCEEE
Confidence 34566899999999999999999999998 899999873 2122211 1 11122457999999999877
Q ss_pred EeCCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHH
Q 018506 107 TMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ 146 (355)
Q Consensus 107 ~~v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~ 146 (355)
=+.....-.++++..+ . ++.+|+.+|+-.|+
T Consensus 264 G~Sapgl~T~EmVk~M-------a--~~pIIfalsNPt~E 294 (398)
T 2a9f_A 264 GVSAPGVLKAEWISKM-------A--ARPVIFAMANPIPE 294 (398)
T ss_dssp ECCSTTCCCHHHHHTS-------C--SSCEEEECCSSSCS
T ss_pred ecCCCCCCCHHHHHhh-------C--CCCEEEECCCCCcc
Confidence 5543122233444332 2 45699999997764
|
| >1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.016 Score=56.01 Aligned_cols=64 Identities=25% Similarity=0.497 Sum_probs=49.0
Q ss_pred CCceEEEEcccHHhHH-HHHHHHHCCCcEEEEeCChhH-HHHHHhCCCCCC--CCHHHHhhcCCEEEEe
Q 018506 44 QFESVGFIGLGNMGFR-MASNLMKAGYKMAVHDVNCNV-MKMFSDMGVPTK--ETPFEVAEASDVVITM 108 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~-ia~~L~~~G~~V~v~dr~~~~-~~~l~~~g~~~~--~s~~e~~~~aDiVi~~ 108 (355)
..++|.|||+|..|.+ +|+.|.+.|++|.++|..... .+.+.+.|+... .+. +.++.+|+||+.
T Consensus 17 ~~~~i~viG~G~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~g~~~-~~~~~a~~vv~s 84 (475)
T 1p3d_A 17 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYIGHAE-EHIEGASVVVVS 84 (475)
T ss_dssp TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEEEESCCG-GGGTTCSEEEEC
T ss_pred cCCEEEEEeecHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHhCCCEEECCCCH-HHcCCCCEEEEC
Confidence 4578999999999997 999999999999999975543 456666776543 223 345689998886
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=95.76 E-value=0.02 Score=52.09 Aligned_cols=64 Identities=17% Similarity=0.271 Sum_probs=47.5
Q ss_pred ceEEEEcc-cHHhHHHHHHHHHC-CCcEEEEeCChhHHHHHHhC-CC-----CCCC---CHHHHhhcCCEEEEeC
Q 018506 46 ESVGFIGL-GNMGFRMASNLMKA-GYKMAVHDVNCNVMKMFSDM-GV-----PTKE---TPFEVAEASDVVITML 109 (355)
Q Consensus 46 mkIgiIG~-G~mG~~ia~~L~~~-G~~V~v~dr~~~~~~~l~~~-g~-----~~~~---s~~e~~~~aDiVi~~v 109 (355)
|+|.|.|+ |.+|+.++..|.+. ||+|++.+|++++.+.+... ++ ...+ ...++++.+|+||-+.
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~d~vih~A 75 (345)
T 2bll_A 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLV 75 (345)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECB
T ss_pred CeEEEECCCcHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhcCCCeEEEeccccCcHHHHHhhccCCCEEEEcc
Confidence 68999986 99999999999998 89999999988776544321 21 2222 2445667899999764
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.016 Score=51.32 Aligned_cols=41 Identities=22% Similarity=0.260 Sum_probs=33.7
Q ss_pred ceEEEE--cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 46 ESVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 46 mkIgiI--G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
.|+.+| |.|.+|.++++.|++.|++|++.+|++++.+.+.+
T Consensus 4 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~ 46 (264)
T 3tfo_A 4 DKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIAT 46 (264)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 355555 56899999999999999999999999988776543
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.017 Score=51.36 Aligned_cols=40 Identities=15% Similarity=0.241 Sum_probs=33.2
Q ss_pred ceEEEE-cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH
Q 018506 46 ESVGFI-GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 85 (355)
Q Consensus 46 mkIgiI-G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~ 85 (355)
+++-|. |.|.+|.++++.|++.|++|++.+|++++.+.+.
T Consensus 33 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~ 73 (276)
T 3r1i_A 33 KRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVA 73 (276)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 445555 5689999999999999999999999988776654
|
| >2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.017 Score=55.95 Aligned_cols=64 Identities=25% Similarity=0.516 Sum_probs=48.9
Q ss_pred CCceEEEEcccHHhHH-HHHHHHHCCCcEEEEeCChh-HHHHHHhCCCCCC--CCHHHHhhcCCEEEEe
Q 018506 44 QFESVGFIGLGNMGFR-MASNLMKAGYKMAVHDVNCN-VMKMFSDMGVPTK--ETPFEVAEASDVVITM 108 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~-ia~~L~~~G~~V~v~dr~~~-~~~~l~~~g~~~~--~s~~e~~~~aDiVi~~ 108 (355)
..++|.|||+|..|.+ +|+.|.+.|++|.++|.... ..+.+.+.|+.+. .+. +.++.+|+||+.
T Consensus 18 ~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~g~~~-~~~~~a~~vv~s 85 (491)
T 2f00_A 18 RVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNPVTQQLMNLGATIYFNHRP-ENVRDASVVVVS 85 (491)
T ss_dssp TCCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCEEESSCCG-GGGTTCSEEEEC
T ss_pred cCCEEEEEEcCHHHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHCCCEEECCCCH-HHcCCCCEEEEC
Confidence 4578999999999997 99999999999999997543 3456666776543 223 345689999886
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.021 Score=50.82 Aligned_cols=53 Identities=15% Similarity=0.184 Sum_probs=34.9
Q ss_pred cccCCCCCCCCCceEEEEcc-cH--HhHHHHHHHHHCCCcEEEEeCCh--hHHHHHHh
Q 018506 34 RFFSSQVPSCQFESVGFIGL-GN--MGFRMASNLMKAGYKMAVHDVNC--NVMKMFSD 86 (355)
Q Consensus 34 ~~~~~~~~~~~~mkIgiIG~-G~--mG~~ia~~L~~~G~~V~v~dr~~--~~~~~l~~ 86 (355)
.+....|...+.++|-|.|+ |. +|.++++.|++.|++|++.+|+. +.++.+.+
T Consensus 15 ~~~~~~M~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~l~~ 72 (280)
T 3nrc_A 15 VPRGSHMGFLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQFKDRVEKLCA 72 (280)
T ss_dssp -------CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHG
T ss_pred CCCCCcccccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCchHHHHHHHHHH
Confidence 33344444444456666675 55 99999999999999999999987 55555543
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.71 E-value=0.02 Score=50.53 Aligned_cols=41 Identities=10% Similarity=0.080 Sum_probs=33.5
Q ss_pred ceEEEE-cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 46 ESVGFI-GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 46 mkIgiI-G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
+++-|. |.|.+|.++++.|++.|++|++.+|++++.+.+.+
T Consensus 12 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~ 53 (264)
T 3ucx_A 12 KVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAK 53 (264)
T ss_dssp CEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred cEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHH
Confidence 344455 56789999999999999999999999988776543
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=95.68 E-value=0.046 Score=50.39 Aligned_cols=89 Identities=19% Similarity=0.197 Sum_probs=56.7
Q ss_pred CCceEEEEc-ccHHhHHHHHHHHHCCC-cEEEEe-C-Chh-HHHH----HHhCCCCCC-CCHHHHhhcCCEEEEeCCCch
Q 018506 44 QFESVGFIG-LGNMGFRMASNLMKAGY-KMAVHD-V-NCN-VMKM----FSDMGVPTK-ETPFEVAEASDVVITMLPSSS 113 (355)
Q Consensus 44 ~~mkIgiIG-~G~mG~~ia~~L~~~G~-~V~v~d-r-~~~-~~~~----l~~~g~~~~-~s~~e~~~~aDiVi~~v~~~~ 113 (355)
-|.|||||| .|..|.-|.+.|.+..+ ++.... + +.. ++.. +. ....+. .+.++..+++|++|+|+|..
T Consensus 12 ~~~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S~~~aG~~~~~~~p~~~-~~l~~~~~~~~~~~~~~Dvvf~alp~~- 89 (351)
T 1vkn_A 12 HMIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTL-ENSILSEFDPEKVSKNCDVLFTALPAG- 89 (351)
T ss_dssp CCEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGC-CCCBCBCCCHHHHHHHCSEEEECCSTT-
T ss_pred ceeEEEEECCCCHHHHHHHHHHHcCCCcEEEEEeCcccccCChHHhChhhc-cCceEEeCCHHHhhcCCCEEEECCCcH-
Confidence 467999995 79999999999998743 455443 2 211 2221 21 222222 24555557899999999986
Q ss_pred HHHHHhcCCCccccCCCCCCCeEEEEcCCCC
Q 018506 114 HVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 114 ~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~ 144 (355)
..++..... .+..|||.|+..
T Consensus 90 ~s~~~~~~~----------~g~~VIDlSsdf 110 (351)
T 1vkn_A 90 ASYDLVREL----------KGVKIIDLGADF 110 (351)
T ss_dssp HHHHHHTTC----------CSCEEEESSSTT
T ss_pred HHHHHHHHh----------CCCEEEECChhh
Confidence 444444332 245899999865
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.027 Score=51.83 Aligned_cols=45 Identities=18% Similarity=0.156 Sum_probs=39.6
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHhCCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGV 89 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~~g~ 89 (355)
-.+|.|+|+|.+|...++.+...|. +|++.++++++.+.+.+.|+
T Consensus 168 g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga 213 (348)
T 2d8a_A 168 GKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGA 213 (348)
T ss_dssp TCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTC
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC
Confidence 3579999999999999999999999 89999999998887776554
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.014 Score=53.89 Aligned_cols=76 Identities=22% Similarity=0.304 Sum_probs=56.8
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCC-CCHHHHhhcCCEEEEeCCCchHHHHHhc
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK-ETPFEVAEASDVVITMLPSSSHVLDVYN 120 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~-~s~~e~~~~aDiVi~~v~~~~~~~~vl~ 120 (355)
-.+|.|+|+|.+|...++.+...|.+|++.++++++.+.+.+.|+... .+.+++.+..|+||-++..+..++..+.
T Consensus 177 g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~D~vid~~g~~~~~~~~~~ 253 (348)
T 3two_A 177 GTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFYTDPKQCKEELDFIISTIPTHYDLKDYLK 253 (348)
T ss_dssp TCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCSEEESSGGGCCSCEEEEEECCCSCCCHHHHHT
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCeecCCHHHHhcCCCEEEECCCcHHHHHHHHH
Confidence 468999999999999999999999999999999999998888775422 2333333357788877766545555443
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.015 Score=51.83 Aligned_cols=40 Identities=13% Similarity=0.167 Sum_probs=33.2
Q ss_pred ceEEEE--cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH
Q 018506 46 ESVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 85 (355)
Q Consensus 46 mkIgiI--G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~ 85 (355)
.|+.+| |.|.+|.++++.|++.|++|++.+|++++.+.+.
T Consensus 24 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~ 65 (279)
T 3sju_A 24 PQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAV 65 (279)
T ss_dssp -CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 455555 5789999999999999999999999998876654
|
| >3h2z_A Mannitol-1-phosphate 5-dehydrogenase; PSI- protein structure initiative, structural genomics, midwest for structural genomics (MCSG); 1.90A {Shigella flexneri 2a str} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.021 Score=53.32 Aligned_cols=73 Identities=21% Similarity=0.266 Sum_probs=54.4
Q ss_pred ceEEEEcccHHhHH-HHHHHHHCCCcEEEEeCChhHHHHHHhCC------------------CCCC----CCHHHHhhcC
Q 018506 46 ESVGFIGLGNMGFR-MASNLMKAGYKMAVHDVNCNVMKMFSDMG------------------VPTK----ETPFEVAEAS 102 (355)
Q Consensus 46 mkIgiIG~G~mG~~-ia~~L~~~G~~V~v~dr~~~~~~~l~~~g------------------~~~~----~s~~e~~~~a 102 (355)
||+-.+|+|++|++ ++..|.++|++|+..|++.+.++.+++.+ +... ...-+++.++
T Consensus 1 mkavhfGaGniGRGfig~~l~~~g~~v~f~dv~~~~i~~Ln~~~~Y~V~~~g~~~~~~~v~~v~ai~s~~~~~~~~i~~a 80 (382)
T 3h2z_A 1 MKALHFGAGNIGRGFIGKLLADAGIQLTFADVNQVVLDALNARHSYQVHVVGETEQVDTVSGVNAVSSIGDDVVDLIAQV 80 (382)
T ss_dssp CEEEEECCSHHHHHTHHHHHHHTTCEEEEEESCHHHHHHHHHHSEEEEEEESSSEEEEEEESCEEEETTSSHHHHHHTTC
T ss_pred CcEEEECCCccchhhHHHHHHHcCCeEEEEeCCHHHHHHHhcCCCEEEEEccCCcceEEEEEEEEEeCcHHHHHHHHcCC
Confidence 78999999999955 55567789999999999999999998642 1111 1244467799
Q ss_pred CEEEEeCCCchHHHHHh
Q 018506 103 DVVITMLPSSSHVLDVY 119 (355)
Q Consensus 103 DiVi~~v~~~~~~~~vl 119 (355)
|+|.+++. +..++.+.
T Consensus 81 dlitT~vG-~~~l~~i~ 96 (382)
T 3h2z_A 81 DLVTTAVG-PVVLERIA 96 (382)
T ss_dssp SEEEECCC-HHHHHHTH
T ss_pred CEEEECCC-cccHHHHH
Confidence 99988885 45555544
|
| >2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.016 Score=55.16 Aligned_cols=93 Identities=15% Similarity=0.181 Sum_probs=61.7
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC---cEEEEe----CC----hh-H---HHH----HHhC-CCC-CCCCHHHHhhcC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY---KMAVHD----VN----CN-V---MKM----FSDM-GVP-TKETPFEVAEAS 102 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~---~V~v~d----r~----~~-~---~~~----l~~~-g~~-~~~s~~e~~~~a 102 (355)
...||.|+|+|.+|.+++..|.+.|. +|+++| |+ .+ . +.. +... +.. ...++.++++.+
T Consensus 185 ~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~a~~~~~~~~~~~L~e~l~~a 264 (439)
T 2dvm_A 185 SEITLALFGAGAAGFATLRILTEAGVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEALKDA 264 (439)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHHHTTSCTTCCCSSHHHHHTTC
T ss_pred cCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEEccCCCcCccccccchhHHHHHHHHHhhccccccccccHHHHhccC
Confidence 44689999999999999999999997 799999 87 32 2 211 1111 111 245688899999
Q ss_pred CEEEEeCCC--chHHHHHhcCCCccccCCCCCCCeEEEEcCCCCH
Q 018506 103 DVVITMLPS--SSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDP 145 (355)
Q Consensus 103 DiVi~~v~~--~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~ 145 (355)
|++|-+++. ...-+..+. .+. ++.+|+|+++-.+
T Consensus 265 DVlInaT~~~~G~~~~e~v~----~m~-----~~~iVfDLynP~~ 300 (439)
T 2dvm_A 265 DVLISFTRPGPGVIKPQWIE----KMN-----EDAIVFPLANPVP 300 (439)
T ss_dssp SEEEECSCCCSSSSCHHHHT----TSC-----TTCEEEECCSSSC
T ss_pred CEEEEcCCCccCCCChHHHH----hcC-----CCCEEEECCCCCC
Confidence 999999886 211122222 121 3459999955443
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.054 Score=50.40 Aligned_cols=46 Identities=20% Similarity=0.293 Sum_probs=40.5
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHhCCCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVP 90 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~ 90 (355)
-.+|.|+|+|.+|...++.+...|. +|++.++++++.+.+++.|+.
T Consensus 196 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~ 242 (376)
T 1e3i_A 196 GSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGAT 242 (376)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCc
Confidence 3579999999999999999988998 799999999999888877764
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* | Back alignment and structure |
|---|
Probab=95.56 E-value=0.014 Score=52.81 Aligned_cols=60 Identities=15% Similarity=0.093 Sum_probs=44.4
Q ss_pred CCceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhh--cCCEEEEeCC
Q 018506 44 QFESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAE--ASDVVITMLP 110 (355)
Q Consensus 44 ~~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~--~aDiVi~~v~ 110 (355)
..|+|.|.| .|.+|+.++..|.+.||+|++.+|+.. ..+.-..+..++++ .+|+||-+..
T Consensus 2 ~~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~~-------~D~~d~~~~~~~~~~~~~d~vih~a~ 64 (321)
T 1e6u_A 2 AKQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDE-------LNLLDSRAVHDFFASERIDQVYLAAA 64 (321)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTT-------CCTTCHHHHHHHHHHHCCSEEEECCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCcc-------CCccCHHHHHHHHHhcCCCEEEEcCe
Confidence 357899998 599999999999999999999887631 11111223445666 8999998753
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.55 E-value=0.037 Score=49.07 Aligned_cols=43 Identities=14% Similarity=0.154 Sum_probs=35.1
Q ss_pred CCCceEEEE-cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH
Q 018506 43 CQFESVGFI-GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 85 (355)
Q Consensus 43 ~~~mkIgiI-G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~ 85 (355)
+..++|-|. |.|.+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 30 l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 73 (279)
T 1xg5_A 30 WRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELA 73 (279)
T ss_dssp GTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHHHHH
Confidence 344556666 6799999999999999999999999988776543
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.035 Score=50.55 Aligned_cols=66 Identities=20% Similarity=0.245 Sum_probs=45.1
Q ss_pred CCceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHH---HHHHhC------------CCCCCCCHHHHhhcCCEEEE
Q 018506 44 QFESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVM---KMFSDM------------GVPTKETPFEVAEASDVVIT 107 (355)
Q Consensus 44 ~~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~---~~l~~~------------g~~~~~s~~e~~~~aDiVi~ 107 (355)
++++|.|.| +|.+|+.++..|++.||+|++..|+++.. ..+.+. .+.-..+..++++.+|+||-
T Consensus 4 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih 83 (337)
T 2c29_D 4 QSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIKGCTGVFH 83 (337)
T ss_dssp --CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCTTCHHHHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHTTCSEEEE
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEECCcchhHHHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHcCCCEEEE
Confidence 346788887 89999999999999999999988887632 222110 11222345566777888776
Q ss_pred eC
Q 018506 108 ML 109 (355)
Q Consensus 108 ~v 109 (355)
+.
T Consensus 84 ~A 85 (337)
T 2c29_D 84 VA 85 (337)
T ss_dssp CC
T ss_pred ec
Confidence 53
|
| >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.01 Score=56.73 Aligned_cols=65 Identities=22% Similarity=0.206 Sum_probs=48.3
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHH--HHHHhCCCCCC--CCHHHHhhcCCEEEEeC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVM--KMFSDMGVPTK--ETPFEVAEASDVVITML 109 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~--~~l~~~g~~~~--~s~~e~~~~aDiVi~~v 109 (355)
+.+||.|||+|..|.+.|+.|.+.||+|+++|...... ..+. .|+.+. ....+.++.+|.||++.
T Consensus 4 ~~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~~~l~-~G~~~~~g~~~~~~~~~~d~vV~s~ 72 (439)
T 2x5o_A 4 QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLP-EAVERHTGSLNDEWLMAADLIVASP 72 (439)
T ss_dssp TTCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTTGGGSC-TTSCEEESSCCHHHHHTCSEEEECT
T ss_pred CCCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcchhHHhh-CCCEEEECCCcHHHhccCCEEEeCC
Confidence 34789999999999999999999999999999754321 3344 566542 22355666899999873
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.048 Score=50.65 Aligned_cols=75 Identities=15% Similarity=0.203 Sum_probs=52.9
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHhCCCCCCC-------CHHHHhh-----cCCEEEEeCCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVPTKE-------TPFEVAE-----ASDVVITMLPS 111 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~~~-------s~~e~~~-----~aDiVi~~v~~ 111 (355)
-.+|.|+|+|.+|...++.+...|. +|++.++++++.+.+++.|+..+- +..+.+. ..|+||-++..
T Consensus 192 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~Dvvid~~g~ 271 (373)
T 1p0f_A 192 GSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAGR 271 (373)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCC
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECCCC
Confidence 3579999999999999998888898 799999999999888887764221 2222221 35777766655
Q ss_pred chHHHHHh
Q 018506 112 SSHVLDVY 119 (355)
Q Consensus 112 ~~~~~~vl 119 (355)
+..++..+
T Consensus 272 ~~~~~~~~ 279 (373)
T 1p0f_A 272 IETMMNAL 279 (373)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 43444433
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.036 Score=49.19 Aligned_cols=82 Identities=12% Similarity=0.182 Sum_probs=52.3
Q ss_pred eEEEE--cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEE--eCCCchHHHHHhcCC
Q 018506 47 SVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT--MLPSSSHVLDVYNGP 122 (355)
Q Consensus 47 kIgiI--G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~--~v~~~~~~~~vl~~~ 122 (355)
|+.+| |.|.+|.++++.|++.|++|++.+|++++.+.+.+. +-...++.++ =+.++.+++.++...
T Consensus 22 k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~~~~~~----------~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 91 (272)
T 2nwq_A 22 STLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGE----------LSAKTRVLPLTLDVRDRAAMSAAVDNL 91 (272)
T ss_dssp CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----------HTTTSCEEEEECCTTCHHHHHHHHHTC
T ss_pred cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH----------hhcCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 55555 678999999999999999999999998887665431 0000223332 255666777777664
Q ss_pred CccccCCCCCCCeEEEEcCCC
Q 018506 123 NGLLQGGNSVRPQLLIDSSTI 143 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~ 143 (355)
...+.. + .++|+....
T Consensus 92 ~~~~g~---i--D~lvnnAG~ 107 (272)
T 2nwq_A 92 PEEFAT---L--RGLINNAGL 107 (272)
T ss_dssp CGGGSS---C--CEEEECCCC
T ss_pred HHHhCC---C--CEEEECCCC
Confidence 332211 1 367766543
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
Probab=95.51 E-value=0.011 Score=54.71 Aligned_cols=52 Identities=12% Similarity=0.145 Sum_probs=41.4
Q ss_pred ceEEEEc-ccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeC
Q 018506 46 ESVGFIG-LGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITML 109 (355)
Q Consensus 46 mkIgiIG-~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v 109 (355)
|||.|.| .|.+|+.++..|.+.|+ +|+..||+.+ ..+..++++++|+||-+.
T Consensus 1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~~d------------~~~l~~~~~~~d~Vih~a 54 (369)
T 3st7_A 1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQTK------------EEELESALLKADFIVHLA 54 (369)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCCEEEECCTTCC------------HHHHHHHHHHCSEEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEECCCCC------------HHHHHHHhccCCEEEECC
Confidence 7899998 79999999999999999 9999999411 123345556789998775
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.50 E-value=0.016 Score=52.88 Aligned_cols=37 Identities=24% Similarity=0.376 Sum_probs=32.3
Q ss_pred CCceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhH
Q 018506 44 QFESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNV 80 (355)
Q Consensus 44 ~~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~ 80 (355)
..|+|-|.| .|.+|+.++..|++.|++|++.+|+++.
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~ 41 (341)
T 3enk_A 4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNS 41 (341)
T ss_dssp SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSS
T ss_pred CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcc
Confidence 347899997 6999999999999999999999987654
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=95.48 E-value=0.11 Score=50.17 Aligned_cols=128 Identities=9% Similarity=0.130 Sum_probs=83.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHhcC-CCcccccCCCCCCCcccCCCC--CCCC
Q 018506 221 GNGAAAKICNNLTMAVSMLGVSEALTLGQS------LGISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGVPA--SRNY 291 (355)
Q Consensus 221 g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~------~Gi~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~--~~~~ 291 (355)
+.++.+|++.|.+.+..+.+.+|.+.+.++ .++|..++.++.+.|+ -.+|..+.. ...+...+. +--+
T Consensus 317 ~~~~~~~~v~~al~~~~~~~yaqGf~ll~~a~~~~~~~l~~~~ia~~wr~Gciirs~~l~~i---~~a~~~~~~l~~l~~ 393 (474)
T 2iz1_A 317 DKKEVIEKIRKALYFSKIMSYAQGFAQLRKASEEFDWDLPYGTIAQIWRAGCIIRAEFLQNI---TDAFDKDSELENLLL 393 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTSSSCTTCBTTHHHH---HHHHHHCTTCCCGGG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccchHHHHHHHHH---HHHHhcCCChhhhhc
Confidence 778999999999999999999999999766 7899999999998776 355544310 000111000 0001
Q ss_pred CCCcc--hhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHHHHHHHhcCC
Q 018506 292 GGGFA--SKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGK 352 (355)
Q Consensus 292 ~~~~~--~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~~~ 352 (355)
++-|. +.......+.++..|-+.|+|+|.+.++...|..-....... -.-...|-+|++|
T Consensus 394 ~~~~~~~~~~~~~~~r~~v~~a~~~~~p~p~~s~al~~~~~~~~~~~~~-~l~qa~rd~fg~h 455 (474)
T 2iz1_A 394 DDYFVDITKRYQEAVRDVVSLAVQAGTPIPTFTSAISYYDSYRSENLPA-NLIQAQRDYFGAH 455 (474)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTCSSCTH-HHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCchh-hHHHHHHHhcCCc
Confidence 11121 233345578899999999999999999999655443333222 3333334455554
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.011 Score=53.20 Aligned_cols=37 Identities=22% Similarity=0.329 Sum_probs=33.0
Q ss_pred ceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHH
Q 018506 46 ESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMK 82 (355)
Q Consensus 46 mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~ 82 (355)
|||.|.|+ |.+|+.++..|++.||+|++.+|+++...
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~ 38 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRR 38 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSCCG
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCch
Confidence 68999987 99999999999999999999999776543
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.47 E-value=0.028 Score=51.21 Aligned_cols=33 Identities=24% Similarity=0.325 Sum_probs=29.7
Q ss_pred CceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCC
Q 018506 45 FESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVN 77 (355)
Q Consensus 45 ~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~ 77 (355)
||+|.|.| .|.+|+.++..|++.|++|++.+|+
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~ 34 (347)
T 1orr_A 1 MAKLLITGGCGFLGSNLASFALSQGIDLIVFDNL 34 (347)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CcEEEEeCCCchhHHHHHHHHHhCCCEEEEEeCC
Confidence 57899997 6999999999999999999999874
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=95.45 E-value=0.042 Score=50.40 Aligned_cols=45 Identities=18% Similarity=0.340 Sum_probs=40.3
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGV 89 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~ 89 (355)
..+|.|+|+|.+|...++.+...|.+|++.++++++.+.+.+.|+
T Consensus 165 g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa 209 (339)
T 1rjw_A 165 GEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGA 209 (339)
T ss_dssp TCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTC
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCC
Confidence 468999999999999999999999999999999999888777664
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.013 Score=53.32 Aligned_cols=37 Identities=22% Similarity=0.278 Sum_probs=32.6
Q ss_pred CCceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhH
Q 018506 44 QFESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNV 80 (355)
Q Consensus 44 ~~mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~ 80 (355)
+.|+|.|.|+ |.+|+.++..|++.||+|++.+|++++
T Consensus 2 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~ 39 (345)
T 2z1m_A 2 SGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGE 39 (345)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCST
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcc
Confidence 3478999986 999999999999999999999998754
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=95.43 E-value=0.018 Score=52.38 Aligned_cols=65 Identities=11% Similarity=0.112 Sum_probs=46.1
Q ss_pred CceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHH------HHHHh-CC-------CCCCCCHHHHhhcCCEEEEeC
Q 018506 45 FESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVM------KMFSD-MG-------VPTKETPFEVAEASDVVITML 109 (355)
Q Consensus 45 ~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~------~~l~~-~g-------~~~~~s~~e~~~~aDiVi~~v 109 (355)
.|+|.|.| +|.+|+.++..|++.||+|.+..|+++.. ..+.. .+ +.-..+..++++.+|+||-+.
T Consensus 9 ~~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~A 88 (338)
T 2rh8_A 9 KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGDLKIFRADLTDELSFEAPIAGCDFVFHVA 88 (338)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHTTCEEEEEESCTTCTTTTHHHHHHGGGSCEEEEECCTTTSSSSHHHHTTCSEEEEES
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCcchhhhHHHHHhcCCCCcEEEEecCCCChHHHHHHHcCCCEEEEeC
Confidence 47899998 79999999999999999999888876532 12211 11 122234566777889888654
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.13 Score=49.75 Aligned_cols=128 Identities=12% Similarity=0.141 Sum_probs=83.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHhcC-CCcccccCCCCCCCcccCCCC--CCCC
Q 018506 221 GNGAAAKICNNLTMAVSMLGVSEALTLGQS------LGISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGVPA--SRNY 291 (355)
Q Consensus 221 g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~------~Gi~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~--~~~~ 291 (355)
+.+..+|++.|.+.+..+.+.+|.+.+.++ .++|..++.++.+.|+ -.+|..+.. ...+...+. +--+
T Consensus 322 ~~~~~~~~v~~al~~~~i~syaqGf~ll~~as~~~~w~l~~~~ia~iwr~GciIrs~~l~~i---~~a~~~~~~l~~l~~ 398 (497)
T 2p4q_A 322 DREQFVDDLEQALYASKIISYAQGFMLIREAAATYGWKLNNPAIALMWRGGCIIRSVFLGQI---TKAYREEPDLENLLF 398 (497)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHSSSTTCBHHHHHH---HHHHHHCTTCSCGGG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCchHHHHHHHH---HHHHhcCCChhhhhc
Confidence 478999999999999999999999999776 7899999999999876 355544310 000111000 0001
Q ss_pred CCCcc--hhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHHHHHHHhcCC
Q 018506 292 GGGFA--SKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGK 352 (355)
Q Consensus 292 ~~~~~--~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~~~ 352 (355)
++-|. +.......+.++..|-+.|+|+|.+.++...|..-....... -.-...|-+|++|
T Consensus 399 ~~~f~~~~~~~~~~~r~~v~~a~~~gvp~P~~s~aL~~~~~~~~~~~~a-~liqa~Rd~FG~H 460 (497)
T 2p4q_A 399 NKFFADAVTKAQSGWRKSIALATTYGIPTPAFSTALSFYDGYRSERLPA-NLLQAQRDYFGAH 460 (497)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTCSSCTH-HHHHHHHHHHSCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCchh-HHHHHHHHhcCCc
Confidence 11121 233344578899999999999999999999655443333322 3333334466554
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.38 E-value=0.064 Score=49.80 Aligned_cols=46 Identities=20% Similarity=0.306 Sum_probs=40.5
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHhCCCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVP 90 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~ 90 (355)
-.+|.|+|+|.+|...++.+...|. +|++.++++++.+.+++.|+.
T Consensus 193 g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~ 239 (374)
T 1cdo_A 193 GSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGAT 239 (374)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCC
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCc
Confidence 3579999999999999999988998 799999999999888877754
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=95.38 E-value=0.016 Score=51.10 Aligned_cols=40 Identities=18% Similarity=0.383 Sum_probs=35.5
Q ss_pred ceEEEE--cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH
Q 018506 46 ESVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 85 (355)
Q Consensus 46 mkIgiI--G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~ 85 (355)
-|+++| |.+.+|.++|+.|++.|.+|.+.+|+++++++..
T Consensus 9 gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~ 50 (255)
T 4g81_D 9 GKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESV 50 (255)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 478888 8889999999999999999999999998876654
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=95.38 E-value=0.037 Score=48.90 Aligned_cols=40 Identities=15% Similarity=0.216 Sum_probs=33.3
Q ss_pred ceEEEE-cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH
Q 018506 46 ESVGFI-GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 85 (355)
Q Consensus 46 mkIgiI-G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~ 85 (355)
+++-|. |.|.+|.++++.|++.|+.|.+.+|++++.+.+.
T Consensus 28 k~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~ 68 (266)
T 3grp_A 28 RKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIA 68 (266)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 344444 6789999999999999999999999998877654
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=95.36 E-value=0.051 Score=50.49 Aligned_cols=46 Identities=20% Similarity=0.335 Sum_probs=40.3
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHhCCCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVP 90 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~ 90 (355)
-.+|.|+|+|.+|...++.+...|. +|++.++++++.+.+++.|+.
T Consensus 192 g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~ 238 (374)
T 2jhf_A 192 GSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGAT 238 (374)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCc
Confidence 3579999999999999999988998 799999999999888877754
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.011 Score=54.91 Aligned_cols=68 Identities=18% Similarity=0.178 Sum_probs=45.8
Q ss_pred CCCceEEEEcc-cHHhHHHHHHHHHCC-CcEEEEeCChhHHH-HHH-hCCC-----CCC--CCHHHHhhcCCEEEEeCC
Q 018506 43 CQFESVGFIGL-GNMGFRMASNLMKAG-YKMAVHDVNCNVMK-MFS-DMGV-----PTK--ETPFEVAEASDVVITMLP 110 (355)
Q Consensus 43 ~~~mkIgiIG~-G~mG~~ia~~L~~~G-~~V~v~dr~~~~~~-~l~-~~g~-----~~~--~s~~e~~~~aDiVi~~v~ 110 (355)
..+|+|.|.|+ |.+|+.++..|++.| ++|++.+|+++... .+. ..++ ... .+..++++.+|+||-+..
T Consensus 30 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~l~~~~~v~~~~~Dl~d~~~l~~~~~~~d~Vih~A~ 108 (377)
T 2q1s_A 30 LANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVPDHPAVRFSETSITDDALLASLQDEYDYVFHLAT 108 (377)
T ss_dssp GTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGGGSCCCTTEEEECSCTTCHHHHHHCCSCCSEEEECCC
T ss_pred hCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchhhccCCCceEEEECCCCCHHHHHHHhhCCCEEEECCC
Confidence 45689999985 999999999999999 99999999765421 111 1111 111 123344557888887753
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.35 E-value=0.044 Score=48.41 Aligned_cols=43 Identities=19% Similarity=0.084 Sum_probs=35.2
Q ss_pred CCCceEEEE-cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH
Q 018506 43 CQFESVGFI-GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 85 (355)
Q Consensus 43 ~~~mkIgiI-G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~ 85 (355)
+..++|-|. |.|.+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 29 l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~ 72 (272)
T 1yb1_A 29 VTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETA 72 (272)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHH
Confidence 344567777 5789999999999999999999999988766543
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=95.35 E-value=0.025 Score=50.20 Aligned_cols=41 Identities=17% Similarity=0.294 Sum_probs=34.4
Q ss_pred ceEEEE--cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 46 ESVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 46 mkIgiI--G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
.|+.+| |.|.+|.++++.|++.|++|++.+|++++.+.+.+
T Consensus 28 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~ 70 (272)
T 4dyv_A 28 KKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAA 70 (272)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 455555 56899999999999999999999999988776653
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.0092 Score=55.61 Aligned_cols=91 Identities=18% Similarity=0.245 Sum_probs=51.5
Q ss_pred CceEEEEc-ccHHhHHHHH-HHHHCCCc---EEEEe-CChhH-HHHHHhCCCCCC--CCHHHHhhcCCEEEEeCCCchHH
Q 018506 45 FESVGFIG-LGNMGFRMAS-NLMKAGYK---MAVHD-VNCNV-MKMFSDMGVPTK--ETPFEVAEASDVVITMLPSSSHV 115 (355)
Q Consensus 45 ~mkIgiIG-~G~mG~~ia~-~L~~~G~~---V~v~d-r~~~~-~~~l~~~g~~~~--~s~~e~~~~aDiVi~~v~~~~~~ 115 (355)
|+||+|+| .|.+|..+.+ .|.+.+++ +..+. ++..+ +..+....+... .++++ .+++|+||.|+|.. ..
T Consensus 1 m~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~s~G~~v~~~~g~~i~~~~~~~~~~-~~~~DvVf~a~g~~-~s 78 (367)
T 1t4b_A 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEA-LKALDIIVTCQGGD-YT 78 (367)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHH-HHTCSEEEECSCHH-HH
T ss_pred CcEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeCCCCCCccccCCCceEEEecCChHH-hcCCCEEEECCCch-hH
Confidence 57999999 9999999999 55555543 33333 22221 111221222222 23444 47899999999864 33
Q ss_pred HHHhcCCCccccCCCCCCCeEEEEcCCC
Q 018506 116 LDVYNGPNGLLQGGNSVRPQLLIDSSTI 143 (355)
Q Consensus 116 ~~vl~~~~~~l~~~~~~~~~ivi~~st~ 143 (355)
++.... +++.+ ...+|||.|+.
T Consensus 79 ~~~a~~---~~~~G---~k~vVID~ss~ 100 (367)
T 1t4b_A 79 NEIYPK---LRESG---WQGYWIDAASS 100 (367)
T ss_dssp HHHHHH---HHHTT---CCCEEEECSST
T ss_pred HHHHHH---HHHCC---CCEEEEcCChh
Confidence 333322 23211 11389998875
|
| >2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* | Back alignment and structure |
|---|
Probab=95.34 E-value=0.016 Score=54.37 Aligned_cols=36 Identities=28% Similarity=0.429 Sum_probs=32.6
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
..++|.|||.|..|..+|..|++.|++|+++++++.
T Consensus 25 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 60 (398)
T 2xdo_A 25 SDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDND 60 (398)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSS
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 346899999999999999999999999999998754
|
| >3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.032 Score=51.49 Aligned_cols=33 Identities=15% Similarity=0.258 Sum_probs=25.3
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHC-CCcEEEEe
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKA-GYKMAVHD 75 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~-G~~V~v~d 75 (355)
+.|+||||+|.|.+|.-+.+.|.+. ..+|...+
T Consensus 15 ~~~ikVgI~G~G~iGr~llR~l~~~p~veivain 48 (354)
T 3cps_A 15 YFQGTLGINGFGRIGRLVLRACMERNDITVVAIN 48 (354)
T ss_dssp ---CEEEEECCSHHHHHHHHHHHTCSSCEEEEEE
T ss_pred CcceEEEEECCCHHHHHHHHHHHcCCCeEEEEec
Confidence 3567999999999999999999876 46765443
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=95.32 E-value=0.016 Score=52.99 Aligned_cols=34 Identities=18% Similarity=0.273 Sum_probs=30.8
Q ss_pred CceEEEEc-ccHHhHHHHHHHHHC--CCcEEEEeCCh
Q 018506 45 FESVGFIG-LGNMGFRMASNLMKA--GYKMAVHDVNC 78 (355)
Q Consensus 45 ~mkIgiIG-~G~mG~~ia~~L~~~--G~~V~v~dr~~ 78 (355)
||+|.|.| .|.+|+.++..|++. |++|++.+|++
T Consensus 4 m~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~ 40 (348)
T 1oc2_A 4 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLT 40 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCC
T ss_pred CcEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 57899997 699999999999998 89999999864
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.054 Score=47.13 Aligned_cols=41 Identities=20% Similarity=0.260 Sum_probs=33.9
Q ss_pred ceEEEE-cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 46 ESVGFI-GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 46 mkIgiI-G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
+++-|. |.|.+|..+++.|++.|++|++.+|++++.+.+.+
T Consensus 10 k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 51 (253)
T 3qiv_A 10 KVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAK 51 (253)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence 345555 56899999999999999999999999988776543
|
| >2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A* | Back alignment and structure |
|---|
Probab=95.29 E-value=0.0096 Score=55.65 Aligned_cols=85 Identities=22% Similarity=0.225 Sum_probs=56.3
Q ss_pred CceEEEEcc-cHHhHHHHHHHHHCCC---cEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhc
Q 018506 45 FESVGFIGL-GNMGFRMASNLMKAGY---KMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYN 120 (355)
Q Consensus 45 ~mkIgiIG~-G~mG~~ia~~L~~~G~---~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~ 120 (355)
..||.|||. |..|..-+..+...|. +|++||+++.. .|... +.+..+|+||-|+.-......++.
T Consensus 214 ~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~------~g~~~-----~~i~~aDivIn~vlig~~aP~Lvt 282 (394)
T 2qrj_A 214 KPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETS------RGGPF-----DEIPQADIFINCIYLSKPIAPFTN 282 (394)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHT------TCSCC-----THHHHSSEEEECCCCCSSCCCSCC
T ss_pred CCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeeccccc------cCCch-----hhHhhCCEEEECcCcCCCCCcccC
Confidence 468999999 9999999999999998 89999987622 13322 345699999999863211001111
Q ss_pred CCCccccCCCCCCCeEEEEcCCC
Q 018506 121 GPNGLLQGGNSVRPQLLIDSSTI 143 (355)
Q Consensus 121 ~~~~~l~~~~~~~~~ivi~~st~ 143 (355)
.+.++.+ ..++.+|||.+--
T Consensus 283 --~e~v~~m-~k~gsVIVDVA~D 302 (394)
T 2qrj_A 283 --MEKLNNP-NRRLRTVVDVSAD 302 (394)
T ss_dssp --HHHHCCT-TCCCCEEEETTCC
T ss_pred --HHHHhcC-cCCCeEEEEEecC
Confidence 1122222 1256799998753
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=95.29 E-value=0.0082 Score=54.55 Aligned_cols=65 Identities=17% Similarity=0.214 Sum_probs=44.0
Q ss_pred CceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHH-HHHhCCC-----CCC--CCHHHHhh--cCCEEEEeCC
Q 018506 45 FESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMK-MFSDMGV-----PTK--ETPFEVAE--ASDVVITMLP 110 (355)
Q Consensus 45 ~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~-~l~~~g~-----~~~--~s~~e~~~--~aDiVi~~v~ 110 (355)
||+|.|.| .|.+|+.++..|++.||+|++.+|++.... .+. .++ ... .+..++++ .+|+||-+..
T Consensus 1 M~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~d~vih~a~ 76 (330)
T 2c20_A 1 MNSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDAIT-EGAKFYNGDLRDKAFLRDVFTQENIEAVMHFAA 76 (330)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSC-TTSEEEECCTTCHHHHHHHHHHSCEEEEEECCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCcCchhhcC-CCcEEEECCCCCHHHHHHHHhhcCCCEEEECCc
Confidence 57899996 599999999999999999999998654321 111 111 111 12344555 7888887753
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=95.28 E-value=0.022 Score=52.28 Aligned_cols=35 Identities=23% Similarity=0.368 Sum_probs=31.3
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCCh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNC 78 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~ 78 (355)
...||.|||+|..|+.++..|+..|. +++++|++.
T Consensus 33 ~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~ 68 (340)
T 3rui_A 33 KNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT 68 (340)
T ss_dssp HTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred hCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCE
Confidence 35789999999999999999999996 689998865
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=95.28 E-value=0.014 Score=53.75 Aligned_cols=67 Identities=16% Similarity=0.158 Sum_probs=46.3
Q ss_pred CCceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh-----CCC-----CCC--CCHHHHhhc--CCEEEEe
Q 018506 44 QFESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----MGV-----PTK--ETPFEVAEA--SDVVITM 108 (355)
Q Consensus 44 ~~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~-----~g~-----~~~--~s~~e~~~~--aDiVi~~ 108 (355)
..|+|.|.| .|.+|+.++..|.+.||+|++.+|++++.+.+.+ .++ ... .+..++++. .|+||-+
T Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~ 87 (357)
T 1rkx_A 8 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVFHM 87 (357)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCcccchhhHhhccCCceEEEEccccCHHHHHHHHHhcCCCEEEEC
Confidence 457899997 6999999999999999999999998765432221 111 111 123344544 7999887
Q ss_pred CC
Q 018506 109 LP 110 (355)
Q Consensus 109 v~ 110 (355)
..
T Consensus 88 A~ 89 (357)
T 1rkx_A 88 AA 89 (357)
T ss_dssp CS
T ss_pred CC
Confidence 64
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.27 E-value=0.03 Score=49.87 Aligned_cols=41 Identities=12% Similarity=0.263 Sum_probs=36.0
Q ss_pred ceEEEE--cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 46 ESVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 46 mkIgiI--G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
-|+++| |.+.+|.++|+.|++.|.+|.+.+|+.+++++..+
T Consensus 29 gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~ 71 (273)
T 4fgs_A 29 AKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIA 71 (273)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 478888 67789999999999999999999999998876643
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.099 Score=50.44 Aligned_cols=128 Identities=12% Similarity=0.128 Sum_probs=83.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHhcC-CCcccccCCCCCCCcccCCCC--CCCC
Q 018506 221 GNGAAAKICNNLTMAVSMLGVSEALTLGQS------LGISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGVPA--SRNY 291 (355)
Q Consensus 221 g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~------~Gi~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~--~~~~ 291 (355)
+.+..+|++.|.+.+..+.+.+|.+.+.++ .++|..++.++.+.|+ -.+|..+.. ...+...+. +--+
T Consensus 325 ~~~~~~~~v~~al~~~~~~syaqGf~ll~~as~~~~w~l~~~~ia~iwr~GciIrs~~l~~i---~~a~~~~~~l~~l~~ 401 (480)
T 2zyd_A 325 DKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYGEIAKIFRAGCIIRAQFLQKI---TDACAENPQIANLLL 401 (480)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTSSSSTTCBTHHHHH---HHHHHHCTTCSCGGG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCcchHHHHHHHH---HHHHhcCCChHhhhc
Confidence 778999999999999999999999999776 7899999999999776 355544310 000111000 0001
Q ss_pred CCCcc--hhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHHHHHHHhcCC
Q 018506 292 GGGFA--SKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGK 352 (355)
Q Consensus 292 ~~~~~--~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~~~ 352 (355)
++-|. +.......+.++..|-+.|+|+|.+.++...|..-....... -.-...|-+|+++
T Consensus 402 ~~~f~~~~~~~~~~~r~~v~~a~~~gvp~p~~s~al~~~~~~~~~~~~~-~l~qa~Rd~FG~H 463 (480)
T 2zyd_A 402 APYFKQIADDYQQALRDVVAYAVQNGIPVPTFSAAVAYYDSYRAAVLPA-NLIQAQRDYFGAH 463 (480)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTCSSCTH-HHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCchh-hHHHHHHHhcCCC
Confidence 11121 233344578899999999999999999999866544443332 2223334455554
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=95.25 E-value=0.035 Score=48.28 Aligned_cols=42 Identities=19% Similarity=0.251 Sum_probs=34.4
Q ss_pred CCceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH
Q 018506 44 QFESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 85 (355)
Q Consensus 44 ~~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~ 85 (355)
..++|-|.| .|.+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 10 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 52 (255)
T 1fmc_A 10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVV 52 (255)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHH
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 335676665 599999999999999999999999988766543
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=95.24 E-value=0.058 Score=47.15 Aligned_cols=43 Identities=19% Similarity=0.146 Sum_probs=35.7
Q ss_pred CCceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 44 QFESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 44 ~~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
+.++|-|.| .|.+|..+++.|++.|++|++.+|++++.+.+.+
T Consensus 4 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 47 (254)
T 1hdc_A 4 SGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAR 47 (254)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 335666775 5899999999999999999999999888776654
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=95.23 E-value=0.038 Score=51.12 Aligned_cols=41 Identities=17% Similarity=0.231 Sum_probs=33.9
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHH
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFS 85 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~ 85 (355)
..+|.|||+|.+|+.++..|+.+|. +++++|++.-....+.
T Consensus 118 ~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~ 159 (353)
T 3h5n_A 118 NAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQIENTNLT 159 (353)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCBCCGGGGG
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCcCcccccc
Confidence 4689999999999999999999997 6999998754433443
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.16 E-value=0.014 Score=51.96 Aligned_cols=56 Identities=18% Similarity=0.262 Sum_probs=42.0
Q ss_pred ceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhh--cCCEEEEeC
Q 018506 46 ESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAE--ASDVVITML 109 (355)
Q Consensus 46 mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~--~aDiVi~~v 109 (355)
|||.|.| .|.+|+.++..|.+.||+|++.+|.+. .+.-..+..++++ .+|+||-+.
T Consensus 6 m~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~--------D~~d~~~~~~~~~~~~~d~vi~~a 64 (287)
T 3sc6_A 6 ERVIITGANGQLGKQLQEELNPEEYDIYPFDKKLL--------DITNISQVQQVVQEIRPHIIIHCA 64 (287)
T ss_dssp EEEEEESTTSHHHHHHHHHSCTTTEEEEEECTTTS--------CTTCHHHHHHHHHHHCCSEEEECC
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCEEEEeccccc--------CCCCHHHHHHHHHhcCCCEEEECC
Confidence 5899998 599999999999999999999998321 1111223445555 589998775
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* | Back alignment and structure |
|---|
Probab=95.15 E-value=0.0073 Score=56.19 Aligned_cols=35 Identities=17% Similarity=0.207 Sum_probs=31.6
Q ss_pred ceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhH
Q 018506 46 ESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNV 80 (355)
Q Consensus 46 mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~ 80 (355)
++|.|.|+ |.+|+.++..|++.|++|++.+|+++.
T Consensus 29 k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~r~~~~ 64 (381)
T 1n7h_A 29 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSN 64 (381)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSS
T ss_pred CeEEEEcCCchHHHHHHHHHHHCCCEEEEEecCCcc
Confidence 57999986 999999999999999999999998654
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=95.15 E-value=0.021 Score=50.50 Aligned_cols=39 Identities=13% Similarity=0.207 Sum_probs=32.4
Q ss_pred ceEEEE--cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHH
Q 018506 46 ESVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMF 84 (355)
Q Consensus 46 mkIgiI--G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l 84 (355)
.|+.+| |.|.+|.++++.|++.|++|++.+|++++.+.+
T Consensus 16 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~ 56 (266)
T 3p19_A 16 KKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKAL 56 (266)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHh
Confidence 355555 568999999999999999999999998876654
|
| >1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* | Back alignment and structure |
|---|
Probab=95.15 E-value=0.013 Score=52.30 Aligned_cols=60 Identities=15% Similarity=0.212 Sum_probs=42.7
Q ss_pred ceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhc--CCEEEEeCC
Q 018506 46 ESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEA--SDVVITMLP 110 (355)
Q Consensus 46 mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~--aDiVi~~v~ 110 (355)
|||.|.|+ |.+|+.+++.|. .||+|++.+|++.. ....+.-..+..++++. +|+||-+..
T Consensus 1 m~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~~----~~~D~~d~~~~~~~~~~~~~d~vih~a~ 63 (299)
T 1n2s_A 1 MNILLFGKTGQVGWELQRSLA-PVGNLIALDVHSKE----FCGDFSNPKGVAETVRKLRPDVIVNAAA 63 (299)
T ss_dssp CEEEEECTTSHHHHHHHHHTT-TTSEEEEECTTCSS----SCCCTTCHHHHHHHHHHHCCSEEEECCC
T ss_pred CeEEEECCCCHHHHHHHHHhh-cCCeEEEecccccc----ccccCCCHHHHHHHHHhcCCCEEEECcc
Confidence 68999986 999999999999 89999999997621 11111111234455555 999998753
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.14 E-value=0.065 Score=49.33 Aligned_cols=46 Identities=15% Similarity=0.130 Sum_probs=40.4
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP 90 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~ 90 (355)
-.+|.|+|+|.+|...++.+...|.+|++.++++++.+.+++.|+.
T Consensus 169 g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~ 214 (352)
T 1e3j_A 169 GTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGAD 214 (352)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCS
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCC
Confidence 3579999999999999999888999999999999998888877653
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.0049 Score=53.70 Aligned_cols=35 Identities=17% Similarity=0.192 Sum_probs=30.9
Q ss_pred ceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhH
Q 018506 46 ESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNV 80 (355)
Q Consensus 46 mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~ 80 (355)
++|-|.|+ |.+|..+++.|++.|++|++.+|++++
T Consensus 2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~ 37 (255)
T 2dkn_A 2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQAD 37 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred cEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhH
Confidence 46888865 999999999999999999999998764
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.02 Score=51.56 Aligned_cols=37 Identities=22% Similarity=0.167 Sum_probs=32.6
Q ss_pred CCCceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 43 CQFESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 43 ~~~mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
.++|+|.|.|+ |.+|+.++..|.+.||+|++.+|++.
T Consensus 5 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 42 (321)
T 3vps_A 5 TLKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRV 42 (321)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSS
T ss_pred cCCCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCc
Confidence 34689999987 99999999999999999999999765
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=95.11 E-value=0.099 Score=48.20 Aligned_cols=46 Identities=17% Similarity=0.226 Sum_probs=40.3
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHhCCCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVP 90 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~ 90 (355)
-.+|.|+|+|.+|...++.+...|. +|++.++++++.+.+++.|+.
T Consensus 172 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~ 218 (356)
T 1pl8_A 172 GHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGAD 218 (356)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCS
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCC
Confidence 3579999999999999998888998 899999999998888877754
|
| >3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.11 E-value=0.017 Score=54.88 Aligned_cols=33 Identities=18% Similarity=0.349 Sum_probs=31.0
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCCh
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 78 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~ 78 (355)
++|.|||.|..|..+|..|+++|++|+++++.+
T Consensus 23 ~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~ 55 (430)
T 3ihm_A 23 KRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK 55 (430)
T ss_dssp CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 579999999999999999999999999999765
|
| >3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* | Back alignment and structure |
|---|
Probab=95.06 E-value=0.02 Score=53.25 Aligned_cols=37 Identities=19% Similarity=0.324 Sum_probs=32.3
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
+..++|.|||.|..|..+|..|++.|++|+++++++.
T Consensus 9 m~~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 45 (379)
T 3alj_A 9 GKTRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSE 45 (379)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Confidence 3457899999999999999999999999999998653
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=95.05 E-value=0.067 Score=49.65 Aligned_cols=46 Identities=20% Similarity=0.303 Sum_probs=39.7
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHhCCCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVP 90 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~ 90 (355)
-.+|.|+|+|.+|...++.+...|. +|++.++++++.+.+++.|+.
T Consensus 191 g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~ 237 (373)
T 2fzw_A 191 GSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGAT 237 (373)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCS
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCc
Confidence 3579999999999999998888898 799999999998887776653
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=95.05 E-value=0.074 Score=48.67 Aligned_cols=46 Identities=17% Similarity=0.286 Sum_probs=40.8
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP 90 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~ 90 (355)
-.+|.|+|+|.+|...++.+...|.+|++.++++++.+.+++.|+.
T Consensus 167 g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~ 212 (340)
T 3s2e_A 167 GQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAE 212 (340)
T ss_dssp TSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCS
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCC
Confidence 4679999999999999999999999999999999999888877643
|
| >2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* | Back alignment and structure |
|---|
Probab=95.03 E-value=0.021 Score=53.45 Aligned_cols=35 Identities=17% Similarity=0.269 Sum_probs=32.1
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCCh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 78 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~ 78 (355)
+.|+|.|||+|..|...|..|.++|++|+++++++
T Consensus 2 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~ 36 (384)
T 2bi7_A 2 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRD 36 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEEecC
Confidence 34799999999999999999999999999999864
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=95.02 E-value=0.062 Score=46.99 Aligned_cols=41 Identities=20% Similarity=0.195 Sum_probs=34.7
Q ss_pred ceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 46 ESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 46 mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
+++-|.| .|.+|.++++.|++.|++|++.+|++++.+++.+
T Consensus 10 k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 51 (261)
T 3n74_A 10 KVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAG 51 (261)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence 4566665 5789999999999999999999999988877654
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} | Back alignment and structure |
|---|
Probab=95.01 E-value=0.012 Score=52.92 Aligned_cols=35 Identities=20% Similarity=0.285 Sum_probs=31.8
Q ss_pred ceEEEEcc-cHHhHHHHHHHHHC--CCcEEEEeCChhH
Q 018506 46 ESVGFIGL-GNMGFRMASNLMKA--GYKMAVHDVNCNV 80 (355)
Q Consensus 46 mkIgiIG~-G~mG~~ia~~L~~~--G~~V~v~dr~~~~ 80 (355)
|+|.|.|+ |.+|+.+++.|.+. ||+|++.+|++..
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~ 40 (312)
T 2yy7_A 3 PKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLN 40 (312)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCS
T ss_pred ceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCcc
Confidence 78999987 99999999999998 8999999997655
|
| >4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A* | Back alignment and structure |
|---|
Probab=95.01 E-value=0.085 Score=47.27 Aligned_cols=76 Identities=12% Similarity=0.212 Sum_probs=58.4
Q ss_pred CCceEEEEccc-HHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 44 QFESVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~G-~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
.-+++.|||-+ .+|.+++..|.+.+..|++++.. +.++.+.+++|||||.++..+..+.
