Citrus Sinensis ID: 018522

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350----
Protein Sequence
MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLKWTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIYDPKRTDYSDFDEMFRQLRKEAEARAEELKKSKQVTKPMNNLKKQGGQLQKGGFERGSNRSGGGSANDDGDSDNMRGRKLENGHSNVGNVEIEESRVTGVANGKENTSSNIGAFDVSKLQKLRNKGGKKTDTVVSKGSNPDPKKKITKKNRVWDDSPPESKLDFTDPAGGNGSNIEVEAADHGESMMDKEEVFSSDSESEEDEEVGKHNKPDAKKTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVVCI
Secondary Structure (PSIPRED)
cccEEEEEccccEEEEEEcccccccccccHHHHHHHHHHcccccccccccccccccEEEEEEEEccccEEEEEEEccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccHHHHHHccccccccccccHHHHHHHHHcccccccHHcHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEcccEEEEEEccccccccccHHHHHHHHHHHHHcccccccccccccccEEEEEEEcccHcEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHcHHHHccccHHHHHHHHHHHHHHHcccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccEcccccccHHccccccccccccccccHHHcccccccccccccccccHHHHHHHHHHccccccccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccEEEc
Coil and Loop (DISEMBL)
MLEQLLIFTRGGLILWTCKELgnalkgspidTLIRSCLLEersglasfnydsagaaYTLKWTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFseiydpkrtdysdFDEMFRQLRKEAEARAEELKKSKqvtkpmnnlkkqggqlqkggfergsnrsgggsanddgdsdnmrgrklenghsnvgnveieesrvtgvangkentssnigafdvSKLQKLRnkggkktdtvvskgsnpdpkkkitkknrvwddsppeskldftdpaggngsnieveaadhgesmmdkeevfssdseseedeevgkhnkpdakktgwfSSMFQSIAgkanldkaDLEPALKALKDRLmtknvvci
Flexible Loop (DISEMBL)
MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLKWTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSeiydpkrtdySDFDEMFRQLRKEAEARAEElkkskqvtkpmnnlkkqggqlqkggfergsnrsgggsanddgdsdnMRGRKLenghsnvgnveieESRVTgvangkentssnigafdvsklqklrnkggkktdtvvskgsnpdpkkkitkknrvwddsppeskldftdpaggngSNIEVEaadhgesmMDKEEVFssdseseedeevgkhnkpdakktgwFSSMFQSIAGKANLDKADLEPALkalkdrlmtknvvci
Low Complexity Region (SEG)
MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLKWTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIYDPKRTDYSDFDEMFRQlrkeaearaeelkkSKQVTKPMNNlkkqggqlqkggfergsnrsgggsanddgdsdnMRGRKLENGHSNVGNVEIEESRVTGVANGKENTSSNIGAFDVSKLQKLRNKGGKKTDTVVSKGSNPDPKKKITKKNRVWDDSPPESKLDFTDPAGGNGSNIEVEAADHGESMMDKeevfssdseseedeevGKHNKPDAKKTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVVCI
Disordered region (IsUnstruct)
***QLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLKWTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIYD***********************************************************************************************************************************************************************************************************************WF***F*********************************
Disordered Region (DISOPRED)
MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLKWTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIYDPKRTDYSDFDEMFRQLR**********************************************************************************************************************************************************************************************************MFQSIAGKANLDKADLEPALKALKDRLMTKNVVCI
Disordered Region (DISEMBL)
MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLKWTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIYDPKRTDYSDFDEMFRQLRKEAEARAEELKKSKQVTKPMNNLKKQGGQLQKGGFER**************DSDNMRGRKLENGHSNVGNVEIEESRVTGVANGKENTSSNIGAFDVSKLQK***********************KITKKNRVWDDSPPESKLDFTDPAGGNGSNIEVEAADHGE***************************DAKKTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVVCI
Disordered Region (DISPRO)
MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLKWTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIYDPKRTDYSDFDEMFRQLRKEAEAR**********************************************************************************************************************************************************************************************TGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVVCI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLKWTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIYDPKRTDYSDFDEMFRQLRKEAEARAEELKKSKQVTKPMNNLKKQGGQLQKGGFERGSNRSGGGSANDDGDSDNMRGRKLENGHSNVGNVEIEESRVTGVANGKENTSSNIGAFDVSKLQKLRNKGGKKTDTVVSKGSNPDPKKKITKKNRVWDDSPPESKLDFTDPAGGNGSNIEVEAADHGESMMDKEEVFSSDSESEEDEEVGKHNKPDAKKTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVVCI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	354	2.2.26 [Sep-21-2011]
Q9DBG7	636	Signal recognition partic	yes	no	0.920	0.512	0.281	1e-23
Q54ZR7	615	Signal recognition partic	yes	no	0.262	0.151	0.505	5e-22
Q9U5L1	614	Signal recognition partic	yes	no	0.903	0.521	0.284	2e-21
Q3MHE8	639	Signal recognition partic	yes	no	0.906	0.502	0.272	4e-19
P06625	638	Signal recognition partic	yes	no	0.887	0.492	0.268	2e-18
P08240	638	Signal recognition partic	yes	no	0.915	0.507	0.270	2e-17

>sp|Q9DBG7|SRPR_MOUSE Signal recognition particle receptor subunit alpha OS=Mus musculus GN=Srpr PE=1 SV=1

 Score =  111 bits (277), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 106/377 (28%), Positives = 174/377 (46%), Gaps = 51/377 (13%)

Query: 1   MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLK 60
           ML+   IF++GGL+LW  + + ++  G P++ LIRS LL+ER G  SF ++    A TLK
Sbjct: 1   MLDFFTIFSKGGLVLWCFQGVSDSCTG-PVNALIRSVLLQERGGNNSFTHE----ALTLK 55

Query: 61  WTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIYDPKRTDYS---------DFDE 111
           +   N+  LVFV  +Q+IL L YVD L+  + + F + Y  +    S         DF  
Sbjct: 56  YKLDNQFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQN 115

Query: 112 MFRQLRKEAE----ARA----EELKKSKQVTKPMNNLKKQGGQLQKGGFERGSNRSGGGS 163
            F +L +EAE     RA    ++ + S++  KP+ ++ +  G+  K   E+  N      
Sbjct: 116 DFLRLLREAEESSKIRAPTTMKKFEDSEKAKKPVRSMIETRGEKTK---EKAKN------ 166

Query: 164 ANDDGDSDNMRGRKLENGHSNVGNVEIEESRVTGVANGKENTSSNIGAFDVSKLQKLRNK 223
                  +  RG K E     +   +   +  +G++ G EN   +       K ++   K
Sbjct: 167 -------NKKRGAKKEGSDGTLATSKTAPAEKSGLSAGPENGELSKEELIRRKREEFIQK 219

Query: 224 GGKKTDTVVSKGSNPDPKKKITKKNRVWDDSPPESK--LDFTDPAGGNGSNIEVEAADHG 281
            GK  D       +  PK+K  K  RVW+     +K  LD++ P     +N   EAA   
Sbjct: 220 HGKGLDKSSKSTKSDTPKEKGKKAPRVWELGGCANKEVLDYSTPT----TNGTPEAALSE 275

Query: 282 ESMMDK-----EEVFSSDSESEEDEEVGKHNKPDAKK--TGWFSSMFQSIAGKANLDKAD 334
           +  + +      ++   D  S +DE   ++ KP A K   G    M + + G  +L + D
Sbjct: 276 DINLIRGTGPGGQLQDLDCSSSDDEGATQNTKPSATKGTLGGMFGMLKGLVGSKSLSRED 335

Query: 335 LEPALKALKDRLMTKNV 351
           +E  L  ++D L+ KNV
Sbjct: 336 MESVLDKMRDHLIAKNV 352

Component of the SRP (signal recognition particle) receptor. Ensures, in conjunction with the signal recognition particle, the correct targeting of the nascent secretory proteins to the endoplasmic reticulum membrane system.
Mus musculus (taxid: 10090)

>sp|Q54ZR7|SRPR_DICDI Signal recognition particle receptor subunit alpha OS=Dictyostelium discoideum GN=srpr PE=3 SV=1

 Score =  105 bits (262), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 50/99 (50%), Positives = 69/99 (69%), Gaps = 6/99 (6%)

Query: 1  MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLK 60
          ML+   I T+GG++LW+ KE    +KGSPI++LI+  LLEERS   SF  DS    Y+LK
Sbjct: 1  MLDSFTILTKGGIVLWS-KEFAK-IKGSPINSLIKKVLLEERSAETSFQIDS----YSLK 54

Query: 61 WTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIY 99
          WTF NE  L+FV VYQ+I  LLY+++LL  +K+ F ++Y
Sbjct: 55 WTFSNEFDLIFVVVYQKIFTLLYIEELLTTVKKRFIKMY 93

Component of the SRP (signal recognition particle) receptor. Ensures, in conjunction with the signal recognition particle, the correct targeting of the nascent secretory proteins to the endoplasmic reticulum membrane system.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9U5L1|SRPR_DROME Signal recognition particle receptor subunit alpha homolog OS=Drosophila melanogaster GN=Gtp-bp PE=1 SV=2

 Score =  103 bits (258), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 103/362 (28%), Positives = 164/362 (45%), Gaps = 42/362 (11%)

Query: 1   MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLK 60
           ML+ ++IFT+GG++LW     GN+   S I++LIR  +LEER+  A + Y+    A  ++
Sbjct: 1   MLDFVVIFTKGGVVLWHSNASGNSF-ASCINSLIRGVILEERNTEAKY-YEEDHLA--VQ 56

Query: 61  WTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIY-DPKRTDYSDFDEMFRQLRKE 119
           +   NEL LV+ A++Q+++ L Y+D  LA M+ +F E Y D +  D  DFD  +R++   
Sbjct: 57  FKLDNELDLVYAAIFQKVIKLNYLDGFLADMQAAFKEKYGDIRLGDDYDFDREYRRVLSA 116

Query: 120 AEARAEELKKSKQVTKPMNNLKKQGGQLQKGGFERGSNRSGGGSANDDGDSDNMRGRKLE 179
           AE  + +  K+ +  +  N  +K             S ++      DD      R     
Sbjct: 117 AEEASAKQVKAPKTMRSYNESQK-------------SKKTVASMIQDDKKPVEKR----- 158

Query: 180 NGHSNVGNVEIEES-RVTGVANGKENTSSNIGAFDVSKLQKLRNKGGKKTDTVVSKGSNP 238
                   V I+E+   +        T S +    + K +KLR K    T       S  
Sbjct: 159 --------VNIQEAPPPSKSQPSSPPTGSPMDKIIMEKRRKLREK-LTPTKKTSPSDSKS 209

Query: 239 DPKKKITKKNRVWD---DSPPESKLDFT--DPAGGNGSNIEVEAADHGESMMDKEEVFSS 293
              +K  KK RVWD   +S   + LD +   P      NI  E     + ++   +V S 
Sbjct: 210 SKPEKAGKKPRVWDLGGNSKDAALLDRSRDSPDDVQYQNINSELVGTMQGVIRDLDVESE 269

Query: 294 DSESEEDE----EVGKHNKPDAKKTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTK 349
           D    ED     E  +  +    K G   S F+ I G   +  ADL+PAL+ ++D L++K
Sbjct: 270 DEADNEDASSEGEAEEQVQSKKGKRGGLLSYFKGIVGAKTMSLADLQPALEKMRDHLISK 329

Query: 350 NV 351
           NV
Sbjct: 330 NV 331

Component of the SRP (signal recognition particle) receptor. Ensures, in conjunction with the signal recognition particle, the correct targeting of the nascent secretory proteins to the endoplasmic reticulum membrane system (By similarity). May have a role in axonogenesis.

Drosophila melanogaster (taxid: 7227)

>sp|Q3MHE8|SRPR_BOVIN Signal recognition particle receptor subunit alpha OS=Bos taurus GN=SRPR PE=2 SV=1

 Score = 95.9 bits (237), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 105/385 (27%), Positives = 170/385 (44%), Gaps = 64/385 (16%)

Query: 1   MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLK 60
           ML+   IF++GGL+LW  + + ++  G P++ LIRS LL+ER G  SF ++    A TLK
Sbjct: 1   MLDFFTIFSKGGLVLWCFQGVSDSCTG-PVNALIRSVLLQERGGNNSFTHE----ALTLK 55

Query: 61  WTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIYDPKRTDYS---------DFDE 111
           +   N+  LVFV  +Q+IL L YVD L+  + + F + Y  +    S         DF  
Sbjct: 56  YKLDNQFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQN 115

Query: 112 MFRQLRKEAE----ARAEELKK----SKQVTKPMNNLKKQGGQLQKGGFERGSNRSGGGS 163
            F +L +EAE     RA    K    S++  KP+ ++ +  G+  K   +      G   
Sbjct: 116 DFLRLLREAEESSKIRAPTTMKKFEDSEKAKKPVRSMIETRGEKPKEKAKNNKKNKGAKK 175

Query: 164 ANDDGDSDNMRGRKLENGHSNVGNVEIEESRVTGVANGKENTSSNIGAFDVSKLQKLR-- 221
              DG     +    E                +G+  G EN        ++SK +++R  
Sbjct: 176 EGSDGPLATSKAAPAEK---------------SGLPVGPENGE------ELSKEEQIRRK 214

Query: 222 -----NKGGKKTDTVVSKGSNPDPKKKITKKNRVWD--DSPPESKLDFTDPAGGNGSNIE 274
                 K G+  +       +  PK+K  K  RVW    S  +  LD++ P     +N  
Sbjct: 215 REEFIQKHGRGMEKSSKSSKSDAPKEKGKKAPRVWALGGSANKEVLDYSTPT----TNGA 270

Query: 275 VEAADHGESMMDK-----EEVFSSDSESEEDEEVGKHN-KPDAKK--TGWFSSMFQSIAG 326
            EAA   +  + +      ++   D  S +DE   +++ KP A K   G    M + + G
Sbjct: 271 PEAAPPEDINLIRGTGPGRQLQDLDCSSSDDEGAAQNSTKPSATKGTLGGMFGMLKGLVG 330

Query: 327 KANLDKADLEPALKALKDRLMTKNV 351
             +L + D+E  L  ++D L+ KNV
Sbjct: 331 SKSLTREDMESVLDKMRDHLIAKNV 355

Component of the SRP (signal recognition particle) receptor. Ensures, in conjunction with the signal recognition particle, the correct targeting of the nascent secretory proteins to the endoplasmic reticulum membrane system.

Bos taurus (taxid: 9913)

>sp|P06625|SRPR_CANFA Signal recognition particle receptor subunit alpha OS=Canis familiaris GN=SRPR PE=2 SV=2

 Score = 93.6 bits (231), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 105/391 (26%), Positives = 175/391 (44%), Gaps = 77/391 (19%)

Query: 1   MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLK 60
           ML+   IF++GGL+LW  + + ++  G P++ LIRS LL+ER G  SF ++    A TLK
Sbjct: 1   MLDFFTIFSKGGLVLWCFQGVSDSCTG-PVNALIRSVLLQERGGNNSFTHE----ALTLK 55

Query: 61  WTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIYDPKRTDYS------------- 107
           +   N+  LVFV  +Q+IL L YVD L+  + + F + Y  +    S             
Sbjct: 56  YKLDNQFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQN 115

Query: 108 DFDEMFRQLRKEAEARA----EELKKSKQVTKPMNNLKKQGGQLQKGGFERGSNRSGGGS 163
           DF  + R+  + ++ RA    ++ + S++  KP+ ++ +  G+  K   +    +     
Sbjct: 116 DFLRLLREREESSKIRAPTTMKKFEDSEKAKKPVRSMIETRGEKPKEKAKNSKKKGAKKE 175

Query: 164 ANDDGDSDNMRGRKLENGHSNVGNVEIEESRVTGVANGKENTSSNIGAFDVSKLQKLRNK 223
           ++D           L  G +    V  E+S   G+  G EN        ++SK + +R K
Sbjct: 176 SSDG---------PLATGKA----VPAEKS---GLPAGPEN------GVELSKEELIRRK 213

Query: 224 ----------GGKKTDTVVSKGSNPD-PKKKITKKNRVWDDSPPESK--LDFTDPAGGNG 270
                     G +K+    SK +  D PK+K  K  RVW      +K  LD++ P     
Sbjct: 214 REEFIQKHGRGLEKS----SKSTKSDAPKEKGKKAPRVWALGGCANKEVLDYSAPTTNGA 269

Query: 271 SNIE-------VEAADHGESMMDKEEVFSSDSESEEDEEVGKH-NKPDAKK--TGWFSSM 320
            +         +     G  + D       D  S +DEE  ++ +KP A K   G    M
Sbjct: 270 PDAAPPEDINLIRGTGPGGQLQDL------DCSSSDDEETAQNASKPSATKGTLGGMFGM 323

Query: 321 FQSIAGKANLDKADLEPALKALKDRLMTKNV 351
            + + G  +L + D+E  L  ++D L+ KNV
Sbjct: 324 LKGLVGSKSLSREDMESVLDKMRDHLIAKNV 354

Component of the SRP (signal recognition particle) receptor. Ensures, in conjunction with the signal recognition particle, the correct targeting of the nascent secretory proteins to the endoplasmic reticulum membrane system.

Canis familiaris (taxid: 9615)

>sp|P08240|SRPR_HUMAN Signal recognition particle receptor subunit alpha OS=Homo sapiens GN=SRPR PE=1 SV=2

 Score = 90.5 bits (223), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 103/381 (27%), Positives = 169/381 (44%), Gaps = 57/381 (14%)

Query: 1   MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLK 60
           ML+   IF++GGL+LW  + + ++  G P++ LIRS LL+ER G  SF ++    A TLK
Sbjct: 1   MLDFFTIFSKGGLVLWCFQGVSDSCTG-PVNALIRSVLLQERGGNNSFTHE----ALTLK 55

Query: 61  WTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIYDPKRTDYS---------DFDE 111
           +   N+  LVFV  +Q+IL L YVD L+  + + F + Y  +    S         DF  
Sbjct: 56  YKLDNQFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQN 115

Query: 112 MFRQLRKEAEARAEELKKSKQVTKPMNNLKKQGGQLQKGGFERGSNRSGGGSANDDGDSD 171
            F +L +EAE       +S ++  P    K +  +  K    R    + G    +   + 
Sbjct: 116 DFLRLLREAE-------ESSKIRAPTTMKKFEDSEKAKKPV-RSMIETRGEKPKEKAKNS 167

Query: 172 NMRGRKLENGHSNVGNVEIEESRVTGVANGKENTSSNIGAFDVSKLQKLR-------NKG 224
             +G K E     +   +   +  +G+  G EN        ++SK + +R        K 
Sbjct: 168 KKKGAKKEGSDGPLATSKPVPAEKSGLPVGPEN------GVELSKEELIRRKREEFIQKH 221

Query: 225 GKKTDTVVSKGSNPDPKKKITKKNRVWDDSPPESK--LDFTDPAGGNGS---------NI 273
           G+  +       +  PK+K  K  RVW+     +K  LD++ P   NG+         N+
Sbjct: 222 GRGMEKSNKSTKSDAPKEKGKKAPRVWELGGCANKEVLDYSTPT-TNGTPEAALSEDINL 280

Query: 274 EVEAADHGESMMDKEEVFSSDSESEEDEEVGKHN-KPDAKK--TGWFSSMFQSIAGKANL 330
            +     G  + D       D  S +DE   +++ KP A K   G    M + + G  +L
Sbjct: 281 -IRGTGSGGQLQD------LDCSSSDDEGAAQNSTKPSATKGTLGGMFGMLKGLVGSKSL 333

Query: 331 DKADLEPALKALKDRLMTKNV 351
            + D+E  L  ++D L+ KNV
Sbjct: 334 SREDMESVLDKMRDHLIAKNV 354

Component of the SRP (signal recognition particle) receptor. Ensures, in conjunction with the signal recognition particle, the correct targeting of the nascent secretory proteins to the endoplasmic reticulum membrane system.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	354
449453958	617	PREDICTED: signal recognition particle r	0.977	0.560	0.775	1e-146
224091775	624	predicted protein [Populus trichocarpa]	0.983	0.557	0.750	1e-138
255577019	618	signal recognition particle receptor alp	0.974	0.558	0.774	1e-136
225445848	616	PREDICTED: signal recognition particle r	0.974	0.560	0.761	1e-135
297798906	633	signal recognition particle receptor alp	0.985	0.551	0.702	1e-129
15234792	634	signal recognition particle receptor sub	0.983	0.548	0.694	1e-126
449530510	291	PREDICTED: LOW QUALITY PROTEIN: signal r	0.819	0.996	0.756	1e-123
356517002	623	PREDICTED: signal recognition particle r	0.974	0.553	0.649	1e-117
357480047	631	Signal recognition particle receptor sub	0.949	0.532	0.617	1e-106
356562565	626	PREDICTED: signal recognition particle r	0.968	0.547	0.596	1e-102

>gi|449453958|ref|XP_004144723.1| PREDICTED: signal recognition particle receptor subunit alpha homolog [Cucumis sativus]

 Score =  523 bits (1347), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 273/352 (77%), Positives = 302/352 (85%), Gaps = 6/352 (1%)

Query: 1   MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLK 60
           MLEQLLIFTRGGLILWTCKELGNAL+GSPIDTLIRSCLLEERSG AS+NYD+ GAAYTLK
Sbjct: 1   MLEQLLIFTRGGLILWTCKELGNALRGSPIDTLIRSCLLEERSGAASYNYDAPGAAYTLK 60

Query: 61  WTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIYDPKRTDYSDFDEMFRQLRKEA 120
           WTFHNELGLVFVAVYQRILHLLYVDDLLAM+KQ FSEIYDPKR  Y DFDE FRQLR EA
Sbjct: 61  WTFHNELGLVFVAVYQRILHLLYVDDLLAMVKQGFSEIYDPKRMVYDDFDETFRQLRMEA 120

Query: 121 EARAEELKKSKQVTKPMNNLKKQGGQLQKGGFERGSNRSGGGSANDDGDSDNMRGRKLEN 180
           EAR  ELKK+KQV KP+NN +KQ GQ QK GF  G N+       DDGD++  +G KLEN
Sbjct: 121 EARTNELKKTKQVGKPLNNARKQ-GQDQKTGF--GENKKSNSGLADDGDAERTKGHKLEN 177

Query: 181 GHSNVGNVEIEESRVTGVANGKENTSSNIGAFDVSKLQKLRNKGGKKTDTVVSKGSNPDP 240
           G+SN GN  + ES++T V NGKENTSSN+GAFDV+KLQKLR+KGGKKTD V +KGS  +P
Sbjct: 178 GYSN-GN-HVIESKLTAVVNGKENTSSNVGAFDVNKLQKLRSKGGKKTDPVANKGSKEEP 235

Query: 241 KKKITKKNRVWDDSPPESKLDFTDPAGGNG-SNIEVEAADHGESMMDKEEVFSSDSESEE 299
           KKK+TKKNRVWD+ P E+KLDFTDP G NG +NI+V AAD G+SMMDKEEVFSSDSE EE
Sbjct: 236 KKKVTKKNRVWDEKPTEAKLDFTDPVGENGDNNIDVLAADQGQSMMDKEEVFSSDSEDEE 295

Query: 300 DEEVGKHNKPDAKKTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNV 351
           DEE  K +KPDAKK GWFSSMFQSI+GKA+LDKADLEPALKALKDRLMTKNV
Sbjct: 296 DEEGDKGSKPDAKKKGWFSSMFQSISGKASLDKADLEPALKALKDRLMTKNV 347

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224091775|ref|XP_002309350.1| predicted protein [Populus trichocarpa] gi|222855326|gb|EEE92873.1| predicted protein [Populus trichocarpa]

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 268/357 (75%), Positives = 301/357 (84%), Gaps = 9/357 (2%)

Query: 1   MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLK 60
           MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSG AS+NYD+ GA+YTLK
Sbjct: 1   MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGTASYNYDAPGASYTLK 60

Query: 61  WTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIYDPKRTDYSDFDEMFRQLRKEA 120
           WTFHN+LGLVFVAVYQRILHLLYVD+LLAM+K  FS+IYDPKR +Y DFDE FRQLRKEA
Sbjct: 61  WTFHNDLGLVFVAVYQRILHLLYVDELLAMVKHEFSQIYDPKRVEYFDFDETFRQLRKEA 120

Query: 121 EARAEELKKSKQVTKPMNNLKKQGGQLQKGGFERGSNRSGGGSANDDGDSDNMRGRKLEN 180
           EARAEEL+K K V K +N+ +K    ++KG    G N+     AN+ G+ D+ +GRKLEN
Sbjct: 121 EARAEELRKVKPVGKGVNDGRKL--VMKKGSGFGGGNKKNKSEANEGGNGDDGKGRKLEN 178

Query: 181 GHSNVGN---VEIEESRVTGVANGKENTSSNIGAFDVSKLQKLRNKGGKKTD--TVVSKG 235
           GHSN GN   V +E +R  G+ANGKEN SSN  AFDV+KLQKL++KGGKKT   +VVSKG
Sbjct: 179 GHSN-GNHNAVVVEGNRGMGLANGKENASSNNEAFDVTKLQKLKSKGGKKTSDTSVVSKG 237

Query: 236 SNPDPKKKITKKNRVWDDSPPESKLDFTDPAGGNGS-NIEVEAADHGESMMDKEEVFSSD 294
           SN DPKKK+TKKNRVWDDSP ++KLDFTD   GNG+ NIEV AAD GESMMDKEE+ SSD
Sbjct: 238 SNVDPKKKVTKKNRVWDDSPKDAKLDFTDHVEGNGNENIEVVAADQGESMMDKEEIVSSD 297

Query: 295 SESEEDEEVGKHNKPDAKKTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNV 351
           SE EEDEEV K +KPDAKK GWFSSMFQSIAGKANL+KADLEPALKALKDRLMTKNV
Sbjct: 298 SEDEEDEEVSKDSKPDAKKKGWFSSMFQSIAGKANLEKADLEPALKALKDRLMTKNV 354

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577019|ref|XP_002529394.1| signal recognition particle receptor alpha subunit, putative [Ricinus communis] gi|223531142|gb|EEF32990.1| signal recognition particle receptor alpha subunit, putative [Ricinus communis]

 Score =  490 bits (1261), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 274/354 (77%), Positives = 297/354 (83%), Gaps = 9/354 (2%)

Query: 1   MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLK 60
           MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSG AS+NYD+ GAAYTLK
Sbjct: 1   MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGAASYNYDAPGAAYTLK 60

Query: 61  WTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIYDPKRTDYSDFDEMFRQLRKEA 120
           WTFHNELGLVFVAVYQRILHLLYVD+LLAM+K+ FSEIYD KR +Y+DFDE FRQLRKEA
Sbjct: 61  WTFHNELGLVFVAVYQRILHLLYVDELLAMVKREFSEIYDHKRLEYNDFDETFRQLRKEA 120

Query: 121 EARAEELKKSKQVTKPMNNLKKQGGQLQKGGFERGSNRSGGGSANDDGDSDNMRGRKLEN 180
           EARAEELKKSKQV KP+N+ KKQ G ++KGGF+ G+ +      ND GD DN +G KLEN
Sbjct: 121 EARAEELKKSKQVGKPVNDGKKQ-GLVRKGGFQGGNKKK--IDGNDGGDDDNGKGYKLEN 177

Query: 181 GHSNVGNVEIEESRVTGV--ANGKENTSSNIGAFDVSKLQKLRNKGGKKTDT-VVSKGSN 237
           GHSN   V+IE SR +GV  ANGKEN SSNI AFDV+KLQK R KG KK DT VVSKG N
Sbjct: 178 GHSNGNLVDIEGSR-SGVANANGKENASSNIAAFDVTKLQK-RGKGAKKIDTVVVSKGPN 235

Query: 238 PDPKKKITKKNRVWDDSPPESKLDFTDPAGGNGSNIEVEAADHGESMMDKEEVFSSDSES 297
            DPKKKITKKNRVWDDSP ESKLDFTDP      NIEV A DHGESMMDKE++  S    
Sbjct: 236 VDPKKKITKKNRVWDDSPSESKLDFTDPVENGNENIEVVATDHGESMMDKEDI-ISSDSE 294

Query: 298 EEDEEVGKHNKPDAKKTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNV 351
            EDEEVGK +KP AKK GWFSSMFQSIAGKANL+K+DLEPALKALKDRLMTKNV
Sbjct: 295 SEDEEVGKESKPGAKKKGWFSSMFQSIAGKANLEKSDLEPALKALKDRLMTKNV 348

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445848|ref|XP_002278056.1| PREDICTED: signal recognition particle receptor subunit alpha [Vitis vinifera]

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 268/352 (76%), Positives = 292/352 (82%), Gaps = 7/352 (1%)

Query: 1   MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLK 60
           MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSG AS+NYD+ GAAYTLK
Sbjct: 1   MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGAASYNYDAPGAAYTLK 60

Query: 61  WTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIYDPKRTDYSDFDEMFRQLRKEA 120
           WTFHNELGLVFVAVYQRILHLLYVDDLLAM+K+ FS IYDPKRT Y DFDE FRQLR EA
Sbjct: 61  WTFHNELGLVFVAVYQRILHLLYVDDLLAMLKREFSVIYDPKRTAYDDFDETFRQLRMEA 120

Query: 121 EARAEELKKSKQVTKPMNNLKKQGGQLQKGGFERGSNRSGGGSANDDGDSDNMRGRKLEN 180
           EARAEELKKSK V KP+NN KKQ GQ+QK            G +    D  +  GRK+EN
Sbjct: 121 EARAEELKKSKPVAKPVNNSKKQ-GQVQK--VGFEGGNKKKGGSGPGSDGGDGNGRKMEN 177

Query: 181 GHSNVGNVEIEESRVTGVANGKENTSSNIGAFDVSKLQKLRNKGGKKTDTVVSKGSNPDP 240
           GH+N GN   +E++V  VANGKEN SSNIGAFDV+KLQKLR KGGKKTDTVV+KGS  DP
Sbjct: 178 GHAN-GNT--DETKVALVANGKENASSNIGAFDVNKLQKLRAKGGKKTDTVVNKGSKVDP 234

Query: 241 KKKITKKNRVWDDSPPESKLDFTDPAGGNG-SNIEVEAADHGESMMDKEEVFSSDSESEE 299
            KKITKKNRVWD SP ESKLDFTDPA  NG  N  + AAD GESMMDKEE+ SS+SE+EE
Sbjct: 235 NKKITKKNRVWDVSPTESKLDFTDPADQNGDENAVIVAADEGESMMDKEEIVSSESETEE 294

Query: 300 DEEVGKHNKPDAKKTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNV 351
           DEE+ K +K + KK GWFS+MFQSIAGKANL+KADLEPALKALKDRLMTKNV
Sbjct: 295 DEEMEKDSKMETKKKGWFSAMFQSIAGKANLEKADLEPALKALKDRLMTKNV 346

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798906|ref|XP_002867337.1| signal recognition particle receptor alpha subunit family protein [Arabidopsis lyrata subsp. lyrata] gi|297313173|gb|EFH43596.1| signal recognition particle receptor alpha subunit family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 258/367 (70%), Positives = 299/367 (81%), Gaps = 18/367 (4%)

Query: 1   MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLK 60
           MLEQLLIFTRGGLILWTCKE+GNALKGSPIDTLIRSCLLEERSG  SFNYD+ GAAYTLK
Sbjct: 1   MLEQLLIFTRGGLILWTCKEIGNALKGSPIDTLIRSCLLEERSGAVSFNYDAPGAAYTLK 60

Query: 61  WTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIYDPKRTDYSDFDEMFRQLRKEA 120
           WTFHN+LGLVFVAVYQRILHLLYVDDLL+M+KQSFSEIYDPKR  Y DFDE FRQLR EA
Sbjct: 61  WTFHNDLGLVFVAVYQRILHLLYVDDLLSMVKQSFSEIYDPKRMAYDDFDETFRQLRIEA 120