T Consensus 178 ~Gk~vvViGRS~iVGkPla~LL~~~~ATVTi~Hs~--------------T~dl~~~~~~ADIvV~A~G~p~~i~------ 237 (303)
T 4b4u_A 178 AGKHAVVVGRSAILGKPMAMMLLQANATVTICHSR--------------TQNLPELVKQADIIVGAVGKAELIQ------ 237 (303)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT--------------CSSHHHHHHTCSEEEECSCSTTCBC------
T ss_pred CCCEEEEEeccccccchHHHHHHhcCCEEEEecCC--------------CCCHHHHhhcCCeEEeccCCCCccc------
Confidence 45789999955 57999999999999999998753 2467788899999999997763322
Q ss_pred CccccCCCCCCCeEEEEcCCCC
Q 018506 123 NGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~ 144 (355)
..+++ +|.+|||.+...
T Consensus 238 ~d~vk-----~GavVIDVGin~ 254 (303)
T 4b4u_A 238 KDWIK-----QGAVVVDAGFHP 254 (303)
T ss_dssp GGGSC-----TTCEEEECCCBC
T ss_pred ccccc-----CCCEEEEeceec
Confidence 12443 568999998753
|
| >2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* | Back alignment and structure |
|---|
Probab=94.99 E-value=0.026 Score=46.41 Aligned_cols=34 Identities=32% Similarity=0.306 Sum_probs=31.6
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCCh
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 78 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~ 78 (355)
|.+|.|||.|..|..+|..|.+.|.+|+++++++
T Consensus 1 ~~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~ 34 (180)
T 2ywl_A 1 MWDVIVVGGGPSGLSAALFLARAGLKVLVLDGGR 34 (180)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 3589999999999999999999999999999875
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.98 E-value=0.046 Score=47.84 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=32.4
Q ss_pred eEEEE-cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH
Q 018506 47 SVGFI-GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 85 (355)
Q Consensus 47 kIgiI-G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~ 85 (355)
+|-|. |.|.+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 4 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 43 (256)
T 1geg_A 4 VALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVA 43 (256)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 34455 5789999999999999999999999988766543
|
| >2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* | Back alignment and structure |
|---|
Probab=94.98 E-value=0.024 Score=55.37 Aligned_cols=42 Identities=19% Similarity=0.256 Sum_probs=36.1
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
..++-|+|+|.+|.+++..|++.|.+|++++|+.++++.+.+
T Consensus 364 ~k~vlV~GaGGig~aia~~L~~~G~~V~i~~R~~~~a~~la~ 405 (523)
T 2o7s_A 364 SKTVVVIGAGGAGKALAYGAKEKGAKVVIANRTYERALELAE 405 (523)
T ss_dssp --CEEEECCSHHHHHHHHHHHHHCC-CEEEESSHHHHHHHHH
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 357899999999999999999999999999999999887765
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.046 Score=50.19 Aligned_cols=46 Identities=11% Similarity=0.043 Sum_probs=39.8
Q ss_pred CceEEEEcccHHhHHHHHHHHHC--CCcEEEEeCChhHHHHHHhCCCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKA--GYKMAVHDVNCNVMKMFSDMGVP 90 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~--G~~V~v~dr~~~~~~~l~~~g~~ 90 (355)
-.+|.|+|+|.+|...++.+... |.+|++.++++++.+.+++.|+.
T Consensus 171 g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~ 218 (344)
T 2h6e_A 171 EPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGAD 218 (344)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCS
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCC
Confidence 46799999999999999988888 99999999999998877776653
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.95 E-value=0.082 Score=48.53 Aligned_cols=45 Identities=20% Similarity=0.231 Sum_probs=39.4
Q ss_pred CceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCC
Q 018506 45 FESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGV 89 (355)
Q Consensus 45 ~mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~ 89 (355)
..+|.|+|+ |.+|..+++.+...|.+|++.+|++++.+.+.+.|.
T Consensus 170 g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~ 215 (347)
T 2hcy_A 170 GHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGG 215 (347)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTC
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCC
Confidence 367999999 999999999999999999999999998877776654
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=94.95 E-value=0.0059 Score=54.04 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=31.8
Q ss_pred CCceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhH
Q 018506 44 QFESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNV 80 (355)
Q Consensus 44 ~~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~ 80 (355)
++++|-|.| .|.+|+.++..|++.|++|++.+|++.+
T Consensus 2 ~~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~ 39 (267)
T 3rft_A 2 AMKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLD 39 (267)
T ss_dssp CEEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCcc
Confidence 345677777 7999999999999999999999998754
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=94.94 E-value=0.027 Score=52.26 Aligned_cols=45 Identities=20% Similarity=0.285 Sum_probs=39.1
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH-hCCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS-DMGV 89 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~-~~g~ 89 (355)
-.+|.|+|+|.+|...++.+...|.+|++.++++++.+.+. +.|+
T Consensus 188 g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa 233 (366)
T 1yqd_A 188 GKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGA 233 (366)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCC
Confidence 36799999999999999999999999999999999887766 4553
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=94.92 E-value=0.068 Score=49.29 Aligned_cols=35 Identities=29% Similarity=0.430 Sum_probs=30.8
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCCh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNC 78 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~ 78 (355)
...+|.|||+|.+|+.++.+|+..|. .++++|.+.
T Consensus 35 ~~~~VlivG~GGlG~~ia~~La~~Gvg~itlvD~d~ 70 (346)
T 1y8q_A 35 RASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQ 70 (346)
T ss_dssp HTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEECCC
Confidence 34789999999999999999999997 699997653
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.048 Score=47.78 Aligned_cols=39 Identities=21% Similarity=0.365 Sum_probs=33.1
Q ss_pred eEEEE--cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH
Q 018506 47 SVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 85 (355)
Q Consensus 47 kIgiI--G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~ 85 (355)
|+.+| |.|.+|.++++.|++.|++|++.+|++++.+.+.
T Consensus 13 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 53 (256)
T 3gaf_A 13 AVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVA 53 (256)
T ss_dssp CEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 45555 6789999999999999999999999988876654
|
| >3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.017 Score=52.88 Aligned_cols=34 Identities=26% Similarity=0.241 Sum_probs=31.3
Q ss_pred CceEEEEcccHHhHHHHHHHHH---CCCcEEEEeCCh
Q 018506 45 FESVGFIGLGNMGFRMASNLMK---AGYKMAVHDVNC 78 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~---~G~~V~v~dr~~ 78 (355)
|++|.|||.|..|...|..|++ .|++|+++++++
T Consensus 1 m~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~ 37 (342)
T 3qj4_A 1 MAQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKAD 37 (342)
T ss_dssp CEEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSS
T ss_pred CCcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCC
Confidence 4689999999999999999999 999999999764
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.89 E-value=0.045 Score=48.42 Aligned_cols=39 Identities=15% Similarity=0.230 Sum_probs=32.5
Q ss_pred eEEEE-cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH
Q 018506 47 SVGFI-GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 85 (355)
Q Consensus 47 kIgiI-G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~ 85 (355)
++-|. |.|.+|.++++.|++.|++|++.+|++++.+.+.
T Consensus 13 ~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~ 52 (271)
T 3tzq_B 13 VAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAA 52 (271)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 34444 5689999999999999999999999988776654
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.89 E-value=0.028 Score=52.33 Aligned_cols=75 Identities=12% Similarity=0.168 Sum_probs=52.3
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCC---CCHH---HHhhcCCEEEEeCCCchHHHHH
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK---ETPF---EVAEASDVVITMLPSSSHVLDV 118 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~---~s~~---e~~~~aDiVi~~v~~~~~~~~v 118 (355)
-.+|.|+|+|.+|...++.+...|.+|++.++++++.+.+++.|+... .+.+ ++....|+||-++..+..++..
T Consensus 195 g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~g~Dvvid~~g~~~~~~~~ 274 (369)
T 1uuf_A 195 GKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHNLDDF 274 (369)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCCCHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEeccccHHHHHHhhcCCCEEEECCCCHHHHHHH
Confidence 367999999999999999998899999999999999888777665321 1111 1113457777776544334443
Q ss_pred h
Q 018506 119 Y 119 (355)
Q Consensus 119 l 119 (355)
+
T Consensus 275 ~ 275 (369)
T 1uuf_A 275 T 275 (369)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.88 E-value=0.053 Score=47.01 Aligned_cols=41 Identities=15% Similarity=0.199 Sum_probs=33.8
Q ss_pred ceEEEE-cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 46 ESVGFI-GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 46 mkIgiI-G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
+++-|. |.|.+|..+++.|++.|++|++.+|++++.+.+.+
T Consensus 6 k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~ 47 (247)
T 3lyl_A 6 KVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFEN 47 (247)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 445555 56899999999999999999999999888766543
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} | Back alignment and structure |
|---|
Probab=94.84 E-value=0.004 Score=54.97 Aligned_cols=35 Identities=14% Similarity=0.204 Sum_probs=31.5
Q ss_pred CceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 45 FESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 45 ~mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
|++|.|.|+ |.+|+.+++.|.+.|++|++.+|+++
T Consensus 2 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 37 (267)
T 3ay3_A 2 LNRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDL 37 (267)
T ss_dssp EEEEEEESTTSHHHHHHGGGGGGTEEEEEECCSSCC
T ss_pred CceEEEECCCCHHHHHHHHHHHhCCCEEEEEeCCCc
Confidence 357999986 99999999999999999999999865
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=94.84 E-value=0.065 Score=47.06 Aligned_cols=40 Identities=18% Similarity=0.169 Sum_probs=33.9
Q ss_pred ceEEEE-cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH
Q 018506 46 ESVGFI-GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 85 (355)
Q Consensus 46 mkIgiI-G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~ 85 (355)
++|-|. |.|.+|.++++.|++.|++|++.+|++++.+.+.
T Consensus 8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 48 (260)
T 1nff_A 8 KVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMA 48 (260)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 456666 5789999999999999999999999988876654
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=94.83 E-value=0.086 Score=46.73 Aligned_cols=40 Identities=18% Similarity=0.185 Sum_probs=32.9
Q ss_pred ceEEEE-cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH
Q 018506 46 ESVGFI-GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 85 (355)
Q Consensus 46 mkIgiI-G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~ 85 (355)
++|-|. |.|.+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 23 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 63 (277)
T 2rhc_B 23 EVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTL 63 (277)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 345555 6789999999999999999999999988766543
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=94.82 E-value=0.048 Score=48.15 Aligned_cols=42 Identities=14% Similarity=0.252 Sum_probs=33.4
Q ss_pred CCceEEEE--cccHHhHHHHHHHHHCCCcEEEE-eCChhHHHHHH
Q 018506 44 QFESVGFI--GLGNMGFRMASNLMKAGYKMAVH-DVNCNVMKMFS 85 (355)
Q Consensus 44 ~~mkIgiI--G~G~mG~~ia~~L~~~G~~V~v~-dr~~~~~~~l~ 85 (355)
..+|+.+| |.|.+|.++++.|++.|++|++. +|+++..+.+.
T Consensus 24 ~~~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~ 68 (272)
T 4e3z_A 24 SDTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVV 68 (272)
T ss_dssp CCSCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCChhHHHHHH
Confidence 34566666 67999999999999999999775 78887766554
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=94.81 E-value=0.07 Score=46.73 Aligned_cols=41 Identities=15% Similarity=0.243 Sum_probs=34.4
Q ss_pred ceEEEE-cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 46 ESVGFI-GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 46 mkIgiI-G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
+++-|. |.|.+|.++++.|++.|++|++.+|++++.+.+.+
T Consensus 9 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 50 (259)
T 4e6p_A 9 KSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAA 50 (259)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 455566 56899999999999999999999999988776543
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=94.80 E-value=0.11 Score=45.65 Aligned_cols=40 Identities=15% Similarity=0.206 Sum_probs=33.1
Q ss_pred ceEEEE-cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH
Q 018506 46 ESVGFI-GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 85 (355)
Q Consensus 46 mkIgiI-G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~ 85 (355)
+++-|. |.|.+|.++++.|++.|++|++.+|++++.+.+.
T Consensus 9 k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~ 49 (265)
T 3lf2_A 9 AVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAE 49 (265)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 334444 5789999999999999999999999998876654
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* | Back alignment and structure |
|---|
Probab=94.80 E-value=0.13 Score=44.67 Aligned_cols=79 Identities=9% Similarity=0.178 Sum_probs=50.6
Q ss_pred EEEE-cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEe--CCCchHHHHHhcCCCc
Q 018506 48 VGFI-GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITM--LPSSSHVLDVYNGPNG 124 (355)
Q Consensus 48 IgiI-G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~--v~~~~~~~~vl~~~~~ 124 (355)
+-|. |.|.+|.++++.|++.|++|++.+|++++.+.+.+. . ..++.++. +.++++++.++.....
T Consensus 3 vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~----------~--~~~~~~~~~Dv~~~~~v~~~~~~~~~ 70 (248)
T 3asu_A 3 VLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDE----------L--GDNLYIAQLDVRNRAAIEEMLASLPA 70 (248)
T ss_dssp EEETTTTSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----------H--CTTEEEEECCTTCHHHHHHHHHTSCT
T ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH----------h--cCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 4444 568999999999999999999999998877665431 0 01233322 4556677777765432
Q ss_pred cccCCCCCCCeEEEEcCCC
Q 018506 125 LLQGGNSVRPQLLIDSSTI 143 (355)
Q Consensus 125 ~l~~~~~~~~~ivi~~st~ 143 (355)
.... =.++|+....
T Consensus 71 ~~g~-----iD~lvnnAg~ 84 (248)
T 3asu_A 71 EWCN-----IDILVNNAGL 84 (248)
T ss_dssp TTCC-----CCEEEECCCC
T ss_pred hCCC-----CCEEEECCCc
Confidence 2211 1367776553
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.80 E-value=0.076 Score=45.54 Aligned_cols=41 Identities=15% Similarity=0.200 Sum_probs=34.4
Q ss_pred ceEEEE-cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 46 ESVGFI-GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 46 mkIgiI-G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
++|-|. |.|.+|..+++.|++.|++|++.+|++++.+.+.+
T Consensus 6 k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 47 (234)
T 2ehd_A 6 GAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAA 47 (234)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 346666 67899999999999999999999999888766543
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=94.79 E-value=0.044 Score=48.17 Aligned_cols=42 Identities=14% Similarity=0.127 Sum_probs=35.4
Q ss_pred CCceEEEEcc-c-HHhHHHHHHHHHCCCcEEEEeCChhHHHHHH
Q 018506 44 QFESVGFIGL-G-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 85 (355)
Q Consensus 44 ~~mkIgiIG~-G-~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~ 85 (355)
+.+++-|.|. | .+|..+++.|++.|++|++.+|+.++.+.+.
T Consensus 21 ~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~ 64 (266)
T 3o38_A 21 KGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETR 64 (266)
T ss_dssp TTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHH
Confidence 3456777798 8 5999999999999999999999988876654
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=94.78 E-value=0.039 Score=48.02 Aligned_cols=41 Identities=17% Similarity=0.160 Sum_probs=33.1
Q ss_pred CCceEEEE-cccHHhHHHHHHHHHCCCcEEEEeCC-hhHHHHH
Q 018506 44 QFESVGFI-GLGNMGFRMASNLMKAGYKMAVHDVN-CNVMKMF 84 (355)
Q Consensus 44 ~~mkIgiI-G~G~mG~~ia~~L~~~G~~V~v~dr~-~~~~~~l 84 (355)
..++|-|. |.|.+|..+++.|++.|++|++.+|+ +++.+.+
T Consensus 6 ~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~ 48 (258)
T 3afn_B 6 KGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDET 48 (258)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCCchhhHHHH
Confidence 33556666 56999999999999999999999998 7665544
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.77 E-value=0.11 Score=46.12 Aligned_cols=40 Identities=18% Similarity=0.431 Sum_probs=31.2
Q ss_pred ceEEEE--cccHHhHHHHHHHHHCCCcEEEEeC-ChhHHHHHH
Q 018506 46 ESVGFI--GLGNMGFRMASNLMKAGYKMAVHDV-NCNVMKMFS 85 (355)
Q Consensus 46 mkIgiI--G~G~mG~~ia~~L~~~G~~V~v~dr-~~~~~~~l~ 85 (355)
.|+.+| |.|.+|.++++.|++.|++|++.+| +++..+.+.
T Consensus 29 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~ 71 (280)
T 4da9_A 29 RPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVI 71 (280)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHH
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH
Confidence 345555 5689999999999999999999985 666655543
|
| >2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 | Back alignment and structure |
|---|
Probab=94.77 E-value=0.03 Score=52.44 Aligned_cols=36 Identities=19% Similarity=0.226 Sum_probs=32.6
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
..++|.|||.|..|..+|..|++.|++|+++++.+.
T Consensus 4 ~~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 39 (397)
T 2vou_A 4 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ 39 (397)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 346899999999999999999999999999998654
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=94.75 E-value=0.02 Score=50.92 Aligned_cols=35 Identities=23% Similarity=0.369 Sum_probs=31.9
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCCh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 78 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~ 78 (355)
+.++|.|||.|.+|..-+..|.+.|++|++++.+.
T Consensus 12 ~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~ 46 (274)
T 1kyq_A 12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL 46 (274)
T ss_dssp TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred CCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 45889999999999999999999999999998654
|
| >1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* | Back alignment and structure |
|---|
Probab=94.74 E-value=0.026 Score=52.28 Aligned_cols=34 Identities=24% Similarity=0.220 Sum_probs=31.3
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCCh
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 78 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~ 78 (355)
+.+|.|||.|..|...|..|+++|++|+++++..
T Consensus 17 ~~dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~~ 50 (382)
T 1ryi_A 17 HYEAVVIGGGIIGSAIAYYLAKENKNTALFESGT 50 (382)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 4689999999999999999999999999999853
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* | Back alignment and structure |
|---|
Probab=94.74 E-value=0.055 Score=49.30 Aligned_cols=33 Identities=33% Similarity=0.372 Sum_probs=29.8
Q ss_pred CceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCC
Q 018506 45 FESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVN 77 (355)
Q Consensus 45 ~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~ 77 (355)
.|+|.|.| .|.+|+.++..|++.||+|++.+|+
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~ 35 (348)
T 1ek6_A 2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNF 35 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECS
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecC
Confidence 36899997 6999999999999999999999875
|
| >4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} | Back alignment and structure |
|---|
Probab=94.73 E-value=0.025 Score=54.63 Aligned_cols=34 Identities=24% Similarity=0.317 Sum_probs=31.3
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCCh
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 78 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~ 78 (355)
|++|.|||+|.-|..-|..|+++|++|+|+.++.
T Consensus 1 Mk~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~ 34 (501)
T 4dgk_A 1 MKPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRD 34 (501)
T ss_dssp CCCEEEECCHHHHHHHHHHHHHTTCCEEEECCC-
T ss_pred CCCEEEECCcHHHHHHHHHHHHCCCcEEEEccCC
Confidence 5789999999999999999999999999998864
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=94.73 E-value=0.026 Score=51.28 Aligned_cols=35 Identities=11% Similarity=0.162 Sum_probs=30.3
Q ss_pred CCceEEEEc-ccHHhHHHHHHHHHCC--CcEEEEeCCh
Q 018506 44 QFESVGFIG-LGNMGFRMASNLMKAG--YKMAVHDVNC 78 (355)
Q Consensus 44 ~~mkIgiIG-~G~mG~~ia~~L~~~G--~~V~v~dr~~ 78 (355)
+.|||.|.| .|.+|+.++..|++.| ++|++.+|++
T Consensus 2 ~~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~ 39 (336)
T 2hun_A 2 HSMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLG 39 (336)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCC
T ss_pred CCCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCc
Confidence 347899998 5999999999999986 8999999864
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=94.73 E-value=0.035 Score=49.21 Aligned_cols=39 Identities=15% Similarity=0.239 Sum_probs=33.2
Q ss_pred eEEEE--cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH
Q 018506 47 SVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 85 (355)
Q Consensus 47 kIgiI--G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~ 85 (355)
|+.+| |.|.+|.++++.|++.|++|++.+|++++.+++.
T Consensus 27 k~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~ 67 (271)
T 4ibo_A 27 RTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTV 67 (271)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 55555 6789999999999999999999999998876654
|
| >3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* | Back alignment and structure |
|---|
Probab=94.71 E-value=0.021 Score=51.64 Aligned_cols=35 Identities=23% Similarity=0.170 Sum_probs=32.0
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCCh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 78 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~ 78 (355)
++++|.|||.|.-|...|..|++.|++|+++++.+
T Consensus 21 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~ 55 (338)
T 3itj_A 21 VHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMM 55 (338)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCC
Confidence 44689999999999999999999999999999854
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=94.71 E-value=0.09 Score=48.82 Aligned_cols=45 Identities=16% Similarity=0.234 Sum_probs=38.9
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHhCCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGV 89 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~~g~ 89 (355)
-.+|.|+|+|.+|...++.+...|. .|++.++++++.+.+++.|+
T Consensus 183 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa 228 (370)
T 4ej6_A 183 GSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGA 228 (370)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTC
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC
Confidence 3579999999999999999999998 79999999999887776554
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=94.71 E-value=0.066 Score=47.58 Aligned_cols=40 Identities=15% Similarity=0.318 Sum_probs=33.8
Q ss_pred eEEEE--cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 47 SVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 47 kIgiI--G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
|+.+| |.|.+|.++++.|++.|++|++.+|++++.+.+.+
T Consensus 30 k~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~ 71 (277)
T 3gvc_A 30 KVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAAT 71 (277)
T ss_dssp CEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 55555 67899999999999999999999999888776543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 355 | ||||
| d1vpda2 | 161 | c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase | 1e-39 | |
| d3cuma2 | 162 | c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase | 3e-34 | |
| d3cuma1 | 134 | a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydroge | 2e-32 | |
| d2cvza2 | 156 | c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase | 9e-27 | |
| d1vpda1 | 133 | a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydroge | 4e-25 | |
| d2cvza1 | 132 | a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydroge | 2e-24 | |
| d1pgja2 | 178 | c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase | 6e-23 | |
| d1i36a2 | 152 | c.2.1.6 (A:1-152) Conserved hypothetical protein M | 7e-23 | |
| d2i76a2 | 153 | c.2.1.6 (A:2-154) Hypothetical protein TM1727 {The | 1e-19 | |
| d2pgda2 | 176 | c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase | 5e-17 | |
| d2b0ja2 | 242 | c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopt | 3e-14 | |
| d2pv7a2 | 152 | c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA { | 6e-14 | |
| d2f1ka2 | 165 | c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {S | 2e-12 | |
| d1yqga2 | 152 | c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductas | 9e-06 | |
| d2ahra2 | 152 | c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductas | 1e-05 | |
| d1jaya_ | 212 | c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase | 1e-04 | |
| d1bg6a2 | 184 | c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvalin | 7e-04 | |
| d1e5qa1 | 182 | c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase | 0.003 |
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Score = 136 bits (342), Expect = 1e-39
Identities = 71/171 (41%), Positives = 92/171 (53%), Gaps = 12/171 (7%)
Query: 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 107
VGFIGLG MG M+ NL+KAGY + V D N + G T T +AE DV+IT
Sbjct: 3 VGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIIT 62
Query: 108 MLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW 167
MLP+S HV +V G NG+++G +LID S+I P SR I + LK K
Sbjct: 63 MLPNSPHVKEVALGENGIIEGAKPGT--VLIDMSSIAPLASREI-----SDALKAK---- 111
Query: 168 ENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCG 218
MLDAPVSGG A GTL+ MVGG + + L +M + ++ G
Sbjct: 112 -GVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTG 161
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 121 bits (305), Expect = 3e-34
Identities = 71/171 (41%), Positives = 100/171 (58%), Gaps = 12/171 (7%)
Query: 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 107
+ FIGLG+MG MA+NL+KAGY + V D+ + + G + + + +DVVI+
Sbjct: 4 IAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVIS 63
Query: 108 MLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW 167
MLP+S HV +Y +GLL L+++ STI P ++R I AA +E+
Sbjct: 64 MLPASQHVEGLYLDDDGLLAHIAP--GTLVLECSTIAPTSARKIHAA-----ARER---- 112
Query: 168 ENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCG 218
MLDAPVSGG A AGTLTFMVGG +A + A+PLF +MG+N + G
Sbjct: 113 -GLAMLDAPVSGGTAGAAAGTLTFMVGGDAEALEKARPLFEAMGRNIFHAG 162
|
| >d3cuma1 a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 134 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 115 bits (290), Expect = 2e-32
Identities = 57/129 (44%), Positives = 80/129 (62%)
Query: 220 AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVP 279
G G AK+CNN +AV M+G +EA+ LG + G+ A L +I+ SS W+ + YNP P
Sbjct: 2 DGAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEIMRRSSGGNWALEVYNPWP 61
Query: 280 GVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSK 339
GVME PASR+Y GGF ++LMAKDL LA +A+ P+ S A +Y L + G+ +
Sbjct: 62 GVMENAPASRDYSGGFMAQLMAKDLGLAQEAAQASASSTPMGSLALSLYRLLLKQGYAER 121
Query: 340 DFSCVFQHY 348
DFS V + +
Sbjct: 122 DFSVVQKLF 130
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Score = 101 bits (253), Expect = 9e-27
Identities = 50/173 (28%), Positives = 79/173 (45%), Gaps = 18/173 (10%)
Query: 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVV 105
E V FIGLG MG+ MA +L + + + ++ + G + V+
Sbjct: 1 EKVAFIGLGAMGYPMAGHLARRFPTLVWNRTFEKALRHQEEFGSEAVPLERV--AEARVI 58
Query: 106 ITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKD 165
T LP++ V +V +D+++ +P+ SR ++ L+EK
Sbjct: 59 FTCLPTTREVYEVAEALY-----PYLREGTYWVDATSGEPEASRRLAER-----LREK-- 106
Query: 166 SWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCG 218
LDAPVSGG AEAGTLT M+GG E+A + +P L+ K ++ G
Sbjct: 107 ---GVTYLDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPF-LAYAKKVVHVG 155
|
| >d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} Length = 133 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Score = 96.7 bits (240), Expect = 4e-25
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 7/128 (5%)
Query: 221 GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPG 280
G G K+ N + +A+++ +SEALTL G++ + + + A D+ P+
Sbjct: 3 GAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVM 62
Query: 281 VMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKD 340
P GF L KDL AL ++ VG PLT+ ++ L +GH + D
Sbjct: 63 DRNFKP-------GFRIDLHIKDLANALDTSHGVGAQLPLTAAVMEMMQALRADGHGNDD 115
Query: 341 FSCVFQHY 348
S + +Y
Sbjct: 116 HSALACYY 123
|
| >d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 132 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Score = 94.4 bits (234), Expect = 2e-24
Identities = 31/128 (24%), Positives = 52/128 (40%), Gaps = 6/128 (4%)
Query: 221 GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPG 280
G G A K NN +AV++ E L G+SA +++N+SS R ++++ P
Sbjct: 2 GAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQRV 61
Query: 281 VMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKD 340
+ R + FA L+ KDL +A+ PL A+++Y D
Sbjct: 62 LT------RAFPKTFALGLLVKDLGIAMGVLDGEKAPSPLLRLAREVYEMAKRELGPDAD 115
Query: 341 FSCVFQHY 348
+
Sbjct: 116 HVEALRLL 123
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Score = 92.0 bits (227), Expect = 6e-23
Identities = 30/181 (16%), Positives = 58/181 (32%), Gaps = 11/181 (6%)
Query: 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKET-PFEVAEASDVVI 106
VG +GLG MG +A N+ + G+K+AV + + + F + E +
Sbjct: 4 VGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFA 63
Query: 107 TMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 166
L L + ++ +D + + + ++
Sbjct: 64 ASLKKPRKALILVQAGAATDSTIEQLKKVFEKGDILVDTGNAH-----FKDQGRRAQQLE 118
Query: 167 WENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTI----YCGGAGN 222
L +SGG A G F GG+ ++ +P+ + G+
Sbjct: 119 AAGLRFLGMGISGGEEGARKGP-AFFPGGTLSVWEEIRPIVEAAAAKADDGRPCVTMNGS 177
Query: 223 G 223
G
Sbjct: 178 G 178
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 91.1 bits (225), Expect = 7e-23
Identities = 32/171 (18%), Positives = 52/171 (30%), Gaps = 24/171 (14%)
Query: 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 107
VGFIG G + +AS L G ++ + + V ET E + VVI+
Sbjct: 3 VGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVIS 62
Query: 108 MLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW 167
+ + + +D + I P+T R S+ +
Sbjct: 63 AVTPGVALGAARRAGRH--------VRGIYVDINNISPETVRMASSLIEKG--------- 105
Query: 168 ENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCG 218
+DA + G V A G + + G N G
Sbjct: 106 ---GFVDAAIMGSVRRKGADIRIIASGRDAEEFMKLNR----YGLNIEVRG 149
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} Length = 153 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Score = 82.3 bits (202), Expect = 1e-19
Identities = 18/171 (10%), Positives = 43/171 (25%), Gaps = 22/171 (12%)
Query: 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 107
+ F+G G + L + + + + +++ T + E + VV
Sbjct: 2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVF- 60
Query: 108 MLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW 167
++ ++ V N N + + + KK
Sbjct: 61 VIVPDRYIKTVANHLN---------------------LGDAVLVHCSGFLSSEIFKKSGR 99
Query: 168 ENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCG 218
+ + S + F + G E K + +
Sbjct: 100 ASIHPNFSFSSLEKALEMKDQIVFGLEGDERGLPIVKKIAEEISGKYFVIP 150
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Score = 75.8 bits (185), Expect = 5e-17
Identities = 30/169 (17%), Positives = 63/169 (37%), Gaps = 8/169 (4%)
Query: 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 107
+ IGL MG + N+ G+ + + + + F K T A + + +++
Sbjct: 5 IALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEA--KGTKVLGAHSLEEMVS 62
Query: 108 MLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW 167
L ++ + + + P L I ID S + + + +
Sbjct: 63 KLKKPRRIILLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEY-----RDTMRRCRDLKD 117
Query: 168 ENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIY 216
+ + + + VSGG A G + M GG+++A+ K +F +
Sbjct: 118 KGILFVGSGVSGGEDGARYGP-SLMPGGNKEAWPHIKAIFQGIAAKVGT 165
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Score = 69.2 bits (169), Expect = 3e-14
Identities = 21/130 (16%), Positives = 38/130 (29%), Gaps = 16/130 (12%)
Query: 86 DMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDP 145
D+G+ E E +D+VIT LP + D+ + G ++ + TI
Sbjct: 126 DVGLKVTSDDREAVEGADIVITWLPKGNKQPDIIKKFADAIPEG-----AIVTHACTIPT 180
Query: 146 QTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKP 205
I L + + + + G V + SE+A
Sbjct: 181 TKFAKIFKD-----LGRE------DLNITSYHPGCVPEMKGQVYIAEGYASEEAVNKLYE 229
Query: 206 LFLSMGKNTI 215
+
Sbjct: 230 IGKIARGKAF 239
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Score = 66.4 bits (161), Expect = 6e-14
Identities = 20/172 (11%), Positives = 45/172 (26%), Gaps = 33/172 (19%)
Query: 44 QFESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEAS 102
+ +G G +G A L +GY +++ D + +
Sbjct: 8 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAESILANADVVIVSVPINLTL 67
Query: 103 DVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKE 162
+ + + P + LL D +++ + +
Sbjct: 68 ETIERLKPYLTE-------------------NMLLADLTSVKREPLAKMLEV-------- 100
Query: 163 KKDSWENPVMLDAPVSGGVLAAEAG-TLTFMVGGSEDAYQAAKPLFLSMGKN 213
V+ P+ G +A+ A + G + Y+ G
Sbjct: 101 ----HTGAVLGLHPMFGADIASMAKQVVVRCDGRFPERYEWLLEQIQIWGAK 148
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Score = 62.5 bits (150), Expect = 2e-12
Identities = 19/177 (10%), Positives = 50/177 (28%), Gaps = 21/177 (11%)
Query: 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 107
+G +GLG +G +A +L + G+ + + + + + E + ++ T
Sbjct: 3 IGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVER-----QLVDEAGQDLSLLQT 57
Query: 108 MLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW 167
P + ++ D +++ + + +
Sbjct: 58 AKIIFLCTPIQLILPTLEKLIPHLSPTAIVTDVASVKTAIAEPA---------SQLWSGF 108
Query: 168 ENPVMLDAPVSGGVLAAEAG-------TLTFMVGGSEDAYQAAKPLFLSMGKNTIYC 217
+ + G+ AE LT + + + +G C
Sbjct: 109 IGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPEQLACLRSVLEPLGVKIYLC 165
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Score = 43.0 bits (100), Expect = 9e-06
Identities = 24/166 (14%), Positives = 50/166 (30%), Gaps = 22/166 (13%)
Query: 48 VGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVI 106
V F+G GNM +A L+K G Y++ + + + + DV+I
Sbjct: 3 VYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELHSDDVLI 62
Query: 107 TMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 166
+ + + + + + +++A +S L
Sbjct: 63 LAVKPQDM---------------EAACKNIRTNGALV-----LSVAAGLSVGTLSRYLGG 102
Query: 167 WENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGK 212
V + G + + SE + A + S+G
Sbjct: 103 TRRIVRVMPNTPGKIGLG-VSGMYAEAEVSETDRRIADRIMKSVGL 147
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Score = 42.8 bits (99), Expect = 1e-05
Identities = 15/165 (9%), Positives = 47/165 (28%), Gaps = 21/165 (12%)
Query: 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 107
+G IG+G M + L + +++ + + K ++ + +
Sbjct: 3 IGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQ-------DLI 55
Query: 108 MLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW 167
+ +L+ + +P + + + + + + + + ++
Sbjct: 56 DQVDLVILGIKPQLFETVLKPLHFKQPIISMAAGISLQRLATFVGQDLPLLRIMPNMNAQ 115
Query: 168 ENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGK 212
+ LT S++ + L S G
Sbjct: 116 IL--------------QSSTALTGNALVSQELQARVRDLTDSFGS 146
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 40.4 bits (93), Expect = 1e-04
Identities = 22/187 (11%), Positives = 47/187 (25%), Gaps = 7/187 (3%)
Query: 48 VGFI-GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVI 106
V + G GN+G +A L G+++ V + + ++
Sbjct: 3 VALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDAA 62
Query: 107 TMLPSSSHVLDVYNGPNGL------LQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCIL 160
+ + + + L+ V P + + S SAA +
Sbjct: 63 EACDIAVLTIPWEHAIDTARDLKNILREKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEV 122
Query: 161 KEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGA 220
E + + A + + E + G + G
Sbjct: 123 LESEKVVSALHTIPAARFANLDEKFDWDVPVCGDDDESKKVVMSLISEIDGLRPLDAGPL 182
Query: 221 GNGAAAK 227
N +
Sbjct: 183 SNSRLVE 189
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Score = 38.0 bits (87), Expect = 7e-04
Identities = 16/62 (25%), Positives = 25/62 (40%)
Query: 47 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVI 106
+ +GLGN G A+ L G + D++ +K D G E P A ++
Sbjct: 3 TYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLL 62
Query: 107 TM 108
T
Sbjct: 63 TS 64
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Score = 35.8 bits (81), Expect = 0.003
Identities = 10/40 (25%), Positives = 14/40 (35%)
Query: 47 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86
SV +G G + L +G K+ V K S
Sbjct: 4 SVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSA 43
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 355 | |||
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.98 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.97 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 99.94 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 99.93 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 99.93 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 99.89 | |
| d3cuma1 | 134 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.88 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 99.86 | |
| d1vpda1 | 133 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.85 | |
| d2cvza1 | 132 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 99.83 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 99.81 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 99.77 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 99.74 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 99.74 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 99.72 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 99.7 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 99.65 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 99.62 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 99.6 | |
| d2b0ja2 | 242 | 5,10-methenyltetrahydromethanopterin hydrogenase, | 99.5 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 99.47 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 99.47 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 99.44 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 99.23 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 99.01 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 98.95 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 98.94 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 98.9 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 98.88 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 98.86 | |
| d1mv8a1 | 98 | GDP-mannose 6-dehydrogenase, middle domain {Pseudo | 98.83 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 98.81 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 98.7 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 98.69 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 98.69 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 98.68 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 98.64 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 98.5 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 98.49 | |
| d1dlja1 | 98 | UDP-glucose dehydrogenase (UDPGDH), middle domain | 98.45 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 98.42 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 98.39 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 98.34 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 98.29 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 98.25 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 98.21 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 98.21 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 98.2 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 98.18 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 98.18 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 98.17 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 98.13 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 98.1 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 98.07 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 98.05 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 98.04 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 98.03 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 98.0 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 98.0 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 97.95 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 97.92 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 97.91 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 97.89 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 97.88 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 97.86 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 97.84 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 97.81 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 97.77 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.75 | |
| d1qmga2 | 226 | Class II ketol-acid reductoisomerase (KARI) {Spina | 97.75 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 97.73 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 97.73 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 97.69 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 97.67 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 97.63 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.63 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 97.62 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 97.6 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 97.59 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 97.59 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 97.54 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 97.53 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 97.51 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 97.48 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 97.43 | |
| d1ks9a1 | 124 | Ketopantoate reductase PanE {Escherichia coli [Tax | 97.34 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 97.32 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.31 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 97.28 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 97.21 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 97.17 | |
| d1lc0a1 | 172 | Biliverdin reductase {Rat (Rattus norvegicus) [Tax | 97.12 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 97.08 | |
| d2pgda1 | 297 | 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ov | 97.02 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 97.0 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 97.0 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 96.99 | |
| d1pgja1 | 300 | 6-phosphogluconate dehydrogenase (6PGD) {Trypanoso | 96.99 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 96.99 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 96.95 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 96.95 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 96.95 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 96.94 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 96.92 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.9 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 96.83 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 96.82 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.81 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 96.8 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 96.8 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 96.78 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 96.78 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 96.71 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 96.64 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 96.63 | |
| d1txga1 | 155 | Glycerol-3-phosphate dehydrogenase {Archaeoglobus | 96.63 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 96.62 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 96.6 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.57 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 96.57 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 96.55 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 96.53 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 96.52 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.51 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 96.5 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 96.44 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.43 | |
| d1mv8a3 | 136 | GDP-mannose 6-dehydrogenase, GDP-binding domain {P | 96.43 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 96.36 | |
| d1i36a1 | 112 | Conserved hypothetical protein MTH1747 {Archaeon M | 96.34 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 96.33 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.32 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 96.31 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.31 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 96.31 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 96.31 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 96.28 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 96.27 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 96.26 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 96.26 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 96.25 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 96.25 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 96.23 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 96.23 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 96.22 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 96.17 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 96.13 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 96.12 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 96.08 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 96.08 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 96.06 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 96.0 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 96.0 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 95.99 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 95.98 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 95.98 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 95.92 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 95.92 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 95.91 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 95.9 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 95.89 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 95.88 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 95.87 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 95.87 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 95.84 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 95.84 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 95.81 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 95.81 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 95.8 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 95.8 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 95.76 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 95.75 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 95.74 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 95.74 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 95.73 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 95.65 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 95.64 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 95.59 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 95.58 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 95.57 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 95.55 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 95.52 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 95.51 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 95.51 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 95.49 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 95.46 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 95.46 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 95.46 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 95.43 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 95.41 | |
| d1n1ea1 | 160 | Glycerol-3-phosphate dehydrogenase {Trypanosome (L | 95.37 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 95.36 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 95.31 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 95.29 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 95.27 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 95.25 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 95.18 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 95.17 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.08 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 95.07 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 95.05 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 95.02 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 95.01 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 94.95 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 94.93 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 94.92 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 94.88 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 94.87 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 94.84 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 94.83 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 94.78 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 94.78 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 94.75 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 94.73 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 94.71 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 94.64 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 94.63 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 94.63 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 94.6 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 94.59 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 94.58 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 94.48 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 94.48 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 94.48 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 94.46 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 94.43 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 94.42 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 94.38 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 94.32 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 94.26 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 94.24 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 94.14 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 94.08 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 94.06 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 94.02 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 93.99 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 93.99 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 93.95 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 93.94 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 93.92 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 93.8 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 93.79 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 93.72 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 93.58 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 93.52 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 93.46 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 93.45 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 93.23 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 93.23 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 93.21 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 93.19 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 93.12 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 93.03 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 93.0 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 92.65 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 92.51 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 92.49 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 92.39 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 91.82 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 91.55 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 91.42 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 91.34 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 91.08 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 91.03 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 90.93 | |
| d1dxha2 | 185 | Ornithine transcarbamoylase {Pseudomonas aeruginos | 90.81 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 90.6 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 90.45 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 90.44 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 90.42 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 90.41 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 90.38 | |
| d1w5fa1 | 194 | Cell-division protein FtsZ {Thermotoga maritima [T | 90.21 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 90.15 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 90.0 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 89.87 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 89.65 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 89.64 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 89.43 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 89.41 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 89.38 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 89.31 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 89.27 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 89.26 | |
| d1dlja3 | 108 | UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD | 89.25 | |
| d2nu7a1 | 119 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 89.23 | |
| d2h1qa1 | 251 | Hypothetical protein Dhaf_3308 {Desulfitobacterium | 89.22 | |
| d2vapa1 | 209 | Cell-division protein FtsZ {Archaeon Methanococcus | 89.13 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 89.1 | |
| d2g82a1 | 168 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 89.0 | |
| d1vlva2 | 161 | Ornithine transcarbamoylase {Thermotoga maritima [ | 88.76 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 88.75 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 88.56 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 88.51 | |
| d1pgja1 | 300 | 6-phosphogluconate dehydrogenase (6PGD) {Trypanoso | 88.37 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 88.31 | |
| d2pgda1 | 297 | 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ov | 88.25 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 87.91 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 87.9 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 87.6 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 87.59 | |
| d1gtma1 | 239 | Glutamate dehydrogenase {Archaeon Pyrococcus furio | 87.55 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 87.44 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 87.36 | |
| d1vl6a1 | 222 | Malate oxidoreductase (malic enzyme) {Thermotoga m | 87.32 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 87.29 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 87.28 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 87.28 | |
| d1ebfa1 | 168 | Homoserine dehydrogenase {Baker's yeast (Saccharom | 87.26 | |
| d1oi7a1 | 121 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 87.11 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 87.01 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 86.99 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 86.99 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 86.97 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 86.93 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 86.82 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 86.65 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 86.46 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 85.72 | |
| d2bw0a2 | 203 | 10-formyltetrahydrofolate dehydrogenase domain 1 { | 85.55 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 85.15 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 85.02 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 84.91 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 84.84 | |
| d1uh5a_ | 329 | Enoyl-ACP reductase {Malaria parasite (Plasmodium | 84.84 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 84.51 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 84.51 | |
| d2gjca1 | 311 | Thiazole biosynthetic enzyme Thi4 {Baker's yeast ( | 84.44 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 84.42 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 84.4 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 84.16 | |
| d1euca1 | 130 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 84.1 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 84.07 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 83.93 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 83.74 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 83.21 | |
| d1kdga1 | 360 | Flavoprotein domain of flavocytochrome cellobiose | 83.03 | |
| d1vkza2 | 90 | Glycinamide ribonucleotide synthetase (GAR-syn), N | 82.75 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 82.71 | |
| d2at2a2 | 151 | Aspartate carbamoyltransferase catalytic subunit { | 82.6 | |
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 82.54 | |
| d1fmta2 | 206 | Methionyl-tRNAfmet formyltransferase {Escherichia | 82.07 | |
| d2ftsa3 | 155 | Gephyrin, domain 5 {Rat (Rattus norvegicus) [TaxId | 82.03 | |
| d1pg5a2 | 153 | Aspartate carbamoyltransferase catalytic subunit { | 81.67 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 81.53 | |
| d1onfa1 | 259 | Glutathione reductase {Plasmodium falciparum [TaxI | 81.27 | |
| d1ml4a2 | 157 | Aspartate carbamoyltransferase catalytic subunit { | 81.0 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 80.93 | |
| d1rq2a1 | 198 | Cell-division protein FtsZ {Mycobacterium tubercul | 80.9 | |
| d1q7ra_ | 202 | Hypothetical protein YaaE {Bacillus stearothermoph | 80.74 | |
| d1obfo1 | 173 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 80.32 |
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.98 E-value=2.6e-32 Score=226.95 Aligned_cols=161 Identities=44% Similarity=0.635 Sum_probs=149.2
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCCcc
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGL 125 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~~~ 125 (355)
|||||||+|+||.+||++|+++||+|++|||++++++.+.+.+...+.++.|+++++|+||+|||++.++++++....++
T Consensus 1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~~~~~~~ 80 (161)
T d1vpda2 1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI 80 (161)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhhhhcccHHHHHhCCCeEEEEcCCHHHHHHHHhCCcch
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999776666
Q ss_pred ccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecCCHHHHHHHHH
Q 018506 126 LQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKP 205 (355)
Q Consensus 126 l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg~~~~~~~v~~ 205 (355)
+... .++++|||+||+.|++.+++.+.+.+ . +++|+++|++|++..+..|++++|+||+++.++++++
T Consensus 81 ~~~~--~~g~iiid~sT~~p~~~~~~~~~~~~------~----g~~~vdapv~gg~~~a~~g~l~~~~gG~~~~~~~~~~ 148 (161)
T d1vpda2 81 IEGA--KPGTVLIDMSSIAPLASREISDALKA------K----GVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYD 148 (161)
T ss_dssp HHHC--CTTCEEEECSCCCHHHHHHHHHHHHT------T----TCEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHH
T ss_pred hhcc--CCCCEEEECCCCCHHHHHHHHHHHHH------c----CCceecccccCChhHHhcCCeEEEEcCCHHHHHHHHH
Confidence 6543 36789999999999999999988864 1 3899999999999999999999999999999999999
Q ss_pred HHHHcCCCeEEeC
Q 018506 206 LFLSMGKNTIYCG 218 (355)
Q Consensus 206 ll~~~g~~~~~~g 218 (355)
+|+.++.+++|+|
T Consensus 149 il~~~~~~i~~~G 161 (161)
T d1vpda2 149 LMKAMAGSVVHTG 161 (161)
T ss_dssp HHHTTEEEEEEEE
T ss_pred HHHHhcCceEECC
Confidence 9999999999886
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.97 E-value=5.3e-31 Score=219.19 Aligned_cols=162 Identities=43% Similarity=0.699 Sum_probs=149.6
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCCc
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNG 124 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~~ 124 (355)
|+||||||+|.||++||++|.++||+|.+|||++++.+.+...+.....++.|++..+|+|++|+|++.++++++....+
T Consensus 1 M~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~diii~~v~~~~~~~~v~~~~~~ 80 (162)
T d3cuma2 1 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDG 80 (162)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTSCSEEEECCSCHHHHHHHHHSTTC
T ss_pred CCEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhhhccccchhhhhccccCeeeecccchhhHHHHHhcccc
Confidence 57899999999999999999999999999999999999999999988999999999999999999999999999887766
Q ss_pred cccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecCCHHHHHHHH
Q 018506 125 LLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAK 204 (355)
Q Consensus 125 ~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg~~~~~~~v~ 204 (355)
+.... .++++|||+||+.|+++.++.+.+.+. +++|+++|++|++..+..|++++|+||+++++++++
T Consensus 81 ~~~~l--~~g~iiid~st~~p~~~~~~~~~~~~~----------gi~~~dapv~Gg~~~a~~G~l~~~~gG~~~~~~~~~ 148 (162)
T d3cuma2 81 LLAHI--APGTLVLECSTIAPTSARKIHAAARER----------GLAMLDAPVSGGTAGAAAGTLTFMVGGDAEALEKAR 148 (162)
T ss_dssp HHHHS--CTTCEEEECSCCCHHHHHHHHHHHHHT----------TCEEEECCEESCHHHHHHTCEEEEEESCHHHHHHHH
T ss_pred ccccC--CCCCEEEECCCCCHHHHHHHHHHHHHC----------CCcEEecccccCccccccCCeEEEecCCHHHHHHHH
Confidence 66542 367899999999999999999988642 389999999999999999999999999999999999
Q ss_pred HHHHHcCCCeEEeC
Q 018506 205 PLFLSMGKNTIYCG 218 (355)
Q Consensus 205 ~ll~~~g~~~~~~g 218 (355)
++|+.++++++|+|
T Consensus 149 ~il~~~~~~v~~~G 162 (162)
T d3cuma2 149 PLFEAMGRNIFHAG 162 (162)
T ss_dssp HHHHHHEEEEEEEE
T ss_pred HHHHHHcCccEECc
Confidence 99999999999986
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=99.94 E-value=2.9e-27 Score=199.11 Aligned_cols=155 Identities=17% Similarity=0.270 Sum_probs=134.3
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCC--------CCCCCHHHHhhcCCEEEEeCCCchHHH
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGV--------PTKETPFEVAEASDVVITMLPSSSHVL 116 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~--------~~~~s~~e~~~~aDiVi~~v~~~~~~~ 116 (355)
+.+|||||+|+||.+||++|.++||+|++|||++++++++.+.+. ....++.+++..+|++++++++++++.
T Consensus 2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~v~ 81 (176)
T d2pgda2 2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVD 81 (176)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHH
T ss_pred CCcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEecCchHHHH
Confidence 357999999999999999999999999999999999999987643 233455667788999999999999999
Q ss_pred HHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecCC
Q 018506 117 DVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGS 196 (355)
Q Consensus 117 ~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg~ 196 (355)
++..++.+.++ +++++||+||+.|.+.+++.+.+.+. +++|+|+|++|++..+..|+ ++|+||+
T Consensus 82 ~v~~~l~~~~~-----~g~iiid~sT~~~~~~~~~~~~~~~~----------g~~~ldapvsGg~~~A~~G~-~~~~gG~ 145 (176)
T d2pgda2 82 NFIEKLVPLLD-----IGDIIIDGGNSEYRDTMRRCRDLKDK----------GILFVGSGVSGGEDGARYGP-SLMPGGN 145 (176)
T ss_dssp HHHHHHHHHCC-----TTCEEEECSCCCHHHHHHHHHHHHHT----------TCEEEEEEEESHHHHHHHCC-EEEEEEC
T ss_pred HHHHHHHhccc-----cCcEEEecCcchhHHHHHHHHHHHhc----------CCceeccccccCcccccCCc-EEEcCCC
Confidence 98876544432 56799999999999999998887641 38999999999999999998 8999999
Q ss_pred HHHHHHHHHHHHHcCCCeE
Q 018506 197 EDAYQAAKPLFLSMGKNTI 215 (355)
Q Consensus 197 ~~~~~~v~~ll~~~g~~~~ 215 (355)
++.+++++++|+.++.++.
T Consensus 146 ~~~~~~~~~il~~~~~kv~ 164 (176)
T d2pgda2 146 KEAWPHIKAIFQGIAAKVG 164 (176)
T ss_dssp TTTHHHHHHHHHHHSCBCT
T ss_pred HHHHHHHHHHHHHHhcccC
Confidence 9999999999999998764
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.93 E-value=4.3e-26 Score=188.03 Aligned_cols=155 Identities=31% Similarity=0.479 Sum_probs=131.8
Q ss_pred eEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCCccc
Q 018506 47 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLL 126 (355)
Q Consensus 47 kIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~~~l 126 (355)
||||||+|+||.+||++|.++||.+ +|+|++++...+.+.+...... .+.+.++|++|+++|++.++..+... ++
T Consensus 2 kIg~IGlG~MG~~ma~~L~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~v~~~~~~---l~ 76 (156)
T d2cvza2 2 KVAFIGLGAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEEFGSEAVP-LERVAEARVIFTCLPTTREVYEVAEA---LY 76 (156)
T ss_dssp CEEEECCSTTHHHHHHHHHTTSCEE-EECSSTHHHHHHHHHHCCEECC-GGGGGGCSEEEECCSSHHHHHHHHHH---HT
T ss_pred eEEEEeHHHHHHHHHHHHHhCCCEE-EEeCCHHHHHHHHHHcCCcccc-cccccceeEEEecccchhhhhhhhcc---cc
Confidence 7999999999999999999998865 6889888887777654444444 45666899999999998888777654 34
Q ss_pred cCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecCCHHHHHHHHHH
Q 018506 127 QGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPL 206 (355)
Q Consensus 127 ~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg~~~~~~~v~~l 206 (355)
.. ..++++++|+||..|++++++.+.+.+ . +++|+|+|++|++..+..|++++|+||+++++++++++
T Consensus 77 ~~--~~~~~~iid~sT~~p~~~~~~~~~~~~------~----gi~~ldapVsGg~~~A~~G~L~~~vgG~~~~~~~~~p~ 144 (156)
T d2cvza2 77 PY--LREGTYWVDATSGEPEASRRLAERLRE------K----GVTYLDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPF 144 (156)
T ss_dssp TT--CCTTEEEEECSCCCHHHHHHHHHHHHT------T----TEEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHGGG
T ss_pred cc--ccccccccccccCCHHHHHHHHHHHHH------c----CCeEEeccccCchhhhccCCEEEEEeCCHHHHHHHHHH
Confidence 33 236789999999999999999998864 1 38999999999999999999999999999999999999
Q ss_pred HHHcCCCeEEeCC
Q 018506 207 FLSMGKNTIYCGG 219 (355)
Q Consensus 207 l~~~g~~~~~~g~ 219 (355)
| .++.+++|+|+
T Consensus 145 L-~~~~~v~~~GP 156 (156)
T d2cvza2 145 L-AYAKKVVHVGP 156 (156)
T ss_dssp C-TTEEEEEEEES
T ss_pred H-HhcCcCEEeCc
Confidence 9 59999999986
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=99.93 E-value=8e-26 Score=190.57 Aligned_cols=162 Identities=19% Similarity=0.316 Sum_probs=137.2
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCC--------CCCHHH---HhhcCCEEEEeCCCchH
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT--------KETPFE---VAEASDVVITMLPSSSH 114 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~--------~~s~~e---~~~~aDiVi~~v~~~~~ 114 (355)
|||||||+|+||.+||++|.++||+|++|||++++.+++.+.+... ..+..+ .+..++.++++++....
T Consensus 2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (178)
T d1pgja2 2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA 81 (178)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecCcch
Confidence 8999999999999999999999999999999999999998755432 223333 34578999999998888
Q ss_pred HHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEec
Q 018506 115 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVG 194 (355)
Q Consensus 115 ~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~g 194 (355)
++.++......+. ++++++|++|..|...+++.+.+.. . ++.|+++|++|++..+..|+ ++|+|
T Consensus 82 ~~~~~~~~~~~~~-----~~~iii~~st~~~~~~~~~~~~l~~------~----~~~~ldapv~g~~~~a~~g~-~~mvg 145 (178)
T d1pgja2 82 TDSTIEQLKKVFE-----KGDILVDTGNAHFKDQGRRAQQLEA------A----GLRFLGMGISGGEEGARKGP-AFFPG 145 (178)
T ss_dssp HHHHHHHHHHHCC-----TTCEEEECCCCCHHHHHHHHHHHHT------T----TCEEEEEEEESHHHHHHHCC-EEEEE
T ss_pred hhhhhhhhhhhcc-----ccceecccCccchhHHHHHHHHHhh------c----ceeEecccccCCcchhcCCc-EEEee
Confidence 8887765443442 5679999999999999999998864 1 38999999999999999998 88999
Q ss_pred CCHHHHHHHHHHHHHcCCCeE----EeCCcchH
Q 018506 195 GSEDAYQAAKPLFLSMGKNTI----YCGGAGNG 223 (355)
Q Consensus 195 g~~~~~~~v~~ll~~~g~~~~----~~g~~g~a 223 (355)
|+++++++++++|+.++.++. |+|..|+|
T Consensus 146 G~~~~~~~v~pil~~~~~~~~~~~~~~g~~G~G 178 (178)
T d1pgja2 146 GTLSVWEEIRPIVEAAAAKADDGRPCVTMNGSG 178 (178)
T ss_dssp ECHHHHHHHHHHHHHHSCBCTTSCBSCCCCCST
T ss_pred CCHHHHHHHHHHHHHHhccccCCCCccCCCCCC
Confidence 999999999999999999888 88988764
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.89 E-value=1.5e-23 Score=171.87 Aligned_cols=150 Identities=21% Similarity=0.235 Sum_probs=122.2
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCCcc
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGL 125 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~~~ 125 (355)
|||||||+|+||++||++|.++||+|++|++++++...+...+.....++.|+++++|+||+|||++...+ ++......