Query: 121 EARAEELKKSKQVTKPMNNLKKQGGQLQKGGFERGSNR-SGGGSANDDGDSDNMRGRKLE 179
           EARAEEL+K+KQV KP++++KKQ GQ+ K G E G+ R S GGS  DDGD +  +   L 
Sbjct: 121 EARAEELRKTKQVGKPVSSVKKQ-GQVSKPGLEGGNKRVSEGGSKKDDGDGNKAKVSTLT 179

Query: 180 NGHSNVGNVEIE-ESRVTGVANGKENTSSNIGAFDVSKLQKLRNK------GGKKTDTVV 232
           NGHSN GN ++E +S+ T +ANGKENTSSN+ A D+SKLQKLR+K      G +KTD++ 
Sbjct: 180 NGHSN-GNHQMEDDSQETDLANGKENTSSNV-AVDLSKLQKLRSKGVRGRGGVRKTDSIG 237

Query: 233 SKGSN---PDPKKKITKKNRVWDDSPP-ESKLDFTDPAGGNGSN--IEVEAADHGESMMD 286
           +K S     +P KK TKKNRVWDD+ P +SKLDFTD    NG+N  +++ AAD GESMMD
Sbjct: 238 NKSSKVAAAEPAKKATKKNRVWDDAAPKQSKLDFTDSIAENGNNDHVDIVAADQGESMMD 297

Query: 287 KEEVFSSDSESEEDEEVGKHNKP-DAKKTGWFSSMFQSIAGKANLDKADLEPALKALKDR 345
           KEEVFSSDSESE+D+E G   KP +AKK GWFSS+FQSI GKANL++ DL PALKALK+R
Sbjct: 298 KEEVFSSDSESEDDDEPGSDEKPAEAKKKGWFSSVFQSITGKANLERTDLGPALKALKER 357

Query: 346 LMTKNVV 352
           LMTKNVV
Sbjct: 358 LMTKNVV 364

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15234792|ref|NP_194789.1| signal recognition particle receptor subunit alpha [Arabidopsis thaliana] gi|7269961|emb|CAB79778.1| signal recognition particle receptor-like protein [Arabidopsis thaliana] gi|18086492|gb|AAL57699.1| AT4g30600/F17I23_60 [Arabidopsis thaliana] gi|22137194|gb|AAM91442.1| AT4g30600/F17I23_60 [Arabidopsis thaliana] gi|332660385|gb|AEE85785.1| signal recognition particle receptor subunit alpha [Arabidopsis thaliana]

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 255/367 (69%), Positives = 293/367 (79%), Gaps = 19/367 (5%)

Query: 1   MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLK 60
           MLEQLLIFTRGGLILWTCKE+GNALKGSPIDTLIRSCLLEERSG  SFNYD+ GAAYTLK
Sbjct: 1   MLEQLLIFTRGGLILWTCKEIGNALKGSPIDTLIRSCLLEERSGAVSFNYDAPGAAYTLK 60

Query: 61  WTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIYDPKRTDYSDFDEMFRQLRKEA 120
           WTFHN+LGLVFVAVYQRILHLLYVDDLL+M+KQSFSE+YDPKR  Y DFDE FRQLR EA
Sbjct: 61  WTFHNDLGLVFVAVYQRILHLLYVDDLLSMVKQSFSEVYDPKRMAYDDFDETFRQLRIEA 120

Query: 121 EARAEELKKSKQVTKPMNNLKKQGGQLQKGGFERGSNR--SGGGSANDDGDSDN-MRGRK 177
           EARAEEL+K+KQV KP+ ++KKQ GQ+ K G E G+ R  S GGS  DDGD  N  +   
Sbjct: 121 EARAEELRKTKQVGKPVTSVKKQ-GQVSKPGLEGGNKRVSSEGGSKKDDGDGGNKAKVST 179

Query: 178 LENGHSNVGNVEIEE--SRVTGVANGKENTSSNIGAFDVSKLQKLRNK------GGKKTD 229
           L NGHSN GN ++E+       +ANGKENTSSN+ A D+SKLQKLR+K      G +KTD
Sbjct: 180 LTNGHSN-GNHQMEDDSQETNDLANGKENTSSNV-AVDLSKLQKLRSKGVRGRGGVRKTD 237

Query: 230 TVVSKGSN-PDPKKKITKKNRVWDDSPP-ESKLDFTDPAGGNGSN--IEVEAADHGESMM 285
           ++ +K S   +P KK TKKNRVWDD+ P +SKLDFTD    NG+N  +++ AAD GESMM
Sbjct: 238 SIGNKSSKVAEPAKKATKKNRVWDDAAPKQSKLDFTDSIDENGNNDHVDIVAADQGESMM 297

Query: 286 DKEEVFSSDSESEEDEEVGKHNKP-DAKKTGWFSSMFQSIAGKANLDKADLEPALKALKD 344
           DKEEVFSSDSESE+D+E G   KP  AKK GWFSS+FQSI GKANL++ DL PALKALK+
Sbjct: 298 DKEEVFSSDSESEDDDEPGSDEKPAQAKKKGWFSSVFQSITGKANLERTDLGPALKALKE 357

Query: 345 RLMTKNV 351
           RLMTKNV
Sbjct: 358 RLMTKNV 364

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449530510|ref|XP_004172238.1| PREDICTED: LOW QUALITY PROTEIN: signal recognition particle receptor subunit alpha homolog, partial [Cucumis sativus]

 Score =  446 bits (1146), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 224/296 (75%), Positives = 250/296 (84%), Gaps = 6/296 (2%)

Query: 1   MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLK 60
           MLEQLLIFTRGGLILWTCKELGNAL+GSPIDTLIRSCLLEERSG AS+NYD+ GAAYTLK
Sbjct: 1   MLEQLLIFTRGGLILWTCKELGNALRGSPIDTLIRSCLLEERSGAASYNYDAPGAAYTLK 60

Query: 61  WTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIYDPKRTDYSDFDEMFRQLRKEA 120
           WTFHNELGLVFVAVYQRILHLLYVDDLLAM+KQ FSEIYDPKR  Y DFDE FRQLR EA
Sbjct: 61  WTFHNELGLVFVAVYQRILHLLYVDDLLAMVKQGFSEIYDPKRMVYDDFDETFRQLRMEA 120

Query: 121 EARAEELKKSKQVTKPMNNLKKQGGQLQKGGFERGSNRSGGGSANDDGDSDNMRGRKLEN 180
           EAR  EL K+KQV KP+NN +KQ GQ QK GF  G N+       DDGD++  +G KLEN
Sbjct: 121 EARTNELXKTKQVGKPLNNARKQ-GQDQKTGF--GENKKSNSGLADDGDAERTKGHKLEN 177

Query: 181 GHSNVGNVEIEESRVTGVANGKENTSSNIGAFDVSKLQKLRNKGGKKTDTVVSKGSNPDP 240
           G+SN GN  + ES++T V NGKENTSSN+GAFDV+KLQKLR+KGGKKTD V +KGS  +P
Sbjct: 178 GYSN-GN-HVIESKLTAVVNGKENTSSNVGAFDVNKLQKLRSKGGKKTDPVANKGSKEEP 235

Query: 241 KKKITKKNRVWDDSPPESKLDFTDPAGGNG-SNIEVEAADHGESMMDKEEVFSSDS 295
           KKK+TKKNRVWD+ P E+KLDFTDP G NG +NI+V AAD G+SMMDKEEVFSSDS
Sbjct: 236 KKKVTKKNRVWDEKPTEAKLDFTDPVGENGDNNIDVLAADQGQSMMDKEEVFSSDS 291

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517002|ref|XP_003527179.1| PREDICTED: signal recognition particle receptor subunit alpha-like [Glycine max]

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 233/359 (64%), Positives = 275/359 (76%), Gaps = 14/359 (3%)

Query: 1   MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLK 60
           MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSG A++NYD+ GA+YTLK
Sbjct: 1   MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGAAAYNYDAPGASYTLK 60

Query: 61  WTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIYDPKRTDYSDFDEMFRQLRKEA 120
           WTFHN+LGLVFVAVYQRILHLLYV+DLLAM+K+ FS++YDPK T Y DFDE FRQL+ EA
Sbjct: 61  WTFHNDLGLVFVAVYQRILHLLYVEDLLAMVKREFSQVYDPKTTAYPDFDETFRQLKMEA 120

Query: 121 EARAEELKKSKQVTKPM-NNLKKQGGQLQKGGFERGSNRSGGGSANDDGDSDNMRGRKLE 179
            AR E+LK+S   + P+  N KKQ     K GFE G+ +   G         +   RKLE
Sbjct: 121 LARTEDLKRSN--SNPVAGNAKKQVQGNDKSGFEGGNKKKKSGGGA----DGDDGKRKLE 174

Query: 180 NGHSNVGNVEIEESRVTGVANGKENTSSNIGAFDVSKLQKLRNKGGKKTDTVVSKGSNPD 239
           NGHSN   +  +++ ++   NG+ N S N+GAFDV KLQKLR KGGKKTDTVV+K S  +
Sbjct: 175 NGHSNGNFLVAKDTNLSRDVNGRHNGSPNVGAFDVHKLQKLRTKGGKKTDTVVAKASKAE 234

Query: 240 PKKKITKKNRVWDDSP-PESKLDFTDPAGGNGS-NIE-VEAADHGESMMDK----EEVFS 292
           P KK+TKKNRVWD++   E+KLDFTD +G +G  NI+ V AAD GESMMDK         
Sbjct: 235 PNKKVTKKNRVWDEAATTETKLDFTDHSGEDGERNIDFVVAADQGESMMDKEEIVSSESE 294

Query: 293 SDSESEEDEEVGKHNKPDAKKTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNV 351
            + E E++E+ GK+ KPDAK  GWFSSMFQSIAGKANL+K+DLEPALKALKDRLMTKNV
Sbjct: 295 QEEEDEDEEDAGKNRKPDAKSKGWFSSMFQSIAGKANLEKSDLEPALKALKDRLMTKNV 353

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357480047|ref|XP_003610309.1| Signal recognition particle receptor subunit alpha [Medicago truncatula] gi|355511364|gb|AES92506.1| Signal recognition particle receptor subunit alpha [Medicago truncatula]

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 232/376 (61%), Positives = 275/376 (73%), Gaps = 40/376 (10%)

Query: 1   MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLK 60
           MLEQLLIFTRGGLILW+C E+GNALKGSPIDTLIRSCLLEERSG +S+NYD+ GAAY+LK
Sbjct: 1   MLEQLLIFTRGGLILWSCNEIGNALKGSPIDTLIRSCLLEERSGASSYNYDAPGAAYSLK 60

Query: 61  WTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIYDPKRTDYSDFDEMFRQLRKEA 120
           WTFHN+LGLVFVAVYQRILHLLYVDDLLA +K+ FS++YDP RT Y DFDE+F+QL+ EA
Sbjct: 61  WTFHNDLGLVFVAVYQRILHLLYVDDLLAAVKREFSQVYDPTRTVYRDFDEIFKQLKIEA 120

Query: 121 EARAEELKKSKQVTKPMNNLKKQGGQLQKGGFERGSNRSGGGSANDDGD-------SDNM 173
           EARAE+LKKS  V    N  +KQ    +  G +   N S GG   +DGD       S+N 
Sbjct: 121 EARAEDLKKSNPVIVGGN--RKQQVTWKGDGSDGKKNGSAGGGLKNDGDGKNGKKNSEND 178

Query: 174 RGRKLENGH-----SN--VGNVEIEESRVTGVANGKENTSSNIGAFDVSKLQ-KLRNKG- 224
           R   + NG+     SN  VGNV +         NGKEN S N GAFDV++LQ K+RNKG 
Sbjct: 179 RSAIVNNGNGYNLRSNGVVGNVSV---------NGKENDSVNNGAFDVNRLQKKVRNKGG 229

Query: 225 -GKKTDTVVSKGSNPDPKKKITKKNRVWDDSPPESKLDFTDPAGGNGS-----NIEVEAA 278
            GKKTD VV+K    +P KK+ KKNRVWD+ P E+KLDFTD    +G       ++  A 
Sbjct: 230 NGKKTDAVVTKA---EP-KKVVKKNRVWDEKPVETKLDFTDHVDIDGDADKDRKVDYLAK 285

Query: 279 DHGESMMDKEEVF---SSDSESEEDEEVGKHNKPDAKKTGWFSSMFQSIAGKANLDKADL 335
           + GESMMDK+E+F   S D E ++D+  GK +KPDAKK GWFSSMFQSIAGKANL+K+DL
Sbjct: 286 EQGESMMDKDEIFSSDSEDEEDDDDDNAGKKSKPDAKKKGWFSSMFQSIAGKANLEKSDL 345

Query: 336 EPALKALKDRLMTKNV 351
           EPALKALKDRLMTKNV
Sbjct: 346 EPALKALKDRLMTKNV 361

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562565|ref|XP_003549540.1| PREDICTED: signal recognition particle receptor subunit alpha-like [Glycine max]

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 217/364 (59%), Positives = 258/364 (70%), Gaps = 21/364 (5%)

Query: 1   MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLK 60
           MLEQLLIFTRGGLILWTC  L NAL+GSPIDTLIRSCLLEERSG ASFNYD+ GAAY+LK
Sbjct: 1   MLEQLLIFTRGGLILWTCNHLSNALRGSPIDTLIRSCLLEERSGAASFNYDAPGAAYSLK 60

Query: 61  WTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIYDPKRTDYSDFDEMFRQLRKEA 120
           WTFHN+LGLVFVAVYQR+LHLLYVDDLLA +K+ FS +Y P++T Y DFDE+F+QL+ EA
Sbjct: 61  WTFHNDLGLVFVAVYQRVLHLLYVDDLLAAVKREFSRLYHPQKTAYRDFDEIFQQLQIEA 120

Query: 121 EARAEELKKSKQVTKPMNNLKKQGGQLQKGGFERGSNRSGGGSANDDGDSDNMRGRKLEN 180
           E+R+E  KK   V     N +KQ G  Q  G   G N   G     DGD    +GRKLEN
Sbjct: 121 ESRSENFKKPNPVPALAPN-RKQNGTWQGQGL--GQN--AGSEKKSDGDGK--KGRKLEN 173

Query: 181 GHSNVGNVEIEESRV-----TGVAN--GKENTSSNIGAFDVSKLQKL----RNKGGKKTD 229
            + +V N     +       + V N  GKEN SSN+GAFDV++LQKL     N  GKK D
Sbjct: 174 DNFSVANSNSNANVNHSGGKSSVNNNIGKENESSNVGAFDVNRLQKLKGKKGNGNGKKKD 233

Query: 230 TVVSKGSNPDPKKKITKKNRVWDDSPPESKLDFTDPAGGNGS-NIEVEAADHGESMMDKE 288
            +V   +  +P KK+ K NRVWD   P++KLDFTD   G+G  + +  A + GESMMDKE
Sbjct: 234 ALVVAAAKGEP-KKVDKPNRVWDQPAPQTKLDFTDHVDGDGDRSADFLAKEQGESMMDKE 292

Query: 289 EVF-SSDSESEEDEEVGKHNKPDAKKTGWFSSMFQSIAGKANLDKADLEPALKALKDRLM 347
           E+  S     ++D++ GK N P AKK GWFSSMFQSIAGKANL+K+DLEPALKALKDRLM
Sbjct: 293 EILSSDSEVEDDDDDTGKDNMPVAKKKGWFSSMFQSIAGKANLEKSDLEPALKALKDRLM 352

Query: 348 TKNV 351
           TKNV
Sbjct: 353 TKNV 356

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	354
TAIR|locus:2118701	634	AT4G30600 [Arabidopsis thalian	0.985	0.550	0.584	6.4e-99
DICTYBASE|DDB_G0277377	615	srpR "signal recognition parti	0.290	0.167	0.482	1.2e-27
FB|FBgn0010391	614	Gtp-bp "GTP-binding protein" [	0.313	0.180	0.396	1.2e-21
UNIPROTKB|F1NXV4	644	SRPR "Uncharacterized protein"	0.268	0.147	0.415	2.3e-19
MGI|MGI:1914648	636	Srpr "signal recognition parti	0.265	0.147	0.414	4.9e-19
RGD|1311504	636	Srpr "signal recognition parti	0.265	0.147	0.414	3.4e-18
UNIPROTKB|F1MNJ2	598	SRPR "Signal recognition parti	0.265	0.157	0.414	3.9e-17
UNIPROTKB|Q3MHE8	639	SRPR "Signal recognition parti	0.265	0.147	0.414	4.8e-17
UNIPROTKB|F1S754	638	SRPR "Uncharacterized protein"	0.265	0.147	0.414	4.1e-16
UNIPROTKB|P06625	638	SRPR "Signal recognition parti	0.265	0.147	0.414	5.2e-16

TAIR|locus:2118701 AT4G30600 [Arabidopsis thaliana (taxid:3702)]

 Score = 982 (350.7 bits), Expect = 6.4e-99, P = 6.4e-99
 Identities = 214/366 (58%), Positives = 248/366 (67%)

Query:     1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLK 60
             MLEQLLIFTRGGLILWTCKE+GNALKGSPIDTLIRSCLLEERSG  SFNYD+ GAAYTLK
Sbjct:     1 MLEQLLIFTRGGLILWTCKEIGNALKGSPIDTLIRSCLLEERSGAVSFNYDAPGAAYTLK 60

Query:    61 WTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIYDPKRTDYSDFDEMFRQXXXXX 120
             WTFHN+LGLVFVAVYQRILHLLYVDDLL+M+KQSFSE+YDPKR  Y DFDE FRQ     
Sbjct:    61 WTFHNDLGLVFVAVYQRILHLLYVDDLLSMVKQSFSEVYDPKRMAYDDFDETFRQLRIEA 120

Query:   121 XXXXXXXXXSKQVTKPMNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMRGR--KL 178
                      +KQV KP+ +                                  + +   L
Sbjct:   121 EARAEELRKTKQVGKPVTSVKKQGQVSKPGLEGGNKRVSSEGGSKKDDGDGGNKAKVSTL 180

Query:   179 ENGHSNVGNVEIEE-SRVTG-VANGKENTSSNIGAFDVSKLQKLRNKG--GK----KTDT 230
              NGHSN GN ++E+ S+ T  +ANGKENTSSN+ A D+SKLQKLR+KG  G+    KTD+
Sbjct:   181 TNGHSN-GNHQMEDDSQETNDLANGKENTSSNV-AVDLSKLQKLRSKGVRGRGGVRKTDS 238

Query:   231 VVSKGSN-PDPKKKITKKNRVWDDSPP-ESKLDFTDPAGGNGSN--IEVEAADHGESMMD 286
             + +K S   +P KK TKKNRVWDD+ P +SKLDFTD    NG+N  +++ AAD GESMMD
Sbjct:   239 IGNKSSKVAEPAKKATKKNRVWDDAAPKQSKLDFTDSIDENGNNDHVDIVAADQGESMMD 298

Query:   287 KXXXXXXXXXXXXXXXXGKHNKP-DAKKTGWFSSMFQSIAGKANLDKADLEPALKALKDR 345
             K                G   KP  AKK GWFSS+FQSI GKANL++ DL PALKALK+R
Sbjct:   299 KEEVFSSDSESEDDDEPGSDEKPAQAKKKGWFSSVFQSITGKANLERTDLGPALKALKER 358

Query:   346 LMTKNV 351
             LMTKNV
Sbjct:   359 LMTKNV 364

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0005047 "signal recognition particle binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=ISS

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0006605 "protein targeting" evidence=ISS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

DICTYBASE|DDB_G0277377 srpR "signal recognition particle receptor alpha subunit" [Dictyostelium discoideum (taxid:44689)]

 Score = 249 (92.7 bits), Expect = 1.2e-27, Sum P(2) = 1.2e-27
 Identities = 54/112 (48%), Positives = 74/112 (66%)

Query:     1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLK 60
             ML+   I T+GG++LW+ KE    +KGSPI++LI+  LLEERS   SF  DS    Y+LK
Sbjct:     1 MLDSFTILTKGGIVLWS-KEFAK-IKGSPINSLIKKVLLEERSAETSFQIDS----YSLK 54

Query:    61 WTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIYDP---KRTDYSDF 109
             WTF NE  L+FV VYQ+I  LLY+++LL  +K+ F ++Y     K  + SDF
Sbjct:    55 WTFSNEFDLIFVVVYQKIFTLLYIEELLTTVKKRFIKMYKDLLLKLKESSDF 106

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0005785 "signal recognition particle receptor complex" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005047 "signal recognition particle binding" evidence=IEA;ISS

GO:0003924 "GTPase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0045047 "protein targeting to ER" evidence=ISS

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

FB|FBgn0010391 Gtp-bp "GTP-binding protein" [Drosophila melanogaster (taxid:7227)]

 Score = 193 (73.0 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
 Identities = 46/116 (39%), Positives = 71/116 (61%)

Query:     1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLK 60
             ML+ ++IFT+GG++LW     GN+   S I++LIR  +LEER+  A + Y+    A   K
Sbjct:     1 MLDFVVIFTKGGVVLWHSNASGNSF-ASCINSLIRGVILEERNTEAKY-YEEDHLAVQFK 58

Query:    61 WTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIY-DPKRTDYSDFDEMFRQ 115
                 NEL LV+ A++Q+++ L Y+D  LA M+ +F E Y D +  D  DFD  +R+
Sbjct:    59 --LDNELDLVYAAIFQKVIKLNYLDGFLADMQAAFKEKYGDIRLGDDYDFDREYRR 112

GO:0003729 "mRNA binding" evidence=NAS

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0007409 "axonogenesis" evidence=IEP

GO:0050708 "regulation of protein secretion" evidence=IEP

GO:0005785 "signal recognition particle receptor complex" evidence=ISS

GO:0005047 "signal recognition particle binding" evidence=ISS

GO:0005525 "GTP binding" evidence=IEA;NAS

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

UNIPROTKB|F1NXV4 SRPR "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 172 (65.6 bits), Expect = 2.3e-19, Sum P(2) = 2.3e-19
 Identities = 42/101 (41%), Positives = 62/101 (61%)

Query:     1 MLEQLLIFTRGGLILWTCKEL-GNALKGS-PIDTLIRSCLLEERSGLASFNYDSAGAAYT 58
             ML+   IF++GGL+LW  + + G A   + P++ LIRS LL+ER G  SF ++    A T
Sbjct:     1 MLDFFTIFSKGGLVLWCFQGVRGPASAATAPVNALIRSVLLQERGGNNSFTHE----ALT 56

Query:    59 LKWTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIY 99
             LK+   N+  LVFV  +Q+IL L YVD L+  + + F + Y
Sbjct:    57 LKYKLDNQFELVFVVGFQKILTLTYVDKLIDDVHKEFRDKY 97

GO:0003924 "GTPase activity" evidence=IEA

GO:0005047 "signal recognition particle binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005785 "signal recognition particle receptor complex" evidence=IEA

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

MGI|MGI:1914648 Srpr "signal recognition particle receptor ('docking protein')" [Mus musculus (taxid:10090)]

 Score = 179 (68.1 bits), Expect = 4.9e-19, Sum P(2) = 4.9e-19
 Identities = 41/99 (41%), Positives = 62/99 (62%)

Query:     1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLK 60
             ML+   IF++GGL+LW  + + ++  G P++ LIRS LL+ER G  SF ++    A TLK
Sbjct:     1 MLDFFTIFSKGGLVLWCFQGVSDSCTG-PVNALIRSVLLQERGGNNSFTHE----ALTLK 55

Query:    61 WTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIY 99
             +   N+  LVFV  +Q+IL L YVD L+  + + F + Y
Sbjct:    56 YKLDNQFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKY 94

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0005047 "signal recognition particle binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005785 "signal recognition particle receptor complex" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

RGD|1311504 Srpr "signal recognition particle receptor ('docking protein')" [Rattus norvegicus (taxid:10116)]

 Score = 179 (68.1 bits), Expect = 3.4e-18, Sum P(2) = 3.4e-18
 Identities = 41/99 (41%), Positives = 62/99 (62%)

Query:     1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLK 60
             ML+   IF++GGL+LW  + + ++  G P++ LIRS LL+ER G  SF ++    A TLK
Sbjct:     1 MLDFFTIFSKGGLVLWCFQGVSDSCTG-PVNALIRSVLLQERGGNNSFTHE----ALTLK 55

Query:    61 WTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIY 99
             +   N+  LVFV  +Q+IL L YVD L+  + + F + Y
Sbjct:    56 YKLDNQFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKY 94

GO:0003924 "GTPase activity" evidence=IEA

GO:0005047 "signal recognition particle binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005785 "signal recognition particle receptor complex" evidence=IEA

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

UNIPROTKB|F1MNJ2 SRPR "Signal recognition particle receptor subunit alpha" [Bos taurus (taxid:9913)]

 Score = 179 (68.1 bits), Expect = 3.9e-17, Sum P(2) = 3.9e-17
 Identities = 41/99 (41%), Positives = 62/99 (62%)

Query:     1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLK 60
             ML+   IF++GGL+LW  + + ++  G P++ LIRS LL+ER G  SF ++    A TLK
Sbjct:     1 MLDFFTIFSKGGLVLWCFQGVSDSCTG-PVNALIRSVLLQERGGNNSFTHE----ALTLK 55

Query:    61 WTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIY 99
             +   N+  LVFV  +Q+IL L YVD L+  + + F + Y
Sbjct:    56 YKLDNQFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKY 94

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0005785 "signal recognition particle receptor complex" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005047 "signal recognition particle binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

UNIPROTKB|Q3MHE8 SRPR "Signal recognition particle receptor subunit alpha" [Bos taurus (taxid:9913)]

 Score = 179 (68.1 bits), Expect = 4.8e-17, Sum P(2) = 4.8e-17
 Identities = 41/99 (41%), Positives = 62/99 (62%)

Query:     1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLK 60
             ML+   IF++GGL+LW  + + ++  G P++ LIRS LL+ER G  SF ++    A TLK
Sbjct:     1 MLDFFTIFSKGGLVLWCFQGVSDSCTG-PVNALIRSVLLQERGGNNSFTHE----ALTLK 55

Query:    61 WTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIY 99
             +   N+  LVFV  +Q+IL L YVD L+  + + F + Y
Sbjct:    56 YKLDNQFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKY 94

GO:0005525 "GTP binding" evidence=IEA

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0005785 "signal recognition particle receptor complex" evidence=IEA

GO:0005047 "signal recognition particle binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

UNIPROTKB|F1S754 SRPR "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 179 (68.1 bits), Expect = 4.1e-16, Sum P(2) = 4.1e-16
 Identities = 41/99 (41%), Positives = 62/99 (62%)

Query:     1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLK 60
             ML+   IF++GGL+LW  + + ++  G P++ LIRS LL+ER G  SF ++    A TLK
Sbjct:     1 MLDFFTIFSKGGLVLWCFQGVSDSCTG-PVNALIRSVLLQERGGNNSFTHE----ALTLK 55

Query:    61 WTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIY 99
             +   N+  LVFV  +Q+IL L YVD L+  + + F + Y
Sbjct:    56 YKLDNQFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKY 94

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0005785 "signal recognition particle receptor complex" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005047 "signal recognition particle binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

UNIPROTKB|P06625 SRPR "Signal recognition particle receptor subunit alpha" [Canis lupus familiaris (taxid:9615)]

 Score = 179 (68.1 bits), Expect = 5.2e-16, Sum P(2) = 5.2e-16
 Identities = 41/99 (41%), Positives = 62/99 (62%)

Query:     1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLK 60
             ML+   IF++GGL+LW  + + ++  G P++ LIRS LL+ER G  SF ++    A TLK
Sbjct:     1 MLDFFTIFSKGGLVLWCFQGVSDSCTG-PVNALIRSVLLQERGGNNSFTHE----ALTLK 55

Query:    61 WTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIY 99
             +   N+  LVFV  +Q+IL L YVD L+  + + F + Y
Sbjct:    56 YKLDNQFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKY 94

GO:0005789 "endoplasmic reticulum membrane" evidence=TAS

GO:0005525 "GTP binding" evidence=IEA

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0005785 "signal recognition particle receptor complex" evidence=IEA

GO:0005047 "signal recognition particle binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	354
pfam04086	272	pfam04086, SRP-alpha_N, Signal recognition particl	2e-53

>gnl|CDD|217884 pfam04086, SRP-alpha_N, Signal recognition particle, alpha subunit, N-terminal

 Score =  177 bits (450), Expect = 2e-53
 Identities = 76/289 (26%), Positives = 106/289 (36%), Gaps = 32/289 (11%)

Query: 27  GSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLKWTFHNELGLVFVAVYQRILHLLYVDD 86
            SP+++LIR   LEERSG  SF  DS    YTLKW   NE GLVFV VYQ+ILHL Y+D 
Sbjct: 1   TSPVNSLIRDVFLEERSGNPSFKKDS----YTLKWKLDNEFGLVFVVVYQKILHLSYIDK 56

Query: 87  LLAMMKQSFSEIYDPKRTDYS-------DFDEMFRQLRKEAEARAEELKKSKQVTKPMNN 139
           LL  ++  F ++Y  +            +FDE F Q  +E E  +++  KS +  +    
Sbjct: 57  LLDDVRTIFRDLYKNQLRQEKARTTYDEEFDEYFDQQLRELEKESKKQAKSPKAMRTFEE 116

Query: 140 LKKQGGQLQKGGFERGSNRSGGGSANDDGDSDNMRGRKLENGHSNVGNVEIEESRVTGVA 199
            KK      K   +    R               +        S              + 
Sbjct: 117 SKK-----SKKTVDSMIERKPKEPGLKRKQRKKAQESATSPESSPSSTPNSSRPSTPHLL 171

Query: 200 NGKENTSSNIGAFDVSKLQKLRNKGGKKTDTVVSKGSNPDPKKKITKKNRVWDDSPPE-- 257
             KE  S         K  KL +      +      + P   KK  KK R WD    E  
Sbjct: 172 KAKEGPS-----RRAKKAAKLSSTASSGDEKSPKSKAAP---KKAGKKMRKWDLDGDEDD 223

Query: 258 -SKLDFTDPA-----GGNGSNIEVEAADHGESMMDKEEVFSSDSESEED 300
            + LD++ P           ++E    +       K +    D   E  
Sbjct: 224 DAVLDYSAPDANDENADAPEDVEEVDQESWGRGTMKGDFVLLDLGDEVH 272

SRP is a complex of six distinct polypeptides and a 7S RNA that is essential for transferring nascent polypeptide chains that are destined for export from the cell to the translocation apparatus of the endoplasmic reticulum (ER) membrane. SRP binds hydrophobic signal sequences as they emerge from the ribosome, and arrests translation. Length = 272

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	354
KOG0781	587	consensus Signal recognition particle receptor, al	100.0
PF04086	279	SRP-alpha_N: Signal recognition particle, alpha su	100.0
PF09201	148	SRX: SRX; InterPro: IPR015284 The signal recogniti	99.51
KOG0859	217	consensus Synaptobrevin/VAMP-like protein [Intrace	95.57
PF02881	75	SRP54_N: SRP54-type protein, helical bundle domain	94.98
PF01217	141	Clat_adaptor_s: Clathrin adaptor complex small cha	92.62
PF13774	83	Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3	86.94

>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.3e-55  Score=436.62  Aligned_cols=305  Identities=34%  Similarity=0.539  Sum_probs=199.0