T Consensus 1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~diIi~~v~~~~~~~-~~~~~~~~ 79 (152)
T d1i36a2 1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPGVALG-AARRAGRH 79 (152)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCEECCHHHHHTSSEEEECSCGGGHHH-HHHHHHTT
T ss_pred CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhhcccccccHHHHHhhcCeEEEEecCchHHH-HHHhhccc
Confidence 89999999999999999999999999999998888777776667778899999999999999999875544 44332111
Q ss_pred ccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecCCHHHHHHHHH
Q 018506 126 LQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKP 205 (355)
Q Consensus 126 l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg~~~~~~~v~~ 205 (355)
.+++++|+||..|...+++.+.++. ..|+++|++|++..+..+...++.|++.+.++.
T Consensus 80 -------~~~~~id~st~~p~~~~~l~~~~~~------------~~~~d~~v~g~~~~~~~~~~~~~~G~~~~~~~~--- 137 (152)
T d1i36a2 80 -------VRGIYVDINNISPETVRMASSLIEK------------GGFVDAAIMGSVRRKGADIRIIASGRDAEEFMK--- 137 (152)
T ss_dssp -------CCSEEEECSCCCHHHHHHHHHHCSS------------SEEEEEEECSCHHHHGGGCEEEEESTTHHHHHG---
T ss_pred -------CCceeeccCcCCHHHHHHHHHHHhc------------cCCCcccccCCcccccCCcEEEEECCCHHHHHH---
Confidence 2468999999999999999887642 468999999999888888876666666655543
Q ss_pred HHHHcCCCeEEeCC
Q 018506 206 LFLSMGKNTIYCGG 219 (355)
Q Consensus 206 ll~~~g~~~~~~g~ 219 (355)
|+.+|.++.++|.
T Consensus 138 -l~~~g~~i~~~G~ 150 (152)
T d1i36a2 138 -LNRYGLNIEVRGR 150 (152)
T ss_dssp -GGGGTCEEEECSS
T ss_pred -HHHcCCeeeEcCC
Confidence 7888998988886
|
| >d3cuma1 a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.88 E-value=3.8e-22 Score=159.66 Aligned_cols=132 Identities=43% Similarity=0.718 Sum_probs=120.4
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCCcchh
Q 018506 219 GAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASK 298 (355)
Q Consensus 219 ~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (355)
|.|+|+.+|+++|.+.+.++.+++|++.++++.|+|++.++++++.+++.||..+...+........+..++|.++|++.
T Consensus 1 P~GsG~~~Kl~~N~l~~~~~~a~aEal~la~~~Gld~~~~~eil~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 80 (134)
T d3cuma1 1 PDGAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEIMRRSSGGNWALEVYNPWPGVMENAPASRDYSGGFMAQ 80 (134)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCCHHHHHCCCSTTSSTTSGGGGTTCSSSBHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcccchhhhhhhhhhhhccchhhhcCCCCCCcchH
Confidence 46999999999999999999999999999999999999999999999999998776555444444456678999999999
Q ss_pred hHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHHHHHHHhc
Q 018506 299 LMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 350 (355)
Q Consensus 299 ~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~ 350 (355)
.+.||++++.+++++.|+|+|+.+.+.++|+.+.++|+|+.|++++++.|.+
T Consensus 81 l~~KDl~l~~~~a~~~g~~~p~~~~a~~~~~~a~~~G~g~~D~s~i~~~~e~ 132 (134)
T d3cuma1 81 LMAKDLGLAQEAAQASASSTPMGSLALSLYRLLLKQGYAERDFSVVQKLFDP 132 (134)
T ss_dssp HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHCT
T ss_pred HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999997754
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=99.86 E-value=1.5e-21 Score=162.02 Aligned_cols=157 Identities=12% Similarity=0.201 Sum_probs=121.4
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCC-CCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCCc
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-TKETPFEVAEASDVVITMLPSSSHVLDVYNGPNG 124 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~-~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~~ 124 (355)
|||||||+|+||++||+.|.++||+|++|||+++.++++.+.+.. ...+..++++++|+||+|+|. .++++++.++.+
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIilavp~-~~~~~vl~~l~~ 79 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCTPI-QLILPTLEKLIP 79 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECSCH-HHHHHHHHHHGG
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeecccccccccccccCcH-hhhhhhhhhhhh
Confidence 899999999999999999999999999999999999988887743 444566788999999999996 588888887655
Q ss_pred cccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHh----cCceEEEe---cCCH
Q 018506 125 LLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAE----AGTLTFMV---GGSE 197 (355)
Q Consensus 125 ~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~----~g~~~~~~---gg~~ 197 (355)
.+. ++.+|+++++........+.+.... +...|.+.+|...++..+. .+...+++ ++++
T Consensus 80 ~l~-----~~~iv~~~~s~~~~~~~~~~~~~~~---------~~~~h~~~~~~~~g~~~a~~~l~~~~~~il~~~~~~~~ 145 (165)
T d2f1ka2 80 HLS-----PTAIVTDVASVKTAIAEPASQLWSG---------FIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDP 145 (165)
T ss_dssp GSC-----TTCEEEECCSCCHHHHHHHHHHSTT---------CEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCCH
T ss_pred hcc-----cccceeeccccchHHHHHHHHhhcc---------cccceeeecccccchhhhcccccCCCeEEEEeCCCCCH
Confidence 543 5579999999887766665554321 1124566666665554432 34545554 6799
Q ss_pred HHHHHHHHHHHHcCCCeEEe
Q 018506 198 DAYQAAKPLFLSMGKNTIYC 217 (355)
Q Consensus 198 ~~~~~v~~ll~~~g~~~~~~ 217 (355)
++++.++++|+.+|.+++++
T Consensus 146 ~~~~~v~~l~~~lG~~v~~c 165 (165)
T d2f1ka2 146 EQLACLRSVLEPLGVKIYLC 165 (165)
T ss_dssp HHHHHHHHHHGGGTCEEEEC
T ss_pred HHHHHHHHHHHHhCCEEEeC
Confidence 99999999999999988764
|
| >d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.85 E-value=1.4e-21 Score=156.07 Aligned_cols=125 Identities=29% Similarity=0.427 Sum_probs=115.1
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCCcchh
Q 018506 219 GAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASK 298 (355)
Q Consensus 219 ~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (355)
++|+|+.+|+++|++.+.++.+++|++.++++.|+|+++++++++.+.+.||....+. +. +.+++|.|+|+++
T Consensus 1 dvG~g~~~Kl~nN~l~~~~~~~~aEal~la~~~Gid~~~~~~~l~~~~~~S~~~~~~~--~~-----~~~~~~~~~f~~~ 73 (133)
T d1vpda1 1 DIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKA--PM-----VMDRNFKPGFRID 73 (133)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCCHHHHHHH--HH-----HHTTCCCCSSBHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhccccchhhhhcc--ch-----hhhccCCCCchHH
Confidence 4699999999999999999999999999999999999999999999998888765443 22 3467999999999
Q ss_pred hHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHHHHHHHhc
Q 018506 299 LMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 350 (355)
Q Consensus 299 ~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~ 350 (355)
.+.||++++.+++++.|+|+|+.+.+.+.|+.+.+.|+|+.|++++++++.+
T Consensus 74 l~~KDl~l~~~~a~~~~~~~p~~~~~~~~~~~a~~~G~~~~D~s~i~~~~~~ 125 (133)
T d1vpda1 74 LHIKDLANALDTSHGVGAQLPLTAAVMEMMQALRADGHGNDDHSALACYYEK 125 (133)
T ss_dssp HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998765
|
| >d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.83 E-value=6.3e-21 Score=152.02 Aligned_cols=125 Identities=25% Similarity=0.312 Sum_probs=113.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCCcchhh
Q 018506 220 AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKL 299 (355)
Q Consensus 220 ~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (355)
+|+|+.+|+++|++.+..+.+++|++.++++.|+|+++++++++.+.+.||....+.| . .+..++|.++|+++.
T Consensus 1 VG~g~~~Kl~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~vl~~s~~~s~~~~~~~p--~----~~~~~~~~~~f~~~~ 74 (132)
T d2cvza1 1 VGAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIP--Q----RVLTRAFPKTFALGL 74 (132)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCBHHHHHTHH--H----HTTTSCCCCSSBHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhhhhhhhhhhhhh--H----HHHHHhhhhhhHHHH
Confidence 5899999999999999999999999999999999999999999999888876553322 1 235679999999999
Q ss_pred HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHHHHHHHhc
Q 018506 300 MAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 350 (355)
Q Consensus 300 ~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~ 350 (355)
+.||++++.+.+++.|+|+|+.+.+.++|+.+.+.|+|+.|++++++++.+
T Consensus 75 ~~KDl~l~~~~a~~~g~~~pl~~~~~~~~~~a~~~g~~~~D~s~i~~~~e~ 125 (132)
T d2cvza1 75 LVKDLGIAMGVLDGEKAPSPLLRLAREVYEMAKRELGPDADHVEALRLLER 125 (132)
T ss_dssp HHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHCTTSBGGGGHHHHHH
T ss_pred HhhHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998765
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=99.81 E-value=2e-21 Score=159.13 Aligned_cols=150 Identities=13% Similarity=0.052 Sum_probs=113.0
Q ss_pred EEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCCcccc
Q 018506 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQ 127 (355)
Q Consensus 48 IgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~~~l~ 127 (355)
|||||+|+||++|+.+|.+.++.+.+|+|++++++++.+.+...+.++.++++.+|+||+|||++ ++.+++.++.
T Consensus 2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~~~~~~~~~~~~~~DiVil~v~d~-~i~~v~~~l~---- 76 (153)
T d2i76a2 2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVPDR-YIKTVANHLN---- 76 (153)
T ss_dssp CEEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC---CEEECSCTT-THHHHHTTTC----
T ss_pred EEEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhcccccccchhhhhccCcEEEEeccch-hhhHHHhhhc----
Confidence 89999999999999999776555679999999999999977777778999999999999999975 8888876642
Q ss_pred CCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecCCHHHHHHHHHHH
Q 018506 128 GGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLF 207 (355)
Q Consensus 128 ~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg~~~~~~~v~~ll 207 (355)
.++++++++|+..+.... ... ... +.+++..|..++......+...++++||+++++.+++++
T Consensus 77 ----~~~~ivi~~s~~~~~~~l--~~~-------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~l~ 139 (153)
T d2i76a2 77 ----LGDAVLVHCSGFLSSEIF--KKS-------GRA----SIHPNFSFSSLEKALEMKDQIVFGLEGDERGLPIVKKIA 139 (153)
T ss_dssp ----CSSCCEEECCSSSCGGGG--CSS-------SEE----EEEECSCC--CTTGGGCGGGCCEEECCCTTTHHHHHHHH
T ss_pred ----ccceeeeecccchhhhhh--hhh-------ccc----cceeeeecccccchhhhccCcEEEEeCCHHHHHHHHHHH
Confidence 246799999998875321 111 011 256677777666666666677888999999999999999
Q ss_pred HHcCCCeEEeCC
Q 018506 208 LSMGKNTIYCGG 219 (355)
Q Consensus 208 ~~~g~~~~~~g~ 219 (355)
+.+|.+++++++
T Consensus 140 ~~lG~~~~~i~~ 151 (153)
T d2i76a2 140 EEISGKYFVIPS 151 (153)
T ss_dssp HHHCSCEEECCG
T ss_pred HHHCCcEEEeCC
Confidence 999999998865
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=99.77 E-value=1.2e-18 Score=142.13 Aligned_cols=143 Identities=17% Similarity=0.233 Sum_probs=112.9
Q ss_pred CCCCceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhc
Q 018506 42 SCQFESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYN 120 (355)
Q Consensus 42 ~~~~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~ 120 (355)
+..++||+||| +|.||.+||++|.++||+|++|||++... .++.+..+|++++++|.. ++..++.
T Consensus 6 ~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~-------------~~~~~~~~~~v~~~~~~~-~~~~v~~ 71 (152)
T d2pv7a2 6 NSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAV-------------AESILANADVVIVSVPIN-LTLETIE 71 (152)
T ss_dssp CTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGG-------------HHHHHTTCSEEEECSCGG-GHHHHHH
T ss_pred CCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccccc-------------cchhhhhccccccccchh-hheeeee
Confidence 34678999999 99999999999999999999999986543 345678999999999865 6666766
Q ss_pred CCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceE-EeCCCCCChHHHhcCceEEEe-cCCHH
Q 018506 121 GPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVM-LDAPVSGGVLAAEAGTLTFMV-GGSED 198 (355)
Q Consensus 121 ~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~-~~~pv~g~~~~~~~g~~~~~~-gg~~~ 198 (355)
...+.++ ++++++|++|+++...+.+.+... ..| ..+|++|+......++..+++ +++++
T Consensus 72 ~~~~~~~-----~~~iiiD~~Svk~~~~~~~~~~~~-------------~~~v~~hP~~Gp~~~~~~g~~~v~~~g~~~~ 133 (152)
T d2pv7a2 72 RLKPYLT-----ENMLLADLTSVKREPLAKMLEVHT-------------GAVLGLHPMFGADIASMAKQVVVRCDGRFPE 133 (152)
T ss_dssp HHGGGCC-----TTSEEEECCSCCHHHHHHHHHHCS-------------SEEEEEEECSCTTCSCCTTCEEEEEEEECGG
T ss_pred ccccccc-----CCceEEEecccCHHHHHHHHHHcc-------------CCEEEecccCCCcccccCCcEEEEecCCCHH
Confidence 6544442 567999999999988877766432 233 457888877766677766655 67888
Q ss_pred HHHHHHHHHHHcCCCeEE
Q 018506 199 AYQAAKPLFLSMGKNTIY 216 (355)
Q Consensus 199 ~~~~v~~ll~~~g~~~~~ 216 (355)
.++++.++|+.+|.+++.
T Consensus 134 ~~~~~~~ll~~~Ga~v~e 151 (152)
T d2pv7a2 134 RYEWLLEQIQIWGAKIYQ 151 (152)
T ss_dssp GTHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHhCCEEEe
Confidence 999999999999998764
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.74 E-value=1.7e-17 Score=141.70 Aligned_cols=167 Identities=14% Similarity=0.108 Sum_probs=121.1
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCC--------------------CCCCCCHHHHhhcCCEE
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG--------------------VPTKETPFEVAEASDVV 105 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g--------------------~~~~~s~~e~~~~aDiV 105 (355)
|||+|||+|.+|.++|..|+++||+|++||.++++++.+++.. ...+++..++++++|++
T Consensus 1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~d~i 80 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS 80 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHhhCCEE
Confidence 8999999999999999999999999999999999999887532 24567888999999999
Q ss_pred EEeCCCch---------HHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCC
Q 018506 106 ITMLPSSS---------HVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAP 176 (355)
Q Consensus 106 i~~v~~~~---------~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p 176 (355)
|+|||+|. .+.+++..+...++. ..++.+||..||+.|.+++.+...+.+.......+ .++.+..+|
T Consensus 81 ~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~--~~~~~liii~STv~pGtt~~~~~~~l~~~~~~~~~--~~~~~~~~P 156 (202)
T d1mv8a2 81 FICVGTPSKKNGDLDLGYIETVCREIGFAIRE--KSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAG--VDFGVGTNP 156 (202)
T ss_dssp EECCCCCBCTTSSBCCHHHHHHHHHHHHHHTT--CCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBT--TTBEEEECC
T ss_pred EEecCccccccccccchhhhhhhhhhhheeec--ccCCcceeeccccCCcchhhhhhhhhhcccccccc--ccccchhhh
Confidence 99999862 334444433333332 12557999999999999988766543221111111 246778888
Q ss_pred CC---CChHHHhcCceEEEecC-CHHHHHHHHHHHHHcCCCeEE
Q 018506 177 VS---GGVLAAEAGTLTFMVGG-SEDAYQAAKPLFLSMGKNTIY 216 (355)
Q Consensus 177 v~---g~~~~~~~g~~~~~~gg-~~~~~~~v~~ll~~~g~~~~~ 216 (355)
.+ |...........+++|+ +++..+.++++|+.+...++.
T Consensus 157 E~~~~G~a~~d~~~~~~iViG~~~~~~~~~~~~ly~~i~~~ii~ 200 (202)
T d1mv8a2 157 EFLRESTAIKDYDFPPMTVIGELDKQTGDLLEEIYRELDAPIIR 200 (202)
T ss_dssp CCCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTSSSCEEE
T ss_pred hhhcccchhhhhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeEe
Confidence 76 44444334444556665 788999999999999876653
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.74 E-value=2.9e-17 Score=133.79 Aligned_cols=145 Identities=17% Similarity=0.187 Sum_probs=105.4
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh-CCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCCc
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNG 124 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~-~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~~ 124 (355)
|||||||+|+||++|+++|.++||++++|+|++++.+.+.+ .|+..+.++.++++.+|+||+||+ |+.+++++..+.
T Consensus 1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~~dvIilavk-p~~~~~vl~~l~- 78 (152)
T d2ahra2 1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK-PQLFETVLKPLH- 78 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC-GGGHHHHHTTSC-
T ss_pred CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccccceeeechhhhhhhccceeeeecc-hHhHHHHhhhcc-
Confidence 89999999999999999999999999999999999998865 588889999999999999999997 578888876531
Q ss_pred cccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEE-eCCCCCChHHHhcCceEEEecC---CHHHH
Q 018506 125 LLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML-DAPVSGGVLAAEAGTLTFMVGG---SEDAY 200 (355)
Q Consensus 125 ~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~-~~pv~g~~~~~~~g~~~~~~gg---~~~~~ 200 (355)
+++++++..++.. ...+.+.+... ..++ ..|.. +.....+. +.+.++ +++..
T Consensus 79 --------~~~~iis~~agi~--~~~l~~~l~~~-----------~~ivr~mPN~--~~~v~~g~-~~~~~~~~~~~~~~ 134 (152)
T d2ahra2 79 --------FKQPIISMAAGIS--LQRLATFVGQD-----------LPLLRIMPNM--NAQILQSS-TALTGNALVSQELQ 134 (152)
T ss_dssp --------CCSCEEECCTTCC--HHHHHHHHCTT-----------SCEEEEECCG--GGGGTCEE-EEEEECTTCCHHHH
T ss_pred --------cceeEeccccccc--HHHHHhhhccc-----------ccchhhccch--hhhcCccc-eEEEeCCCCCHHHH
Confidence 3457776655542 24466665421 1121 12321 11112233 334333 68899
Q ss_pred HHHHHHHHHcCCCeEEe
Q 018506 201 QAAKPLFLSMGKNTIYC 217 (355)
Q Consensus 201 ~~v~~ll~~~g~~~~~~ 217 (355)
+.++++|+.+|+ ++.+
T Consensus 135 ~~v~~l~~~~G~-~~~v 150 (152)
T d2ahra2 135 ARVRDLTDSFGS-TFDI 150 (152)
T ss_dssp HHHHHHHHTTEE-EEEC
T ss_pred HHHHHHHHhCCC-EEEe
Confidence 999999999997 4444
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.72 E-value=8.3e-17 Score=133.61 Aligned_cols=159 Identities=16% Similarity=0.234 Sum_probs=116.4
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCC--cEEEEeCChhHHHHHHhCCCC--CCCCHHHH-hhcCCEEEEeCCCchHHHHHh
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMKMFSDMGVP--TKETPFEV-AEASDVVITMLPSSSHVLDVY 119 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~--~V~v~dr~~~~~~~l~~~g~~--~~~s~~e~-~~~aDiVi~~v~~~~~~~~vl 119 (355)
|.||+|||+|.||..||++|.++|+ +|++||++++..+.+.+.+.. ..++..+. ..++|+||+|+|. +.+.+++
T Consensus 1 Mk~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~p~-~~~~~vl 79 (171)
T d2g5ca2 1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPV-RTFREIA 79 (171)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCH-HHHHHHH
T ss_pred CCEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccCCc-hhhhhhh
Confidence 4579999999999999999999996 689999999999988887653 23444443 3479999999995 5778888
Q ss_pred cCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHH----hcCceEEEe--
Q 018506 120 NGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAA----EAGTLTFMV-- 193 (355)
Q Consensus 120 ~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~----~~g~~~~~~-- 193 (355)
.++.+.+. ++.+++|++++.....+.+.+.+.... . +.|.+.++...++..+ ..+...+++
T Consensus 80 ~~l~~~~~-----~~~ii~d~~s~k~~~~~~~~~~~~~~~----i----~~hPm~G~e~sG~~~a~~~Lf~g~~~il~p~ 146 (171)
T d2g5ca2 80 KKLSYILS-----EDATVTDQGSVKGKLVYDLENILGKRF----V----GGHPIAGTEKSGVEYSLDNLYEGKKVILTPT 146 (171)
T ss_dssp HHHHHHSC-----TTCEEEECCSCCTHHHHHHHHHHGGGE----E----CEEEECCCSCCSGGGCCSSTTTTCEEEECCC
T ss_pred hhhhcccc-----ccccccccccccHHHHHHHHHhhcccc----c----ccccccccccccHHHHHHHhhCCCeEEEecC
Confidence 77655543 567999999999888777777665311 1 1333333333344433 245555665
Q ss_pred -cCCHHHHHHHHHHHHHcCCCeEEe
Q 018506 194 -GGSEDAYQAAKPLFLSMGKNTIYC 217 (355)
Q Consensus 194 -gg~~~~~~~v~~ll~~~g~~~~~~ 217 (355)
..+++.++.++++++.+|.+++++
T Consensus 147 ~~~~~~~~~~v~~~~~~lG~~v~~M 171 (171)
T d2g5ca2 147 KKTDKKRLKLVKRVWEDVGGVVEYM 171 (171)
T ss_dssp SSSCHHHHHHHHHHHHHTTCEEEEC
T ss_pred CCCCHHHHHHHHHHHHHcCCEEEeC
Confidence 348899999999999999887653
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=99.70 E-value=3e-17 Score=133.73 Aligned_cols=145 Identities=21% Similarity=0.257 Sum_probs=102.8
Q ss_pred ceEEEEcccHHhHHHHHHHHHCC-CcEEEEeCChhHHHHHHh-CCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCC
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCNVMKMFSD-MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPN 123 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G-~~V~v~dr~~~~~~~l~~-~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~ 123 (355)
|||||||+|+||.+|+.+|.++| ++|.+|||++++.+.+.+ .++...++.++ +.++|+||+|++ |+++++++.++.
T Consensus 1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~-v~~~Div~lavk-P~~~~~v~~~l~ 78 (152)
T d1yqga2 1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPE-LHSDDVLILAVK-PQDMEAACKNIR 78 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCC-CCTTSEEEECSC-HHHHHHHHTTCC
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhccccccccccc-ccccceEEEecC-HHHHHHhHHHHh
Confidence 89999999999999999999888 899999999999999877 56776666655 568999999998 678999887642
Q ss_pred ccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecC--CHHHHH
Q 018506 124 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG--SEDAYQ 201 (355)
Q Consensus 124 ~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg--~~~~~~ 201 (355)
+ .++++++...+.+. ..+++.++... .. ...+++.|. ....|...+..+. +++..+
T Consensus 79 ~--------~~~~viS~~ag~~~--~~l~~~l~~~~---~i----ir~mpn~p~-----~~~~g~t~~~~~~~~~~~~~~ 136 (152)
T d1yqga2 79 T--------NGALVLSVAAGLSV--GTLSRYLGGTR---RI----VRVMPNTPG-----KIGLGVSGMYAEAEVSETDRR 136 (152)
T ss_dssp C--------TTCEEEECCTTCCH--HHHHHHTTSCC---CE----EEEECCGGG-----GGTCEEEEEECCTTSCHHHHH
T ss_pred h--------cccEEeecccCCCH--HHHHHHhCcCc---ce----Eeecccchh-----HhcCCcEEEEeCCCCCHHHHH
Confidence 1 34578777665543 45666653210 00 012333333 2234443333332 588899
Q ss_pred HHHHHHHHcCCCe
Q 018506 202 AAKPLFLSMGKNT 214 (355)
Q Consensus 202 ~v~~ll~~~g~~~ 214 (355)
.++++|+.+|+.+
T Consensus 137 ~v~~l~~~~G~~~ 149 (152)
T d1yqga2 137 IADRIMKSVGLTV 149 (152)
T ss_dssp HHHHHHHTTEEEE
T ss_pred HHHHHHHhCCCEE
Confidence 9999999999643
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=99.65 E-value=1.8e-17 Score=139.76 Aligned_cols=162 Identities=10% Similarity=0.112 Sum_probs=115.0
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCC--------------CCCCCCHHHHhhcCCEEEEe
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG--------------VPTKETPFEVAEASDVVITM 108 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g--------------~~~~~s~~e~~~~aDiVi~~ 108 (355)
+.|.||+|||+|.||+++|..|+++||+|++|+|+++.++.+++.+ +.+++++.++++++|+||++
T Consensus 5 ~~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~iiia 84 (189)
T d1n1ea2 5 LYLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFV 84 (189)
T ss_dssp CCEEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSCEEEC
T ss_pred ceeceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccCCCCEEEEc
Confidence 4566899999999999999999999999999999999999887532 34567889999999999999
Q ss_pred CCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCC-HHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcC
Q 018506 109 LPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID-PQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAG 187 (355)
Q Consensus 109 v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~-~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g 187 (355)
+|. +.+++++..+.+........++..++.++.+. +.+...+.+.+.+. +.. ..+.++.+|.+.........
T Consensus 85 vPs-~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKGie~~t~~~~seii~e~-~~~-----~~~~vlsGP~~A~Ev~~~~p 157 (189)
T d1n1ea2 85 IPT-QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEF-LPS-----PLLSVLAGPSFAIEVATGVF 157 (189)
T ss_dssp SCH-HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTT-SCG-----GGEEEEESSCCHHHHHTTCC
T ss_pred CcH-HHHHHHHHHHHhhhhhhhccCCcEEEEEECCCccCCccchhhHHHHH-hcc-----cceEEEecCCcHHHHHcCCC
Confidence 996 58888887655432100001234567776654 44434455554321 111 12567889987655555555
Q ss_pred ceEEEecCCHHHHHHHHHHHHHcC
Q 018506 188 TLTFMVGGSEDAYQAAKPLFLSMG 211 (355)
Q Consensus 188 ~~~~~~gg~~~~~~~v~~ll~~~g 211 (355)
+..++.+.+.+..+.++++|+.-.
T Consensus 158 t~~viAs~~~~~a~~i~~lfst~~ 181 (189)
T d1n1ea2 158 TCVSIASADINVARRLQRIMSTGD 181 (189)
T ss_dssp EEEEEECSSHHHHHHHHHHHSCTT
T ss_pred cEEEEEeCCHHHHHHHHHHhCCCC
Confidence 556666778999999999998544
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.62 E-value=5e-16 Score=129.95 Aligned_cols=157 Identities=20% Similarity=0.192 Sum_probs=107.7
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeC--ChhHHHHHHhCC-------------CCCCCCHHHHhhcCCEEEEeCC
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDV--NCNVMKMFSDMG-------------VPTKETPFEVAEASDVVITMLP 110 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr--~~~~~~~l~~~g-------------~~~~~s~~e~~~~aDiVi~~v~ 110 (355)
|||+|||+|.||+++|..|+++||+|.+|.| +++.++.+++.+ +..++++.++++++|+||+++|
T Consensus 1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~avp 80 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS 80 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhcccc
Confidence 8999999999999999999999999999998 455577776532 2345778899999999999999
Q ss_pred CchHHHHHhcCCCccccCCCCCCCeEEEEcCCCC-HHHH--HHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcC
Q 018506 111 SSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID-PQTS--RNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAG 187 (355)
Q Consensus 111 ~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~-~~~~--~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g 187 (355)
. +.+++++.++.+.++ + +.++.++.+. +... ..+.+.+.+. .........++.+|.+.........
T Consensus 81 s-~~~~~~~~~l~~~l~-----~-~~ii~~tkg~~~~~~~~~~~~~~~~~~----~~~~~~~~~vlsGP~~A~Ei~~~~p 149 (180)
T d1txga2 81 T-DGVLPVMSRILPYLK-----D-QYIVLISKGLIDFDNSVLTVPEAVWRL----KHDLRERTVAITGPAIAREVAKRMP 149 (180)
T ss_dssp G-GGHHHHHHHHTTTCC-----S-CEEEECCCSEEEETTEEEEHHHHHHTT----STTCGGGEEEEESSCCHHHHHTTCC
T ss_pred h-hhhHHHHHhhccccc-----c-ceecccccCccccccccccchHHHHhh----hcccccceeEEcCCccHHHHHcCCC
Confidence 6 589999988776663 2 3444444442 1111 1122333211 0110112467889987665555555
Q ss_pred ceEEEecCCHHHHHHHHHHHHHcCCC
Q 018506 188 TLTFMVGGSEDAYQAAKPLFLSMGKN 213 (355)
Q Consensus 188 ~~~~~~gg~~~~~~~v~~ll~~~g~~ 213 (355)
+..++++.+.+..+.++++|+.-..+
T Consensus 150 t~~vias~~~~~a~~i~~~f~~~~fr 175 (180)
T d1txga2 150 TTVVFSSPSESSANKMKEIFETEYFG 175 (180)
T ss_dssp EEEEEECSCHHHHHHHHHHHCBTTEE
T ss_pred cEEEEEcCCHHHHHHHHHHHCCCCEE
Confidence 55677778899999999999754333
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=1.7e-15 Score=127.84 Aligned_cols=159 Identities=14% Similarity=0.233 Sum_probs=110.8
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh-----------CC------------------CCCCC
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----------MG------------------VPTKE 93 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~-----------~g------------------~~~~~ 93 (355)
+...||+|||+|.||+.||..++.+||+|++||++++.++...+ .+ +..++
T Consensus 2 ~~IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~ 81 (192)
T d1f0ya2 2 IIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATST 81 (192)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEES
T ss_pred ceeEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccc
Confidence 34578999999999999999999999999999999986543221 12 23466
Q ss_pred CHHHHhhcCCEEEEeCCCchHHHH-HhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceE
Q 018506 94 TPFEVAEASDVVITMLPSSSHVLD-VYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVM 172 (355)
Q Consensus 94 s~~e~~~~aDiVi~~v~~~~~~~~-vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~ 172 (355)
+..+++.++|+|+-|++.+-.++. ++..+..... ++.++...|+..+. .++.+.+.. ..++-+.||
T Consensus 82 d~~~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~-----~~~ilasnTS~l~i--~~la~~~~~------p~r~ig~Hf 148 (192)
T d1f0ya2 82 DAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAA-----EHTIFASNTSSLQI--TSIANATTR------QDRFAGLHF 148 (192)
T ss_dssp CHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSC-----TTCEEEECCSSSCH--HHHHTTSSC------GGGEEEEEE
T ss_pred hhHhhhcccceehhhcccchhHHHHHHHHHhhhcc-----cCceeeccCccccc--chhhhhccC------HhHEEeecc
Confidence 778889999999999999888775 5544444443 34444433333222 234443321 222334789
Q ss_pred EeCCCCCChHHHhcCceEEEecCCHHHHHHHHHHHHHcCCCeEEeCC
Q 018506 173 LDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGG 219 (355)
Q Consensus 173 ~~~pv~g~~~~~~~g~~~~~~gg~~~~~~~v~~ll~~~g~~~~~~g~ 219 (355)
.++|..........+..+ +++.++.+..+++.+|+.++.+.+
T Consensus 149 fnP~~~~~lVEIv~g~~T-----~~~~i~~~~~~~~~lgk~pV~v~D 190 (192)
T d1f0ya2 149 FNPVPVMKLVEVIKTPMT-----SQKTFESLVDFSKALGKHPVSCKD 190 (192)
T ss_dssp CSSTTTCCEEEEECCTTC-----CHHHHHHHHHHHHHTTCEEEEECS
T ss_pred ccccCcccEEEEcCCCCC-----CHHHHHHHHHHHHHcCCEEEEeec
Confidence 988765554444444444 899999999999999999887755
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Probab=99.50 E-value=3.9e-15 Score=128.70 Aligned_cols=156 Identities=12% Similarity=0.038 Sum_probs=121.2
Q ss_pred ceEEEEcccH--HhHHHHH------HHHHCCCcEEEEeCChhHH-HHHHhC-----------------------------
Q 018506 46 ESVGFIGLGN--MGFRMAS------NLMKAGYKMAVHDVNCNVM-KMFSDM----------------------------- 87 (355)
Q Consensus 46 mkIgiIG~G~--mG~~ia~------~L~~~G~~V~v~dr~~~~~-~~l~~~----------------------------- 87 (355)
.++.++|+|. ||..++. +|++.|+.|++.|.+++++ +.+.+.
T Consensus 41 ~~~~~~gagl~~~~~gi~~v~vs~~~fa~~g~~v~~~d~d~~~v~~~~~~g~~~i~~p~l~~~v~~~~~~~~~~~~~~~~ 120 (242)
T d2b0ja2 41 HSSITYGAELLHLVPDVKEVIVSDPCFAEEPGLVVIDEFDPKEVMEAHLSGNPESIMPKIREVVKAKAKELPKPPKACIH 120 (242)
T ss_dssp CHHHHHHHHHHHHCTTCCEEEEECGGGGSSSEEEECCCSCHHHHHHHHHTTCGGGTHHHHHHHHHHHHHTSCCTTTEEEE
T ss_pred eeeeeeeecHHhhhhchhhhhccchhhhhcCCeEEEEeCCHHHHHHHHhcCCchhhcchHHHHHHHHHHhccCCccchhh
Confidence 5688999997 8888888 7899999999999998764 333221
Q ss_pred -------CCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchh
Q 018506 88 -------GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCIL 160 (355)
Q Consensus 88 -------g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~ 160 (355)
|+.+++|+.|+++++|+||+|+|+++.+++++.++.+.++ ++.+|+|+||+++....++.+.+.+
T Consensus 121 ~~~pEe~Gv~v~~d~~Eav~~ADiII~~vP~~~~v~~Vi~~I~~~l~-----~g~Iiid~STi~~~~~~~l~e~l~~--- 192 (242)
T d2b0ja2 121 LVHPEDVGLKVTSDDREAVEGADIVITWLPKGNKQPDIIKKFADAIP-----EGAIVTHACTIPTTKFAKIFKDLGR--- 192 (242)
T ss_dssp SSCGGGGTCEEESCHHHHHTTCSEEEECCTTCTTHHHHHHHHGGGSC-----TTCEEEECSSSCHHHHHHHHHHTTC---
T ss_pred cCCHHHCCCEEECCHHHHHhcCCeEEEeeecHHHHHHHHHHHHhhCC-----CCcEEEecCCCcHHHHHHHHHhccc---
Confidence 3566799999999999999999998888899877555543 5689999999999998888887653
Q ss_pred hhccCCCCCceEEeCCCCCChHHHhcCceEEEecCCHHHHHHHHHHHHHcCCCeEEe
Q 018506 161 KEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYC 217 (355)
Q Consensus 161 ~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg~~~~~~~v~~ll~~~g~~~~~~ 217 (355)
. +++|+..+.++++ ......+.++.+++++.++++.++|+.+|++++.+
T Consensus 193 ---k----gi~vi~~hp~a~p-e~~g~~li~~~~aseE~iekv~elles~Gk~~~vv 241 (242)
T d2b0ja2 193 ---E----DLNITSYHPGCVP-EMKGQVYIAEGYASEEAVNKLYEIGKIARGKAFKM 241 (242)
T ss_dssp ---T----TSEEEECBCSSCT-TTCCCEEEEESSSCHHHHHHHHHHHHHHHSCEEEE
T ss_pred ---C----CCEEECCCccCcC-ccccceEEecCCCCHHHHHHHHHHHHHHCCCeEeC
Confidence 1 3677766555443 33334545666789999999999999999987654
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=99.47 E-value=2e-14 Score=120.54 Aligned_cols=157 Identities=15% Similarity=0.161 Sum_probs=104.4
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh-----------CC-------------CCCCCCHHHHh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----------MG-------------VPTKETPFEVA 99 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~-----------~g-------------~~~~~s~~e~~ 99 (355)
...||+|||+|.||+.+|..++.+|++|++||++++.++...+ .+ +..+.+. +.+
T Consensus 3 ~I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 81 (186)
T d1wdka3 3 DVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDF 81 (186)
T ss_dssp CCSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTG
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeeccccc-ccc
Confidence 4578999999999999999999999999999999987654322 11 2223333 346
Q ss_pred hcCCEEEEeCCCchHHHH-HhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCC
Q 018506 100 EASDVVITMLPSSSHVLD-VYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVS 178 (355)
Q Consensus 100 ~~aDiVi~~v~~~~~~~~-vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~ 178 (355)
.++|+||.++|.+-.++. ++.++..+.. ++.++...|++.+. ..+.+.+.. ..++.+.||.++|..
T Consensus 82 ~~adlViEav~E~l~~K~~lf~~l~~~~~-----~~~IiaSnTS~l~i--~~la~~~~~------p~r~~g~Hf~nP~~~ 148 (186)
T d1wdka3 82 GNVDLVVEAVVENPKVKQAVLAEVENHVR-----EDAILASNTSTISI--SLLAKALKR------PENFVGMHFFNPVHM 148 (186)
T ss_dssp GGCSEEEECCCSCHHHHHHHHHHHHTTSC-----TTCEEEECCSSSCH--HHHGGGCSC------GGGEEEEECCSSTTT
T ss_pred cccceeeeeecchHHHHHHHHHHHHhhcC-----CCeeEEeccccccH--HHHHHhccC------chheEeeccccCccc
Confidence 799999999999987775 4444444442 44555444443333 334443321 112234788777654
Q ss_pred CChHHHhcCceEEEecCCHHHHHHHHHHHHHcCCCeEEeCC
Q 018506 179 GGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGG 219 (355)
Q Consensus 179 g~~~~~~~g~~~~~~gg~~~~~~~v~~ll~~~g~~~~~~g~ 219 (355)
........+.-+ +++.++.+..+++.+|+.++.+.+
T Consensus 149 ~~lVEiv~~~~T-----~~~~~~~~~~~~~~lgk~pv~v~d 184 (186)
T d1wdka3 149 MPLVEVIRGEKS-----SDLAVATTVAYAKKMGKNPIVVND 184 (186)
T ss_dssp CCEEEEEECSSC-----CHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCeEEECCCCCC-----CHHHHHHHHHHHHHcCCEEEEEec
Confidence 443333333333 899999999999999999887754
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=99.47 E-value=8.5e-14 Score=116.16 Aligned_cols=104 Identities=18% Similarity=0.261 Sum_probs=81.9
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCC---------------CCCCCCHHHHhhcCCEEEEeCC
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG---------------VPTKETPFEVAEASDVVITMLP 110 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g---------------~~~~~s~~e~~~~aDiVi~~v~ 110 (355)
+||+|||+|+||.++|..|+++||+|++|+|++++++.+++.+ ...++++.|+++++|+||+++|
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~v~ 81 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVVP 81 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECSC
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEEEc
Confidence 7899999999999999999999999999999999999887643 1235788999999999999999
Q ss_pred CchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHh
Q 018506 111 SSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVS 156 (355)
Q Consensus 111 ~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~ 156 (355)
.+ .+++++.++.+.+. ++++|+..++..... ..+.+.+.
T Consensus 82 ~~-~~~~~~~~i~~~l~-----~~~~iv~~~g~~~~~-~~~~~~~~ 120 (184)
T d1bg6a2 82 AI-HHASIAANIASYIS-----EGQLIILNPGATGGA-LEFRKILR 120 (184)
T ss_dssp GG-GHHHHHHHHGGGCC-----TTCEEEESSCCSSHH-HHHHHHHH
T ss_pred hh-HHHHHHHHhhhccC-----CCCEEEEeCCCCccH-HHHHHHHH
Confidence 76 78888887777664 455777655554433 33444443
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.44 E-value=2e-13 Score=115.47 Aligned_cols=142 Identities=15% Similarity=0.127 Sum_probs=98.2
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCC------------------CCCCCCHHHHhhcCCEEEE
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG------------------VPTKETPFEVAEASDVVIT 107 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g------------------~~~~~s~~e~~~~aDiVi~ 107 (355)
|||+|||+|.+|.++|..|+ .||+|++||.++++++.++... .....+......++|++++
T Consensus 1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~v 79 (196)
T d1dlja2 1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII 79 (196)
T ss_dssp CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred CEEEEECCChhHHHHHHHHH-CCCcEEEEECCHHHHHHHhhcccccchhhHHHHhhhhhhhhhccchhhhhhhccccccc
Confidence 89999999999999998886 6999999999999998887531 1223455666789999999
Q ss_pred eCCCchH----------HHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCC
Q 018506 108 MLPSSSH----------VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPV 177 (355)
Q Consensus 108 ~v~~~~~----------~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv 177 (355)
|+|++.. ++..... +.. ..++.+++..||..|.+.+++.+.+.. .++...|.
T Consensus 80 ~vpt~~~~~~~~~~~~~v~~~~~~---~~~---~~~~~~iii~Stv~pgt~~~~~~~~~~------------~~~~~~PE 141 (196)
T d1dlja2 80 ATPTNYNSRINYFDTQHVETVIKE---VLS---VNSHATLIIKSTIPIGFITEMRQKFQT------------DRIIFSPE 141 (196)
T ss_dssp CCCCCEETTTTEECCHHHHHHHHH---HHH---HCSSCEEEECSCCCTTHHHHHHHHTTC------------SCEEECCC
T ss_pred cCCccccccCCCcceeEEeehhhh---hhh---cccceeEEeeeecCceeeeeeeeccch------------hhhccchh
Confidence 9998742 1222111 111 124568899999999999888776542 34566776
Q ss_pred C---CChHHHhcCceEEEecCCHHHHHHHHHH
Q 018506 178 S---GGVLAAEAGTLTFMVGGSEDAYQAAKPL 206 (355)
Q Consensus 178 ~---g~~~~~~~g~~~~~~gg~~~~~~~v~~l 206 (355)
+ |...........++.|.+.+..+++..+
T Consensus 142 ~i~~G~ai~d~~~p~riv~G~~~~~~~~~~~~ 173 (196)
T d1dlja2 142 FLRESKALYDNLYPSRIIVSCEENDSPKVKAD 173 (196)
T ss_dssp CCCTTSTTHHHHSCSCEEEECCTTSCHHHHHH
T ss_pred hcchhhhHhhccCCCEEEEeCCHhhHHHHHHH
Confidence 6 5544444555567788765544444333
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=99.23 E-value=1e-12 Score=107.69 Aligned_cols=93 Identities=13% Similarity=0.058 Sum_probs=71.1
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCC-------CCCCCHHHHhhcCCEEEEeCCCchHHHHH
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGV-------PTKETPFEVAEASDVVITMLPSSSHVLDV 118 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~-------~~~~s~~e~~~~aDiVi~~v~~~~~~~~v 118 (355)
|||+|||+|.||+.+|..|+++||+|++|+|++++.+.+...+. ....+..+....+|+||+++|.. +++++
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vka~-~~~~~ 79 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAW-QVSDA 79 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCGG-GHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccccccchhhhhcccceEEEeeccc-chHHH
Confidence 89999999999999999999999999999999876655443221 22344556778999999999975 78887
Q ss_pred hcCCCccccCCCCCCCeEEEEcCCCC
Q 018506 119 YNGPNGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 119 l~~~~~~l~~~~~~~~~ivi~~st~~ 144 (355)
+..+.+.+. ++++|+.+.++.
T Consensus 80 ~~~l~~~~~-----~~~~Iv~~qNG~ 100 (167)
T d1ks9a2 80 VKSLASTLP-----VTTPILLIHNGM 100 (167)
T ss_dssp HHHHHTTSC-----TTSCEEEECSSS
T ss_pred HHhhccccC-----cccEEeeccCcc
Confidence 776555543 445677776654
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=99.01 E-value=3.5e-10 Score=93.57 Aligned_cols=115 Identities=13% Similarity=0.094 Sum_probs=88.5
Q ss_pred ccccCCCCC-CCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCC
Q 018506 33 RRFFSSQVP-SCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPS 111 (355)
Q Consensus 33 ~~~~~~~~~-~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~ 111 (355)
..|.+.... ....++|||||+|.+|..+++.+..-|.+|.+|||++.. .......++++++++||+|++++|.
T Consensus 29 ~~w~~~~~~~~l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~------~~~~~~~~l~ell~~sDiv~~~~pl 102 (181)
T d1qp8a1 29 GDYGRDVEIPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKE------GPWRFTNSLEEALREARAAVCALPL 102 (181)
T ss_dssp TCCCCCSCCCCCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCC------SSSCCBSCSHHHHTTCSEEEECCCC
T ss_pred CCCCCCCCCCcccCceEEEeccccccccceeeeeccccccccccccccc------cceeeeechhhhhhccchhhccccc
Confidence 456655332 345688999999999999999999999999999997642 2344567899999999999999998
Q ss_pred chHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 112 SSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 112 ~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
....+.++.. ..++.+ .++.++||++.+..-..+.+.+.+.+
T Consensus 103 ~~~t~~li~~--~~l~~m--k~~ailIN~~RG~ivd~~aL~~aL~~ 144 (181)
T d1qp8a1 103 NKHTRGLVKY--QHLALM--AEDAVFVNVGRAEVLDRDGVLRILKE 144 (181)
T ss_dssp STTTTTCBCH--HHHTTS--CTTCEEEECSCGGGBCHHHHHHHHHH
T ss_pred cccccccccc--ceeeec--cccceEEeccccccccchhhhhhccc
Confidence 8777666543 345543 36789999998876666777777764
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.95 E-value=4.6e-10 Score=93.48 Aligned_cols=67 Identities=22% Similarity=0.242 Sum_probs=52.0
Q ss_pred ceEEEE-cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCC-------CCCCCCHHHHhhcCCEEEEeCCCc
Q 018506 46 ESVGFI-GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG-------VPTKETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 46 mkIgiI-G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g-------~~~~~s~~e~~~~aDiVi~~v~~~ 112 (355)
|||+|| |+|.||++||+.|+++||+|++|+|++++++.+.+.. .....+........+......+..
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDAAEACDIAVLTIPWE 75 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEEEEEHHHHHHHCSEEEECSCHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEeeccccccchhhhhhhheeee
Confidence 899999 8999999999999999999999999999988876531 112234455555677777776544
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=98.94 E-value=1e-09 Score=91.86 Aligned_cols=117 Identities=14% Similarity=0.155 Sum_probs=87.5
Q ss_pred cccCCCCCCCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCch
Q 018506 34 RFFSSQVPSCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSS 113 (355)
Q Consensus 34 ~~~~~~~~~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~ 113 (355)
+|.+.......-.+|||||+|++|+.+|+.|..-|.+|.+||+....... ..+. ...+++++++++|+|++++|...
T Consensus 32 ~w~~~~g~el~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~~~~--~~~~-~~~~l~~~l~~sDii~~~~plt~ 108 (197)
T d1j4aa1 32 RWAPTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELE--KKGY-YVDSLDDLYKQADVISLHVPDVP 108 (197)
T ss_dssp CCTTCCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHH--HTTC-BCSCHHHHHHHCSEEEECSCCCG
T ss_pred CcCCCcCccccCCeEEEecccccchhHHHhHhhhcccccccCcccccccc--ccee-eeccccccccccccccccCCccc
Confidence 45554444445689999999999999999999999999999987654332 2333 45689999999999999999877
Q ss_pred HHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 114 HVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 114 ~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
..+.++.. ..++.+ .++.++|+++-+..-....+.+.+.+
T Consensus 109 ~T~~li~~--~~l~~m--k~~a~lIN~sRG~ivde~aL~~aL~~ 148 (197)
T d1j4aa1 109 ANVHMIND--ESIAKM--KQDVVIVNVSRGPLVDTDAVIRGLDS 148 (197)
T ss_dssp GGTTCBSH--HHHHHS--CTTEEEEECSCGGGBCHHHHHHHHHH
T ss_pred cccccccH--HHHhhh--CCccEEEecCchhhhhhHHHHHHHhc
Confidence 66665443 234432 36789999999887666777777764
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=98.90 E-value=4.3e-10 Score=93.92 Aligned_cols=110 Identities=17% Similarity=0.179 Sum_probs=85.2
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
..-++|||||+|++|..+|+.+..-|.+|.+||+....- .....+.....+++++++.||+|++++|-....+.++..
T Consensus 47 L~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~-~~~~~~~~~~~~l~~ll~~sD~i~~~~plt~~T~~li~~- 124 (193)
T d1mx3a1 47 IRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDG-VERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLIND- 124 (193)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTT-HHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSH-
T ss_pred eeCceEEEeccccccccceeeeeccccceeeccCccccc-chhhhccccccchhhccccCCEEEEeecccccchhhhhH-
Confidence 455789999999999999999999999999999865432 222345666789999999999999999977666654432
Q ss_pred CccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 123 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
..++.+ .++.++||++-+..-....+.+.+.+
T Consensus 125 -~~l~~m--k~~a~lIN~sRG~ivde~aL~~aL~~ 156 (193)
T d1mx3a1 125 -FTVKQM--RQGAFLVNTARGGLVDEKALAQALKE 156 (193)
T ss_dssp -HHHTTS--CTTEEEEECSCTTSBCHHHHHHHHHH
T ss_pred -HHHhcc--CCCCeEEecCCceEEcHHHHHHHHHc
Confidence 244443 36789999999986666778787764
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=98.88 E-value=1.6e-09 Score=90.23 Aligned_cols=110 Identities=12% Similarity=0.151 Sum_probs=87.2
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPN 123 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~ 123 (355)
.-.+|||||+|++|+.+++.+..-|.+|.+||+...........+.....+++++++.||+|++++|-....+.++..
T Consensus 46 ~g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~~l~~ll~~sD~v~l~~plt~~T~~li~~-- 123 (191)
T d1gdha1 46 DNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNK-- 123 (191)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSH--
T ss_pred cccceEEeecccchHHHHHHHHhhccccccccccccccchhhcccccccCCHHHHHhhCCeEEecCCCCchHhheecH--
Confidence 357899999999999999999999999999998765444444444555678999999999999999988777666543
Q ss_pred ccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 124 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 124 ~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
..++.+ .++.++||++-+..-....+.+.+.+
T Consensus 124 ~~l~~m--k~~a~lIN~sRG~ivde~aL~~aL~~ 155 (191)
T d1gdha1 124 ATIKSL--PQGAIVVNTARGDLVDNELVVAALEA 155 (191)
T ss_dssp HHHTTS--CTTEEEEECSCGGGBCHHHHHHHHHH
T ss_pred HHhhCc--CCccEEEecCCccchhhHHHHHHHHc
Confidence 345543 37789999999987776778887764
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=98.86 E-value=2e-09 Score=89.60 Aligned_cols=111 Identities=14% Similarity=0.125 Sum_probs=89.7
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
...++|||||+|.+|..+++.|..-|.+|.+||+...........+.....++.++++++|+|++++|.....+.++..
T Consensus 42 l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~~l~~~l~~sD~v~~~~plt~~T~~li~~- 120 (188)
T d2naca1 42 LEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMIND- 120 (188)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSH-
T ss_pred ccccceeeccccccchhhhhhhhccCceEEEEeeccccccccccccccccCCHHHHHHhccchhhcccccccchhhhHH-
Confidence 4568999999999999999999999999999998765555555556677789999999999999999988776666553
Q ss_pred CccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 123 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
..++.+ .++.++|+++-+..-....+.+.+.+
T Consensus 121 -~~l~~m--k~ga~lIN~aRG~ivd~~aL~~aL~~ 152 (188)
T d2naca1 121 -ETLKLF--KRGAYIVNTARGKLCDRDAVARALES 152 (188)
T ss_dssp -HHHTTS--CTTEEEEECSCGGGBCHHHHHHHHHT
T ss_pred -HHHHhC--CCCCEEEecCchhhhhHHHHHHHHhC
Confidence 245443 37789999999987777778887764
|
| >d1mv8a1 a.100.1.4 (A:203-300) GDP-mannose 6-dehydrogenase, middle domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain domain: GDP-mannose 6-dehydrogenase, middle domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.83 E-value=2.3e-08 Score=73.49 Aligned_cols=95 Identities=15% Similarity=0.137 Sum_probs=76.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCCcchhhH
Q 018506 221 GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLM 300 (355)
Q Consensus 221 g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (355)
..|+..|++.|.+.+..+++++|...+|++.|+|..++.+++.... ...... ..+ .-++||+..++
T Consensus 2 e~AEl~K~~~N~~~a~kIsf~Nel~~lc~~~g~d~~~v~~~~~~d~---ri~~~~----~~~-------~pG~G~GG~Cl 67 (98)
T d1mv8a1 2 EVAEMIKYTCNVWHAAKVTFANEIGNIAKAVGVDGREVMDVICQDH---KLNLSR----YYM-------RPGFAFGGSCL 67 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHTTCT---TTTTSS----TTC-------SCCSCCCSSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCc---cccccc----ccc-------CCcccCCcccc
Confidence 4689999999999999999999999999999999999999986432 110000 000 11247888999
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 018506 301 AKDLNLALASAKEVGVDCPLTSQAQDIYA 329 (355)
Q Consensus 301 ~kd~~~~~~~a~~~gv~~pi~~~~~~~~~ 329 (355)
.||+..+...+++.|++.++++++.+.-+
T Consensus 68 pKD~~al~~~a~~~~~~~~ll~~~~~~N~ 96 (98)
T d1mv8a1 68 PKDVRALTYRASQLDVEHPMLGSLMRSNS 96 (98)
T ss_dssp HHHHHHHHHHHHHTTCCCTTGGGHHHHHH
T ss_pred chhHHHHHHHHHHcCCChHHHHHHHHHHh
Confidence 99999999999999999999998887644
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.81 E-value=6.4e-09 Score=86.07 Aligned_cols=119 Identities=13% Similarity=0.204 Sum_probs=89.6
Q ss_pred ccccCCCC--CCCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCC
Q 018506 33 RRFFSSQV--PSCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLP 110 (355)
Q Consensus 33 ~~~~~~~~--~~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~ 110 (355)
..|.+... .....++|||||.|.+|..+++.+..-|.+|.+||+......... .+.. ..+.+|+++.||+|++++|
T Consensus 30 ~~W~~~~~~~~~l~~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~~-~~~~-~~~l~ell~~sDiv~~~~P 107 (184)
T d1ygya1 30 HTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQ-LGIE-LLSLDDLLARADFISVHLP 107 (184)
T ss_dssp TCCCGGGCCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHHHHHH-HTCE-ECCHHHHHHHCSEEEECCC
T ss_pred CCCCccccccccccceeeeeccccchhHHHHHHhhhccceEEeecCCCChhHHhh-cCce-eccHHHHHhhCCEEEEcCC
Confidence 35654322 234557899999999999999999999999999998766543332 2333 4589999999999999999
Q ss_pred CchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 111 SSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 111 ~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
-....+.++.. ..++.+ .++.++|+++-+..-..+.+.+.+.+
T Consensus 108 lt~~T~~lin~--~~l~~m--k~~a~lIN~sRG~iVde~aL~~aL~~ 150 (184)
T d1ygya1 108 KTPETAGLIDK--EALAKT--KPGVIIVNAARGGLVDEAALADAITG 150 (184)
T ss_dssp CSTTTTTCBCH--HHHTTS--CTTEEEEECSCTTSBCHHHHHHHHHT
T ss_pred CCchhhhhhhH--HHHhhh--CCCceEEEecchhhhhhHHHHHHHhc
Confidence 88777776543 245543 36789999999987666778887765
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.70 E-value=5.2e-09 Score=87.00 Aligned_cols=116 Identities=16% Similarity=0.124 Sum_probs=85.2
Q ss_pred cccCCCCCC--CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCC
Q 018506 34 RFFSSQVPS--CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPS 111 (355)
Q Consensus 34 ~~~~~~~~~--~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~ 111 (355)
.|.+..... ...++|||||+|.+|..+|+.+..-|.+|.+||+..... ........+++++++.+|+|++++|-
T Consensus 31 ~w~~~~~~~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~----~~~~~~~~~l~ell~~sDii~i~~pl 106 (188)
T d1sc6a1 31 VGNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP----LGNATQVQHLSDLLNMSDVVSLHVPE 106 (188)
T ss_dssp CCC-----CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCC----CTTCEECSCHHHHHHHCSEEEECCCS
T ss_pred CCcccccccccccceEEEEeecccchhhhhhhcccccceEeeccccccch----hhhhhhhhhHHHHHhhccceeecccC
Confidence 465553332 355799999999999999999999999999999864321 12233456899999999999999998
Q ss_pred chHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 112 SSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 112 ~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
....+.++.. ..++.+ .++.++|+++-+..-....+.+.+.+
T Consensus 107 t~~T~~li~~--~~l~~m--k~~a~lIN~aRG~lvde~aL~~aL~~ 148 (188)
T d1sc6a1 107 NPSTKNMMGA--KEISLM--KPGSLLINASRGTVVDIPALADALAS 148 (188)
T ss_dssp STTTTTCBCH--HHHHHS--CTTEEEEECSCSSSBCHHHHHHHHHT
T ss_pred CcchhhhccH--HHHhhC--CCCCEEEEcCcHHhhhhHHHHHHHHc
Confidence 7766665543 244443 37789999999987776778887764
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=98.69 E-value=1.7e-08 Score=81.35 Aligned_cols=70 Identities=20% Similarity=0.235 Sum_probs=59.5
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHhC-CC--CCCCCHHHHhhcCCEEEEeCCCc
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-GV--PTKETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~~-g~--~~~~s~~e~~~~aDiVi~~v~~~ 112 (355)
.+..+|.|||+|.||..++.+|.+.|. ++++++|+.++++.+.+. +. ...++..+.+.++|+||.|++.+
T Consensus 22 l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~~~~~~~~~~~l~~~Divi~atss~ 95 (159)
T d1gpja2 22 LHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAAP 95 (159)
T ss_dssp CTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSSS
T ss_pred cccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcccccchhHHHHhccCCEEEEecCCC
Confidence 356889999999999999999999997 599999999999888763 43 33457788889999999999765
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=98.69 E-value=1e-08 Score=85.92 Aligned_cols=107 Identities=13% Similarity=0.088 Sum_probs=82.3
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
...++|||||+|++|+.+|+.|..-|.+|++||+.+.... .......+++++++.||+|++++|.....+.++..