Q ss_pred             CcceEEEecCCcEEEeeecccCCCCCCCchHHHHHHhHhccccCCcceeeecCCCceEEEEEEecCCceEEeehhhHhhh
Q 018522            1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLKWTFHNELGLVFVAVYQRILH   80 (354)
Q Consensus         1 MiD~f~IftkgG~VLW~~~~~~~~~~~~~iN~lI~~vlleer~~~~~~~~~~~~d~y~lkw~~~ne~~LvfVvvyq~il~   80 (354)
                      |||+|+||||||+|||+|++.+..+.+ |||+||++||||||++..+|.+    +.|||+|.++|+|+|||||+||+|++
T Consensus         1 Mld~faIFtkgG~vLw~~~~~~~~~~~-~in~lI~~~ll~er~~~~~~~~----~~yTlk~q~~N~~~lvfvvvfqki~~   75 (587)
T KOG0781|consen    1 MLDQFAIFTKGGLVLWCYQEVGDNLKG-PINALIRSVLLSERGGVNSFTF----EAYTLKYQLDNQYSLVFVVVFQKILT   75 (587)
T ss_pred             CcceeeeecCCcEEEEEecccchhccc-hHHHHHHHHHHHhhcCcccCch----hheeEeeeecCCccEEEEEEEeccch
Confidence            999999999999999999999888888 9999999999999999999999    99999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHhcCCcCC--CCcchHHHHHHHHHHHHHHHHHh---hhccccccccccccccCCCccCCCCCCC
Q 018522           81 LLYVDDLLAMMKQSFSEIYDPKRT--DYSDFDEMFRQLRKEAEARAEEL---KKSKQVTKPMNNLKKQGGQLQKGGFERG  155 (354)
Q Consensus        81 l~yvd~LL~~v~~~F~~~y~~~~~--~~~~Fd~~F~~~l~e~e~~s~~~---~~~~~~~~~~~~s~k~~~~~~~~~~~~k  155 (354)
                      |.|+|+||++++..|+..|.+...  .+-+|++.|..+|+......+..   .+.+..++.+++.++..          .
T Consensus        76 L~yv~~ll~~v~~~f~e~~~~~~~~~l~~n~~~~~~e~lk~rq~~ne~t~~k~~~pi~~~~~~~~~K~~----------~  145 (587)
T KOG0781|consen   76 LTYVDKLLNDVLNLFREKYDTQSALSLLNNTFDFQEELLKLRQVANEATEYKIRAPITMKKSEDLEKAK----------D  145 (587)
T ss_pred             hhhHHHHHHHHHHHHHHHhccchHHHhhhhhHHHHHHHHHHhhcccccchhhhcccchhhhhhcchhhh----------h
Confidence            999999999999999999987542  45567777888877655433221   11222333444444333          2


Q ss_pred             CCCCCCCCCCCCCCCCCcccccccCCCCCCCCccccccccccccCCCCCCCCcchhhhhHHHHHhhcCCCCCcccccCCC
Q 018522          156 SNRSGGGSANDDGDSDNMRGRKLENGHSNVGNVEIEESRVTGVANGKENTSSNIGAFDVSKLQKLRNKGGKKTDTVVSKG  235 (354)
Q Consensus       156 ~~~s~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~k~~~k~~~~~~~~~~~~  235 (354)
                      .+.++.+..++...++.      .+..+++            ...+.     +.     ..++++-+..+++.   ...+
T Consensus       146 ~v~~~~e~~~d~s~kk~------~nt~kng------------~~~~~-----h~-----~~~kk~~~~tkkKg---~~s~  194 (587)
T KOG0781|consen  146 PVRSPIETNGDKSAKKK------KNTKKNG------------AKKEG-----HD-----EEFKKKHRETKKKG---NKST  194 (587)
T ss_pred             hhccccccccccchhcc------cccccCC------------Ccccc-----hh-----hhhhhhhccccccc---ccCC
Confidence            23344444433332210      0111222            00110     01     11222212111111   0122


Q ss_pred             CCCCCcccccccCCcCCCCC--CCCCcccCCCCCCCCCCc-cchhcccCCCcccccccc---CCCCcchhhhhhcCCCCC
Q 018522          236 SNPDPKKKITKKNRVWDDSP--PESKLDFTDPAGGNGSNI-EVEAADHGESMMDKEEVF---SSDSESEEDEEVGKHNKP  309 (354)
Q Consensus       236 ~~~~~~kK~~Kk~RvWd~~~--~~~~LDyS~~~~~~~~~~-~~~~~~~g~g~~d~~d~~---~s~~e~~~~~~~~~~~~~  309 (354)
                      +.+.|++|..|++|+||+.+  +.+.||||++..++..+. ..+...+++++.+-.+..   .++++++++ +...+...
T Consensus       195 ~~~~p~kKGkk~~RvWdd~g~~d~~~ld~sss~sn~e~a~~e~vn~~~~~s~~~~~~~l~~~~~d~~~s~~-~~~~~~~~  273 (587)
T KOG0781|consen  195 KVDAPKKKGKKAPRVWDDAGCEDEKVLDYSSSTSNGENALSETVNLDQGESMGGQLQDLDKDSSDDEGSAD-NSTDPAAT  273 (587)
T ss_pred             CCCCchhhcccccchhhhccchhhcccccCCccccccchhHHHhhhhhhcccccccccccccccccccccc-cccchhhh
Confidence            33344445555599999865  788999998887443111 113333444443321111   111111111 11122233


Q ss_pred             CCcccchhHHhhhhhccCcccchhchHHHHHHHHHHhhhccccC
Q 018522          310 DAKKTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVVC  353 (354)
Q Consensus       310 ~~~~~G~fssmFk~lvG~K~LT~eDLePvL~kMkdhLi~KNVA~  353 (354)
                      .+..+|||| ||++|||+|+|.++||.|+|++|++|||+||||+
T Consensus       274 ~k~~g~aFg-~fkglvG~K~L~eeDL~pvL~kM~ehLitKNVA~  316 (587)
T KOG0781|consen  274 KKTVGGAFG-LFKGLVGSKSLSEEDLNPVLDKMTEHLITKNVAA  316 (587)
T ss_pred             hcchhhHHH-HHHhhcccccccHhhhHHHHHHHHHHHHhhhhhH
Confidence            444567787 9999999999999999999999999999999995

>PF04086 SRP-alpha_N: Signal recognition particle, alpha subunit, N-terminal; InterPro: IPR007222 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=100.00  E-value=2.6e-43  Score=337.07  Aligned_cols=114  Identities=54%  Similarity=0.848  Sum_probs=71.3

Q ss_pred             CCchHHHHHHhHhccccCCcceeeecCCCceEEEEEEecCCceEEeehhhHhhhhhhHHHHHHHHHHHHHHhcCCcCC--
Q 018522           27 GSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLKWTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIYDPKRT--  104 (354)
Q Consensus        27 ~~~iN~lI~~vlleer~~~~~~~~~~~~d~y~lkw~~~ne~~LvfVvvyq~il~l~yvd~LL~~v~~~F~~~y~~~~~--  104 (354)
                      ++|||+||++||||||+++.+|+|    |+|+|+|+|+|+|+||||||||+||||+|||+||++|+++|+++|.+.+.  
T Consensus         1 ~~~in~LI~~vlleeR~~~~~~~~----d~y~lkw~~~Ne~~LvfVvvYq~il~l~yvd~LL~~v~~~F~~~y~~~l~~~   76 (279)
T PF04086_consen    1 TSPINALIRDVLLEERSGNSSFTY----DNYTLKWTLDNELGLVFVVVYQKILQLTYVDKLLDDVKKEFVKLYKNQLKQL   76 (279)
T ss_dssp             --HHHHHHHHTGGG-----------------EEEEEEETTTTEEEEEEES-GGGHHHHHHHHHHHHHHHHHHTHHHHHSS
T ss_pred             CchHHHHHHHhheeeccCCCceeE----cCEEEEEEEeccCCEEEeeeecccccchHHHHHHHHHHHHHHHHHhHHhhcc
Confidence            479999999999999999999999    99999999999999999999999999999999999999999999988631  


Q ss_pred             -------CCcchHHHHHHHHHHHHHHHHHhhhccccccccccccccC
Q 018522          105 -------DYSDFDEMFRQLRKEAEARAEELKKSKQVTKPMNNLKKQG  144 (354)
Q Consensus       105 -------~~~~Fd~~F~~~l~e~e~~s~~~~~~~~~~~~~~~s~k~~  144 (354)
                             .|++||++|+++|+++|+++...++.+..|++|+++.+++
T Consensus        77 ~~~~~~~~~~~Fd~~F~~~l~~~e~~~~~~~~~~~~~~~~~~s~k~~  123 (279)
T PF04086_consen   77 KPNTSINEYFDFDEEFDQLLKELEARSKSQKRSPKAMRSFEESKKSK  123 (279)
T ss_dssp             STHHHHT-----HHHHHHHHHHHCCCTT-------------------
T ss_pred             ccccccccchhHHHHHHHHHHHHHHHhcccccccccccccccccccc
Confidence                   4778999999999999999887666667899998887655

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents the alpha subunit of the SR receptor.; GO: 0003924 GTPase activity, 0005047 signal recognition particle binding, 0005525 GTP binding, 0006184 GTP catabolic process, 0006886 intracellular protein transport, 0005785 signal recognition particle receptor complex; PDB: 2FH5_A 2GO5_1.

>PF09201 SRX: SRX; InterPro: IPR015284 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.51  E-value=4.2e-14  Score=121.60  Aligned_cols=96  Identities=19%  Similarity=0.349  Sum_probs=59.8

Q ss_pred             CcceEEEecCCcEEEeeecccCCCCCCCchHHHHHHhHhccccCC---cceeee------cCCCceEEEEEEecCCceEE
Q 018522            1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGL---ASFNYD------SAGAAYTLKWTFHNELGLVF   71 (354)
Q Consensus         1 MiD~f~IftkgG~VLW~~~~~~~~~~~~~iN~lI~~vlleer~~~---~~~~~~------~~~d~y~lkw~~~ne~~Lvf   71 (354)
                      |||||+|||++|.||++|+|.++++.+.+||++|++.|.++-+..   ..|.+.      ++.++++.+|+..++++|+|
T Consensus         1 MfdQlaIFTpqGqvLyqyN~~gKKFsE~QiN~FIs~lItsP~~~~e~~~~~k~~~i~s~~~~~~~f~~mfh~sKQPeLy~   80 (148)
T PF09201_consen    1 MFDQLAIFTPQGQVLYQYNCLGKKFSETQINAFISHLITSPVTKKEDSSKSKFLTISSEKKNSRSFSAMFHISKQPELYY   80 (148)
T ss_dssp             ---EEEEE-TT-BEEEEEETTS----HHHHHHHHHHHHHS---GGGTT--EEEEE-----------EEEEEEETTTTEEE
T ss_pred             CcceeEEeccCceEEEEecccchHHHHHHHHHHHHHHhcCCCcccCCCcceeeEEecccccCCCChheeeeecCCCcEEE
Confidence            999999999999999999999999999999999999999986432   234333      56789999999999999999


Q ss_pred             eehhhH-hhhhh-hHHHHHHHHHHHHH
Q 018522           72 VAVYQR-ILHLL-YVDDLLAMMKQSFS   96 (354)
Q Consensus        72 Vvvyq~-il~l~-yvd~LL~~v~~~F~   96 (354)
                      ||.|.. -|+|. =..+-|+..-.++-
T Consensus        81 VvTyaeqsleLn~EAe~~L~lal~LWd  107 (148)
T PF09201_consen   81 VVTYAEQSLELNQEAEQTLDLALKLWD  107 (148)
T ss_dssp             EEEESS--HHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeccccchhhHHHHHHHHHHHHHHh
Confidence            999954 22232 34455555555543

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents a homologue of the alpha subunit of the SR receptor. Members of this entry consist of a central six-stranded anti-parallel beta-sheet sandwiched by helix alpha1 on one side and helices alpha2-alpha4 on the other. They interact with the small GTPase SR-beta, forming a complex that matches a class of small G protein-effector complexes, including Rap-Raf, Ras-PI3K(gamma), Ras-RalGDS, and Arl2-PDE(delta) []. ; PDB: 1NRJ_A.

>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.57  E-value=0.11  Score=48.23  Aligned_cols=103  Identities=19%  Similarity=0.310  Sum_probs=65.8

Q ss_pred             eEEEecCCcEEEeeecccCCCCCCCchHHHHHHhHhccccCC----cceeeecCCCceEEEEEEecCCceEEeehhhHhh
Q 018522            4 QLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGL----ASFNYDSAGAAYTLKWTFHNELGLVFVAVYQRIL   79 (354)
Q Consensus         4 ~f~IftkgG~VLW~~~~~~~~~~~~~iN~lI~~vlleer~~~----~~~~~~~~~d~y~lkw~~~ne~~LvfVvvyq~il   79 (354)
                      .++++.+|-+||=.++... ..+.+     |-..+||.-.++    -+|.+    |+|+++|...|.|-...|+.=----
T Consensus         4 iYs~VARGTvvLaeft~~~-gNf~s-----va~qiL~klp~~~n~k~tYs~----d~y~Fh~l~~dg~tylcvadds~gR   73 (217)
T KOG0859|consen    4 IYSFVARGTVILAEFTEFS-GNFSS-----IAAQILQKLPSSSNSKFTYSC----DGYTFHYLVEDGLTYLCVADDSAGR   73 (217)
T ss_pred             eEEEEecceEEEEeeeecc-CCHHH-----HHHHHHHhCCCCCCCceEEec----CCeEEEEEEeCCeEEEEEEeccccc
Confidence            4677889888886544331 22222     333344443222    26888    9999999999987544444322222


Q ss_pred             hhhhHHHHHHHHHHHHHHhcCCcCC---CCcchHHHHHHHHHH
Q 018522           80 HLLYVDDLLAMMKQSFSEIYDPKRT---DYSDFDEMFRQLRKE  119 (354)
Q Consensus        80 ~l~yvd~LL~~v~~~F~~~y~~~~~---~~~~Fd~~F~~~l~e  119 (354)
                      +.++  .||++||..|.+.|+-...   .| ..++.|-++|++
T Consensus        74 ~ipf--aFLe~Ik~~F~k~YG~~a~ta~Ay-smN~EFs~vL~q  113 (217)
T KOG0859|consen   74 QIPF--AFLERIKEDFKKRYGGGAHTAVAY-SMNKEFSSVLKQ  113 (217)
T ss_pred             cccH--HHHHHHHHHHHHHhccchhHHHHh-HhHHHHHHHHHH
Confidence            3333  4899999999999987643   35 577788887754

>PF02881 SRP54_N: SRP54-type protein, helical bundle domain; InterPro: IPR013822 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=94.98  E-value=0.029  Score=43.23  Aligned_cols=37  Identities=27%  Similarity=0.477  Sum_probs=34.0

Q ss_pred             hHHhhhhhccCcccchhchHHHHHHHHHHhhhccccC
Q 018522          317 FSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVVC  353 (354)
Q Consensus       317 fssmFk~lvG~K~LT~eDLePvL~kMkdhLi~KNVA~  353 (354)
                      |++.+++++|+..+++.+++++|+.|++.||..+|+.
T Consensus         5 l~kt~~~l~~~~~~~~~~i~~~l~ele~~Li~aDVg~   41 (75)
T PF02881_consen    5 LSKTFKKLSGSIFLTEKDIEEFLEELEEALIEADVGV   41 (75)
T ss_dssp             HHHHHHHHHCCSSCTHHHHHHHHHHHHHHHHHTTTSH
T ss_pred             HHHHHHHHhCcccccHHhHHHHHHHHHHHHHHcCcCH
Confidence            5668999999988999999999999999999999973

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 1J8M_F 1J8Y_F 2J37_W 2OG2_A 3B9Q_A 2V3C_C 3NDB_B 1ZU5_B 1ZU4_A 1WGW_A ....