T Consensus 43 l~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~----~~~~~~~~l~~l~~~~D~v~~~~plt~~T~~li~~- 117 (199)
T d1dxya1 43 LGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGD----HPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINE- 117 (199)
T ss_dssp GGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSC----CTTCEECCHHHHHHHCSEEEECCCCCGGGTTSBCH-
T ss_pred ccceeeeeeecccccccccccccccceeeeccCCccchhh----hcchhHHHHHHHHHhcccceeeecccccccccccH-
Confidence 3457899999999999999999999999999998754311 11123458999999999999999988777665543
Q ss_pred CccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 123 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
..++.+ .++.++|+++-+..-..+.+.+.+.+
T Consensus 118 -~~l~~m--k~~a~lIN~aRG~vvde~aL~~aL~~ 149 (199)
T d1dxya1 118 -AAFNLM--KPGAIVINTARPNLIDTQAMLSNLKS 149 (199)
T ss_dssp -HHHHHS--CTTEEEEECSCTTSBCHHHHHHHHHT
T ss_pred -HHhhcc--CCceEEEecccHhhhhhHHHHHHHhc
Confidence 244433 36789999999887666778777764
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=98.64 E-value=3.1e-08 Score=80.97 Aligned_cols=101 Identities=18% Similarity=0.194 Sum_probs=69.6
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCC---------CCCCCHHHHhhcCCEEEEeCCCchHH
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGV---------PTKETPFEVAEASDVVITMLPSSSHV 115 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~---------~~~~s~~e~~~~aDiVi~~v~~~~~~ 115 (355)
..+|.|||+|.||..+|.+|.++||+|++|||+.++++.+.+... .......+.+...|+++.++|.....
T Consensus 2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~ 81 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFHA 81 (182)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSCGGGHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeeccchhhh
Confidence 368999999999999999999999999999999999999887421 11123445567889999888865433
Q ss_pred HHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHH
Q 018506 116 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAV 155 (355)
Q Consensus 116 ~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~ 155 (355)
.. ... ..+ .+..+++.+...+. ...+.+..
T Consensus 82 ~~-~~~---~~~-----~~~~~~~~~~~~~~-~~~l~~~~ 111 (182)
T d1e5qa1 82 TV-IKS---AIR-----QKKHVVTTSYVSPA-MMELDQAA 111 (182)
T ss_dssp HH-HHH---HHH-----HTCEEECSSCCCHH-HHHTHHHH
T ss_pred HH-HHH---HHh-----hccceeecccCcHH-HHHHHHHh
Confidence 22 211 221 22466777665543 34554443
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=98.50 E-value=1.9e-07 Score=72.70 Aligned_cols=70 Identities=16% Similarity=0.316 Sum_probs=56.4
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCC-------CCCHHHH-hhcCCEEEEeCCCchHH
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT-------KETPFEV-AEASDVVITMLPSSSHV 115 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~-------~~s~~e~-~~~aDiVi~~v~~~~~~ 115 (355)
+++.|+|+|.+|..+++.|.+.||+|+++|.++++++.+.+.+... ...+.++ +.++|.+|++++++...
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~~~~ 78 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQA 78 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCCSCHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcCchHHh
Confidence 3689999999999999999999999999999999999998765322 1223333 57899999999876443
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=98.49 E-value=5.1e-07 Score=72.83 Aligned_cols=104 Identities=15% Similarity=0.223 Sum_probs=74.9
Q ss_pred CceEEEEcccHHhHH-HHHHHHHC-CCcE-EEEeCChhHHHHHHh-CCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhc
Q 018506 45 FESVGFIGLGNMGFR-MASNLMKA-GYKM-AVHDVNCNVMKMFSD-MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYN 120 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~-ia~~L~~~-G~~V-~v~dr~~~~~~~l~~-~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~ 120 (355)
+|||||||+|.||.- ....+.+. +.++ .+||+++++.+.+.+ .++...++.+++.++.|+|++|+|.....+-+..
T Consensus 1 Kiri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~V~I~tp~~~h~~~~~~ 80 (164)
T d1tlta1 1 KLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHFDVVST 80 (164)
T ss_dssp CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHHHHHHHH
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcccccccccchhhhhhcccccccccchhccccccc
Confidence 479999999999986 56666654 5564 588999999888765 5778888999999999999999998766555443
Q ss_pred CCCccccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHh
Q 018506 121 GPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVS 156 (355)
Q Consensus 121 ~~~~~l~~~~~~~~~ivi~~-st~~~~~~~~l~~~~~ 156 (355)
.++. +-.++++- -+..+.+.+++.+...
T Consensus 81 ----al~~----gk~V~~EKPla~~~~e~~~l~~~a~ 109 (164)
T d1tlta1 81 ----LLNA----GVHVCVDKPLAENLRDAERLVELAA 109 (164)
T ss_dssp ----HHHT----TCEEEEESSSCSSHHHHHHHHHHHH
T ss_pred ----cccc----cceeeccccccCCHHHHHHHHHHHH
Confidence 2332 22466654 3345677777766554
|
| >d1dlja1 a.100.1.4 (A:197-294) UDP-glucose dehydrogenase (UDPGDH), middle domain {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain domain: UDP-glucose dehydrogenase (UDPGDH), middle domain species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.45 E-value=2.9e-06 Score=61.96 Aligned_cols=91 Identities=16% Similarity=0.124 Sum_probs=72.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCCcchhhHH
Q 018506 222 NGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMA 301 (355)
Q Consensus 222 ~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (355)
.|+..|++.|.+.+..+++++|...+|++.|+|..++.+.+....- ..... . +-+.||+..++.
T Consensus 3 eAE~~K~~~N~fla~kIsf~Ne~~~lc~~~g~d~~~v~~~~~~d~~---~~~~~------~-------~pg~g~GG~Clp 66 (98)
T d1dlja1 3 EAEAVKLFANTYLALRVAYFNELDTYAESRKLNSHMIIQGISYDDR---IGMHY------N-------NPSFGYGGYSLP 66 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTT---TCSSS------C-------CCCSSCCSSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhccc---cCCcc------c-------cCCCCcccccCc
Confidence 5889999999999999999999999999999999999988765321 10000 0 123468889999
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 018506 302 KDLNLALASAKEVGVDCPLTSQAQDIYAK 330 (355)
Q Consensus 302 kd~~~~~~~a~~~gv~~pi~~~~~~~~~~ 330 (355)
||+..++ +.+.|++.++++++.+.-+.
T Consensus 67 KD~~al~--~~~~~~~~~ll~~~~~~N~~ 93 (98)
T d1dlja1 67 KDTKQLL--ANYNNIPQTLIEAIVSSNNV 93 (98)
T ss_dssp HHHHHHH--HHHTTSSCSHHHHHHHHHHH
T ss_pred ccHHHHH--HHhcCCCcHHHHHHHHHHHh
Confidence 9999885 56779999999999887654
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.42 E-value=3.1e-07 Score=71.39 Aligned_cols=67 Identities=18% Similarity=0.282 Sum_probs=53.2
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC-CCCC----CCCHH---HH-hhcCCEEEEeCCCc
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPT----KETPF---EV-AEASDVVITMLPSS 112 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~-g~~~----~~s~~---e~-~~~aDiVi~~v~~~ 112 (355)
|||-|+|+|.+|..+++.|.+.|++|++.|.++++++.+.+. +..+ .++.+ ++ ++++|.++.+++++
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d 76 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKE 76 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCCcH
Confidence 899999999999999999999999999999999999988763 4322 12222 22 36788888888765
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.39 E-value=3.6e-07 Score=72.48 Aligned_cols=71 Identities=20% Similarity=0.205 Sum_probs=52.7
Q ss_pred CCCCCceEEEEcccHHhHHHHHHHHHCCC--cEEEEeCChhHHHH----HHh------CCCCCCCCHHHHhhcCCEEEEe
Q 018506 41 PSCQFESVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMKM----FSD------MGVPTKETPFEVAEASDVVITM 108 (355)
Q Consensus 41 ~~~~~mkIgiIG~G~mG~~ia~~L~~~G~--~V~v~dr~~~~~~~----l~~------~g~~~~~s~~e~~~~aDiVi~~ 108 (355)
+.....||+|||+|.+|..+|..|+..|. ++.++|+++++++. +.+ ......++..+.+++||+||++
T Consensus 2 ~~~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~daDvvvit 81 (148)
T d1ldna1 2 KNNGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVIC 81 (148)
T ss_dssp TTTTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEEC
T ss_pred CCCCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHHhccceeEEEe
Confidence 34456799999999999999999999875 79999999887433 221 1222334455778899999998
Q ss_pred CCC
Q 018506 109 LPS 111 (355)
Q Consensus 109 v~~ 111 (355)
...
T Consensus 82 ag~ 84 (148)
T d1ldna1 82 AGA 84 (148)
T ss_dssp CSC
T ss_pred ccc
Confidence 633
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=98.34 E-value=3.1e-07 Score=72.65 Aligned_cols=68 Identities=18% Similarity=0.178 Sum_probs=50.0
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCC--CcEEEEeCChhHHHHHH----h----CC--CCCCCCHHHHhhcCCEEEEeCCC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAG--YKMAVHDVNCNVMKMFS----D----MG--VPTKETPFEVAEASDVVITMLPS 111 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G--~~V~v~dr~~~~~~~l~----~----~g--~~~~~s~~e~~~~aDiVi~~v~~ 111 (355)
..|||+|||+|.+|..+|..|+..| .++.++|+++++++... . .+ .....+. +.+++||+||++...
T Consensus 4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~-~~~~~adivvitag~ 82 (146)
T d1ez4a1 4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEY-SDCKDADLVVITAGA 82 (146)
T ss_dssp TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCG-GGGTTCSEEEECCCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccH-HHhccccEEEEeccc
Confidence 3579999999999999999999987 58999999988754322 1 11 1223344 456899999998744
Q ss_pred c
Q 018506 112 S 112 (355)
Q Consensus 112 ~ 112 (355)
+
T Consensus 83 ~ 83 (146)
T d1ez4a1 83 P 83 (146)
T ss_dssp -
T ss_pred c
Confidence 3
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=98.29 E-value=7.1e-07 Score=71.16 Aligned_cols=68 Identities=18% Similarity=0.083 Sum_probs=52.0
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHh--------CC----CCCCCCHHHHhhcCCEEEEeC
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSD--------MG----VPTKETPFEVAEASDVVITML 109 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~--------~g----~~~~~s~~e~~~~aDiVi~~v 109 (355)
.+.+||+|||+|.+|..+|..|...+. ++.++|+++++++.... .+ ....++.+++++++|+|+++.
T Consensus 5 ~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVvita 84 (154)
T d1pzga1 5 QRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTA 84 (154)
T ss_dssp SCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECC
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEEEec
Confidence 456899999999999999999888885 79999999877544321 11 122345677889999999987
Q ss_pred C
Q 018506 110 P 110 (355)
Q Consensus 110 ~ 110 (355)
.
T Consensus 85 g 85 (154)
T d1pzga1 85 G 85 (154)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=98.25 E-value=5.8e-06 Score=67.54 Aligned_cols=106 Identities=16% Similarity=0.197 Sum_probs=72.3
Q ss_pred CCCceEEEEcccHHhHH-HHHHHHHCC--CcE-EEEeCChhHHHHHHh-CCC-CCCCCHHHHhh--cCCEEEEeCCCchH
Q 018506 43 CQFESVGFIGLGNMGFR-MASNLMKAG--YKM-AVHDVNCNVMKMFSD-MGV-PTKETPFEVAE--ASDVVITMLPSSSH 114 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~-ia~~L~~~G--~~V-~v~dr~~~~~~~l~~-~g~-~~~~s~~e~~~--~aDiVi~~v~~~~~ 114 (355)
|+.+||||||+|.||.. ....+.+.+ .+| .++|+++++++.+.+ .+. ...++.+|+++ +.|+|++|+|....
T Consensus 1 MkkirigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~ell~~~~id~v~I~tp~~~h 80 (181)
T d1zh8a1 1 LRKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVELN 80 (181)
T ss_dssp CCCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGGGH
T ss_pred CCCcEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceeeeeeccccccccceeecccccccc
Confidence 45689999999999987 477777644 354 478999999988765 343 45689999886 47999999998765
Q ss_pred HHHHhcCCCccccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHh
Q 018506 115 VLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVS 156 (355)
Q Consensus 115 ~~~vl~~~~~~l~~~~~~~~~ivi~~-st~~~~~~~~l~~~~~ 156 (355)
.+-+.. .++. +-.++++- -+....+.+++.+...
T Consensus 81 ~~~~~~----al~~----gk~V~~EKPl~~~~~e~~~l~~~~~ 115 (181)
T d1zh8a1 81 LPFIEK----ALRK----GVHVICEKPISTDVETGKKVVELSE 115 (181)
T ss_dssp HHHHHH----HHHT----TCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred cccccc----cccc----chhhhcCCCCcCCHHHHHHHHHHHH
Confidence 554432 3332 22456554 2334666677766654
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=98.21 E-value=5.8e-06 Score=66.57 Aligned_cols=104 Identities=16% Similarity=0.174 Sum_probs=71.6
Q ss_pred CceEEEEcccHHhHH-HHHHHHHC-CCcEEEEeCChhHHHHHHh-CCC-CCCCCHHHHhh-cCCEEEEeCCCchHHHHHh
Q 018506 45 FESVGFIGLGNMGFR-MASNLMKA-GYKMAVHDVNCNVMKMFSD-MGV-PTKETPFEVAE-ASDVVITMLPSSSHVLDVY 119 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~-ia~~L~~~-G~~V~v~dr~~~~~~~l~~-~g~-~~~~s~~e~~~-~aDiVi~~v~~~~~~~~vl 119 (355)
.|||||||+|.||.. ....|.+. +.++.++|+++++.+.+.+ .+. ...++.+++++ +.|+|++|+|.....+-+.
T Consensus 1 tirvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~iD~V~I~tp~~~H~~~~~ 80 (167)
T d1xeaa1 1 SLKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHSTLAA 80 (167)
T ss_dssp CEEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGHHHHHH
T ss_pred CeEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcccccccccHHHhcccccceecccccccccccccc
Confidence 389999999999976 56666655 4578899999999988876 444 35567777764 6799999999887666554
Q ss_pred cCCCccccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHh
Q 018506 120 NGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVS 156 (355)
Q Consensus 120 ~~~~~~l~~~~~~~~~ivi~~-st~~~~~~~~l~~~~~ 156 (355)
. .++. +-.++++- -.....+.+++.+...
T Consensus 81 ~----al~~----gk~V~~EKP~~~~~~e~~~l~~~a~ 110 (167)
T d1xeaa1 81 F----FLHL----GIPTFVDKPLAASAQECENLYELAE 110 (167)
T ss_dssp H----HHHT----TCCEEEESCSCSSHHHHHHHHHHHH
T ss_pred c----cccc----ccccccCCCCcCCHHHHHHHHHHHH
Confidence 3 2332 11355553 2344566677766654
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.21 E-value=2.4e-06 Score=68.01 Aligned_cols=101 Identities=12% Similarity=0.114 Sum_probs=72.1
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPN 123 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~ 123 (355)
.-++++|+|.|.+|..+|+.+...|-.|++|+++|-+.-+..-.|..+ .+.++++..+|++|++......+..
T Consensus 23 ~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~~dG~~v-~~~~~a~~~adivvtaTGn~~vI~~------ 95 (163)
T d1li4a1 23 AGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEV-TTMDEACQEGNIFVTTTGCIDIILG------ 95 (163)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCHHHHTTTCSEEEECSSCSCSBCH------
T ss_pred cCCEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHhhcCceEe-eehhhhhhhccEEEecCCCccchhH------
Confidence 346899999999999999999999999999999987654444456554 4788999999999999876422211
Q ss_pred ccccCCCCCCCeEEEEcCCCCHH-HHHHHHH
Q 018506 124 GLLQGGNSVRPQLLIDSSTIDPQ-TSRNISA 153 (355)
Q Consensus 124 ~~l~~~~~~~~~ivi~~st~~~~-~~~~l~~ 153 (355)
+.+..+ .++.++.+.+.-..+ .+..+.+
T Consensus 96 eh~~~M--KdgaIL~N~Ghfd~EId~~~L~~ 124 (163)
T d1li4a1 96 RHFEQM--KDDAIVCNIGHFDVEIDVKWLNE 124 (163)
T ss_dssp HHHTTC--CTTEEEEECSSSTTSBCHHHHHH
T ss_pred HHHHhc--cCCeEEEEeccccceecHHHHhh
Confidence 133332 256788887665433 2333443
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.20 E-value=2.2e-06 Score=68.31 Aligned_cols=81 Identities=22% Similarity=0.271 Sum_probs=64.4
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhH-HHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhc-CC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNV-MKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYN-GP 122 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~-~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~-~~ 122 (355)
.++|+|||.|.-|.+-|.+|.++|.+|++--|...+ .+...+.|..+ .+++|+++.+|+|.+.+|+. .-.+++. .+
T Consensus 16 ~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~Gf~v-~~~~eA~~~aDiim~L~PD~-~q~~vy~~~I 93 (182)
T d1np3a2 16 GKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKV-ADVKTAVAAADVVMILTPDE-FQGRLYKEEI 93 (182)
T ss_dssp TSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEE-ECHHHHHHTCSEEEECSCHH-HHHHHHHHHT
T ss_pred CCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhcccc-ccHHHHhhhcCeeeeecchH-HHHHHHHHhh
Confidence 478999999999999999999999999988776543 45555577665 58999999999999999975 4445554 45
Q ss_pred Ccccc
Q 018506 123 NGLLQ 127 (355)
Q Consensus 123 ~~~l~ 127 (355)
.+.++
T Consensus 94 ~p~lk 98 (182)
T d1np3a2 94 EPNLK 98 (182)
T ss_dssp GGGCC
T ss_pred hhhcC
Confidence 66664
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=98.18 E-value=1e-06 Score=69.09 Aligned_cols=65 Identities=25% Similarity=0.309 Sum_probs=49.6
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCC--cEEEEeCChhHHHHHHh---------CCCCCCCCHHHHhhcCCEEEEeCC
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMKMFSD---------MGVPTKETPFEVAEASDVVITMLP 110 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~--~V~v~dr~~~~~~~l~~---------~g~~~~~s~~e~~~~aDiVi~~v~ 110 (355)
|||+|||+|.+|.++|..|+.++. ++.++|+++++++.... ......++..+.++++|+||++.-
T Consensus 1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag 76 (140)
T d1a5za1 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVAAG 76 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEECCC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcHHHhcCCCEEEEecc
Confidence 899999999999999999998874 79999999887653221 112233444567889999999963
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.18 E-value=1.1e-06 Score=69.09 Aligned_cols=64 Identities=14% Similarity=0.296 Sum_probs=48.7
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCC--cEEEEeCChhHHHH----HHh----CC----CCCCCCHHHHhhcCCEEEEeCC
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMKM----FSD----MG----VPTKETPFEVAEASDVVITMLP 110 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~--~V~v~dr~~~~~~~----l~~----~g----~~~~~s~~e~~~~aDiVi~~v~ 110 (355)
|||+|||+|.+|.++|..|+.+|. ++.++|+++++++. +.. .. +....+ .+.++++|+|+++..
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d-~~~~~~adiVvitag 78 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVTAG 78 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEECCC
T ss_pred CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCC-HHHhccccEEEEecc
Confidence 899999999999999999998874 79999999987543 221 11 112234 467789999999864
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=98.17 E-value=8.8e-07 Score=69.67 Aligned_cols=64 Identities=20% Similarity=0.248 Sum_probs=49.3
Q ss_pred ceEEEEcccHHhHHHHHHHHHCC--CcEEEEeCChhHHHHHH----hC------CCCC-CCCHHHHhhcCCEEEEeC
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAG--YKMAVHDVNCNVMKMFS----DM------GVPT-KETPFEVAEASDVVITML 109 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G--~~V~v~dr~~~~~~~l~----~~------g~~~-~~s~~e~~~~aDiVi~~v 109 (355)
|||+|||+|.+|.+++..|+..| .++.++|+++++.+... .. .... .++..+.++++|+|+++.
T Consensus 1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadvvvita 77 (142)
T d1guza1 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVIITA 77 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEEECC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeEEEEEE
Confidence 89999999999999999999987 58999999988754322 11 1222 234566778999999996
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=1e-06 Score=73.62 Aligned_cols=68 Identities=16% Similarity=0.253 Sum_probs=53.4
Q ss_pred CCCceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCC-------CCCHHHHhhcCCEEEEeCC
Q 018506 43 CQFESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT-------KETPFEVAEASDVVITMLP 110 (355)
Q Consensus 43 ~~~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~-------~~s~~e~~~~aDiVi~~v~ 110 (355)
|.|+||.|+| .|.+|+.++..|.++||+|+++.|++++.......++.. .++..++++++|+||.++.
T Consensus 1 m~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~g 76 (205)
T d1hdoa_ 1 MAVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLG 76 (205)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccccccccccccccccchhhHHHHhcCCCEEEEEec
Confidence 5788999998 699999999999999999999999999866554443221 2344566788888888775
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.10 E-value=3.9e-06 Score=68.74 Aligned_cols=104 Identities=15% Similarity=0.192 Sum_probs=72.8
Q ss_pred CceEEEEcccHHhHHHHHHHHHC-CCcEE-EEeCChhHHHHHHh-CCC----CCCCCHHHHhh--cCCEEEEeCCCchHH
Q 018506 45 FESVGFIGLGNMGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSD-MGV----PTKETPFEVAE--ASDVVITMLPSSSHV 115 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~-G~~V~-v~dr~~~~~~~l~~-~g~----~~~~s~~e~~~--~aDiVi~~v~~~~~~ 115 (355)
++||||||+|.||...+..|... +.+|+ ++|+++++.+.+.+ .+. ...++.+++++ +.|+|++++|.....
T Consensus 1 kiki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp~~~h~ 80 (184)
T d1ydwa1 1 QIRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHV 80 (184)
T ss_dssp CEEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGHH
T ss_pred CeEEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeecCcHHHhhhccccceeeecccchhhc
Confidence 37999999999999999999876 45655 77999999887765 332 34678988874 579999999988766
Q ss_pred HHHhcCCCccccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHh
Q 018506 116 LDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVS 156 (355)
Q Consensus 116 ~~vl~~~~~~l~~~~~~~~~ivi~~-st~~~~~~~~l~~~~~ 156 (355)
+-+.. .++. +-.++++- -...+.+.+++.+...
T Consensus 81 ~~~~~----~l~~----g~~v~~EKP~~~~~~e~~~l~~~~~ 114 (184)
T d1ydwa1 81 EWAIK----AAEK----GKHILLEKPVAMNVTEFDKIVDACE 114 (184)
T ss_dssp HHHHH----HHTT----TCEEEECSSCSSSHHHHHHHHHHHH
T ss_pred chhhh----hhhc----cceeecccccccCHHHHHHHHHHHH
Confidence 65443 2321 11355543 2234666677766654
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=98.07 E-value=2.4e-06 Score=69.19 Aligned_cols=73 Identities=15% Similarity=0.200 Sum_probs=53.5
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHC-CCcE-EEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHH
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKA-GYKM-AVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDV 118 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~-G~~V-~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~v 118 (355)
|+.+||||||+|.||+..+..|.+. +.++ .+++++++... ..+.....+..+..++.|+|++|+|.....+-+
T Consensus 1 M~kirvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~---~~~~~~~~~~~~~~~~~D~Vvi~tp~~~h~~~a 75 (170)
T d1f06a1 1 MTNIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDT---KTPVFDVADVDKHADDVDVLFLCMGSATDIPEQ 75 (170)
T ss_dssp CCCEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSS---SSCEEEGGGGGGTTTTCSEEEECSCTTTHHHHH
T ss_pred CCcceEEEECChHHHHHHHHHHHhCCCcEEEEEEeccccccc---ccccccchhhhhhccccceEEEeCCCcccHHHH
Confidence 4568999999999999999999875 4564 47788865422 123334556667778999999999987655443
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=98.05 E-value=1.8e-05 Score=66.73 Aligned_cols=110 Identities=15% Similarity=0.226 Sum_probs=73.8
Q ss_pred CCCCCCCceEEEEcccHHhHH-HHHHHHHC-CCcEE-EEeCChhHHHHHHh-CCCC-----CCCCHHHHhh--cCCEEEE
Q 018506 39 QVPSCQFESVGFIGLGNMGFR-MASNLMKA-GYKMA-VHDVNCNVMKMFSD-MGVP-----TKETPFEVAE--ASDVVIT 107 (355)
Q Consensus 39 ~~~~~~~mkIgiIG~G~mG~~-ia~~L~~~-G~~V~-v~dr~~~~~~~l~~-~g~~-----~~~s~~e~~~--~aDiVi~ 107 (355)
|+++.+.-||||||+|.||.. +...+... +.+|. ++|+++++++.+.+ .++. ..+|.+++++ +.|+|++
T Consensus 27 ~~~~~~~iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~~~iD~V~I 106 (221)
T d1h6da1 27 PMPEDRRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYI 106 (221)
T ss_dssp CCCCCCCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEE
T ss_pred CCCCCCCEEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcccccceeeee
Confidence 344445679999999999974 56666654 45654 88999999988765 3442 4578888875 5789999
Q ss_pred eCCCchHHHHHhcCCCccccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHh
Q 018506 108 MLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVS 156 (355)
Q Consensus 108 ~v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~-st~~~~~~~~l~~~~~ 156 (355)
++|.....+-++.. +.. +-.++++- -+..+++..++.+...
T Consensus 107 ~tp~~~H~~~~~~a----l~~----gk~v~~EKPla~~~~e~~~l~~~a~ 148 (221)
T d1h6da1 107 ILPNSLHAEFAIRA----FKA----GKHVMCEKPMATSVADCQRMIDAAK 148 (221)
T ss_dssp CSCGGGHHHHHHHH----HHT----TCEEEECSSCCSSHHHHHHHHHHHH
T ss_pred ccchhhhhhHHHHh----hhc----chhhhcCCCccCCHHHHHHHHHHHH
Confidence 99987666555432 321 12355553 3345677777766554
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=98.04 E-value=5.4e-06 Score=64.96 Aligned_cols=66 Identities=18% Similarity=0.184 Sum_probs=48.6
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHh----------CCCCC--CCCHHHHhhcCCEEEEeCCCc
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSD----------MGVPT--KETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~----------~g~~~--~~s~~e~~~~aDiVi~~v~~~ 112 (355)
+||+|||+|++|.++|..|+..+. ++.++|+++++.+.... ..... +.+. +.++++|+||++...+
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~-~~~~~advvvitag~~ 80 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIVVTSGAP 80 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEEECCSCC
T ss_pred CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcH-HHhcCCCEEEEeeecc
Confidence 699999999999999999998875 79999998877543221 11222 3344 4568999999997443
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.03 E-value=2.8e-06 Score=67.80 Aligned_cols=69 Identities=17% Similarity=0.348 Sum_probs=50.5
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCC--cEEEEeCChhHHH----HHHhC----CCC--CCCCHHHHhhcCCEEEEeCC
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMK----MFSDM----GVP--TKETPFEVAEASDVVITMLP 110 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~--~V~v~dr~~~~~~----~l~~~----g~~--~~~s~~e~~~~aDiVi~~v~ 110 (355)
++..||+|||+|.+|..+|..|...|+ ++.++|+++++++ .+... +.. ...+..+.++++|+|+++..
T Consensus 17 ~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~~~~~~adivvitag 96 (159)
T d2ldxa1 17 LSRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDYNVSANSKLVIITAG 96 (159)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSGGGGTTEEEEEECCS
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccchhhhccccEEEEecc
Confidence 455799999999999999999999886 7999999987754 23321 111 12233455689999999863
Q ss_pred C
Q 018506 111 S 111 (355)
Q Consensus 111 ~ 111 (355)
.
T Consensus 97 ~ 97 (159)
T d2ldxa1 97 A 97 (159)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=98.00 E-value=3.8e-06 Score=66.09 Aligned_cols=66 Identities=29% Similarity=0.401 Sum_probs=48.9
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCC--cEEEEeCChhHHHHH----Hh----CC--CCCCCCHHHHhhcCCEEEEeCCC
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMKMF----SD----MG--VPTKETPFEVAEASDVVITMLPS 111 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~--~V~v~dr~~~~~~~l----~~----~g--~~~~~s~~e~~~~aDiVi~~v~~ 111 (355)
+||+|||+|.+|+.+|..|...|. ++.++|+++++++.. .+ .. .....+..+.+++||+||++...
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l~~adiVVitaG~ 79 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADVVISTLGN 79 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSEEEECCSC
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCHHHhccccEEEEeccc
Confidence 689999999999999999998774 899999998875432 21 11 12223334567899999998653
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=98.00 E-value=6.1e-06 Score=65.81 Aligned_cols=66 Identities=17% Similarity=0.302 Sum_probs=49.5
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCC--cEEEEeCChhHHHH----HHhC----CC--CCCCCHHHHhhcCCEEEEeCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMKM----FSDM----GV--PTKETPFEVAEASDVVITMLP 110 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~--~V~v~dr~~~~~~~----l~~~----g~--~~~~s~~e~~~~aDiVi~~v~ 110 (355)
..||+|||+|++|+.+|..|...|. ++.++|+++++++. +... +. .......+.+++||+|+++.-
T Consensus 20 ~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~~~adiVVitAg 97 (160)
T d1i0za1 20 NNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTAG 97 (160)
T ss_dssp SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGGTTCSEEEECCS
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhhcccccEEEEecC
Confidence 4699999999999999999999987 79999999887633 2221 11 112333566789999999863
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=97.95 E-value=7.9e-06 Score=58.38 Aligned_cols=63 Identities=17% Similarity=0.333 Sum_probs=49.7
Q ss_pred ceEEEEcccHHhH-HHHHHHHHCCCcEEEEeCCh-hHHHHHHhCCCCCCC-CHHHHhhcCCEEEEe
Q 018506 46 ESVGFIGLGNMGF-RMASNLMKAGYKMAVHDVNC-NVMKMFSDMGVPTKE-TPFEVAEASDVVITM 108 (355)
Q Consensus 46 mkIgiIG~G~mG~-~ia~~L~~~G~~V~v~dr~~-~~~~~l~~~g~~~~~-s~~e~~~~aDiVi~~ 108 (355)
|||=|||.|.+|. ++|+.|.++|++|+++|+.+ +..+.|.+.|+.... ...+-++++|+||..
T Consensus 2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~Gi~i~~gh~~~~i~~~d~vV~S 67 (89)
T d1j6ua1 2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAYLRKLGIPIFVPHSADNWYDPDLVIKT 67 (89)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCCEESSCCTTSCCCCSEEEEC
T ss_pred cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHHHCCCeEEeeecccccCCCCEEEEe
Confidence 8999999999997 89999999999999999876 456778888876532 222334678888776
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.92 E-value=2.2e-05 Score=70.01 Aligned_cols=93 Identities=23% Similarity=0.291 Sum_probs=68.7
Q ss_pred CCceEEEEcccHHhHHHHHHHHHC-C-CcEEEEeCChhHHHHHHh----CCCCCCCCHHHHhhcCCEEEEeCCCchHHHH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKA-G-YKMAVHDVNCNVMKMFSD----MGVPTKETPFEVAEASDVVITMLPSSSHVLD 117 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~-G-~~V~v~dr~~~~~~~l~~----~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~ 117 (355)
...+++|||+|..+...+..|... . .+|.+|+|++++.+.+.+ .+..+..++.+++.+||+|+.|+++.+.
T Consensus 124 ~~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~~~~a~~~aDiV~taT~s~~P--- 200 (320)
T d1omoa_ 124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEASRCDVLVTTTPSRKP--- 200 (320)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHTSSSEEEECCCCSSC---
T ss_pred CccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccchhhhhccccEEEEeccCccc---
Confidence 346799999999999999998863 2 379999999999876643 5677777888999999999999986522
Q ss_pred HhcCCCccccCCCCCCCeEEEEcCCCCHH
Q 018506 118 VYNGPNGLLQGGNSVRPQLLIDSSTIDPQ 146 (355)
Q Consensus 118 vl~~~~~~l~~~~~~~~~ivi~~st~~~~ 146 (355)
++.. .++ .+|..|...++..|.
T Consensus 201 ~~~~--~~l-----~~G~hv~~iGs~~p~ 222 (320)
T d1omoa_ 201 VVKA--EWV-----EEGTHINAIGADGPG 222 (320)
T ss_dssp CBCG--GGC-----CTTCEEEECSCCSTT
T ss_pred ccch--hhc-----CCCCeEeecCCcccc
Confidence 2211 133 256677777666554
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=97.91 E-value=7e-06 Score=66.42 Aligned_cols=68 Identities=22% Similarity=0.321 Sum_probs=50.0
Q ss_pred CceEEEEcccHHhHHHH--HHHHHC----CCcEEEEeCChhHHHHHHh--------CC----CCCCCCHHHHhhcCCEEE
Q 018506 45 FESVGFIGLGNMGFRMA--SNLMKA----GYKMAVHDVNCNVMKMFSD--------MG----VPTKETPFEVAEASDVVI 106 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia--~~L~~~----G~~V~v~dr~~~~~~~l~~--------~g----~~~~~s~~e~~~~aDiVi 106 (355)
.|||+|||+|.+|.+.+ ..|+.. +.++.++|+++++++.... .+ +..+++..|+++++|+|+
T Consensus 2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~Vv 81 (171)
T d1obba1 2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI 81 (171)
T ss_dssp CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCeEe
Confidence 48999999999998643 334432 4699999999998754221 12 334678999999999999
Q ss_pred EeCCCc
Q 018506 107 TMLPSS 112 (355)
Q Consensus 107 ~~v~~~ 112 (355)
++....
T Consensus 82 ~~~~~g 87 (171)
T d1obba1 82 NTAMVG 87 (171)
T ss_dssp ECCCTT
T ss_pred eecccc
Confidence 997543
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=97.89 E-value=4e-06 Score=65.72 Aligned_cols=65 Identities=15% Similarity=0.128 Sum_probs=44.6
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCC--cEEEEeCChhHHH----HHHhCC-----CCCCCCHHHHhhcCCEEEEeCC
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMK----MFSDMG-----VPTKETPFEVAEASDVVITMLP 110 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~--~V~v~dr~~~~~~----~l~~~g-----~~~~~s~~e~~~~aDiVi~~v~ 110 (355)
.||+|||+|.+|+.+|..|..++. ++.++|+++++++ .+.... ....+...+.++++|+|+++..
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag 77 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAG 77 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCC
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHHhCCCceEEEecc
Confidence 689999999999999999999886 7999999887642 222210 1112233456789999999853
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=97.88 E-value=1.7e-05 Score=62.70 Aligned_cols=93 Identities=16% Similarity=0.110 Sum_probs=70.1
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCCc
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNG 124 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~~ 124 (355)
-+++.|+|.|..|..+|++|...|-.|++++++|-++-+..-.|..+ .+.+|+++.+|++|.++.....+.. +
T Consensus 23 Gk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA~mdGf~v-~~~~~a~~~aDi~vTaTGn~~vI~~------~ 95 (163)
T d1v8ba1 23 GKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNV-VTLDEIVDKGDFFITCTGNVDVIKL------E 95 (163)
T ss_dssp TSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEE-CCHHHHTTTCSEEEECCSSSSSBCH------H
T ss_pred CCEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHHHhcCCcc-CchhHccccCcEEEEcCCCCccccH------H
Confidence 36899999999999999999999999999999996654444466665 6899999999999999876532111 1
Q ss_pred cccCCCCCCCeEEEEcCCCCHH
Q 018506 125 LLQGGNSVRPQLLIDSSTIDPQ 146 (355)
Q Consensus 125 ~l~~~~~~~~~ivi~~st~~~~ 146 (355)
++..++ .+.|+.+...-..+
T Consensus 96 h~~~MK--dgaIl~N~GHfd~E 115 (163)
T d1v8ba1 96 HLLKMK--NNAVVGNIGHFDDE 115 (163)
T ss_dssp HHTTCC--TTCEEEECSSTTTS
T ss_pred HHHHhh--CCeEEEeccccchh
Confidence 333322 56788887766544
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=97.86 E-value=7.7e-06 Score=64.02 Aligned_cols=65 Identities=17% Similarity=0.282 Sum_probs=48.4
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCC--cEEEEeCChhHHHH----HHhC----C-CC-CCCCHHHHhhcCCEEEEeCC
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMKM----FSDM----G-VP-TKETPFEVAEASDVVITMLP 110 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~--~V~v~dr~~~~~~~----l~~~----g-~~-~~~s~~e~~~~aDiVi~~v~ 110 (355)
.||+|||+|++|+.+|..|..+|. ++.++|+++++++. +... + .. ...+..+.++++|+|+++.-
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~~~~daDvVVitaG 78 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVITAG 78 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEECCC
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCHHHhhCCcEEEEecc
Confidence 589999999999999999999886 79999999987643 2321 1 11 12233456789999999963
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=97.84 E-value=1.1e-05 Score=63.58 Aligned_cols=66 Identities=17% Similarity=0.202 Sum_probs=48.6
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHh----------CCCCC-CCCHHHHhhcCCEEEEeCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSD----------MGVPT-KETPFEVAEASDVVITMLP 110 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~----------~g~~~-~~s~~e~~~~aDiVi~~v~ 110 (355)
.+||+|||+|.+|+++|..|...+. ++.+||+++++++.... ..... ..+..+.++++|+|+++.-
T Consensus 3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~~advvvitag 80 (150)
T d1t2da1 3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAG 80 (150)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEECCS
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecccccccCCCcEEEEecc
Confidence 3699999999999999988887764 79999999877544321 11122 2344567789999999964
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=97.81 E-value=1.7e-05 Score=57.53 Aligned_cols=65 Identities=25% Similarity=0.420 Sum_probs=49.4
Q ss_pred CCceEEEEcccHHh-HHHHHHHHHCCCcEEEEeCC-hhHHHHHHhCCCCCCC-CHHHHhhcCCEEEEe
Q 018506 44 QFESVGFIGLGNMG-FRMASNLMKAGYKMAVHDVN-CNVMKMFSDMGVPTKE-TPFEVAEASDVVITM 108 (355)
Q Consensus 44 ~~mkIgiIG~G~mG-~~ia~~L~~~G~~V~v~dr~-~~~~~~l~~~g~~~~~-s~~e~~~~aDiVi~~ 108 (355)
..++|-|||.|..| +++|+.|.+.||+|+++|+. ....+.+.+.|+.+.. ...+.+++.|+||..
T Consensus 7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~~Gi~v~~g~~~~~i~~~d~vV~S 74 (96)
T d1p3da1 7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYIGHAEEHIEGASVVVVS 74 (96)
T ss_dssp TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEEEESCCGGGGTTCSEEEEC
T ss_pred hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHHCCCeEEECCccccCCCCCEEEEC
Confidence 45789999999999 88899999999999999986 4455677777765432 223345677877766
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=97.77 E-value=9.5e-06 Score=65.00 Aligned_cols=67 Identities=16% Similarity=0.109 Sum_probs=49.8
Q ss_pred ceEEEEcccHHhHHHHHH-HHH-C----CCcEEEEeCChhHHHHHHhC---------CCCCCCCHHHHhhcCCEEEEeCC
Q 018506 46 ESVGFIGLGNMGFRMASN-LMK-A----GYKMAVHDVNCNVMKMFSDM---------GVPTKETPFEVAEASDVVITMLP 110 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~-L~~-~----G~~V~v~dr~~~~~~~l~~~---------g~~~~~s~~e~~~~aDiVi~~v~ 110 (355)
|||+|||+|..|.+.+.. |+. . +.++.++|+++++++...+. ....+++..+++++||+||++.-
T Consensus 1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~~aDvVVita~ 80 (162)
T d1up7a1 1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFR 80 (162)
T ss_dssp CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEECCC
T ss_pred CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCcccccCCCCEEEEecc
Confidence 899999999999888754 322 1 35899999999987654321 13345778889999999999975
Q ss_pred Cc
Q 018506 111 SS 112 (355)
Q Consensus 111 ~~ 112 (355)
.+
T Consensus 81 ~~ 82 (162)
T d1up7a1 81 PG 82 (162)
T ss_dssp TT
T ss_pred cC
Confidence 43
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.75 E-value=2.1e-05 Score=61.50 Aligned_cols=65 Identities=15% Similarity=0.142 Sum_probs=49.0
Q ss_pred ceEEEEcc-cHHhHHHHHHHHHCCC--cEEEEeCChhHHHHHHhCC---------CCCCCCHHHHhhcCCEEEEeCC
Q 018506 46 ESVGFIGL-GNMGFRMASNLMKAGY--KMAVHDVNCNVMKMFSDMG---------VPTKETPFEVAEASDVVITMLP 110 (355)
Q Consensus 46 mkIgiIG~-G~mG~~ia~~L~~~G~--~V~v~dr~~~~~~~l~~~g---------~~~~~s~~e~~~~aDiVi~~v~ 110 (355)
.||+|||+ |.+|+++|..|...|. ++.++|.++.+.+.+--.. .....+..+.+++||+||++..
T Consensus 1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag 77 (144)
T d1mlda1 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAG 77 (144)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCS
T ss_pred CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCC
Confidence 38999995 9999999999998885 6999999877654432111 1123456788899999999864
|
| >d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class II ketol-acid reductoisomerase (KARI) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=97.75 E-value=2.7e-05 Score=64.18 Aligned_cols=82 Identities=20% Similarity=0.242 Sum_probs=60.2
Q ss_pred CceEEEEcccHHhHHHHHHHHHCC------CcEEEEeCC-hhHHHHHHhCCCCC----CCCHHHHhhcCCEEEEeCCCch
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAG------YKMAVHDVN-CNVMKMFSDMGVPT----KETPFEVAEASDVVITMLPSSS 113 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G------~~V~v~dr~-~~~~~~l~~~g~~~----~~s~~e~~~~aDiVi~~v~~~~ 113 (355)
+.||+|||.|.-|.+-|.+|.++| ..|++-=|. ....+...+.|... ..+.+|+++.+|+|++.+|+.
T Consensus 44 ~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~~~~v~~v~EAv~~ADiVmiLlPDe- 122 (226)
T d1qmga2 44 IKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLISDS- 122 (226)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGGGTCEEEHHHHHHTCSEEEECSCHH-
T ss_pred CCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccCCCcccCHHHHHhhCCEEEEecchH-
Confidence 468999999999999999999965 456655443 33455566677653 447899999999999999975
Q ss_pred HHHHHhcCCCcccc
Q 018506 114 HVLDVYNGPNGLLQ 127 (355)
Q Consensus 114 ~~~~vl~~~~~~l~ 127 (355)
.-.++++++.+.++
T Consensus 123 ~Q~~vy~~I~p~Lk 136 (226)
T d1qmga2 123 AQADNYEKVFSHMK 136 (226)
T ss_dssp HHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhcC
Confidence 44556665444553
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=97.73 E-value=5.1e-05 Score=60.18 Aligned_cols=92 Identities=26% Similarity=0.235 Sum_probs=57.4
Q ss_pred CCceEEEEcccHHhHH-HHHHHHHCC-CcE-EEEeCChhH--HHHHHhCCCCCCCC-HHHHh-----hcCCEEEEeCCCc
Q 018506 44 QFESVGFIGLGNMGFR-MASNLMKAG-YKM-AVHDVNCNV--MKMFSDMGVPTKET-PFEVA-----EASDVVITMLPSS 112 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~-ia~~L~~~G-~~V-~v~dr~~~~--~~~l~~~g~~~~~s-~~e~~-----~~aDiVi~~v~~~ 112 (355)
+++||||||+|.+|.. +...|.... .++ .+.+|+++. .+...+.++....+ .+++. .+.|+||+++|..
T Consensus 3 kkirvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~~~~d~l~~~~~~~~iDiVf~ATpag 82 (157)
T d1nvmb1 3 QKLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSAS 82 (157)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCHH
T ss_pred CCcEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccccceeeeeecccccccCEEEEcCCch
Confidence 4589999999999986 555655443 344 456887653 23344567665544 33332 3689999999976
Q ss_pred hHHHHHhcCCCccccCCCCCCCeEEEEcCC
Q 018506 113 SHVLDVYNGPNGLLQGGNSVRPQLLIDSST 142 (355)
Q Consensus 113 ~~~~~vl~~~~~~l~~~~~~~~~ivi~~st 142 (355)
.+++..... ..++ .|..+||.|.
T Consensus 83 ~h~~~~~~~--~aa~-----~G~~VID~s~ 105 (157)
T d1nvmb1 83 AHVQNEALL--RQAK-----PGIRLIDLTP 105 (157)
T ss_dssp HHHHHHHHH--HHHC-----TTCEEEECST
T ss_pred hHHHhHHHH--HHHH-----cCCEEEEccc
Confidence 555432110 0122 5678999987
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.73 E-value=1.8e-05 Score=62.06 Aligned_cols=64 Identities=22% Similarity=0.273 Sum_probs=46.4
Q ss_pred ceEEEEcc-cHHhHHHHHHHHHCC--CcEEEEeCChhH--HH----HHHh----CC--CCC---CCCHHHHhhcCCEEEE
Q 018506 46 ESVGFIGL-GNMGFRMASNLMKAG--YKMAVHDVNCNV--MK----MFSD----MG--VPT---KETPFEVAEASDVVIT 107 (355)
Q Consensus 46 mkIgiIG~-G~mG~~ia~~L~~~G--~~V~v~dr~~~~--~~----~l~~----~g--~~~---~~s~~e~~~~aDiVi~ 107 (355)
|||+|||+ |.+|.++|..|+..| .++.++|++++. ++ .+.+ .. .+. .++..+.+++||+||+
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~aDvVVi 80 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII 80 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccceEEEE
Confidence 89999995 999999999999988 489999988642 22 2222 11 111 1334567789999999
Q ss_pred eC
Q 018506 108 ML 109 (355)
Q Consensus 108 ~v 109 (355)
+.
T Consensus 81 tA 82 (145)
T d1hyea1 81 TS 82 (145)
T ss_dssp CC
T ss_pred ec
Confidence 85
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=97.69 E-value=4e-05 Score=61.41 Aligned_cols=68 Identities=15% Similarity=0.050 Sum_probs=48.5
Q ss_pred CCceEEEEcccHHhHHHH-HHHHH-C----CCcEEEEeCChhHHHHHHh--------CC----CCCCCCHHHHhhcCCEE
Q 018506 44 QFESVGFIGLGNMGFRMA-SNLMK-A----GYKMAVHDVNCNVMKMFSD--------MG----VPTKETPFEVAEASDVV 105 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia-~~L~~-~----G~~V~v~dr~~~~~~~l~~--------~g----~~~~~s~~e~~~~aDiV 105 (355)
+..||+|||+|..|++.+ ..+.. . +.++.++|.++++++.... .+ ....++..|++++||+|
T Consensus 2 k~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~V 81 (167)
T d1u8xx1 2 KSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFV 81 (167)
T ss_dssp CCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEE
T ss_pred CCceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCEE
Confidence 357999999999987644 23332 2 1379999999998763221 12 33467888999999999
Q ss_pred EEeCCC
Q 018506 106 ITMLPS 111 (355)
Q Consensus 106 i~~v~~ 111 (355)
|++.-.
T Consensus 82 vitag~ 87 (167)
T d1u8xx1 82 MAHIRV 87 (167)
T ss_dssp EECCCT
T ss_pred EECCCc
Confidence 999743
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=97.67 E-value=1.9e-05 Score=62.79 Aligned_cols=96 Identities=14% Similarity=0.168 Sum_probs=67.3
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCC---CC----CCCCHHHHhhcCCEEEEeCCCch-HH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG---VP----TKETPFEVAEASDVVITMLPSSS-HV 115 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g---~~----~~~s~~e~~~~aDiVi~~v~~~~-~~ 115 (355)
.--|+.|||.|..|..=++.....|-+|+++|+++++.+.+.... .. ....+++.++++|+||.++--+- ..
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~~a 110 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRRA 110 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSSC
T ss_pred CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCccc
Confidence 346899999999999999999999999999999999998887632 11 12245677889999999963221 00
Q ss_pred HHHhcCCCccccCCCCCCCeEEEEcCCC
Q 018506 116 LDVYNGPNGLLQGGNSVRPQLLIDSSTI 143 (355)
Q Consensus 116 ~~vl~~~~~~l~~~~~~~~~ivi~~st~ 143 (355)
..++. +..++.++ ++.+|||.+.-
T Consensus 111 P~lIt--~~mv~~Mk--~GSVIVDvaid 134 (168)
T d1pjca1 111 PILVP--ASLVEQMR--TGSVIVDVAVD 134 (168)
T ss_dssp CCCBC--HHHHTTSC--TTCEEEETTCT
T ss_pred Ceeec--HHHHhhcC--CCcEEEEeecC
Confidence 01111 11333332 67899998764
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=97.63 E-value=6.9e-05 Score=61.84 Aligned_cols=67 Identities=22% Similarity=0.184 Sum_probs=55.9
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHh-hcCCEEEEeCC
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVA-EASDVVITMLP 110 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~-~~aDiVi~~v~ 110 (355)
..-.+|+|.|.|++|..+|+.|.+.|..|+++|.+++++......+.... ++++++ .+|||++-|--
T Consensus 25 L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~~g~~~~-~~~~~~~~~~DI~iPcA~ 92 (201)
T d1c1da1 25 LDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAV-ALEDVLSTPCDVFAPCAM 92 (201)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC-CGGGGGGCCCSEEEECSC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHHHhhccccc-Cccccccccceeeecccc
Confidence 45578999999999999999999999999999999999988888776655 445554 47998887743
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=97.63 E-value=2.4e-05 Score=56.37 Aligned_cols=36 Identities=28% Similarity=0.338 Sum_probs=32.1
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
+-.||.|+|+|..|.+.|+.|.+.|++|++||.++.
T Consensus 4 ~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~ 39 (93)
T d2jfga1 4 QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT 39 (93)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred CCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence 346899999999999999999999999999997543
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=97.62 E-value=5.6e-05 Score=60.93 Aligned_cols=93 Identities=14% Similarity=0.169 Sum_probs=64.4
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCC-----------------------------CHH
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKE-----------------------------TPF 96 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~-----------------------------s~~ 96 (355)
-||.|||+|..|..=++.....|-.|+++|+++++.+++.+.+..... .+.
T Consensus 30 a~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~~l~ 109 (183)
T d1l7da1 30 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAVL 109 (183)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHHHH
T ss_pred cEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999886542221 122
Q ss_pred HHhhcCCEEEEeCCCchH-HHHHhcCCCccccCCCCCCCeEEEEcCC
Q 018506 97 EVAEASDVVITMLPSSSH-VLDVYNGPNGLLQGGNSVRPQLLIDSST 142 (355)
Q Consensus 97 e~~~~aDiVi~~v~~~~~-~~~vl~~~~~~l~~~~~~~~~ivi~~st 142 (355)
+.++++|+||.++--+-. ..-++. +..++.+ .+|.+|||.+-
T Consensus 110 ~~l~~aDlVI~talipG~~aP~lit--~~mv~~M--k~GSVIVDvai 152 (183)
T d1l7da1 110 KELVKTDIAITTALIPGKPAPVLIT--EEMVTKM--KPGSVIIDLAV 152 (183)
T ss_dssp HHHTTCSEEEECCCCTTSCCCCCSC--HHHHTTS--CTTCEEEETTG
T ss_pred HHHHhhhhheeeeecCCcccceeeh--HHHHHhc--CCCcEEEEEee
Confidence 346789999998632210 000111 1133332 26789999865
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=97.60 E-value=6.6e-05 Score=60.36 Aligned_cols=97 Identities=10% Similarity=0.008 Sum_probs=65.0
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC----C-CCCCCCHHHHhhcCCEEEEeCCCchHHHHH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM----G-VPTKETPFEVAEASDVVITMLPSSSHVLDV 118 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~----g-~~~~~s~~e~~~~aDiVi~~v~~~~~~~~v 118 (355)
+-++|.|+|+|..+.+++..|.+.|.+|++++|++++++.+.+. + +............+|+||-|+|-... .+
T Consensus 17 ~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~dliIN~Tp~G~~-~~- 94 (170)
T d1nyta1 17 PGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGIS-GD- 94 (170)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGG-TC-
T ss_pred CCCEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcccccccccccccccccceeecccccCcc-cC-
Confidence 34689999999999999999999999999999999999887652 1 11122222223579999999986521 11
Q ss_pred hcCCCccccCCCCCCCeEEEEcCCCCHH
Q 018506 119 YNGPNGLLQGGNSVRPQLLIDSSTIDPQ 146 (355)
Q Consensus 119 l~~~~~~l~~~~~~~~~ivi~~st~~~~ 146 (355)
..... ... ..++.+++|+--.+..
T Consensus 95 ~~~~~--~~~--~~~~~~v~D~vY~P~~ 118 (170)
T d1nyta1 95 IPAIP--SSL--IHPGIYCYDMFYQKGK 118 (170)
T ss_dssp CCCCC--GGG--CCTTCEEEESCCCSSC
T ss_pred CCCCc--HHH--hccCcEEEEeecCCCC
Confidence 11110 111 2245688898766544
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.59 E-value=4.3e-05 Score=59.76 Aligned_cols=65 Identities=22% Similarity=0.242 Sum_probs=44.9
Q ss_pred ceEEEEc-ccHHhHHHHHHHHH-C--CCcEEEEeCChhHHH---HHHhCCC------CCCCCHHHHhhcCCEEEEeCC
Q 018506 46 ESVGFIG-LGNMGFRMASNLMK-A--GYKMAVHDVNCNVMK---MFSDMGV------PTKETPFEVAEASDVVITMLP 110 (355)
Q Consensus 46 mkIgiIG-~G~mG~~ia~~L~~-~--G~~V~v~dr~~~~~~---~l~~~g~------~~~~s~~e~~~~aDiVi~~v~ 110 (355)
|||+||| .|.+|+++|..|.. . +.++.++|..+.... .+..... ...++..+.++++|+||++--
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvitaG 78 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAG 78 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEECCS
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEECCC
Confidence 8999999 59999999998864 3 468999998653322 2332111 112344567889999999963
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=97.59 E-value=3.7e-05 Score=61.73 Aligned_cols=65 Identities=14% Similarity=0.230 Sum_probs=51.0
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHh-CCCCCCCCHHHHhhcCCEEEEeCCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSD-MGVPTKETPFEVAEASDVVITMLPS 111 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~-~g~~~~~s~~e~~~~aDiVi~~v~~ 111 (355)
..+|.|||+|.++.+++..|.+.|. +|++++|++++.+.+.+ .+.....+.. ..++|+||-|+|-
T Consensus 17 ~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~~~~~~--~~~~DliINaTpi 83 (167)
T d1npya1 17 NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTSI 83 (167)
T ss_dssp TSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSST
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhhhhccc--ccchhhheecccc
Confidence 3679999999999999999999996 79999999999988876 2332222221 2478999999873
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=97.54 E-value=6.6e-05 Score=67.02 Aligned_cols=95 Identities=15% Similarity=0.132 Sum_probs=66.4
Q ss_pred CCceEEEEcccHHhHHHHHHHHHC-C-CcEEEEeCChhHHHHHHh-----CCC--CCCCCHHHHhhcCCEEEEeCCCchH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKA-G-YKMAVHDVNCNVMKMFSD-----MGV--PTKETPFEVAEASDVVITMLPSSSH 114 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~-G-~~V~v~dr~~~~~~~l~~-----~g~--~~~~s~~e~~~~aDiVi~~v~~~~~ 114 (355)
...+++|||+|..+..-+..+... + .+|.+|+|++++.+++.+ .|. ..+++++++++.||+|++|++++ .