>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=92.62  E-value=1.1  Score=38.69  Aligned_cols=87  Identities=18%  Similarity=0.320  Sum_probs=57.7

Q ss_pred             CcceEEEecCCcEEEeeecccCCCCCCCchHHHHHHhH--hcccc--CCcceeeecCCCceEEEEEEecCCceEEeeh--
Q 018522            1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCL--LEERS--GLASFNYDSAGAAYTLKWTFHNELGLVFVAV--   74 (354)
Q Consensus         1 MiD~f~IftkgG~VLW~~~~~~~~~~~~~iN~lI~~vl--leer~--~~~~~~~~~~~d~y~lkw~~~ne~~LvfVvv--   74 (354)
                      ||..+.|++..|-+|.++.+.  .....-...+++.+.  +..|.  ....+.+    +++.+=|+..++  |+|+++  
T Consensus         1 MI~~i~i~n~~G~~i~~k~y~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~----~~~~~vy~~~~d--l~~~~v~~   72 (141)
T PF01217_consen    1 MIKAILILNSQGKRILSKYYR--DVSEEERQKLFEKFIKKKSSRNSKQSPIFEH----DNYRIVYKRYSD--LYFVVVGD   72 (141)
T ss_dssp             SEEEEEEEETTSEEEEEEESS--TSTSHHHHHHHHHHHHHHHTSSSSSTSEEEE----TTEEEEEEEETT--EEEEEEES
T ss_pred             CEEEEEEEcCCCCEEEehhcC--CccHHHHHHHHHHHHHHHHhcccccceeeec----ccceeeeEeecc--EEEEEEee
Confidence            999999999999999987775  344444455555543  22232  2346788    999999998875  455554  


Q ss_pred             --hhHhhhhhhHHHHHHHHHHHH
Q 018522           75 --YQRILHLLYVDDLLAMMKQSF   95 (354)
Q Consensus        75 --yq~il~l~yvd~LL~~v~~~F   95 (354)
                        +-.++-+.++..|++.+...|
T Consensus        73 ~~eNel~~~e~l~~~v~~l~~~~   95 (141)
T PF01217_consen   73 ENENELLLLEFLHRLVEVLDDYF   95 (141)
T ss_dssp             STSBHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHhhhhhhhhh
Confidence              455665666666665555544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the small sigma and mu subunits of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and the zeta and delta subunits of various coatomer (COP) adaptors. The small sigma subunit of AP proteins have been characterised in several species [, , , ]. The sigma subunit plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The zeta subunit of coatomers (zeta-COP) is required for coatomer binding to Golgi membranes and for coat-vesicle assembly [, ]. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1W63_W 2JKR_I 2VGL_S 2JKT_I 2XA7_S 2HF6_A 3TJZ_C.

>PF13774 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3BW6_A 1H8M_A 3EGX_C 2NUP_C 3EGD_C 2NUT_C 3KYQ_A 1IFQ_B 2VX8_D

Probab=86.94  E-value=3.2  Score=32.42  Aligned_cols=50  Identities=16%  Similarity=0.331  Sum_probs=37.9

Q ss_pred             cceeeecCCCceEEEEEEecCCceEEeehhhHhhhhhhHHHHHHHHHHHHHHhcCC
Q 018522           46 ASFNYDSAGAAYTLKWTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIYDP  101 (354)
Q Consensus        46 ~~~~~~~~~d~y~lkw~~~ne~~LvfVvvyq~il~l~yvd~LL~~v~~~F~~~y~~  101 (354)
                      .+|.+    ++|.++|...  =+|+|+++=-+-..-.-.=.||++|+..|...|..
T Consensus        17 ~s~~~----~~~~fh~~~~--~~i~~~citd~~~~~r~aF~fL~~i~~~F~~~~~~   66 (83)
T PF13774_consen   17 MSYES----GNYVFHYLVE--DGIAYLCITDKSYPKRVAFAFLEEIKQEFIQTYGG   66 (83)
T ss_dssp             EEEEE----TTEEEEEEEE--TTEEEEEEEETTS-HHHHHHHHHHHHHHHHHHCTT
T ss_pred             EEEEE----CCEEEEEEEc--CCeEEEEEEcCCCCcchHHHHHHHHHHHHHHHcCc
Confidence            47888    9999999884  45788887544445555567888899999999984

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	354
2fh5_A	185	The Structure Of The Mammalian Srp Receptor Length		6e-14

>pdb|2FH5|A Chain A, The Structure Of The Mammalian Srp Receptor Length = 185

Iteration: 1
 Score = 75.1 bits (183), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 40/99 (40%), Positives = 62/99 (62%), Gaps = 5/99 (5%)
Query: 1   MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLK 60
           M++   IF++GGL+LW  + + ++  G P++ LIRS LL+ER G  SF ++    A TLK
Sbjct: 10  MVDFFTIFSKGGLVLWCFQGVSDSCTG-PVNALIRSVLLQERGGNNSFTHE----ALTLK 64
Query: 61  WTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIY 99
           +   N+  LVFV  +Q+IL L YVD L+  + + F + Y
Sbjct: 65  YKLDNQFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKY 103
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	354
2fh5_A	185	Signal recognition particle receptor alpha subunit	1e-42

>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1 Length = 185

 Score =  146 bits (368), Expect = 1e-42
 Identities = 50/184 (27%), Positives = 84/184 (45%), Gaps = 17/184 (9%)

Query: 1   MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLK 60
           M++   IF++GGL+LW  + + ++    P++ LIRS LL+ER G  SF +++     TLK
Sbjct: 10  MVDFFTIFSKGGLVLWCFQGVSDS-CTGPVNALIRSVLLQERGGNNSFTHEA----LTLK 64

Query: 61  WTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIYDPKRTDYS---------DFDE 111
           +   N+  LVFV  +Q+IL L YVD L+  + + F + Y  +    S         DF  
Sbjct: 65  YKLDNQFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQN 124

Query: 112 MFRQLRKEAEARAEELKKSKQVTKPMNNLKKQGGQLQKGGFERGSNRSGGGSANDDGDSD 171
            F +L +EAE  ++    +       +   K+     +   E    +    + N      
Sbjct: 125 DFLRLLREAEESSKIRAPTTMKKFEDSEKAKKPV---RSMIETRGEKPKEKAKNSKKKGA 181

Query: 172 NMRG 175
              G
Sbjct: 182 KKEG 185

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	354
2fh5_A	185	Signal recognition particle receptor alpha subunit	100.0
1nrj_A	158	Signal recognition particle receptor alpha subunit	99.54
2vx8_A	169	Nucleoporin-like protein RIP, vesicle-associated m	99.46
4afi_A	173	AP-3 complex subunit delta-1, vesicle-associated p	97.46
4b93_A	189	Vesicle-associated membrane protein 7; endocytosis	96.52
2nut_C	196	Vesicle-trafficking protein SEC22B; human copii SE	96.19
2vgl_S	142	AP-2 complex subunit sigma-1; cytoplasmic vesicle,	94.44
1w63_Q	158	Adapter-related protein complex 1 sigma 1A subunit	94.05
1w63_M	423	Adaptor-related protein complex 1, MU 1 subunit; e	92.02
2vgl_M	435	AP-2 complex subunit MU-1; cytoplasmic vesicle, al	91.61
3tjz_C	153	Coatomer subunit zeta-1; protein trafficking, golg	89.19
3bw6_A	144	Synaptobrevin homolog YKT6; YKT6P, farnesylation,	84.13

>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1

Probab=100.00  E-value=1.2e-46  Score=339.04  Aligned_cols=147  Identities=34%  Similarity=0.541  Sum_probs=103.9

Q ss_pred             CcceEEEecCCcEEEeeecccCCCCCCCchHHHHHHhHhccccCCcceeeecCCCceEEEEEEecCCceEEeehhhHhhh
Q 018522            1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLKWTFHNELGLVFVAVYQRILH   80 (354)
Q Consensus         1 MiD~f~IftkgG~VLW~~~~~~~~~~~~~iN~lI~~vlleer~~~~~~~~~~~~d~y~lkw~~~ne~~LvfVvvyq~il~   80 (354)
                      |.|+|+|||+||||||||+.. ..++++|||+||++||||||+++.+|.+    |+|+|+|+++|+++||||||||+|||
T Consensus        10 ~~D~~~IfTkGGvVLWs~~~~-~~~~~~~IN~LIr~VlLEER~~~~~y~~----d~ytlkW~l~NEl~LVFVvVYQ~iL~   84 (185)
T 2fh5_A           10 MVDFFTIFSKGGLVLWCFQGV-SDSCTGPVNALIRSVLLQERGGNNSFTH----EALTLKYKLDNQFELVFVVGFQKILT   84 (185)
T ss_dssp             SCSEEEEEETTSBEEEEEBTT-TBSCCCHHHHHHHHTGGGC-------CC----CCCEEEEEEETTTTEEEEEEESCGGG
T ss_pred             ceeEEEEEeCCeEEEEeecCC-cccccchHHHHHHHhhhccccCCCceeE----cCeEEEEEEeccCCEEEEEEEccccc
Confidence            899999999999999987544 3578999999999999999999999999    99999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHhcCCcC---C------CCcchHHHHHHHHHHHHHHHHHhhhccccccccccccccCCCccCCC
Q 018522           81 LLYVDDLLAMMKQSFSEIYDPKR---T------DYSDFDEMFRQLRKEAEARAEELKKSKQVTKPMNNLKKQGGQLQKGG  151 (354)
Q Consensus        81 l~yvd~LL~~v~~~F~~~y~~~~---~------~~~~Fd~~F~~~l~e~e~~s~~~~~~~~~~~~~~~s~k~~~~~~~~~  151 (354)
                      |+|||+||++|+++|+++|++.+   .      .+.+||++|+++|+++|++++..+  +++|++|+++.+++       
T Consensus        85 L~YiD~LL~~v~~~Fv~~Y~~~L~~~~~~~~~~~~~~Fd~~F~~~l~~~e~~~~~~~--~k~mr~fees~ks~-------  155 (185)
T 2fh5_A           85 LTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRLLREAEESSKIRA--PTTMKKFEDSEKAK-------  155 (185)
T ss_dssp             HHHHHHHHHHHHHHHHHHTHHHHHSSSTHHHHSCCCCCHHHHHHHHHHHHHHTC--------------------------
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhhcccccccccccCchhHHHHHHHHHHHHHHHhhh--HHhhccHhhhhhhh-------
Confidence            99999999999999999997652   1      245799999999999999876533  44699999998765       


Q ss_pred             CCCCCCCCCCCCC
Q 018522          152 FERGSNRSGGGSA  164 (354)
Q Consensus       152 ~~~k~~~s~~~~~  164 (354)
                         +++++|++.+
T Consensus       156 ---k~~~~~i~~~  165 (185)
T 2fh5_A          156 ---KPVRSMIETR  165 (185)
T ss_dssp             -------------
T ss_pred             ---hhhhhhcccc
Confidence               6778888664

>1nrj_A Signal recognition particle receptor alpha subunit homolog; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: d.110.4.4

Probab=99.54  E-value=1.2e-14  Score=124.40  Aligned_cols=98  Identities=20%  Similarity=0.382  Sum_probs=77.8

Q ss_pred             CcceEEEecCCcEEEeeecccCCCCCCCchHHHHHHhHhccccCC----c------ceeee------cCCCceEEEEEEe
Q 018522            1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGL----A------SFNYD------SAGAAYTLKWTFH   64 (354)
Q Consensus         1 MiD~f~IftkgG~VLW~~~~~~~~~~~~~iN~lI~~vlleer~~~----~------~~~~~------~~~d~y~lkw~~~   64 (354)
                      |||||+|||++|.|||+|+|.++++...+||++|++.|.++-+..    +      .|.++      ++.++|+.+|+..
T Consensus         1 M~dQf~IFTp~GqVLy~yn~l~kKf~e~qiN~fIS~LitsP~~~~~~~s~~~~~~~k~~~~~i~~~~k~~~~f~~~~~~s   80 (158)
T 1nrj_A            1 MFDQLAVFTPQGQVLYQYNCLGKKFSEIQINSFISQLITSPVTRKESVANANTDGFDFNLLTINSEHKNSPSFNALFYLN   80 (158)
T ss_dssp             CCCEEEEECTTCBEEEEEETTSCCCCHHHHHHHHHHHHHSCCCGGGEECSGGGTTCCEEEEECC--------CEEEEEEE
T ss_pred             CcceEEEeccCceEEEEecccCcchHHHHHHHHHHHHhcCCcccccccccccccccceeeEeecccccCCCCeeEEEEec
Confidence            999999999999999999999999999999999999999986422    1      56655      6679999999999


Q ss_pred             cCCceEEeehhhH-hhhhhh-HHHHHHHHHHHHHHh
Q 018522           65 NELGLVFVAVYQR-ILHLLY-VDDLLAMMKQSFSEI   98 (354)
Q Consensus        65 ne~~LvfVvvyq~-il~l~y-vd~LL~~v~~~F~~~   98 (354)
                      ++++|||||.|.. .|+|+- .+..|+.+.+++-.+
T Consensus        81 kQP~LyfVvtyaeqsleLn~Eae~~L~l~~~LWdSL  116 (158)
T 1nrj_A           81 KQPELYFVVTFAEQTLELNQETQQTLALVLKLWNSL  116 (158)
T ss_dssp             ETTEEEEEEEESSCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCcEEEEEEecccccccCcHHHHHHHHHHHHHHhc
Confidence            9999999999954 455554 344888888877543

>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A

Probab=99.46  E-value=4.6e-14  Score=125.65  Aligned_cols=113  Identities=12%  Similarity=0.199  Sum_probs=92.7

Q ss_pred             CcceEEEecCCcEEEeeecccCCCCCCCchHHHHHHhHhccccCCcceeeecCCCceEEEEEEecCCceEEeehhhHhhh
Q 018522            1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLKWTFHNELGLVFVAVYQRILH   80 (354)
Q Consensus         1 MiD~f~IftkgG~VLW~~~~~~~~~~~~~iN~lI~~vlleer~~~~~~~~~~~~d~y~lkw~~~ne~~LvfVvvyq~il~   80 (354)
                      |++.+++|++||+|||.++... .....+++.+|+.+..  +.+..+|.+    ++|+++|..+|  +|+|++++++.+.
T Consensus        44 M~ilYa~VaRG~~VLae~t~~~-gnf~~iak~ll~kl~~--~~~r~s~~~----~~y~fHyl~~n--gl~yl~I~D~~yp  114 (169)
T 2vx8_A           44 MAILFAVVARGTTILAKHAWCG-GNFLEVTEQILAKIPS--ENNKLTYSH----GNYLFHYICQD--RIVYLCITDDDFE  114 (169)
T ss_dssp             SCCCEEEEEETTEEEEEEESSC-BSHHHHHHHHHTTSCS--SCEEEEEEE----TTEEEEEEEET--TEEEEEEEETTSC
T ss_pred             CceEEEEEEcCCEEEEEeccCC-CCHHHHHHHHHhhCCC--CCCceEEEE----CCEEEEEEEEC--CEEEEEEEccccc
Confidence            9999999999999999876542 4566677777777765  333457999    99999999987  8999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHhcCCcCC---CCcchHHHHHHHHHHHHHH
Q 018522           81 LLYVDDLLAMMKQSFSEIYDPKRT---DYSDFDEMFRQLRKEAEAR  123 (354)
Q Consensus        81 l~yvd~LL~~v~~~F~~~y~~~~~---~~~~Fd~~F~~~l~e~e~~  123 (354)
                      ..++..||++|+.+|...|.+...   .| .|++.|+.+|++.+..
T Consensus       115 ~r~AF~fLedI~~eF~~~y~~~~~~a~py-sf~~eF~~~Lk~~~~~  159 (169)
T 2vx8_A          115 RSRAFSFLNEVKKRFQTTYGSRAQTALPY-AMNSEFSSVLAAQLKH  159 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTGGGTCCTT-TTHHHHHHHHSCC---
T ss_pred             hHHHHHHHHHHHHHHHHHhhhhhhccCCc-chhHHHHHHHHHHHHH
Confidence            999999999999999999987532   45 6999999999765543

>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}

Probab=97.46  E-value=0.0011  Score=58.68  Aligned_cols=105  Identities=14%  Similarity=0.241  Sum_probs=72.6

Q ss_pred             eEEEecCCcEEEeeecccCCCCCCCchHHHHHHhHhccccCC--cceeeecCCCceEEEEEEecCCceEEeehhhHhhhh
Q 018522            4 QLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGL--ASFNYDSAGAAYTLKWTFHNELGLVFVAVYQRILHL   81 (354)
Q Consensus         4 ~f~IftkgG~VLW~~~~~~~~~~~~~iN~lI~~vlleer~~~--~~~~~~~~~d~y~lkw~~~ne~~LvfVvvyq~il~l   81 (354)
                      ..+.+.+|.+||..++...     .....+++.||-.=-...  .+|.+    ++|.++|...+  +|+|+++=.+-..-
T Consensus        57 ~Ya~VArg~tiLAE~t~~~-----gnf~~va~~iL~kip~~~~r~t~~~----~~y~fHyl~~d--gl~yl~i~D~~~~r  125 (173)
T 4afi_A           57 LFAVVARGTTILAKHAWCG-----GNFLEVTEQILAKIPSENNKLTYSH----GNYLFHYICQD--RIVYLCITDDDFER  125 (173)
T ss_dssp             EEEEEEETTEEEEEEESSC-----CCHHHHHHHHHTTSCSSSEEEEEEE----TTEEEEEEEET--TEEEEEEEETTSCH
T ss_pred             EEEEEECCCEEEEEccCCC-----CCHHHHHHHHHHhCCCCCCeEEEEE----CCEEEEEEEEC--CEEEEEEECCccCh
Confidence            3567889999999876542     234577777773221112  47889    99999988865  67777774444444