T Consensus 127 da~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~ADIi~t~Tas~-s 205 (340)
T d1x7da_ 127 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADK-A 205 (340)
T ss_dssp TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCCS-S
T ss_pred CCceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceecCCHHHHHhcCCceeeccccC-C
Confidence 346899999999999998887653 3 469999999998877754 133 45889999999999999998654 1
Q ss_pred HHHHhcCCCccccCCCCCCCeEEEEcCCCCHH
Q 018506 115 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ 146 (355)
Q Consensus 115 ~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~ 146 (355)
...++.. .+++ ++..|...++..|.
T Consensus 206 ~~Pv~~~--~~l~-----pG~hI~aiGs~~p~ 230 (340)
T d1x7da_ 206 YATIITP--DMLE-----PGMHLNAVGGDCPG 230 (340)
T ss_dssp EEEEECG--GGCC-----TTCEEEECSCCBTT
T ss_pred CCcccch--hhcC-----CCCEEeecccchhh
Confidence 1122221 2332 45566556555553
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=97.51 E-value=9.2e-05 Score=62.85 Aligned_cols=82 Identities=17% Similarity=0.203 Sum_probs=56.8
Q ss_pred CCCCCCCceEEEEcccHHhHHHH----HHHHHC--CCcEE-EEeCChhHHHHHHh-CCCC---CCCCHHHHhh--cCCEE
Q 018506 39 QVPSCQFESVGFIGLGNMGFRMA----SNLMKA--GYKMA-VHDVNCNVMKMFSD-MGVP---TKETPFEVAE--ASDVV 105 (355)
Q Consensus 39 ~~~~~~~mkIgiIG~G~mG~~ia----~~L~~~--G~~V~-v~dr~~~~~~~l~~-~g~~---~~~s~~e~~~--~aDiV 105 (355)
.+++.+.+||||||+|.+|..++ ..+.+. +.+|+ ++|+++++.+.+.+ .+.. ..++.+++++ +-|+|
T Consensus 10 ~~~~~k~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~iD~V 89 (237)
T d2nvwa1 10 TVPSSRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMI 89 (237)
T ss_dssp SSGGGCCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEE
T ss_pred cCCCCCCeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcccccceeecchhhccccccccee
Confidence 34445668999999998654443 345443 45655 78999999887765 3433 3578888875 57899
Q ss_pred EEeCCCchHHHHHhc
Q 018506 106 ITMLPSSSHVLDVYN 120 (355)
Q Consensus 106 i~~v~~~~~~~~vl~ 120 (355)
++|+|.....+.+..
T Consensus 90 ~i~tp~~~h~~~~~~ 104 (237)
T d2nvwa1 90 VVSVKVPEHYEVVKN 104 (237)
T ss_dssp EECSCHHHHHHHHHH
T ss_pred eccCCCcchhhHHHH
Confidence 999998766555443
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.48 E-value=9.7e-05 Score=59.30 Aligned_cols=68 Identities=13% Similarity=0.090 Sum_probs=45.9
Q ss_pred CceEEEEcccHHhHH--HHHHHHHC----CCcEEEEeCChhH--HHHHH--------hCCC----CCCCCHHHHhhcCCE
Q 018506 45 FESVGFIGLGNMGFR--MASNLMKA----GYKMAVHDVNCNV--MKMFS--------DMGV----PTKETPFEVAEASDV 104 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~--ia~~L~~~----G~~V~v~dr~~~~--~~~l~--------~~g~----~~~~s~~e~~~~aDi 104 (355)
.|||+|||+|+.|.+ ++..+... .-++.++|+++++ .+.+- ..+. ..+++..++++++|+
T Consensus 1 k~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaDv 80 (169)
T d1s6ya1 1 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADF 80 (169)
T ss_dssp CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSE
T ss_pred CcEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCCCE
Confidence 489999999988754 44444432 1389999998754 32221 1222 245778889999999
Q ss_pred EEEeCCCc
Q 018506 105 VITMLPSS 112 (355)
Q Consensus 105 Vi~~v~~~ 112 (355)
||++...+
T Consensus 81 Vv~ta~~~ 88 (169)
T d1s6ya1 81 VTTQFRVG 88 (169)
T ss_dssp EEECCCTT
T ss_pred EEEccccC
Confidence 99998543
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.43 E-value=0.00065 Score=54.15 Aligned_cols=75 Identities=20% Similarity=0.261 Sum_probs=58.1
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHhCCCCC-----CCCHHHHh--------hcCCEEEEeCCC
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVPT-----KETPFEVA--------EASDVVITMLPS 111 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~-----~~s~~e~~--------~~aDiVi~~v~~ 111 (355)
.+|.|+|+|.+|...+..+...|. +|++.|+++++.+..++.|+.. ..+..+.. ...|+||-|+..
T Consensus 28 d~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid~~G~ 107 (171)
T d1pl8a2 28 HKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECTGA 107 (171)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECSCC
T ss_pred CEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEeccCC
Confidence 479999999999999999999998 6999999999999888887643 22333332 257899999887
Q ss_pred chHHHHHhc
Q 018506 112 SSHVLDVYN 120 (355)
Q Consensus 112 ~~~~~~vl~ 120 (355)
+..++..+.
T Consensus 108 ~~~~~~a~~ 116 (171)
T d1pl8a2 108 EASIQAGIY 116 (171)
T ss_dssp HHHHHHHHH
T ss_pred chhHHHHHH
Confidence 655555443
|
| >d1ks9a1 a.100.1.7 (A:168-291) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Ketopantoate reductase PanE domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=97.34 E-value=0.00032 Score=53.04 Aligned_cols=82 Identities=15% Similarity=0.129 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHcCCC--HHHHHHHHHh---cCCCcccccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHH
Q 018506 237 SMLGVSEALTLGQSLGIS--ASTLTKILNS---SSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASA 311 (355)
Q Consensus 237 ~~~~~~Ea~~la~~~Gi~--~~~~~~~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a 311 (355)
...++.|+..++++.|++ .+...+.+.. ....... ++..++..|++.+-++.. +.+++.+
T Consensus 37 ~~~l~~E~~~va~a~g~~~~~~~~~~~~~~~~~~~~~~~s----SM~qD~~~gr~tEid~i~-----------G~vv~~a 101 (124)
T d1ks9a1 37 IMQICEEVAAVIEREGHHTSAEDLRDYVMQVIDATAENIS----SMLQDIRALRHTEIDYIN-----------GFLLRRA 101 (124)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHTTTCCC----HHHHHHHTTCCCSGGGTH-----------HHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhccCCCCC----hHHHHHHcCCcchHHHHH-----------HHHHHHH
Confidence 445678999999999964 4444443322 1111111 122334455555555543 4799999
Q ss_pred HHhCCCChHHHHHHHHHHHHHH
Q 018506 312 KEVGVDCPLTSQAQDIYAKLCE 333 (355)
Q Consensus 312 ~~~gv~~pi~~~~~~~~~~~~~ 333 (355)
+++|+++|+++.++++++..++
T Consensus 102 ~~~gi~tP~~~~l~~lik~~E~ 123 (124)
T d1ks9a1 102 RAHGIAVPENTRLFEMVKRKES 123 (124)
T ss_dssp HHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHhCCCCcHHHHHHHHHHHHhc
Confidence 9999999999999999987654
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=97.32 E-value=8.3e-05 Score=59.83 Aligned_cols=69 Identities=13% Similarity=0.138 Sum_probs=51.6
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC-----CCCCCCCHHHHhhcCCEEEEeCCCc
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-----GVPTKETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~-----g~~~~~s~~e~~~~aDiVi~~v~~~ 112 (355)
...+|.|+|+|.++.+++..|.+.+-+|++++|++++++.+.+. .+...........++|+||-|+|..
T Consensus 17 ~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~diiIN~tp~g 90 (171)
T d1p77a1 17 PNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAG 90 (171)
T ss_dssp TTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC-
T ss_pred CCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhccccchhhhccccccccceeeeccccc
Confidence 44679999999999999999999888999999999999887652 1111111122245789999998864
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.31 E-value=0.00085 Score=53.31 Aligned_cols=74 Identities=14% Similarity=0.121 Sum_probs=54.8
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCC-------CCHHHH---h-----hcCCEEEEeCC
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK-------ETPFEV---A-----EASDVVITMLP 110 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~-------~s~~e~---~-----~~aDiVi~~v~ 110 (355)
.+|.|+|+|.+|...++.+...|.+|+++++++++.+.+++.|+... .+..+. + ...|+||-|+.
T Consensus 28 ~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~vid~~g 107 (170)
T d1e3ja2 28 TTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDCSG 107 (170)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEECSC
T ss_pred CEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCceeeecCC
Confidence 57999999999999999999999999999999999998888765321 122221 1 23677777777
Q ss_pred CchHHHHHh
Q 018506 111 SSSHVLDVY 119 (355)
Q Consensus 111 ~~~~~~~vl 119 (355)
.+..++..+
T Consensus 108 ~~~~~~~a~ 116 (170)
T d1e3ja2 108 NEKCITIGI 116 (170)
T ss_dssp CHHHHHHHH
T ss_pred ChHHHHHHH
Confidence 655555544
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=97.28 E-value=0.00033 Score=53.30 Aligned_cols=83 Identities=19% Similarity=0.226 Sum_probs=53.4
Q ss_pred ceEEEEcc-cHHhHHHHHHHHHCCCcEE-EEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCC
Q 018506 46 ESVGFIGL-GNMGFRMASNLMKAGYKMA-VHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPN 123 (355)
Q Consensus 46 mkIgiIG~-G~mG~~ia~~L~~~G~~V~-v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~ 123 (355)
|||+|+|+ |+||+.++..+.+.||++. .+|++. .+.+.++|+||=... |+.+.+.++.
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~-----------------~~~~~~~DVvIDFS~-p~~~~~~l~~-- 60 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNG-----------------VEELDSPDVVIDFSS-PEALPKTVDL-- 60 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTE-----------------EEECSCCSEEEECSC-GGGHHHHHHH--
T ss_pred CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCc-----------------HHHhccCCEEEEecC-HHHHHHHHHH--
Confidence 79999996 9999999999999999865 445432 122357898886653 4566665543
Q ss_pred ccccCCCCCCCeEEEEcCCCC-HHHHHHHHHH
Q 018506 124 GLLQGGNSVRPQLLIDSSTID-PQTSRNISAA 154 (355)
Q Consensus 124 ~~l~~~~~~~~~ivi~~st~~-~~~~~~l~~~ 154 (355)
.++ .+.-+|..||+. ++..+.+.+.
T Consensus 61 -~~~-----~~~p~ViGTTG~~~~~~~~i~~~ 86 (128)
T d1vm6a3 61 -CKK-----YRAGLVLGTTALKEEHLQMLREL 86 (128)
T ss_dssp -HHH-----HTCEEEECCCSCCHHHHHHHHHH
T ss_pred -HHh-----cCCCEEEEcCCCCHHHHHHHHHH
Confidence 222 223455666665 4444444443
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=97.21 E-value=0.00051 Score=55.44 Aligned_cols=44 Identities=20% Similarity=0.243 Sum_probs=39.5
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHhCCC
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGV 89 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~~g~ 89 (355)
-+|.|+|+|.+|...+..+...|. +|++.++++++.+.+++.|+
T Consensus 30 ~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa 74 (182)
T d1vj0a2 30 KTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGA 74 (182)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTC
T ss_pred CEEEEECCCccchhheecccccccccccccccccccccccccccc
Confidence 579999999999999999999997 69999999999988887765
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=97.17 E-value=0.00024 Score=55.13 Aligned_cols=64 Identities=17% Similarity=0.232 Sum_probs=44.2
Q ss_pred ceEEEEc-ccHHhHHHHHHHHHCCC--cEEEEeCCh--hHHH----HHHh-----CCCCCCCCHHHHhhcCCEEEEeC
Q 018506 46 ESVGFIG-LGNMGFRMASNLMKAGY--KMAVHDVNC--NVMK----MFSD-----MGVPTKETPFEVAEASDVVITML 109 (355)
Q Consensus 46 mkIgiIG-~G~mG~~ia~~L~~~G~--~V~v~dr~~--~~~~----~l~~-----~g~~~~~s~~e~~~~aDiVi~~v 109 (355)
.||+||| +|.+|..+|..|..++. ++.++|++. ++++ .+.. ......+...+.+++||+|+++.
T Consensus 1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~~~~~~aDiVvita 78 (142)
T d1o6za1 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVITA 78 (142)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTTCSEEEECC
T ss_pred CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCHHHhhhcCEEEEec
Confidence 4899999 69999999999999886 799999643 2322 2322 11122223345567999999985
|
| >d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Biliverdin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.12 E-value=7.1e-05 Score=60.20 Aligned_cols=105 Identities=14% Similarity=0.108 Sum_probs=63.2
Q ss_pred CCCCceEEEEcccHHhHHHHHHHHHCC--CcEEEEeCChhHHHHHHhCCCCCCCCHHHHhh--cCCEEEEeCCCchHHHH
Q 018506 42 SCQFESVGFIGLGNMGFRMASNLMKAG--YKMAVHDVNCNVMKMFSDMGVPTKETPFEVAE--ASDVVITMLPSSSHVLD 117 (355)
Q Consensus 42 ~~~~mkIgiIG~G~mG~~ia~~L~~~G--~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~--~aDiVi~~v~~~~~~~~ 117 (355)
...++||||||+|.||...+..|.+.. ..+.+++....+ ...........+.+|++. +.|+|++|+|+....+-
T Consensus 4 ~~~k~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~e~l~~~~iD~V~I~tp~~~H~~~ 81 (172)
T d1lc0a1 4 NSGKFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRR--ELGSLDEVRQISLEDALRSQEIDVAYICSESSSHEDY 81 (172)
T ss_dssp CCCSEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSS--CCCEETTEEBCCHHHHHHCSSEEEEEECSCGGGHHHH
T ss_pred CCCCcEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEeccchH--HHHHhhccCcCCHHHHHhCCCcchhhhcccccccccc
Confidence 356789999999999999988887542 235555432221 111111222347888875 56899999998766554
Q ss_pred HhcCCCccccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHh
Q 018506 118 VYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVS 156 (355)
Q Consensus 118 vl~~~~~~l~~~~~~~~~ivi~~-st~~~~~~~~l~~~~~ 156 (355)
+.. .++. +-.++++- -+....+.+++.+...
T Consensus 82 ~~~----al~~----gk~V~~EKP~a~~~~e~~~l~~~a~ 113 (172)
T d1lc0a1 82 IRQ----FLQA----GKHVLVEYPMTLSFAAAQELWELAA 113 (172)
T ss_dssp HHH----HHHT----TCEEEEESCSCSCHHHHHHHHHHHH
T ss_pred ccc----cccc----chhhhcCCCccccHHHHHHHHHHHH
Confidence 433 2332 22466653 2345667777766554
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=97.08 E-value=0.0014 Score=52.64 Aligned_cols=36 Identities=25% Similarity=0.369 Sum_probs=28.3
Q ss_pred CceEEEEcccHHhHHHHHHHHHCC-CcEEE-EeCChhH
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAG-YKMAV-HDVNCNV 80 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G-~~V~v-~dr~~~~ 80 (355)
|-||||.|.|++|+.+++.+.++. .+|+. .|+++..
T Consensus 1 MIKVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~ 38 (178)
T d1b7go1 1 MVNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNY 38 (178)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSH
T ss_pred CeEEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcH
Confidence 569999999999999999999864 56554 4565543
|
| >d2pgda1 a.100.1.1 (A:177-473) 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=97.02 E-value=0.0032 Score=54.49 Aligned_cols=97 Identities=20% Similarity=0.162 Sum_probs=64.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHH---hcCCCcccccCCCCCC-------CcccCCCCCC
Q 018506 221 GNGAAAKICNNLTMAVSMLGVSEALTLGQS-LGISASTLTKILN---SSSARCWSSDSYNPVP-------GVMEGVPASR 289 (355)
Q Consensus 221 g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~-~Gi~~~~~~~~~~---~~~~~s~~~~~~~~~~-------~~~~~~~~~~ 289 (355)
|+|+.+||++|.+.+..+++++|++.+.++ .|.+.+++.+++. .+...+|..+...... ..+-..+.+.
T Consensus 1 GsGH~vKMVHNgIEY~~mq~iaE~y~~l~~~~~~~~~~i~~vf~~w~~~~l~syLleit~~il~~kd~~~~~~ld~I~d~ 80 (297)
T d2pgda1 1 GAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFEEWNKTELDSFLIEITASILKFQDADGKHLLPKIRDS 80 (297)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBHHHHHHHHHHHCBCTTSSBSGGGSCCC
T ss_pred CCchhhhhhccHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCCcCcchhhhhcc
Confidence 789999999999999999999999999877 5899888877766 4555566543111000 0000001100
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHH
Q 018506 290 NYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQ 325 (355)
Q Consensus 290 ~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~ 325 (355)
.-..| + =...++.|-++|+|+|++..++
T Consensus 81 a~~kG-T-------G~Wt~~~Al~lgvp~p~I~~Av 108 (297)
T d2pgda1 81 AGQKG-T-------GKWTAISALEYGVPVTLIGEAV 108 (297)
T ss_dssp CCCCS-H-------HHHHHHHHHHHTCCCHHHHHHH
T ss_pred ccCCC-c-------hHHHHHHHHHcCCCchHHHHHH
Confidence 00001 1 1367899999999999998876
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.00 E-value=0.00023 Score=55.40 Aligned_cols=91 Identities=9% Similarity=-0.014 Sum_probs=54.5
Q ss_pred CceEEEEcc-cHHhHHHHHHHHHCCC---cEEEEeCChhHHHHHHhCC--CCCCCCHHHHhhcCCEEEEeCCCchHHHHH
Q 018506 45 FESVGFIGL-GNMGFRMASNLMKAGY---KMAVHDVNCNVMKMFSDMG--VPTKETPFEVAEASDVVITMLPSSSHVLDV 118 (355)
Q Consensus 45 ~mkIgiIG~-G~mG~~ia~~L~~~G~---~V~v~dr~~~~~~~l~~~g--~~~~~s~~e~~~~aDiVi~~v~~~~~~~~v 118 (355)
.|||||||+ |..|.-+.+.|.+.+| ++.....+...-+.+...+ ....+...+...++|++|+|+|...+ ...
T Consensus 2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~~~~~~~~~~~~~~~~~d~vf~a~p~~~s-~~~ 80 (144)
T d2hjsa1 2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFDFSSVGLAFFAAAAEVS-RAH 80 (144)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGGCCGGGCSEEEECSCHHHH-HHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeeccccchhccchhhhhccceEEEecCCcchh-hhh
Confidence 489999977 9999999999987766 4554432222111111111 11122223445789999999986533 333
Q ss_pred hcCCCccccCCCCCCCeEEEEcCCCC
Q 018506 119 YNGPNGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 119 l~~~~~~l~~~~~~~~~ivi~~st~~ 144 (355)
... +.+ ++..|||.|+..
T Consensus 81 ~~~---~~~-----~g~~VID~Ss~f 98 (144)
T d2hjsa1 81 AER---ARA-----AGCSVIDLSGAL 98 (144)
T ss_dssp HHH---HHH-----TTCEEEETTCTT
T ss_pred ccc---ccc-----CCceEEeechhh
Confidence 221 222 456899988865
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=97.00 E-value=0.0005 Score=55.62 Aligned_cols=69 Identities=7% Similarity=0.092 Sum_probs=50.7
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHh--------CCCC-------CCCCHHHHhhcCCEEEE
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSD--------MGVP-------TKETPFEVAEASDVVIT 107 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~--------~g~~-------~~~s~~e~~~~aDiVi~ 107 (355)
+-.+|.|||+|.+|.+++..|.+.|. +++++||++++.+++.. .... ......+....+|+||-
T Consensus 17 ~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~diiIN 96 (182)
T d1vi2a1 17 KGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILTN 96 (182)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEEEE
T ss_pred CCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhcccceecc
Confidence 44789999999999999999999987 69999999876654332 1110 11123455678999999
Q ss_pred eCCCc
Q 018506 108 MLPSS 112 (355)
Q Consensus 108 ~v~~~ 112 (355)
|+|..
T Consensus 97 ~Tp~G 101 (182)
T d1vi2a1 97 GTKVG 101 (182)
T ss_dssp CSSTT
T ss_pred ccCCc
Confidence 99853
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=96.99 E-value=0.00077 Score=56.41 Aligned_cols=94 Identities=18% Similarity=0.186 Sum_probs=66.1
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh-CCCCCCCCHHHH-hhcCCEEEEeCCCchHHHHHhc
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-MGVPTKETPFEV-AEASDVVITMLPSSSHVLDVYN 120 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~-~g~~~~~s~~e~-~~~aDiVi~~v~~~~~~~~vl~ 120 (355)
..-++|.|-|.|++|..+|+.|.+.|..|++.|.+++.++.+.. .+.... ++.+. -.+|||++-|--...--++...
T Consensus 37 l~g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g~~~~-~~~~~~~~~cDIl~PcA~~~~I~~~~~~ 115 (230)
T d1leha1 37 LEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAV-APNAIYGVTCDIFAPCALGAVLNDFTIP 115 (230)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEEC-CGGGTTTCCCSEEEECSCSCCBSTTHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcCCccc-CCcccccccccEecccccccccChHHhh
Confidence 45688999999999999999999999999999999999887766 444443 44444 3589999988543321111111
Q ss_pred CCCccccCCCCCCCeEEEEcCCCCHHH
Q 018506 121 GPNGLLQGGNSVRPQLLIDSSTIDPQT 147 (355)
Q Consensus 121 ~~~~~l~~~~~~~~~ivi~~st~~~~~ 147 (355)
. + +-++|+...++.|.+
T Consensus 116 ~----l------~ak~Ive~ANn~~t~ 132 (230)
T d1leha1 116 Q----L------KAKVIAGSADNQLKD 132 (230)
T ss_dssp H----C------CCSEECCSCSCCBSS
T ss_pred c----c------CccEEEecccCCCCC
Confidence 1 1 235788777676643
|
| >d1pgja1 a.100.1.1 (A:179-478) 6-phosphogluconate dehydrogenase (6PGD) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Trypanosoma brucei [TaxId: 5691]
Probab=96.99 E-value=0.0016 Score=56.73 Aligned_cols=96 Identities=18% Similarity=0.224 Sum_probs=64.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh---c-CCCcccccCCCCCC-------CcccCCCCCC
Q 018506 221 GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNS---S-SARCWSSDSYNPVP-------GVMEGVPASR 289 (355)
Q Consensus 221 g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~---~-~~~s~~~~~~~~~~-------~~~~~~~~~~ 289 (355)
|+|+.+||++|.+.+..+++++|++.+.+..|.+.+++.+++.. + ...||..+...... +.+-..+.+.
T Consensus 1 GsGH~vKmvHNgIEy~~mq~iaE~~~~l~~~~~~~~~i~~~f~~w~~~~~l~syL~eit~~il~~~d~~g~~l~d~I~d~ 80 (300)
T d1pgja1 1 GAGSCVKMYHNSGEYAILQIWGEVFDILRAMGLNNDEVAAVLEDWKSKNFLKSYMLDISIAAARAKDKDGSYLTEHVMDR 80 (300)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSTTCBHHHHHHHHHHHCBCTTSSBGGGGBCCC
T ss_pred CCccchhhhcchHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCeehHHHHHHHHHHHhhcCCCCchhHHHhccc
Confidence 78999999999999999999999999999999999887777653 3 34566432111000 0000001000
Q ss_pred CCCCCcchhhHHHHH-HHHHHHHHHhCCCChHHHHHH
Q 018506 290 NYGGGFASKLMAKDL-NLALASAKEVGVDCPLTSQAQ 325 (355)
Q Consensus 290 ~~~~~~~~~~~~kd~-~~~~~~a~~~gv~~pi~~~~~ 325 (355)
-. .|.. ...+..|-++|+|+|++.+++
T Consensus 81 --a~-------~kGTG~Wt~~~al~~gvp~p~i~~Av 108 (300)
T d1pgja1 81 --IG-------SKGTGLWSAQEALEIGVPAPSLNMAV 108 (300)
T ss_dssp --CC-------CCSHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred --cc-------CCchHHHHHHHHHHcCCCccHHHHHH
Confidence 00 0111 367888999999999987766
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=96.99 E-value=0.00049 Score=55.54 Aligned_cols=39 Identities=23% Similarity=0.462 Sum_probs=34.8
Q ss_pred CCCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 41 PSCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 41 ~~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
+..+..||+|||.|..|..-|..|+++||+|++|++++.
T Consensus 39 ~~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~ 77 (179)
T d1ps9a3 39 PAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSE 77 (179)
T ss_dssp SCSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred CCCCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCc
Confidence 344567899999999999999999999999999999764
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.95 E-value=0.00032 Score=55.18 Aligned_cols=67 Identities=15% Similarity=0.130 Sum_probs=47.6
Q ss_pred CCceEEEEcc-cHHhHHHHHHHHHCCC-------cEEEEeCChh--HHHHHH----hC------CCCCCCCHHHHhhcCC
Q 018506 44 QFESVGFIGL-GNMGFRMASNLMKAGY-------KMAVHDVNCN--VMKMFS----DM------GVPTKETPFEVAEASD 103 (355)
Q Consensus 44 ~~mkIgiIG~-G~mG~~ia~~L~~~G~-------~V~v~dr~~~--~~~~l~----~~------g~~~~~s~~e~~~~aD 103 (355)
+-|||+|||+ |.+|..++..|+..+. ++.++|.+.. +++.+. .. .....++..++++++|
T Consensus 2 ~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 81 (154)
T d5mdha1 2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLD 81 (154)
T ss_dssp CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCS
T ss_pred CceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccCCce
Confidence 3479999995 9999999999986542 4677776553 333321 11 1334567889999999
Q ss_pred EEEEeCC
Q 018506 104 VVITMLP 110 (355)
Q Consensus 104 iVi~~v~ 110 (355)
+||++-.
T Consensus 82 vVVitag 88 (154)
T d5mdha1 82 VAILVGS 88 (154)
T ss_dssp EEEECCS
T ss_pred EEEEecc
Confidence 9999863
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=96.95 E-value=0.00074 Score=50.32 Aligned_cols=70 Identities=17% Similarity=0.344 Sum_probs=57.0
Q ss_pred ceEEEEc----ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcC
Q 018506 46 ESVGFIG----LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 121 (355)
Q Consensus 46 mkIgiIG----~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~ 121 (355)
++|+||| .+..|..+.+.|.+.||+|+-++.+.+.+ .|.....++.|+-...|++++++|. +.+.+++++
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i-----~G~~~y~sl~~lp~~~D~vvi~vp~-~~~~~~l~~ 75 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI-----EGLKCYRSVRELPKDVDVIVFVVPP-KVGLQVAKE 75 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----TTEECBSSGGGSCTTCCEEEECSCH-HHHHHHHHH
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccccc-----cCccccccchhccccceEEEEEeCH-HHHHHHHHH
Confidence 5799999 57899999999999999988887654332 4677888999988889999999986 466666664
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=96.95 E-value=0.00073 Score=52.52 Aligned_cols=93 Identities=18% Similarity=0.295 Sum_probs=53.1
Q ss_pred CceEEEEcc-cHHhHHHHHHHHHC-CC---cEEEEeCChhHHHH--HHhCCCCC-CCCHHHHhhcCCEEEEeCCCchHHH
Q 018506 45 FESVGFIGL-GNMGFRMASNLMKA-GY---KMAVHDVNCNVMKM--FSDMGVPT-KETPFEVAEASDVVITMLPSSSHVL 116 (355)
Q Consensus 45 ~mkIgiIG~-G~mG~~ia~~L~~~-G~---~V~v~dr~~~~~~~--l~~~g~~~-~~s~~e~~~~aDiVi~~v~~~~~~~ 116 (355)
|.||||||+ |.+|.-+.+.|.++ .| +++.+..+...-.. ........ .....+..+++|++|+|+|... .+
T Consensus 1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~~~~~~~~~~~~DivF~a~~~~~-s~ 79 (146)
T d1t4ba1 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEALKALDIIVTCQGGDY-TN 79 (146)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHHHHTCSEEEECSCHHH-HH
T ss_pred CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCceeeecccchhhhhcCcEEEEecCchH-HH
Confidence 468999987 99999999887764 33 35555544322111 11111111 1223345679999999998753 33
Q ss_pred HHhcCCCccccCCCCCCCeEEEEcCCCC
Q 018506 117 DVYNGPNGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 117 ~vl~~~~~~l~~~~~~~~~ivi~~st~~ 144 (355)
..... +.+.. .+.+|||.|+..
T Consensus 80 ~~~~~---~~~~g---~~~~VID~Ss~f 101 (146)
T d1t4ba1 80 EIYPK---LRESG---WQGYWIDAASSL 101 (146)
T ss_dssp HHHHH---HHHTT---CCCEEEECSSTT
T ss_pred HhhHH---HHhcC---CCeecccCCccc
Confidence 33322 22211 224788988854
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=96.94 E-value=0.00024 Score=55.95 Aligned_cols=65 Identities=12% Similarity=0.216 Sum_probs=45.2
Q ss_pred CceEEEEcc-cHHhHHHHHHHHHCCC-------cEEEE--eCChhHHHHHH----hC------CCCCCCCHHHHhhcCCE
Q 018506 45 FESVGFIGL-GNMGFRMASNLMKAGY-------KMAVH--DVNCNVMKMFS----DM------GVPTKETPFEVAEASDV 104 (355)
Q Consensus 45 ~mkIgiIG~-G~mG~~ia~~L~~~G~-------~V~v~--dr~~~~~~~l~----~~------g~~~~~s~~e~~~~aDi 104 (355)
-|||+|||+ |.+|..++..|+..++ ...++ +++.++.+... .. .....++..++++++|+
T Consensus 4 p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~adv 83 (154)
T d1y7ta1 4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDADY 83 (154)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhhhcccccE
Confidence 369999996 9999999999998653 12333 34444444332 11 23345677889999999
Q ss_pred EEEeC
Q 018506 105 VITML 109 (355)
Q Consensus 105 Vi~~v 109 (355)
||++-
T Consensus 84 Viita 88 (154)
T d1y7ta1 84 ALLVG 88 (154)
T ss_dssp EEECC
T ss_pred EEeec
Confidence 99986
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=96.92 E-value=0.00048 Score=57.98 Aligned_cols=35 Identities=23% Similarity=0.363 Sum_probs=32.0
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCCh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 78 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~ 78 (355)
+.+||.|||+|.+|.+.|..|+++|++|++++|++
T Consensus 5 ~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~ 39 (268)
T d1c0pa1 5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARDL 39 (268)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 34689999999999999999999999999999853
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.90 E-value=0.0012 Score=52.95 Aligned_cols=74 Identities=16% Similarity=0.087 Sum_probs=52.8
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHhCCCCCC-----CCHHHHh------hcCCEEEEeCCCch
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVPTK-----ETPFEVA------EASDVVITMLPSSS 113 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~~-----~s~~e~~------~~aDiVi~~v~~~~ 113 (355)
-+|.|+|+|.+|...++.+...|. .|++.|+++++.+..++.|+..+ .+..+.+ ...|+||-|+..+.
T Consensus 29 ~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~g~~~ 108 (174)
T d1jqba2 29 SSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAGGGSE 108 (174)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEECSSCTT
T ss_pred CEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEccCCHH
Confidence 469999999999999999999996 69999999999888887775322 1222221 12677777776554
Q ss_pred HHHHHh
Q 018506 114 HVLDVY 119 (355)
Q Consensus 114 ~~~~vl 119 (355)
.+++.+
T Consensus 109 ~~~~a~ 114 (174)
T d1jqba2 109 TLSQAV 114 (174)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 455444
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.83 E-value=0.00024 Score=57.30 Aligned_cols=68 Identities=12% Similarity=0.127 Sum_probs=51.5
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC-----CCC-----CCCCHHHHhhcCCEEEEeCCCc
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-----GVP-----TKETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~-----g~~-----~~~s~~e~~~~aDiVi~~v~~~ 112 (355)
+-.+|-|||+|..+.+++..|.+.| +|++++|++++++.+.+. ... ...+.......+|+||.|+|..
T Consensus 17 ~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliIn~tp~g 94 (177)
T d1nvta1 17 KDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATPIG 94 (177)
T ss_dssp CSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSCTT
T ss_pred CCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhccchhhhhccCCccc
Confidence 4468999999999999999998776 899999999998877541 110 1123334456799999998864
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=96.82 E-value=0.0012 Score=53.75 Aligned_cols=44 Identities=16% Similarity=0.209 Sum_probs=37.8
Q ss_pred CCCceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 43 CQFESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 43 ~~~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
.+-.+|-|.| .|.+|..+++.|++.|.+|++.+|++++.+.+.+
T Consensus 21 l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~ 65 (191)
T d1luaa1 21 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAAD 65 (191)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHH
Confidence 3446677777 7999999999999999999999999999877654
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.81 E-value=0.0022 Score=51.19 Aligned_cols=36 Identities=22% Similarity=0.373 Sum_probs=27.9
Q ss_pred CceEEEEcccHHhHHHHHHHHHCC-CcE-EEEeCChhH
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAG-YKM-AVHDVNCNV 80 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G-~~V-~v~dr~~~~ 80 (355)
++||||.|.|++|+.+.+.+.+.. .+| .+.|.+++.
T Consensus 2 ~irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~~ 39 (172)
T d2czca2 2 KVKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDF 39 (172)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSH
T ss_pred cEEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCChH
Confidence 479999999999999999998754 454 455666544
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=96.80 E-value=0.00074 Score=53.47 Aligned_cols=101 Identities=17% Similarity=0.135 Sum_probs=61.9
Q ss_pred CCCceEEEEcc-cHHhHHHHHHHHHC-CCcE-EEEeCChhHH-----HH---HHhCCCCCCCCHHHHhhcCCEEEEeCCC
Q 018506 43 CQFESVGFIGL-GNMGFRMASNLMKA-GYKM-AVHDVNCNVM-----KM---FSDMGVPTKETPFEVAEASDVVITMLPS 111 (355)
Q Consensus 43 ~~~mkIgiIG~-G~mG~~ia~~L~~~-G~~V-~v~dr~~~~~-----~~---l~~~g~~~~~s~~e~~~~aDiVi~~v~~ 111 (355)
.+.+||+|+|+ |+||+.+++.+.+. +.++ .+++|..... .. ....++...+++++..+.+|+||=...
T Consensus 2 ~s~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~DViIDFs~- 80 (162)
T d1diha1 2 DANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTR- 80 (162)
T ss_dssp CCBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECSC-
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceeeccHHHHhcccceEEEecc-
Confidence 35699999995 99999999998875 4554 3556543211 11 112345667788888889999887764
Q ss_pred chHHHHHhcCCCccccCCCCCCCeEEEEcCCCC-HHHHHHHH
Q 018506 112 SSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID-PQTSRNIS 152 (355)
Q Consensus 112 ~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~-~~~~~~l~ 152 (355)
|..+.+.++. ..+ .+.-+|..||+. .+....+.
T Consensus 81 p~~~~~~~~~---a~~-----~~~~~ViGTTG~~~~~~~~i~ 114 (162)
T d1diha1 81 PEGTLNHLAF---CRQ-----HGKGMVIGTTGFDEAGKQAIR 114 (162)
T ss_dssp HHHHHHHHHH---HHH-----TTCEEEECCCCCCHHHHHHHH
T ss_pred HHHHHHHHHH---HHh-----ccceeEEecCCCcHHHHHHHH
Confidence 4566665542 222 233455566665 44333333
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=96.80 E-value=0.0034 Score=49.37 Aligned_cols=76 Identities=18% Similarity=0.189 Sum_probs=58.5
Q ss_pred CCCceEEEEcccH-HhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcC
Q 018506 43 CQFESVGFIGLGN-MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 121 (355)
Q Consensus 43 ~~~mkIgiIG~G~-mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~ 121 (355)
..-++|.|||-+. +|.+++..|.+.|..|++++... .++.+.++++|+||.++..+.. +.
T Consensus 35 l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t--------------~~l~~~~~~ADivI~a~G~p~~----i~- 95 (166)
T d1b0aa1 35 TFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT--------------KNLRHHVENADLLIVAVGKPGF----IP- 95 (166)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC--------------SCHHHHHHHCSEEEECSCCTTC----BC-
T ss_pred cccceEEEEeccccccHHHHHHHHHhhcccccccccc--------------chhHHHHhhhhHhhhhccCccc----cc-
Confidence 3457899999988 99999999999999999997542 3567778899999999987633 22
Q ss_pred CCccccCCCCCCCeEEEEcCCC
Q 018506 122 PNGLLQGGNSVRPQLLIDSSTI 143 (355)
Q Consensus 122 ~~~~l~~~~~~~~~ivi~~st~ 143 (355)
..+++ ++.++||....
T Consensus 96 -~~~vk-----~g~vvIDvGi~ 111 (166)
T d1b0aa1 96 -GDWIK-----EGAIVIDVGIN 111 (166)
T ss_dssp -TTTSC-----TTCEEEECCCE
T ss_pred -ccccC-----CCcEEEecCce
Confidence 12443 56799998654
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=96.78 E-value=0.0032 Score=46.35 Aligned_cols=68 Identities=13% Similarity=0.177 Sum_probs=46.8
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhH-HHHHHhC-CCCC---CCCHHHHhhcCCEEEEeCCCc
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNV-MKMFSDM-GVPT---KETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~-~~~l~~~-g~~~---~~s~~e~~~~aDiVi~~v~~~ 112 (355)
+..+|.|||.|.+|..-++.|.+.|.+|++++...+. ...+.+. ++.. .-+. +.+.++++|+.+..++
T Consensus 11 ~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~~-~dl~~~~lv~~at~d~ 83 (113)
T d1pjqa1 11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDE-TLLDSCWLAIAATDDD 83 (113)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCG-GGGTTCSEEEECCSCH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHHhcCCceeeccCCCH-HHhCCCcEEeecCCCH
Confidence 4478999999999999999999999999999865443 2333332 2211 1122 2345778888777654
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=96.78 E-value=0.00062 Score=57.66 Aligned_cols=36 Identities=19% Similarity=0.226 Sum_probs=33.2
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
..+||.|||+|.-|...|..|+++|++|++++|+++
T Consensus 3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~ 38 (265)
T d2voua1 3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ 38 (265)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 458899999999999999999999999999998754
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=96.71 E-value=0.00057 Score=58.49 Aligned_cols=33 Identities=21% Similarity=0.335 Sum_probs=31.3
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCCh
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 78 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~ 78 (355)
|+|+|||+|.-|...|..|+++|++|+++++++
T Consensus 1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 33 (347)
T d2ivda1 1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSA 33 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 789999999999999999999999999999864
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=96.64 E-value=0.0046 Score=49.34 Aligned_cols=90 Identities=20% Similarity=0.274 Sum_probs=57.0
Q ss_pred CceEEEEc-ccHHhHHHHHHHHHCCC-cEEEE-eCC-hh-HHHHHHh--CC--CCCCCCHHHHhhcCCEEEEeCCCchHH
Q 018506 45 FESVGFIG-LGNMGFRMASNLMKAGY-KMAVH-DVN-CN-VMKMFSD--MG--VPTKETPFEVAEASDVVITMLPSSSHV 115 (355)
Q Consensus 45 ~mkIgiIG-~G~mG~~ia~~L~~~G~-~V~v~-dr~-~~-~~~~l~~--~g--~~~~~s~~e~~~~aDiVi~~v~~~~~~ 115 (355)
|+||||+| .|..|.-+.+.|.++-+ ++... .++ .. ++..... .+ .....+.++..+++|++|+|+|.....
T Consensus 1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~~~~dvvf~a~p~~~s~ 80 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAGASY 80 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTTHHH
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhccccccccCHhHhccccceEEEccccHHHH
Confidence 68999995 69999999999987543 44433 332 11 1222211 11 122346667777899999999987543
Q ss_pred HHHhcCCCccccCCCCCCCeEEEEcCCCCH
Q 018506 116 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDP 145 (355)
Q Consensus 116 ~~vl~~~~~~l~~~~~~~~~ivi~~st~~~ 145 (355)
+.... . .+..|||.|+-.-
T Consensus 81 -~~~~~----~------~~~~VIDlSadfR 99 (176)
T d1vkna1 81 -DLVRE----L------KGVKIIDLGADFR 99 (176)
T ss_dssp -HHHTT----C------CSCEEEESSSTTT
T ss_pred -HHHHh----h------ccceEEecCcccc
Confidence 33321 1 3468999999764
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=96.63 E-value=0.0016 Score=48.02 Aligned_cols=36 Identities=19% Similarity=0.299 Sum_probs=33.0
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
...||||||.|-+|..|+....+.|+++.++|.+++
T Consensus 10 ~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~ 45 (111)
T d1kjqa2 10 AATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD 45 (111)
T ss_dssp TCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence 346899999999999999999999999999998765
|
| >d1txga1 a.100.1.6 (A:181-335) Glycerol-3-phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Glycerol-3-phosphate dehydrogenase domain: Glycerol-3-phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.63 E-value=0.00053 Score=53.92 Aligned_cols=106 Identities=15% Similarity=0.085 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCC--CcccccCCCCCCCcccCCCCCCCCCCCcch----------
Q 018506 230 NNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSA--RCWSSDSYNPVPGVMEGVPASRNYGGGFAS---------- 297 (355)
Q Consensus 230 ~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~--~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 297 (355)
.|...+.+...+.|+..+++++|.++++++++..-++. ++.. .+++..+.. +..|.+.
T Consensus 34 ~N~~aali~~g~~Em~~~~~~~g~~~~t~~~~aGiGDLi~Tc~~--sRN~~~G~~--------l~~G~~~~e~~~~~~~~ 103 (155)
T d1txga1 34 SNAKGVIATRAINEMAELIEILGGDRETAFGLSGFGDLIATFRG--GRNGMLGEL--------LGKGLSIDEAMEELERR 103 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCGGGGGSTTTHHHHHHTTTC--HHHHHHHHH--------HHTTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHhhHHHhhcccchhhcccchhhhHHhhcCC--CCccHHHHH--------HhhhhhHHHHHHHhccc
Confidence 58888899999999999999999999998765544431 2211 222211111 0112222
Q ss_pred ----hhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHHHHHHHhcCC
Q 018506 298 ----KLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGK 352 (355)
Q Consensus 298 ----~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~~~ 352 (355)
......+..+.+++++.++++|+++.+++++. ++.|...+++.+..++
T Consensus 104 ~~~~vEG~~t~~~v~~l~~~~~i~~Pi~~~vy~Il~-------~~~~~~~~i~~L~~Rk 155 (155)
T d1txga1 104 GVGVVEGYKTAEKAYRLSSKINADTKLLDSIYRVLY-------EGLKVEEVLFELATFK 155 (155)
T ss_dssp TCCCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH-------SCCCHHHHHHHHHTTC
T ss_pred cccchHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHh-------CcCCHHHHHHHHHcCC
Confidence 23444466788999999999999999999986 4567777777776553
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.62 E-value=0.0017 Score=53.68 Aligned_cols=67 Identities=10% Similarity=0.111 Sum_probs=48.5
Q ss_pred CCceEEEEc-ccHHhHHHHHHHHHCCCcEEE--EeCChhHHHHHHhC------CCCCCCCHHHHhhcCCEEEEeCC
Q 018506 44 QFESVGFIG-LGNMGFRMASNLMKAGYKMAV--HDVNCNVMKMFSDM------GVPTKETPFEVAEASDVVITMLP 110 (355)
Q Consensus 44 ~~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v--~dr~~~~~~~l~~~------g~~~~~s~~e~~~~aDiVi~~v~ 110 (355)
.|++|.|.| .|.+|+.+++.|+++||+|.+ ..|++++.+.+... ...-..+..++++++|.||.+..
T Consensus 2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~a~ 77 (252)
T d2q46a1 2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTS 77 (252)
T ss_dssp SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccCCcEEEEeeeccccccccccccceeeEEEEe
Confidence 478999997 799999999999999987554 46888877665432 01112234456778999988764
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=96.60 E-value=0.0015 Score=55.55 Aligned_cols=41 Identities=24% Similarity=0.388 Sum_probs=35.6
Q ss_pred ceEEEE--cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 46 ESVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 46 mkIgiI--G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
+||++| |.+.+|.++|+.|++.|++|.+.+|++++++++.+
T Consensus 1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~ 43 (255)
T d1gega_ 1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVAS 43 (255)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 478888 66779999999999999999999999998876543
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.57 E-value=0.0024 Score=50.30 Aligned_cols=46 Identities=17% Similarity=0.312 Sum_probs=41.1
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP 90 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~ 90 (355)
-.+|.|+|+|.+|...+..+...|.+|++.++++++.+..++.|+.
T Consensus 28 g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga~ 73 (166)
T d1llua2 28 GQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGAS 73 (166)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCS
T ss_pred CCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCcc
Confidence 3579999999999999999999999999999999999988887754
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.57 E-value=0.0018 Score=49.72 Aligned_cols=71 Identities=10% Similarity=0.222 Sum_probs=57.6
Q ss_pred ceEEEEcc----cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcC
Q 018506 46 ESVGFIGL----GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 121 (355)
Q Consensus 46 mkIgiIG~----G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~ 121 (355)
.+|+|||+ +..|..++.+|.+.||+|+.++...+.+ .|.....++.|+-...|++++++|. +.+.+++++
T Consensus 20 ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i-----~G~~~~~sl~dlp~~iD~v~i~vp~-~~~~~~~~e 93 (139)
T d2d59a1 20 KKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEV-----LGRKCYPSVLDIPDKIEVVDLFVKP-KLTMEYVEQ 93 (139)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----TTEECBSSGGGCSSCCSEEEECSCH-HHHHHHHHH
T ss_pred CeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCccccc-----CCCcccccccccCccceEEEEEeCH-HHHHHHHHH
Confidence 57999996 5799999999999999988887653211 5677888999988899999999985 577777765
Q ss_pred C
Q 018506 122 P 122 (355)
Q Consensus 122 ~ 122 (355)
.
T Consensus 94 ~ 94 (139)
T d2d59a1 94 A 94 (139)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.55 E-value=0.0033 Score=49.47 Aligned_cols=46 Identities=17% Similarity=0.327 Sum_probs=41.0
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP 90 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~ 90 (355)
..+|.|+|+|.+|...+..+...|.+|++.++++++.+.+++.|+.
T Consensus 28 g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~ 73 (168)
T d1rjwa2 28 GEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGAD 73 (168)
T ss_dssp TCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCS
T ss_pred CCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcc
Confidence 3679999999999999999999999999999999999988887643
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.53 E-value=0.0072 Score=47.76 Aligned_cols=77 Identities=12% Similarity=0.091 Sum_probs=59.5
Q ss_pred CCCceEEEEcccH-HhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcC
Q 018506 43 CQFESVGFIGLGN-MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 121 (355)
Q Consensus 43 ~~~mkIgiIG~G~-mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~ 121 (355)
..-.+|.|||-+. +|.+++..|.+.|..|++++... .++.+..+++|+||.++..+..++.
T Consensus 37 l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t--------------~~l~~~~~~aDivi~a~G~~~~i~~---- 98 (170)
T d1a4ia1 37 IAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT--------------AHLDEEVNKGDILVVATGQPEMVKG---- 98 (170)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------SSHHHHHTTCSEEEECCCCTTCBCG----
T ss_pred cccceEEEEecCCccchHHHHHHHhccCceEEEeccc--------------ccHHHHHhhccchhhcccccccccc----
Confidence 3457899999976 99999999999999999998642 3456677899999999987633222
Q ss_pred CCccccCCCCCCCeEEEEcCCCC
Q 018506 122 PNGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 122 ~~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.+++ ++.++||.....
T Consensus 99 --~~vk-----~g~iviDvgi~~ 114 (170)
T d1a4ia1 99 --EWIK-----PGAIVIDCGINY 114 (170)
T ss_dssp --GGSC-----TTCEEEECCCBC
T ss_pred --cccc-----CCCeEeccCccc
Confidence 2443 567999997765
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=96.52 E-value=0.0021 Score=54.77 Aligned_cols=40 Identities=18% Similarity=0.284 Sum_probs=35.7
Q ss_pred eEEEE--cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 47 SVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 47 kIgiI--G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
||++| |.+.+|.++|+.|++.|++|.+++|++++++++.+
T Consensus 3 KValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~ 44 (257)
T d2rhca1 3 EVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLK 44 (257)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 78888 77789999999999999999999999988876653
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.51 E-value=0.0015 Score=51.83 Aligned_cols=75 Identities=13% Similarity=0.200 Sum_probs=54.8
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCC---CCHHHH---hhcCCEEEEeCCCchHHHHH
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK---ETPFEV---AEASDVVITMLPSSSHVLDV 118 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~---~s~~e~---~~~aDiVi~~v~~~~~~~~v 118 (355)
-.+|.|+|+|.+|...++.+...|.++++.++++++.+..++.|+..+ .+.... .+..|++|.++..+..++..
T Consensus 31 G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~~~~~~~~ 110 (168)
T d1uufa2 31 GKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHNLDDF 110 (168)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCCCHHHH
T ss_pred CCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeeecchhHHHH
Confidence 367999999999999999999999999999999999887777665422 122211 23477788777665555554
Q ss_pred h
Q 018506 119 Y 119 (355)
Q Consensus 119 l 119 (355)
+
T Consensus 111 ~ 111 (168)
T d1uufa2 111 T 111 (168)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.50 E-value=0.0032 Score=50.12 Aligned_cols=76 Identities=12% Similarity=0.151 Sum_probs=52.5
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCc-EEEEeCChhHHHHHHhCCCCC-----CCCHHHHhh-----cCCEEEEeCCCc
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYK-MAVHDVNCNVMKMFSDMGVPT-----KETPFEVAE-----ASDVVITMLPSS 112 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~-V~v~dr~~~~~~~l~~~g~~~-----~~s~~e~~~-----~aDiVi~~v~~~ 112 (355)
.-.+|.|+|+|.+|...+..+...|.. |++.++++++.+..++.|+.. ..+..+.++ ..|+||.|+..+
T Consensus 28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~vid~~G~~ 107 (174)
T d1f8fa2 28 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTGSP 107 (174)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSCCH
T ss_pred CCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcEEEEcCCcH
Confidence 346799999999999999999888876 567799999998888766531 123333322 257777777655
Q ss_pred hHHHHHh
Q 018506 113 SHVLDVY 119 (355)
Q Consensus 113 ~~~~~vl 119 (355)
..++..+
T Consensus 108 ~~~~~~~ 114 (174)
T d1f8fa2 108 EILKQGV 114 (174)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=96.44 E-value=0.006 Score=48.54 Aligned_cols=74 Identities=15% Similarity=0.240 Sum_probs=55.2
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHhCCCCCCCC-------HHHHh-----hcCCEEEEeCCCc
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVPTKET-------PFEVA-----EASDVVITMLPSS 112 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~~~s-------~~e~~-----~~aDiVi~~v~~~ 112 (355)
.+|.|+|+|.+|...++.+...|. +|++.|+++++.+...+.|+..+-+ ..+.. ...|++|.++..+
T Consensus 29 ~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~vid~~g~~ 108 (174)
T d1p0fa2 29 STCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAGRI 108 (174)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCH
T ss_pred CEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcEEEEcCCCc
Confidence 579999999999999999999986 6889999999999988888664321 12221 2367777777665
Q ss_pred hHHHHHh
Q 018506 113 SHVLDVY 119 (355)
Q Consensus 113 ~~~~~vl 119 (355)
...+..+
T Consensus 109 ~~~~~~~ 115 (174)
T d1p0fa2 109 ETMMNAL 115 (174)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 5555544
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=96.43 E-value=0.0053 Score=48.77 Aligned_cols=35 Identities=23% Similarity=0.419 Sum_probs=27.4
Q ss_pred CceEEEEcccHHhHHHHHHHHHCC-CcEE-EEeCChh
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAG-YKMA-VHDVNCN 79 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G-~~V~-v~dr~~~ 79 (355)
|.||||-|.|++|+.+.+.+.+.+ .+|. +.++++.
T Consensus 1 M~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~ 37 (171)
T d1cf2o1 1 MKAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPD 37 (171)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCS
T ss_pred CeEEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcH
Confidence 578999999999999999998775 4544 4466544
|
| >d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: GDP-mannose 6-dehydrogenase, GDP-binding domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.43 E-value=0.0056 Score=46.62 Aligned_cols=93 Identities=22% Similarity=0.281 Sum_probs=65.9
Q ss_pred CCceEEEEcc----------cHHhHHHHHHHHHCCCcEEEEeCChhHHH-------HH----HhCCCCCCCCHHHHhhcC
Q 018506 44 QFESVGFIGL----------GNMGFRMASNLMKAGYKMAVHDVNCNVMK-------MF----SDMGVPTKETPFEVAEAS 102 (355)
Q Consensus 44 ~~mkIgiIG~----------G~mG~~ia~~L~~~G~~V~v~dr~~~~~~-------~l----~~~g~~~~~s~~e~~~~a 102 (355)
...||+|+|+ +.-...++..|.+.|.+|.+||..-+..+ .+ ...+....+++.++++++
T Consensus 12 ~~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~~~ 91 (136)
T d1mv8a3 12 DTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVASS 91 (136)
T ss_dssp SCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHHHHC
T ss_pred CCCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHhhhhhhhhhhccccccceeehhhhhhhhhc
Confidence 3468999998 46788899999999999999996322211 11 112355678999999999
Q ss_pred CEEEEeCCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHH
Q 018506 103 DVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ 146 (355)
Q Consensus 103 DiVi~~v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~ 146 (355)
|+||++++.+ ..+++... + .++++|+|+-+..+.
T Consensus 92 D~ivi~t~h~-~f~~l~~~----~-----~~~~~I~D~~~~~~~ 125 (136)
T d1mv8a3 92 DVLVLGNGDE-LFVDLVNK----T-----PSGKKLVDLVGFMPH 125 (136)
T ss_dssp SEEEECSCCG-GGHHHHHS----C-----CTTCEEEESSSCCSS
T ss_pred eEEEEEeCCH-HHHHHHHH----h-----cCCCEEEECCCCCCh
Confidence 9999999875 44454322 1 245689999877653
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=96.36 E-value=0.006 Score=47.29 Aligned_cols=68 Identities=6% Similarity=-0.014 Sum_probs=48.8
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHH----HHHhCCCCCC----CCHH---HH-hhcCCEEEEeCCCch
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMK----MFSDMGVPTK----ETPF---EV-AEASDVVITMLPSSS 113 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~----~l~~~g~~~~----~s~~---e~-~~~aDiVi~~v~~~~ 113 (355)
-.|-|+|.|.+|..++..|.+.|++|++.+.++++.. .+...++.+. +++. ++ ++++|.||++.+++.