Q ss_pred             hhHHHHHHHHHHHHHHhcCCcCC---CCcchHHHHHHHHHHH
Q 018522           82 LYVDDLLAMMKQSFSEIYDPKRT---DYSDFDEMFRQLRKEA  120 (354)
Q Consensus        82 ~yvd~LL~~v~~~F~~~y~~~~~---~~~~Fd~~F~~~l~e~  120 (354)
                      .-.-.||++|+.+|...|+....   .| .|...|..+|++.
T Consensus       126 r~aF~FLedI~~eF~~~yg~~~~ta~py-a~~~eF~~~L~~~  166 (173)
T 4afi_A          126 SRAFSFLNEVKKRFQTTYGSRAQTALPY-AMNSEFSSVLAAQ  166 (173)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGGGTCCTT-TTHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhchhhhhccCc-chhHHHHHHHHHH
Confidence            44455788889999999976432   35 5888999998764

>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A

Probab=96.52  E-value=0.021  Score=50.95  Aligned_cols=105  Identities=13%  Similarity=0.239  Sum_probs=66.0

Q ss_pred             eEEEecCCcEEEeeecccCCCCCCCchHHHHHHhHhccccCC---cceeeecCCCceEEEEEEecCCceEEeehhhHhhh
Q 018522            4 QLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGL---ASFNYDSAGAAYTLKWTFHNELGLVFVAVYQRILH   80 (354)
Q Consensus         4 ~f~IftkgG~VLW~~~~~~~~~~~~~iN~lI~~vlleer~~~---~~~~~~~~~d~y~lkw~~~ne~~LvfVvvyq~il~   80 (354)
                      .++.+.+|++||=.++...     .....+++.+| +.....   .+|.+    ++|.++|..++  +|+|+++--.-..
T Consensus         5 lYa~VArg~~iLae~t~~~-----gnf~~ia~~iL-~kip~~~~k~s~~~----~~y~fHyl~~~--gl~yl~i~d~~yp   72 (189)
T 4b93_A            5 LFAVVARGTTILAKHAWCG-----GNFLEVTEQIL-AKIPSENNKLTYSH----GNYLFHYICQD--RIVYLCITDDDFE   72 (189)
T ss_dssp             EEEEEEETTEEEEEEESSE-----ECHHHHHHHHH-TTCCSSSEEEEEEE----TTEEEEEEEET--TEEEEEEEETTSC
T ss_pred             EEEEEEeCCEEEEeCCCCC-----CCHHHHHHHHH-HhCCCCCCeEEEEE----CCEEEEEEEeC--CeEEEEEEcCccC
Confidence            3567789999997664331     22445555554 333322   37999    99999987766  5788887333333


Q ss_pred             hhhHHHHHHHHHHHHHHhcCCcCC---CCcchHHHHHHHHHHHH
Q 018522           81 LLYVDDLLAMMKQSFSEIYDPKRT---DYSDFDEMFRQLRKEAE  121 (354)
Q Consensus        81 l~yvd~LL~~v~~~F~~~y~~~~~---~~~~Fd~~F~~~l~e~e  121 (354)
                      -.-.-.||+.|+.+|...|.....   .| .|...|...|++.-
T Consensus        73 ~r~af~fL~~i~~eF~~~~~~~~~~~~~~-~~~~~f~~~l~~~~  115 (189)
T 4b93_A           73 RSRAFSFLNEVKKRFQTTYGSRAQTALPY-AMNSEFSSVLAAQL  115 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHGGGGGTCCTT-TTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhccccccccCCc-cccchhhHHHHHHH
Confidence            333445677788899999976532   23 46666776665543

>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A

Probab=96.19  E-value=0.03  Score=49.89  Aligned_cols=95  Identities=14%  Similarity=0.159  Sum_probs=56.4

Q ss_pred             CcceEEEecCC--cEEEeeecccCCC--CCCCchHHHHHHhHhccc--c-CCcceeeecCCCceEEEEEEecCCceEEee
Q 018522            1 MLEQLLIFTRG--GLILWTCKELGNA--LKGSPIDTLIRSCLLEER--S-GLASFNYDSAGAAYTLKWTFHNELGLVFVA   73 (354)
Q Consensus         1 MiD~f~Iftkg--G~VLW~~~~~~~~--~~~~~iN~lI~~vlleer--~-~~~~~~~~~~~d~y~lkw~~~ne~~LvfVv   73 (354)
                      ||-.. .+.+|  |+||=.+...+..  .....+..+++.+|-.=.  . ...+|.+    ++|.++|...+  +|+|++
T Consensus         2 Mi~ya-~IaR~~d~~iLa~~~d~~~~~~~~~~~~~~~a~~il~ki~~~~~~r~s~~~----~~y~fhy~~~~--gl~~l~   74 (196)
T 2nut_C            2 MVLLT-MIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEA----GAMTFHYIIEQ--GVCYLV   74 (196)
T ss_dssp             CCCCE-EEEETTTCCEEEEECCCC-----CHHHHHHHHHHHHHHCCTTSCSEEEEEE----TTEEEEEEEET--TEEEEE
T ss_pred             ceEEE-EEEEcCCCcEEEEeecccccccccHHHHHHHHHHHHHhcCCCCCCeEEEEe----CCEEEEEEeCC--CeEEEE
Confidence            66444 55777  9999865543211  011225566665553221  1 1247888    99999987765  577777


Q ss_pred             hhhHhhhhhhHHHHHHHHHHHHHHhcCCc
Q 018522           74 VYQRILHLLYVDDLLAMMKQSFSEIYDPK  102 (354)
Q Consensus        74 vyq~il~l~yvd~LL~~v~~~F~~~y~~~  102 (354)
                      +--.-..-...-.||+.|+.+|...|...
T Consensus        75 i~d~~yp~r~af~fL~~i~~~F~~~~~~~  103 (196)
T 2nut_C           75 LCEAAFPKKLAFAYLEDLHSEFDEQHGKK  103 (196)
T ss_dssp             EEETTSCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             EEcCCcchHHHHHHHHHHHHHHHHhccch
Confidence            73333333344556777888898888754

>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S

Probab=94.44  E-value=0.1  Score=44.00  Aligned_cols=105  Identities=12%  Similarity=0.089  Sum_probs=64.8

Q ss_pred             CcceEEEecCCcEEEeeecccCC--CCCCCchHHHHHHhHhccccC-C-cceeeecCCCceEEEEEEecCCceEEeehhh
Q 018522            1 MLEQLLIFTRGGLILWTCKELGN--ALKGSPIDTLIRSCLLEERSG-L-ASFNYDSAGAAYTLKWTFHNELGLVFVAVYQ   76 (354)
Q Consensus         1 MiD~f~IftkgG~VLW~~~~~~~--~~~~~~iN~lI~~vlleer~~-~-~~~~~~~~~d~y~lkw~~~ne~~LvfVvvyq   76 (354)
                      ||..+.|+++.|-+|-++.+.+-  ......+..+.+.++  .|.. . .-+.+    +++++-|.-.+.  |+||++=.
T Consensus         1 MI~~i~i~~~~Gk~~l~k~y~~~~~~~~~~~~~~f~~~v~--~~~~~~~~~~~~----~~~~~vy~~~~~--Lyfv~~~~   72 (142)
T 2vgl_S            1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVT--VRDAKHTNFVEF----RNFKIIYRRYAG--LYFCICVD   72 (142)
T ss_dssp             CEEEEEEEETTSCEEEEEECSCCCHHHHHHHHHHHHHHHH--TCCTTSCSEEEE----TTEEEEEEEETT--EEEEEEEC
T ss_pred             CeEEEEEEcCCCCEEEEEeCCCCChhhhHHHHHHHHHHHh--cCCCCCCCEEEE----CCEEEEEEEECC--EEEEEEeC
Confidence            99999999999999988777521  112234555655555  3432 2 34577    889999988874  68888765


Q ss_pred             HhhhhhhHHHHHHHHHHHHHHhcCCcC--CCCcchHHHH
Q 018522           77 RILHLLYVDDLLAMMKQSFSEIYDPKR--TDYSDFDEMF  113 (354)
Q Consensus        77 ~il~l~yvd~LL~~v~~~F~~~y~~~~--~~~~~Fd~~F  113 (354)
                      .--+-.-+=++|..+...|.+.+++..  ..-++|+..+
T Consensus        73 ~~~N~l~~le~L~~~ve~l~~yf~~v~E~~I~~Nf~~vy  111 (142)
T 2vgl_S           73 VNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVY  111 (142)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHTTSCCHHHHHHTHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence            444444444555555566666665532  1233455555

>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=94.05  E-value=0.16  Score=43.71  Aligned_cols=93  Identities=14%  Similarity=0.187  Sum_probs=54.9

Q ss_pred             CcceEEEecCCcEEEeeecccCCCCC--CCchHHHHHHhHhccccC--CcceeeecCCCceEEEEEEecCCceEEeehhh
Q 018522            1 MLEQLLIFTRGGLILWTCKELGNALK--GSPIDTLIRSCLLEERSG--LASFNYDSAGAAYTLKWTFHNELGLVFVAVYQ   76 (354)
Q Consensus         1 MiD~f~IftkgG~VLW~~~~~~~~~~--~~~iN~lI~~vlleer~~--~~~~~~~~~~d~y~lkw~~~ne~~LvfVvvyq   76 (354)
                      ||..+.|+++.|-++-++.+.+....  ...+..+.+-+  ..|..  ..-+.+    +++++-|.-.+  +|+||++=.
T Consensus         1 MI~~i~Il~~~Gk~~lsk~y~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~i~~----~~~~~vy~~~~--~Lyfv~~~~   72 (158)
T 1w63_Q            1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVV--LARKPKMCSFLEW----RDLKVVYKRYA--SLYFCCAIE   72 (158)
T ss_dssp             CEEEEEEECSSSCEEEEEESSCCCHHHHHHHHHHHHHHH--HTSCSSSCSEEEE----TTEEEEEEEET--TEEEEEEEC
T ss_pred             CeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHHHH--hccCCCCCCeEEE----CCEEEEEEEEC--CEEEEEEec
Confidence            99999999999999988777632100  01233333322  23432  234577    88999998877  468888754


Q ss_pred             HhhhhhhHHHHHHHHHHHHHHhcCC
Q 018522           77 RILHLLYVDDLLAMMKQSFSEIYDP  101 (354)
Q Consensus        77 ~il~l~yvd~LL~~v~~~F~~~y~~  101 (354)
                      .--+-..+=+||..+...|.+.|++
T Consensus        73 ~~~Nel~~le~L~~~vevl~~yf~~   97 (158)
T 1w63_Q           73 GQDNELITLELIHRYVELLDKYFGS   97 (158)
T ss_dssp             SSSCHHHHHHHHHHHHHHHHHHHSS
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHcc
Confidence            4333333344444444445555554

>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=92.02  E-value=0.59  Score=46.22  Aligned_cols=106  Identities=17%  Similarity=0.216  Sum_probs=66.4

Q ss_pred             CcceEEEecCCcEEEeeecccCCCCCCCchHHHHHHhHhccc--cCCcceeeecCCCceEEEEEEecCCceEEeehhhHh
Q 018522            1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEER--SGLASFNYDSAGAAYTLKWTFHNELGLVFVAVYQRI   78 (354)
Q Consensus         1 MiD~f~IftkgG~VLW~~~~~~~~~~~~~iN~lI~~vlleer--~~~~~~~~~~~~d~y~lkw~~~ne~~LvfVvvyq~i   78 (354)
                      ||..+.|+++.|-+|-++.+.+. .....+..|.+.++-...  ....-+.+    +++.+-|.-.++  |+||++-..-
T Consensus         2 MI~~i~I~~~~Gk~~l~k~y~~~-~~~~~~~~f~~~v~~~~~~~~~~~~i~~----~~~~~vy~~~~~--Lyfv~~~~~~   74 (423)
T 1w63_M            2 SASAVYVLDLKGKVLICRNYRGD-VDMSEVEHFMPILMEKEEEGMLSPILAH----GGVRFMWIKHNN--LYLVATSKKN   74 (423)
T ss_dssp             CCCEEEEEETTTEECSCBCCSCS-CTTTTHHHHHHHHHHHHHTSCCCSEEEE----TTEEEEEEEETT--EEEEEEESSC
T ss_pred             ceEEEEEECCCCCEEEEEecCCC-CChHHHHHHHHHHhhccccCCCCCEEEE----CCEEEEEEEECC--EEEEEEecCC
Confidence            99999999999999988777642 234557777766653321  22235678    889888888775  6777775443


Q ss_pred             hhhhhHHHHHHHHHHHHHHhcCCcCC--CCcchHHHH
Q 018522           79 LHLLYVDDLLAMMKQSFSEIYDPKRT--DYSDFDEMF  113 (354)
Q Consensus        79 l~l~yvd~LL~~v~~~F~~~y~~~~~--~~~~Fd~~F  113 (354)
                      -.-..+=+||..+...+.+.|++...  .-++|+..|
T Consensus        75 ~n~l~~le~L~~~v~~l~~yf~~v~E~~I~~Nf~~vy  111 (423)
T 1w63_M           75 ACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIY  111 (423)
T ss_dssp             CCTHHHHHHHHHHHHHHHHHSSCCSHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHhHHHHH
Confidence            33444445555555566666654321  233455554

>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M

Probab=91.61  E-value=0.62  Score=46.23  Aligned_cols=105  Identities=14%  Similarity=0.192  Sum_probs=63.1

Q ss_pred             CcceEEEecCCcEEEeeecccCCCCCCCchHHHHHHhHhcccc--CCcceeeecCCCceEEEEEEecCCceEEeehhhHh
Q 018522            1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERS--GLASFNYDSAGAAYTLKWTFHNELGLVFVAVYQRI   78 (354)
Q Consensus         1 MiD~f~IftkgG~VLW~~~~~~~~~~~~~iN~lI~~vlleer~--~~~~~~~~~~~d~y~lkw~~~ne~~LvfVvvyq~i   78 (354)
                      ||..+.|+++.|-+|-++.+.+. .....+..+.+.++ ..|.  ...-+.+    +++.+-|.-.+.  |+||++-..-
T Consensus         1 MI~~i~I~~~~Gk~~l~k~y~~~-~~~~~~~~f~~~v~-~~~~~~~~~ii~~----~~~~~vy~~~~~--Lyfv~~~~~~   72 (435)
T 2vgl_M            1 MIGGLFIYNHKGEVLISRVYRDD-IGRNAVDAFRVNVI-HARQQVRSPVTNI----ARTSFFHVKRSN--IWLAAVTKQN   72 (435)
T ss_dssp             CCCEEEEECTTCCEEEEEECSSS-CCHHHHHHHHHHTT-TCSSCCCCSEEEE----TTEEEEEEEETT--EEEEEEESSC
T ss_pred             CeEEEEEECCCCCEEEEEecCCC-CChhHHHHHHHHHh-ccccCCCCCEEEE----CCEEEEEEEECC--EEEEEEecCC
Confidence            99999999999999988777631 22344555555444 3232  2234678    889888887775  7888875433