T Consensus 4 nHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~d~ 83 (153)
T d1id1a_ 4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDNDA 83 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCHH
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEccccHH
Confidence 3589999999999999999999999999999887543 3333443221 1221 11 357898998888754
|
| >d1i36a1 a.100.1.8 (A:153-264) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Conserved hypothetical protein MTH1747 domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=96.34 E-value=0.0046 Score=45.25 Aligned_cols=101 Identities=14% Similarity=0.131 Sum_probs=69.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCC--cchh
Q 018506 221 GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG--FASK 298 (355)
Q Consensus 221 g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 298 (355)
|.+.++||+...+..++.+++.|++..+++.|+..+. ++.+..+....|..... .+-++ -...
T Consensus 1 G~ASalKM~rS~~~KG~~AL~~e~~~aA~~~Gv~~~l-~~~l~~s~~~~~~~~~~--------------~~v~~~~~ha~ 65 (112)
T d1i36a1 1 GDASAIKMLRSSYTKGVSALLWETLTAAHRLGLEEDV-LEMLEYTEGNDFRESAI--------------SRLKSSCIHAR 65 (112)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH-HHHHHTTSCSSTHHHHH--------------HHHHHHHHTHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHcCCccHHHHHH--------------HHhcCCcchhh
Confidence 6789999999999999999999999999999996654 44444433222210000 00011 1124
Q ss_pred hHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCC
Q 018506 299 LMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHD 337 (355)
Q Consensus 299 ~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g~g 337 (355)
....+++.+.++.++ ++++.+.+++.+++++..+.+.+
T Consensus 66 Rr~~EM~Eia~tl~~-~l~P~m~~a~a~~~~~~~d~~~~ 103 (112)
T d1i36a1 66 RRYEEMKEVQDMLAE-VIDPVMPTCIIRIFDKLKDVKVS 103 (112)
T ss_dssp HHHHHHHHHHHHHHT-TSCCSHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHHHH-hCCchHHHHHHHHHHHHHhcCCC
Confidence 556788889999988 48888999999999988876543
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=96.33 E-value=0.0014 Score=44.88 Aligned_cols=35 Identities=14% Similarity=0.209 Sum_probs=32.0
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
+++|||||.|-.|..|+..-.+-|++|.++|.+++
T Consensus 1 ~k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~ 35 (78)
T d3etja2 1 MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE 35 (78)
T ss_dssp CEEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence 47899999999999999999999999999997644
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.32 E-value=0.0017 Score=51.46 Aligned_cols=67 Identities=18% Similarity=0.133 Sum_probs=49.4
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCC---CH---H-HHhhcCCEEEEeCCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKE---TP---F-EVAEASDVVITMLPS 111 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~---s~---~-e~~~~aDiVi~~v~~ 111 (355)
-.+|.|+|+|.+|...++.+...|.+|+++++++++.+..++.|+..+- +. . ......|+++.++..
T Consensus 28 g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~ 101 (168)
T d1piwa2 28 GKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASS 101 (168)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSC
T ss_pred CCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecC
Confidence 3679999999999999988888899999999999999988887754221 11 1 112345777776554
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.31 E-value=0.004 Score=52.97 Aligned_cols=41 Identities=15% Similarity=0.324 Sum_probs=35.9
Q ss_pred ceEEEE--cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 46 ESVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 46 mkIgiI--G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
-|+.+| |.+.+|.++|+.|++.|++|++++|++++++++.+
T Consensus 10 ~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~ 52 (257)
T d1xg5a_ 10 DRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAA 52 (257)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 367777 78899999999999999999999999998877653
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.31 E-value=0.0085 Score=47.70 Aligned_cols=74 Identities=16% Similarity=0.216 Sum_probs=54.9
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHhCCCCCCC------C-HHHHh-----hcCCEEEEeCCCc
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVPTKE------T-PFEVA-----EASDVVITMLPSS 112 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~~~------s-~~e~~-----~~aDiVi~~v~~~ 112 (355)
-+|.|+|+|.+|...++.+...|. +|++.|+++++.+...+.|+..+- + ..+.. ...|++|.++..+
T Consensus 31 ~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi~~~g~~ 110 (176)
T d1d1ta2 31 STCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEVIGHL 110 (176)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCEEEECSCCH
T ss_pred CEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccceEEEEeCCch
Confidence 469999999999999999999995 799999999999988887765321 1 11111 3478888887766
Q ss_pred hHHHHHh
Q 018506 113 SHVLDVY 119 (355)
Q Consensus 113 ~~~~~vl 119 (355)
...+..+
T Consensus 111 ~~~~~a~ 117 (176)
T d1d1ta2 111 ETMIDAL 117 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554443
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.31 E-value=0.0018 Score=52.19 Aligned_cols=34 Identities=21% Similarity=0.430 Sum_probs=31.3
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChh
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCN 79 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~ 79 (355)
.||+|||.|..|...|..|+++|+ +|+++++++.
T Consensus 5 ~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~ 39 (196)
T d1gtea4 5 AKIALLGAGPASISCASFLARLGYSDITIFEKQEY 39 (196)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred CEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence 689999999999999999999998 5999998754
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=96.31 E-value=0.0049 Score=52.38 Aligned_cols=68 Identities=22% Similarity=0.287 Sum_probs=46.4
Q ss_pred eEEEE--cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEe--CCCchHHHHHhcC
Q 018506 47 SVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITM--LPSSSHVLDVYNG 121 (355)
Q Consensus 47 kIgiI--G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~--v~~~~~~~~vl~~ 121 (355)
|++|| |.+.+|.++|+.|++.|++|.+.+|++++++...+. ..+...+..++.+. +.++++++.++..
T Consensus 5 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~-------~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~ 76 (258)
T d1iy8a_ 5 RVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAA-------VLETAPDAEVLTTVADVSDEAQVEAYVTA 76 (258)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHHCTTCCEEEEECCTTSHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhhCCCCeEEEEeccCCCHHHHHHHHHH
Confidence 56777 667899999999999999999999999987765431 11112234444443 3455666665554
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=96.28 E-value=0.0038 Score=49.82 Aligned_cols=65 Identities=15% Similarity=0.205 Sum_probs=46.9
Q ss_pred CceEEEEcc-cHHhHHHHHHHHHCCC-------cEEEEeCChh--HHHHH----HhC------CCCCCCCHHHHhhcCCE
Q 018506 45 FESVGFIGL-GNMGFRMASNLMKAGY-------KMAVHDVNCN--VMKMF----SDM------GVPTKETPFEVAEASDV 104 (355)
Q Consensus 45 ~mkIgiIG~-G~mG~~ia~~L~~~G~-------~V~v~dr~~~--~~~~l----~~~------g~~~~~s~~e~~~~aDi 104 (355)
..||.|+|+ |.+|..++-.|+.... ++.++|.... .++.+ .+. .....++..++++++|+
T Consensus 24 ~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~aDv 103 (175)
T d7mdha1 24 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDW 103 (175)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred CcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchhhccCCce
Confidence 358999996 9999999999987532 4667777553 22222 221 23456788999999999
Q ss_pred EEEeC
Q 018506 105 VITML 109 (355)
Q Consensus 105 Vi~~v 109 (355)
||++-
T Consensus 104 Vvi~a 108 (175)
T d7mdha1 104 ALLIG 108 (175)
T ss_dssp EEECC
T ss_pred EEEee
Confidence 99996
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.27 E-value=0.0083 Score=50.45 Aligned_cols=65 Identities=8% Similarity=-0.032 Sum_probs=46.8
Q ss_pred eEEEE--cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 47 SVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 47 kIgiI--G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
|+.+| |.+.+|.++|+.|++.|++|.+.+|++++++++.+... ....+.+=+.+.++++.++...
T Consensus 8 K~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~~-----------~~~~~~~Dv~d~~~v~~~~~~~ 74 (244)
T d1pr9a_ 8 RRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECP-----------GIEPVCVDLGDWEATERALGSV 74 (244)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHST-----------TCEEEECCTTCHHHHHHHHTTC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcC-----------CCeEEEEeCCCHHHHHHHHHHh
Confidence 55566 77789999999999999999999999999887765321 1222223355666777776553
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=96.26 E-value=0.0019 Score=50.04 Aligned_cols=92 Identities=20% Similarity=0.206 Sum_probs=51.7
Q ss_pred ceEEEE-cccHHhHHHHHHHHHC-CCc---EEEEeCC--hhHHHHHHhCC-CCCCCCHHHHhhcCCEEEEeCCCchHHHH
Q 018506 46 ESVGFI-GLGNMGFRMASNLMKA-GYK---MAVHDVN--CNVMKMFSDMG-VPTKETPFEVAEASDVVITMLPSSSHVLD 117 (355)
Q Consensus 46 mkIgiI-G~G~mG~~ia~~L~~~-G~~---V~v~dr~--~~~~~~l~~~g-~~~~~s~~e~~~~aDiVi~~v~~~~~~~~ 117 (355)
|||||| +.|..|.-+.+.|.+. .|+ +..+..+ ..+...+...- ........+..+++|+||+|+|.. ..++
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~~~~~~~~~~~~~~~~~~~DvvF~alp~~-~s~~ 79 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIESLKQLDAVITCQGGS-YTEK 79 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSSCCCBCEETTCHHHHTTCSEEEECSCHH-HHHH
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccCCcceeeecccchhhhccccEEEEecCch-HHHH
Confidence 899999 5799999999988764 343 4433322 11111111110 111112335568999999999975 3344
Q ss_pred HhcCCCccccCCCCCCCeEEEEcCCCC
Q 018506 118 VYNGPNGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 118 vl~~~~~~l~~~~~~~~~ivi~~st~~ 144 (355)
+... +.+.. ...+|||.|+..
T Consensus 80 ~~~~---l~~~g---~~~~VIDlSsdf 100 (147)
T d1mb4a1 80 VYPA---LRQAG---WKGYWIDAASTL 100 (147)
T ss_dssp HHHH---HHHTT---CCSEEEESSSTT
T ss_pred HhHH---HHHcC---CceEEEeCCccc
Confidence 3332 23211 224799998865
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.26 E-value=0.0037 Score=52.79 Aligned_cols=66 Identities=12% Similarity=0.084 Sum_probs=46.1
Q ss_pred eEEEE--cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEe--CCCchHHHHHhcC
Q 018506 47 SVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITM--LPSSSHVLDVYNG 121 (355)
Q Consensus 47 kIgiI--G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~--v~~~~~~~~vl~~ 121 (355)
|+.+| |.+.+|..+|..|+++|.+|++++|++++++++.+. ..+. ..++..+. +.+++.++.+++.
T Consensus 8 kv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~-------~~~~--~~~~~~~~~Dvs~~~~v~~~~~~ 77 (244)
T d1yb1a_ 8 EIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAK-------CKGL--GAKVHTFVVDCSNREDIYSSAKK 77 (244)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHT--TCCEEEEECCTTCHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhc--CCcEEEEEeeCCCHHHHHHHHHH
Confidence 57777 556699999999999999999999999998877642 1111 23333333 5566666666554
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=96.25 E-value=0.0045 Score=53.22 Aligned_cols=68 Identities=22% Similarity=0.279 Sum_probs=48.6
Q ss_pred CCceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhH--------HHHHHhCCCCC-------CCCHHHHhhcCCEEEE
Q 018506 44 QFESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNV--------MKMFSDMGVPT-------KETPFEVAEASDVVIT 107 (355)
Q Consensus 44 ~~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~--------~~~l~~~g~~~-------~~s~~e~~~~aDiVi~ 107 (355)
+++||.|+| .|.+|+.++..|.++||+|++..|++.. ...+...++.. ..+..++...++.++.
T Consensus 2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~~ 81 (312)
T d1qyda_ 2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVIS 81 (312)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcchhhh
Confidence 468899998 5999999999999999999999986532 22233344321 1233456678899998
Q ss_pred eCCC
Q 018506 108 MLPS 111 (355)
Q Consensus 108 ~v~~ 111 (355)
+.+.
T Consensus 82 ~~~~ 85 (312)
T d1qyda_ 82 ALAG 85 (312)
T ss_dssp CCCC
T ss_pred hhhh
Confidence 8653
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.25 E-value=0.001 Score=50.53 Aligned_cols=71 Identities=18% Similarity=0.297 Sum_probs=57.0
Q ss_pred ceEEEEcc----cHHhHHHHHHHHHCC-CcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhc
Q 018506 46 ESVGFIGL----GNMGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYN 120 (355)
Q Consensus 46 mkIgiIG~----G~mG~~ia~~L~~~G-~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~ 120 (355)
.+|+|||+ |.+|..+.++|.+.| ++|+.+|...+.+ .|.....|+.|+-...|++++++|. +.+.++++
T Consensus 9 ksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i-----~G~~~y~sl~dlp~~vDlvvi~vp~-~~~~~~~~ 82 (129)
T d2csua1 9 KGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEV-----QGVKAYKSVKDIPDEIDLAIIVVPK-RFVKDTLI 82 (129)
T ss_dssp SEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEE-----TTEECBSSTTSCSSCCSEEEECSCH-HHHHHHHH
T ss_pred CeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCcccc-----CCeEeecchhhcCCCCceEEEecCh-HHhHHHHH
Confidence 67999997 899999999998766 6888888764332 4677888998888889999999986 57777776
Q ss_pred CC
Q 018506 121 GP 122 (355)
Q Consensus 121 ~~ 122 (355)
+.
T Consensus 83 ~~ 84 (129)
T d2csua1 83 QC 84 (129)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=96.23 E-value=0.0069 Score=48.17 Aligned_cols=76 Identities=14% Similarity=0.175 Sum_probs=56.1
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHhCCCCCCCC-------HHHHh-----hcCCEEEEeCCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVPTKET-------PFEVA-----EASDVVITMLPS 111 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~~~s-------~~e~~-----~~aDiVi~~v~~ 111 (355)
-.+|.|+|+|.+|...+..+...|. .|++.|+++++.+..++.|+..+-+ ..+.. ...|++|-|+..
T Consensus 29 G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~~G~ 108 (174)
T d1e3ia2 29 GSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAGT 108 (174)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSCC
T ss_pred CCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEeccc
Confidence 3579999999999999999999997 5888899999998888887643221 11111 246888888877
Q ss_pred chHHHHHhc
Q 018506 112 SSHVLDVYN 120 (355)
Q Consensus 112 ~~~~~~vl~ 120 (355)
+..++..+.
T Consensus 109 ~~~~~~a~~ 117 (174)
T d1e3ia2 109 AQTLKAAVD 117 (174)
T ss_dssp HHHHHHHHH
T ss_pred chHHHHHHH
Confidence 656555443
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=96.23 E-value=0.0021 Score=55.79 Aligned_cols=35 Identities=26% Similarity=0.307 Sum_probs=32.0
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCCh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 78 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~ 78 (355)
...||.|||+|..|...|..|+++|++|+++++++
T Consensus 29 ~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~ 63 (370)
T d2iida1 29 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE 63 (370)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 44689999999999999999999999999999864
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=96.22 E-value=0.002 Score=56.66 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=31.8
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCCh
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 78 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~ 78 (355)
.+||.|||+|.-|...|..|+++|++|++++++.
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~ 35 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRD 35 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCC
Confidence 5789999999999999999999999999999864
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=96.17 E-value=0.0026 Score=54.01 Aligned_cols=41 Identities=15% Similarity=0.121 Sum_probs=35.9
Q ss_pred ceEEEE--cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 46 ESVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 46 mkIgiI--G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
-||++| |.+.+|.++|+.|++.|++|.+++|++++++++.+
T Consensus 10 nKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~ 52 (251)
T d2c07a1 10 NKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVD 52 (251)
T ss_dssp SCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHH
Confidence 578888 66789999999999999999999999988876653
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=96.13 E-value=0.0028 Score=50.80 Aligned_cols=92 Identities=14% Similarity=0.138 Sum_probs=55.5
Q ss_pred CceEEEEc-ccHHhHHHHHHHHHC-CCcEE-EEeCCh-----hHHHHHHh--CCC-----CCCCCHHHHhhcCCEEEEeC
Q 018506 45 FESVGFIG-LGNMGFRMASNLMKA-GYKMA-VHDVNC-----NVMKMFSD--MGV-----PTKETPFEVAEASDVVITML 109 (355)
Q Consensus 45 ~mkIgiIG-~G~mG~~ia~~L~~~-G~~V~-v~dr~~-----~~~~~l~~--~g~-----~~~~s~~e~~~~aDiVi~~v 109 (355)
||||+||| .|..|.-+.+.|.++ .+++. ++.++. ++...... .+. ....+..+...+.|++|+|+
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~al 80 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDVVFLAT 80 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCEEEECS
T ss_pred CcEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhhhcccceeeccc
Confidence 78999998 899999999999986 44554 333221 12222111 111 11233444456899999999
Q ss_pred CCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCH
Q 018506 110 PSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDP 145 (355)
Q Consensus 110 ~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~ 145 (355)
|..... ..... ..+ .+..+||.|.-.-
T Consensus 81 p~~~s~-~~~~~---~~~-----~~~~vIDlSadfR 107 (179)
T d2g17a1 81 AHEVSH-DLAPQ---FLQ-----AGCVVFDLSGAFR 107 (179)
T ss_dssp CHHHHH-HHHHH---HHH-----TTCEEEECSSTTS
T ss_pred cchhHH-HHhhh---hhh-----cCceeeccccccc
Confidence 975333 22221 222 4568999998763
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=96.12 E-value=0.0043 Score=52.74 Aligned_cols=41 Identities=12% Similarity=0.191 Sum_probs=33.8
Q ss_pred ceEEEE-cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 46 ESVGFI-GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 46 mkIgiI-G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
+++-|. |.+.+|.++|..|++.|++|.+.+|++++++++.+
T Consensus 7 K~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~ 48 (258)
T d1ae1a_ 7 TTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLE 48 (258)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 334444 58889999999999999999999999988776543
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=96.08 E-value=0.0062 Score=51.23 Aligned_cols=41 Identities=20% Similarity=0.245 Sum_probs=35.9
Q ss_pred ceEEEE--cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 46 ESVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 46 mkIgiI--G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
-|+++| |.+.+|.++|+.|++.|++|.+.+|++++++++.+
T Consensus 4 gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~ 46 (243)
T d1q7ba_ 4 GKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISD 46 (243)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 367777 67889999999999999999999999998887654
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=96.08 E-value=0.0083 Score=50.68 Aligned_cols=41 Identities=20% Similarity=0.358 Sum_probs=36.0
Q ss_pred ceEEEE--cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 46 ESVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 46 mkIgiI--G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
-|+++| |.+.+|.++|+.|++.|++|.+.+|++++++.+.+
T Consensus 6 gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~ 48 (251)
T d1zk4a1 6 GKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAK 48 (251)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 467777 68889999999999999999999999998877654
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.06 E-value=0.0053 Score=51.76 Aligned_cols=41 Identities=20% Similarity=0.276 Sum_probs=35.5
Q ss_pred ceEEEE--cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 46 ESVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 46 mkIgiI--G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
-|+++| |.+.+|.++|+.|++.|++|.+.+|++++++.+.+
T Consensus 6 gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~ 48 (244)
T d1nffa_ 6 GKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAA 48 (244)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 367777 66789999999999999999999999998887764
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=96.00 E-value=0.0048 Score=52.36 Aligned_cols=40 Identities=23% Similarity=0.356 Sum_probs=35.5
Q ss_pred eEEEE--cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 47 SVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 47 kIgiI--G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
|+++| |.+.+|.++|+.|++.|++|++.+|++++++++.+
T Consensus 12 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~ 53 (255)
T d1fmca_ 12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVD 53 (255)
T ss_dssp CEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 78888 77889999999999999999999999988776553
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.00 E-value=0.014 Score=48.98 Aligned_cols=65 Identities=11% Similarity=0.029 Sum_probs=45.6
Q ss_pred eEEEE--cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 47 SVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 47 kIgiI--G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
|+++| |.+.+|.++|+.|++.|++|.+.+|++++++++.+... ....+.+=+.++++++.+++..
T Consensus 6 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~-----------~~~~~~~Dv~~~~~v~~~~~~~ 72 (242)
T d1cyda_ 6 LRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECP-----------GIEPVCVDLGDWDATEKALGGI 72 (242)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHST-----------TCEEEECCTTCHHHHHHHHTTC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcC-----------CCeEEEEeCCCHHHHHHHHHHc
Confidence 45555 45689999999999999999999999998887765321 1222222245666777776653
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.99 E-value=0.00051 Score=57.37 Aligned_cols=27 Identities=22% Similarity=0.212 Sum_probs=24.9
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEE
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMA 72 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~ 72 (355)
|||.|||+|.+|...|..|+++|++|+
T Consensus 1 mkV~VIGaGi~GlstA~~L~~~G~~v~ 27 (246)
T d1kifa1 1 MRVVVIGAGVIGLSTALCIHERYHSVL 27 (246)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHTTTS
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCce
Confidence 899999999999999999999998643
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.98 E-value=0.0038 Score=46.16 Aligned_cols=34 Identities=21% Similarity=0.349 Sum_probs=31.7
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
.+|.|||.|.+|.-+|..|.+.|.+|+++.|.+.
T Consensus 23 ~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~ 56 (117)
T d1ebda2 23 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGE 56 (117)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CeEEEECCCccceeeeeeecccccEEEEEEecce
Confidence 5799999999999999999999999999988754
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=95.98 E-value=0.0074 Score=50.69 Aligned_cols=40 Identities=13% Similarity=0.206 Sum_probs=35.0
Q ss_pred eEEEE--cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 47 SVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 47 kIgiI--G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
|+.+| |.+.+|.++|+.|++.|++|.+.+|++++++++.+
T Consensus 6 K~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~ 47 (242)
T d1ulsa_ 6 KAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAE 47 (242)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 56666 56789999999999999999999999998887765
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.92 E-value=0.0032 Score=52.26 Aligned_cols=33 Identities=24% Similarity=0.353 Sum_probs=30.3
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCCh
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNC 78 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~ 78 (355)
+||.|||+|.-|...|..|+++|+ +|+++++++
T Consensus 1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~ 34 (347)
T d1b5qa1 1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATD 34 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence 579999999999999999999995 799999864
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=95.92 E-value=0.0031 Score=53.54 Aligned_cols=31 Identities=26% Similarity=0.269 Sum_probs=29.6
Q ss_pred EEEEcccHHhHHHHHHHHHCCCcEEEEeCCh
Q 018506 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 78 (355)
Q Consensus 48 IgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~ 78 (355)
|.|||.|.+|.+.|..|+++|++|++++++.
T Consensus 7 vvIIGaGi~Gls~A~~La~~G~~V~vlE~~~ 37 (276)
T d1ryia1 7 AVVIGGGIIGSAIAYYLAKENKNTALFESGT 37 (276)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred EEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 9999999999999999999999999999864
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.91 E-value=0.0053 Score=51.92 Aligned_cols=42 Identities=12% Similarity=0.221 Sum_probs=36.2
Q ss_pred ceEEEE--cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC
Q 018506 46 ESVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM 87 (355)
Q Consensus 46 mkIgiI--G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~ 87 (355)
-|+.+| |.+.+|.++|+.|++.|++|.+.+|++++++.+.+.
T Consensus 6 GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~ 49 (250)
T d1ydea1 6 GKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQE 49 (250)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHh
Confidence 356666 668999999999999999999999999998887653
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=95.90 E-value=0.0097 Score=50.25 Aligned_cols=68 Identities=18% Similarity=0.231 Sum_probs=45.6
Q ss_pred ceEEEE--cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEe--CCCchHHHHHhcC
Q 018506 46 ESVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITM--LPSSSHVLDVYNG 121 (355)
Q Consensus 46 mkIgiI--G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~--v~~~~~~~~vl~~ 121 (355)
-|+++| |.+.+|.++|+.|++.|++|.+.+|++++.++..+. +.+.. ..+++.+. +.++++++.++..
T Consensus 5 gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~-------l~~~~-g~~~~~~~~Dv~~~~~v~~~~~~ 76 (251)
T d1vl8a_ 5 GRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQK-------LTEKY-GVETMAFRCDVSNYEEVKKLLEA 76 (251)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHHH-CCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHHHh-CCcEEEEEccCCCHHHHHHHHHH
Confidence 356666 667899999999999999999999999887665431 11111 23443333 4555666666554
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=95.89 E-value=0.005 Score=52.39 Aligned_cols=41 Identities=24% Similarity=0.371 Sum_probs=34.5
Q ss_pred ceEEEE--cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 46 ESVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 46 mkIgiI--G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
-|+++| |.+.+|.++|+.|++.|++|++.+|++++++++.+
T Consensus 5 gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~ 47 (260)
T d1zema1 5 GKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEA 47 (260)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 356666 56779999999999999999999999988876653
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.88 E-value=0.0034 Score=53.12 Aligned_cols=34 Identities=24% Similarity=0.276 Sum_probs=31.4
Q ss_pred ceEEEEcccHHhHHHHHHHHHCC-CcEEEEeCChh
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCN 79 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G-~~V~v~dr~~~ 79 (355)
++|.|||+|.-|..+|..|.++| ++|++++++++
T Consensus 2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~ 36 (288)
T d3c96a1 2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSE 36 (288)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 78999999999999999999999 58999998764
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.87 E-value=0.0043 Score=53.58 Aligned_cols=35 Identities=23% Similarity=0.290 Sum_probs=32.2
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCC
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVN 77 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~ 77 (355)
.+..||.|||+|.-|..-|..|+++|++|+++..+
T Consensus 3 ~~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~ 37 (449)
T d2dw4a2 3 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEAR 37 (449)
T ss_dssp SCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCC
Confidence 45678999999999999999999999999999875
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=95.87 E-value=0.0045 Score=45.72 Aligned_cols=34 Identities=21% Similarity=0.355 Sum_probs=31.6
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
.||.|||.|..|.-+|..|.+.|++|++++|.+.
T Consensus 22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~ 55 (116)
T d1gesa2 22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDA 55 (116)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CEEEEECCChhhHHHHHHhhccccEEEEEeecch
Confidence 5799999999999999999999999999998753
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.84 E-value=0.0047 Score=46.11 Aligned_cols=34 Identities=26% Similarity=0.410 Sum_probs=31.6
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
.++.|||.|.+|.-+|..|.+.|.+|+++++++.
T Consensus 24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~ 57 (122)
T d1v59a2 24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQ 57 (122)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CeEEEECCCchHHHHHHHHHhhCcceeEEEeccc
Confidence 5899999999999999999999999999988653
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=95.84 E-value=0.0063 Score=51.73 Aligned_cols=41 Identities=12% Similarity=0.221 Sum_probs=34.9
Q ss_pred ceEEEE--cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 46 ESVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 46 mkIgiI--G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
-|+++| |.+.+|.++|+.|++.|++|.+.+|++++++++.+
T Consensus 8 GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~ 50 (259)
T d2ae2a_ 8 GCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLT 50 (259)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 466777 66789999999999999999999999998876653
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=95.81 E-value=0.0024 Score=48.85 Aligned_cols=72 Identities=14% Similarity=0.281 Sum_probs=57.2
Q ss_pred ceEEEEcc----cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcC
Q 018506 46 ESVGFIGL----GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 121 (355)
Q Consensus 46 mkIgiIG~----G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~ 121 (355)
.+|+|||+ +..|..+.++|.+.||++..++.++.. +.+ .|.....++.|+-...|++++++|. +.+.+++++
T Consensus 14 ksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~-~~i--~g~~~~~~l~~i~~~iD~v~v~~p~-~~v~~~v~~ 89 (136)
T d1iuka_ 14 KTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQG-EEL--FGEEAVASLLDLKEPVDILDVFRPP-SALMDHLPE 89 (136)
T ss_dssp CEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTT-SEE--TTEECBSSGGGCCSCCSEEEECSCH-HHHTTTHHH
T ss_pred CeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEecccc-cee--eceecccchhhccCCCceEEEeccH-HHHHHHHHH
Confidence 56999997 789999999999999999999876432 111 4667778888888889999999985 466666654
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.81 E-value=0.0034 Score=52.03 Aligned_cols=34 Identities=21% Similarity=0.347 Sum_probs=30.6
Q ss_pred ceEEEEcccHHhHHHHHHHHHC--CCcEEEEeCChh
Q 018506 46 ESVGFIGLGNMGFRMASNLMKA--GYKMAVHDVNCN 79 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~--G~~V~v~dr~~~ 79 (355)
+||+|||+|.-|..-|..|.++ ||+|++|++.+.
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~ 37 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV 37 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 6999999999999999999875 789999998764
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=95.80 E-value=0.0035 Score=53.31 Aligned_cols=33 Identities=27% Similarity=0.408 Sum_probs=31.1
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCCh
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 78 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~ 78 (355)
+||.|||+|.-|..-|..|+++|++|+++++++
T Consensus 2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~ 34 (373)
T d1seza1 2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG 34 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 689999999999999999999999999999864
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=95.80 E-value=0.0071 Score=53.40 Aligned_cols=68 Identities=12% Similarity=0.101 Sum_probs=49.1
Q ss_pred CCceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHH--HHHh-CCCC-----CCCC---HHHHhhcCCEEEEeCCC
Q 018506 44 QFESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMK--MFSD-MGVP-----TKET---PFEVAEASDVVITMLPS 111 (355)
Q Consensus 44 ~~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~--~l~~-~g~~-----~~~s---~~e~~~~aDiVi~~v~~ 111 (355)
++++|.|+| .|.+|+.+++.|.++||+|.+..|++++.. .+.. .++. ..+. ...+...+|.++...+.
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~~~~~~ 81 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTS 81 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCS
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhcCCceEEeeccc
Confidence 467899997 699999999999999999999999876543 3333 2322 2222 34466788988887653
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=95.76 E-value=0.0059 Score=54.17 Aligned_cols=44 Identities=14% Similarity=0.053 Sum_probs=35.1
Q ss_pred ccCCCCCCCCCceEEEE-cccHHhHHHHHHHHHCCCcEEEEeCCh
Q 018506 35 FFSSQVPSCQFESVGFI-GLGNMGFRMASNLMKAGYKMAVHDVNC 78 (355)
Q Consensus 35 ~~~~~~~~~~~mkIgiI-G~G~mG~~ia~~L~~~G~~V~v~dr~~ 78 (355)
+.+-|+=..+-|||.|. |.|-+|+.++..|.++||+|+++|+..
T Consensus 5 ~~~~~~~~~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~ 49 (363)
T d2c5aa1 5 LEREQYWPSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKK 49 (363)
T ss_dssp CCCCCSCTTSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred ccccCcCCCCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCC
Confidence 33444333456999999 599999999999999999999998643
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=95.75 E-value=0.012 Score=44.16 Aligned_cols=65 Identities=22% Similarity=0.175 Sum_probs=49.6
Q ss_pred EEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCC----CCHHHH----hhcCCEEEEeCCCchH
Q 018506 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK----ETPFEV----AEASDVVITMLPSSSH 114 (355)
Q Consensus 48 IgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~----~s~~e~----~~~aDiVi~~v~~~~~ 114 (355)
|-|+|.|.+|..+++.| .|++|.+.+.++++.+.+...|+.+. ++.+-+ +.+++.++++.+++..
T Consensus 3 ivI~G~g~~g~~l~~~L--~~~~i~vi~~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~~ 75 (129)
T d2fy8a1 3 VVICGWSESTLECLREL--RGSEVFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLESDSE 75 (129)
T ss_dssp EEEESCCHHHHHHHHTS--CGGGEEEEESCTTHHHHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCSSHHH
T ss_pred EEEECCCHHHHHHHHHH--cCCCCEEEEcchHHHHHHHhcCccccccccCCHHHHHHhhhhcCcEEEEeccchhh
Confidence 67899999999999999 46789999999999998888765331 222222 3578999998887643
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.74 E-value=0.0035 Score=53.74 Aligned_cols=35 Identities=26% Similarity=0.349 Sum_probs=32.2
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhH
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNV 80 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~ 80 (355)
.+|.|||+|..|..+|..|+++|++|++++++++.
T Consensus 3 ~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~ 37 (292)
T d1k0ia1 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPD 37 (292)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHH
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 36999999999999999999999999999998643
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=95.74 E-value=0.0057 Score=45.57 Aligned_cols=34 Identities=18% Similarity=0.346 Sum_probs=31.9
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
.+|.|||.|.+|.-+|..|.+.|.+|+++++++.
T Consensus 31 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ 64 (121)
T d1d7ya2 31 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPR 64 (121)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CeEEEECcchhHHHHHHHhhcccceEEEEeeccc
Confidence 6899999999999999999999999999998764
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.73 E-value=0.0076 Score=50.98 Aligned_cols=86 Identities=15% Similarity=0.232 Sum_probs=53.5
Q ss_pred eEEEE--cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEe--CCCchHHHHHhcCC
Q 018506 47 SVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITM--LPSSSHVLDVYNGP 122 (355)
Q Consensus 47 kIgiI--G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~--v~~~~~~~~vl~~~ 122 (355)
|+.+| |.+.+|.++|+.|++.|++|.+.+|++++.++..+.- .+......+..+. +.+++++++++...
T Consensus 4 KvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l-------~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 76 (254)
T d2gdza1 4 KVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAAL-------HEQFEPQKTLFIQCDVADQQQLRDTFRKV 76 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-------TTTSCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-------HHhcCCCcEEEEEeecCCHHHHHHHHHHH
Confidence 67777 6688999999999999999999999999877665410 0001122333332 45666677666543
Q ss_pred CccccCCCCCCCeEEEEcCCCC
Q 018506 123 NGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~ 144 (355)
...+-. . .++|+.....
T Consensus 77 ~~~~G~---i--DilVnnAg~~ 93 (254)
T d2gdza1 77 VDHFGR---L--DILVNNAGVN 93 (254)
T ss_dssp HHHHSC---C--CEEEECCCCC
T ss_pred HHHcCC---c--Ceeccccccc
Confidence 222211 1 2667665544
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=95.65 E-value=0.0058 Score=45.25 Aligned_cols=33 Identities=12% Similarity=0.345 Sum_probs=31.1
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCCh
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 78 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~ 78 (355)
.||.|||.|.+|.-+|..|++.|.+|++++|.+
T Consensus 23 ~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~ 55 (117)
T d1onfa2 23 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGN 55 (117)
T ss_dssp SEEEEECCSHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred CEEEEECCchHHHHHHHHHHhccccceeeehhc
Confidence 689999999999999999999999999999864
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=95.64 E-value=0.0046 Score=54.40 Aligned_cols=36 Identities=17% Similarity=0.333 Sum_probs=31.2
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCC--CcEEEEeCChh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAG--YKMAVHDVNCN 79 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G--~~V~v~dr~~~ 79 (355)
.++||+|||+|.-|.+.|..|++.| ++|++++|+.+
T Consensus 3 ~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~ 40 (335)
T d2gv8a1 3 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS 40 (335)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred CCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence 3467999999999999999998876 69999999753
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=95.59 E-value=0.0064 Score=45.28 Aligned_cols=34 Identities=29% Similarity=0.456 Sum_probs=31.6
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
.+|.|||.|.+|.-+|..|++.|++|++++|++.
T Consensus 33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~ 66 (122)
T d1xhca2 33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAM 66 (122)
T ss_dssp SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred CcEEEECCcHHHHHHHHHhhcccceEEEEecccc
Confidence 5799999999999999999999999999998754
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=95.58 E-value=0.0086 Score=47.33 Aligned_cols=45 Identities=20% Similarity=0.301 Sum_probs=38.1
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHhCCCC
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVP 90 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~ 90 (355)
.+|.|+|+|.+|...+..+...|. .|++.++++++.+.+++.|..
T Consensus 34 ~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~ 79 (172)
T d1h2ba2 34 AYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGAD 79 (172)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCS
T ss_pred CEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccc
Confidence 569999999999999998887775 678889999999988887653
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.57 E-value=0.0068 Score=45.21 Aligned_cols=32 Identities=16% Similarity=0.154 Sum_probs=30.1
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCC
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVN 77 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~ 77 (355)
.++.|||.|.+|.-+|..|.+.|.+|+++.|+
T Consensus 21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~ 52 (122)
T d1h6va2 21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS 52 (122)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence 47999999999999999999999999999875
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.55 E-value=0.0096 Score=50.41 Aligned_cols=40 Identities=18% Similarity=0.361 Sum_probs=35.2
Q ss_pred eEEEE--cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 47 SVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 47 kIgiI--G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
|+.+| |.+.+|.++|+.|++.|++|.+.+|+.++++.+.+
T Consensus 6 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~ 47 (256)
T d1k2wa_ 6 KTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAA 47 (256)
T ss_dssp EEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 66777 67899999999999999999999999998877654
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=95.52 E-value=0.013 Score=49.64 Aligned_cols=40 Identities=20% Similarity=0.197 Sum_probs=34.3
Q ss_pred eEEEE--cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 47 SVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 47 kIgiI--G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
|+.+| |.+.+|.++|+.|++.|++|.+.+|++++++++.+
T Consensus 6 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~ 47 (254)
T d1hdca_ 6 KTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAR 47 (254)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 45555 56689999999999999999999999998877665
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=95.51 E-value=0.0054 Score=52.28 Aligned_cols=68 Identities=21% Similarity=0.258 Sum_probs=47.5
Q ss_pred CCceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhH------H---HHHHhCCCCC-------CCCHHHHhhcCCEEE
Q 018506 44 QFESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNV------M---KMFSDMGVPT-------KETPFEVAEASDVVI 106 (355)
Q Consensus 44 ~~mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~------~---~~l~~~g~~~-------~~s~~e~~~~aDiVi 106 (355)
+++||.|+|+ |.+|+.++..|.++||+|++.+|++.. . ..+...++.. ..+..+..+.++.++
T Consensus 2 ~kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~vi 81 (307)
T d1qyca_ 2 SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVI 81 (307)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhhhhceeee
Confidence 5689999975 999999999999999999999987543 1 1222223221 122344567888888
Q ss_pred EeCCC
Q 018506 107 TMLPS 111 (355)
Q Consensus 107 ~~v~~ 111 (355)
.+...
T Consensus 82 ~~~~~ 86 (307)
T d1qyca_ 82 STVGS 86 (307)
T ss_dssp ECCCG
T ss_pred ecccc
Confidence 77643
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=95.51 E-value=0.012 Score=50.58 Aligned_cols=39 Identities=26% Similarity=0.361 Sum_probs=35.2
Q ss_pred eEEEE--cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH
Q 018506 47 SVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 85 (355)
Q Consensus 47 kIgiI--G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~ 85 (355)
|+++| |.|.+|.++|+.|++.|++|++.+|+.++.++..
T Consensus 26 K~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~ 66 (294)
T d1w6ua_ 26 KVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATA 66 (294)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHH
Confidence 78888 7999999999999999999999999998876654
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=95.49 E-value=0.019 Score=45.34 Aligned_cols=74 Identities=16% Similarity=0.250 Sum_probs=53.5
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHhCCCCCCCC-------HHHHh-----hcCCEEEEeCCCc
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVPTKET-------PFEVA-----EASDVVITMLPSS 112 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~~~s-------~~e~~-----~~aDiVi~~v~~~ 112 (355)
.+|.|+|+|.+|...+..+...|. .|++.++++++.+...+.|+..+-+ ..+.. ...|++|.++..+
T Consensus 30 dtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~vid~~G~~ 109 (176)
T d2jhfa2 30 STCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRL 109 (176)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCH
T ss_pred CEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCCCCEEEecCCch
Confidence 569999999999999999999985 7888999999999888877543211 11211 2367777777665
Q ss_pred hHHHHHh
Q 018506 113 SHVLDVY 119 (355)
Q Consensus 113 ~~~~~vl 119 (355)
...++.+
T Consensus 110 ~~~~~a~ 116 (176)
T d2jhfa2 110 DTMVTAL 116 (176)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 4444433
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=95.46 E-value=0.0099 Score=44.28 Aligned_cols=35 Identities=34% Similarity=0.456 Sum_probs=31.9
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
..+|.|||.|.+|.-+|..|++.|++|+++++.+.
T Consensus 30 ~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~ 64 (123)
T d1nhpa2 30 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDR 64 (123)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCEEEEECChHHHHHHHHHhhccceEEEEEEecCc
Confidence 36899999999999999999999999999988653
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.46 E-value=0.0077 Score=54.98 Aligned_cols=34 Identities=29% Similarity=0.504 Sum_probs=30.3
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCCh
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNC 78 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~ 78 (355)
..||.|||+|.+|+.++++|+..|. +++++|.+.
T Consensus 37 ~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~ 71 (426)
T d1yovb1 37 TCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT 71 (426)
T ss_dssp HCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCB
T ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence 3689999999999999999999997 699998653
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.46 E-value=0.018 Score=45.18 Aligned_cols=72 Identities=15% Similarity=0.165 Sum_probs=51.1
Q ss_pred ceEEEEcc-cHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHhCCCCCC-----CCHHHHh------hcCCEEEEeCCCc
Q 018506 46 ESVGFIGL-GNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVPTK-----ETPFEVA------EASDVVITMLPSS 112 (355)
Q Consensus 46 mkIgiIG~-G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~~-----~s~~e~~------~~aDiVi~~v~~~ 112 (355)
-+|.|+|+ |.+|...+..+...|. +|+++++++++.+.+++.|+... .+..+.. ...|+||-|+..+
T Consensus 29 ~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d~vid~~g~~ 108 (170)
T d1jvba2 29 KTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNNSE 108 (170)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESCCCH
T ss_pred CEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccchhhhcccccc
Confidence 57999995 9999999999888884 89999999999998887665321 1222221 2367777777655
Q ss_pred hHHHH
Q 018506 113 SHVLD 117 (355)
Q Consensus 113 ~~~~~ 117 (355)
..++.
T Consensus 109 ~~~~~ 113 (170)
T d1jvba2 109 KTLSV 113 (170)
T ss_dssp HHHTT
T ss_pred hHHHh
Confidence 44443
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=95.43 E-value=0.0063 Score=52.47 Aligned_cols=33 Identities=27% Similarity=0.485 Sum_probs=30.1
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCCh
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNC 78 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~ 78 (355)
.+|.|||+|.+|.+.|..|++.|+ +|+++++++
T Consensus 2 ~dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~ 35 (305)
T d1pj5a2 2 PRIVIIGAGIVGTNLADELVTRGWNNITVLDQGP 35 (305)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 579999999999999999999995 799999863
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.41 E-value=0.0084 Score=44.82 Aligned_cols=33 Identities=21% Similarity=0.197 Sum_probs=31.1
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCCh
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 78 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~ 78 (355)
.+|.|||.|.+|.-+|..|.+.|.+|+++.|++
T Consensus 23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~ 55 (125)
T d3grsa2 23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHD 55 (125)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CEEEEEcCCccHHHHHHHHhcCCcEEEEEeecc
Confidence 579999999999999999999999999999864
|
| >d1n1ea1 a.100.1.6 (A:198-357) Glycerol-3-phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Glycerol-3-phosphate dehydrogenase domain: Glycerol-3-phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=95.37 E-value=0.0013 Score=51.87 Aligned_cols=124 Identities=21% Similarity=0.158 Sum_probs=76.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCC--CcccccCCCCCCCcc--cCCCCCCCCCCCcc
Q 018506 221 GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSA--RCWSSDSYNPVPGVM--EGVPASRNYGGGFA 296 (355)
Q Consensus 221 g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~--~s~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 296 (355)
|-...+++..|...+.+..++.|+..++++.|.+.++++.+..-++. ++.....++...+.. +|...+.-......
T Consensus 21 Gi~~gl~~g~N~~aali~~g~~Em~~~~~~~g~~~~t~~~laGlGDli~Tc~s~~sRN~~~G~~l~~g~~~~e~~~~~~~ 100 (160)
T d1n1ea1 21 GVANGLGMGLNARAALIMRGLLEIRDLTAALGGDGSAVFGLAGLGDLQLTCSSELSRNFTVGKKLGKGLPIEEIQRTSKA 100 (160)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSTTTTSTTTHHHHHHHTTCTTSHHHHHHHHHHHTCCHHHHHHSCCS
T ss_pred HHHHHcCCChhHHHHHHHHHHHHHHHHHHHhCCCccceeccccchhheeeeecchhHHHHHHHHHhccccHHHHHHhccc
Confidence 33444456678888899999999999999999988887765444431 111111222111110 11100000000011
Q ss_pred hhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHHHHHHHhcC
Q 018506 297 SKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGG 351 (355)
Q Consensus 297 ~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~~ 351 (355)
+.....-+..+.+.++++++++|+++++++++. ++.|...+++.+..+
T Consensus 101 ~vEG~~t~~~v~~l~~~~~i~~Pi~~~vy~Il~-------~~~~p~~~i~~Lm~r 148 (160)
T d1n1ea1 101 VAEGVATADPLMRLAKQLKVKMPLCHQIYEIVY-------KKKNPRDALADLLSC 148 (160)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHH-------SCCCHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHh-------CcCCHHHHHHHHHCC
Confidence 234555667889999999999999999999984 667777777766543
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.36 E-value=0.0083 Score=50.46 Aligned_cols=41 Identities=17% Similarity=0.253 Sum_probs=36.9
Q ss_pred ceEEEE--cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 46 ESVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 46 mkIgiI--G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
-|+++| |.+.+|.++|+.|++.|++|++.+|++++++++.+
T Consensus 6 gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~~~ 48 (245)
T d2ag5a1 6 GKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEK 48 (245)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGGG
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh
Confidence 467888 89999999999999999999999999998887765
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.31 E-value=0.0057 Score=53.08 Aligned_cols=34 Identities=24% Similarity=0.202 Sum_probs=31.3
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCCh
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 78 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~ 78 (355)
|..|.|||+|..|...|..|+++|++|+++++++
T Consensus 1 M~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~ 34 (298)
T d1i8ta1 1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRN 34 (298)
T ss_dssp CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSS
T ss_pred CccEEEECCcHHHHHHHHHHHhCCCcEEEEECCC
Confidence 4579999999999999999999999999999864
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=95.29 E-value=0.01 Score=43.91 Aligned_cols=33 Identities=24% Similarity=0.437 Sum_probs=30.8
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCCh
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 78 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~ 78 (355)
.+|.|||.|.+|.-+|..|++.|.+|+++.+..
T Consensus 23 ~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~ 55 (119)
T d3lada2 23 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMD 55 (119)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CeEEEECCChHHHHHHHHHHHcCCceEEEEeec
Confidence 679999999999999999999999999998764
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.27 E-value=0.01 Score=50.64 Aligned_cols=70 Identities=6% Similarity=0.007 Sum_probs=48.1
Q ss_pred ceEEEE--cccHHhHHHHHHHHHC-CCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 46 ESVGFI--GLGNMGFRMASNLMKA-GYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 46 mkIgiI--G~G~mG~~ia~~L~~~-G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
++|++| |.+.+|.++|+.|++. |+.|++++|++++.++..+. +.+.-.++.++.+=+.+.+++++++...
T Consensus 3 ~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~-------l~~~~~~~~~~~~Dvs~~~sv~~~~~~~ 75 (275)
T d1wmaa1 3 IHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQ-------LQAEGLSPRFHQLDIDDLQSIRALRDFL 75 (275)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHH-------HHHTTCCCEEEECCTTCHHHHHHHHHHH
T ss_pred CeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHH-------HHhcCCcEEEEEEecCCHHHHHHHHHHH
Confidence 789999 8899999999999985 89999999999988765431 1111112333333356666666655543
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.25 E-value=0.0098 Score=49.90 Aligned_cols=41 Identities=20% Similarity=0.245 Sum_probs=35.6
Q ss_pred ceEEEE--cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 46 ESVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 46 mkIgiI--G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
-|+++| |.+.+|.++|+.|++.|++|++.+|+.++.+...+
T Consensus 5 GKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~ 47 (248)
T d2o23a1 5 GLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAK 47 (248)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH
Confidence 478888 77889999999999999999999999888776543
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=95.18 E-value=0.011 Score=44.75 Aligned_cols=34 Identities=24% Similarity=0.421 Sum_probs=31.7
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
.+|.|||.|.+|.-+|..|.+.|++|+++++.+.
T Consensus 36 k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~ 69 (133)
T d1q1ra2 36 NRLVVIGGGYIGLEVAATAIKANMHVTLLDTAAR 69 (133)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CEEEEECCchHHHHHHHHHHhhCcceeeeeeccc
Confidence 6899999999999999999999999999998654
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=95.17 E-value=0.013 Score=49.72 Aligned_cols=41 Identities=17% Similarity=0.251 Sum_probs=36.3
Q ss_pred ceEEEE--cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 46 ESVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 46 mkIgiI--G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
-|+++| |.+.+|.++|+.|++.|++|.+.+|++++++++.+
T Consensus 5 gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~ 47 (264)
T d1spxa_ 5 EKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQ 47 (264)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 478888 78999999999999999999999999988876653
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.08 E-value=0.036 Score=43.45 Aligned_cols=74 Identities=16% Similarity=0.207 Sum_probs=51.9
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHhCCCCCC-------CCHHHHh-----hcCCEEEEeCCCc
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVPTK-------ETPFEVA-----EASDVVITMLPSS 112 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~~-------~s~~e~~-----~~aDiVi~~v~~~ 112 (355)
.+|.|+|+|.+|...++.+...|. .|++.++++++.+..++.|+..+ ++..+.. ...|+||-++..+
T Consensus 30 ~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~D~vid~~G~~ 109 (176)
T d2fzwa2 30 SVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIGNV 109 (176)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCH
T ss_pred CEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCCcEeeecCCCH
Confidence 579999999999999999999986 57778899999888887775432 1122222 2367777777655
Q ss_pred hHHHHHh
Q 018506 113 SHVLDVY 119 (355)
Q Consensus 113 ~~~~~vl 119 (355)
...+..+
T Consensus 110 ~~~~~~~ 116 (176)
T d2fzwa2 110 KVMRAAL 116 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.07 E-value=0.017 Score=45.65 Aligned_cols=90 Identities=20% Similarity=0.179 Sum_probs=59.0
Q ss_pred CCCceEEEEcccH-HhHHHHHHHHHCCCcEEEEeCChhHHHHHHh-CCCCC------------CCCHHHHhhcCCEEEEe
Q 018506 43 CQFESVGFIGLGN-MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-MGVPT------------KETPFEVAEASDVVITM 108 (355)
Q Consensus 43 ~~~mkIgiIG~G~-mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~-~g~~~------------~~s~~e~~~~aDiVi~~ 108 (355)
..-+++.|||-++ +|.+||..|++.|-.|+.++.+.... +.. ..... .+.+.+....+|+||.+
T Consensus 27 l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~aDIvIsa 104 (171)
T d1edza1 27 LYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQK--FTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITG 104 (171)
T ss_dssp TTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEE--EESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEEC
T ss_pred CCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccccccc--cccccceeeeeeccccccccchhHHhhccccCCEEEEc
Confidence 3457899999775 59999999999999999988642210 100 00110 12256667789999999
Q ss_pred CCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCC
Q 018506 109 LPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 109 v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~ 144 (355)
++.+.. .+. .++++ +|.++||.+...
T Consensus 105 vG~p~~---~i~--~d~ik-----~GavvIDvGi~~ 130 (171)
T d1edza1 105 VPSENY---KFP--TEYIK-----EGAVCINFACTK 130 (171)
T ss_dssp CCCTTC---CBC--TTTSC-----TTEEEEECSSSC
T ss_pred cCCCcc---ccC--hhhcc-----cCceEeeccccc
Confidence 987621 011 12433 578999998653
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=95.05 E-value=0.016 Score=48.08 Aligned_cols=37 Identities=30% Similarity=0.410 Sum_probs=33.4
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
....+|.|||.|.-|...|..|++.|++|++++++++
T Consensus 47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~ 83 (233)
T d1djqa3 47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEK 83 (233)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred cCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccc
Confidence 3457899999999999999999999999999998754
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=95.02 E-value=0.018 Score=48.97 Aligned_cols=38 Identities=24% Similarity=0.295 Sum_probs=31.2
Q ss_pred eEEEE--cccHHhHHHHHHHHHCCCcEEEEeCC-hhHHHHH
Q 018506 47 SVGFI--GLGNMGFRMASNLMKAGYKMAVHDVN-CNVMKMF 84 (355)
Q Consensus 47 kIgiI--G~G~mG~~ia~~L~~~G~~V~v~dr~-~~~~~~l 84 (355)
|+.+| |.+.+|.++++.|++.|++|++.+|+ .+.++.+
T Consensus 19 K~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~ 59 (272)
T d1g0oa_ 19 KVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEV 59 (272)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHH
Confidence 67777 68999999999999999999998876 4444444
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.01 E-value=0.01 Score=43.57 Aligned_cols=34 Identities=18% Similarity=0.335 Sum_probs=31.4
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
.++.|||.|..|.-+|..|++.|++|+++++.+.
T Consensus 22 ~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~ 55 (115)
T d1lvla2 22 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARER 55 (115)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CeEEEECCCHHHHHHHHHHhhcccceEEEeeecc
Confidence 5799999999999999999999999999988654
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=94.95 E-value=0.017 Score=49.30 Aligned_cols=41 Identities=10% Similarity=0.132 Sum_probs=35.4
Q ss_pred ceEEEE--cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 46 ESVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 46 mkIgiI--G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
-|+.+| |.+.+|.++|+.|++.|++|.+.+|++++++++.+
T Consensus 5 gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~ 47 (272)
T d1xkqa_ 5 NKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQ 47 (272)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 467777 77889999999999999999999999988876654
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=94.93 E-value=0.019 Score=50.20 Aligned_cols=31 Identities=23% Similarity=0.323 Sum_probs=29.2
Q ss_pred ceEEEE-cccHHhHHHHHHHHHCCCcEEEEeC
Q 018506 46 ESVGFI-GLGNMGFRMASNLMKAGYKMAVHDV 76 (355)
Q Consensus 46 mkIgiI-G~G~mG~~ia~~L~~~G~~V~v~dr 76 (355)
|||-|+ |.|.+|+.++..|.+.||+|+++||
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~ 32 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDN 32 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence 889999 7899999999999999999999976
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=94.88 E-value=0.011 Score=49.55 Aligned_cols=34 Identities=21% Similarity=0.134 Sum_probs=30.2
Q ss_pred ceEEEE--cccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 46 ESVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 46 mkIgiI--G~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
|||.+| |.+.+|.++|+.|++.|++|++.||+.+
T Consensus 1 mkVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~ 36 (257)
T d1fjha_ 1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDA 36 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChH
Confidence 788888 5788999999999999999999998754
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=94.87 E-value=0.022 Score=49.83 Aligned_cols=65 Identities=15% Similarity=0.195 Sum_probs=45.8
Q ss_pred ceEEEE-cccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHhC-C-----CCCCC--CHHH-HhhcCCEEEEeCC
Q 018506 46 ESVGFI-GLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-G-----VPTKE--TPFE-VAEASDVVITMLP 110 (355)
Q Consensus 46 mkIgiI-G~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~~-g-----~~~~~--s~~e-~~~~aDiVi~~v~ 110 (355)
|||-|. |+|.+|+.+++.|.+.|| +|++.|+.......+.+. + ..... +..+ +.+++|+||-+.-
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~a~ 76 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVA 76 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhccCCCeEEEECccCChHHHHHHHHhCCCccccccc
Confidence 799999 679999999999999995 799998876655544331 1 11222 2233 5678999998753
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=94.84 E-value=0.018 Score=49.16 Aligned_cols=40 Identities=20% Similarity=0.341 Sum_probs=34.8
Q ss_pred eEEEE--cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 47 SVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 47 kIgiI--G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
|+.+| |.+.+|.++|+.|++.|++|.+.+|++++++++.+
T Consensus 6 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~ 47 (276)
T d1bdba_ 6 EAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELET 47 (276)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 56666 67899999999999999999999999998877654
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=94.83 E-value=0.0078 Score=50.98 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=30.7
Q ss_pred ceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCCh
Q 018506 46 ESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNC 78 (355)
Q Consensus 46 mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~ 78 (355)
|||-|.|+ |.+|+.++..|.++||+|+..+|+.
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~ 35 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD 35 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence 89999986 9999999999999999999999864
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=94.78 E-value=0.035 Score=48.56 Aligned_cols=65 Identities=14% Similarity=0.099 Sum_probs=48.2
Q ss_pred CceEEEE-cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC---------------CCCCCCCHHHHhhcCCEEEEe
Q 018506 45 FESVGFI-GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM---------------GVPTKETPFEVAEASDVVITM 108 (355)
Q Consensus 45 ~mkIgiI-G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~---------------g~~~~~s~~e~~~~aDiVi~~ 108 (355)
-.+|.|. |.|.+|+.++..|.++||+|.+..|+.++...+... .+.-..+..+++.++|.|+-+
T Consensus 11 gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~v~~~ 90 (342)
T d1y1pa1 11 GSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVAHI 90 (342)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEEEC
T ss_pred cCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchhhhhh
Confidence 3679999 679999999999999999999999988776654321 111223445677888988866
Q ss_pred C
Q 018506 109 L 109 (355)
Q Consensus 109 v 109 (355)
.
T Consensus 91 a 91 (342)
T d1y1pa1 91 A 91 (342)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=94.78 E-value=0.019 Score=48.35 Aligned_cols=41 Identities=22% Similarity=0.402 Sum_probs=35.5
Q ss_pred ceEEEE--cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 46 ESVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 46 mkIgiI--G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
-|+++| |.+.+|.++|+.|++.|++|.+.+|++++++++.+
T Consensus 6 gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~ 48 (253)
T d1hxha_ 6 GKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAA 48 (253)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 367777 67789999999999999999999999998877654
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=94.75 E-value=0.02 Score=48.62 Aligned_cols=41 Identities=22% Similarity=0.385 Sum_probs=35.6
Q ss_pred ceEEEE--cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 46 ESVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 46 mkIgiI--G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
-|+++| |.+.+|.++|+.|++.|++|++.+|++++++++.+
T Consensus 6 gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~ 48 (268)
T d2bgka1 6 DKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCN 48 (268)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 467777 67889999999999999999999999998877654
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=94.73 E-value=0.0053 Score=47.85 Aligned_cols=90 Identities=16% Similarity=0.132 Sum_probs=52.3
Q ss_pred eEEEEcc-cHHhHHHHHHHHHCCCc---EEEEeCChhHHHHHHhC--CCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhc
Q 018506 47 SVGFIGL-GNMGFRMASNLMKAGYK---MAVHDVNCNVMKMFSDM--GVPTKETPFEVAEASDVVITMLPSSSHVLDVYN 120 (355)
Q Consensus 47 kIgiIG~-G~mG~~ia~~L~~~G~~---V~v~dr~~~~~~~l~~~--g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~ 120 (355)
||||||+ |..|.-+.+.|.++.++ +..+..+...-+.+... ........++...+.|++++++|.....+.+.
T Consensus 3 kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~d~~f~~~~~~~s~~~~~- 81 (154)
T d2gz1a1 3 TVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAFEGVDIALFSAGSSTSAKYAP- 81 (154)
T ss_dssp EEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEEETTEEEEEEECCTTTTTTCSEEEECSCHHHHHHHHH-
T ss_pred EEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccccccCCcccccccchhhhhhhhhhhhccCccchhhHHh-
Confidence 7999987 99999999999887653 33333221111111111 11112233344568999999998654333322
Q ss_pred CCCccccCCCCCCCeEEEEcCCCCH
Q 018506 121 GPNGLLQGGNSVRPQLLIDSSTIDP 145 (355)
Q Consensus 121 ~~~~~l~~~~~~~~~ivi~~st~~~ 145 (355)
. ... .+..|||.|+...
T Consensus 82 ~---~~~-----~~~~VIDlSsdfR 98 (154)
T d2gz1a1 82 Y---AVK-----AGVVVVDNTSYFR 98 (154)
T ss_dssp H---HHH-----TTCEEEECSSTTT
T ss_pred h---hcc-----ccceehhcChhhh
Confidence 1 222 4568999988653
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.71 E-value=0.013 Score=47.84 Aligned_cols=32 Identities=22% Similarity=0.139 Sum_probs=30.1
Q ss_pred eEEEEcccHHhHHHHHHHHHCCCcEEEEeCCh
Q 018506 47 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 78 (355)
Q Consensus 47 kIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~ 78 (355)
-|.|||+|.-|...|..|+++|++|+++++++
T Consensus 7 DviViGaG~~Gl~~A~~La~~G~~V~vlE~~~ 38 (297)
T d2bcgg1 7 DVIVLGTGITECILSGLLSVDGKKVLHIDKQD 38 (297)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 38999999999999999999999999999874
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=94.64 E-value=0.014 Score=50.66 Aligned_cols=36 Identities=19% Similarity=0.198 Sum_probs=32.8
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
....|.|||+|.-|.++|..|.++|++|++++++++
T Consensus 6 ~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~ 41 (298)
T d1w4xa1 6 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGD 41 (298)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence 346799999999999999999999999999998765
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=94.63 E-value=0.022 Score=48.53 Aligned_cols=41 Identities=15% Similarity=0.148 Sum_probs=34.9
Q ss_pred ceEEEE--cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 46 ESVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 46 mkIgiI--G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
-|+++| |.+.+|.++|+.|++.|++|.+.+|++++++++.+
T Consensus 4 gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~ 46 (274)
T d1xhla_ 4 GKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQ 46 (274)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 356777 77789999999999999999999999988776543
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=94.63 E-value=0.02 Score=47.81 Aligned_cols=40 Identities=13% Similarity=0.145 Sum_probs=33.7
Q ss_pred eEEEE--cccHHhHHHHHHHHHCCCc-------EEEEeCChhHHHHHHh
Q 018506 47 SVGFI--GLGNMGFRMASNLMKAGYK-------MAVHDVNCNVMKMFSD 86 (355)
Q Consensus 47 kIgiI--G~G~mG~~ia~~L~~~G~~-------V~v~dr~~~~~~~l~~ 86 (355)
+|.+| |.+.+|.++|+.|+++|++ |.+++|++++++++.+
T Consensus 2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~ 50 (240)
T d2bd0a1 2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISL 50 (240)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHH
T ss_pred CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHH
Confidence 56666 5577999999999999987 8999999998877653
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.60 E-value=0.12 Score=38.85 Aligned_cols=85 Identities=16% Similarity=0.182 Sum_probs=51.2
Q ss_pred eEEEEc-ccHHhHHHHHHHHHC-CCcEE-EEeCChhHHHHHHhCCCCCCCCHHHH-hhcCCEEEEeCCCchHHHHHhcCC
Q 018506 47 SVGFIG-LGNMGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSDMGVPTKETPFEV-AEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 47 kIgiIG-~G~mG~~ia~~L~~~-G~~V~-v~dr~~~~~~~l~~~g~~~~~s~~e~-~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
||+|+| .|+||..++..+.+. ++++. .+|+.. ++... ..++|+||=... |+.+.+.+..
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~---------------~~~~~~~~~~DvvIDFS~-p~~~~~~~~~- 63 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGD---------------PLSLLTDGNTEVVIDFTH-PDVVMGNLEF- 63 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTC---------------CTHHHHTTTCSEEEECCC-TTTHHHHHHH-
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC---------------chhhhccccCCEEEEccc-HHHHHHHHHH-
Confidence 799999 599999999987764 46644 456531 11222 246898886653 3456555542
Q ss_pred CccccCCCCCCCeEEEEcCCCC-HHHHHHHHHHH
Q 018506 123 NGLLQGGNSVRPQLLIDSSTID-PQTSRNISAAV 155 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~-~~~~~~l~~~~ 155 (355)
.++ .+.-+|..||+. ++..+.+.+.+
T Consensus 64 --~~~-----~~~~~ViGTTG~~~~~~~~l~~~~ 90 (135)
T d1yl7a1 64 --LID-----NGIHAVVGTTGFTAERFQQVESWL 90 (135)
T ss_dssp --HHH-----TTCEEEECCCCCCHHHHHHHHHHH
T ss_pred --HHh-----cCCCEEEeccccchhHHHHHHHHH
Confidence 222 233455566655 56666666654
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=94.59 E-value=0.024 Score=47.97 Aligned_cols=41 Identities=10% Similarity=0.116 Sum_probs=35.4
Q ss_pred ceEEEE--cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 46 ESVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 46 mkIgiI--G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
-|+.+| |.+.+|.++|+.|++.|++|.+++|++++++++.+
T Consensus 8 gK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~ 50 (259)
T d1xq1a_ 8 AKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLS 50 (259)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 467777 77789999999999999999999999988876653
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=94.58 E-value=0.012 Score=43.70 Aligned_cols=34 Identities=24% Similarity=0.408 Sum_probs=31.7
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
.++.|||.|.+|.-+|..|.+.|.+|++..|++.
T Consensus 26 ~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~ 59 (123)
T d1dxla2 26 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASE 59 (123)
T ss_dssp SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CeEEEEccchHHHHHHHHHHhcCCeEEEEEEccc
Confidence 5799999999999999999999999999988764
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.48 E-value=0.025 Score=48.89 Aligned_cols=41 Identities=17% Similarity=0.343 Sum_probs=34.9
Q ss_pred ceEEEE--cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 46 ESVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 46 mkIgiI--G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
-|+++| |.+.+|.++|+.|++.|++|++.+|++++++...+
T Consensus 12 gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~ 54 (297)
T d1yxma1 12 GQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAAD 54 (297)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 467777 67789999999999999999999999988766543
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=94.48 E-value=0.029 Score=47.04 Aligned_cols=39 Identities=15% Similarity=0.206 Sum_probs=32.7
Q ss_pred ceEEEE--cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHH
Q 018506 46 ESVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMF 84 (355)
Q Consensus 46 mkIgiI--G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l 84 (355)
-|+.+| |.+.+|.++|+.|++.|++|.+.+|+++..+..
T Consensus 5 GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~ 45 (248)
T d2d1ya1 5 GKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVA 45 (248)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 356666 688999999999999999999999998765443
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=94.48 E-value=0.028 Score=46.96 Aligned_cols=40 Identities=8% Similarity=0.091 Sum_probs=33.9
Q ss_pred eEEEE--cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 47 SVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 47 kIgiI--G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
|+++| |.+.+|.++|+.|++.|++|++.+|+.+++++..+
T Consensus 6 K~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~ 47 (241)
T d2a4ka1 6 KTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVA 47 (241)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 45555 56669999999999999999999999998877655
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=94.46 E-value=0.022 Score=41.94 Aligned_cols=34 Identities=9% Similarity=0.047 Sum_probs=31.7
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
.+|.|||.|.+|.-+|..|++.|.+|+++.|.+.
T Consensus 23 ~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~ 56 (121)
T d1mo9a2 23 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEP 56 (121)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred CEEEEECCCHHHHHHHHHHHhcchhheEeeccch
Confidence 6899999999999999999999999999998754
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=94.43 E-value=0.058 Score=42.22 Aligned_cols=47 Identities=19% Similarity=0.299 Sum_probs=40.5
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHhCCCCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVPT 91 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~ 91 (355)
-.+|.|+|+|.+|...+..+...|- .|++.++++++.+..++.|+..
T Consensus 29 g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~ 76 (175)
T d1cdoa2 29 GSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATD 76 (175)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCE
T ss_pred CCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcE
Confidence 3579999999999999999988876 5888999999999988887643
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.42 E-value=0.0099 Score=49.02 Aligned_cols=34 Identities=21% Similarity=0.289 Sum_probs=30.8
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCC-------cEEEEeCChh
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGY-------KMAVHDVNCN 79 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~-------~V~v~dr~~~ 79 (355)
.||+|||+|.-|.+-|..|+++|| +|++|++.+.
T Consensus 3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~ 43 (239)
T d1lqta2 3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT 43 (239)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCC
Confidence 589999999999999999999985 7999998764
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=94.38 E-value=0.026 Score=47.17 Aligned_cols=42 Identities=21% Similarity=0.356 Sum_probs=34.0
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHh
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~ 86 (355)
..||.|||+|.+|+.++..|+..|. +++++|.+.=....+.+
T Consensus 30 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~Ve~sNL~R 72 (247)
T d1jw9b_ 30 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQR 72 (247)
T ss_dssp HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGT
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcccchhhhhh
Confidence 3689999999999999999999997 68999876544444443
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=94.32 E-value=0.032 Score=47.20 Aligned_cols=39 Identities=18% Similarity=0.095 Sum_probs=31.9
Q ss_pred ceEEEE--cccHHhHHHHHHHHHCCCcEEEEeCChh-HHHHH
Q 018506 46 ESVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCN-VMKMF 84 (355)
Q Consensus 46 mkIgiI--G~G~mG~~ia~~L~~~G~~V~v~dr~~~-~~~~l 84 (355)
-|+.|| |.+.+|.++|+.|++.|++|.+.+|+.+ .++.+
T Consensus 7 gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~ 48 (261)
T d1geea_ 7 GKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSV 48 (261)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHH
Confidence 467777 6789999999999999999999999754 44433
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=94.26 E-value=0.018 Score=48.70 Aligned_cols=31 Identities=32% Similarity=0.439 Sum_probs=29.2
Q ss_pred eEEEEcccHHhHHHHHHHHHCCCcEEEEeCC
Q 018506 47 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVN 77 (355)
Q Consensus 47 kIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~ 77 (355)
-|.|||.|.+|...|..|+++|++|+++++.
T Consensus 5 DvvIIGaGi~Gls~A~~La~~G~~V~viE~~ 35 (281)
T d2gf3a1 5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAF 35 (281)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 3899999999999999999999999999975
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=94.24 E-value=0.018 Score=46.22 Aligned_cols=33 Identities=12% Similarity=0.152 Sum_probs=29.2
Q ss_pred ceEEEEcccHHhHHHHHHHHHCC--CcEEEEeCCh
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAG--YKMAVHDVNC 78 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G--~~V~v~dr~~ 78 (355)
|||.|||.|..|..+|..|.+.+ .+|++++|++
T Consensus 1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~ 35 (198)
T d1nhpa1 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD 35 (198)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 89999999999999999998864 5799998764
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.14 E-value=0.033 Score=47.17 Aligned_cols=40 Identities=18% Similarity=0.202 Sum_probs=34.3
Q ss_pred eEEEE--cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 47 SVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 47 kIgiI--G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
|+.+| |.+.+|.++|+.|++.|++|++.+|+.++++++.+
T Consensus 15 K~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~ 56 (269)
T d1xu9a_ 15 KKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVS 56 (269)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 56666 56679999999999999999999999999887653
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=94.08 E-value=0.094 Score=43.62 Aligned_cols=92 Identities=18% Similarity=0.250 Sum_probs=56.5
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEe-CC----------hhHHHH------------HHh-CCCCCCCCHHHH
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHD-VN----------CNVMKM------------FSD-MGVPTKETPFEV 98 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~d-r~----------~~~~~~------------l~~-~g~~~~~s~~e~ 98 (355)
.+-.+|.|-|.|++|..+|+.|.+.|..|+.++ .+ .+.+.+ +.. .+.....+.+++
T Consensus 29 l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~~g~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 108 (242)
T d1v9la1 29 IEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPDAI 108 (242)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSSTTGG
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEeecccccccccccccHHHHHHHhhcchhhHHHhhhhccCceEeeCcchh
Confidence 355789999999999999999999999987553 32 122221 111 234444445554
Q ss_pred h-hcCCEEEEeCCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCC
Q 018506 99 A-EASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 99 ~-~~aDiVi~~v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~ 144 (355)
. .+|||++-|-.... +... .+. ..+-++|+...+.+
T Consensus 109 ~~~~~DIliPcA~~~~-----I~~~--~a~---~i~ak~IvegAN~p 145 (242)
T d1v9la1 109 FKLDVDIFVPAAIENV-----IRGD--NAG---LVKARLVVEGANGP 145 (242)
T ss_dssp GGCCCSEEEECSCSSC-----BCTT--TTT---TCCCSEEECCSSSC
T ss_pred ccccccEEeecchhcc-----ccHH--HHH---hcccCEEEecCCCC
Confidence 4 47999998865431 2111 111 12445788777765
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=94.06 E-value=0.045 Score=45.69 Aligned_cols=40 Identities=25% Similarity=0.269 Sum_probs=32.5
Q ss_pred eEEEE--cccHHhHHHHHHHHHCCCcEEEE-eCChhHHHHHHh
Q 018506 47 SVGFI--GLGNMGFRMASNLMKAGYKMAVH-DVNCNVMKMFSD 86 (355)
Q Consensus 47 kIgiI--G~G~mG~~ia~~L~~~G~~V~v~-dr~~~~~~~l~~ 86 (355)
+|.+| |.+.+|.++|+.|++.|++|.+. .|+++..+++.+
T Consensus 2 pV~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~ 44 (244)
T d1edoa_ 2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSK 44 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHH
Confidence 37777 78899999999999999999875 567777766543
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=94.02 E-value=0.08 Score=42.03 Aligned_cols=74 Identities=14% Similarity=0.121 Sum_probs=45.5
Q ss_pred CCCCceEEEEc-ccHHhHHHHHHHHHCC-CcEEEE-eCC-hh-HHHHHHh----CCC-CCCCCHHHHhhcCCEEEEeCCC
Q 018506 42 SCQFESVGFIG-LGNMGFRMASNLMKAG-YKMAVH-DVN-CN-VMKMFSD----MGV-PTKETPFEVAEASDVVITMLPS 111 (355)
Q Consensus 42 ~~~~mkIgiIG-~G~mG~~ia~~L~~~G-~~V~v~-dr~-~~-~~~~l~~----~g~-~~~~s~~e~~~~aDiVi~~v~~ 111 (355)
+++++|||||| .|..|.-+.+.|.++- +++... .++ .. ++..... ... .......+...++|++|+|+|.
T Consensus 2 s~~kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~alp~ 81 (183)
T d2cvoa1 2 SGEEVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADFSNVDAVFCCLPH 81 (183)
T ss_dssp CSSCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCGGGCSEEEECCSS
T ss_pred CCCccEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccccccccccccccchhhhhhhhcccceeeecccc
Confidence 45778999995 6999999999999753 355444 222 11 1222111 111 1222334456789999999998
Q ss_pred chHH
Q 018506 112 SSHV 115 (355)
Q Consensus 112 ~~~~ 115 (355)
....
T Consensus 82 ~~s~ 85 (183)
T d2cvoa1 82 GTTQ 85 (183)
T ss_dssp SHHH
T ss_pred chHH
Confidence 7443
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=93.99 E-value=0.024 Score=42.26 Aligned_cols=34 Identities=21% Similarity=0.309 Sum_probs=31.5
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
.++.|||.|.+|.-+|..|.+.|.+|+++.+.+.
T Consensus 27 ~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~ 60 (125)
T d1ojta2 27 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDG 60 (125)
T ss_dssp SEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecc
Confidence 5799999999999999999999999999988653
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=93.99 E-value=0.027 Score=47.57 Aligned_cols=68 Identities=10% Similarity=0.053 Sum_probs=45.6
Q ss_pred ceEEEE--cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEe--CCCchHHHHHhcC
Q 018506 46 ESVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITM--LPSSSHVLDVYNG 121 (355)
Q Consensus 46 mkIgiI--G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~--v~~~~~~~~vl~~ 121 (355)
-|+.+| |.+.+|.++|+.|++.|++|++.+|+.++.++..+. ..+.. ..++..+. +.++++++.++..
T Consensus 9 gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~-------~~~~~-g~~~~~~~~Dv~~~~~v~~~~~~ 80 (260)
T d1h5qa_ 9 NKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEK-------VGKEF-GVKTKAYQCDVSNTDIVTKTIQQ 80 (260)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHH-------HHHHH-TCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHHHh-CCceEEEEccCCCHHHHHHHHHH
Confidence 467777 667799999999999999999999998877655431 11111 23343333 4555666666554
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.95 E-value=0.023 Score=49.15 Aligned_cols=31 Identities=26% Similarity=0.314 Sum_probs=29.2
Q ss_pred EEEEcccHHhHHHHHHHHHCCCcEEEEeCCh
Q 018506 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 78 (355)
Q Consensus 48 IgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~ 78 (355)
|.|||+|.-|..-|..|+++|++|++++++.
T Consensus 2 ViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~ 32 (383)
T d2v5za1 2 VVVVGGGISGMAAAKLLHDSGLNVVVLEARD 32 (383)
T ss_dssp EEEECCBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred EEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 7899999999999999999999999998754
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=93.94 E-value=0.15 Score=40.74 Aligned_cols=45 Identities=22% Similarity=0.245 Sum_probs=37.8
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHhCCCC
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVP 90 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~ 90 (355)
.+|.|+|+|.+|...+..+...|. .|++.|+++++++..++.|+.
T Consensus 27 ~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~ 72 (195)
T d1kola2 27 STVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFE 72 (195)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCE
T ss_pred CEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhcccc
Confidence 579999999999888887777776 688889999999988887653
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=93.92 E-value=0.044 Score=45.80 Aligned_cols=35 Identities=20% Similarity=0.353 Sum_probs=29.9
Q ss_pred ceEEEE--cccHHhHHHHHHHHHCCCcEEEEeCChhH
Q 018506 46 ESVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNV 80 (355)
Q Consensus 46 mkIgiI--G~G~mG~~ia~~L~~~G~~V~v~dr~~~~ 80 (355)
-|+++| |.+.+|.++|+.|++.|++|.+.+|+++.
T Consensus 5 gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~ 41 (247)
T d2ew8a1 5 DKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAP 41 (247)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchH
Confidence 367777 66789999999999999999999997653
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=93.80 E-value=0.038 Score=45.78 Aligned_cols=38 Identities=16% Similarity=0.181 Sum_probs=31.6
Q ss_pred eEEEE--cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHH
Q 018506 47 SVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMF 84 (355)
Q Consensus 47 kIgiI--G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l 84 (355)
|+.+| |.+.+|.++++.|++.|++|.+.+|+++.+++.
T Consensus 5 K~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~~ 44 (234)
T d1o5ia_ 5 KGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRS 44 (234)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHT
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHhc
Confidence 44555 567899999999999999999999998876653
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.79 E-value=0.042 Score=46.21 Aligned_cols=69 Identities=16% Similarity=0.187 Sum_probs=47.1
Q ss_pred ceEEEE--cccHHhHHHHHHHHH---CCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEe--CCCchHHHHH
Q 018506 46 ESVGFI--GLGNMGFRMASNLMK---AGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITM--LPSSSHVLDV 118 (355)
Q Consensus 46 mkIgiI--G~G~mG~~ia~~L~~---~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~--v~~~~~~~~v 118 (355)
-||+|| |.+.+|.++|+.|++ .|+.|++.+|++++++++.+. +.....+.++..+. +.++++++.+
T Consensus 6 gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~-------l~~~~~~~~~~~~~~Dvs~~~~v~~l 78 (259)
T d1oaaa_ 6 CAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEE-------LGAQQPDLKVVLAAADLGTEAGVQRL 78 (259)
T ss_dssp SEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHH-------HHHHCTTSEEEEEECCTTSHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHH-------HHhhcCCceEEEEEccCCCHHHHHHH
Confidence 589999 556899999999986 799999999999988776531 11111123344433 4566666666
Q ss_pred hcC
Q 018506 119 YNG 121 (355)
Q Consensus 119 l~~ 121 (355)
+..
T Consensus 79 ~~~ 81 (259)
T d1oaaa_ 79 LSA 81 (259)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.72 E-value=0.017 Score=47.87 Aligned_cols=38 Identities=18% Similarity=0.214 Sum_probs=32.0
Q ss_pred CCCceEEEE-cccHHhHHHHHHHHHCCC--cEEEEeCChhH
Q 018506 43 CQFESVGFI-GLGNMGFRMASNLMKAGY--KMAVHDVNCNV 80 (355)
Q Consensus 43 ~~~mkIgiI-G~G~mG~~ia~~L~~~G~--~V~v~dr~~~~ 80 (355)
|+.+||-|. |+|.+|+.+++.|.+.|. +|++.+|++..
T Consensus 12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~ 52 (232)
T d2bkaa1 12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLT 52 (232)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhh
Confidence 355789999 689999999999999984 89999997643
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.58 E-value=0.19 Score=42.71 Aligned_cols=69 Identities=14% Similarity=0.139 Sum_probs=46.2
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEe-----------CChhHHHHHHhCCCCCC------CCHHHHh-hcCCE
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHD-----------VNCNVMKMFSDMGVPTK------ETPFEVA-EASDV 104 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~d-----------r~~~~~~~l~~~g~~~~------~s~~e~~-~~aDi 104 (355)
..-.+|.|-|.|++|...|+.|.+.|..|+.++ .+.+.+........... -+..++. .+|||
T Consensus 34 L~gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~~G~i~~~~Gld~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~DI 113 (293)
T d1hwxa1 34 FGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVDCDI 113 (293)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEECCTTCCCHHHHHHHHHTTSSSTTCTTSCBCCSCGGGCCCSE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEccchhhccccccchHHHHHHHHHcCCeecccccccCCcccccCCccE
Confidence 455789999999999999999999999876553 34455555554321111 1222333 48999
Q ss_pred EEEeCCC
Q 018506 105 VITMLPS 111 (355)
Q Consensus 105 Vi~~v~~ 111 (355)
++-|--.
T Consensus 114 liPaA~~ 120 (293)
T d1hwxa1 114 LIPAASE 120 (293)
T ss_dssp EEECSSS
T ss_pred Eeecccc
Confidence 9887543
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=93.52 E-value=0.031 Score=46.31 Aligned_cols=34 Identities=24% Similarity=0.259 Sum_probs=31.1
Q ss_pred eEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhH
Q 018506 47 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNV 80 (355)
Q Consensus 47 kIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~ 80 (355)
.|.|||+|..|...|..|+++|++|+++++++..
T Consensus 4 DViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~ 37 (251)
T d2i0za1 4 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKL 37 (251)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 4899999999999999999999999999987543
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=93.46 E-value=0.079 Score=44.60 Aligned_cols=35 Identities=14% Similarity=0.318 Sum_probs=29.0
Q ss_pred ceEEEEcc-c--HHhHHHHHHHHHCCCcEEEEeCChhH
Q 018506 46 ESVGFIGL-G--NMGFRMASNLMKAGYKMAVHDVNCNV 80 (355)
Q Consensus 46 mkIgiIG~-G--~mG~~ia~~L~~~G~~V~v~dr~~~~ 80 (355)
+++-|.|. | .+|.++|+.|++.|++|++.+|+++.
T Consensus 6 K~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~ 43 (274)
T d2pd4a1 6 KKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESL 43 (274)
T ss_dssp CEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTT
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 45666675 5 49999999999999999999998643
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=93.45 E-value=0.045 Score=42.92 Aligned_cols=46 Identities=13% Similarity=0.099 Sum_probs=39.9
Q ss_pred CceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCC
Q 018506 45 FESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP 90 (355)
Q Consensus 45 ~mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~ 90 (355)
-.+|.|.|. |.+|....+.....|.+|++.++++++.+.+.+.|+.
T Consensus 28 g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~ 74 (171)
T d1iz0a2 28 GEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAE 74 (171)
T ss_dssp TCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCS
T ss_pred CCEEEEEeccccchhhhhhhhcccccccccccccccccccccccccc
Confidence 357999995 9999999999989999999999999998888887754
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=93.23 E-value=0.03 Score=48.72 Aligned_cols=33 Identities=27% Similarity=0.359 Sum_probs=29.7
Q ss_pred eEEEEcccHHhHHHHHHHH-----HCCCcEEEEeCChh
Q 018506 47 SVGFIGLGNMGFRMASNLM-----KAGYKMAVHDVNCN 79 (355)
Q Consensus 47 kIgiIG~G~mG~~ia~~L~-----~~G~~V~v~dr~~~ 79 (355)
-|.|||+|..|..+|..|+ ++|++|++++|.+.
T Consensus 9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~ 46 (360)
T d1pn0a1 9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST 46 (360)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCC
Confidence 4999999999999999996 57999999998764
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=93.23 E-value=0.022 Score=50.04 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=28.6
Q ss_pred CCceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeC
Q 018506 44 QFESVGFIG-LGNMGFRMASNLMKAGYKMAVHDV 76 (355)
Q Consensus 44 ~~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr 76 (355)
+||||-|.| .|-+|+.|+..|.++||+|.++++
T Consensus 1 ~~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~ 34 (346)
T d1oc2a_ 1 QFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVL 34 (346)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEE
T ss_pred CcCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEE
Confidence 479999995 999999999999999998666543
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=93.21 E-value=0.037 Score=42.99 Aligned_cols=33 Identities=21% Similarity=0.204 Sum_probs=29.8
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCC--cEEEEeCCh
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNC 78 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~--~V~v~dr~~ 78 (355)
+||.|||.|..|..+|..|.+.++ +|+++++++
T Consensus 3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~ 37 (186)
T d1fcda1 3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT 37 (186)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence 689999999999999999999885 688988776
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=93.19 E-value=0.06 Score=45.27 Aligned_cols=40 Identities=13% Similarity=0.308 Sum_probs=32.6
Q ss_pred ceEEEE--cccHHhHHHHHHHHHCCCcEEEEeCC-hhHHHHHH
Q 018506 46 ESVGFI--GLGNMGFRMASNLMKAGYKMAVHDVN-CNVMKMFS 85 (355)
Q Consensus 46 mkIgiI--G~G~mG~~ia~~L~~~G~~V~v~dr~-~~~~~~l~ 85 (355)
-|+++| |.+.+|.++|+.|++.|++|++.+|+ .+.++++.
T Consensus 4 gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~ 46 (260)
T d1x1ta1 4 GKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVR 46 (260)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHH
T ss_pred cCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHH
Confidence 468888 77789999999999999999999986 45555443
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=93.12 E-value=0.04 Score=48.56 Aligned_cols=32 Identities=28% Similarity=0.435 Sum_probs=27.1
Q ss_pred eEEEE-c-ccHHhHHHHHHHHHCCCcEEEEeCCh
Q 018506 47 SVGFI-G-LGNMGFRMASNLMKAGYKMAVHDVNC 78 (355)
Q Consensus 47 kIgiI-G-~G~mG~~ia~~L~~~G~~V~v~dr~~ 78 (355)
||.+| | +|.+|+.++..|.++||+|++.||.+
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~ 35 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRA 35 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence 67744 5 99999999999999999999999854
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=93.03 E-value=0.12 Score=43.14 Aligned_cols=37 Identities=22% Similarity=0.333 Sum_probs=28.9
Q ss_pred eEEEEccc---HHhHHHHHHHHHCCCcEEEEeCChhHHHH
Q 018506 47 SVGFIGLG---NMGFRMASNLMKAGYKMAVHDVNCNVMKM 83 (355)
Q Consensus 47 kIgiIG~G---~mG~~ia~~L~~~G~~V~v~dr~~~~~~~ 83 (355)
++-|-|++ .+|.++|+.|++.|++|.+.+|+++..+.
T Consensus 10 ~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~ 49 (256)
T d1ulua_ 10 KALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPE 49 (256)
T ss_dssp EEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHH
T ss_pred EEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHH
Confidence 34444764 59999999999999999999998655443
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.00 E-value=0.13 Score=40.10 Aligned_cols=46 Identities=22% Similarity=0.127 Sum_probs=39.4
Q ss_pred CceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCC
Q 018506 45 FESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP 90 (355)
Q Consensus 45 ~mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~ 90 (355)
-.+|.|+|+ |.+|....+.....|.+|++.++++++.+.+++.|+.
T Consensus 29 g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~ 75 (174)
T d1yb5a2 29 GESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAH 75 (174)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCS
T ss_pred CCEEEEEeccccccccccccccccCcccccccccccccccccccCcc
Confidence 357999995 9999999999999999999999999888887776643
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=92.65 E-value=0.045 Score=47.78 Aligned_cols=36 Identities=17% Similarity=0.101 Sum_probs=32.6
Q ss_pred ceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHH
Q 018506 46 ESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVM 81 (355)
Q Consensus 46 mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~ 81 (355)
+||-|.| .|.+|+.++..|.++||+|.+++|+..+.
T Consensus 9 KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~ 45 (356)
T d1rkxa_ 9 KRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTV 45 (356)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSS
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCcc
Confidence 8899996 89999999999999999999999976543
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=92.51 E-value=0.052 Score=45.21 Aligned_cols=39 Identities=26% Similarity=0.314 Sum_probs=33.6
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHH
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMF 84 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l 84 (355)
..|-|||+|..|...|..|+++|++|.++++++..-..+
T Consensus 5 ~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k~ 43 (253)
T d2gqfa1 5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKI 43 (253)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHH
T ss_pred CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCce
Confidence 359999999999999999999999999999986543333
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.49 E-value=0.054 Score=47.12 Aligned_cols=34 Identities=24% Similarity=0.285 Sum_probs=29.4
Q ss_pred ceEEEE--cccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 46 ESVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 46 mkIgiI--G~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
.||++| |+|.+|+.++..|.++||+|+++||.+.
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~ 36 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSS 36 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCc
Confidence 478655 7899999999999999999999998643
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=92.39 E-value=0.088 Score=44.13 Aligned_cols=39 Identities=15% Similarity=0.188 Sum_probs=30.8
Q ss_pred eEEEE--cccHHhHHHHHHHHHCCCcEEEE-eCChhHHHHHH
Q 018506 47 SVGFI--GLGNMGFRMASNLMKAGYKMAVH-DVNCNVMKMFS 85 (355)
Q Consensus 47 kIgiI--G~G~mG~~ia~~L~~~G~~V~v~-dr~~~~~~~l~ 85 (355)
|+.+| |.+.+|.++|+.|++.|++|++. +|+.+..+.+.
T Consensus 7 K~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~ 48 (259)
T d1ja9a_ 7 KVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVV 48 (259)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHH
Confidence 56666 77889999999999999999874 66666555544
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=91.82 E-value=0.059 Score=44.35 Aligned_cols=35 Identities=23% Similarity=0.359 Sum_probs=30.5
Q ss_pred eEEEE--cccHHhHHHHHHHHHCCCcEEEEeCChhHH
Q 018506 47 SVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVM 81 (355)
Q Consensus 47 kIgiI--G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~ 81 (355)
|+++| |.+.+|.++|+.|++.|++|++.+|+++..
T Consensus 2 K~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~ 38 (241)
T d1uaya_ 2 RSALVTGGASGLGRAAALALKARGYRVVVLDLRREGE 38 (241)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCSS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcccc
Confidence 56777 678999999999999999999999987643
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=91.55 E-value=0.13 Score=43.27 Aligned_cols=40 Identities=20% Similarity=0.349 Sum_probs=31.7
Q ss_pred ceEEEE--cccHHhHHHHHHHHHCCCcEEEEe-CChhHHHHHH
Q 018506 46 ESVGFI--GLGNMGFRMASNLMKAGYKMAVHD-VNCNVMKMFS 85 (355)
Q Consensus 46 mkIgiI--G~G~mG~~ia~~L~~~G~~V~v~d-r~~~~~~~l~ 85 (355)
|-|+|| |.+.+|.++|+.|++.|++|.+.+ |+.+..+.+.
T Consensus 2 ~pVAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~ 44 (284)
T d1e7wa_ 2 VPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALS 44 (284)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHH
Confidence 568999 667899999999999999998765 4555555544
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=91.42 E-value=3 Score=33.83 Aligned_cols=92 Identities=13% Similarity=0.147 Sum_probs=55.0
Q ss_pred CCCceEEEEcccHHhHHHHHHHH-HCCCcEEEEe-C----------ChhHHHHHHhCCCCC-------CCCHHHHhh-cC
Q 018506 43 CQFESVGFIGLGNMGFRMASNLM-KAGYKMAVHD-V----------NCNVMKMFSDMGVPT-------KETPFEVAE-AS 102 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~-~~G~~V~v~d-r----------~~~~~~~l~~~g~~~-------~~s~~e~~~-~a 102 (355)
.+..+|.|-|.|++|..+++.|. +.|..|+.++ . +.+.+..+.+..... ..+.++... +|
T Consensus 29 l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (234)
T d1b26a1 29 PKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERITNEELLELDV 108 (234)
T ss_dssp TTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHHHHSSCSTTCSSCEEECHHHHHTSCC
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHHHhhcceeccccceeecccccccccc
Confidence 45678999999999999999997 4688876543 2 333444443321111 124455554 89
Q ss_pred CEEEEeCCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCC
Q 018506 103 DVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 103 DiVi~~v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~ 144 (355)
||++-|--....-.+.... .+-++|+...+.+
T Consensus 109 DI~~PcA~~~~I~~~~a~~----------l~~~~I~e~AN~p 140 (234)
T d1b26a1 109 DILVPAALEGAIHAGNAER----------IKAKAVVEGANGP 140 (234)
T ss_dssp SEEEECSCTTCBCHHHHTT----------CCCSEEECCSSSC
T ss_pred ceeecchhcccccHHHHHH----------hhhceEeecCCCC
Confidence 9998885443222232222 1235777777655
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=91.34 E-value=0.074 Score=40.94 Aligned_cols=32 Identities=31% Similarity=0.485 Sum_probs=27.8
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCCh
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 78 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~ 78 (355)
.||.|||.|..|.-+|..|.+ +++|+++++.+
T Consensus 1 ~rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~ 32 (167)
T d1xhca1 1 SKVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEP 32 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-TSEEEEECSSS
T ss_pred CeEEEECCcHHHHHHHHHHHc-CCCEEEEeccc
Confidence 389999999999999999965 78999998753
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=91.08 E-value=0.16 Score=34.01 Aligned_cols=44 Identities=18% Similarity=0.274 Sum_probs=37.8
Q ss_pred CceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCC
Q 018506 45 FESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG 88 (355)
Q Consensus 45 ~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g 88 (355)
..+|-|.| .|.+|....+.+...|++|+...+++++.+.+++.|
T Consensus 32 ~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~~~lG 76 (77)
T d1o8ca2 32 DGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLG 76 (77)
T ss_dssp GCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHT
T ss_pred CCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHCC
Confidence 45788874 599999999998999999999999999998887654
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.03 E-value=0.04 Score=44.55 Aligned_cols=33 Identities=12% Similarity=0.145 Sum_probs=27.2
Q ss_pred ceEEEEcc-cHHhHHHHHHHHHCCCc--EEEEeCCh
Q 018506 46 ESVGFIGL-GNMGFRMASNLMKAGYK--MAVHDVNC 78 (355)
Q Consensus 46 mkIgiIG~-G~mG~~ia~~L~~~G~~--V~v~dr~~ 78 (355)
+||.|.|+ |.+|+.+++.|.+.||. |....|++
T Consensus 3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~ 38 (212)
T d2a35a1 3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKA 38 (212)
T ss_dssp CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSC
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCc
Confidence 68999976 99999999999999984 55555543
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.93 E-value=0.26 Score=38.43 Aligned_cols=44 Identities=23% Similarity=0.231 Sum_probs=38.0
Q ss_pred ceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCC
Q 018506 46 ESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGV 89 (355)
Q Consensus 46 mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~ 89 (355)
.+|.|.| +|.+|...++.+...|.+|++..+++++.+.+++.|+
T Consensus 27 ~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga 71 (183)
T d1pqwa_ 27 ERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGV 71 (183)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCC
T ss_pred CEEEEECCCCCcccccchhhccccccceeeecccccccccccccc
Confidence 5788887 5999999999999999999999999998888877654
|
| >d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=90.81 E-value=0.28 Score=38.73 Aligned_cols=67 Identities=19% Similarity=0.178 Sum_probs=50.1
Q ss_pred CCCceEEEEcc--cHHhHHHHHHHHHCCCcEEEEeCC-----hhHHHHHHh------CCCCCCCCHHHHhhcCCEEEEeC
Q 018506 43 CQFESVGFIGL--GNMGFRMASNLMKAGYKMAVHDVN-----CNVMKMFSD------MGVPTKETPFEVAEASDVVITML 109 (355)
Q Consensus 43 ~~~mkIgiIG~--G~mG~~ia~~L~~~G~~V~v~dr~-----~~~~~~l~~------~g~~~~~s~~e~~~~aDiVi~~v 109 (355)
-...||++||= -++...++..+.+-|.++.++... ++.++.+.+ ..+..+.++.++++++|+|..-.
T Consensus 3 l~~lkia~vGD~~nnV~~Sli~~~~~~G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvVyt~~ 82 (185)
T d1dxha2 3 LHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTDV 82 (185)
T ss_dssp GGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECC
T ss_pred CCCCEEEEEcCCcchHHHHHHHHHHHcCCEEEEEccHHHHhhhHHHHHHHHHhhccCCeEEEEeChhhccccccEEEeeh
Confidence 34579999994 489999999999999999998752 222332221 23567889999999999888654
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=90.60 E-value=0.15 Score=42.40 Aligned_cols=34 Identities=24% Similarity=0.445 Sum_probs=29.2
Q ss_pred EEEE--cccHHhHHHHHHHHHCCCcEEEEeCChhHH
Q 018506 48 VGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVM 81 (355)
Q Consensus 48 IgiI--G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~ 81 (355)
+++| |.+.+|.++|+.|+++|++|++.+|+.++.
T Consensus 3 vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~ 38 (266)
T d1mxha_ 3 AAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGA 38 (266)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHH
Confidence 5677 667799999999999999999999986653
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=90.45 E-value=0.15 Score=43.71 Aligned_cols=30 Identities=27% Similarity=0.372 Sum_probs=26.9
Q ss_pred eEEEE-cccHHhHHHHHHHHHCCCcEEEEeC
Q 018506 47 SVGFI-GLGNMGFRMASNLMKAGYKMAVHDV 76 (355)
Q Consensus 47 kIgiI-G~G~mG~~ia~~L~~~G~~V~v~dr 76 (355)
||-|. |+|.+|+.+++.|.++||+|+++|+
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~ 32 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQGIDLIVFDN 32 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred EEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence 67777 7899999999999999999999874
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=90.44 E-value=0.11 Score=43.83 Aligned_cols=33 Identities=21% Similarity=0.392 Sum_probs=29.9
Q ss_pred eEEEEcccHHhHHHHHHHHH-CCCcEEEEeCChh
Q 018506 47 SVGFIGLGNMGFRMASNLMK-AGYKMAVHDVNCN 79 (355)
Q Consensus 47 kIgiIG~G~mG~~ia~~L~~-~G~~V~v~dr~~~ 79 (355)
.|.|||+|.-|...|..|++ .|++|+++++.+.
T Consensus 35 DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~ 68 (278)
T d1rp0a1 35 DVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS 68 (278)
T ss_dssp EEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSS
T ss_pred CEEEECCCHHHHHHHHHHHHccCCeEEEEecCCC
Confidence 49999999999999999987 5999999998753
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=90.42 E-value=0.2 Score=44.50 Aligned_cols=48 Identities=15% Similarity=0.265 Sum_probs=36.4
Q ss_pred cccccCCCCCCCCC-ceEEEEcccHHhHHHHHHHHH------CCCcEEEEeCChh
Q 018506 32 MRRFFSSQVPSCQF-ESVGFIGLGNMGFRMASNLMK------AGYKMAVHDVNCN 79 (355)
Q Consensus 32 ~~~~~~~~~~~~~~-mkIgiIG~G~mG~~ia~~L~~------~G~~V~v~dr~~~ 79 (355)
.++|...-|.++.+ --|.|||+|.-|+..|..|++ +|++|.++++...
T Consensus 18 ~~~~~~~~m~~~~~e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~ 72 (380)
T d2gmha1 18 DKRWEGVNMERFAEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAH 72 (380)
T ss_dssp CGGGSSCCCCCCEEECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSS
T ss_pred CccccccCcccccccCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCC
Confidence 34555554433322 359999999999999999997 8999999998754
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=90.41 E-value=0.19 Score=41.93 Aligned_cols=41 Identities=12% Similarity=0.292 Sum_probs=32.4
Q ss_pred ceEEEEcc-cH--HhHHHHHHHHHCCCcEEEEeCChhHH-HHHHh
Q 018506 46 ESVGFIGL-GN--MGFRMASNLMKAGYKMAVHDVNCNVM-KMFSD 86 (355)
Q Consensus 46 mkIgiIG~-G~--mG~~ia~~L~~~G~~V~v~dr~~~~~-~~l~~ 86 (355)
+++-|.|+ |. +|.++|+.|++.|.+|++.+|+.++. +++.+
T Consensus 7 K~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~~~~~~~ 51 (268)
T d2h7ma1 7 KRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITD 51 (268)
T ss_dssp CEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHH
Confidence 45666685 65 99999999999999999999988775 33443
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=90.38 E-value=0.12 Score=44.49 Aligned_cols=32 Identities=19% Similarity=0.229 Sum_probs=28.0
Q ss_pred eEEEE--cccHHhHHHHHHHHHCCCcEEEEeCCh
Q 018506 47 SVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNC 78 (355)
Q Consensus 47 kIgiI--G~G~mG~~ia~~L~~~G~~V~v~dr~~ 78 (355)
|+.+| |.|.+|+.++..|.++||+|++++|..
T Consensus 2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~ 35 (339)
T d1n7ha_ 2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRS 35 (339)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCC
Confidence 45555 889999999999999999999999853
|
| >d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Thermotoga maritima [TaxId: 2336]
Probab=90.21 E-value=0.23 Score=39.59 Aligned_cols=38 Identities=16% Similarity=0.392 Sum_probs=30.0
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCC---cEEEEeCChhHHHH
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGY---KMAVHDVNCNVMKM 83 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~---~V~v~dr~~~~~~~ 83 (355)
|||-|||.|.-|..++.+|.+.|. +.+..|-+...++.
T Consensus 1 ~kI~viGvGGaG~n~v~~l~~~~~~~v~~iainTD~~~L~~ 41 (194)
T d1w5fa1 1 LKIKVIGVGGAGNNAINRMIEIGIHGVEFVAVNTDLQVLEA 41 (194)
T ss_dssp CCEEEEEEHHHHHHHHHHHHHHCCTTEEEEEEESCHHHHHT
T ss_pred CeEEEEEeCchHHHHHHHHHHcCCCceEEEEEcCCHHHHhc
Confidence 689999999999999999998875 34555666655543
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.15 E-value=0.18 Score=41.54 Aligned_cols=37 Identities=22% Similarity=0.309 Sum_probs=30.5
Q ss_pred CceEEEE--cccHHhHHHHHHHHHCCCcEEEEeCChhHH
Q 018506 45 FESVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVM 81 (355)
Q Consensus 45 ~mkIgiI--G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~ 81 (355)
+-|+.+| |.+.+|.++|+.|++.|++|.+.+|+.+..
T Consensus 6 ~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~ 44 (237)
T d1uzma1 6 VSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAP 44 (237)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchh
Confidence 3466666 566799999999999999999999986543
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=90.00 E-value=0.1 Score=40.61 Aligned_cols=33 Identities=24% Similarity=0.366 Sum_probs=28.8
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCCh
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 78 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~ 78 (355)
.+|.|||.|..|.-+|..|.+.|.+|++..+.+
T Consensus 4 ~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~ 36 (185)
T d1q1ra1 4 DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGD 36 (185)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred CCEEEECCcHHHHHHHHHHHHcCCceEEEEecC
Confidence 579999999999999999999999987765443
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=89.87 E-value=0.16 Score=42.11 Aligned_cols=39 Identities=13% Similarity=0.262 Sum_probs=29.6
Q ss_pred ceEEEEccc---HHhHHHHHHHHHCCCcEEEEeCChhHHHHH
Q 018506 46 ESVGFIGLG---NMGFRMASNLMKAGYKMAVHDVNCNVMKMF 84 (355)
Q Consensus 46 mkIgiIG~G---~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l 84 (355)
++|-|-|.+ .+|.++|+.|++.|++|++.+|+++..+.+
T Consensus 6 K~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~ 47 (258)
T d1qsga_ 6 KRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRV 47 (258)
T ss_dssp CEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHH
T ss_pred CEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 344455654 488999999999999999999986654443
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=89.65 E-value=0.064 Score=45.21 Aligned_cols=32 Identities=19% Similarity=0.394 Sum_probs=26.5
Q ss_pred ceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCC
Q 018506 46 ESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVN 77 (355)
Q Consensus 46 mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~ 77 (355)
|||-|.| .|.+|+.+...|.+.|+.|.+..++
T Consensus 1 MKILItG~tGfiG~~l~~~L~~~g~~v~~~~~~ 33 (298)
T d1n2sa_ 1 MNILLFGKTGQVGWELQRSLAPVGNLIALDVHS 33 (298)
T ss_dssp CEEEEECTTSHHHHHHHHHTTTTSEEEEECTTC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEECCC
Confidence 8999997 5999999999999998866554443
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=89.64 E-value=0.15 Score=45.16 Aligned_cols=31 Identities=32% Similarity=0.452 Sum_probs=28.6
Q ss_pred ceEEEE-cccHHhHHHHHHHHHCCCcEEEEeC
Q 018506 46 ESVGFI-GLGNMGFRMASNLMKAGYKMAVHDV 76 (355)
Q Consensus 46 mkIgiI-G~G~mG~~ia~~L~~~G~~V~v~dr 76 (355)
|||-|. |.|.+|+.++..|++.||+|+++|.
T Consensus 2 ~kILVTGatGfiG~~lv~~Ll~~g~~V~~iDn 33 (393)
T d1i24a_ 2 SRVMVIGGDGYCGWATALHLSKKNYEVCIVDN 33 (393)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEec
Confidence 789888 6899999999999999999999973
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=89.43 E-value=0.18 Score=36.42 Aligned_cols=34 Identities=12% Similarity=0.078 Sum_probs=28.7
Q ss_pred ceEEEEcccHHhHHHHHHHHH---CCCcEEEEeCChh
Q 018506 46 ESVGFIGLGNMGFRMASNLMK---AGYKMAVHDVNCN 79 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~---~G~~V~v~dr~~~ 79 (355)
.+|.|||.|..|.-+|..|.+ .|.+|+++.|.+.
T Consensus 19 ~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~ 55 (117)
T d1feca2 19 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDM 55 (117)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSS
T ss_pred CeEEEECCChHHHHHHHHhHhhcccccccceeccccc
Confidence 579999999999999987665 4789999988653
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.41 E-value=0.75 Score=39.13 Aligned_cols=34 Identities=21% Similarity=0.299 Sum_probs=29.6
Q ss_pred ceEEEE--cccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 46 ESVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 46 mkIgiI--G~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
-|+++| |.+.+|.++|..|++.|++|++.||+.+
T Consensus 7 gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~ 42 (302)
T d1gz6a_ 7 GRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGD 42 (302)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCch
Confidence 468888 7778999999999999999999987654
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=89.38 E-value=0.16 Score=38.67 Aligned_cols=33 Identities=18% Similarity=0.081 Sum_probs=28.6
Q ss_pred eEEEE--cccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 47 SVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 47 kIgiI--G~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
++-|+ |.|.+|..+|..|++.|++|+++.+.+.
T Consensus 41 ~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~ 75 (156)
T d1djqa2 41 RVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHL 75 (156)
T ss_dssp EEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred ceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCc
Confidence 44554 9999999999999999999999988754
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=89.31 E-value=0.07 Score=39.61 Aligned_cols=36 Identities=17% Similarity=0.340 Sum_probs=27.8
Q ss_pred ceEEEEcccHHhHHHHHHHH-HCCCcEE-EEeCChhHH
Q 018506 46 ESVGFIGLGNMGFRMASNLM-KAGYKMA-VHDVNCNVM 81 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~-~~G~~V~-v~dr~~~~~ 81 (355)
-+|.|+|+|++|..++..+. +.+|++. ++|-++++.
T Consensus 4 ~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~ 41 (126)
T d2dt5a2 4 WGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKV 41 (126)
T ss_dssp EEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTT
T ss_pred ceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHhc
Confidence 48999999999999998765 3467755 558777654
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=89.27 E-value=0.15 Score=36.97 Aligned_cols=34 Identities=12% Similarity=0.007 Sum_probs=27.7
Q ss_pred ceEEEEcccHHhHHHHHHHHH---CCCcEEEEeCChh
Q 018506 46 ESVGFIGLGNMGFRMASNLMK---AGYKMAVHDVNCN 79 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~---~G~~V~v~dr~~~ 79 (355)
.+|.|||.|.+|.-+|..|.+ +|.+|+++.+.+.
T Consensus 21 ~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~ 57 (117)
T d1aoga2 21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEM 57 (117)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSS
T ss_pred CeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccch
Confidence 579999999999999976664 4567999988653
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=89.26 E-value=0.17 Score=40.63 Aligned_cols=31 Identities=23% Similarity=0.175 Sum_probs=29.0
Q ss_pred eEEEEcccHHhHHHHHHHHHCCCcEEEEeCC
Q 018506 47 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVN 77 (355)
Q Consensus 47 kIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~ 77 (355)
-|.|||.|.-|...|..+++.|.+|.+++++
T Consensus 4 DvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~ 34 (217)
T d1gesa1 4 DYIAIGGGSGGIASINRAAMYGQKCALIEAK 34 (217)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence 3789999999999999999999999999875
|
| >d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain species: Streptococcus pyogenes [TaxId: 1314]
Probab=89.25 E-value=0.22 Score=35.66 Aligned_cols=69 Identities=13% Similarity=0.094 Sum_probs=50.0
Q ss_pred ceEEEEcc----------cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHH
Q 018506 46 ESVGFIGL----------GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 115 (355)
Q Consensus 46 mkIgiIG~----------G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~ 115 (355)
.+|||+|+ ..-..-+...|.+.|.+|.+||..-...+ ...+.....++.++.+.+|+||+.... ..+
T Consensus 16 k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g~~v~iyDP~v~~~~--~~~~~~~~~~l~~~~~~sDiII~~~~~-~~~ 92 (108)
T d1dlja3 16 KVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLE--SEDQSVLVNDLENFKKQANIIVTNRYD-NEL 92 (108)
T ss_dssp CEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCC--TTCCSEECCCHHHHHHHCSEEECSSCC-GGG
T ss_pred CEEEEEEEEECCCCcchhhhhHHHHHHHHhccccceeeecCCcChhH--hccCCEEEeCHHHHHhhCCEEEEcCCc-hHH
Confidence 47999998 45678899999999999999997654311 123455677999999999987765544 344
Q ss_pred HH
Q 018506 116 LD 117 (355)
Q Consensus 116 ~~ 117 (355)
.+
T Consensus 93 ~~ 94 (108)
T d1dlja3 93 QD 94 (108)
T ss_dssp GG
T ss_pred Hh
Confidence 33
|
| >d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Escherichia coli [TaxId: 562]
Probab=89.23 E-value=0.43 Score=34.50 Aligned_cols=104 Identities=13% Similarity=0.149 Sum_probs=73.2
Q ss_pred CCceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhh--cCCEEEEeCCCchHHHHHhc
Q 018506 44 QFESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAE--ASDVVITMLPSSSHVLDVYN 120 (355)
Q Consensus 44 ~~mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~--~aDiVi~~v~~~~~~~~vl~ 120 (355)
+..||-|.|. |.-|+.-++...+.|-+|. -..+|.+--+- -.|+.+.++..|+.+ .+|.=++.||.+...+.+++
T Consensus 5 k~trVlvQGiTG~~G~~ht~~m~~yGT~vV-aGVtPgkgG~~-~~giPVf~sV~eAv~~~~~~~SvIfVPp~~a~dA~~E 82 (119)
T d2nu7a1 5 KNTKVICQGFTGSQGTFHSEQAIAYGTKMV-GGVTPGKGGTT-HLGLPVFNTVREAVAATGATASVIYVPAPFCKDSILE 82 (119)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCEEE-EEECTTCTTEE-ETTEEEESSHHHHHHHHCCCEEEECCCGGGHHHHHHH
T ss_pred CCCcEEEEcCCCcHHHHHHHHHHHhCCceE-EEEccCCCCcc-cCCCchhhHHHHHHHHhCCCeEEEeccHHHHHHHHHH
Confidence 4468999998 9999999999999998855 23334442211 146888999999875 68999999998877777777
Q ss_pred CCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHh
Q 018506 121 GPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVS 156 (355)
Q Consensus 121 ~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~ 156 (355)
.++.-+ + .+++.+-.+++..+.++.+...