Q ss_pred             hhhhhHHHHHHHHHHHHHHhcCCcC--CCCcchHHHH
Q 018522           79 LHLLYVDDLLAMMKQSFSEIYDPKR--TDYSDFDEMF  113 (354)
Q Consensus        79 l~l~yvd~LL~~v~~~F~~~y~~~~--~~~~~Fd~~F  113 (354)
                      -.-..+=+||..+...+.+.|+...  ..-++|+..|
T Consensus        73 ~n~l~~le~L~~~v~vl~~yf~~v~E~~I~~Nf~~vy  109 (435)
T 2vgl_M           73 VNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIY  109 (435)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHSSCCHHHHHHTHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhccCHHHHHHhHHHHH
Confidence            3333344444444445555555422  1233566555

>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A

Probab=89.19  E-value=1.9  Score=36.88  Aligned_cols=104  Identities=11%  Similarity=0.137  Sum_probs=59.6

Q ss_pred             CcceEEEecCCcEEEeeecccCCCCCCCchHHHHHHhHhc-cccCCcceeeecCCCceEEEEEEecCCceEEeehhh---
Q 018522            1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLE-ERSGLASFNYDSAGAAYTLKWTFHNELGLVFVAVYQ---   76 (354)
Q Consensus         1 MiD~f~IftkgG~VLW~~~~~~~~~~~~~iN~lI~~vlle-er~~~~~~~~~~~~d~y~lkw~~~ne~~LvfVvvyq---   76 (354)
                      ||-.+.|+.+.|-++-+..+.+.-.....-.+++++++-- .|.....+.+    +++++-|.-.+.  |+||++-.   
T Consensus        12 mI~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~~~r~~~~i~~~----~~~~~vy~~~~~--Lyfv~~~~~~e   85 (153)
T 3tjz_C           12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRTDSEIALL----EGLTVVYKSSID--LYFYVIGSSYE   85 (153)
T ss_dssp             CEEEEEEECTTSCEEEEEECSSSSCSHHHHHHHHHHHHHHHSSCCCCEEEE----TTEEEEEEECSS--CEEEEEEETTS
T ss_pred             HheEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCCCEEEE----CCEEEEEEEECC--EEEEEEEcCCC
Confidence            8889999999999998766652101111123344333211 2443446778    999999988875  66776643   


Q ss_pred             -HhhhhhhHHHHHHHHHHHHHHhcCCcC--CCCcchHHHH
Q 018522           77 -RILHLLYVDDLLAMMKQSFSEIYDPKR--TDYSDFDEMF  113 (354)
Q Consensus        77 -~il~l~yvd~LL~~v~~~F~~~y~~~~--~~~~~Fd~~F  113 (354)
                       .++-|.++..|.+.+..-|.   ++..  ..-++|+..+
T Consensus        86 Nel~ile~L~~~ve~l~~yf~---~~v~E~~I~~Nf~~vy  122 (153)
T 3tjz_C           86 NELMLMTVLNCLFDSLSQMLR---KNVEKRALLENMEGLF  122 (153)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHT---SCCCHHHHHHTHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHH
Confidence             44455555555555544442   3322  1234566655

>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A

Probab=84.13  E-value=7.3  Score=32.73  Aligned_cols=98  Identities=12%  Similarity=0.118  Sum_probs=55.9

Q ss_pred             cEEEeeecccCC--CCCCCchHH---HHHHhHhccc-cC-CcceeeecCCCceEEEEEEecCCceEEeeh----hhHhhh
Q 018522           12 GLILWTCKELGN--ALKGSPIDT---LIRSCLLEER-SG-LASFNYDSAGAAYTLKWTFHNELGLVFVAV----YQRILH   80 (354)
Q Consensus        12 G~VLW~~~~~~~--~~~~~~iN~---lI~~vlleer-~~-~~~~~~~~~~d~y~lkw~~~ne~~LvfVvv----yq~il~   80 (354)
                      +++|=...-...  -+-.+.|-.   +|...|++-- .+ ..+|.+    ++|.++|... +-+|+||++    |++-+-
T Consensus        20 ~~~L~~~~d~s~f~ffqr~sv~ef~~~~ar~i~~r~~~~~R~sv~~----~~y~fH~~~~-~~gl~~l~i~D~~yp~rvA   94 (144)
T 3bw6_A           20 ALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAGQRQSIEE----GNYIGHVYAR-SEGICGVLITDKEYPVRPA   94 (144)
T ss_dssp             CEEEEEEECCTTSCTTTTTHHHHHHHHHHHHHHHHCCTTEEEEEEE----TTEEEEEEEC-TTSEEEEEEEETTSCHHHH
T ss_pred             CeEeEeeecccccChhhhhhHHHHHHHHHHHHHhhCCCCceEEEEe----CCEEEEEEEe-cCCEEEEEEECCCCChhHH
Confidence            777754332211  123444553   3444454421 12 247899    9999988832 346778777    766665


Q ss_pred             hhhHHHHHHHHHHHHHHhcCCc-CC---C---CcchHHHHHHHHHH
Q 018522           81 LLYVDDLLAMMKQSFSEIYDPK-RT---D---YSDFDEMFRQLRKE  119 (354)
Q Consensus        81 l~yvd~LL~~v~~~F~~~y~~~-~~---~---~~~Fd~~F~~~l~e  119 (354)
                      -+|    |++|+.+|...|... ..   .   -..| ..|+.+|..
T Consensus        95 F~~----L~~i~~eF~~~y~~~~~~~~~~~~~~~~f-~~l~~~i~k  135 (144)
T 3bw6_A           95 YTL----LNKILDEYLVAHPKEEWADVTETNDALKM-KQLDTYISK  135 (144)
T ss_dssp             HHH----HHHHHHHHHHHSCGGGTTTCSSCCGGGCC-THHHHHHHH
T ss_pred             HHH----HHHHHHHHHHHccchhhhhcccccCCcch-HHHHHHHHH
Confidence            554    667788899989654 21   1   2246 566666643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	354
d2fh5a1	129	d.110.4.4 (A:1-129) Signal recognition particle re	2e-46

>d2fh5a1 d.110.4.4 (A:1-129) Signal recognition particle receptor alpha subunit, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 129

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: SRP alpha N-terminal domain-like
domain: Signal recognition particle receptor alpha subunit, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  152 bits (386), Expect = 2e-46
 Identities = 46/134 (34%), Positives = 74/134 (55%), Gaps = 14/134 (10%)

Query: 1   MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLK 60
           M++   IF++GGL+LW  + + ++    P++ LIRS LL+ER G  SF +++     TLK
Sbjct: 1   MVDFFTIFSKGGLVLWCFQGVSDS-CTGPVNALIRSVLLQERGGNNSFTHEA----LTLK 55

Query: 61  WTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIYDPKRTDYS---------DFDE 111
           +   N+  LVFV  +Q+IL L YVD L+  + + F + Y  +    S         DF  
Sbjct: 56  YKLDNQFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQN 115

Query: 112 MFRQLRKEAEARAE 125
            F +L +EAE  ++
Sbjct: 116 DFLRLLREAEESSK 129

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	354
d2fh5a1	129	Signal recognition particle receptor alpha subunit	100.0
d1nrja_	155	Srx domain of the signal recognition particle rece	99.47
d2vglm2	141	Mu2 adaptin (clathrin coat assembly protein AP50)	96.31
d1ifqa_	127	Sec22b {Mouse (Mus musculus) [TaxId: 10090]}	94.67
d2vgls_	142	Sigma2 adaptin (clathrin coat assembly protein AP1	94.39
d1ls1a1	88	Signal sequence recognition protein Ffh {Thermus a	85.21
d1j8yf1	84	Signal sequence recognition protein Ffh {Archaeon	83.55

>d2fh5a1 d.110.4.4 (A:1-129) Signal recognition particle receptor alpha subunit, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: SRP alpha N-terminal domain-like
domain: Signal recognition particle receptor alpha subunit, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-44  Score=304.65  Aligned_cols=119  Identities=39%  Similarity=0.666  Sum_probs=103.4

Q ss_pred             CcceEEEecCCcEEEeeecccCCCCCCCchHHHHHHhHhccccCCcceeeecCCCceEEEEEEecCCceEEeehhhHhhh
Q 018522            1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLKWTFHNELGLVFVAVYQRILH   80 (354)
Q Consensus         1 MiD~f~IftkgG~VLW~~~~~~~~~~~~~iN~lI~~vlleer~~~~~~~~~~~~d~y~lkw~~~ne~~LvfVvvyq~il~   80 (354)
                      |||+|+|||+||+|||+|...+ +..++|||+||++||||||+++++|.+    |+|+|+|+++||++||||||||+|||
T Consensus         1 MiD~f~IftkGGiVLW~~~~~~-~~~~~~IN~LI~~vlLEER~~~~~~~~----d~y~lkw~~~Ne~~lvfV~vYQ~il~   75 (129)
T d2fh5a1           1 MVDFFTIFSKGGLVLWCFQGVS-DSCTGPVNALIRSVLLQERGGNNSFTH----EALTLKYKLDNQFELVFVVGFQKILT   75 (129)
T ss_dssp             SCSEEEEEETTSBEEEEEBTTT-BSCCCHHHHHHHHTGGGC-------CC----CCCEEEEEEETTTTEEEEEEESCGGG
T ss_pred             CccEEEEEeCCeEEEEeecCCC-cccchhHHHHHHHhheecccCCCceeE----CCEEEEEEEeccCCEEEEEEEhhhhc
Confidence            9999999999999999876543 678999999999999999999999999    99999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHhcCCcC---------CCCcchHHHHHHHHHHHHHHH
Q 018522           81 LLYVDDLLAMMKQSFSEIYDPKR---------TDYSDFDEMFRQLRKEAEARA  124 (354)
Q Consensus        81 l~yvd~LL~~v~~~F~~~y~~~~---------~~~~~Fd~~F~~~l~e~e~~s  124 (354)
                      |+|+|+||++|+++|+++|++.+         ..+++||++|+++|+++|+++
T Consensus        76 l~yvd~lL~~i~~~F~~~y~~~l~~~~~~~~~~~~~~Fd~~F~~~l~~~e~~~  128 (129)
T d2fh5a1          76 LTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRLLREAEESS  128 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHTHHHHHSSSTHHHHSCCCCCHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcccccccccccccchHHHHHHHHHHHHHhc
Confidence            99999999999999999998753         135579999999999999765

>d1nrja_ d.110.4.4 (A:) Srx domain of the signal recognition particle receptor alpha-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: SRP alpha N-terminal domain-like
domain: Srx domain of the signal recognition particle receptor alpha-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.47  E-value=5.7e-14  Score=117.74  Aligned_cols=97  Identities=21%  Similarity=0.377  Sum_probs=73.7

Q ss_pred             CcceEEEecCCcEEEeeecccCCCCCCCchHHHHHHhHhccccCCc----------ceeee------cCCCceEEEEEEe
Q 018522            1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLA----------SFNYD------SAGAAYTLKWTFH   64 (354)
Q Consensus         1 MiD~f~IftkgG~VLW~~~~~~~~~~~~~iN~lI~~vlleer~~~~----------~~~~~------~~~d~y~lkw~~~   64 (354)
                      |||||+|||++|.|||+|+|.++++...+||++|++.|-++-..+.          .|..+      ++..+++..|++.
T Consensus         1 M~dQf~vFTp~GqvLY~yN~l~kKfsE~qiN~fIShLissP~~~~es~~~~~~~~~~~~l~si~s~~k~s~~F~~~~h~s   80 (155)
T d1nrja_           1 MFDQLAVFTPQGQVLYQYNCLGKKFSEIQINSFISQLITSPVTRKESVANANTDGFDFNLLTINSEHKNSPSFNALFYLN   80 (155)
T ss_dssp             CCCEEEEECTTCBEEEEEETTSCCCCHHHHHHHHHHHHHSCCCGGGEECSGGGTTCCEEEEECC--------CEEEEEEE
T ss_pred             CcceEEEeccCceEEEEecccchHHHHHHHHHHHHHHhcCCccccccccccccccccceeeeeccccccCcchHHhheec
Confidence            9999999999999999999999999999999999999999865432          25443      3445899999999


Q ss_pred             cCCceEEeehhhH-hhhhhh-HHHHHHHHHHHHHH
Q 018522           65 NELGLVFVAVYQR-ILHLLY-VDDLLAMMKQSFSE   97 (354)
Q Consensus        65 ne~~LvfVvvyq~-il~l~y-vd~LL~~v~~~F~~   97 (354)
                      ++++|+|||.|.. -|+|+- ...-|+.+-.++-.
T Consensus        81 KqPeLy~VvTyAeqsleLN~EAe~vl~l~~~LWdS  115 (155)
T d1nrja_          81 KQPELYFVVTFAEQTLELNQETQQTLALVLKLWNS  115 (155)
T ss_dssp             ETTEEEEEEEESSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEEeccccchhhHHHHHHHHHHHHHHHh
Confidence            9999999999942 444443 44555555555433

>d1ifqa_ d.110.4.1 (A:) Sec22b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Synatpobrevin N-terminal domain
domain: Sec22b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.67  E-value=0.17  Score=40.29  Aligned_cols=47  Identities=17%  Similarity=0.396  Sum_probs=35.8

Q ss_pred             ceeeecCCCceEEEEEEecCCceEEeeh----hhHhhhhhhHHHHHHHHHHHHHHhcCCcC
Q 018522           47 SFNYDSAGAAYTLKWTFHNELGLVFVAV----YQRILHLLYVDDLLAMMKQSFSEIYDPKR  103 (354)
Q Consensus        47 ~~~~~~~~d~y~lkw~~~ne~~LvfVvv----yq~il~l~yvd~LL~~v~~~F~~~y~~~~  103 (354)
                      +|..    ++|+++|...+  +++|+++    |.+-+--    .||++|+.+|...|+...
T Consensus        53 s~~~----~~y~fHy~~~~--gi~yl~i~d~~~~~~laF----~fLeei~~eF~~~y~~~i  103 (127)
T d1ifqa_          53 TLEA----GAMTFHYIIEQ--GVCYLVLCEAAFPKKLAF----AYLEDLHSEFDEQHGKKV  103 (127)
T ss_dssp             EEEE----TTEEEEEEEET--TEEEEEEEETTSCHHHHH----HHHHHHHHHHHHHHTTTT
T ss_pred             EEEE----CCEEEEEEecC--CeEEEEEEccccCchhHH----HHHHHHHHHHHHhhhhhh
Confidence            6889    99999987765  5888887    5554443    567778889999997653

>d1ls1a1 a.24.13.1 (A:1-88) Signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Domain of the SRP/SRP receptor G-proteins
family: Domain of the SRP/SRP receptor G-proteins
domain: Signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=85.21  E-value=0.34  Score=36.25  Aligned_cols=37  Identities=19%  Similarity=0.448  Sum_probs=33.0

Q ss_pred             hhHHhhhhhccCcccchhchHHHHHHHHHHhhhcccc
Q 018522          316 WFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVV  352 (354)
Q Consensus       316 ~fssmFk~lvG~K~LT~eDLePvL~kMkdhLi~KNVA  352 (354)
                      -|++-|++|.|...||++|++.+|..++.-|+.=-|+
T Consensus         8 ~l~~a~~~l~g~~~i~E~~i~~~l~eir~ALLeADV~   44 (88)
T d1ls1a1           8 RLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVN   44 (88)
T ss_dssp             HHHHHHHTTTTSCSCCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHcccC
Confidence            3678999999999999999999999999999876554

>d1j8yf1 a.24.13.1 (F:3-86) Signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Domain of the SRP/SRP receptor G-proteins
family: Domain of the SRP/SRP receptor G-proteins
domain: Signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=83.55  E-value=0.39  Score=35.55  Aligned_cols=36  Identities=14%  Similarity=0.216  Sum_probs=33.0

Q ss_pred             hHHhhhhhccCcccchhchHHHHHHHHHHhhhcccc
Q 018522          317 FSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVV  352 (354)
Q Consensus       317 fssmFk~lvG~K~LT~eDLePvL~kMkdhLi~KNVA  352 (354)
                      +++-|+++.|+..||+++++.+|..++.-|+.-.|+
T Consensus         5 l~~a~~kl~~~~~i~E~~i~~~l~eIr~ALLeADVn   40 (84)
T d1j8yf1           5 LRDTVRKFLTGSSSYDKAVEDFIKELQKSLISADVN   40 (84)
T ss_dssp             HHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhcccC
Confidence            456789999999999999999999999999998886