T Consensus 83 Ai~agI------~-~iV~ITEgIP~~D~~~i~~~~~ 111 (119)
T d2nu7a1 83 AIDAGI------K-LIITITEGIPTLDMLTVKVKLD 111 (119)
T ss_dssp HHHTTC------S-EEEECCCCCCHHHHHHHHHHHH
T ss_pred HHHCCC------C-EEEEecCCCCHHHHHHHHHHHh
Confidence 543222 1 3555566666776777766654
|
| >d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: Dhaf3308-like family: Dhaf3308-like domain: Hypothetical protein Dhaf 3308 species: Desulfitobacterium hafniense [TaxId: 49338]
Probab=89.22 E-value=0.14 Score=42.70 Aligned_cols=54 Identities=13% Similarity=0.097 Sum_probs=41.7
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITML 109 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v 109 (355)
-.||++||. + ++...+.+.|.++++++|+|. .+.......++++.+||+||++-
T Consensus 122 g~kV~vIG~--~--P~v~~l~~~~~~~~VlE~~p~-------~gd~p~~~~~~lLp~aD~viiTG 175 (251)
T d2h1qa1 122 GKKVGVVGH--F--PHLESLLEPICDLSILEWSPE-------EGDYPLPASEFILPECDYVYITC 175 (251)
T ss_dssp TSEEEEESC--C--TTHHHHHTTTSEEEEEESSCC-------TTCEEGGGHHHHGGGCSEEEEET
T ss_pred CCEEEEEec--c--hhHHHHHhcCCcEEEEeCCCC-------CCCCCchHHHHhhhcCCEEEEEe
Confidence 478999975 5 788888899999999999874 23333445667888999999885
|
| >d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=89.13 E-value=0.34 Score=39.03 Aligned_cols=40 Identities=13% Similarity=0.221 Sum_probs=31.3
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCc-E--EEEeCChhHHHH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYK-M--AVHDVNCNVMKM 83 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~-V--~v~dr~~~~~~~ 83 (355)
...||.|||.|.-|..++.+|.+.|.+ | +..|-+...+..
T Consensus 14 ~~~ki~ViGvGGaG~n~v~~l~~~~~~~v~~iainTD~~~L~~ 56 (209)
T d2vapa1 14 TKAKITVVGCGGAGNNTITRLKMEGIEGAKTVAINTDAQQLIR 56 (209)
T ss_dssp TCCCEEEEEEHHHHHHHHHHHHHHTCTTEEEEEEESBHHHHHT
T ss_pred cCCcEEEEEeCChHHHHHHHHHHcCCCceEEEEEeCCHHHHhc
Confidence 348999999999999999999998864 5 455666655544
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.10 E-value=0.2 Score=43.29 Aligned_cols=31 Identities=35% Similarity=0.454 Sum_probs=28.1
Q ss_pred ceEEEE-cccHHhHHHHHHHHHCCCcEEEEeC
Q 018506 46 ESVGFI-GLGNMGFRMASNLMKAGYKMAVHDV 76 (355)
Q Consensus 46 mkIgiI-G~G~mG~~ia~~L~~~G~~V~v~dr 76 (355)
.||-|. |.|.+|+.|++.|+++||+|++.|+
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~ 34 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDN 34 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence 479888 7899999999999999999999874
|
| >d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermus aquaticus [TaxId: 271]
Probab=89.00 E-value=0.18 Score=39.30 Aligned_cols=30 Identities=27% Similarity=0.448 Sum_probs=27.6
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEe
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHD 75 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~d 75 (355)
|||||=|.|++|+.+.+.|.+.+.+|...+
T Consensus 1 ikigINGfGRIGR~~~R~l~~~~i~iv~IN 30 (168)
T d2g82a1 1 MKVGINGFGRIGRQVFRILHSRGVEVALIN 30 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCEEEEE
T ss_pred CEEEEECCcHHHHHHHHHHhcCCCEEEEEC
Confidence 799999999999999999999999987775
|
| >d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Thermotoga maritima [TaxId: 2336]
Probab=88.76 E-value=0.52 Score=36.05 Aligned_cols=65 Identities=22% Similarity=0.182 Sum_probs=48.3
Q ss_pred CceEEEEcc--cHHhHHHHHHHHHCCCcEEEEeCCh-----hHHHH---H-Hh--CCCCCCCCHHHHhhcCCEEEEeC
Q 018506 45 FESVGFIGL--GNMGFRMASNLMKAGYKMAVHDVNC-----NVMKM---F-SD--MGVPTKETPFEVAEASDVVITML 109 (355)
Q Consensus 45 ~mkIgiIG~--G~mG~~ia~~L~~~G~~V~v~dr~~-----~~~~~---l-~~--~g~~~~~s~~e~~~~aDiVi~~v 109 (355)
..||++||= .++-..+...+.+-|.++++..... +..+. . .+ ..+...++++++++++|+|..-.
T Consensus 3 g~ki~~vGD~~nnV~~Sli~~~~~~g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ai~~aDviyt~~ 80 (161)
T d1vlva2 3 GVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTDV 80 (161)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEECC
T ss_pred CCEEEEEcCCccHHHHHHHHHHHHcCCEEEEecchhhhhhhhHHHHHHHHHhhcCCceEEEecHHHhhhhhhheeccc
Confidence 468999993 5799999999999999999886531 21111 1 11 23567789999999999999765
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=88.75 E-value=0.61 Score=36.01 Aligned_cols=44 Identities=16% Similarity=0.092 Sum_probs=37.3
Q ss_pred ceEEEE-cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCC
Q 018506 46 ESVGFI-GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGV 89 (355)
Q Consensus 46 mkIgiI-G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~ 89 (355)
.+|.|+ |.|.+|....+.....|.+|++.++++++.+.+.+.|+
T Consensus 30 ~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa 74 (179)
T d1qora2 30 EQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGA 74 (179)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTC
T ss_pred CEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCC
Confidence 579999 55669999999988899999999999999988876554
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.56 E-value=0.23 Score=42.51 Aligned_cols=31 Identities=26% Similarity=0.410 Sum_probs=28.4
Q ss_pred ceEEEE-cccHHhHHHHHHHHHCCCcEEEEeC
Q 018506 46 ESVGFI-GLGNMGFRMASNLMKAGYKMAVHDV 76 (355)
Q Consensus 46 mkIgiI-G~G~mG~~ia~~L~~~G~~V~v~dr 76 (355)
.||-|. |.|-+|+.++..|.+.||+|+++|+
T Consensus 2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~ 33 (312)
T d2b69a1 2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDN 33 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeC
Confidence 689888 6799999999999999999999986
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.51 E-value=0.21 Score=40.27 Aligned_cols=32 Identities=25% Similarity=0.347 Sum_probs=29.6
Q ss_pred eEEEEcccHHhHHHHHHHHHCCCcEEEEeCCh
Q 018506 47 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 78 (355)
Q Consensus 47 kIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~ 78 (355)
-|.|||.|.-|..-|..+++.|++|.++++.+
T Consensus 7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~~ 38 (233)
T d1v59a1 7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRG 38 (233)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence 38999999999999999999999999998753
|
| >d1pgja1 a.100.1.1 (A:179-478) 6-phosphogluconate dehydrogenase (6PGD) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Trypanosoma brucei [TaxId: 5691]
Probab=88.37 E-value=0.5 Score=40.25 Aligned_cols=154 Identities=8% Similarity=0.094 Sum_probs=86.1
Q ss_pred CHHHHHHHHHHHHHcCCCe--EEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHhcC-
Q 018506 196 SEDAYQAAKPLFLSMGKNT--IYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS------LGISASTLTKILNSSS- 266 (355)
Q Consensus 196 ~~~~~~~v~~ll~~~g~~~--~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~------~Gi~~~~~~~~~~~~~- 266 (355)
..+........+....... ...........+|.+.|.+.+..+..++|++.+.++ .++|..++.++.+.|+
T Consensus 116 ~k~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~Al~~~~i~syaQGf~LL~~as~~~~w~ldl~~Ia~iWr~GCI 195 (300)
T d1pgja1 116 YKTERQANASNAPGITQSPGYTLKNKSPSGPEIKQLYDSVCIAIISCYAQMFQCLREMDKVHNFGLNLPATIATFRAGCI 195 (300)
T ss_dssp THHHHHHHHHHSTTTTCCCCCCCSCCSTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHTTSSSST
T ss_pred ChHHHHHHHhhcccccCCcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCccchHHHHHhcCCce
Confidence 3444445555554443322 223345677889999999999999999999999765 3689999999998876
Q ss_pred CCcccccCCCCCCCcccCCCCCCCCCCCcc--hhhHHHHH-HHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHH
Q 018506 267 ARCWSSDSYNPVPGVMEGVPASRNYGGGFA--SKLMAKDL-NLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSC 343 (355)
Q Consensus 267 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~kd~-~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g~g~~d~~~ 343 (355)
-.++..+... ..+...+........|. +....... +.+...+.+.|+|+|.+.+++..+........+..-+-.
T Consensus 196 IRS~LL~~i~---~a~~~~~~l~~l~~~f~~~~~~~~~~~~r~v~~~~~~~gip~P~lssaL~y~~~~~~~~l~~anLIQ 272 (300)
T d1pgja1 196 LQGYLLKPMT---EAFEKNPNISNLMCAFQTEIRAGLQNYRDMVALITSKLEVSIPVLSASLNYVTAMFTPTLKYGQLVS 272 (300)
T ss_dssp TCBTTHHHHH---HHHHHCTTCSCTTGGGHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTCSCCTHHHHHH
T ss_pred eeHHHHHHHH---HHhhcCCccchhhHHHHHHHHHhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCCchhHHHH
Confidence 3444322110 00000000001111121 11111222 344556778899999999999877655444333211222
Q ss_pred HHHHHhcCC
Q 018506 344 VFQHYYGGK 352 (355)
Q Consensus 344 ~~~~~~~~~ 352 (355)
.-|=+|++|
T Consensus 273 AqRD~FGaH 281 (300)
T d1pgja1 273 LQRDVFGRH 281 (300)
T ss_dssp HHHHHHHCC
T ss_pred HHHhhcCCC
Confidence 333355555
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=88.31 E-value=0.21 Score=42.44 Aligned_cols=33 Identities=24% Similarity=0.340 Sum_probs=30.6
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCCh
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 78 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~ 78 (355)
--|.|||.|.-|...|..|+++|.+|+++++.+
T Consensus 17 ~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~ 49 (308)
T d1y0pa2 17 VDVVVVGSGGAGFSAAISATDSGAKVILIEKEP 49 (308)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 459999999999999999999999999999864
|
| >d2pgda1 a.100.1.1 (A:177-473) 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=88.25 E-value=0.83 Score=38.76 Aligned_cols=128 Identities=11% Similarity=0.152 Sum_probs=81.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHhcC-CCcccccCCCCCCCcccCCCCCCC--CC
Q 018506 222 NGAAAKICNNLTMAVSMLGVSEALTLGQSL------GISASTLTKILNSSS-ARCWSSDSYNPVPGVMEGVPASRN--YG 292 (355)
Q Consensus 222 ~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~------Gi~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~--~~ 292 (355)
....++.+.|.+.+..+...+|++.+.++. ++|..++.++.+.|+ -.++..+.... .++..+...+ +.
T Consensus 139 ~~~~i~~l~~al~~~~i~syaQGf~ll~~as~~~~w~ldl~~ia~iW~~GcIIrS~LL~~i~~---a~~~~~~l~nl~~~ 215 (297)
T d2pgda1 139 KKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLGKIKD---AFDRNPGLQNLLLD 215 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTTSSSTTCBTHHHHHHH---HHHHCTTCSCGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcCccHHHHHHHHcCCCeeeHHHHHHHHH---HHHhCCCccchhhc
Confidence 566788999999999999999999997653 688999999999876 35554321110 0100000000 11
Q ss_pred CCc--chhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHHHHHHHhcCCC
Q 018506 293 GGF--ASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGKD 353 (355)
Q Consensus 293 ~~~--~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~~~~ 353 (355)
+.| .+.....+.+.++..+-+.|+|+|.+.++...+........ ..-+-...|-+|++|.
T Consensus 216 ~~~~~~l~~~~~~~r~~v~~ai~~gip~P~lssaL~y~~~~~~~~l-p~~lIQAqRD~FG~H~ 277 (297)
T d2pgda1 216 DFFKSAVENCQDSWRRAISTGVQAGIPMPCFTTALSFYDGYRHAML-PANLIQAQRDYFGAHT 277 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHCSSC-THHHHHHHHHHHHCCC
T ss_pred HHHHHHHhhccHHHHHHHHHHHHcCCChHHHHHHHHHHHHhccCCc-hhHHHHHHHHHhcCCC
Confidence 111 23444556678999999999999999999987765443333 3334444455666653
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=87.91 E-value=0.22 Score=39.27 Aligned_cols=33 Identities=15% Similarity=0.107 Sum_probs=30.0
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCCh
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 78 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~ 78 (355)
.+|.|||.|.-|..-|..+++.|.+|.++++..
T Consensus 6 ~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~ 38 (192)
T d1vdca1 6 TRLCIVGSGPAAHTAAIYAARAELKPLLFEGWM 38 (192)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCcEEEEEeec
Confidence 579999999999999999999999999998643
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=87.90 E-value=0.24 Score=41.18 Aligned_cols=38 Identities=18% Similarity=0.175 Sum_probs=29.2
Q ss_pred eEEEE--cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHH
Q 018506 47 SVGFI--GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMF 84 (355)
Q Consensus 47 kIgiI--G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l 84 (355)
|+.+| |.+.+|..+|+.|++.|.+|++..|+.++.+.+
T Consensus 6 K~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~ 45 (254)
T d1sbya1 6 KNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTAL 45 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHH
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHH
Confidence 55555 566799999999999999988887666554443
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=87.60 E-value=0.23 Score=43.08 Aligned_cols=30 Identities=40% Similarity=0.708 Sum_probs=28.3
Q ss_pred eEEEEcccHHhHHHHHHHHHCCCcEEEEeC
Q 018506 47 SVGFIGLGNMGFRMASNLMKAGYKMAVHDV 76 (355)
Q Consensus 47 kIgiIG~G~mG~~ia~~L~~~G~~V~v~dr 76 (355)
-+.|||.|.-|..+|.+|+++|++|++..+
T Consensus 6 DviIVGsG~aG~v~A~~La~~G~kVlvLEa 35 (379)
T d2f5va1 6 DVVIVGSGPIGCTYARELVGAGYKVAMFDI 35 (379)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred cEEEECcCHHHHHHHHHHhhCCCeEEEEec
Confidence 388999999999999999999999999976
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=87.59 E-value=0.19 Score=41.73 Aligned_cols=35 Identities=23% Similarity=0.144 Sum_probs=30.3
Q ss_pred cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 52 GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 52 G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
|.+.+|.++|..|++.|++|.+.+|+.++.+++.+
T Consensus 8 as~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~ 42 (252)
T d1zmta1 8 VKHFGGMGSALRLSEAGHTVACHDESFKQKDELEA 42 (252)
T ss_dssp TTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHh
Confidence 45569999999999999999999999888777654
|
| >d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=87.55 E-value=1 Score=36.83 Aligned_cols=92 Identities=15% Similarity=0.219 Sum_probs=53.2
Q ss_pred CCCceEEEEcccHHhHHHHHHHHH-CCCcEE-EEeCC----------hhHHHHHHh-C-------CCCCCCCHHHHh-hc
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMK-AGYKMA-VHDVN----------CNVMKMFSD-M-------GVPTKETPFEVA-EA 101 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~-~G~~V~-v~dr~----------~~~~~~l~~-~-------g~~~~~s~~e~~-~~ 101 (355)
.+-++|+|-|.|++|..+++.|.+ .|..|+ +.|.+ .+.+.+... . +... -+.+++. .+
T Consensus 30 l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~G~d~~~l~~~~~~~~~~~~~~~~~~-~~~~~i~~~~ 108 (239)
T d1gtma1 30 LKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGATN-ITNEELLELE 108 (239)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHHHHHHHSSSTTCTTSEE-ECHHHHHHSC
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHhcCcceeeccccccceecCCcCCHHHHHHHHHhccccccCCCCee-eccccccccc
Confidence 355889999999999999999975 587765 33433 223322222 1 1111 2445544 58
Q ss_pred CCEEEEeCCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCH
Q 018506 102 SDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDP 145 (355)
Q Consensus 102 aDiVi~~v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~ 145 (355)
|||++-|-.....-++ .+. ..+-++|+...+...
T Consensus 109 ~DIl~PcA~~~~I~~~-------~a~---~i~ak~I~e~AN~p~ 142 (239)
T d1gtma1 109 VDVLAPAAIEEVITKK-------NAD---NIKAKIVAEVANGPV 142 (239)
T ss_dssp CSEEEECSCSCCBCTT-------GGG---GCCCSEEECCSSSCB
T ss_pred ccEEeeccccccccHH-------HHH---hccccEEEecCCCCC
Confidence 9999888644311111 111 123357777777653
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=87.44 E-value=0.37 Score=35.09 Aligned_cols=64 Identities=17% Similarity=0.186 Sum_probs=47.0
Q ss_pred CCceEEEEccc-----------HHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCc
Q 018506 44 QFESVGFIGLG-----------NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 44 ~~mkIgiIG~G-----------~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~ 112 (355)
...||-|||.| ..+...++.|.+.|+++++.|-||+.+ .++. .-+|-+.+---+.
T Consensus 3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeTV----------std~----d~aD~lYfeplt~ 68 (121)
T d1a9xa4 3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETV----------STDY----DTSDRLYFEPVTL 68 (121)
T ss_dssp SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSS----------TTST----TSSSEEECCCCSH
T ss_pred CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhhh----------hcCh----hhcCceEEccCCH
Confidence 45789999998 678889999999999999999998753 2333 2466666543355
Q ss_pred hHHHHHhcC
Q 018506 113 SHVLDVYNG 121 (355)
Q Consensus 113 ~~~~~vl~~ 121 (355)
+.+.++++.
T Consensus 69 e~v~~Ii~~ 77 (121)
T d1a9xa4 69 EDVLEIVRI 77 (121)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 677777653
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=87.36 E-value=0.34 Score=39.96 Aligned_cols=40 Identities=8% Similarity=0.146 Sum_probs=32.6
Q ss_pred eEEEE--cccHHhHHHHHHHHHCCC--cEEEEeCChhHHHHHHh
Q 018506 47 SVGFI--GLGNMGFRMASNLMKAGY--KMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 47 kIgiI--G~G~mG~~ia~~L~~~G~--~V~v~dr~~~~~~~l~~ 86 (355)
|..+| |.+.+|.++|+.|++.|+ .|+...|+.++++++.+
T Consensus 4 KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~ 47 (250)
T d1yo6a1 4 GSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKS 47 (250)
T ss_dssp SEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHT
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHH
Confidence 44555 778999999999999996 57777999988887765
|
| >d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Malate oxidoreductase (malic enzyme) species: Thermotoga maritima [TaxId: 2336]
Probab=87.32 E-value=3 Score=33.52 Aligned_cols=95 Identities=13% Similarity=0.122 Sum_probs=58.7
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCC--------hhHH----HHHHh--CCCCCCCCHHHHhhcCCEEEE
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVN--------CNVM----KMFSD--MGVPTKETPFEVAEASDVVIT 107 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~--------~~~~----~~l~~--~g~~~~~s~~e~~~~aDiVi~ 107 (355)
....||-|+|+|.-|..++..|.+.+. +++.+||. .... ..+.+ .......++.+++..+++++.
T Consensus 24 l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~g~~~~~g 103 (222)
T d1vl6a1 24 IEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADFFIG 103 (222)
T ss_dssp TTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSEEEE
T ss_pred hhhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEEEcCcccccccHHHHHHHhhhcchhhhcchHhhccCcceecc
Confidence 466899999999999999999998886 58888875 1111 11222 122345577888888887776
Q ss_pred eCCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHH
Q 018506 108 MLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ 146 (355)
Q Consensus 108 ~v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~ 146 (355)
........++.+.. .. +..+|.-+|+-.++
T Consensus 104 ~~~~~~~~~e~m~~---~~------~rPIIFpLSNPt~~ 133 (222)
T d1vl6a1 104 VSRGNILKPEWIKK---MS------RKPVIFALANPVPE 133 (222)
T ss_dssp CSCSSCSCHHHHTT---SC------SSCEEEECCSSSCS
T ss_pred ccccccccHHHHhh---cC------CCCEEEecCCCccc
Confidence 65322121222221 11 22477777776554
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.29 E-value=0.81 Score=42.26 Aligned_cols=36 Identities=22% Similarity=0.256 Sum_probs=30.9
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCCh
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNC 78 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~ 78 (355)
....+|.|||+|.+|+.++++|+..|. .++++|.+.
T Consensus 23 L~~s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d~ 59 (529)
T d1yova1 23 LESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQ 59 (529)
T ss_dssp HHHCEEEECCCSHHHHHHHHHHHTTTCSEEEEECCSB
T ss_pred HhCCCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCCc
Confidence 345789999999999999999999996 689987644
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=87.28 E-value=0.29 Score=41.66 Aligned_cols=32 Identities=22% Similarity=0.172 Sum_probs=28.0
Q ss_pred eEEEE-cccHHhHHHHHHHHHCCCcEEEEeCCh
Q 018506 47 SVGFI-GLGNMGFRMASNLMKAGYKMAVHDVNC 78 (355)
Q Consensus 47 kIgiI-G~G~mG~~ia~~L~~~G~~V~v~dr~~ 78 (355)
||-|. |+|.+|+.++..|.++||+|++++|..
T Consensus 2 ~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~ 34 (321)
T d1rpna_ 2 SALVTGITGQDGAYLAKLLLEKGYRVHGLVARR 34 (321)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred EEEEECCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence 56666 679999999999999999999999864
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=87.28 E-value=0.24 Score=39.62 Aligned_cols=32 Identities=25% Similarity=0.322 Sum_probs=29.5
Q ss_pred eEEEEcccHHhHHHHHHHHHCCCcEEEEeCCh
Q 018506 47 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 78 (355)
Q Consensus 47 kIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~ 78 (355)
-|.|||.|.-|...|..+++.|.+|+++++++
T Consensus 5 DvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~ 36 (221)
T d1dxla1 5 DVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRG 36 (221)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence 48999999999999999999999999998753
|
| >d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Homoserine dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.26 E-value=0.18 Score=39.19 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=23.0
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCC
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAG 68 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G 68 (355)
.++.+|+++|+|++|+.+++.|.++.
T Consensus 2 ~k~i~I~l~G~G~VG~~l~~~l~~~~ 27 (168)
T d1ebfa1 2 TKVVNVAVIGAGVVGSAFLDQLLAMK 27 (168)
T ss_dssp CSEEEEEEECCSHHHHHHHHHHHHCC
T ss_pred CCEEEEEEEeCCHHHHHHHHHHHHhH
Confidence 46689999999999999999999764
|
| >d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Thermus thermophilus [TaxId: 274]
Probab=87.11 E-value=0.49 Score=34.29 Aligned_cols=104 Identities=17% Similarity=0.218 Sum_probs=71.8
Q ss_pred CCceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhh--cCCEEEEeCCCchHHHHHhc
Q 018506 44 QFESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAE--ASDVVITMLPSSSHVLDVYN 120 (355)
Q Consensus 44 ~~mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~--~aDiVi~~v~~~~~~~~vl~ 120 (355)
+..||-|-|. |..|+.-++...+.|-+|.. ..+|.+--.-. .++.+.++..|+.+ .+|.=++.||.+...+.+++
T Consensus 6 k~trVivQGiTG~~G~~ht~~m~~yGT~iVa-GVtPgkgG~~~-~giPVf~tV~eAv~~~~~d~SvIfVPp~~a~dAi~E 83 (121)
T d1oi7a1 6 RETRVLVQGITGREGQFHTKQMLTYGTKIVA-GVTPGKGGMEV-LGVPVYDTVKEAVAHHEVDASIIFVPAPAAADAALE 83 (121)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCEEEE-EECTTCTTCEE-TTEEEESSHHHHHHHSCCSEEEECCCHHHHHHHHHH
T ss_pred CCCcEEEEcCCCcHHHHHHHHHHHhCCceEe-eeecCCCCcEE-ECCchHhhHHHHHHhcCCeEEEEeeCHHHHHHHHHH
Confidence 3468999997 99999999999999887552 23344422111 46788899999875 68999999998877777776
Q ss_pred CCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHh
Q 018506 121 GPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVS 156 (355)
Q Consensus 121 ~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~ 156 (355)
.++.-+ +.+++.+-.+++..+.++.+.+.
T Consensus 84 Ai~agI-------~liv~ITEgVPv~Dm~~i~~~~~ 112 (121)
T d1oi7a1 84 AAHAGI-------PLIVLITEGIPTLDMVRAVEEIK 112 (121)
T ss_dssp HHHTTC-------SEEEECCSCCCHHHHHHHHHHHH
T ss_pred HHhCCC-------cEEEEecCCCCHHHHHHHHHHHH
Confidence 543222 13555555566666666666654
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=87.01 E-value=0.12 Score=40.41 Aligned_cols=29 Identities=24% Similarity=0.414 Sum_probs=25.2
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEE
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVH 74 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~ 74 (355)
-+|.|||.|..|.-+|..|.+.|+++.+.
T Consensus 4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i~ 32 (183)
T d1d7ya1 4 APVVVLGAGLASVSFVAELRQAGYQGLIT 32 (183)
T ss_dssp SSEEEECCSHHHHHHHHHHHHHTCCSCEE
T ss_pred CCEEEECccHHHHHHHHHHHhcCCceEEE
Confidence 45999999999999999999999875544
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=86.99 E-value=0.24 Score=40.60 Aligned_cols=34 Identities=26% Similarity=0.379 Sum_probs=29.8
Q ss_pred ceEEEE-cccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 46 ESVGFI-GLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 46 mkIgiI-G~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
-||-|. |.+.+|.++++.|+++|++|++.||+++
T Consensus 3 gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~ 37 (235)
T d1ooea_ 3 GKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAN 37 (235)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence 468666 6789999999999999999999999865
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=86.99 E-value=0.13 Score=44.26 Aligned_cols=33 Identities=27% Similarity=0.335 Sum_probs=30.6
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCCh
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 78 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~ 78 (355)
.-|.|||.|.-|...|..|+++|++|+++++.+
T Consensus 24 ~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~ 56 (322)
T d1d4ca2 24 TDVVIIGSGGAGLAAAVSARDAGAKVILLEKEP 56 (322)
T ss_dssp CSEEEECSSHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred ceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 459999999999999999999999999999864
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=86.97 E-value=0.19 Score=39.48 Aligned_cols=34 Identities=15% Similarity=0.155 Sum_probs=30.5
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCCh
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 78 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~ 78 (355)
..+|.|||.|..|..-|..+++.|.+|+++++..
T Consensus 5 ~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~ 38 (190)
T d1trba1 5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGME 38 (190)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEEeec
Confidence 4579999999999999999999999999998753
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.93 E-value=0.31 Score=36.83 Aligned_cols=33 Identities=24% Similarity=0.384 Sum_probs=30.4
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDV 76 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr 76 (355)
+-++|-|||.|.+|..-++.|.++|-+|++++.
T Consensus 12 ~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap 44 (150)
T d1kyqa1 12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSP 44 (150)
T ss_dssp TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 457899999999999999999999999999964
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=86.82 E-value=0.32 Score=39.35 Aligned_cols=32 Identities=25% Similarity=0.293 Sum_probs=29.7
Q ss_pred eEEEEcccHHhHHHHHHHHHCCCcEEEEeCCh
Q 018506 47 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 78 (355)
Q Consensus 47 kIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~ 78 (355)
-|.|||.|.-|..-|..+++.|++|+++++.+
T Consensus 8 DviIIG~GPaGlsaA~~aa~~G~~V~viE~~~ 39 (229)
T d1ojta1 8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYK 39 (229)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 48999999999999999999999999998764
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=86.65 E-value=0.29 Score=42.59 Aligned_cols=30 Identities=23% Similarity=0.191 Sum_probs=28.0
Q ss_pred EEEEcccHHhHHHHHHHHHCCCcEEEEeCC
Q 018506 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVN 77 (355)
Q Consensus 48 IgiIG~G~mG~~ia~~L~~~G~~V~v~dr~ 77 (355)
|-|||.|.-|..+|.+|+++|++|++.++-
T Consensus 5 VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG 34 (367)
T d1n4wa1 5 AVVIGTGYGAAVSALRLGEAGVQTLMLEMG 34 (367)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEeCcCHHHHHHHHHHHHCcCeEEEEecC
Confidence 679999999999999999999999999873
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=86.46 E-value=0.36 Score=41.55 Aligned_cols=31 Identities=19% Similarity=0.119 Sum_probs=27.5
Q ss_pred ceEEEE-cccHHhHHHHHHHHHCCCcEEEEeC
Q 018506 46 ESVGFI-GLGNMGFRMASNLMKAGYKMAVHDV 76 (355)
Q Consensus 46 mkIgiI-G~G~mG~~ia~~L~~~G~~V~v~dr 76 (355)
++|-|. |.|.+|+.++..|.+.||+|++.||
T Consensus 17 k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~ 48 (341)
T d1sb8a_ 17 KVWLITGVAGFIGSNLLETLLKLDQKVVGLDN 48 (341)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CEEEEecCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence 456666 7899999999999999999999986
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=85.72 E-value=0.31 Score=40.23 Aligned_cols=66 Identities=15% Similarity=0.165 Sum_probs=43.5
Q ss_pred ceEEEEcc-cHHhHHHHHHHH---HCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEe--CCCchHHHHHh
Q 018506 46 ESVGFIGL-GNMGFRMASNLM---KAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITM--LPSSSHVLDVY 119 (355)
Q Consensus 46 mkIgiIG~-G~mG~~ia~~L~---~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~--v~~~~~~~~vl 119 (355)
++|-|-|+ ..+|.++|+.|+ +.|+.|++.+|++++++.+.+. . -...++.++. +.+++++++++
T Consensus 3 KtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~--------~--~~~~~~~~~~~Dvs~~~~v~~~~ 72 (248)
T d1snya_ 3 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDL--------A--KNHSNIHILEIDLRNFDAYDKLV 72 (248)
T ss_dssp SEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHH--------H--HHCTTEEEEECCTTCGGGHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHH--------H--hcCCcEEEEEEEeccHHHHHHHH
Confidence 45766654 789999999996 4789999999998877655321 1 1133444444 44555666665
Q ss_pred cC
Q 018506 120 NG 121 (355)
Q Consensus 120 ~~ 121 (355)
..
T Consensus 73 ~~ 74 (248)
T d1snya_ 73 AD 74 (248)
T ss_dssp HH
T ss_pred hh
Confidence 54
|
| >d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: 10-formyltetrahydrofolate dehydrogenase domain 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.55 E-value=0.37 Score=38.60 Aligned_cols=29 Identities=21% Similarity=0.259 Sum_probs=26.7
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEE
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVH 74 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~ 74 (355)
|||.|+|.+.+|..+...|.++||+|..+
T Consensus 1 MkI~~~G~~~~~~~~l~~L~~~~~~i~~V 29 (203)
T d2bw0a2 1 MKIAVIGQSLFGQEVYCHLRKEGHEVVGV 29 (203)
T ss_dssp CEEEEECCHHHHHHHHHHHHHTTCEEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHCCCcEEEE
Confidence 89999999999999999999999998643
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.15 E-value=1.2 Score=38.08 Aligned_cols=29 Identities=31% Similarity=0.484 Sum_probs=25.8
Q ss_pred EEEE-cccHHhHHHHHHHHHCCCcEEEEeC
Q 018506 48 VGFI-GLGNMGFRMASNLMKAGYKMAVHDV 76 (355)
Q Consensus 48 IgiI-G~G~mG~~ia~~L~~~G~~V~v~dr 76 (355)
|-|. |.|-+|+.++..|+++||+|+++|+
T Consensus 4 ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~ 33 (347)
T d1z45a2 4 VLVTGGAGYIGSHTVVELIENGYDCVVADN 33 (347)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred EEEeCCCcHHHHHHHHHHHHCcCeEEEEEC
Confidence 5555 7899999999999999999999975
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.02 E-value=0.35 Score=39.12 Aligned_cols=32 Identities=28% Similarity=0.256 Sum_probs=29.2
Q ss_pred eEEEEcccHHhHHHHHHHHHCCCcEEEEeCCh
Q 018506 47 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 78 (355)
Q Consensus 47 kIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~ 78 (355)
-|.|||.|.-|..-|..+++.|++|.++++.+
T Consensus 5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~~ 36 (235)
T d1h6va1 5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVT 36 (235)
T ss_dssp EEEEECCSHHHHHHHHHHGGGCCCEEEECCCC
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 37899999999999999999999999998653
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=84.91 E-value=0.35 Score=38.75 Aligned_cols=31 Identities=19% Similarity=0.201 Sum_probs=29.3
Q ss_pred eEEEEcccHHhHHHHHHHHHCCCcEEEEeCC
Q 018506 47 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVN 77 (355)
Q Consensus 47 kIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~ 77 (355)
.|-|||.|..|...|..+++.|.+|++++++
T Consensus 7 DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~ 37 (220)
T d1lvla1 7 TLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ 37 (220)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence 4999999999999999999999999999875
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=84.84 E-value=0.39 Score=41.81 Aligned_cols=32 Identities=25% Similarity=0.255 Sum_probs=29.0
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCC
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVN 77 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~ 77 (355)
--+-|||.|.-|..+|.+|+++|++|++..+-
T Consensus 8 ~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG 39 (370)
T d3coxa1 8 VPALVIGSGYGGAVAALRLTQAGIPTQIVEMG 39 (370)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 34789999999999999999999999999863
|
| >d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=84.84 E-value=0.54 Score=40.49 Aligned_cols=36 Identities=25% Similarity=0.316 Sum_probs=30.6
Q ss_pred eEEEE-ccc---HHhHHHHHHHHHCCCcEEEEeCChhHHH
Q 018506 47 SVGFI-GLG---NMGFRMASNLMKAGYKMAVHDVNCNVMK 82 (355)
Q Consensus 47 kIgiI-G~G---~mG~~ia~~L~~~G~~V~v~dr~~~~~~ 82 (355)
||++| |.| .+|.++|+.|++.|.+|.+.+++.....
T Consensus 3 kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~~~~~~ 42 (329)
T d1uh5a_ 3 DICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNI 42 (329)
T ss_dssp CEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECGGGHHH
T ss_pred cEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCchhhhh
Confidence 68888 866 6999999999999999999888765443
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=84.51 E-value=1.5 Score=33.82 Aligned_cols=45 Identities=16% Similarity=0.146 Sum_probs=38.3
Q ss_pred ceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCC
Q 018506 46 ESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP 90 (355)
Q Consensus 46 mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~ 90 (355)
.+|-|.|+ |.+|...++.....|.+|+...+++++.+.+++.|+.
T Consensus 31 ~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~ 76 (182)
T d1v3va2 31 ETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFD 76 (182)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCS
T ss_pred CEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhh
Confidence 56888877 7799998888889999999999999999888887643
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=84.51 E-value=0.47 Score=36.58 Aligned_cols=31 Identities=19% Similarity=0.241 Sum_probs=28.5
Q ss_pred eEEEEcccHHhHHHHHHHHHCCCcEEEEeCC
Q 018506 47 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVN 77 (355)
Q Consensus 47 kIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~ 77 (355)
.|.|||.|..|..-|..+++.|.+|.++++.
T Consensus 3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~ 33 (184)
T d1fl2a1 3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGER 33 (184)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred cEEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence 3789999999999999999999999999864
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.44 E-value=0.34 Score=41.34 Aligned_cols=34 Identities=21% Similarity=0.343 Sum_probs=30.2
Q ss_pred ceEEEEcccHHhHHHHHHHHHC--CCcEEEEeCChh
Q 018506 46 ESVGFIGLGNMGFRMASNLMKA--GYKMAVHDVNCN 79 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~--G~~V~v~dr~~~ 79 (355)
..|.|||.|.-|..-|..|+++ |++|+++++++.
T Consensus 51 ~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~ 86 (311)
T d2gjca1 51 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVA 86 (311)
T ss_dssp ESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSS
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCC
Confidence 5699999999999999999964 999999998653
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=84.42 E-value=0.59 Score=34.32 Aligned_cols=65 Identities=18% Similarity=0.250 Sum_probs=48.8
Q ss_pred CCCceEEEEccc-----------HHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCC
Q 018506 43 CQFESVGFIGLG-----------NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPS 111 (355)
Q Consensus 43 ~~~mkIgiIG~G-----------~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~ 111 (355)
....||-|||.| ..+.-.++.|.+.|+++++.|-||+.+ .++. +-+|-+.+---+
T Consensus 5 ~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~TV----------std~----d~aD~lYfePlt 70 (127)
T d1a9xa3 5 TDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATI----------MTDP----EMADATYIEPIH 70 (127)
T ss_dssp SSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTCG----------GGCG----GGSSEEECSCCC
T ss_pred CCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHhh----------hcCh----hhcceeeeecCC
Confidence 456899999997 568888999999999999999998753 2333 246777765445
Q ss_pred chHHHHHhcC
Q 018506 112 SSHVLDVYNG 121 (355)
Q Consensus 112 ~~~~~~vl~~ 121 (355)
.+.+.++++.
T Consensus 71 ~e~v~~Ii~~ 80 (127)
T d1a9xa3 71 WEVVRKIIEK 80 (127)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6788887764
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=84.40 E-value=0.34 Score=41.06 Aligned_cols=33 Identities=18% Similarity=0.082 Sum_probs=28.7
Q ss_pred CceEEEE-cccHHhHHHHHHHHHCCCcEEEEeCC
Q 018506 45 FESVGFI-GLGNMGFRMASNLMKAGYKMAVHDVN 77 (355)
Q Consensus 45 ~mkIgiI-G~G~mG~~ia~~L~~~G~~V~v~dr~ 77 (355)
++||-|. |.|.+|+.++..|.++||.|++.++.
T Consensus 2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~ 35 (315)
T d1e6ua_ 2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTR 35 (315)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCT
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCc
Confidence 4689888 78999999999999999999887643
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.16 E-value=0.51 Score=37.59 Aligned_cols=30 Identities=27% Similarity=0.280 Sum_probs=28.3
Q ss_pred EEEEcccHHhHHHHHHHHHCCCcEEEEeCC
Q 018506 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVN 77 (355)
Q Consensus 48 IgiIG~G~mG~~ia~~L~~~G~~V~v~dr~ 77 (355)
+.|||.|..|...|..+++.|.+|.++++.
T Consensus 6 viIIG~GpaG~~aA~~aar~G~kV~vIEk~ 35 (221)
T d3grsa1 6 YLVIGGGSGGLASARRAAELGARAAVVESH 35 (221)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence 789999999999999999999999999864
|
| >d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=84.10 E-value=0.87 Score=33.34 Aligned_cols=103 Identities=13% Similarity=0.126 Sum_probs=71.1
Q ss_pred CCceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhh--cCCEEEEeCCCchHHHHHhc
Q 018506 44 QFESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAE--ASDVVITMLPSSSHVLDVYN 120 (355)
Q Consensus 44 ~~mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~--~aDiVi~~v~~~~~~~~vl~ 120 (355)
+..||-|-|. |.-|+.-++...+.|-+|..- .+|.+--.. -.|+.+.++..|+.+ ++|.=++.||.+...+.+++
T Consensus 14 k~TrVivQGiTG~~G~~ht~~m~~YGT~iVaG-VtPgKgG~~-~~giPVf~tV~eA~~~~~~daSvIfVPp~~a~dAi~E 91 (130)
T d1euca1 14 KNTKVICQGFTGKQGTFHSQQALEYGTNLVGG-TTPGKGGKT-HLGLPVFNTVKEAKEQTGATASVIYVPPPFAAAAINE 91 (130)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCEEEEE-ECTTCTTCE-ETTEEEESSHHHHHHHHCCCEEEECCCHHHHHHHHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEe-eccCCCCcc-ccCccchhhHHHHHHhcCCcEEEEecCHHHHHHHHHH
Confidence 4578999998 999999999999999886532 334432111 146788899999875 79999999998877777777
Q ss_pred CCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHH
Q 018506 121 GPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAV 155 (355)
Q Consensus 121 ~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~ 155 (355)
.++.-+ + .+++.+=.+++..+.++.+++
T Consensus 92 Ai~agI------~-liV~ITEgIPv~Dm~~i~~~~ 119 (130)
T d1euca1 92 AIDAEV------P-LVVCITEGIPQQDMVRVKHRL 119 (130)
T ss_dssp HHHTTC------S-EEEECCCCCCHHHHHHHHHHH
T ss_pred HHhCCC------C-EEEEecCCCCHHHHHHHHHHH
Confidence 543222 1 345545555555555565554
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.07 E-value=0.44 Score=38.63 Aligned_cols=41 Identities=12% Similarity=-0.045 Sum_probs=35.2
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
...||-.+|||. | ..+..|++.|++|+++|.+++.++.+.+
T Consensus 45 ~~~rvLd~GCG~-G-~~a~~LA~~G~~V~gvD~S~~ai~~a~~ 85 (229)
T d2bzga1 45 SGLRVFFPLCGK-A-VEMKWFADRGHSVVGVEISELGIQEFFT 85 (229)
T ss_dssp CSCEEEETTCTT-C-THHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred CCCEEEEeCCCC-c-HHHHHHHhCCCcEEEEeCCHHHHHHHHH
Confidence 346899999999 4 6688899999999999999999887665
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.93 E-value=0.51 Score=34.98 Aligned_cols=34 Identities=24% Similarity=0.222 Sum_probs=28.5
Q ss_pred ceEEEEcccHHhHHHHHHHH----HCCCcEEEEeCChh
Q 018506 46 ESVGFIGLGNMGFRMASNLM----KAGYKMAVHDVNCN 79 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~----~~G~~V~v~dr~~~ 79 (355)
.+|.|||.|..|.-+|..|. +.|.+|+++++++.
T Consensus 38 k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~ 75 (137)
T d1m6ia2 38 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKG 75 (137)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEeccccc
Confidence 58999999999999998886 35889999877543
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=83.74 E-value=0.52 Score=41.22 Aligned_cols=32 Identities=19% Similarity=0.307 Sum_probs=27.7
Q ss_pred CceEEEE-cccHHhHHHHHHHHH-CCCcEEEEeC
Q 018506 45 FESVGFI-GLGNMGFRMASNLMK-AGYKMAVHDV 76 (355)
Q Consensus 45 ~mkIgiI-G~G~mG~~ia~~L~~-~G~~V~v~dr 76 (355)
-|||-|. |+|-+|+.++..|++ .||+|+++|+
T Consensus 2 ~MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~ 35 (383)
T d1gy8a_ 2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDS 35 (383)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEEC
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEec
Confidence 3799888 779999999999985 7999999974
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=83.21 E-value=0.59 Score=37.11 Aligned_cols=31 Identities=19% Similarity=0.299 Sum_probs=28.9
Q ss_pred eEEEEcccHHhHHHHHHHHHCCCcEEEEeCC
Q 018506 47 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVN 77 (355)
Q Consensus 47 kIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~ 77 (355)
.+-|||.|..|...|..+++.|.+|.++++.
T Consensus 5 DviVIG~GpaGl~aA~~aar~G~kV~vIEk~ 35 (223)
T d1ebda1 5 ETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG 35 (223)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEecC
Confidence 4889999999999999999999999999875
|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]
Probab=83.03 E-value=0.52 Score=41.10 Aligned_cols=30 Identities=27% Similarity=0.325 Sum_probs=27.8
Q ss_pred EEEEcccHHhHHHHHHHHHCCCcEEEEeCC
Q 018506 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVN 77 (355)
Q Consensus 48 IgiIG~G~mG~~ia~~L~~~G~~V~v~dr~ 77 (355)
+-|||.|.-|+.+|.+|+++|++|.+..+-
T Consensus 5 ~IIVGsG~aG~v~A~rLae~g~~VlvLEaG 34 (360)
T d1kdga1 5 YIIVGAGPGGIIAADRLSEAGKKVLLLERG 34 (360)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred EEEECcCHHHHHHHHHHhhCCCeEEEEEcc
Confidence 679999999999999999999999999764
|
| >d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=82.75 E-value=1 Score=30.79 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=30.0
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
|||-|||.|.=-.+|+..|.+..++++++--|+.
T Consensus 1 MkVLviGsGgREHAia~~l~~s~~~v~~~pGN~G 34 (90)
T d1vkza2 1 VRVHILGSGGREHAIGWAFAKQGYEVHFYPGNAG 34 (90)
T ss_dssp CEEEEEECSHHHHHHHHHHHHTTCEEEEEECCTT
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCeEEEecCCcc
Confidence 8999999999999999999999999988844543
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=82.71 E-value=0.5 Score=41.16 Aligned_cols=31 Identities=16% Similarity=0.201 Sum_probs=26.3
Q ss_pred ceEEEE-cccHHhHHHHHHHHHCCCcE-EEEeC
Q 018506 46 ESVGFI-GLGNMGFRMASNLMKAGYKM-AVHDV 76 (355)
Q Consensus 46 mkIgiI-G~G~mG~~ia~~L~~~G~~V-~v~dr 76 (355)
|||-|. |+|-+|+.++..|++.||+| .+.|+
T Consensus 1 MkILItG~tGfIGs~l~~~L~~~g~~vv~~~d~ 33 (361)
T d1kewa_ 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDK 33 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEEC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence 799888 68999999999999999985 45554
|
| >d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Bacillus subtilis [TaxId: 1423]
Probab=82.60 E-value=0.51 Score=35.85 Aligned_cols=61 Identities=20% Similarity=0.116 Sum_probs=46.3
Q ss_pred CceEEEEcc---cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEe
Q 018506 45 FESVGFIGL---GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITM 108 (355)
Q Consensus 45 ~mkIgiIG~---G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~ 108 (355)
..||++||= +++...++..+.+-|.++.+.... .... .+.......+++++++++|+|...
T Consensus 3 gl~i~~vGD~~~srv~~Sl~~~~~~~g~~~~i~~P~--~~~~-~~~~~~~~~~~~ea~~~aDviy~~ 66 (151)
T d2at2a2 3 GLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPS--EWQD-EENTFGTYVSMDEAVESSDVVMLL 66 (151)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHcCCcccccCCc--hhhc-cccceeEEEechhccccCceeeee
Confidence 478999997 689999999999999998887653 2211 123455677889999999988654
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=82.54 E-value=0.2 Score=42.97 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=24.0
Q ss_pred ceEEEE-cccHHhHHHHHHHHHCCCcEE
Q 018506 46 ESVGFI-GLGNMGFRMASNLMKAGYKMA 72 (355)
Q Consensus 46 mkIgiI-G~G~mG~~ia~~L~~~G~~V~ 72 (355)
|||-|. |+|.+|+.++..|.+.||+|.
T Consensus 1 MkIlItG~tGfIG~~l~~~L~~~g~~v~ 28 (322)
T d1r6da_ 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDV 28 (322)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTS
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCcc
Confidence 799888 789999999999999998643
|
| >d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: Methionyl-tRNAfmet formyltransferase species: Escherichia coli [TaxId: 562]
Probab=82.07 E-value=0.78 Score=36.57 Aligned_cols=30 Identities=17% Similarity=0.228 Sum_probs=27.0
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEE
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAV 73 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v 73 (355)
..|||.|+|.+.++..+...|.++|++|..
T Consensus 2 ~~mKI~f~G~~~~~~~~L~~L~~~~~~i~~ 31 (206)
T d1fmta2 2 ESLRIIFAGTPDFAARHLDALLSSGHNVVG 31 (206)
T ss_dssp CCCEEEEEECSHHHHHHHHHHHHTTCEEEE
T ss_pred CCcEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 469999999999999999999999999654
|
| >d2ftsa3 c.57.1.2 (A:499-653) Gephyrin, domain 5 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Molybdenum cofactor biosynthesis proteins superfamily: Molybdenum cofactor biosynthesis proteins family: MoeA central domain-like domain: Gephyrin, domain 5 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=82.03 E-value=0.9 Score=34.46 Aligned_cols=57 Identities=14% Similarity=0.098 Sum_probs=37.4
Q ss_pred hHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeC----CCchHHHHHhc
Q 018506 57 GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITML----PSSSHVLDVYN 120 (355)
Q Consensus 57 G~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v----~~~~~~~~vl~ 120 (355)
+..|+..|.+.|++|.-+..-++..+.+.+ .+.++++++|+||++- -....+.+++.
T Consensus 29 ~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~-------~l~~~~~~~DliittGG~s~g~~D~~~~~l~ 89 (155)
T d2ftsa3 29 RSTLLATIQEHGYPTINLGIVGDNPDDLLN-------ALNEGISRADVIITSGGVSMGEKDYLKQVLD 89 (155)
T ss_dssp HHHHHHHHHTTTCCEEEEEEECSSHHHHHH-------HHHHHHHHCSEEEEESCCSSSCCHHHHHHHH
T ss_pred HHHHHHHhcccccceEEEEEecCchhHHHH-------HHHHhhcccCEEEEeccccCCcchhhHHHHH
Confidence 567888888899998766554555555543 3556777899999873 22235555553
|
| >d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=81.67 E-value=0.67 Score=35.13 Aligned_cols=64 Identities=17% Similarity=0.121 Sum_probs=44.8
Q ss_pred CceEEEEccc---HHhHHHHHHHHHCCCcEEEEeCChhH---HHHHHhC--CCCCCCCHHHHhhcCCEEEEe
Q 018506 45 FESVGFIGLG---NMGFRMASNLMKAGYKMAVHDVNCNV---MKMFSDM--GVPTKETPFEVAEASDVVITM 108 (355)
Q Consensus 45 ~mkIgiIG~G---~mG~~ia~~L~~~G~~V~v~dr~~~~---~~~l~~~--g~~~~~s~~e~~~~aDiVi~~ 108 (355)
-.||+|||=+ ++...++..+.+-|.++.++...+.. ...+... .+..++++.++++++|+|...
T Consensus 3 gl~i~~vGD~~~sRv~~Sl~~~l~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvvy~~ 74 (153)
T d1pg5a2 3 GLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVT 74 (153)
T ss_dssp TCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEE
T ss_pred CCEEEEECCCCccHHHHHHHHHHHHcCCeeEEEecccccccchhhcccCCCeEEEEeCHHHHhhcCCeEEEe
Confidence 4689999974 48999999999999987655432211 1122222 345677999999999988754
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=81.53 E-value=0.9 Score=38.06 Aligned_cols=36 Identities=19% Similarity=0.246 Sum_probs=29.4
Q ss_pred ceEEEEccc---HHhHHHHHHHHHCCCcEEEEeCChhHH
Q 018506 46 ESVGFIGLG---NMGFRMASNLMKAGYKMAVHDVNCNVM 81 (355)
Q Consensus 46 mkIgiIG~G---~mG~~ia~~L~~~G~~V~v~dr~~~~~ 81 (355)
+++-|-|++ .+|.++|+.|++.|.+|++.+|+++..
T Consensus 9 K~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~ 47 (297)
T d1d7oa_ 9 KRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALN 47 (297)
T ss_dssp CEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHH
T ss_pred CEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchhhh
Confidence 455555875 599999999999999999999876543
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=81.27 E-value=0.75 Score=37.86 Aligned_cols=30 Identities=23% Similarity=0.269 Sum_probs=28.5
Q ss_pred EEEEcccHHhHHHHHHHHHCCCcEEEEeCC
Q 018506 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVN 77 (355)
Q Consensus 48 IgiIG~G~mG~~ia~~L~~~G~~V~v~dr~ 77 (355)
+.|||.|.-|...|..+++.|.+|.+++++
T Consensus 4 viVIG~G~aG~~aA~~aa~~G~~V~liE~~ 33 (259)
T d1onfa1 4 LIVIGGGSGGMAAARRAARHNAKVALVEKS 33 (259)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence 789999999999999999999999999975
|
| >d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=81.00 E-value=1.4 Score=33.21 Aligned_cols=65 Identities=17% Similarity=0.175 Sum_probs=49.2
Q ss_pred CceEEEEcc---cHHhHHHHHHHHHCCCcEEEEeCC-----hhHHHHHHhCC--CCCCCCHHHHhhcCCEEEEeC
Q 018506 45 FESVGFIGL---GNMGFRMASNLMKAGYKMAVHDVN-----CNVMKMFSDMG--VPTKETPFEVAEASDVVITML 109 (355)
Q Consensus 45 ~mkIgiIG~---G~mG~~ia~~L~~~G~~V~v~dr~-----~~~~~~l~~~g--~~~~~s~~e~~~~aDiVi~~v 109 (355)
-.||+|||= +++...++..+.+-|.++.++... ++..+.+.+.+ +..+.++.++++++|+|....
T Consensus 4 gl~i~~vGD~~~srV~~Sli~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~av~~aDvvy~~~ 78 (157)
T d1ml4a2 4 GLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTR 78 (157)
T ss_dssp SEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEECC
T ss_pred CCEEEEEcCCccChHHHHHHHHHHhcCCcEEEEccchhhcchHHHHHHHhhcccceeecCHHHhhccCcEEEeec
Confidence 468999998 678999999999999999888653 22234444443 345789999999999877664
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=80.93 E-value=0.68 Score=36.73 Aligned_cols=32 Identities=28% Similarity=0.283 Sum_probs=29.4
Q ss_pred eEEEEcccHHhHHHHHHHHHCCCcEEEEeCCh
Q 018506 47 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 78 (355)
Q Consensus 47 kIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~ 78 (355)
-|.|||.|.-|..-|..+++.|.+|.++++..
T Consensus 5 DviIIGgGpAGl~aA~~aar~G~~V~viE~~~ 36 (229)
T d3lada1 5 DVIVIGAGPGGYVAAIKSAQLGLKTALIEKYK 36 (229)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTCCEEEEECCB
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 38999999999999999999999999998753
|
| >d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=80.90 E-value=0.91 Score=36.06 Aligned_cols=36 Identities=11% Similarity=0.408 Sum_probs=27.8
Q ss_pred eEEEEcccHHhHHHHHHHHHCCC---cEEEEeCChhHHH
Q 018506 47 SVGFIGLGNMGFRMASNLMKAGY---KMAVHDVNCNVMK 82 (355)
Q Consensus 47 kIgiIG~G~mG~~ia~~L~~~G~---~V~v~dr~~~~~~ 82 (355)
+|-|||.|..|..++.+|.+.|. +.+.+|-+...+.
T Consensus 3 ~IkViGvGGaG~n~vn~~~~~~~~~v~~iainTD~~~L~ 41 (198)
T d1rq2a1 3 VIKVVGIGGGGVNAVNRMIEQGLKGVEFIAINTDAQALL 41 (198)
T ss_dssp CEEEEEEHHHHHHHHHHHHHTTCCSEEEEEEESCHHHHH
T ss_pred eEEEEEeCchHHHHHHHHHHcCCCCceEEEEcchHHHHh
Confidence 68899999999999999999886 3444565555444
|
| >d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Hypothetical protein YaaE species: Bacillus stearothermophilus [TaxId: 1422]
Probab=80.74 E-value=1.5 Score=34.68 Aligned_cols=48 Identities=15% Similarity=0.178 Sum_probs=35.2
Q ss_pred CCCceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCC
Q 018506 43 CQFESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLP 110 (355)
Q Consensus 43 ~~~mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~ 110 (355)
++.||||||-+ |+. ..+.+.|.+.|+++.+.+. ++ + ++++|.+|++=.
T Consensus 4 ~~~mkIgii~~~Gn~-~s~~~al~~~G~~~~~v~~-~~-----------------~-l~~~D~lIlPGG 52 (202)
T d1q7ra_ 4 QSNMKIGVLGLQGAV-REHVRAIEACGAEAVIVKK-SE-----------------Q-LEGLDGLVLPGG 52 (202)
T ss_dssp CCCCEEEEESCGGGC-HHHHHHHHHTTCEEEEECS-GG-----------------G-GTTCSEEEECCC
T ss_pred ccCCEEEEEECCCCH-HHHHHHHHHCCCcEEEECC-HH-----------------H-HhcCCEEEECCC
Confidence 45699999988 888 5556899999999887642 22 1 357888888763
|
| >d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Achromobacter xylosoxidans [TaxId: 85698]
Probab=80.32 E-value=1.2 Score=34.59 Aligned_cols=31 Identities=16% Similarity=0.291 Sum_probs=24.7
Q ss_pred CceEEEEcccHHhHHHHHHHHHCC----CcEEEEe
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAG----YKMAVHD 75 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G----~~V~v~d 75 (355)
.|||||=|.|++|+.+.+.+.+.+ .+|...+
T Consensus 1 tikigINGfGRIGR~v~R~~~~~~~~~~~~vvaIN 35 (173)
T d1obfo1 1 TIRVAINGYGRIGRNILRAHYEGGKSHDIEIVAIN 35 (173)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEE
T ss_pred CeEEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEc
Confidence 389999999999999999998643 3555554
|